BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] (343 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] gi|254040206|gb|ACT57002.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD Sbjct: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ Sbjct: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK Sbjct: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS Sbjct: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM Sbjct: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG Sbjct: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 >gi|315122280|ref|YP_004062769.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495682|gb|ADR52281.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 117/158 (74%), Positives = 137/158 (86%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 MKRKKR+QDL +KIS+TLSGLVA++IVKG+LF+TT G+LISIID NTPMFDKSSSIPL Sbjct: 1 MKRKKRMQDLEQKISTTLSGLVANHIVKGILFKTTPNGMLISIIDHNNTPMFDKSSSIPL 60 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 PE I++LQKIGE L+ S E ISI GHTDASPFR+ DNW+LSLDRAYS YQ+LMKSG+S Sbjct: 61 PEMILILQKIGEALSQSNENISIEGHTDASPFRHSTGDNWKLSLDRAYSTYQILMKSGIS 120 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E RISKISG A H KI+SDPMN+ANRRI+ILV+D +G Sbjct: 121 EKRISKISGLAQHNPKISSDPMNAANRRIEILVQDGEG 158 >gi|150395498|ref|YP_001325965.1| flagellar motor protein MotB [Sinorhizobium medicae WSM419] gi|150027013|gb|ABR59130.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 397 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 196/401 (48%), Gaps = 71/401 (17%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 H KN+ III ++ A ++ G WKI YADFMT +MAFFLVMW+INA +++TK Sbjct: 7 HNGKNE-----IIIVRRSAGSHEGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEETKA 61 Query: 64 AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG--- 116 AI YFNP + A KG+ D P + +Q + +D TK+ K G Sbjct: 62 AIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEKTQQRSKVDGDQTKSGGSAKSGDQL 117 Query: 117 --STNQKKQYQRL-------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 ++ ++ +Y E NI + +E ++ E + Sbjct: 118 TATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAESGPSTGAAGGEAYR 177 Query: 156 D------LCKSTDLEKSIN------------KEENYFLPPLSKEKIL------------- 184 D K +++ + N E F+P + K L Sbjct: 178 DPFDPDFWTKQVEVKDAGNTVESDVAIAANAAAEEKFVPEETSAKALQNQANAEDRTENE 237 Query: 185 --AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 A R++ + L +I L G A +++G++ G+L++I +Q + PMF S+ Sbjct: 238 AAAEDRQQEAEALKAEIERELGG-EAGRLLEGLVVAPAEGGLLVTISEQTDAPMFAVGSA 296 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +P E ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ Sbjct: 297 VPQKELVLAMEKIGRLLAQRPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRG 356 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ E+R+ +ISGFA RL++ +DP ANRRI+IL++ QG Sbjct: 357 GLKEERVKQISGFADRRLQVPNDPYAPANRRIEILLQSGQG 397 >gi|163758026|ref|ZP_02165114.1| flagellar motor protein [Hoeflea phototrophica DFL-43] gi|162284315|gb|EDQ34598.1| flagellar motor protein [Hoeflea phototrophica DFL-43] Length = 411 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 131/409 (32%), Positives = 202/409 (49%), Gaps = 84/409 (20%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +Q ++ II+K++ D ++ G WKI YADFMT +MAFFLVMW++NA++++TK AI Sbjct: 6 HQGKNEIIIVKRRGGGGDDGHHGGVWKIAYADFMTAMMAFFLVMWLVNASNEETKAAIAS 65 Query: 68 YFN--------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL---KIG 116 YFN P K + K E P+ ++ DE T + + K Sbjct: 66 YFNPIKLMDDKPADKGIKQVGKSAEGEATAPKSKTEG------DESTTGQAGEAGSQKNS 119 Query: 117 STNQKKQYQR---LENNIFYLSNSQQSEHCKNSLTRDSEKG------------------- 154 + +K+ Y EN L+ Q + +++ + G Sbjct: 120 TAGEKQDYSEADYFENPYSVLAEIAQETGTQTNVSDKGDGGAAQSGPATGASGGEAYRDP 179 Query: 155 -------KDLCKSTD-LEKS-----INKEENYFLP--PLSKEKIL--------------- 184 K + K +D LE+S + N LP P+ KE + Sbjct: 180 FDPDFWSKSVEKDSDTLEESQSMFEVETFANNRLPESPVDKEPLQDPTDADGPAGDLSAQ 239 Query: 185 --------AMKRKKRLQDLAKK------ISSTLSGLVADNIVKGVLFETTRTGILISIID 230 A+ ++ L+ LA+ I L G + + +G++ E G+L+SI D Sbjct: 240 MAGDGGTGALTPEQLLEQLAEADVLKEDIMKALGGALG-KLAEGLVVEPAEGGLLVSITD 298 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 Q + MF+ S++P + ++ ++KIGEVLA I+IRGHTDA PF + DNWRLSL Sbjct: 299 QLDFGMFNVGSAVPGRDLVIAMEKIGEVLAERDGAIAIRGHTDARPFASDTDDNWRLSLA 358 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RA+SAY +L++ G+SE+RIS++SGFA RLK +P++ NRRI+ILVE Sbjct: 359 RAHSAYYMLVRGGLSEERISQVSGFADRRLKDPDNPLSEVNRRIEILVE 407 >gi|304392497|ref|ZP_07374437.1| chemotaxis protein MotB [Ahrensia sp. R2A130] gi|303295127|gb|EFL89487.1| chemotaxis protein MotB [Ahrensia sp. R2A130] Length = 364 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/358 (31%), Positives = 172/358 (48%), Gaps = 28/358 (7%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q III ++ I + ++ G+WKI +ADFMT +MA FLV+W+INA +++TKK++ YF Sbjct: 5 DNEQPIIIVRRNRIAEDGHHGGAWKIAFADFMTAMMALFLVLWLINAANEETKKSVASYF 64 Query: 70 NPFG-KNLMTASKGIFDEQNPP----ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 NP + + KGI+ P E + D+ T G+ K++ Sbjct: 65 NPVKLVDRNRSKKGIWKSAGPSIETGEETEAGTDTQPEDKDSTSGPASSGAGADGSKREA 124 Query: 125 QRLENNIFYLSNSQQSEH-------CKNSLTRDSEKG------------KDLCKSTDLEK 165 + + + L +E + D E + TD Sbjct: 125 EFIADPFSELEEIASAERENMAAKTAAVGMAGDEESDAIRDPFSPVYWKPEPETPTDEIT 184 Query: 166 SINKEENYFLPPLSKEKIL--AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT- 222 I EE P ++ E R++ A + L VA + G + T T Sbjct: 185 PIRAEEEKPQPEITSEVSADDEAAREETDDAGASDVLKELKAAVAKAVDDGPRLDVTPTP 244 Query: 223 -GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G+LISI D + MF+ SS+P ++ + + +VL+ + I GHTDA PFR Sbjct: 245 DGLLISITDDFDFAMFETGSSVPSGRLVLAMDAVAQVLSERPGKLHIHGHTDARPFRGGE 304 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RDNW LS RA+SA +L++ G E RI +ISGFA RLK+ +P ++NRRI++L+E Sbjct: 305 RDNWTLSSARAHSARYMLLRGGFGEKRIVEISGFADRRLKLVDEPDAASNRRIELLLE 362 >gi|121602153|ref|YP_989388.1| putative flagellar motor protein MotB [Bartonella bacilliformis KC583] gi|120614330|gb|ABM44931.1| putative flagellar motor protein MotB [Bartonella bacilliformis KC583] Length = 357 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/360 (30%), Positives = 180/360 (50%), Gaps = 43/360 (11%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MA FLVMW++NA D++ K I YFNP Sbjct: 11 EIIIVRRGGHDDHDDHHGGVWKIAYADFMTAMMALFLVMWLVNAKDEEEKAVIANYFNPI 70 Query: 73 G-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KKQYQRLEN 129 + T +G+ +QN E ++ +D + E + L + + + Y LE Sbjct: 71 KLVDHETTIRGV--KQNDAEDNNTPSVDPTRREEAQSENGQLNLTEEAELMRDPYTGLEK 128 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE-----NYFLP-------- 176 + K ++ S+K + S + E ++E +Y+ P Sbjct: 129 IV----------DAKRTMQDQSDKNAENSTSMEQENGDSRENSKVGIDYYDPFSLNYWKQ 178 Query: 177 -----------PLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 PL+ +K+ + D AK+++ + V D+ V V E + G+ Sbjct: 179 AASDALVKAETPLAFQKLAQENFPSQESIDFAKELTEFMKETVNDHHV-SVYVEPIKEGV 237 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD 283 +I ++DQ MF SS+P ET+ V+ ++ +++A H +VI I GHTD+ P+R+ RD Sbjct: 238 IIELMDQPQREMFRVGSSLPTAETVEVIGEMAKIIAKHQGDVI-ISGHTDSRPYRSANRD 296 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 NW+LS RA AY +L++ G+ E RI ++ G+A LK +DP + NRRI I + + G Sbjct: 297 NWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKADPYAAENRRISIFIRNPNG 356 >gi|306841271|ref|ZP_07473982.1| flagellar motor protein MotB [Brucella sp. BO2] gi|306845424|ref|ZP_07477998.1| flagellar motor protein MotB [Brucella sp. BO1] gi|306274167|gb|EFM55983.1| flagellar motor protein MotB [Brucella sp. BO1] gi|306288673|gb|EFM60004.1| flagellar motor protein MotB [Brucella sp. BO2] Length = 366 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 173/365 (47%), Gaps = 45/365 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 LM ++ KG+ +N +R K+ D+ + +NS + + T + + E Sbjct: 70 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQV-ENSTKV-VNDTTVRPASDQEER 120 Query: 130 NIFYLSNSQQSE--HCKNSLTRDSEKGKDLCKSTDLEKSINKEENY-------------- 173 +F + +E H L S KG + + E Y Sbjct: 121 QLFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAV 180 Query: 174 --FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET----- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 181 GDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVT 240 Query: 220 ---TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA P Sbjct: 241 VVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARP 300 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 F++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 301 FKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDI 360 Query: 337 LVEDR 341 ++ + Sbjct: 361 FIKSK 365 >gi|319898651|ref|YP_004158744.1| flagellar motor protein MotB [Bartonella clarridgeiae 73] gi|319402615|emb|CBI76160.1| putative flagellar motor protein MotB [Bartonella clarridgeiae 73] Length = 384 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 107/360 (29%), Positives = 182/360 (50%), Gaps = 37/360 (10%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 D Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD TK+AI Sbjct: 4 DDQQSSSEIIIVRRGGHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDATKEAI 63 Query: 66 EQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 YFNP + T+++GI + N E+ ++ +D + D + +N ++ Sbjct: 64 ANYFNPIKLVDPQTSNRGI--QHNDIEQDKKSSLDQECKD-------DAQSEKSNAMEEA 114 Query: 125 QRLENNIFYLSNSQQSE-HCKNSLTRDSEKGKDLCKST-DLEKSINKEENYFLP--PLSK 180 + + + L QSE + +N + E+G + + D +K++ Y P P Sbjct: 115 ELMRDPYLGLKKIVQSERNAQNPAEQQFEQGNLVGQGAGDSQKNLQLGTEYHDPFSPYYW 174 Query: 181 EKILAMKRKKRLQD--------------------LAKKISSTLSGLVADNIVKGVLFETT 220 + +A +K+++Q L K+++ + G +NI+ V + Sbjct: 175 SENVASSQKRKIQKQKMMAKESEQENNSSENSHALLKELTDLIEGET-NNILAHV--KPI 231 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + G++I ++DQ MF SIP +TI ++ + ++A + I GHTDA P+R+ Sbjct: 232 KEGVMIELMDQPKYEMFKVGLSIPTAQTIDLISSMAGIIAKHQGDVVISGHTDARPYRSN 291 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 DNW+LS RA AY +L++ G+ E RI ++ G+A LK DP + NRRI I + D Sbjct: 292 VYDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRD 351 >gi|306840141|ref|ZP_07472926.1| flagellar motor protein MotB [Brucella sp. NF 2653] gi|306404786|gb|EFM61080.1| flagellar motor protein MotB [Brucella sp. NF 2653] Length = 366 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 173/365 (47%), Gaps = 45/365 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 LM ++ KG+ +N +R K+ D+ + +NS + + T + + E Sbjct: 70 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQV-ENSTKV-VNDTTVRPASDQEER 120 Query: 130 NIFYLSNSQQSE--HCKNSLTRDSEKGKDLCKSTDLEKSINKEENY-------------- 173 +F + +E H L S KG + + E Y Sbjct: 121 QLFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAV 180 Query: 174 --FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET----- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 181 GDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVT 240 Query: 220 ---TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA P Sbjct: 241 VVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARP 300 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 F++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 301 FKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDI 360 Query: 337 LVEDR 341 ++ + Sbjct: 361 FIKSK 365 >gi|254720768|ref|ZP_05182579.1| flagellar motor protein MotB [Brucella sp. 83/13] gi|265985826|ref|ZP_06098561.1| flagellar motor protein MotB [Brucella sp. 83/13] gi|264664418|gb|EEZ34679.1| flagellar motor protein MotB [Brucella sp. 83/13] Length = 366 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 173/365 (47%), Gaps = 45/365 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 LM ++ KG+ +N +R K+ D+ + +NS + + T + + E Sbjct: 70 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQV-ENSTKV-VNDTTVRPASDQEER 120 Query: 130 NIFYLSNSQQSE--HCKNSLTRDSEKGKDLCKSTDLEKSINKEENY-------------- 173 +F + +E H L S KG + + E Y Sbjct: 121 QLFREPYAMLAELAHETGVLQNQSVKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAV 180 Query: 174 --FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET----- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 181 GDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVT 240 Query: 220 ---TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA P Sbjct: 241 VVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARP 300 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 F++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 301 FKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDI 360 Query: 337 LVEDR 341 ++ + Sbjct: 361 FIKSK 365 >gi|294852974|ref|ZP_06793646.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] gi|294818629|gb|EFG35629.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] Length = 366 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 51/368 (13%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TK--NSVDLKIGSTNQKKQY 124 LM ++ KG+ +N +R K+ D+ + TK N ++ S +K+Q Sbjct: 70 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEKRQL 122 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY----------- 173 R + + H L S KG + + E Y Sbjct: 123 FREPYAML-----AELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSS 177 Query: 174 -----FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET-- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 178 KAVGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMP 237 Query: 220 ------TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 G++I + D+ + MF S+ P + +L++I +V+A + I GHTD Sbjct: 238 DVTVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTD 297 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 A PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRR Sbjct: 298 ARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRR 357 Query: 334 IDILVEDR 341 IDI ++ + Sbjct: 358 IDIFIKSK 365 >gi|161621187|ref|YP_001595073.1| flagellar motor protein MotB [Brucella canis ATCC 23365] gi|254702390|ref|ZP_05164218.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686] gi|260568709|ref|ZP_05839178.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261752951|ref|ZP_05996660.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686] gi|161337998|gb|ABX64302.1| Protein mbhA [Brucella canis ATCC 23365] gi|260155374|gb|EEW90455.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261742704|gb|EEY30630.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686] Length = 366 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 171/366 (46%), Gaps = 47/366 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ +N +R K+ D+ + TK D + + +++ Q Sbjct: 70 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 240 TVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRID Sbjct: 300 PFKSATYDNWRLSSTRAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359 Query: 336 ILVEDR 341 I ++ + Sbjct: 360 IFIKSK 365 >gi|23500858|ref|NP_700298.1| flagellar motor protein MotB [Brucella suis 1330] gi|163845462|ref|YP_001623117.1| flagellar motor protein MotB [Brucella suis ATCC 23445] gi|225628433|ref|ZP_03786467.1| Protein mbhA [Brucella ceti str. Cudo] gi|254711223|ref|ZP_05173034.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94] gi|254711824|ref|ZP_05173635.1| flagellar motor protein MotB [Brucella ceti M644/93/1] gi|254714893|ref|ZP_05176704.1| flagellar motor protein MotB [Brucella ceti M13/05/1] gi|256015903|ref|YP_003105912.1| flagellar motor protein [Brucella microti CCM 4915] gi|256030148|ref|ZP_05443762.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1] gi|256059799|ref|ZP_05449994.1| flagellar motor protein MotB [Brucella neotomae 5K33] gi|256158327|ref|ZP_05456231.1| flagellar motor protein MotB [Brucella ceti M490/95/1] gi|256252739|ref|ZP_05458275.1| flagellar motor protein MotB [Brucella ceti B1/94] gi|260166800|ref|ZP_05753611.1| flagellar motor protein MotB [Brucella sp. F5/99] gi|261216582|ref|ZP_05930863.1| flagellar motor protein MotB [Brucella ceti M13/05/1] gi|261219818|ref|ZP_05934099.1| flagellar motor protein MotB [Brucella ceti B1/94] gi|261318815|ref|ZP_05958012.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94] gi|261319452|ref|ZP_05958649.1| flagellar motor protein MotB [Brucella ceti M644/93/1] gi|261323779|ref|ZP_05962976.1| flagellar motor protein MotB [Brucella neotomae 5K33] gi|261756178|ref|ZP_05999887.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|265987178|ref|ZP_06099735.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1] gi|265996841|ref|ZP_06109398.1| flagellar motor protein MotB [Brucella ceti M490/95/1] gi|23464523|gb|AAN34303.1| chemotaxis motB protein [Brucella suis 1330] gi|163676185|gb|ABY40295.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|225616279|gb|EEH13327.1| Protein mbhA [Brucella ceti str. Cudo] gi|255998563|gb|ACU50250.1| flagellar motor protein [Brucella microti CCM 4915] gi|260918402|gb|EEX85055.1| flagellar motor protein MotB [Brucella ceti B1/94] gi|260921671|gb|EEX88239.1| flagellar motor protein MotB [Brucella ceti M13/05/1] gi|261292142|gb|EEX95638.1| flagellar motor protein MotB [Brucella ceti M644/93/1] gi|261298038|gb|EEY01535.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94] gi|261299759|gb|EEY03256.1| flagellar motor protein MotB [Brucella neotomae 5K33] gi|261736162|gb|EEY24158.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|262551138|gb|EEZ07299.1| flagellar motor protein MotB [Brucella ceti M490/95/1] gi|264659375|gb|EEZ29636.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1] Length = 366 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 171/366 (46%), Gaps = 47/366 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ +N +R K+ D+ + TK D + + +++ Q Sbjct: 70 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 240 TVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRID Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359 Query: 336 ILVEDR 341 I ++ + Sbjct: 360 IFIKSK 365 >gi|319405416|emb|CBI79035.1| putative flagellar motor protein MotB [Bartonella sp. AR 15-3] Length = 384 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 178/360 (49%), Gaps = 37/360 (10%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 D Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD+ K+AI Sbjct: 4 DDQQSSSEIIIVRRGRHDDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKEAI 63 Query: 66 EQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 YFNP + T+++GI +QN E+ ++ +D EH D + N ++ Sbjct: 64 ANYFNPIKLVDPQTSNRGI--QQNDIEQDKKSSLD---QEH----RDDAQSEKLNTTEEA 114 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK--STDLEKSIN---KEENYFLPPLS 179 + + N L QSE+ + K DL + D ++++ + + F P Sbjct: 115 ELMLNPYPGLEKIVQSEYSAQNSAEQQFKQGDLVGQGAGDTQENLQLGTEHHDPFSPYYW 174 Query: 180 KEKI-LAMKRKKRLQD------------------LAKKISSTLSGLVADNIVKGVLFETT 220 KE I + KRK + Q LAK ++ + +D +V + Sbjct: 175 KENIDSSQKRKNQKQKTLVKETTQENNFSENSRALAKDLTDLIEETNSDILVH---VKPI 231 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + G++I ++DQ MF S+P TI ++ + ++A I I GHTDA P+R+ Sbjct: 232 KEGVMIELMDQPKYEMFKVGLSVPTARTIDLIASMAGIIAKHQGDIVISGHTDARPYRST 291 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 DNW+LS RA AY +L++ G+ E RI ++ G+A LK DP + NRRI I + D Sbjct: 292 VYDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRD 351 >gi|153011513|ref|YP_001372727.1| flagellar motor protein MotB [Ochrobactrum anthropi ATCC 49188] gi|151563401|gb|ABS16898.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 371 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 105/367 (28%), Positives = 169/367 (46%), Gaps = 50/367 (13%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQN--------------------------PPERSSQNKI----- 98 LM ++SKG+ D + PP + ++ Sbjct: 70 --KLMDRHSSSKGVQDVEEKDGKVRYESDQKIENSTKVINDTTVAPPSDQEERQLFREPY 127 Query: 99 ----DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY---LSNSQQSEHCKNSLTRDS 151 +L+ + + +N G T+Q E Y S S + LT Sbjct: 128 AVLSELAHETGVLQNQSAKGDGGTSQSGPATGAEGGEAYRDPFSPDYWSSKAVDDLTPPD 187 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E + K E P ++E+++A +K + AK+ + Sbjct: 188 AA---PAAPPKPETAQPKPEETAKPAETQEQLIADLKKAAEGEAAKEGAEAKKA----EP 240 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + V G++I + D+ + MF S+ P + +L++I +V++ + I GH Sbjct: 241 MPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQPGEVIISGH 300 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 TDA PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K ASDP + N Sbjct: 301 TDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNASDPNAAEN 360 Query: 332 RRIDILV 338 RRIDI + Sbjct: 361 RRIDIFL 367 >gi|17988498|ref|NP_541131.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. 16M] gi|256042871|ref|ZP_05445817.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1] gi|260564108|ref|ZP_05834593.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265989306|ref|ZP_06101863.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1] gi|17984289|gb|AAL53395.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M] gi|260151751|gb|EEW86844.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262999975|gb|EEZ12665.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1] Length = 366 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 43/364 (11%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GK-NLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRLE 128 + ++ KG+ QN +R K+ D+ + TK D + + +++ Q Sbjct: 70 KLIDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQLFR 124 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--------------- 173 L+ + H L S KG + + E Y Sbjct: 125 EPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181 Query: 174 -FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET------ 219 PP + + L + K+ + +L + +G A N K E Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTV 241 Query: 220 --TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA PF Sbjct: 242 VPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPF 301 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIF 361 Query: 338 VEDR 341 ++ + Sbjct: 362 IKSK 365 >gi|222084880|ref|YP_002543409.1| chemotaxis motility protein [Agrobacterium radiobacter K84] gi|221722328|gb|ACM25484.1| chemotaxis motility protein [Agrobacterium radiobacter K84] Length = 452 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 2/154 (1%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +++ ++L + I + +SG VA + +GV + G+L++I DQ N PMF+ S++P E Sbjct: 271 QQQSAKELQQAIQAEISG-VAGQLAEGVQVASAEGGLLVTISDQSNDPMFNIGSAVPRRE 329 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSE 306 ++ + KIG++LA+ VI IRGHTD P+ DNWRLSLDRA SAY +L +G+ E Sbjct: 330 MVLAMGKIGKILANRKGVILIRGHTDGRPYMVGGHNDNWRLSLDRAQSAYYMLTSTGLDE 389 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 RI ++SGFA RLK+ +DP N ANRRI+IL+ED Sbjct: 390 KRIEQVSGFADRRLKLPNDPFNDANRRIEILIED 423 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 49/68 (72%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 GD+NQ + II+K+ A + + G+WKI YADFMT +MAFFLVMW++NA +++TK + Sbjct: 4 GDQNQGKHEIIIVKRHGANEHEGGHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETKAS 63 Query: 65 IEQYFNPF 72 + YFNP Sbjct: 64 VASYFNPI 71 >gi|256112172|ref|ZP_05453093.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether] gi|265993598|ref|ZP_06106155.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether] gi|262764468|gb|EEZ10500.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether] Length = 366 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 170/366 (46%), Gaps = 47/366 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ QN +R K+ D+ + TK D + + +++ Q Sbjct: 70 --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSSSGADGGEAYRDPFSPDYWSSKA 179 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRID Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359 Query: 336 ILVEDR 341 I ++ + Sbjct: 360 IFIKSK 365 >gi|254695098|ref|ZP_05156926.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya] gi|261215449|ref|ZP_05929730.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya] gi|260917056|gb|EEX83917.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya] Length = 366 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/366 (28%), Positives = 169/366 (46%), Gaps = 47/366 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ QN +R K+ D+ + TK D + + +++ Q Sbjct: 70 --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A K +DP + NRRID Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRID 359 Query: 336 ILVEDR 341 I ++ + Sbjct: 360 IFIKSK 365 >gi|319406989|emb|CBI80626.1| putative flagellar motor protein MotB [Bartonella sp. 1-1C] Length = 384 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 178/357 (49%), Gaps = 37/357 (10%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD+ K+AI Y Sbjct: 7 QSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKEAIANY 66 Query: 69 FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 FNP + T+++GI + E+ ++ +D + D + +N ++ + + Sbjct: 67 FNPIKLVDPQTSNRGI--QHKDIEQDKKSSLD-------QERRDDDQSEKSNPMEEAELM 117 Query: 128 ENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKST-DLEKSINKEENY---FLPPLSKEK 182 N L QSEH KN + EKG L + D ++++ Y F P +E Sbjct: 118 HNPYLGLEKIVQSEHHAKNPSEQQFEKGDLLGQGVGDSQENLQLGIEYHDPFSPDYWREN 177 Query: 183 ILAMKRKK----------RLQD---------LAKKISSTLSGLVADNIVKGVLFETTRTG 223 I + +++K +Q+ LAK+++ + +D + + + G Sbjct: 178 IDSFQKRKDQKQKTLVKESIQENNSSENSRVLAKELTDLIEAKNSDILAH---VKPIKEG 234 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283 ++I ++DQ MF S+P T+ ++ + ++A + I GHTDA P+R+ D Sbjct: 235 VMIELMDQPKYEMFKVGLSVPTARTVDLISSMAGIIAKYQGDVVISGHTDARPYRSTVYD 294 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW+LS RA AY +L++ G E RI ++ G+A LK +P + NRRI I + D Sbjct: 295 NWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKNPYAAENRRISIFIRD 351 >gi|325291956|ref|YP_004277820.1| flagellar motor protein MotB [Agrobacterium sp. H13-3] gi|27763656|gb|AAO20254.1| MotB [Agrobacterium sp. H13-3] gi|325059809|gb|ADY63500.1| flagellar motor protein MotB [Agrobacterium sp. H13-3] Length = 428 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +K+ ++L ++I +SG ++ + +G++ G+L++I DQ TPMF+ S++P E Sbjct: 274 QKEEAKELREEIEKQISG-ISGKLAEGLVVTPAEGGLLLTISDQTETPMFNVGSAVPRGE 332 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ ++KIG++L + IRGHTD F+ A DNWRLS+DRA+SAY +L++ G+SE+ Sbjct: 333 MVLAMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEE 392 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 R+ ++SGFA RL++ +DP+ +ANRRI+IL+E +G Sbjct: 393 RVKQVSGFADRRLQVPADPLANANRRIEILLEADRG 428 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S G+ + III K+ + G+WKI YADFMT +MAFFLVMW++NA +++TK Sbjct: 2 SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61 Query: 63 KAIEQYFNPFG-KNLMTASKGI---FDEQNPPERSSQNKIDLSIDEHITKNSV 111 ++ YFNP + +SKG+ D++ E+ Q+ I E +T+ S Sbjct: 62 ASVASYFNPIKLSDEKPSSKGLEKPVDKEEGVEKKDQSNIKA---EKVTQGSA 111 >gi|319409174|emb|CBI82818.1| putative flagellar motor protein MotB [Bartonella schoenbuchensis R1] Length = 396 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 110/369 (29%), Positives = 174/369 (47%), Gaps = 49/369 (13%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q + + II+++ D ++ G+WKI YADF+T +MAFFLVMW++NA D++T++AI Y Sbjct: 7 QSHSEIIIVRRGGHDDHDEHHGGAWKIAYADFVTAMMAFFLVMWLVNAKDEETREAIANY 66 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 FNP + D Q RS Q K D+ D+ I S ++ Q LE Sbjct: 67 FNPI---------KLTDSQT-SSRSIQKKNDVE-DDKICPVGQTCGGDSKSENVQLVSLE 115 Query: 129 ---------NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK----SINKEENYFL 175 + + + SQQ+ SL K + L ++ + + + F Sbjct: 116 ETELMRDPYSGLDKIVQSQQNVQNMQSLPDSDGKHETLMGNSKGDSKENLPVTDYRDPFS 175 Query: 176 PPLSKEKI-----------LAMKRKKRLQDLAK-----KISSTLSGLVADNIVKGVLFET 219 P KE + + K + Q LA+ + S + +AD ++K + E Sbjct: 176 PHYWKENVASHNNTLNAQGIEWKEGQAQQQLAQEDAPSQESRDFAKELAD-LIKEITDEN 234 Query: 220 TRTGILISI--------IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + ++ I +DQ MF SS+P +T+ + +I +V+A + + GH Sbjct: 235 HLSASVLPIREGVMIELMDQPEYEMFKVGSSVPTAQTVEFIDRIAKVIAKHPGNVVVGGH 294 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 TDA P+R+ RDNW+LS RA Y +L++ G+ E RI ++ G+A LK DP S N Sbjct: 295 TDARPYRSTTRDNWQLSTSRAQMVYYMLVRGGLDEKRILRVEGYADRNLKNKQDPYASEN 354 Query: 332 RRIDILVED 340 RR I V D Sbjct: 355 RRTSIFVRD 363 >gi|225686890|ref|YP_002734862.1| flagellar motor protein MotB [Brucella melitensis ATCC 23457] gi|256261973|ref|ZP_05464505.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225642995|gb|ACO02908.1| Protein mbhA [Brucella melitensis ATCC 23457] gi|263091457|gb|EEZ15993.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326411308|gb|ADZ68372.1| flagellar motor protein MotB [Brucella melitensis M28] gi|326554597|gb|ADZ89236.1| flagellar motor protein MotB [Brucella melitensis M5-90] Length = 366 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 169/366 (46%), Gaps = 47/366 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVVSYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ QN +R K+ D+ + TK D + + +++ Q Sbjct: 70 --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + G A N K E Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAAIGEPAPNAGKAAKPEPMPDV 239 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRID Sbjct: 300 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 359 Query: 336 ILVEDR 341 I ++ + Sbjct: 360 IFIKSK 365 >gi|312115287|ref|YP_004012883.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220416|gb|ADP71784.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 358 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 99/359 (27%), Positives = 174/359 (48%), Gaps = 30/359 (8%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KN+ I+++KK+ D N+ G WKI YADFMT +M FFLVMW++N++ + I Sbjct: 6 KNERAHADIVVRKKLYRSDGDNHGGVWKIAYADFMTAMMTFFLVMWLVNSSSKERLSQIA 65 Query: 67 QYFNPF--------GKNLMTASKGIFDEQNPPERSSQNKID-----LSIDEHITKNSVDL 113 YFNP K++ + D+ R + +D + +E +T+N + Sbjct: 66 NYFNPVKLNEHAPPAKDVAATAPKAQDKSPAAGRPNSAVVDPKDRHVFSEEELTRNPFGV 125 Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD-LCKSTDLEKSINKEE- 171 Q ++ R+ S Q S L+RD + L ++ + S + Sbjct: 126 LTQLATQAEEALRIA------SKEQDSSAAAGQLSRDPFVAEPRLVRTAKVSTSSGSQTA 179 Query: 172 --NYFLPPLSKEK--ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI--- 224 + P S + + +RK+ LA++I + + N+ + + + G+ Sbjct: 180 PGEWSDAPKSHKSANVAETERKEPAASLAEQILKDIESFQS-NLPQSFRVQVSVAGVAEG 238 Query: 225 -LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283 LIS++D MFD S++P P+T++V+ +IG++++ I IRG+TD PF Sbjct: 239 TLISLMDDTKRSMFDVGSAMPKPDTVLVMTRIGDIISKYPGKIIIRGYTDGRPFAGDRYG 298 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS RA A+ +L + + + R+ I G+A + + A DP+ NRRI++L++D + Sbjct: 299 NWVLSSQRARMAFLMLARGKIGDGRVLSIEGYADRQPRNADDPLAPENRRIEVLLKDSE 357 >gi|319403973|emb|CBI77561.1| putative flagellar motor protein MotB [Bartonella rochalimae ATCC BAA-1498] Length = 384 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 108/357 (30%), Positives = 180/357 (50%), Gaps = 37/357 (10%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD+TK+AI Y Sbjct: 7 QSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDETKEAIANY 66 Query: 69 FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 FNP + T+++GI + E+ ++ +D + D + +N ++ + + Sbjct: 67 FNPIKLVDPQTSNRGI--QHKDIEQDKKSSLD-------QERRDDDQSEKSNAMEEAELM 117 Query: 128 ENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKST-DLEKSIN---KEENYFLPPLSKEK 182 N L QSEH KN + EKG + + D ++++ + + F P +E Sbjct: 118 HNPYPGLEKIVQSEHHAKNPSEQQFEKGDLVGQGVGDSQENLQLGTEHHDPFSPHYWREN 177 Query: 183 I-LAMKRKKRLQD------------------LAKKISSTLSGLVADNIVKGVLFETTRTG 223 I + KRK + Q LA++++ + G + NI+ V + + G Sbjct: 178 IDFSQKRKDQKQKTLVKESIQENNSSENSRALAQELTDFIEGENS-NILAHV--KPIKEG 234 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283 ++I ++DQ MF S+P TI ++ + ++A + I GHTDA +R+ D Sbjct: 235 VMIELMDQPKYEMFKVGLSVPTARTIDLISSMAGIIAKYQGDVVISGHTDARAYRSAVYD 294 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW+LS RA AY +L++ G E RI ++ G+A LK DP + NRRI I + D Sbjct: 295 NWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRD 351 >gi|315122279|ref|YP_004062768.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495681|gb|ADR52280.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 126 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 71/122 (58%), Positives = 87/122 (71%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN D +Q+ +QFI IKKKV +D LGSWKIVYADFMT LM+FFLVMWI+NATDD+ Sbjct: 1 MNYQKDNDQKKNQFIFIKKKVVVDLEKKKLGSWKIVYADFMTALMSFFLVMWIVNATDDN 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TKK IE YFNPFG NL+ ASKGIF++ N P +N I+ ID+ T N+ +LK + Sbjct: 61 TKKVIENYFNPFGPNLLMASKGIFEKNNSPNNFPKNSINQPIDKKTTNNNFNLKDSIARK 120 Query: 121 KK 122 KK Sbjct: 121 KK 122 >gi|239834431|ref|ZP_04682759.1| Protein mbhA [Ochrobactrum intermedium LMG 3301] gi|239822494|gb|EEQ94063.1| Protein mbhA [Ochrobactrum intermedium LMG 3301] Length = 379 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/376 (28%), Positives = 169/376 (44%), Gaps = 60/376 (15%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ D + K+ D+ I TK D + +++++ Q Sbjct: 70 --KLMDRHSSPKGVQDVEE-----KDGKVRYESDQKIENSTKVINDTTVAPPSEQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY---FLPPLSKEKI 183 LS + H L S KG + + E Y F P K Sbjct: 123 FREPYAVLS---ELAHETGVLQNQSAKGDGGTSKSGPATGADGGEAYRDPFSPDYWSSKA 179 Query: 184 L-------------------------------------AMKRKKRLQDLAKKISSTLS-- 204 + A K+++ + DL K + Sbjct: 180 VEDLTPPDAAPATPPRPEAAQPKPEEAAKPAEAPADTPAEKQEQLIADLKKAAEGETAKE 239 Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 G A + V G++I + D+ + MF S+ P + +L++I +V++ Sbjct: 240 GTAAKKAEPMPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQ 299 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I GHTDA PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K Sbjct: 300 PGEVIISGHTDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKN 359 Query: 323 ASDPMNSANRRIDILV 338 A+DP + NRRIDI + Sbjct: 360 ANDPNAAENRRIDIFL 375 >gi|116250495|ref|YP_766333.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. viciae 3841] gi|115255143|emb|CAK06217.1| putative motility protein [Rhizobium leguminosarum bv. viciae 3841] Length = 443 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 93/139 (66%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G VA + +G+ + G+L+SI DQ + MF+ S++P E ++ ++KIG +L Sbjct: 305 GGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGAILKERGG 364 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ S Sbjct: 365 AVAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 424 Query: 325 DPMNSANRRIDILVEDRQG 343 DP N+ NRRI+ILV+ QG Sbjct: 425 DPFNATNRRIEILVQADQG 443 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H KN+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGKNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K ++ YFNP Sbjct: 62 KASVATYFNPI 72 >gi|62317962|ref|YP_223815.1| flagellar motor protein MotB [Brucella abortus bv. 1 str. 9-941] gi|83269939|ref|YP_419230.1| flagellar motor protein MotB [Brucella melitensis biovar Abortus 2308] gi|189023213|ref|YP_001932954.1| flagellar motor protein MotB [Brucella abortus S19] gi|237817509|ref|ZP_04596499.1| Protein mbhA [Brucella abortus str. 2308 A] gi|254691605|ref|ZP_05154859.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870] gi|254698194|ref|ZP_05160022.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59] gi|254731639|ref|ZP_05190217.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292] gi|256256793|ref|ZP_05462329.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68] gi|260544147|ref|ZP_05819968.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260757237|ref|ZP_05869585.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870] gi|260759398|ref|ZP_05871746.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292] gi|260762641|ref|ZP_05874973.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59] gi|260883041|ref|ZP_05894655.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68] gi|297250146|ref|ZP_06933847.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] gi|62198155|gb|AAX76454.1| MotB, chemotaxis protein [Brucella abortus bv. 1 str. 9-941] gi|82940213|emb|CAJ13269.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308] gi|189021787|gb|ACD74508.1| OmpA/MotB domain protein [Brucella abortus S19] gi|237787264|gb|EEP61482.1| Protein mbhA [Brucella abortus str. 2308 A] gi|260097418|gb|EEW81292.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260669716|gb|EEX56656.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292] gi|260673062|gb|EEX59883.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59] gi|260677345|gb|EEX64166.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870] gi|260872569|gb|EEX79638.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68] gi|297174015|gb|EFH33379.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] Length = 366 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 168/366 (45%), Gaps = 47/366 (12%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASYFNPV 69 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ QN +R K+ D+ + TK D + + +++ Q Sbjct: 70 --KLMDRHSSPKGV---QNVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 122 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 123 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 179 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 180 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 239 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 240 TVVPVEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 299 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DN RLS RA AY +L++ G+ E R+ ++ G+A K +DP + NRRID Sbjct: 300 PFKSATYDNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRID 359 Query: 336 ILVEDR 341 I ++ + Sbjct: 360 IFIKSK 365 >gi|209547941|ref|YP_002279858.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533697|gb|ACI53632.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 447 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 61/139 (43%), Positives = 93/139 (66%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G +A + +G+ + G+L+SI DQ + MFD S++P E ++ ++KIG +L Sbjct: 309 GGIAGKLAEGLTVTASEGGLLVSISDQSDDSMFDIGSAVPRQEMVLAMEKIGAILKERGG 368 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ S Sbjct: 369 AVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 428 Query: 325 DPMNSANRRIDILVEDRQG 343 DP N+ NRRI+ILV+ +G Sbjct: 429 DPFNATNRRIEILVQADRG 447 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H KN+ II+K+ D ++ G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGKNE----IIIVKRHGGGDHDGSHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K ++ YFNP Sbjct: 62 KASVATYFNPI 72 >gi|15887914|ref|NP_353595.1| flagellar motor protein MotB [Agrobacterium tumefaciens str. C58] gi|15155508|gb|AAK86380.1| flagellar motor protein, PAL/OmpA family [Agrobacterium tumefaciens str. C58] Length = 433 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 63/149 (42%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L ++I +SG+ + +G++ G+L++I DQ TPMF+ S++P E ++ ++K Sbjct: 286 LREEIEKQISGITG-KLSEGLVVTPAEGGLLLTISDQAETPMFNIGSAVPRGELVLAMEK 344 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 IG++L + IRGHTD F+ A DNWRLS+DRA+SAY +L++ G+SE+R+ ++SG Sbjct: 345 IGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEERVKQVSG 404 Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQG 343 FA RL++ S+P+ ANRRI+IL+E +G Sbjct: 405 FADRRLQVPSNPLADANRRIEILLEADRG 433 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 45/70 (64%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S G+ + III K+ + G+WKI YADFMT +MAFFLVMW++NA +++TK Sbjct: 2 SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61 Query: 63 KAIEQYFNPF 72 ++ YFNP Sbjct: 62 ASVASYFNPI 71 >gi|241203119|ref|YP_002974215.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857009|gb|ACS54676.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 443 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 61/139 (43%), Positives = 93/139 (66%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G VA + +G+ + G+L+SI DQ + MF+ S++P E ++ ++KIG +L Sbjct: 305 GGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGAILKERGG 364 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 +++RGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ S Sbjct: 365 AVAVRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 424 Query: 325 DPMNSANRRIDILVEDRQG 343 DP N+ NRRI+ILV+ QG Sbjct: 425 DPFNATNRRIEILVQADQG 443 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H KN+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGKNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K ++ YFNP Sbjct: 62 KASVATYFNPI 72 >gi|218675467|ref|ZP_03525136.1| flagellar motor protein MotB [Rhizobium etli GR56] Length = 436 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 63/153 (41%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++KK L +I+ + G VA + +G+ G+L+SI DQ + MF+ S++P Sbjct: 283 QQKKEADALQAQIAQQIGG-VAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQ 341 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E ++ +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E Sbjct: 342 EMVLAMERIGTILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDE 401 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RIS++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 402 KRISQVSGFADRRLKLPADPFNAANRRIEILVQ 434 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H +N+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K A+ YFNP Sbjct: 62 KAAVATYFNPI 72 >gi|222147584|ref|YP_002548541.1| flagellar motor protein MotB [Agrobacterium vitis S4] gi|221734572|gb|ACM35535.1| flagellar motor protein [Agrobacterium vitis S4] Length = 444 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L ++I+S + G VA + +G++ + G+LI++ DQ PMFD S++P E ++ ++K Sbjct: 297 LKQQIASEIGG-VAGKLAEGLIVQPAEGGLLITLTDQSQAPMFDVGSAVPRKEMVLAMEK 355 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 IG++LA + IRGHTDA ++ DNW LS+ RA+SAY +L++ G++++RI+++SG Sbjct: 356 IGKLLAERQGAVVIRGHTDARQYKGPDNDNWGLSMSRAHSAYYMLVRGGLAQNRITQVSG 415 Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342 FA RL DP+ +ANRRI+ILV+ Q Sbjct: 416 FADRRLLKPEDPLAAANRRIEILVQGDQ 443 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H KN+ I+IK+ D + G+WKI YADFMT +MAFFLVMW++NA ++ T Sbjct: 6 NHHHGKNE----IIVIKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEKT 61 Query: 62 KKAIEQYFNPF 72 ++ YFNP Sbjct: 62 TASVASYFNPI 72 >gi|82940569|emb|CAJ44300.1| putative Chemotaxis Motility protein B (MotB) [Rhizobium leguminosarum bv. viciae] Length = 146 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 63/139 (45%), Positives = 93/139 (66%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G VA + +G+ + G+L+SI DQ + MF+ S++P E ++ ++KIG +L Sbjct: 8 GGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGAILKARGG 67 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 I+IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ S Sbjct: 68 AIAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPS 127 Query: 325 DPMNSANRRIDILVEDRQG 343 DP N+ NRRI+ILV+ QG Sbjct: 128 DPFNATNRRIEILVQADQG 146 >gi|86356325|ref|YP_468217.1| flagellar motor protein MotB [Rhizobium etli CFN 42] gi|86280427|gb|ABC89490.1| chemotaxis motility protein [Rhizobium etli CFN 42] Length = 436 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 59/135 (43%), Positives = 92/135 (68%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G VA + +G+ G+L+SI DQ + MF+ S++P E ++ ++KIG +L Sbjct: 300 GGVAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAMEKIGTILKERGG 359 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++IRGHTD ++ +NWRLS+DRA SAY +L++ G++E R+S++SGFA RLK+ + Sbjct: 360 AVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLNETRVSQVSGFADRRLKLPA 419 Query: 325 DPMNSANRRIDILVE 339 DP N+ANRRI+ILV+ Sbjct: 420 DPFNAANRRIEILVQ 434 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H +N+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K A+ YFNP Sbjct: 62 KAAVATYFNPI 72 >gi|227820870|ref|YP_002824840.1| flagellar motor protein MotB [Sinorhizobium fredii NGR234] gi|227339869|gb|ACP24087.1| chemotaxis protein motility protein B [Sinorhizobium fredii NGR234] Length = 392 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 95/139 (68%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G A +++G++ + G+L++I +Q + PMF S++P + ++ ++KIG +LA Sbjct: 254 GGEAGRLLEGLVVTPSEGGLLVTISEQTDAPMFAVGSAVPAKDLVLAMEKIGTLLAERQG 313 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++IRGHTD PF++ DNWRLS RA SAY +L++ G+ E R+++ISGFA RL++ + Sbjct: 314 AVAIRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLKEQRVNQISGFADRRLQVPN 373 Query: 325 DPMNSANRRIDILVEDRQG 343 DP +ANRRI+IL++ QG Sbjct: 374 DPYAAANRRIEILLQSGQG 392 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 H KN+ III K+ ++ G WKI YADFMT +MAFFLVMW+INA +++TK Sbjct: 7 HNGKNE-----IIIVKRSGDGHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEETKA 61 Query: 64 AIEQYFNP 71 AI YFNP Sbjct: 62 AIASYFNP 69 >gi|327193053|gb|EGE59965.1| chemotaxis motility protein [Rhizobium etli CNPAF512] Length = 440 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 62/153 (40%), Positives = 101/153 (66%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +R+K+ D ++ + G VA + +G+ + G+L+SI DQ + MF+ S++P Sbjct: 286 ERQKKEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQ 345 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E ++ +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E Sbjct: 346 EMVLAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDE 405 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RIS++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 406 KRISQVSGFADRRLKLPADPFNAANRRIEILVQ 438 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H +N+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K A+ YFNP Sbjct: 62 KAAVATYFNPI 72 >gi|218509333|ref|ZP_03507211.1| flagellar motor protein MotB [Rhizobium etli Brasil 5] Length = 228 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 57/133 (42%), Positives = 91/133 (68%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 VA + +G+ + G+L+SI DQ + MF+ S++P E ++ +++IG +L + Sbjct: 94 VAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAMERIGTILKERGGAV 153 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 ++RGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ +DP Sbjct: 154 AVRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPADP 213 Query: 327 MNSANRRIDILVE 339 N+ANRRI+ILV+ Sbjct: 214 FNAANRRIEILVQ 226 >gi|190890377|ref|YP_001976919.1| chemotaxis motility protein [Rhizobium etli CIAT 652] gi|190695656|gb|ACE89741.1| chemotaxis motility protein [Rhizobium etli CIAT 652] Length = 440 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 147/281 (52%), Gaps = 25/281 (8%) Query: 66 EQYFNPFGKN-------LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 E Y +PF + + TA K + PP +S++ + + E + +T Sbjct: 176 EAYRDPFDPDFWTKQVEVTTAGKAL-----PPGKSAEQATEGAATEVAKAEDMKPVPLAT 230 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 +QK ++++S+ K + +++ GK EK + E+N Sbjct: 231 DQKP-----------AKDAKESKETKGAP--ETKGGKTTDGKAPDEKKVEAEKNADHQKD 277 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + +R+K D ++ + G VA + +G+ + G+L+SI DQ + MF+ Sbjct: 278 ADKSADETERQKTEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFN 337 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S++P E ++ +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY + Sbjct: 338 IGSAVPRQEMVLAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYM 397 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 L++ G+ E RIS++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 398 LVRGGLDEKRISQVSGFADRRLKLPADPFNAANRRIEILVQ 438 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H +N+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNPF 72 K A+ YFNP Sbjct: 62 KAAVATYFNPI 72 >gi|148260894|ref|YP_001235021.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146402575|gb|ABQ31102.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 371 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 19/344 (5%) Query: 12 DQFI-IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 DQ + +I ++ I + ++ G+WK+ YADF+T +MAFFL+MW+INAT + + + YF+ Sbjct: 13 DQAVNLIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFS 72 Query: 71 PFGKNLMTASKG---IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 L A+ G F P ++ + + ++ + N V ++ T Q +Q + Sbjct: 73 -QANVLNRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYQVPHTPQGQQIRPD 131 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + N+ K + + + +L+K + P S EK A Sbjct: 132 HPTGNDMVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAP-SGEKAAAGT 190 Query: 188 RKKRLQDLA--------KKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNT 234 + S + ++A + + K V T G+ I I+D Sbjct: 191 GGAIGGLAPGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKR 250 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 PMF S+ P P T+ +L KI +L+ + I I G+TDA P+ +DNW LS++RA + Sbjct: 251 PMFALGSARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANA 310 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 VL+K+G + I+++SG+A +L I S+P+ +ANRR+ ILV Sbjct: 311 TRAVLVKAGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILV 354 >gi|326404291|ref|YP_004284373.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301] gi|325051153|dbj|BAJ81491.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301] Length = 371 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 19/344 (5%) Query: 12 DQFI-IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 DQ + +I ++ I + ++ G+WK+ YADF+T +MAFFL+MW+INAT + + + YF+ Sbjct: 13 DQAVNLIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFS 72 Query: 71 PFGKNLMTASKG---IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 L A+ G F P ++ + + ++ + N V ++ T Q +Q + Sbjct: 73 -QANVLNRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYEVPHTPQGQQIRPD 131 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + N+ K + + + +L+K + P S EK A Sbjct: 132 HPTGNDMVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAP-SGEKAAAGT 190 Query: 188 RKKRLQDLA--------KKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNT 234 + S + ++A + + K V T G+ I I+D Sbjct: 191 GGAIGGLAPGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKR 250 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 PMF S+ P P T+ +L KI +L+ + I I G+TDA P+ +DNW LS++RA + Sbjct: 251 PMFALGSARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANA 310 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 VL+K+G + I+++SG+A +L I S+P+ +ANRR+ ILV Sbjct: 311 TRAVLVKAGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILV 354 >gi|15964427|ref|NP_384780.1| flagellar motor protein MotB [Sinorhizobium meliloti 1021] gi|307311569|ref|ZP_07591210.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] gi|15073604|emb|CAC45246.1| Chemotaxis (motility protein B) transmembrane [Sinorhizobium meliloti 1021] gi|306899586|gb|EFN30215.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] Length = 394 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 111/196 (56%), Gaps = 10/196 (5%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 R++ G + + K+ + EN + A +K + L +I L G Sbjct: 209 AREAASGPGVPDKAEGAKAADAPEN---------QAPAENPQKEAEALKAEIEKELGG-G 258 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 A +++G+ G+L++I +Q + PMF S++P E ++ ++KIG +LA ++ Sbjct: 259 AGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQKELVLAMEKIGRLLAERPGAVA 318 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 +RGHTD PF++ DNWRLS RA SAY +L++ G+ E+R+ +ISGFA RL++ +D Sbjct: 319 VRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEEERVKQISGFADRRLQVPNDAY 378 Query: 328 NSANRRIDILVEDRQG 343 ANRRI+IL++ QG Sbjct: 379 APANRRIEILLQSGQG 394 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 10/120 (8%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN + N +N+ III ++ A ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG 116 TK AI YFNP + A KG+ D P + +Q + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEQTQQRSKVDGEQTKSGGSAKTG 114 >gi|307318924|ref|ZP_07598355.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306895338|gb|EFN26093.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] Length = 394 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +K + L +I L G A +++G+ G+L++I +Q + PMF S++P E Sbjct: 241 QKEAEALKAEIEKELGG-EAGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQKEL 299 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ G+ E+R Sbjct: 300 VLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEEER 359 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + +ISGFA RL++ +D ANRRI+IL++ QG Sbjct: 360 VKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 10/120 (8%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN + N +N+ III ++ A + ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MNDESNHNGKNE--IIIVRRSADNHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG 116 TK AI YFNP + A KG+ D P + +Q + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEQTQQRSKVDGEQTKSGGSAKTG 114 >gi|218658934|ref|ZP_03514864.1| flagellar motor protein MotB [Rhizobium etli IE4771] Length = 151 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/135 (42%), Positives = 91/135 (67%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G VA + +G+ G+L+SI DQ + MF+ S++P E ++ +++IG +L Sbjct: 15 GGVAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAMERIGTILKERGG 74 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ + Sbjct: 75 AVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPA 134 Query: 325 DPMNSANRRIDILVE 339 +P N+ANRRI+ILV+ Sbjct: 135 EPFNAANRRIEILVQ 149 >gi|2275156|gb|AAB81408.1| MotB [Sinorhizobium meliloti] Length = 394 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +K + L +I L G A +++G+ G+L++I +Q + PMF S++P E Sbjct: 241 QKEAEALKAEIEKELGG-EAGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQKEL 299 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ G+ E+R Sbjct: 300 VLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEEER 359 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + +ISGFA RL++ +D ANRRI+IL++ QG Sbjct: 360 VKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 10/120 (8%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN + N +N+ III ++ A ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLS---IDEHITKNSVDLKIG 116 TK AI YFNP + A KG+ D P + +Q + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKD----PAKDAQGEQTQQRSKVDGEQTKSGGSAKTG 114 >gi|319781670|ref|YP_004141146.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167558|gb|ADV11096.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 445 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 62/131 (47%), Positives = 91/131 (69%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 D + GV E T G++ISI DQ + MF+ S++P E ++ ++KIG ++ IS Sbjct: 311 GDKLHDGVSVEATDKGVVISITDQLDFGMFEVGSALPRRELVLAMEKIGRIVNSQKGTIS 370 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTDA PFR+ + DNWRLS RA+SAY +L++ GV E RI++++GFA + KIA+DP+ Sbjct: 371 INGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVDERRITEVAGFADRQPKIAADPL 430 Query: 328 NSANRRIDILV 338 +ANRRI+IL+ Sbjct: 431 AAANRRIEILM 441 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 17/147 (11%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +Q + II+++ D ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+ Sbjct: 7 DQGRHEIIIVRRSHDDHDEAHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAVAS 66 Query: 68 YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSID---EHITKNSVDLKIGSTNQKKQ 123 YFNP + ++ KG+ D + P + L+ D E +K + G+ +++ Sbjct: 67 YFNPVKLVDRNSSRKGLEDLGDGP-----RAMGLTADDPQEATSKAGQNGNAGAGASERK 121 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRD 150 + E QQ+EH + L D Sbjct: 122 QDKQE--------PQQAEHSDDHLFAD 140 >gi|217976235|ref|YP_002360382.1| OmpA/MotB domain protein [Methylocella silvestris BL2] gi|217501611|gb|ACK49020.1| OmpA/MotB domain protein [Methylocella silvestris BL2] Length = 402 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 7/153 (4%) Query: 193 QDLAKKISSTLSGLVADNIVKG-------VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 Q + + +S +GL A KG + E T G+LIS+ D R MF S+ PL Sbjct: 245 QPMDTETASLKAGLTALAPQKGRFGDGPRIEVENTDEGLLISLTDDRKFSMFAIGSAAPL 304 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P+TI + KIG++L + ++ +RGHTDA PF++ DNWRLS RA+ A +L + G+ Sbjct: 305 PQTIEAMAKIGDLLKTRSGMVVVRGHTDARPFKSATYDNWRLSTARAHMAQYMLTRGGLD 364 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E RI KI GFA HRLK+A++P +ANRRI+IL+ Sbjct: 365 EKRIEKIEGFADHRLKVAAEPTAAANRRIEILL 397 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 5/96 (5%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q I+I K+ + DD + G+WKI +ADFMT +MA FLV+W+I++T D TK ++ QY Sbjct: 3 EKEHQEIVIVKRYSRDDEARHGGAWKIAFADFMTAMMALFLVLWLISSTSDKTKHSVAQY 62 Query: 69 FNPFG-KNLMTASKGIFD----EQNPPERSSQNKID 99 FNP ++ T KG D E ++++++ID Sbjct: 63 FNPVKLVDMTTLKKGFRDPKKTEMGAGPKTTESEID 98 >gi|13472587|ref|NP_104154.1| flagellar motor protein MotB [Mesorhizobium loti MAFF303099] gi|14023333|dbj|BAB49940.1| flagellar motor protein; MotB [Mesorhizobium loti MAFF303099] Length = 471 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/131 (45%), Positives = 90/131 (68%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 D + GV E T G++ISI DQ + MF+ S++P E ++ ++KIG ++ IS Sbjct: 337 GDKLHDGVSVEATDKGVVISITDQLDFGMFEVGSAVPSRELVLAMEKIGRIVNSQKGTIS 396 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTDA PFR+ + DNWRLS RA+SAY +L++ GV E RI++++GFA + K +DP+ Sbjct: 397 INGHTDARPFRSASYDNWRLSTARAHSAYYMLVRGGVDERRITEVAGFADRQPKDPADPL 456 Query: 328 NSANRRIDILV 338 ++ANRRI+IL+ Sbjct: 457 SAANRRIEILM 467 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 43/66 (65%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 D + + II+++ D ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+ Sbjct: 15 DADHGRHEIIIVRRAHDDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAV 74 Query: 66 EQYFNP 71 YFNP Sbjct: 75 ASYFNP 80 >gi|89902463|ref|YP_524934.1| OmpA/MotB [Rhodoferax ferrireducens T118] gi|89347200|gb|ABD71403.1| OmpA/MotB [Rhodoferax ferrireducens T118] Length = 314 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 61/330 (18%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II KK+ + G+WKI YADF+T +MAFFL+MW++ +T + KK + YF+ K Sbjct: 11 IIVKKIKKGGHVVHGGAWKIAYADFVTAMMAFFLLMWLLGSTSEGDKKGLSDYFSAPLKV 70 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 M G N I + DL T + Q +R + S Sbjct: 71 SMQGGSGA---------GGSNTI-------LPGGGADL----TQKSGQNRRGDG-----S 105 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + Q N++ + +A + K+L + Sbjct: 106 DPMQKRMAANAVKAE---------------------------------VAKQDAKKLAGI 132 Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + KIS+ +SG + + ETT G+ I I+D + PMFD S++ P +L++ Sbjct: 133 SAKISALISGNTKLTEFSRQIRLETTADGLQIQIVDDQKRPMFDSGSAVVKPYMRDILRE 192 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG L IS+ GHTD+SP+ + R NW LS DRA ++ + L+ +G+ +D+++++ Sbjct: 193 IGGALNGVENKISLDGHTDSSPYSSAQRGYSNWELSSDRANASRRELVAAGMPDDKLARV 252 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A L +P + NRRI I V R+ Sbjct: 253 VGLASSILLDPENPTGAVNRRISITVMTRE 282 >gi|254293721|ref|YP_003059744.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] gi|254042252|gb|ACT59047.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] Length = 303 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 150/328 (45%), Gaps = 48/328 (14%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN T D K+ I YF P Sbjct: 7 IVIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPDQKRGIADYFAP--- 63 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + SK ++ D +G T+ + R + Sbjct: 64 --ASVSK-------------------------SRQGSDGMLGGTSFQDDGARSGGTNRPM 96 Query: 135 SNSQQSEHCKNSLTRDS-EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---K 190 S+Q+ + + T+++ + KS ++ +S + K +AM+ + + Sbjct: 97 PESKQTASKRRTSTKNAGTPSNETNKSKEVSQS------------AMSKAIAMREQAEFE 144 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R + ++ + L A + K ++ + T G+ I I+DQ MF +S+ PLP Sbjct: 145 RAEQSLRQAMQDMPDLAA--LSKHLVIDQTPEGMRIQIVDQEGRAMFAAASAKPLPRAEK 202 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L + +V+ +SI GHT P NW+LS DRA SA +L SG+ DRI Sbjct: 203 ILAAVSQVIMKLPNRVSISGHTGDLPTGVEGYSNWQLSSDRANSARSILESSGLDADRIY 262 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 ++SG A DP NRRI I++ Sbjct: 263 QVSGKAGSEPLYPDDPDLPGNRRISIVL 290 >gi|261855636|ref|YP_003262919.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261836105|gb|ACX95872.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 358 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 101/328 (30%), Positives = 152/328 (46%), Gaps = 63/328 (19%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 II KKV+ ++ G+WKI YADF+T +MAFFL+MW++ + + K I YFN P Sbjct: 11 IIIKKVSKGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSVGEVKLKGIADYFNNPVKV 70 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L E P S + ID E +T+ ++ GS K Sbjct: 71 TL---------EGGPSAGMSVSLIDAG-GEDLTRKEGQVRNGSEPPAK------------ 108 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 E + +T + + K I +E+ KKR+++ Sbjct: 109 -----IETDQKKMTEEEAR-----------KKIEEED-----------------KKRIEN 135 Query: 195 LAKKISSTLSGLVADNIVKG----VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L K++ S ++ D +K + + TR G+ I IIDQ N PMF SSS P Sbjct: 136 LKKELESLIN---VDPALKAYKDQIKLDMTRDGLRIQIIDQANRPMFKISSSRLEPYAAE 192 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L+K+ V+ +SI GHTD+ P+ + R NW LS DRA +A + L++ G E ++ Sbjct: 193 ILKKLAPVINKLPNRLSITGHTDSLPYNGVDRTNWELSADRANAARRELVQDGYDESKLL 252 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 ++ G A I SDP + NRRI I+V Sbjct: 253 RVVGMAAALPFIPSDPADPRNRRISIIV 280 >gi|327482425|gb|AEA85735.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166] Length = 337 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/332 (30%), Positives = 147/332 (44%), Gaps = 68/332 (20%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +N Q II+K KKVA ++ G+WKI +ADF T +MAFFLVMW++++ + KK I Sbjct: 2 DNTQPIIVKRVKKVA---GGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISG 58 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF Q+P + E + + +DL G T + L Sbjct: 59 YF-----------------QDP----------IGFTESASPHVIDL--GGTPTPSPDRTL 89 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 N + E DSE+ + L + L +E++ + Sbjct: 90 --------NQVEQEPASKDAQFDSEQAETLAEQ-----------------LERERLDLV- 123 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 LQ+L K+ +LFE T+ G+ I I+D N PMF S+ P Sbjct: 124 ----LQELQNKVDENPE---LQKFKDQILFEITQDGLRIQIMDAENRPMFALGSAQLQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSE 306 +L + E +A ISI GHTDA PF NW LS RA +A + L+ G E Sbjct: 177 FEDILLALVETIAAVPNKISISGHTDAKPFSGRGDFGNWELSASRANAARRTLVYGGYPE 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++I+++ G+A L DP N NRRIDILV Sbjct: 237 EQIARVVGYASSALFDRKDPFNPVNRRIDILV 268 >gi|332527142|ref|ZP_08403219.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111570|gb|EGJ11552.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 322 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 73/336 (21%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K+V + G+WKI YADF+T +MAFFL+MW++ +T + + Sbjct: 11 IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDR------------- 57 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 KGI D P + V L G + L+ Sbjct: 58 -----KGIADYFTSPLK------------------VALNSGGSGAGDASHVLKGG----- 89 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK----- 190 G+DL ++T K + E P + + A+K+++ Sbjct: 90 ------------------GQDLTRTTGQVKRGDIEA-----PRATVNLQALKQEQVRAEI 126 Query: 191 -RLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RLQDL ++I ++ + ++ L + TR G+ I I+D++N PMF S++ P Sbjct: 127 VRLQDLKRRIEEKIAANKRLSAMRSQLRLDMTRDGLRIQIVDEQNRPMFASGSAVVQPYM 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSE 306 +LQ+IG VLA +++ GHTDA + R NW LS DRA ++ +VL + G+ E Sbjct: 187 RELLQEIGSVLAEVPNRLTLEGHTDAMAYAGGERGYSNWELSSDRANASRRVLAEGGLPE 246 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 DR+ ++ G A + DP+ NRRI I+V +R+ Sbjct: 247 DRMLRVQGLASSQPFDRQDPLAPTNRRISIIVMNRE 282 >gi|260466608|ref|ZP_05812796.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] gi|259029614|gb|EEW30902.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] Length = 466 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 88/131 (67%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 D + GV E T G++ISI D+ + MF+ S++P E ++ ++KIG ++ IS Sbjct: 332 GDKLHDGVSVEATDKGVVISITDRLDFGMFEVGSALPSRELVLAMEKIGRIVNSQKGTIS 391 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTDA PFR+ + DNWRLS RA+SAY +L++ GV E RI++++GFA + K +DPM Sbjct: 392 INGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVDERRITEVAGFADRQPKDPADPM 451 Query: 328 NSANRRIDILV 338 + NRRI+IL+ Sbjct: 452 AAVNRRIEILM 462 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 + II++ D ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+ YFNP Sbjct: 12 EIIIVRHAHGDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAVASYFNP 70 >gi|83858208|ref|ZP_00951730.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633] gi|83853031|gb|EAP90883.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633] Length = 303 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 148/327 (45%), Gaps = 42/327 (12%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +DQ I+IKK ++ G+WK+ YADF+T +MAFFL+MW+IN T+ + ++ I YF Sbjct: 3 SDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLMMWLINNTEPEQRQGIADYFA 62 Query: 71 PFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + T S G+ + + ++ SI E + S E Sbjct: 63 PASVSRTTSGSGGVLGGTSFGDDGARGSGSSSIVERLAPRS-----------------EQ 105 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ S Q+++ + E D S +E F S E+ L + Sbjct: 106 DV---SREQEADQASGAAGGQPEASSDALASA----VARREAAQFA---SAEQSL----R 151 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + LQD+ + + + VL E T G+ I +IDQ PMF+ + P Sbjct: 152 QALQDMPELA----------ELSRHVLIEETPEGLRIQLIDQEGRPMFEPGAIEPNSRAR 201 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V+L+ I E++ I+I GHTDASP NW LS RA +A ++ ++G+ + RI Sbjct: 202 VLLRTISEIVLRLPNRITISGHTDASPAPVGGVSNWELSSARANAALNIMTEAGIPDHRI 261 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDI 336 +++ G A DP NRR+ I Sbjct: 262 AEVRGKAGAEPLFPDDPYLPGNRRLSI 288 >gi|315499937|ref|YP_004088740.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48] gi|315417949|gb|ADU14589.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48] Length = 300 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 46/308 (14%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA-SKGIFDEQNPP 90 +WK+ YADF+T +MAFFL+MW+IN T + KK + YF P + T+ S GI Sbjct: 25 AWKVAYADFVTAMMAFFLLMWLINTTSPEQKKGVADYFAPASVSQTTSGSGGILAGTAIG 84 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + + ++ EH+ + D++ K N LS + + E + Sbjct: 85 RDGVKQEGSMAFIEHMAPEAPDVQDRDGTAK--------NAADLSQTPEEELRE------ 130 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 +L+K +EE F + A ++ LQD+ + Sbjct: 131 -----------ELQK---REEASF-------RSAAESLRQALQDMPELA----------E 159 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K +L + T G+ I +IDQ MF+ +S+ P ++L+ + +V+ ISI G Sbjct: 160 LSKNILVDQTPEGLRIQLIDQEGRAMFNANSTQPNERARLLLRAVAKVVNQLPNRISITG 219 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HT +P + +W+LS DRA ++ QVL +GV +DR++++SG A DP + Sbjct: 220 HTTGTPGMGQSDKDWKLSADRADASRQVLQGAGVDQDRVAQVSGKAAKEPLYPDDPTLAG 279 Query: 331 NRRIDILV 338 NRRI I++ Sbjct: 280 NRRIAIIL 287 >gi|171057687|ref|YP_001790036.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170775132|gb|ACB33271.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 320 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 142/328 (43%), Gaps = 60/328 (18%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K+V + G+WKI YADF+T +MAFFL+MW++ +T + KK I+ +F K Sbjct: 11 IIIKRVKKGGHSAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDKKGIQDFFQSPLKV 70 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 M+ G D + + + +++ S +K G KK Y N + Sbjct: 71 AMSGGAGAGDATSVIKGGGTD---------LSQTSGQVKRGEVPSKKTY-----NAEAIK 116 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SQ+ K E L L + M +L + Sbjct: 117 TSQR-----------------------------KAEQERLETLRQRVQDVMANSPKLAEF 147 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +I + TR G+ I I+D++N PMFD +S P +L+ I Sbjct: 148 KNQIR----------------LDMTRDGLRIQIVDEQNRPMFDSGASEVKPYMREILRAI 191 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 G VL +++ GHTDA P + A NW LS DRA ++ + L+ G+ + R+ ++ G Sbjct: 192 GSVLTEVPNRLTLEGHTDAKPMGSGAGYSNWELSSDRANASRRELLAGGLDDARVLRVQG 251 Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342 A DP+N NRRI I+V R+ Sbjct: 252 LAASVPFDQQDPLNPINRRISIIVMTRE 279 >gi|291613013|ref|YP_003523170.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291583125|gb|ADE10783.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 341 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 63/338 (18%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 E+ + I+IK KKVA ++ G+WKI YADF+T +MAFFL+MW++ +T + I + Sbjct: 4 EDKRPIVIKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGISE 60 Query: 68 YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YF P LM + + I + +T+ + +K G +K+ Sbjct: 61 YFKTPLKVALMGGTG----------SGDSSSIIKGGGQDLTRATGQVKSGELLPEKKVIN 110 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 L+ + Q E + ++ EK KDL ++EK+I+ + + + Sbjct: 111 LK--------ATQEEFERLERKKELEKLKDL--KANIEKAIDTD-------------VKL 147 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K+ K +L + T G+ + I+D++N PMF SS P Sbjct: 148 KKYKNQ----------------------ILLDLTTEGLRVQIVDEKNRPMFQSGSSELEP 185 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 T +L +IG++L IS+ GHTDA P+ R NW LS DRA ++ + L+ G+ Sbjct: 186 YTKDILHEIGQMLNTMPNKISLSGHTDAQPYVTADRHYSNWELSADRANASRRELINGGL 245 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +ED+I ++ G + L + P+N NRRI I+V +++ Sbjct: 246 AEDKIVRVVGLSSAVLFDKAQPLNPINRRISIIVMNKR 283 >gi|83955101|ref|ZP_00963757.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1] gi|83840430|gb|EAP79603.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1] Length = 394 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 101/347 (29%), Positives = 150/347 (43%), Gaps = 58/347 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN----P 71 + KK I+ ++ G WK+ YADFMT +MAFFL+MWI+++ D+ + I +YF P Sbjct: 9 VFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFTNATLP 68 Query: 72 FGKNLM-----------TASKGIFDEQNPPERSSQNKIDLSI-------DEHITKNSVDL 113 G ++ TAS G + S KID DE T + Sbjct: 69 GGSGVLDGATLGPPGTLTASNGAIVARG----SELGKIDDPASAKWEIRDETATSVPDET 124 Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 +IGS + + N + T D+ D K LE+ I Sbjct: 125 QIGSEDGAHENPAAANVASASQTASDGSKSAGDATIDNVHALDNEKFKKLEQDI------ 178 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 + AM+ L D + K ++F+ T G+ I IIDQ Sbjct: 179 ---------LQAMQENPDL----------------DPLKKNLIFQQTPEGLQIQIIDQEG 213 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292 PMF + T +L +G+ LA I++ GHTDA F N + DNW LS DRA Sbjct: 214 QPMFYSGRAEMQGATDQLLANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRA 273 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 + +V SGV+ DRI ++SG A + +P +++NRRI + V+ Sbjct: 274 NATRRVFEASGVARDRIIRVSGLADTAPLVPENPTDASNRRITVSVQ 320 >gi|152985187|ref|YP_001351001.1| flagellar motor protein MotB [Pseudomonas aeruginosa PA7] gi|150960345|gb|ABR82370.1| chemotaxis protein MotB [Pseudomonas aeruginosa PA7] Length = 342 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 105/336 (31%), Positives = 156/336 (46%), Gaps = 57/336 (16%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 +P G + E +S IDL G T + L Sbjct: 61 QDPIGFS---------------ESASPYVIDL---------------GGTPTPAPDKTLN 90 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +S +S + S +D + D +S L + + +E L Sbjct: 91 PQVQAQPDSNES---RISPEQDHQVNADQAES--LAEQVERERLALL------------- 132 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 LQ+L K+ + + + FE TR G+ I I+D N PMFD S+ P Sbjct: 133 ---LQELQNKVDENP---MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + E + ISI GHTDA P+ N NW LS +RA +A + L+ G E Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPET 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +IS++ G+A RL DP+N NRRIDI+V R+ Sbjct: 247 QISQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282 >gi|114570105|ref|YP_756785.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114340567|gb|ABI65847.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 307 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 41/309 (13%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI-FDEQNPP 90 +WK+ YADF+T +MAFFL+MW+IN T + K+ I YF P + + G +P Sbjct: 25 AWKVAYADFVTAMMAFFLLMWLINTTTPEQKRGIADYFAPASVSPSNSGSGAPLAGTSPG 84 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + Q D S + + + L N + + Q E + + + + S + Sbjct: 85 DDGVQGSGDSSQRQRLAPTAPQL-----NDRDRQQTPEGSPEAVESVTE---ITASAMAE 136 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 +++ +D + S+ + AM+ L +L+ Sbjct: 137 AQQRRDAAELHSASMSLRQ---------------AMQEMPELAELSNH------------ 169 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 VL + T G+ I +IDQ PMFD ++ P + +L+ + + +S+ G Sbjct: 170 ----VLIDETPEGLRIQLIDQEGRPMFDPGATRPNERAVTLLRAVARIAERLPNRLSVAG 225 Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HTD++P A NW LS DRA +A VL ++G+S+DRI ++ G A DP Sbjct: 226 HTDSAPAAPGADYTNWELSADRANAARSVLQRAGISDDRIYEVRGKAGSEPLYPDDPYMP 285 Query: 330 ANRRIDILV 338 NRRI +++ Sbjct: 286 GNRRISVVL 294 >gi|83944198|ref|ZP_00956654.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36] gi|83845065|gb|EAP82946.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36] Length = 394 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 101/347 (29%), Positives = 150/347 (43%), Gaps = 58/347 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN----P 71 + KK I+ ++ G WK+ YADFMT +MAFFL+MWI+++ D+ + I +YF P Sbjct: 9 VFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFTNATLP 68 Query: 72 FGKNLM-----------TASKGIFDEQNPPERSSQNKIDLSI-------DEHITKNSVDL 113 G ++ TAS G + S KID DE T + Sbjct: 69 GGSGVLDGATLGPPGTLTASNGAIVARG----SELGKIDDPASAKWEIRDETATSVPDET 124 Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 +IGS + + N + T D+ D K LE+ I Sbjct: 125 QIGSEDGAHENPAAANVASASQAASDGSKSAGDATIDNVHALDNEKFKKLEQDI------ 178 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 + AM+ L D + K ++F+ T G+ I IIDQ Sbjct: 179 ---------LQAMQENPDL----------------DPLKKNLIFQQTPEGLQIQIIDQEG 213 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292 PMF + T +L +G+ LA I++ GHTDA F N + DNW LS DRA Sbjct: 214 QPMFYSGRAEMQGATDQLLANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRA 273 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 + +V SGV+ DRI ++SG A + +P +++NRRI + V+ Sbjct: 274 NATRRVFEASGVARDRIIRVSGLADTAPLVPENPTDASNRRITVSVQ 320 >gi|114797285|ref|YP_758982.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444] gi|114737459|gb|ABI75584.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444] Length = 287 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 149/324 (45%), Gaps = 52/324 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 IIK+K ++ G+WK+ YADF+T +MAFFL+MW++NAT ++ +K I YFNP Sbjct: 12 IIKRKKVYKADGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYFNP---- 67 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 P R S D I K+G+ +K Sbjct: 68 -----------TIPISRISGGGSDGLNGSSIFSEDTYAKMGTGANRK------------- 103 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 E +N D K KD T+ ++ K+ ++EK +A LQ L Sbjct: 104 -----ETVENPAYGDG-KTKDAQDQTEDVDTLAKQ--------AEEKQIA----DELQGL 145 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + +S+ + + + ++ + + GI++ I D +TP+F S P + ++ + Sbjct: 146 KESLSAE-----SRQLSEHLMIKMSPEGIVLEITDSESTPLFPLGRSEPSETMVQLIDVV 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E A I I GHTD+ +RN A DNW LS DRA +A ++L ++ + DRI ++SG Sbjct: 201 AESFAEFDNDIKIVGHTDSHRYRNGAIYDNWNLSADRANAARRLLSRADIPSDRIREVSG 260 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A + DP + NRRI I + Sbjct: 261 KADTDPLVKDDPQAAQNRRISITI 284 >gi|71906362|ref|YP_283949.1| flagellar motor protein MotB [Dechloromonas aromatica RCB] gi|71845983|gb|AAZ45479.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 316 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 151/327 (46%), Gaps = 63/327 (19%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73 I+IK+K + + G+WKI YADF+T +MAFFL+MW++ +T + I +F NP Sbjct: 9 IVIKRKKVVAGGAHG-GAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGIADFFQNPL- 66 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 +Q I + +T+ S +K G KK Sbjct: 67 ---------KVSQQGGAGSGDATSILQGGGKDLTRQSGQVKRGDVEAKKSTS-------- 109 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 S Q+E + ++ E+ + L S +EK I + P L++ K Sbjct: 110 FSKEAQAEFRR----KEQERLESLKAS--IEKMIEQS-----PQLAQFK----------- 147 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 K +L + T G+ I I+D++N PMFD SS+ P T +L+ Sbjct: 148 -------------------KQMLLDITSEGLRIQIVDEQNRPMFDSSSADLKPYTRDILR 188 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +IG+ L + IS+ GHTDA+ F + NW LS +RA ++ + L+ G+ + ++ + Sbjct: 189 QIGKALNGVSNRISLAGHTDAAQFAGGEKGFSNWELSANRANASRRELVVGGMDDSKVLR 248 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 + G A L +DP+NS NRRI I+V Sbjct: 249 VVGLASTVLFDKNDPLNSVNRRISIVV 275 >gi|254419004|ref|ZP_05032728.1| OmpA family protein [Brevundimonas sp. BAL3] gi|196185181|gb|EDX80157.1| OmpA family protein [Brevundimonas sp. BAL3] Length = 297 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/336 (27%), Positives = 144/336 (42%), Gaps = 61/336 (18%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +D+ I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN TD + KK I +YF Sbjct: 2 SDRPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKKGIAEYFA 61 Query: 71 PFGKNLMTASKG------IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 P + T+ G + P SQ S+ E + Sbjct: 62 PASVSETTSGSGGILGGTALGDDGPKSSGSQ-----SVLEQLAP---------------- 100 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 E ++ T S L+ I K E ++ Sbjct: 101 ----------------EAPADATTAGSSTNLASASEAALQAEIQKREAAEFASAAESLRQ 144 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 AM+ L +L+K++ + + T G+ I ++DQ MFD +S+ P Sbjct: 145 AMQSMPELAELSKQL----------------IVDQTPEGLRIQLVDQEGRSMFDNNSARP 188 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKS 302 V+L+ + +V+ ISI GHT A+P N A +W LS +RA + VL + Sbjct: 189 NARAQVLLRAVAKVINQLPNRISITGHTSATPGSNRASGPADWTLSSERANGSRLVLQSA 248 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 GV DR+ ++G A DP + NRRI I++ Sbjct: 249 GVDADRVYSVAGKAGSDPLYPDDPTLAGNRRIAIVL 284 >gi|15600146|ref|NP_253640.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAO1] gi|107104052|ref|ZP_01367970.1| hypothetical protein PaerPA_01005125 [Pseudomonas aeruginosa PACS2] gi|116053102|ref|YP_793421.1| flagellar motor protein MotB [Pseudomonas aeruginosa UCBPP-PA14] gi|218894048|ref|YP_002442917.1| flagellar motor protein MotB [Pseudomonas aeruginosa LESB58] gi|254238332|ref|ZP_04931655.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719] gi|254244159|ref|ZP_04937481.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192] gi|313109955|ref|ZP_07795882.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016] gi|9951234|gb|AAG08338.1|AE004908_4 chemotaxis protein MotB [Pseudomonas aeruginosa PAO1] gi|115588323|gb|ABJ14338.1| chemotaxis protein MotB [Pseudomonas aeruginosa UCBPP-PA14] gi|126170263|gb|EAZ55774.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719] gi|126197537|gb|EAZ61600.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192] gi|218774276|emb|CAW30093.1| chemotaxis protein MotB [Pseudomonas aeruginosa LESB58] gi|310882384|gb|EFQ40978.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016] Length = 347 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 154/335 (45%), Gaps = 57/335 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 +P G + +AS + D P + ++ + N + S Q Q Sbjct: 61 QDPIGFS-ESASPYVIDLGGTPTPAPDKTLNPQVQAQPDSNESRI---SPEQDHQV---- 112 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N+ Q+E+ + R+ LA+ Sbjct: 113 -------NADQAENLAEQVERER--------------------------------LAL-- 131 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 LQ+L K+ + + + FE TR G+ I I+D N PMFD S+ P Sbjct: 132 --LLQELQNKVDENP---MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + E + ISI GHTDA P+ N NW LS +RA +A + L+ G E Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +I+++ G+A RL DP+N NRRIDI+V R+ Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRK 281 >gi|296391793|ref|ZP_06881268.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAb1] Length = 347 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 154/335 (45%), Gaps = 57/335 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 +P G + +AS + D P + ++ + N + S Q Q Sbjct: 61 QDPIGFS-ESASPYVIDLGGTPTPAPDKTLNPQVQAQPDSNESRI---SPEQDHQV---- 112 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N+ Q+E+ + R+ LA+ Sbjct: 113 -------NADQAENLAEQVERER--------------------------------LAL-- 131 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 LQ+L K+ + + + FE TR G+ I I+D N PMFD S+ P Sbjct: 132 --LLQELQNKVDENP---MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + E + ISI GHTDA P+ N NW LS +RA +A + L+ G E Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +I+++ G+A RL DP+N NRRIDI+V R+ Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRK 281 >gi|285019703|ref|YP_003377414.1| flagellar motor protein [Xanthomonas albilineans GPE PC73] gi|283474921|emb|CBA17420.1| probable flagellar motor protein [Xanthomonas albilineans] Length = 383 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 62/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ YADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 ETKSTVIIRRVKKVQGGGHHGGAWKVAYADFVTAMMAFFLVLWLVAATTKEQRAAIAEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ P +S + I K+G + + QR Sbjct: 63 RNPSPLAGKSPAPSPGMAG----PGGASTSMI---------------KLGGSGE---LQR 100 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 N + S S + + K S R+ EK + +++++I+K + L P + Sbjct: 101 GNNKDPFGSKSLKGDDSKIS-QREKEKQRLESLMQEMKEAIDKSQA--LEPFKDQ----- 152 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D+ N PMFD S++ P Sbjct: 153 ----------------------------LLLDLTPDGLRIQIVDKENRPMFDLGSAVLKP 184 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVS 305 T +L ++ + ISI GHTD + + NW LS DRA +A + L+ G+S Sbjct: 185 YTRGILHELSGFINQVPNHISITGHTDVTQYSGKNGYSNWELSADRANAARRELVAGGMS 244 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ED++S++ G + L P N NRRI I+V Sbjct: 245 EDKVSRVVGLSSSVLFDKQVPNNPINRRISIVV 277 >gi|302878239|ref|YP_003846803.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581028|gb|ADL55039.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 328 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 95/338 (28%), Positives = 159/338 (47%), Gaps = 63/338 (18%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +N + I+IK KKVA ++ G+WKI YADF+T +MAFFL+MW++ +T I Q Sbjct: 5 KNKRPIVIKRIKKVA---AGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLAGISQ 61 Query: 68 YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YF P L S + I + +T+ + +K G K+ Sbjct: 62 YFKTPLKVALAGGSG----------SGDSSSIIKGGGKDLTRTTGQVKAGDVASDKR--- 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 I + SQQ E+ + +E+ K++ K +L++SI K A+ Sbjct: 109 ----IINVKESQQ-EYLR------AEREKEMTKLKELKESIEK---------------AI 142 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++L+ +I L + T G+ I I+D++N PMF + P Sbjct: 143 DNSEKLKQFKSQI----------------LLDITSEGLRIQIVDEKNRPMFQSGRAQLEP 186 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 T +L IG+ L +SI GHTDAS + I NW LS DRA ++ + L+ G+ Sbjct: 187 YTREILHAIGQTLNDVPNKVSISGHTDASVYGGGGIGYSNWELSADRANASRRELIAGGM 246 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++I ++ G + L DP++ NRRI +++ +++ Sbjct: 247 ADEKIVRVVGLSSAVLFKKEDPLSPTNRRISLIIMNKK 284 >gi|58038613|ref|YP_190577.1| chemotaxis MotB protein [Gluconobacter oxydans 621H] gi|58001027|gb|AAW59921.1| Chemotaxis MotB protein [Gluconobacter oxydans 621H] Length = 311 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 153/325 (47%), Gaps = 33/325 (10%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K+ + + ++ G+WKI YADF+T +MAFFLVMW+INAT +D +K I +FNP Sbjct: 12 IIIKRFDVVEGGHHGGAWKIAYADFVTAMMAFFLVMWLINATTEDQRKGIANFFNPMA-- 69 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHIT--KNSVDLKIGSTNQKKQYQRLENNIFY 133 ++ + PP + + + E ++ V LK G K QY + Sbjct: 70 -------VWKDMPPPV----DNVLPAAPEPVSLETKPVALKPG----KDQYGKAPQGA-- 112 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + SQQ + T S + D + I E P S +K R + Q Sbjct: 113 -AGSQQGK----DQTAPSVHTAQIVVLHDSQ--IQPGEPPVTP--SAQKAEQEARAEAAQ 163 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + IS+T +AD + V G+ + I D + PMF S P P + +++ Sbjct: 164 KIQALISNTPE--LAD-VRSQVSVTVGDDGLHVQIADSDHQPMFAMGQSSPNPHAVQLIK 220 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I L +SI G+TDA+P+R NW LS RA + ++++SG + R+ +S Sbjct: 221 AIVPYLEKLHGKLSIAGYTDAAPYRPGQLSNWSLSSARAVAVRDLVVQSGFPDRRLKSVS 280 Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338 G+A L + P+N NRRI +++ Sbjct: 281 GYADRNLFDPTQPLNPRNRRIVLVL 305 >gi|84502387|ref|ZP_01000523.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597] gi|84389199|gb|EAQ01996.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597] Length = 339 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 33/319 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 WK+ YADFMT +MAFFL++WI+ A+D++ + + YF P ++ + G Sbjct: 26 WKVAYADFMTAMMAFFLLLWILAASDEEALRGLADYFTPS----LSQAGG---------- 71 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL----ENNIFYLSNSQQSEHCKNSLT 148 Q +D +I I N G +N RL + N + +S+ + + + Sbjct: 72 KGQGMLDGTI---IAPNG---DQGGSNTPDGNTRLPSFGQENPLAVFDSRLRDEATDVIV 125 Query: 149 R--DSEKG----KDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISS 201 E G K + + D E E+ L ++ +K R+ ++ L ++I Sbjct: 126 EYETKEDGTMEPKSMGEGEDEEDGSAAEQAAERQALEEQYQAEVKEREANMERLEEEIRR 185 Query: 202 TLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + V +++ + + F+ T G+L+ I+D+ MF + S+ T +++ IGE + Sbjct: 186 HIQERVDLEDLGENLRFDRTSEGLLVQIMDKEGRSMFARGSARVDSRTRDLIRIIGESIV 245 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTDA PF N+ NW LS DRA + +VL+ +GVS RI +ISG A Sbjct: 246 DMQNAIVITGHTDAVPFVNNLGYSNWELSADRANATRRVLIDTGVSPARIKRISGLASTD 305 Query: 320 LKIASDPMNSANRRIDILV 338 A DP + NRRI +L+ Sbjct: 306 PLNADDPEAAENRRIGVLL 324 >gi|209964663|ref|YP_002297578.1| chemotaxis MotB protein [Rhodospirillum centenum SW] gi|209958129|gb|ACI98765.1| chemotaxis MotB protein [Rhodospirillum centenum SW] Length = 364 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 45/331 (13%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------------FGKNLMT 78 +WK+ YADF+T +MAFFL++W++N T + K+ I YF+P G +T Sbjct: 28 AWKVAYADFVTAMMAFFLLLWLLNVTTSEQKQGIADYFSPASPSKQESGAGGVLGGQTIT 87 Query: 79 ASKGIFDEQNPPE--------RSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRLEN 129 ++ +PP+ +S N + D + TK D Q K Q Sbjct: 88 VPGAKINQSSPPQLTVPVPSMPASANSEEQVEDFDSSTKGRPD-----GTQDKVGQGEAG 142 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDL-CKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +S+ K R ++K +D +L++++ K E ++E A+++ Sbjct: 143 DSGGPGDSRLDALEKAGEIRQADKNRDGKIDEKELKEALAKLEQEQFQRTAQELRQAIQQ 202 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L++L++ LV DN T G+ I ++DQ MF S+ LP+T Sbjct: 203 VPELRELSQN-------LVIDN---------TPEGLRIQLVDQEGYSMFPSGSANMLPQT 246 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ + + + +S+ GHTD++PF +R NW LS +RA ++ + L+ +GV E+ Sbjct: 247 AQLMALVAQAVGKLPNHLSVSGHTDSTPFAAGSSRSNWDLSTERANASVRALLAAGVPEN 306 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 RI +++G A DP + NRR+ I++ Sbjct: 307 RIDQVTGRADRDHLFPDDPRSPRNRRVSIVL 337 >gi|209963560|ref|YP_002296475.1| chemotaxis MotB protein [Rhodospirillum centenum SW] gi|7025363|gb|AAF35851.1|AF220005_2 lateral flagellar motor protein MotB [Rhodospirillum centenum] gi|209957026|gb|ACI97662.1| chemotaxis MotB protein [Rhodospirillum centenum SW] Length = 325 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 33/333 (9%) Query: 15 IIIKKKVAID-DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 I+IK++ + D G+WKI YADF+T +MAFF+++W++N T + + I YFNP Sbjct: 10 IVIKRRAQEESDELEGNGTWKIAYADFVTAMMAFFMLLWLVNVTTPEQRHGIADYFNPIA 69 Query: 74 -KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + + + G Q+ + S E I ++ + + + L++ Sbjct: 70 VSDANSGANGQLAGQSVAREGALTSNAASAWETIPT----ARVPTLSPPGPDRELDDGEG 125 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK---EENYFLPPLSKEKILAMKRK 189 +++Q++ + G + LE+ + + EE F ++I + Sbjct: 126 GGASAQENAESAPA------DGNGTPMTAALEQQLQQVAAEEQSF------DRI-----E 168 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++D + +S + ++ + ++FE T G+ I I D+ + MFD ++ + Sbjct: 169 QSVRD------ALMSAVDLADLSQNLVFERTADGLRIQITDRPHFSMFDSGATDLNGRAV 222 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E L+ I+I GHTD PF AR NW LS DRA +A +VL++ G+ R Sbjct: 223 TLLGIVAEALSGVPNRIAISGHTDGRPFAANARYGNWELSADRANAARRVLLQKGIQPGR 282 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++++ G A + DP + NRRI I+V R Sbjct: 283 VARVEGLADTLHLLPEDPGDPRNRRISIIVMRR 315 >gi|288958120|ref|YP_003448461.1| chemotaxis protein [Azospirillum sp. B510] gi|288910428|dbj|BAI71917.1| chemotaxis protein [Azospirillum sp. B510] Length = 386 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 147/345 (42%), Gaps = 57/345 (16%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-------GKNLMTASKGI- 83 +WK+ YADF+T +MAFFL++W++N T D +K I YF+P G M K I Sbjct: 28 AWKVAYADFVTAMMAFFLLLWLLNVTTSDQRKGIADYFSPVSVSREQSGSGGMLGGKTIT 87 Query: 84 ---------------FDEQNPPERSSQNKIDLSIDEHIT-------------KNSVDLKI 115 PP SSQ D T K + D I Sbjct: 88 VPGAQVSPSSPMSADVPVSGPPGYSSQQSDDADDPTEATSGPGQGTGPGKPAKAAPDADI 147 Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 +QK R E F + ++ + EK D + +++++N + Sbjct: 148 --ADQKPNETRAE---FQKRMEEMAKQLGIPGQKPGEKLSDFGER--VKEAMNSLQG--- 197 Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNT 234 A K ++ Q A +I + + + + + ++ + T G+ I I+DQ Sbjct: 198 ---------AAKEARQFQQAATEIRQAIQSVPELEPLAQNLMIDQTPEGLRIQIVDQDRV 248 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAY 293 MF S P+T ++Q++ + L +SI GHTD+SPF RDNW LS +RA Sbjct: 249 SMFPAGSGQMYPQTRQLVQQVAKALTKLPNKLSISGHTDSSPFPAGSGRDNWDLSTERAN 308 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + + L+ G++ RI + G A +A P + NRRI +++ Sbjct: 309 ATRRALLAGGINPSRIQNVVGKADTDPLVADQPNSPRNRRITMVL 353 >gi|89068739|ref|ZP_01156125.1| MotB [Oceanicola granulosus HTCC2516] gi|89045702|gb|EAR51764.1| MotB [Oceanicola granulosus HTCC2516] Length = 345 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 23/341 (6%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q III++ ++ G WK+ YADFMT +MAFFL+MWII A+D++ + I YF P Sbjct: 6 QPIIIRRMTEDAHDGHHGGGWKVAYADFMTAMMAFFLLMWIIAASDEEKLRGIADYFTPS 65 Query: 73 GKNLMTASKGIFD-EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK----QYQRL 127 A G+ D E + + + + +N +++ T + +Y + Sbjct: 66 LVTADGAGSGLLDGEAVEGQGTRGGGVVPELPSFGQENPLEISANRTPEAPSVIVEYVPV 125 Query: 128 ENNIFYLSNSQQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 E+ L + + H D E + E S + LA Sbjct: 126 ED----LGDDPFARLHAAAGEVVDGETTPLDGAGSAPEASEGEAGTAASEAALAAAELAE 181 Query: 187 KRKKRLQDLAKKISSTLS-----GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 +R L+ L ++ ++ A+N+ L + T G+ I+D MF S Sbjct: 182 QRAAALEVLRGEVEERIAEDPELATFAENL----LVDATDLGLRFQIVDHEGVAMFRSGS 237 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD---NWRLSLDRAYSAYQV 298 + T ++ +GE + ++I GHTD+ PF ARD NW LS DRA +A + Sbjct: 238 AEIEESTRELIGVVGETIRGLPYPVAITGHTDSVPFSG-ARDGYSNWELSADRANAARRT 296 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 L+ +GV RI +ISG A L++ P NRRI++L++ Sbjct: 297 LIAAGVDAARIVEISGLAATELRVPDIPDAPENRRIEVLMQ 337 >gi|82702437|ref|YP_412003.1| flagellar motor protein MotB [Nitrosospira multiformis ATCC 25196] gi|82410502|gb|ABB74611.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] Length = 308 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 71/333 (21%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71 Q I+ KKV + + G WKI YADF+T +MAFFL+MW++ + + I YF P Sbjct: 5 QHRIVIKKVR-RQSQGHGGQWKIAYADFVTAMMAFFLLMWLLGSATRAQLQGISDYFMKP 63 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 ++ PER IGS ++ Q Sbjct: 64 L--------------ESVPERD---------------------IGSGDRTSLIQ------ 82 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS-KEKILAMKRK- 189 K+ + RD + + TD++ S PLS + L ++R+ Sbjct: 83 ---------GGGKDLMRRDGQ-----VQKTDVDSSEK--------PLSLRAAQLELERRD 120 Query: 190 -KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +RL+DL +++ + S K +L + T G+ I IID +N PMF + + P Sbjct: 121 ARRLEDLKRRLERLIESNPTMHEFRKQLLLDITTEGLRIQIIDDKNRPMFALARAELEPH 180 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVS 305 T +LQK+G VL +S+ GHTD++P+ + ++ NW LS DRA ++ + L+ G++ Sbjct: 181 TREILQKLGSVLNEMPNKLSLSGHTDSTPYASGEKNYSNWELSADRANASRRELILGGMN 240 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E +I ++ G + L +DP N NRRI I+V Sbjct: 241 EQKIMRVVGLSSAVLFDRNDPTNPVNRRISIIV 273 >gi|325981670|ref|YP_004294072.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531189|gb|ADZ25910.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 312 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 68/329 (20%) Query: 15 IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71 I+IK KKVA ++ G+WKI YADF+T +MAFFL+MW++ ++ + I +YF P Sbjct: 10 IVIKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSSTQSQLEGISEYFKTP 66 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 M S SI E NS+ +K G T+ +Q+ +++N Sbjct: 67 LKIAFMGGS--------------------SIGES---NSL-IKGGGTDLTRQHGQVKNGE 102 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 ++ + K + + +LEK L L K+ A++ + Sbjct: 103 IITNDKANKQAIKV-----------IKERIELEK---------LEGLKKKIEEAIQANPQ 142 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 LQ A ++ L + T G+ I I+D++N PMF + P T + Sbjct: 143 LQRFANQL----------------LLDITTDGLRIQIVDEQNRPMFALGRAELQPYTRTI 186 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG++L T IS+ GHTDA PF + NW LS DRA ++ + L+ G+ +++ Sbjct: 187 LREIGKMLNEVTNKISLSGHTDAKPFPSGDKGYSNWELSADRANASRRELIVGGMDANKM 246 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ G + L DP+N NRRI I+V Sbjct: 247 LQVVGLSSAVLFDKDDPLNPINRRISIVV 275 >gi|134294329|ref|YP_001118064.1| flagellar motor protein MotB [Burkholderia vietnamiensis G4] gi|134137486|gb|ABO53229.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 338 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 156/330 (47%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSATPVQLKGIAEYFNTPLQA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI ++ + G+T + L + + Sbjct: 69 ALFGSG----------DRSSQ---DSSIINGGGRDLSSVDAGTTRRTDGSTSLADRV--- 112 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 ++KG+D ++ + +I + E L L + + A++ L+ Sbjct: 113 ----------------AKKGEDTAQA-QAQGAIERREQARLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS+ P +L++ Sbjct: 156 FRQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSNNVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|167571659|ref|ZP_02364533.1| flagellar motor protein MotB [Burkholderia oklahomensis C6786] Length = 340 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 53/334 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ ++ G+T + L + I Sbjct: 65 PLKAAIFGSG---------DRSAD---DSSIVKGGGRDISSIEAGATRRTDGSTSLADRI 112 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S + + SL R + + R Sbjct: 113 VKKSEDEALAQAQGSLER-------------------------------------REQAR 135 Query: 192 LQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L DL K+ + + + + + ++T G+ I I+D + PMF SS P Sbjct: 136 LHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRD 195 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E + Sbjct: 196 ILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAK 255 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + ++ G A + +DP++ NRRI I+V +R+ Sbjct: 256 VLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|186477722|ref|YP_001859192.1| flagellar motor protein MotB [Burkholderia phymatum STM815] gi|184194181|gb|ACC72146.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 369 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/335 (26%), Positives = 151/335 (45%), Gaps = 56/335 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKR-AAPKKGGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P L + D P D+S D+ + D GSTN+ Sbjct: 61 YFNQPLKITLWGGDRSAVDSSQIPGGGR----DISTDKDGITHQTD---GSTNR------ 107 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +EH + + D L+ ++ + E Sbjct: 108 -------------AEHT-------AARADDQALQ-QLQGAVERREQV------------- 133 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 RL DL K+ + + + V + + ++T G+ I I+D + PMF + +I Sbjct: 134 ----RLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLQGLRIEIVDTQKRPMFATAQAIVQ 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +LQ IG L I ++GHTDA P+ + NW LS DRA ++ + L+ G Sbjct: 190 PYMHDILQAIGNTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E ++ ++ G A + +DP++ NRRI I+V Sbjct: 250 MDEAKVLRVLGLASTQNLNKADPLDPENRRISIIV 284 >gi|167564510|ref|ZP_02357426.1| flagellar motor protein MotB [Burkholderia oklahomensis EO147] Length = 340 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 155/334 (46%), Gaps = 53/334 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ ++ G+T + L + I Sbjct: 65 PLKAAIFGSG---------DRSAD---DSSIVKGGGRDISSIEAGATRRTDGSTSLADRI 112 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S + + SL R +E++ R Sbjct: 113 VKKSEDEALAQAQGSLER------------------------------REQV-------R 135 Query: 192 LQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L DL K+ + + + + + ++T G+ I I+D + PMF SS P Sbjct: 136 LHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRD 195 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E + Sbjct: 196 ILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAK 255 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + ++ G A + +DP++ NRRI I+V +R+ Sbjct: 256 VLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|190572619|ref|YP_001970464.1| flagellar motor protein MotB [Stenotrophomonas maltophilia K279a] gi|190010541|emb|CAQ44150.1| putative chemotaxis protein [Stenotrophomonas maltophilia K279a] Length = 312 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 65/334 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN +I+++ ++ GSWK+ YADF+T +MAFFLV+W++ T+ + + AI +YF Sbjct: 3 ENKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P T + G+ P +S + I L + D+ G++N Q Q+ Sbjct: 63 RNPSPLSGQNATPAPGMAG----PGGASTSMIKLG-------GATDISRGNSNDPFQNQK 111 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + QQ RD ++ + L K +L+++I++ + L P + Sbjct: 112 --EAVPQPVDQQQ---------RDKQQLEALMK--ELQEAISRSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD S+ P Sbjct: 152 ----------------------------LLLDLTPEGLRIQIVDKQNRPMFDLGSATLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 T +L ++ E L H IS+ GHTD + + + AR NW LS DRA +A + L+ G+ Sbjct: 184 YTQQILHELAEYLNHVPNRISLTGHTDITAY-SAARGYGNWELSADRANAARRALVDGGL 242 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +I+++ G + L +DP N NRRI I+V Sbjct: 243 EDSKITRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|167587857|ref|ZP_02380245.1| flagellar motor protein MotB [Burkholderia ubonensis Bu] Length = 340 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 54/331 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLQA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI ++ + GST + L + + Sbjct: 69 ALFGSG----------DRSSQ---DSSIINGGGRDISSVDAGSTRRTDGSTSLADRVAKK 115 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 ++ + + SL R + + RL D Sbjct: 116 NDDEAQAQAQGSLER-------------------------------------REQARLHD 138 Query: 195 LAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L K+ + + + + + ++T G+ I I+D + PMF SS P +L+ Sbjct: 139 LQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILR 198 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ + Sbjct: 199 EIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDESKVLR 258 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + +DP++ NRRI ++V +R+ Sbjct: 259 VLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|300312289|ref|YP_003776381.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] gi|300075074|gb|ADJ64473.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 60/329 (18%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K++ ++ G+WKI YADF+T +MAFFL+MW++ +T I +YF K Sbjct: 9 IIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLKV 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 M G D N + + +T+ L+ G T+ + Q L+ Sbjct: 69 AMAGGSGSGD---------ANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQ------ 113 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 Q E K TR E L K+ D ++ + +N L Sbjct: 114 --AQQELEKMERTRLEELKSRLEKAIDSNPTLKQFKNQLL-------------------- 151 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + T G+ I I+D++N PMF +S+ P T +L +I Sbjct: 152 ---------------------IDITSEGLRIQIVDEKNRPMFALASAQLQPYTKEILHEI 190 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G L IS+ GHTDA+P+ + NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 191 GRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGGMDESKVLRVV 250 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G + L DP N NRRI I+V +++ Sbjct: 251 GLSSAVLLDKEDPFNPINRRISIIVMNKK 279 >gi|253998520|ref|YP_003050583.1| flagellar motor protein MotB [Methylovorus sp. SIP3-4] gi|313200598|ref|YP_004039256.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|253985199|gb|ACT50056.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] gi|312439914|gb|ADQ84020.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 316 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 97/338 (28%), Positives = 155/338 (45%), Gaps = 66/338 (19%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 E+ + II+K KKVA ++ G+WKI YADF+T +MAFFL+MW++ +T T + I + Sbjct: 3 EDTKPIIVKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKATLEGISE 59 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YF P L Q P ++ + + + +TK +K Sbjct: 60 YFKMPLKVAL----------QGGPSVAASDSVLKGGGKDLTKKQAQVK------------ 97 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 D KGK K D+ K+ L +EK+ + Sbjct: 98 ---------------------PVDGPKGKQ--KEVDI-----KDAKTALEKAEQEKLAEL 129 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K K + A S+TLS K +L + T G+ I I+D++N PMF S + P Sbjct: 130 KLK---IEEAIDASATLS-----KFKKQLLIDITSEGLRIQIVDEQNRPMFASSKAELQP 181 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L +IG +L IS+ GHTDA P+ + NW LS DRA ++ + L+ G+ Sbjct: 182 YAKQILHEIGSMLNDVPNKISLSGHTDAVPYPTGDKGYSNWELSSDRANASRRELVAGGM 241 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G + L +P+N NRRI I++ +++ Sbjct: 242 DESKLLRVVGLSSASLFDKENPLNPVNRRISIIIMNKK 279 >gi|330815146|ref|YP_004358851.1| MotB [Burkholderia gladioli BSR3] gi|327367539|gb|AEA58895.1| MotB [Burkholderia gladioli BSR3] Length = 361 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW+++A K I YFN P Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L +RSS D SI I D+ T R + L Sbjct: 69 ALFGNG----------DRSSH---DSSI---INGGGSDI----TRSDSGTTRRTDGSTML 108 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 +N R ++ G+D D S +++E L L + + A++ L+ Sbjct: 109 AN------------RLTQAGRDDEHDVD-RGSQDRQEQVRLHDLQIKLMAAIEANPVLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T TG+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLTGLRIEIVDTQKRPMFALSSDAVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIVMQGHTDAVPYSGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +G A + +DP++ NRRI ILV +R+ Sbjct: 260 TGLASTQNLNKADPLDPENRRISILVLNRK 289 >gi|254525153|ref|ZP_05137208.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14] gi|219722744|gb|EED41269.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14] Length = 320 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 65/334 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +I+++ ++ GSWK+ YADF+T +MAFFLV+W++ +T + AI +YF Sbjct: 3 ETKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P T + G+ P +S + I L + D+ G++N Q Q+ Sbjct: 63 RNPSPLSGKSATPAPGMAG----PGGASTSMIKLG-------GATDVSRGNSNDPFQNQK 111 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + QQ RD ++ + L K +L+++I+K + L P + Sbjct: 112 --EAVPQPLDQQQ---------RDKQQLEQLMK--ELQEAISKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD S+ P Sbjct: 152 ----------------------------LLLDLTPEGLRIQIVDKQNRPMFDLGSATLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 T +L ++ E L H IS+ GHTD + + + AR NW LS DRA +A + L+ G+ Sbjct: 184 YTQQILHELAEYLNHVPNRISLTGHTDITAY-SAARGYGNWELSADRANAARRALIDGGL 242 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +I+++ G + L +DP N NRRI I+V Sbjct: 243 EDSKITRVVGLSSSVLFDKADPQNPINRRISIVV 276 >gi|194364216|ref|YP_002026826.1| flagellar motor protein MotB [Stenotrophomonas maltophilia R551-3] gi|194347020|gb|ACF50143.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 158/334 (47%), Gaps = 65/334 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +I+++ ++ GSWK+ YADF+T +MAFFLV+W++ +T + AI +YF Sbjct: 3 ETKPTVIVRRVRKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P + T + G+ P +S + I L + D+ GS+N Q Q+ Sbjct: 63 RNPSPLVGSSATPAPGMAG----PGGASTSMIKLG-------GATDISRGSSNDPFQNQK 111 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + QQ RD ++ + L K +L+++I++ + L P + Sbjct: 112 --EAVPQPVDQQQ---------RDKQQLEALMK--ELQEAISRSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD S+ P Sbjct: 152 ----------------------------LLLDLTPEGLRIQIVDKQNRPMFDLGSATLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 T +L ++ E L H IS+ GHTD + + + AR NW LS DRA +A + L+ G+ Sbjct: 184 YTQQILHELAEYLNHVPNRISLTGHTDITAY-SAARGYGNWELSADRANAARRALIDGGL 242 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +I+++ G + L +DP N NRRI I+V Sbjct: 243 EDSKITRVVGLSSSVLFDKADPQNPINRRISIVV 276 >gi|91776291|ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus flagellatus KT] gi|91710278|gb|ABE50206.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 308 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 60/329 (18%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K++ ++ G+WKI YADF+T +MAFFL+MW++ +T + I +YF K Sbjct: 8 IVVKRINKHAGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKADLQGISEYFKTPLKV 67 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 M G + D + D+ T ++ Q +R E+ Sbjct: 68 AMQGGSGAG----------------ASDSVLKGGGNDM----TKKQGQIRRAEDI----- 102 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 D+ K DL K+ +E ++K ++ +K KR + Sbjct: 103 --------------DARKKPDL-------KTAQEE-------VAKAELEKLKELKRRIEE 134 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A S TL K +L + T G+ I I+D++N PMF S + P +L +I Sbjct: 135 AIDASETLR-----QFKKQLLLDITTEGLRIQIVDEQNRPMFASSKAELQPYARQILHEI 189 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G++L IS+ GHTDA+P+ + R NW LS DRA ++ + L+ G+ E+++ ++ Sbjct: 190 GQLLNDVPNKISLSGHTDAAPYPSGERYYSNWELSSDRANASRRELVSGGMKEEKLLRVV 249 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G + L +P+N NRRI I++ +++ Sbjct: 250 GLSSAVLFDKDNPLNPINRRISIIIMNKK 278 >gi|254194681|ref|ZP_04901112.1| chemotaxis protein MotB [Burkholderia pseudomallei S13] gi|169651431|gb|EDS84124.1| chemotaxis protein MotB [Burkholderia pseudomallei S13] Length = 340 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 51/333 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ L G+T + Sbjct: 65 PLKAAIFGSG---------DRSAD---DASIIKGGGRDISSLDAGTTRR----------- 101 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H + + SE L ++ + S+ + E L L + + A++ Sbjct: 102 -----TDGSAHLAERVAKKSED-DALAQA---QGSLERREQVRLHDLQVKLMAAIEANPT 152 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ ++I ++T G+ I I+D + PMF SS P + Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A + +DP++ NRRI I+V +R+ Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|53720918|ref|YP_109904.1| flagellar motor protein MotB [Burkholderia pseudomallei K96243] gi|167817882|ref|ZP_02449562.1| flagellar motor protein MotB [Burkholderia pseudomallei 91] gi|52211332|emb|CAH37321.1| chemotaxis protein MotB [Burkholderia pseudomallei K96243] Length = 340 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 51/333 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ L G+T + Sbjct: 65 PLKAAIFGSG---------DRSAD---DASIIKGGGRDISSLDAGTTRR----------- 101 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H + + SE L ++ + S+ + E L L + + A++ Sbjct: 102 -----TDGSTHLAERVAKKSED-DALAQA---QGSLERREQVRLHDLQVKLMAAIEANPT 152 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ ++I ++T G+ I I+D + PMF SS P + Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A + +DP++ NRRI I+V +R+ Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|146305660|ref|YP_001186125.1| flagellar motor protein MotB [Pseudomonas mendocina ymp] gi|145573861|gb|ABP83393.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 329 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 67/332 (20%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V + ++ G+WKI +ADF T +MAFFLVMW++++ + KKAI YF Sbjct: 2 ENNQPIIVKR-VKKNAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 Q+P + E + +++DL G + + L Sbjct: 61 -----------------QDP----------IGFTESASPHAIDL--GGSPTPAPDRTLNP 91 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 I +DL +S D++ ++ E+ +K+ + + Sbjct: 92 EI-----------------------QDLTESRDVDIDADQVESL------ADKLERERLE 122 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ+L K+ +LFE T+ G+ I I+D N PMF S+ P Sbjct: 123 LVLQELQNKVEENPE---LQRFKDQILFEITQDGLRIQIVDAENRPMFALGSANLQPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD---NWRLSLDRAYSAYQVLMKSGVSE 306 +L + + + ISI GHTDA PF + R NW LS +RA +A + L+ G ++ Sbjct: 180 DILLAMADTIRAVPNKISISGHTDAKPF--VGRGDFGNWELSANRANAARRALIAGGYAD 237 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++++++ G+A L +DP N NRRIDI+V Sbjct: 238 EQVARVVGYASSALFDRNDPFNPVNRRIDIVV 269 >gi|166713570|ref|ZP_02244777.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 385 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P M S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSMAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ ++S ++D ++ + L + +L+++I+K + L P + Sbjct: 109 KRDNA--------ADTTEDSRSKDKKRLETLMQ--ELKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L ++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|329890064|ref|ZP_08268407.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568] gi|328845365|gb|EGF94929.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/331 (27%), Positives = 145/331 (43%), Gaps = 50/331 (15%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ND+ I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF Sbjct: 4 NDRPILIKKVKKVAGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFA 63 Query: 71 PFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + T S GI + +S K +N +E Sbjct: 64 PANVSASTSGSGGILGGTS------------------LGDSEGAKGAGSNAV-----IEQ 100 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ Q ++L SE L I + E ++ AM+ Sbjct: 101 LAPEAPDAPQEAGQNSNLASASEAA--------LRAEIARREAADFASAAESLRQAMQSM 152 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L +L+K++ + + T G+ I ++DQ MF+ SS P P Sbjct: 153 PELAELSKQL----------------IIDQTPEGLRIQLVDQEGRSMFENGSSRPNPRAQ 196 Query: 250 VVLQKIGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++L+ + +V+ I+I GHT A R + +W LS RA ++ L +GVS D Sbjct: 197 LLLRAVAKVINQLPNRITITGHTSAVAGSSRASSPGDWPLSSARADASRLTLQSAGVSSD 256 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 R+ ++G A DP + NRRI I++ Sbjct: 257 RVYSVAGKAGSDPLYPDDPSLAGNRRIAIVL 287 >gi|76809964|ref|YP_331496.1| flagellar motor protein MotB [Burkholderia pseudomallei 1710b] gi|126438376|ref|YP_001060851.1| flagellar motor protein MotB [Burkholderia pseudomallei 668] gi|126452767|ref|YP_001068158.1| flagellar motor protein MotB [Burkholderia pseudomallei 1106a] gi|134281430|ref|ZP_01768138.1| chemotaxis protein MotB [Burkholderia pseudomallei 305] gi|167721693|ref|ZP_02404929.1| flagellar motor protein MotB [Burkholderia pseudomallei DM98] gi|167740671|ref|ZP_02413445.1| flagellar motor protein MotB [Burkholderia pseudomallei 14] gi|167826260|ref|ZP_02457731.1| flagellar motor protein MotB [Burkholderia pseudomallei 9] gi|167847768|ref|ZP_02473276.1| flagellar motor protein MotB [Burkholderia pseudomallei B7210] gi|167896356|ref|ZP_02483758.1| flagellar motor protein MotB [Burkholderia pseudomallei 7894] gi|167904730|ref|ZP_02491935.1| flagellar motor protein MotB [Burkholderia pseudomallei NCTC 13177] gi|167913010|ref|ZP_02500101.1| flagellar motor protein MotB [Burkholderia pseudomallei 112] gi|167920947|ref|ZP_02508038.1| flagellar motor protein MotB [Burkholderia pseudomallei BCC215] gi|217423951|ref|ZP_03455451.1| chemotaxis protein MotB [Burkholderia pseudomallei 576] gi|226193238|ref|ZP_03788848.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9] gi|237814248|ref|YP_002898699.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346] gi|242314580|ref|ZP_04813596.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b] gi|254183890|ref|ZP_04890481.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655] gi|254186366|ref|ZP_04892883.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237] gi|254261280|ref|ZP_04952334.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a] gi|254298791|ref|ZP_04966242.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e] gi|42766714|gb|AAS45440.1| MotB [Burkholderia pseudomallei] gi|76579417|gb|ABA48892.1| MotB [Burkholderia pseudomallei 1710b] gi|126217869|gb|ABN81375.1| chemotaxis protein MotB [Burkholderia pseudomallei 668] gi|126226409|gb|ABN89949.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106a] gi|134247097|gb|EBA47183.1| chemotaxis protein MotB [Burkholderia pseudomallei 305] gi|157808693|gb|EDO85863.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e] gi|157934051|gb|EDO89721.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237] gi|184214422|gb|EDU11465.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655] gi|217393014|gb|EEC33036.1| chemotaxis protein MotB [Burkholderia pseudomallei 576] gi|225934838|gb|EEH30815.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9] gi|237506677|gb|ACQ98995.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346] gi|242137819|gb|EES24221.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b] gi|254219969|gb|EET09353.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a] Length = 340 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 51/333 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ L G+T + Sbjct: 65 PLKAAIFGSG---------DRSAD---DASIIKGGGRDISSLDAGTTRR----------- 101 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H + + SE L ++ + S+ + E L L + + A++ Sbjct: 102 -----TDGSTHLAERVAKKSED-DALAQA---QGSLERREQVRLHDLQVKLMAAIEANPT 152 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ ++I ++T G+ I I+D + PMF SS P + Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A + +DP++ NRRI I+V +R+ Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|238025855|ref|YP_002910086.1| flagellar motor protein MotB [Burkholderia glumae BGR1] gi|124695899|gb|ABN14293.1| MotB [Burkholderia glumae BGR1] gi|124695929|gb|ABN14297.1| MotB [Burkholderia glumae BGR1] gi|237875049|gb|ACR27382.1| MotB [Burkholderia glumae BGR1] Length = 349 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 54/327 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW+++A K I YFN P Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L N S + I IT++ + RL Sbjct: 69 ALFG---------NGDRSSHDSSIIQGGGSDITRSDAGTTRRTDGTTMLASRL------- 112 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 ++KG+D TD P S+++ + RL D Sbjct: 113 ----------------AQKGRDDLHDTD--------------PGSQDR----AEQARLHD 138 Query: 195 LAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L K+ + + + V + + ++T +G+ I I+D + PMF +S++ P +L+ Sbjct: 139 LQIKLMAAIEANPVLRQFKQQIRIDSTLSGLRIEIVDTQKRPMFATASNMVEPYMRDILR 198 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ + ++ + Sbjct: 199 EIGKTLNEVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELISGGMDDAKVLR 258 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 ++G A + +DP + NRRI ILV Sbjct: 259 VTGLASTQNLNKADPFDPENRRISILV 285 >gi|326386939|ref|ZP_08208553.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] gi|326208619|gb|EGD59422.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] Length = 277 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 64/327 (19%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II KK+ + ++ G+WK+ YADF+T +MAFFL+MW++ AT + +K I YF P Sbjct: 13 IIVKKITVVAAGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTERQRKGIADYFTP---T 69 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 L+ +G + S L GS+ L + Y Sbjct: 70 LVKTRQG------------------------SAGSYGLLGGSS--------LTDADTYQF 97 Query: 136 NSQQSEHCKNSLTRDSEKG-KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + Q+ ++ RD+ G KD + +++ +E K+K+ A ++L+ Sbjct: 98 RAGQTGTKTLTIPRDATGGAKD--GGSKAKRTAALQERL------KQKLQA---SEQLRQ 146 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LAK++ T+ T GI + ++D N MF ++I P+ + +++ Sbjct: 147 LAKQVHLTM----------------TPDGIRLDLLDDANFSMFRLGTTILTPQAVELIRA 190 Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I + +A +++RGHTD+ ++ +NW LS RA + Q L++ GV E R +I Sbjct: 191 IAQSIAPDQNGLTVRGHTDSLQWKPGDPANNWSLSAGRAEATRQALLRFGVPEKRFRRIE 250 Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340 G A I +P + NRR+ IL+ D Sbjct: 251 GVADQEPLITDNPADPRNRRMSILLMD 277 >gi|58580310|ref|YP_199326.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578754|ref|YP_001915683.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424904|gb|AAW73941.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523206|gb|ACD61151.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 377 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P M S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSMAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ ++S ++D ++ + L + +L+++I+K + L P + Sbjct: 109 KRDN--------AADTTEDSRSKDKKRLETLMQ--ELKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L ++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|254473486|ref|ZP_05086883.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062] gi|211957602|gb|EEA92805.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062] Length = 573 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 3/149 (2%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K+L +A + + L GL ++ F +R G+LI I+D + MF SS P P+ + Sbjct: 423 KQLVSIANSVGAALDGLKTGASIE---FTHSRDGVLIRIMDNDDFGMFAVGSSEPHPDVV 479 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++KI +VL I IRGHTDA PF++ DNWRLS RA+ AY +L++ G+ E+RI Sbjct: 480 KAMEKIAKVLEEENGEIVIRGHTDARPFKSKRNDNWRLSTARAHMAYFMLVRGGLDENRI 539 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 I G+A RLK +P NRRI+I++ Sbjct: 540 VGIEGYADRRLKDVEEPYAPQNRRIEIML 568 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E + II++++ + T G WKI YADF T +MAFFL+MW++NA+D+ +++ I YF Sbjct: 4 EPQELIIVRRRNSDMITTPKSGVWKIAYADFATAMMAFFLLMWLVNASDEASQRGIASYF 63 Query: 70 NPFGKNLMTAS-KGIFD-EQNPPERSSQNKID 99 NP TAS KGI D E+ P S +D Sbjct: 64 NPIKLVDSTASPKGIRDPEETPSPTDSDEGVD 95 >gi|209515722|ref|ZP_03264585.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209503749|gb|EEA03742.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 336 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/339 (26%), Positives = 158/339 (46%), Gaps = 56/339 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ + ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 3 SKDKDRAIVVKR-ASPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 61 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P KI L + ++S LK G + Q Sbjct: 62 YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQG 97 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + +S ++EH + DS K L+ ++ ++E Sbjct: 98 VTRSTD--GSSSRAEHTASHNNDDSVK--------QLQGALERQEQV------------- 134 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 RL DL K+ + + + V + + ++T TG+ I I+D + PMF + + Sbjct: 135 ----RLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVE 190 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA P+ + NW LS DRA ++ + L+ G Sbjct: 191 PYMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGDKGYSNWELSADRANASRRELIAGG 250 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 251 MDEAKVMRVLGLASAQNLNKADPLDPENRRISIIVLNRK 289 >gi|212637803|ref|YP_002314328.1| MotB protein [Shewanella piezotolerans WP3] gi|212559287|gb|ACJ31741.1| MotB protein [Shewanella piezotolerans WP3] Length = 330 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 44/324 (13%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 I+I++K P + G+WK+ +ADF +MA F+V+WI+ D + I QY G Sbjct: 8 IVIRRKKRTKAKPGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLK--GD 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 T S FD P + ID +I L ST + + N+I Sbjct: 66 LYSTGSINPFDLSRSP-----SLIDF--QGNIAIQQAVLPATSTGVDRSGPAMHNHI--- 115 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 GKD K+ I E N +P + + +L+ Sbjct: 116 -----------------PLGKDNVKA-----GIGPELNSLVPG-------KFETQAQLEF 146 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LA++I ++ + + V+ + G+ I + D N MF + SS P +L Sbjct: 147 LAREIEQVITDVSMNANVE---LQVVPQGVRILMHDNINQFMFTRGSSNMKPYFEDLLMA 203 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +G +L +SI GHTD+SP+ NW LS RA A +VL SGV D++ +++G Sbjct: 204 LGPILGKVENKMSISGHTDSSPYAGKTFTNWELSSKRALLARRVLEYSGVQRDQVIQVTG 263 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A IA DP +ANRRI++LV Sbjct: 264 MADQAPYIADDPAAAANRRIEMLV 287 >gi|167838309|ref|ZP_02465168.1| flagellar motor protein MotB [Burkholderia thailandensis MSMB43] Length = 488 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 51/333 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V+ ++ G+WK+ YADFMT +MAFFL+MW+++A K I YFN Sbjct: 6 DQAIIVKR-VSQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ ++ G+T RL + Sbjct: 65 PLKAAIFGSG---------DRSAD---DSSIVKGGGRDISSVEAGAT-------RLTDGS 105 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 +L++ + ++L + + S+ + E L L + + A++ Sbjct: 106 THLADRVAKKSEDDALAQ-------------AQGSLERREQVRLHDLQVKLMAAIEANPT 152 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ ++I ++T G+ I I+D + PMF SS+ P + Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSNAVEPYMRDI 196 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A + +DP++ NRRI I+V +R+ Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|253996630|ref|YP_003048694.1| flagellar motor protein MotB [Methylotenera mobilis JLW8] gi|253983309|gb|ACT48167.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8] Length = 312 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 60/314 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-EQYFNPFGKNLMTASKGIFDEQNPP 90 +WKI YADF+T +MAFFL+MW++ +T K+ I E + P Sbjct: 25 AWKIAYADFVTAMMAFFLLMWLLGSTSKAQKEGISEYFKTPL------------------ 66 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 K+ L + + + +K G + Q + Q++ K Sbjct: 67 ------KVALMGGDSVGASDTLIKGGGGKDMTKKQGQVKPVDGPPGKQKAVDIK------ 114 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 D + ++ K E L L KEKI +K ++D S TLS Sbjct: 115 -----------DAKAALEKAEEQKLE-LLKEKI-----EKSIED-----SPTLS-----K 147 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 K +L + T G+ I I+D++N PMF+ + + P +L++IG++L T IS+ G Sbjct: 148 FKKQLLIDITTEGLRIQIVDEQNRPMFESAKAEMQPYAKQILKEIGQMLNGVTNKISLSG 207 Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTDA+P+ + + NW LS DRA ++ + L+ G+ E ++ ++ G + L DP+N Sbjct: 208 HTDAAPYSSGEKGYSNWELSSDRANASRRELIAGGMDEAKLLRVVGLSSVSLFDKDDPLN 267 Query: 329 SANRRIDILVEDRQ 342 NRRI I+V ++Q Sbjct: 268 PINRRISIIVMNKQ 281 >gi|90418368|ref|ZP_01226280.1| putative chemotaxis protein motB [Aurantimonas manganoxydans SI85-9A1] gi|90338040|gb|EAS51691.1| putative chemotaxis protein motB [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 75/116 (64%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ ISI D + MF+ S+ P P+ + ++++I VL+ +SIRGHTD+ PFR+ Sbjct: 293 GVTISIADDMMSGMFEVGSARPTPQVVAMMERIASVLSKQPGNVSIRGHTDSRPFRSAQY 352 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DNWRLS RA+ AY +L + G+ EDR+ I G A KIA DP +ANRRI+IL+ Sbjct: 353 DNWRLSTARAHMAYYMLARGGLDEDRVKAIEGVADRAPKIADDPEAAANRRIEILL 408 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G + + + II++++ + ++ G WKI +ADFMT +MAFFLVMW+ A+D T+K Sbjct: 6 GAGHLDRQEIIIVRRRGGHGEEAHHGGVWKIAFADFMTAMMAFFLVMWLTQASDMATRKQ 65 Query: 65 IEQYFNPFGKN-LMTASKGI 83 + QYFNP N A++G+ Sbjct: 66 VAQYFNPIRLNDASPATRGV 85 >gi|118589971|ref|ZP_01547375.1| flagellar motor protein MotB [Stappia aggregata IAM 12614] gi|118437468|gb|EAV44105.1| flagellar motor protein MotB [Stappia aggregata IAM 12614] Length = 500 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 16/157 (10%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 ++LA L++ A +I+ T G G LIS+ D +N MF S Sbjct: 355 EVLAQTEGTVLEETASQITVTREG----------------EGALISLTDDQNFGMFAIGS 398 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 + P PE + +L++IG+++A + I I+GHTDA PFR+ DNWRLS RA+ A +L + Sbjct: 399 AEPRPELVKLLERIGKIVADTPGQIVIKGHTDARPFRSKTYDNWRLSSARAHMALYMLSR 458 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 GV +DR +++ G+A LK+ SDP ++NRRI+I + Sbjct: 459 GGVGKDRFNRVEGYADKDLKVPSDPFAASNRRIEIYL 495 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 44/60 (73%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 ++ +I+++K + +D G WKI YADFMT LMAFFLVMW+IN TDD ++ + QYFNP Sbjct: 7 NEIVIVRRKNSWEDDQTPHGVWKIAYADFMTALMAFFLVMWLINVTDDSVRRGVAQYFNP 66 >gi|84622281|ref|YP_449653.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366221|dbj|BAE67379.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 385 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P M S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSMAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ ++S ++D ++ + L + +L+++I+K + L P + Sbjct: 109 KRDNA--------ADTTEDSRSKDKKRLETLMQ--ELKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L ++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVEILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|167620832|ref|ZP_02389463.1| flagellar motor protein MotB [Burkholderia thailandensis Bt4] Length = 348 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 51/333 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ + G+T RL + Sbjct: 65 PLKAAIFGSG---------DRSAD---DSSIIKGGGRDISSVDAGTT-------RLTDG- 104 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S H + + SE L ++ + S+ + E L L + + A++ Sbjct: 105 --------STHLAERVAKKSEDDA-LAQA---QGSLERREQIRLHDLQVKLMAAIEANPT 152 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ ++I ++T G+ I I+D + PMF SS P + Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A + +DP++ NRRI I+V +R+ Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|83721243|ref|YP_443678.1| flagellar motor protein MotB [Burkholderia thailandensis E264] gi|167582718|ref|ZP_02375592.1| flagellar motor protein MotB [Burkholderia thailandensis TXDOH] gi|83655068|gb|ABC39131.1| chemotaxis protein MotB [Burkholderia thailandensis E264] Length = 344 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 51/333 (15%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN Sbjct: 6 DQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNT 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K + S +RS+ D SI + ++ + G+T RL + Sbjct: 65 PLKAAIFGSG---------DRSAD---DSSIIKGGGRDISSVDAGTT-------RLTDG- 104 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S H + + SE L ++ + S+ + E L L + + A++ Sbjct: 105 --------STHLAERVAKKSEDDA-LAQA---QGSLERREQIRLHDLQVKLMAAIEANPT 152 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ ++I ++T G+ I I+D + PMF SS P + Sbjct: 153 LRQFKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDI 196 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ G+ E ++ Sbjct: 197 LREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKV 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A + +DP++ NRRI I+V +R+ Sbjct: 257 LRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|110632645|ref|YP_672853.1| flagellar motor protein MotB [Mesorhizobium sp. BNC1] gi|110283629|gb|ABG61688.1| OmpA/MotB [Chelativorans sp. BNC1] Length = 452 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 79/134 (58%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 L + + V G+LIS+ D MF S++P + ++KIG+ LA Sbjct: 316 LNGEGLASSVTVSAGEEGVLISVTDDIRNGMFPVGSAVPERALVGAMEKIGKTLAGQPGT 375 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I I GHTDA PFR+ DNWRLS RA++A +L++ G+ E RI++++GFA +LK Sbjct: 376 IRIHGHTDARPFRSDTYDNWRLSTARAHAAQYMLIRGGLDETRITEVAGFADRKLKEPES 435 Query: 326 PMNSANRRIDILVE 339 P+ ANRRI+IL+E Sbjct: 436 PLADANRRIEILLE 449 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 46/65 (70%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 +++ + II+++ +D+ ++ G WKI +ADFMT +M FFLVMW+INA ++ T+ A+ Sbjct: 6 EDERQPEIIIVRRGGDDEDSEHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTRAALA 65 Query: 67 QYFNP 71 YFNP Sbjct: 66 SYFNP 70 >gi|295678083|ref|YP_003606607.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295437926|gb|ADG17096.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 336 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 154/335 (45%), Gaps = 56/335 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 3 SKDKDRAIVVKRS-APRKHGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 61 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P KI L + ++S LK G + Q Sbjct: 62 YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQG 97 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S S + + +R++E D K + E L Sbjct: 98 VTR-----STDGSSNRAERTASRNNE---------DSVKQLQGE-------------LER 130 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + + V + + ++T TG+ I I+D + PMF + + Sbjct: 131 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVE 190 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA P+ + NW LS DRA ++ + L+ G Sbjct: 191 PYMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELVAGG 250 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E ++ ++ G A + +DP++ NRRI I+V Sbjct: 251 MDEAKVMRVLGLASTQNLNKADPLDPENRRISIIV 285 >gi|197105150|ref|YP_002130527.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1] gi|196478570|gb|ACG78098.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1] Length = 301 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 146/329 (44%), Gaps = 45/329 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 DQ I+IKK ++ G+WK+ YADF+T +MAFFL+MW+IN T + K+ I YF Sbjct: 4 GDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPEQKQGIADYFA 63 Query: 71 PFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + + GI S++ I E + +S + G + LE Sbjct: 64 PASVSQTSSGAGGILGGTALGTDGSKSAGASPIIEELAPDSRNPNDGKNRDASKSDSLE- 122 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + ++ +++L + +EE F A + Sbjct: 123 -------AASTQALRDALQK-------------------REEAAF-------ASAAQSLR 149 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + LQD+ + + K ++ + T G+ I ++DQ MF+ SS P Sbjct: 150 QSLQDMPELA----------ELSKNIIIDQTPEGLRIQLVDQEGRSMFNAGSSQPNDRAK 199 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++L+ + +V+ +SI GHT A+ + A +W LS RA ++ ++L SGV DR+ Sbjct: 200 LLLRAVSKVINQLPNRVSIYGHTSANANGSRAESDWPLSAARADASRRILQGSGVDPDRV 259 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++SG A DP + NRRI I++ Sbjct: 260 YQVSGKAASEPLYPDDPTLAGNRRIAIVL 288 >gi|161523343|ref|YP_001578355.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616] gi|189351884|ref|YP_001947512.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616] gi|160340772|gb|ABX13858.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189335906|dbj|BAG44976.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616] Length = 338 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLRA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 +Q +E K D ++ ++ + E L L + + A++ L+ Sbjct: 106 --TQLAERVA--------KPADDTAQARMQGALERREQVRLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|254250906|ref|ZP_04944224.1| Flagellar motor protein [Burkholderia dolosa AUO158] gi|124893515|gb|EAY67395.1| Flagellar motor protein [Burkholderia dolosa AUO158] Length = 339 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/331 (25%), Positives = 149/331 (45%), Gaps = 54/331 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI + ++ + G+ + L + + Sbjct: 69 ALFGSG----------DRSSQ---DSSIIDGGGRDLSSVDAGTLRRTDGTTNLADRVAKK 115 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 ++ + +L R + + RL D Sbjct: 116 NDEDAQAQAQGALER-------------------------------------REQARLHD 138 Query: 195 LAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L K+ + + + + + ++T G+ I I+D + PMF SS P +L+ Sbjct: 139 LQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILR 198 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ + Sbjct: 199 EIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLR 258 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + +DP++ NRRI ++V +R+ Sbjct: 259 VLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|170694367|ref|ZP_02885521.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170140790|gb|EDT08964.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 335 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 56/339 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P KI L + ++S LK G + Q Sbjct: 61 YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQ- 95 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +TR ++ + E++++K + L E L Sbjct: 96 -------------------GVTRSTDGSNNRA-----ERTVSKSSEDSMKQLQGE--LER 129 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + + V + + ++T TG+ I I+D + PMF + Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVE 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA+ + + NW LS DRA ++ + L+ G Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + E ++ ++ G A + +DPM+ NRRI ++V +R+ Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISVIVLNRK 288 >gi|163793054|ref|ZP_02187030.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159181700|gb|EDP66212.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 373 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 37/312 (11%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL++W++NAT ++ K I YF+P + T S Sbjct: 24 AWKVAYADFVTAMMAFFLLLWLLNATTEEQKMGISNYFDPTAISRSTRSG---------S 74 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 +++ + S +I ST Q + Q +R E S S+ +N +R Sbjct: 75 GGLLGGTSITVPGALKTPSSPPQI-STPQVARPQAERTE------SLDPDSDDPENIESR 127 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL--SGLV 207 L D E ++N+E E+++ + +++ +D I + S + Sbjct: 128 -------LGSREDEEGTVNQE--------VVEQLMREREQQQFEDAEAAIKEAIEKSPEL 172 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 +D + + + ++T G+ I +IDQ +F S+ +T +L K+ EV+A I Sbjct: 173 SD-VAESIKVDSTPEGLRIQLIDQERIALFPNGSASMYEQTRKLLIKVAEVVAALPNKIE 231 Query: 268 IRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTD+ F NW LS DRA ++ +V++ +G+ E RI ++ G A + DP Sbjct: 232 ITGHTDSKQFHPGSTYTNWDLSSDRANASRRVMVANGIDEKRIDEVVGKADRDPLVVEDP 291 Query: 327 MNSANRRIDILV 338 + NRRI I++ Sbjct: 292 SDPTNRRISIIL 303 >gi|289665512|ref|ZP_06487093.1| flagellar motor protein MotB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668313|ref|ZP_06489388.1| flagellar motor protein MotB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 385 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 158/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ ++S ++D ++ + L + DL+++I+K + L P + Sbjct: 109 KRDN--------AADTTEDSRSKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKIDPQNPINRRISIVV 276 >gi|148359858|ref|YP_001251065.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby] gi|296107908|ref|YP_003619609.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy] gi|148281631|gb|ABQ55719.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby] gi|295649810|gb|ADG25657.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 152/331 (45%), Gaps = 61/331 (18%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N + I +K+ +D ++ GSWKI YADF+T +MAFFL+MW++ + + K I +YF Sbjct: 27 NTHYTPIIRKIKKNDHKHHGGSWKIAYADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF- 85 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K M K+ L E + +K G N +E+ Sbjct: 86 ---KQPM-------------------KMALFGGESMGNRKATIKGGGPN-------IED- 115 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 ++ Q S K + K K++ +S E I K E L E L+M++ Sbjct: 116 ----TDGQVSATNKPLINESIAKDKEIVESQANE--IKKLEE-----LKSEINLSMEKDP 164 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L L K++ L + G+ I +ID + PMFD S PE Sbjct: 165 SLAGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L I ++L I+I+GHTDA+P+ N + NW LS RA +A + L+K+G+ E+ Sbjct: 209 ILANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDEN 268 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ ++G++ L +P N NRRI I+V Sbjct: 269 KVMTVTGYSSTVLLDKKNPYNPENRRISIIV 299 >gi|221214225|ref|ZP_03587197.1| flagellar motor protein [Burkholderia multivorans CGD1] gi|221165880|gb|EED98354.1| flagellar motor protein [Burkholderia multivorans CGD1] Length = 338 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLRA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 +Q +E K D ++ ++ + E L L + + A++ L+ Sbjct: 106 --TQLAERVA--------KPADDTAQARMQGALERREQVRLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|192359644|ref|YP_001981667.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107] gi|190685809|gb|ACE83487.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107] Length = 333 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 60/329 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q +IIKK+ ++ SWK+ ADFMT +MAFFL+MW++ T ++ KKAI QYF Sbjct: 6 QPLIIKKRKGRGHG-HHGSSWKVALADFMTAMMAFFLLMWLLGGTTEEEKKAISQYFQDP 64 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 G + I + DL + + ++ Q + E + Sbjct: 65 GSQYV----------------------------IGEGGADLGLINQDRPIQQSQAEQDTM 96 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 +N+Q+ +T D +++ + + EN ++L Sbjct: 97 ETANTQEFTQDDQEVTEDK-----------IKREMERIEN-----------------EQL 128 Query: 193 QDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 Q+L +++ + ++ L V I +L + T G+ I I+D+ PMFD S+ + Sbjct: 129 QELKEQLETEINQLDSVFQQIKDQILIDFTALGLRIQIVDKDQRPMFDVGSANLKTYSKE 188 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VLQ + +L ISI GHTDA+P+ N NW LS DRA +A + +++ E+++ Sbjct: 189 VLQALAPILDKVPNKISITGHTDATPYGANATYTNWELSADRANAARRAMLEGSYPENKV 248 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 + + G + P+ NRRI I+V Sbjct: 249 ATVQGMGSVAPLLVDKPLEPINRRIAIIV 277 >gi|78064833|ref|YP_367602.1| flagellar motor protein MotB [Burkholderia sp. 383] gi|77965578|gb|ABB06958.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 338 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPSKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQMKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S +RSSQ D SI ++ + G+ + +L + + Sbjct: 69 ALFGSG---------DRSSQ---DSSIINGGGRDLSSVDAGTLRRTDGTTQLAERLAKVG 116 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + EH +R E+G ++ E L L + + A++ L+ Sbjct: 117 D----EH-----SRSQEQGAQ-----------DRLEQARLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDNVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYSGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|172059245|ref|YP_001806897.1| flagellar motor protein MotB [Burkholderia ambifaria MC40-6] gi|171991762|gb|ACB62681.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 339 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG---------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT----- 105 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + ++ E L L + + A++ L+ Sbjct: 106 ---------TSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++S NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDSENRRISVIVLNRK 289 >gi|30248076|ref|NP_840146.1| flagellar motor protein MotB [Nitrosomonas europaea ATCC 19718] gi|30179961|emb|CAD83956.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718] Length = 307 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 62/315 (19%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WKI YADF+T +MAFFL+MW++ +T K+ I +YF K + G D + Sbjct: 25 GAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGIAEYFKTPLKVALLGGDGSGDSTSV- 83 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 +K G + K+ +++ + F Sbjct: 84 ----------------------VKGGGDDISKKIGQMKRSDF------------------ 103 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 DL +S D++ ++ + L L K L +I T++ A N Sbjct: 104 ----DDLKRSIDMDALQALQDRFELEQLEK--------------LKARIEDTINSNPALN 145 Query: 211 IVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 K +L + T G+ I I+D++N PMF + T ++L +IG++L IS+ Sbjct: 146 KFKSQLLLDITSEGLRIQIVDEKNRPMFSMGRAELQSYTKMILHEIGKMLNDVGNKISLS 205 Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTDA+P+ + NW LS DRA ++ + L+ G+S +++ ++ G + + +DP Sbjct: 206 GHTDATPYPTGEKSYSNWELSADRANASRRELIAGGMSPEKMLRVVGLSSAVMFDKADPF 265 Query: 328 NSANRRIDILVEDRQ 342 + NRRI I+V +++ Sbjct: 266 SPFNRRISIIVMNKK 280 >gi|221202105|ref|ZP_03575140.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221209087|ref|ZP_03582082.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221171082|gb|EEE03534.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221177899|gb|EEE10311.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 338 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLRA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 +Q +E K D ++ ++ + E L L + + A++ L+ Sbjct: 106 --TQLAERVA--------KPTDDTAQARMQGALERREQVRLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|187925787|ref|YP_001897429.1| flagellar motor protein MotB [Burkholderia phytofirmans PsJN] gi|187716981|gb|ACD18205.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 335 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/339 (26%), Positives = 154/339 (45%), Gaps = 56/339 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P KI L + ++S LK G + Q Sbjct: 61 YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQG 96 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + ++ SE N + G S D K + E L Sbjct: 97 V---------TRSSEGSNNRAEHSAAHG-----SEDSIKQLQGE-------------LER 129 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + + V + + ++T TG+ I I+D + PMF + Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA+ + + NW LS DRA ++ + L+ G Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIGGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + E ++ ++ G A + +DPM+ NRRI I+V +R+ Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288 >gi|54298209|ref|YP_124578.1| flagellar motor protein MotB [Legionella pneumophila str. Paris] gi|53751994|emb|CAH13420.1| hypothetical protein lpp2267 [Legionella pneumophila str. Paris] Length = 312 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 61/329 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q+ I +K+ +D ++ GSWKI +ADF+T +MAFFL+MW++ + + K I +YF Sbjct: 29 QYTPIIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF--- 85 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 K M K+ L E + +K G N +E+ Sbjct: 86 -KQPM-------------------KVALFGGESMGNRKATIKGGGPN-------IED--- 115 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 ++ Q S K + K K++ +S E I K E L E L+M++ L Sbjct: 116 --TDGQVSATNKPLINESIAKDKEIIESQANE--IKKLEE-----LKSEINLSMEKDPSL 166 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L K++ L + G+ I +ID + PMFD S PE +L Sbjct: 167 AGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPIL 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 I ++L I+I+GHTDA+P+ N + NW LS RA +A + L+K+G+ E+++ Sbjct: 211 ANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKV 270 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++G++ L +P N NRRI I+V Sbjct: 271 MTVTGYSSTVLLDKKNPYNPENRRISIIV 299 >gi|154253326|ref|YP_001414150.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157276|gb|ABS64493.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 63/336 (18%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N Q II+KK + ++ G+WKI YADF+T +MAFFL+MW+I+ T + K+ + YF Sbjct: 5 NQQPIILKKVKKVVHG-HHGGAWKIAYADFVTAMMAFFLLMWLISMTTPEQKQGLADYFA 63 Query: 71 PFGKNLMTASKG------IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 P + T+ G FDE+ ++ ++ ++I Sbjct: 64 PSNVSRSTSGAGGIMGGTAFDEEGARMPGTKPQVVMTIS--------------------- 102 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + +Q + + L K EKS E N+ + E I Sbjct: 103 ----------TPAQPKSPETAEEKAAAAQVDKLLK----EKSARDERNFR---SAAESIR 145 Query: 185 -AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 AM+ L +L++ + + + T G+ I I+DQ MF ++ Sbjct: 146 QAMRENPDLAELSRNV----------------IIDETPEGLRIQIVDQDGRSMFPSGNAE 189 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS 302 P T +++++ +L +SI GHTDA+P NW L+ DRA + ++L + Sbjct: 190 PYERTRQLIEEVSNILIKLPNRVSISGHTDANPVEGRPGYSNWELTADRANATRRILAGA 249 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 G+S DRI ++ G A DP +ANRR+ I++ Sbjct: 250 GLSNDRIYQVIGKADSEPLFPEDPYMAANRRLSIVL 285 >gi|302383636|ref|YP_003819459.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302194264|gb|ADL01836.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 139/313 (44%), Gaps = 56/313 (17%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT-ASKGIFDEQNPP 90 +WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF P + T S GI Sbjct: 23 AWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFAPASVSQTTSGSGGILG----- 77 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 S+ E +K+S + + LE QQ+ D Sbjct: 78 --------GTSLGEDGSKSSGSMSV-----------LE---------QQAPEAPEDAPED 109 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL--AMKRKKRLQDLAKKISSTLSGLVA 208 +L +++ E S + L AM+R L +L+K++ Sbjct: 110 VGTNANLAAASEEELRQEIAAREAAEFASAAESLRQAMQRMPELAELSKQL--------- 160 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + + T G+ I ++DQ MFD++S+ P V+L+ I V+ ISI Sbjct: 161 -------IIDQTPEGLRIQLVDQEGRSMFDQNSARPNARAQVLLRAIAGVVNRLPNRISI 213 Query: 269 RGHTDA---SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 GHT A S ++A D W LS +RA ++ +L +GV DR+ ++G A D Sbjct: 214 SGHTSAVAGSGRASVATD-WPLSANRADASRAILQAAGVDADRVYSVAGKAGSDPLYPDD 272 Query: 326 PMNSANRRIDILV 338 P + NRRI I++ Sbjct: 273 PSLAGNRRIAIVL 285 >gi|91785660|ref|YP_560866.1| flagellar motor protein MotB [Burkholderia xenovorans LB400] gi|91689614|gb|ABE32814.1| outer membrane porin, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 335 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 56/335 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 NKDKDRAIVVKR-AAPKKASHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P KI L + ++S LK G + Q Sbjct: 61 YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDAQ- 95 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +TR ++ + E+S++ + L E L Sbjct: 96 -------------------GVTRSTDGSNNRS-----ERSVSHNNEDSVKQLQGE--LER 129 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + + V + + ++T TG+ I I+D + PMF + Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA+ + + NW LS DRA ++ + L+ G Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E ++ ++ G A + +DPM+ NRRI I+V Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIV 284 >gi|144899852|emb|CAM76716.1| Flagellar motor protein [Magnetospirillum gryphiswaldense MSR-1] Length = 323 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 144/329 (43%), Gaps = 49/329 (14%) Query: 13 QFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q IIIK KKVA ++ G+WK+ YADF+T +MAFFL++W++NA ++ I YF Sbjct: 5 QQIIIKRVKKVAAG---HHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGISNYFA 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P ASK IG Q Q + Sbjct: 62 P-----SMASK--------------------SASGAGGLLGGQVIGQGAQVSQTSS-PSL 95 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +L S ++ + ++E + + + EK +E+ F K K + K Sbjct: 96 VQHLPPSSIGPGGEDMTSENTEPMEGMSEEDFREKMAEREQQKF----DKAKEVLDNALK 151 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + +L K+ ++ + DN +G+ + T DQ MF SS T Sbjct: 152 GIPEL-KQFEGSM---MVDNTPEGLRIQIT---------DQEGLAMFPSGSSAMFGHTRA 198 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + ++ ISI GHTDA PFR+ NW LS DRA ++ + L+ SGV E+RI Sbjct: 199 LLDLVSRIVNQMPNKISITGHTDAIPFRDPSGYTNWELSADRALASRRALLGSGVPEERI 258 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 +I G A + DP NRRI I++ Sbjct: 259 DRIVGRASSEPLVVDDPKAPRNRRISIIL 287 >gi|307731388|ref|YP_003908612.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307585923|gb|ADN59321.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 335 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 154/339 (45%), Gaps = 56/339 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A + ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P L + D D+S D S D GS+N R Sbjct: 61 YFNQPLKITLWGGDRSAEDSSI----LKGGGRDISTDAQGVTRSTD---GSSN------R 107 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 E + + SN + + L R +E++ Sbjct: 108 AERTVSH-SNEDSMKQLQGELER------------------------------REQV--- 133 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 RL DL K+ + + + V + + ++T TG+ I I+D + PMF + Sbjct: 134 ----RLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA + + NW LS DRA ++ + L+ G Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPLDPENRRISIIVLNRK 288 >gi|115350223|ref|YP_772062.1| flagellar motor protein MotB [Burkholderia ambifaria AMMD] gi|115280211|gb|ABI85728.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 339 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 SL K D + + ++ E L L + + A++ L+ Sbjct: 106 ----------TSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDESKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|170703865|ref|ZP_02894555.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170131226|gb|EDS99863.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 339 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 150/330 (45%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 SL K D + + + ++ E L L + + A++ L+ Sbjct: 106 ----------TSLADRVAKAGDQNSRSQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|171322726|ref|ZP_02911473.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171091928|gb|EDT37395.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 339 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG---------DRSSQ---DSSI---INGGGRDL---SSADAGTLRRTDGT----- 105 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + + ++ E L L + + A++ L+ Sbjct: 106 ---------TSLADRVAKAGDQNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|188579878|ref|YP_001923323.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179343376|gb|ACB78788.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 470 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 13/174 (7%) Query: 178 LSKEKILAMKRKKRLQDLAKKISST--LSGLVAD---------NIVKGVLFETTRTG--I 224 L+K ++ A+K D K + T LS L A+ N E RTG + Sbjct: 292 LAKAEVPAVKEPAAGADQPAKAAETAALSALKAEIARAVPSLPNSAPAPHLEVRRTGEGV 351 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN 284 LISI D+ N MF S+ P P+ + L++I ++L I +RGHTD PFR+ DN Sbjct: 352 LISITDEINFSMFGIGSAEPTPKVVKALERIAKILNSRPGRIVVRGHTDGRPFRSETYDN 411 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 WRLS RA A +L++ G+ E RI +I G+A + +IA+DP + NRRI+IL+ Sbjct: 412 WRLSSARAQMASYMLVRGGLDEARIERIEGYADRQPRIAADPKAAENRRIEILL 465 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + IIIK+ +D ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YFNP Sbjct: 7 EIIIIKRHGDHEDG-HHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPV 65 Query: 73 GKNLMTA-SKGIFDEQ---NPPERSSQNKID 99 +T KG+ D Q N P S + K D Sbjct: 66 KLAEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96 >gi|103488396|ref|YP_617957.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] gi|98978473|gb|ABF54624.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] Length = 287 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 142/334 (42%), Gaps = 69/334 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-- 72 II+KK + ++ G+WK+ YADF+T +MAFFL+MW++ AT++ +KA+ YF P Sbjct: 12 IIVKKVIEAGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATNEKQRKALADYFAPTIV 71 Query: 73 -GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K S G+F + +S+D+ Sbjct: 72 QSKQDTAGSNGLFGGDS----------LVSVDK--------------------------- 94 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 Y + Q+ ++ RD+ G ++ E F +LA K R Sbjct: 95 -YPHGAAQTGTRAMTIPRDAVGGPREASG----RAREAESKRF-------SLLAQSMKDR 142 Query: 192 LQ---DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +Q DL + + + + F T G+ I I+D + MF +S P Sbjct: 143 IQSKGDLRR-------------LARNLHFTETMEGLRIDIVDDADFSMFALGTSQLTPAG 189 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + ++ +A + + IRGHTDA+P+ +NWRLS+DRA L GV+ D Sbjct: 190 AKLFAEVAVPIAEAPNQLMIRGHTDAAPWSAKSGTNNWRLSVDRAEVTRHYLEFRGVASD 249 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 R ++I G A I SD + NRRI I + R Sbjct: 250 RFARIEGVADREPYIPSDRFDPRNRRISITLGWR 283 >gi|328545495|ref|YP_004305604.1| flagellar motor protein MotB [polymorphum gilvum SL003B-26A1] gi|326415236|gb|ADZ72299.1| Flagellar motor protein MotB [Polymorphum gilvum SL003B-26A1] Length = 434 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K LQ + ++ T G A I E T G+LIS+ D ++ MF S+ P P Sbjct: 282 KTAAALQADLQGLAETPLGAAASRIT----VERTGAGLLISLTDDQDFGMFAVGSAEPRP 337 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E + ++++IG L+ I IRGHTDA PFR+ DNWRLS RA+ A +L + GV Sbjct: 338 ELVRLMERIGSTLSARPGRIVIRGHTDARPFRSKTYDNWRLSSARAHMALYMLARGGVDA 397 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 R+ +I G+A LK SDP ++ NRRI+I + Sbjct: 398 GRVERIEGYADRDLKRPSDPYSAVNRRIEIFL 429 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + + +I++++ A D + G WKI +ADFMT +MAFFLVMW+IN TD++ ++ + QYFN Sbjct: 7 SGEIVIVRRRPAWDADHHKGGVWKIAFADFMTAMMAFFLVMWLINVTDENVRQGVAQYFN 66 Query: 71 P 71 P Sbjct: 67 P 67 >gi|323527738|ref|YP_004229891.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323384740|gb|ADX56831.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 335 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 91/339 (26%), Positives = 154/339 (45%), Gaps = 56/339 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A + ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASSAQLKGIAD 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P KI L + ++S LK G + Q Sbjct: 61 YFNQPL------------------------KITLWGGDRSAEDSSILKGGGRDISTDSQG 96 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + ++ S+ N R G S D K + E L Sbjct: 97 V---------TRTSDGSINRSDRTVAHG-----SEDAMKQLQGE-------------LER 129 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + + V + + ++T TG+ I I+D + PMF + Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVE 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA + + NW LS DRA ++ + L+ G Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + E ++ ++ G A + +DPM+ NRRI I+V +R+ Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288 >gi|52842529|ref|YP_096328.1| flagellar motor protein MotB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629640|gb|AAU28381.1| chemotaxis (motility protein B) transmembrane [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 312 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 94/329 (28%), Positives = 151/329 (45%), Gaps = 61/329 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + I +K+ +D ++ GSWKI +ADF+T +MAFFL+MW++ + + K I +YF Sbjct: 29 HYTPIIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF--- 85 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 K M K+ L E + +K G N +E+ Sbjct: 86 -KQPM-------------------KVALFGGESMGNRKATIKGGGPN-------IED--- 115 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 ++ Q S K + K K++ +S E I K E L E L+M++ L Sbjct: 116 --TDGQVSATNKPLINESIAKDKEIVESQANE--IKKLEE-----LKSEINLSMEKDPSL 166 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L K++ L + G+ I +ID + PMFD S PE +L Sbjct: 167 AGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPIL 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 I ++L I+I+GHTDA+P+ N + NW LS RA +A + L+K+G+ E+++ Sbjct: 211 ANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKV 270 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++G++ L +P N NRRI I+V Sbjct: 271 MTVTGYSSTILLDKKNPYNPENRRISIIV 299 >gi|296157481|ref|ZP_06840316.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295892253|gb|EFG72036.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 335 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 56/335 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P L + D D+S D S D GS N+ Sbjct: 61 YFNQPLKVTLWGGDRSAEDS----SILKGGGRDISTDAQGVTRSTD---GSNNRS----- 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 E+S++ + L E L Sbjct: 109 -------------------------------------ERSVSHNNEDSMKQLQGE--LER 129 Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + + V + + ++T TG+ I I+D + PMF + Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVE 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L++IG L I ++GHTDA+ + + NW LS DRA ++ + L+ G Sbjct: 190 PYMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E ++ ++ G A + +DPM+ NRRI I+V Sbjct: 250 MDEAKVMRVLGLASTQNLNKADPMDPENRRISIIV 284 >gi|206558533|ref|YP_002229293.1| flagellar motor protein MotB [Burkholderia cenocepacia J2315] gi|198034570|emb|CAR50435.1| chemotaxis protein MotB [Burkholderia cenocepacia J2315] Length = 339 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNMPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 ++ + +RSSQ D SI I DL S+ +R + Sbjct: 69 AILGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 SL K D + + + ++ E L L + + A++ L+ Sbjct: 106 ----------TSLAERLAKAGDENSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDTQKRPMFAMSSDRVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|325923665|ref|ZP_08185290.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] gi|325545864|gb|EGD17093.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] Length = 404 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E ++I++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVVIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ ++S +D ++ + L + DL+++I+K + L P + Sbjct: 109 KRDN--------AADTTEDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G++ Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMA 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L ++P N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276 >gi|254246760|ref|ZP_04940081.1| Flagellar motor protein [Burkholderia cenocepacia PC184] gi|124871536|gb|EAY63252.1| Flagellar motor protein [Burkholderia cenocepacia PC184] Length = 339 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN P Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNMPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 ++ + +RSSQ D SI I DL S+ +R + Sbjct: 69 AILGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 SL K D + + + ++ E L L + + A++ L+ Sbjct: 106 ----------TSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 260 LGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|296447981|ref|ZP_06889887.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] gi|296254491|gb|EFH01612.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] Length = 381 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%) Query: 210 NIVKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 N G E T T G+LIS+ D N MF S P P+ + ++ +I VLA + Sbjct: 246 NAQPGPHVEVTETAEGLLISLTDDANFSMFAIGSVKPKPQLVRIVGQIAGVLAKQPGEVE 305 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 +RGHTDA +++ DNWRLS DRA AY +L++ G++E R+ KI+G+A LK +P+ Sbjct: 306 LRGHTDARSYKSKVYDNWRLSADRANMAYYMLLRGGLAEKRVVKIAGYADRNLKAQKEPL 365 Query: 328 NSANRRIDILV 338 + NRRI+ILV Sbjct: 366 AAVNRRIEILV 376 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 5/96 (5%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + I I+K + ++ G+WKI +ADFMT +MAFFLVMWIIN+T +TK AI QYFNP Sbjct: 8 EIIFIRKNHGDHEEGHHGGAWKIAFADFMTAMMAFFLVMWIINSTSKETKAAIVQYFNPV 67 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEH 105 L+ A KG+ D ++ + S+ + EH Sbjct: 68 --QLVDSNPAHKGLRDPKDGGQGKSEKPTAATQKEH 101 >gi|54295159|ref|YP_127574.1| flagellar motor protein MotB [Legionella pneumophila str. Lens] gi|53754991|emb|CAH16479.1| hypothetical protein lpl2239 [Legionella pneumophila str. Lens] Length = 312 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 94/329 (28%), Positives = 150/329 (45%), Gaps = 61/329 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + I +K+ +D + GSWKI +ADF+T +MAFFL+MW++ + + K I +YF Sbjct: 29 HYTPIIRKIKKNDHKYHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYF--- 85 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 K M K+ L E + +K G N +E+ Sbjct: 86 -KRPM-------------------KVALFGGESMGNRKATIKGGGPN-------IED--- 115 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 ++ Q S K + K K++ +S E I K E L E L+M++ L Sbjct: 116 --TDGQVSATNKPLINESIAKDKEIIESQANE--IKKLEE-----LKSEINLSMEKDPSL 166 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L K++ L + G+ I +ID + PMFD S PE +L Sbjct: 167 AGLKKQL----------------LMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPIL 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 I ++L I+I+GHTDA+P+ N + NW LS RA +A + L+K+G+ E+++ Sbjct: 211 ANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKV 270 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++G++ L +P N NRRI I+V Sbjct: 271 MTVTGYSSTVLLDKKNPYNPENRRISIIV 299 >gi|21244419|ref|NP_644001.1| flagellar motor protein MotB [Xanthomonas axonopodis pv. citri str. 306] gi|21110081|gb|AAM38537.1| chemotaxis MotB protein [Xanthomonas axonopodis pv. citri str. 306] Length = 380 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D ++ + L + DL+++I+K + L P + Sbjct: 109 KRDNA--------ADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|78049371|ref|YP_365546.1| flagellar motor protein MotB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926421|ref|ZP_08187746.1| flagellar motor protein [Xanthomonas perforans 91-118] gi|78037801|emb|CAJ25546.1| flagellar motor protein MotB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543210|gb|EGD14648.1| flagellar motor protein [Xanthomonas perforans 91-118] Length = 385 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D + + L + DL+++I+K + L P + Sbjct: 109 KRDN--------AADTDVDSRAKDKRRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|294624638|ref|ZP_06703310.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601073|gb|EFF45138.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 383 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D ++ + L + DL+++I+K + L P + Sbjct: 109 KRDNA--------ADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|294667303|ref|ZP_06732523.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602975|gb|EFF46406.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 387 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D ++ + L + DL ++I+K + L P + Sbjct: 109 KRDNA--------ADTDVDSRAKDKKRLEALMQ--DLREAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G+S Sbjct: 184 YTVAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMS 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L +DP N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTDPQNPINRRISIVV 276 >gi|27381973|ref|NP_773502.1| flagellar motor protein MotB [Bradyrhizobium japonicum USDA 110] gi|27355143|dbj|BAC52127.1| motB [Bradyrhizobium japonicum USDA 110] Length = 445 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 1/167 (0%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 P S+ + A ++ ++ L I+ LS + A G+L+S+ D + Sbjct: 279 PKDSEPRDAAQTQQPTVKQLQSAIAEALSDIKA-GAGPAAEVRQVEEGLLVSLTDDTSFG 337 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 MF S+ P PE I V+ KIG +L +I +RGHTD P+++ DNWRLS RA A Sbjct: 338 MFAVGSAEPRPELIRVIDKIGPLLMKRQGMIIVRGHTDNRPYKSETYDNWRLSTARAQMA 397 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 Y +L++SGV RI + G+A R K+ +DP + NRRI+IL+ +++ Sbjct: 398 YYMLVRSGVDAQRIEHVEGYADRRPKLQNDPAAAQNRRIEILIREKR 444 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 3/75 (4%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP- 71 + +I++++ A + ++ G WKI YADFMT +MAFFLVMW++NA + D K+ + YFNP Sbjct: 7 ELVIVRRRSAFAEEAHHGGVWKIAYADFMTAMMAFFLVMWLLNALNQDQKQVVASYFNPI 66 Query: 72 -FGKNLMTASKGIFD 85 +N A KG+ D Sbjct: 67 KLAEN-APAPKGLKD 80 >gi|288942642|ref|YP_003444882.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288898014|gb|ADC63850.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 305 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 143/315 (45%), Gaps = 63/315 (20%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WKI +ADF T +MAFF+++WI+ +T +D K AI YFN NP Sbjct: 24 GAWKIAFADFATAMMAFFMLLWIMGSTTEDQKAAISDYFN-----------------NP- 65 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 SV + I ++ + Q + K SL D Sbjct: 66 -------------------SVFMGIATSPSQAQ--------------GEGTGSKPSLI-D 91 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK---ISSTLSGLV 207 E D+ T E + + L L++E+ A R L++L ++ S TL+ Sbjct: 92 FEGAIDMGPPTP-EPELTALDPERLDELAREQDAA--RLAALKELLERKLDQSETLA-PY 147 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 D ++ ++ E R I +D+ + MFD S+ T +L+++G ++ IS Sbjct: 148 KDQLLIDIVPEGLRVQI----VDKEHRSMFDLGSAKLKDYTSDILRELGGLINQVPNRIS 203 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 + GHTDA P ++ NW LS +RA +A + L+ G+ D++ ++ GFA SDP Sbjct: 204 LTGHTDARPLGGLSYSNWELSTERANAARRALVAGGMRADKVGRVVGFASTVPFDTSDPN 263 Query: 328 NSANRRIDILVEDRQ 342 N NRRI ++V R+ Sbjct: 264 NPINRRISLIVMTRE 278 >gi|149928472|ref|ZP_01916707.1| flagellar motor protein [Limnobacter sp. MED105] gi|149822806|gb|EDM82057.1| flagellar motor protein [Limnobacter sp. MED105] Length = 322 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 70/318 (22%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WKI YADF+T +MAFFL+MW++ +T + K I YFN L A G P Sbjct: 27 AWKIAYADFVTAMMAFFLLMWLLGSTSEGDLKGISDYFN---SPLKVALVG-----GPGS 78 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 ++ + ID ++++ +K GST++ +NS ++ +L R Sbjct: 79 GTATSVIDAG-GTDLSRSVGQIKSGSTDKA-------------TNSSNADATAEALER-- 122 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADN 210 KRL +L +I GL+ A + Sbjct: 123 -----------------------------------AESKRLLELKGEIE----GLIDASD 143 Query: 211 IVKG----VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 ++K ++ + T G+ I I+D+RN PMFD S++ +L+ + ++L + Sbjct: 144 LMKQFKNQIMLDITPEGLRIQIVDERNRPMFDSGSAVLKDYMKDILRNLTKLLNQVPNKL 203 Query: 267 SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++ GHTDA+P+ N NW LS DRA ++ + + +G+ + ++ ++ G A Sbjct: 204 TLSGHTDATPYAAGNKGYSNWELSADRANASRREMTLAGMPDSKMLRVVGLASSVSLDEK 263 Query: 325 DPMNSANRRIDILVEDRQ 342 DP + NRRI I+V +++ Sbjct: 264 DPYAAVNRRIAIVVMNKR 281 >gi|87121902|ref|ZP_01077787.1| flagellar motor protein [Marinomonas sp. MED121] gi|86162700|gb|EAQ63980.1| flagellar motor protein [Marinomonas sp. MED121] Length = 304 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 85/325 (26%), Positives = 140/325 (43%), Gaps = 64/325 (19%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 II++ + ++ G+WKI ADF +MAFFLVMWIIN AI+ YFN P K Sbjct: 8 IIRRVKKVKKGGHHGGAWKIALADFALAMMAFFLVMWIINVASPQELAAIQGYFNDP--K 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + TA S N IDL G + K ++L+ N+ Sbjct: 66 GMSTAGY------------SNNPIDL---------------GGSPAKSTERKLDINLPDP 98 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + Q+ + K D+ +D + ++E D Sbjct: 99 GSVQRPDSVK----EDANSHRD---------QVAEQEQ--------------------AD 125 Query: 195 LAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 LA + G V + + + + E T GI ++++D++N PMF + S +P+ + + Sbjct: 126 LAAALGKKFEGEKVFEAVKENLQIEITPDGIRVTLLDKQNKPMFAQGSGRLMPDFELAMV 185 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 IG+VL+ + + GHTD+S + NW LS RA A ++L + G + R ++ Sbjct: 186 NIGQVLSGLNNKLVVSGHTDSSAYSFAGLGNWELSAMRANEARRLLREGGAGDTRFVQVM 245 Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338 G + +DP NRR+ +L+ Sbjct: 246 GLSDTAPYDRTDPAAGINRRVSVLL 270 >gi|157373190|ref|YP_001471790.1| OmpA/MotB [Shewanella sediminis HAW-EB3] gi|157315564|gb|ABV34662.1| OmpA/MotB [Shewanella sediminis HAW-EB3] Length = 336 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 141/324 (43%), Gaps = 44/324 (13%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 +IIK++ + + G+WK+ +ADF +MA F+V+WI+ D + I QY N G Sbjct: 8 LIIKRRKRQKRSATHGGAWKVAFADFTLAMMALFMVLWILQIADQQERTMIVQYLN--GD 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + S FD P + IDL I + T +K + N+I Sbjct: 66 MFASGSINPFDLSQSP-----SMIDL--QGSIALQQAIIPATGTGVEKAGPAIHNHI--- 115 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 G+D K+ E N +P + + +L+ Sbjct: 116 -----------------PVGEDNAKAGR-----GPELNSLVPG-------KFETQAQLEF 146 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LA+++ S ++ + N+ V + G+ I I D + MF + SS P +L Sbjct: 147 LAREVDSVITEV---NLSANVEIKVVPQGVRILIHDNVHQFMFTRGSSNMKPYFEDLLMA 203 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +G +L ISI GHTD++P+ NW LS RA A +VL GV +I +++G Sbjct: 204 LGPLLGGVENKISISGHTDSTPYAGKTFTNWELSSKRALLARRVLEYGGVKRHQIIQVTG 263 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A I +DP +ANRRI++LV Sbjct: 264 MADQSPYIQNDPAAAANRRIEMLV 287 >gi|188993235|ref|YP_001905245.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris str. B100] gi|167734995|emb|CAP53207.1| motB2 [Xanthomonas campestris pv. campestris] Length = 392 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 157/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D ++ + L + DL+++I+K + L P + Sbjct: 109 KRDN--------AADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G++ Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMA 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L ++P N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276 >gi|21233083|ref|NP_639000.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770023|ref|YP_244785.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris str. 8004] gi|21114936|gb|AAM42924.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575355|gb|AAY50765.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str. 8004] Length = 393 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 157/333 (47%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D ++ + L + DL+++I+K + L P + Sbjct: 109 KRDN--------AADTDVDSRAKDKKRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G++ Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMA 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L ++P N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276 >gi|325915929|ref|ZP_08178225.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] gi|325537896|gb|EGD09596.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] Length = 396 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 63/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 ---NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +P S G+ N P +S + I L + D+ G QK + R Sbjct: 63 RNPSPLSGKSPAPSPGM----NGPGGASTSMIKLG-------GTADMAKG---QKDEMGR 108 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +N ++ +S +D + + L + DL+++I+K + L P + Sbjct: 109 KRDNA--------ADTDVDSRAKDKRRLEALMQ--DLKEAIDKSQA--LEPFKDQ----- 151 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L + T G+ I I+D++N PMFD P Sbjct: 152 ----------------------------LLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKP 183 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 T+ +L+++ + ISI GHTD + + + A NW LS DRA +A + L+ G+ Sbjct: 184 YTVDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGME 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +++++ G + L ++P N NRRI I+V Sbjct: 244 DAKVTRVVGLSSSVLFDKTNPQNPINRRISIVV 276 >gi|283851000|ref|ZP_06368285.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283573646|gb|EFC21621.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 344 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 51/329 (15%) Query: 15 IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 IIIK KKVA + GSWK+ YAD +T +MAFFL+MW++N D K+ + YFN F Sbjct: 11 IIIKRVKKVAAG---AHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQDKKEQLASYFNDF 67 Query: 73 GKNLMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 IF QNP P + L + +GS +++ ++ Sbjct: 68 ---------SIF--QNPGPSAQLLDSGGLGPPGAV--------VGSQDERP-------DV 101 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-- 189 + + K T D + G+ L D + + + ++ + +A++++ Sbjct: 102 AIDRDGKAPSGGKGQGTGDLDGGRQL----DAKAAAEAQAAAKAEAAAEAQAVALEQQVE 157 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K LQ+ +++ +S V E + I I +D+ + P+FD LP+ Sbjct: 158 KALQESVPELAGQVS----------VTQEKDKVRIEI--MDKSDRPLFDLGGVALLPDAQ 205 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + V+ ++I GHTDA + NW LS RA SA +++++ G+ D++ Sbjct: 206 RILAAVTGVIRKDGIKVAIEGHTDAYRYSGT-YSNWDLSAGRALSARRLMLQQGLPPDQV 264 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 + +SGFA R + P+++ NRRI +L+ Sbjct: 265 AAVSGFADTRPYVPGKPLDARNRRISLLL 293 >gi|254699266|ref|ZP_05161094.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513] gi|261749708|ref|ZP_05993417.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513] gi|261739461|gb|EEY27387.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513] Length = 345 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 153/366 (41%), Gaps = 68/366 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+++ D ++ G WKI YADFMT A+ YFNP Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMT---------------------AMASYFNPV 48 Query: 73 GKNLM---TASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQR 126 LM ++ KG+ +N +R K+ D+ + TK D + + +++ Q Sbjct: 49 --KLMDRHSSPKGV---ENVDQRD--GKVRFESDQQVESSTKVVNDTTVRPASDQEERQL 101 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY------------- 173 L+ + H L S KG + + E Y Sbjct: 102 FREPYAMLA---ELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKA 158 Query: 174 ---FLPP----LSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFET---- 219 PP + + L + K+ + +L + +G A N K E Sbjct: 159 VGDLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDV 218 Query: 220 ----TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA Sbjct: 219 TVVPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDAR 278 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRID Sbjct: 279 PFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRID 338 Query: 336 ILVEDR 341 I ++ + Sbjct: 339 IFIKSK 344 >gi|240137207|ref|YP_002961676.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1] gi|240007173|gb|ACS38399.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1] Length = 468 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++A+ + S +G A + E RTG +LISI D+ N MF S+ P P+ + Sbjct: 323 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 376 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L++I ++L + +RGHTD PFR+ DNWRLS RA A +L++ G+ E RI + Sbjct: 377 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 436 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 I G+A + +IA++P + NRRI+IL+ Sbjct: 437 IEGYADRQPRIANNPKAAENRRIEILL 463 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YFNP Sbjct: 8 IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67 Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99 +T KG+ D Q N P S + K D Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96 >gi|218528676|ref|YP_002419492.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|218520979|gb|ACK81564.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] Length = 462 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++A+ + S +G A + E RTG +LISI D+ N MF S+ P P+ + Sbjct: 317 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 370 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L++I ++L + +RGHTD PFR+ DNWRLS RA A +L++ G+ E RI + Sbjct: 371 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 430 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 I G+A + +IA++P + NRRI+IL+ Sbjct: 431 IEGYADRQPRIANNPKAAENRRIEILL 457 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YFNP Sbjct: 8 IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67 Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99 +T KG+ D Q N P S + K D Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96 >gi|254559218|ref|YP_003066313.1| chemotaxis protein MotB [Methylobacterium extorquens DM4] gi|254266496|emb|CAX22260.1| Chemotaxis protein MotB [Methylobacterium extorquens DM4] Length = 474 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++A+ + S +G A + E RTG +LISI D+ N MF S+ P P+ + Sbjct: 329 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 382 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L++I ++L + +RGHTD PFR+ DNWRLS RA A +L++ G+ E RI + Sbjct: 383 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 442 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 I G+A + +IA++P + NRRI+IL+ Sbjct: 443 IEGYADRQPRIANNPKAAENRRIEILL 469 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YFNP Sbjct: 8 IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67 Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99 +T KG+ D Q N P S + K D Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96 >gi|254504256|ref|ZP_05116407.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222440327|gb|EEE47006.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 471 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 23/183 (12%) Query: 179 SKEKILA-MKRKKRLQDLAKKI------SSTLSG--LVAD-----NIVKGVLFETTRT-- 222 SK +I+A + R+ + LA + + T+ G LVA+ + +G L E T Sbjct: 283 SKNQIVAHVSRRDQETSLAAEAEGGATEAETVPGALLVAELTTVLDAAEGTLLENTAAQI 342 Query: 223 -------GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G LIS+ D +N MF S+ P PE + +L+++G+V++ + I I GHTDA Sbjct: 343 TVVRQDDGALISLTDDQNFGMFAIGSAEPRPELVSLLERLGKVISKTGAQIVITGHTDAR 402 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 PF++ DNWRLS RA+ A +L + GV DR +I G A LK A DP ++NRR++ Sbjct: 403 PFKSKTYDNWRLSSARAHMALYMLSRGGVGADRFVRIEGAADRHLKNAEDPFAASNRRVE 462 Query: 336 ILV 338 I + Sbjct: 463 IYL 465 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 ++ +I++++ DD G WKI YADFMT LMAFFLVMW+IN TD+ ++ + QYFNP Sbjct: 3 NEIVIVRRRHNWDDDEKPHGVWKIAYADFMTALMAFFLVMWLINVTDESVRRGVAQYFNP 62 >gi|170741408|ref|YP_001770063.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168195682|gb|ACA17629.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 441 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 86/150 (57%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L +L ++ + L V T G LISI D+ N MF+ S+ P + + Sbjct: 290 LAELKAEVLKAVQPLATGAPAPKVEVRRTGEGTLISITDELNFSMFNVGSAEPQAKVVKA 349 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L++I +VL+ I +RGHTDA PF++ + DNWRLS RA A +L++ GV+E RI + Sbjct: 350 LERIAKVLSSRPGQIVLRGHTDARPFKSESYDNWRLSSARAQMAAYMLIRGGVAERRIVR 409 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDR 341 I G A + + SDPM + NRRI+IL+ ++ Sbjct: 410 IEGHADRQPRNPSDPMAAENRRIEILLREK 439 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 III ++ D+ ++ +WKI ADFMT +M+ FLV+W++N+T +TK AI YFNP Sbjct: 8 IIIVRRRGDDEDGHHSAAWKIALADFMTAMMSLFLVLWLVNSTSKETKSAIADYFNPIRL 67 Query: 75 NLMTAS-KGIFDEQNPPERSSQ 95 M+ KG+ D N P S + Sbjct: 68 AEMSPEKKGLRDPTNAPSDSGE 89 >gi|163850073|ref|YP_001638116.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens PA1] gi|163661678|gb|ABY29045.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1] Length = 468 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++A+ + S +G A + E RTG +LISI D+ N MF S+ P P+ + Sbjct: 323 EIARAVPSLPNGAPAPQV------EVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKA 376 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L++I ++L + +RGHTD PFR+ DNWRLS RA A +L++ G+ E RI + Sbjct: 377 LERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDR 436 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 I G+A + +IA++P + NRRI+IL+ Sbjct: 437 IEGYADRQPRIANNPKAAENRRIEILL 463 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YFNP Sbjct: 8 IIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPVKL 67 Query: 75 NLMTAS-KGIFDEQ---NPPERSSQNKID 99 +T KG+ D Q N P S + K D Sbjct: 68 AEVTHDRKGVNDPQDTPNDPAPSGKGKGD 96 >gi|107024396|ref|YP_622723.1| flagellar motor protein MotB [Burkholderia cenocepacia AU 1054] gi|116688278|ref|YP_833901.1| flagellar motor protein MotB [Burkholderia cenocepacia HI2424] gi|170731591|ref|YP_001763538.1| flagellar motor protein MotB [Burkholderia cenocepacia MC0-3] gi|105894585|gb|ABF77750.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116646367|gb|ABK07008.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] gi|169814833|gb|ACA89416.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 339 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 91/329 (27%), Positives = 148/329 (44%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +Y F Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEY---FNMP 65 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 L A G D RSSQ SI I DL S+ +R + Sbjct: 66 LKAAILGSGD------RSSQES---SI---INGGGRDL---SSVDAGTLRRTDGT----- 105 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + + ++ E L L + + A++ L+ Sbjct: 106 ---------TSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQIR----------------IDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|182679602|ref|YP_001833748.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635485|gb|ACB96259.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 416 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 8/161 (4%) Query: 179 SKEKILAMKR-KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 SKE + + R K L + KKIS+ S + + E+T G+L+++ D MF Sbjct: 258 SKELVAELNRIKSELNSVQKKISAAPSTPI-------IEVESTSEGVLLNLTDDVTYSMF 310 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 SS P +T+ +++K+ +L T + IRG+TD P+++ DNWRLS RA A Sbjct: 311 AVGSSEPQKQTVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQY 370 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +L++ G+ R+ I G+A LK + DP S NRRI+ILV Sbjct: 371 MLIRGGLDPKRVEHIEGYADRHLKNSEDPNASVNRRIEILV 411 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 59/85 (69%), Gaps = 3/85 (3%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ +++ +IIK++V+ + ++ G+WKI +ADFMT LMA FLV+W+IN+ ++ TK +I + Sbjct: 2 SENHNEIVIIKRRVSHEGG-HHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIAR 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPER 92 YFNP MT + F +NP E+ Sbjct: 61 YFNPIKLVDMTPMQKGF--RNPSEK 83 >gi|294013095|ref|YP_003546555.1| chemotaxis MotB protein [Sphingobium japonicum UT26S] gi|292676425|dbj|BAI97943.1| chemotaxis MotB protein [Sphingobium japonicum UT26S] Length = 351 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/341 (24%), Positives = 136/341 (39%), Gaps = 76/341 (22%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N+ + II+KK V ++ G+WK+ YADF+T +MAFFL+MW++ AT + +K + Sbjct: 9 NEPEPRPIIVKKIVVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQRKGLAD 68 Query: 68 YFNP---------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 YF P G N M + ++N P Q + ++I Sbjct: 69 YFTPTLVQLKEGSAGSNGMFGGDSMTAKENYPTTGGQGNLAITIPRDA------------ 116 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 S T+D +G K+ D K + Sbjct: 117 ---------------------------SGTKD--QGGKATKAADRAK---------FESI 138 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 KE M R++ ++ L K I F T G+ I +ID+ + MF Sbjct: 139 RKELEARMARRQGIRKLLKNIR----------------FTETHEGLRIDLIDEADFAMFA 182 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ 297 + LP+ ++ ++ + + +RGHTD P+ +NW LS RA + + Sbjct: 183 MGTDRLLPQARELVNEVAATIRTMPNPLIVRGHTDGLPYSAGQTMNNWMLSSARAEATRK 242 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L SG+ DR ++I G A D + NRR+ I++ Sbjct: 243 ALAASGIGNDRFARIEGVADREPFAKGDVYDPRNRRMSIIL 283 >gi|170748097|ref|YP_001754357.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170654619|gb|ACB23674.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 401 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 77/129 (59%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V + T G+LI++ D N MF S+ P PET+ ++++ + LA I +RGHTD+ Sbjct: 273 VEVQGTPEGLLINVTDDLNFSMFAVGSAEPRPETVRAMERLAKALAARPGRIVVRGHTDS 332 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 PFR+ DNWRLS RA+ A +L ++G+ E RI ++ G A + A+DP NRRI Sbjct: 333 RPFRSEVYDNWRLSTARAHMASYMLTRAGIDEARIWRVEGAADRMPRNAADPKAPENRRI 392 Query: 335 DILVEDRQG 343 +IL++ G Sbjct: 393 EILLQGSPG 401 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N II+ ++ + +D ++ G WKI +ADFMT LMA FLV+W+I AT+D+TK +I YFN Sbjct: 4 NPPEIIVVRRASDEDDGHHGGVWKIAFADFMTTLMALFLVLWLIKATNDETKTSIANYFN 63 Query: 71 PFG-KNLMTASKGIFDEQ 87 P + KG+ D Q Sbjct: 64 PISLSEPLPLRKGVNDPQ 81 >gi|94495402|ref|ZP_01301982.1| flagellar motor component [Sphingomonas sp. SKA58] gi|94424790|gb|EAT09811.1| flagellar motor component [Sphingomonas sp. SKA58] Length = 350 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 141/341 (41%), Gaps = 77/341 (22%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA--- 64 N+ + +I+KK + ++ G+WK+ YADF+T +MAFFL+MW++ AT + +KA Sbjct: 9 NEPEPRPVIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQRKALAD 68 Query: 65 ------IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 +E G + + + N P + ++I T G+ Sbjct: 69 YFTPTLVELKMASAGSTGLMGGDSLTGKDNYPTTGGVGNLSITIPRDAT--------GTK 120 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 +Q + R ++ Q+ E K DLE +N++ Sbjct: 121 DQGGKAMRA-------ADRQKFESIKK----------------DLEARMNRK-------- 149 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 GL + K V F TR G+ I +ID+ + MF Sbjct: 150 --------------------------GL--SRLRKNVRFTETREGLRIDLIDEADFAMFA 181 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQ 297 + +PE ++ ++ VL + +RGHTDA P+ + A +NWRLS RA S Q Sbjct: 182 MGTDRLVPEARALVGEVASVLKTMPNDLIVRGHTDALPYASGKAMNNWRLSSARAESTRQ 241 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L SG+ R ++I G A + + + NRR+ I++ Sbjct: 242 ALADSGIGNPRFARIEGVADREPFVKDNRYDPRNRRMSIIL 282 >gi|115523189|ref|YP_780100.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisA53] gi|115517136|gb|ABJ05120.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 423 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L I++ L+ L A + V T G+LI++ D N MF S+ P P + L K Sbjct: 277 LQAAINAALASLGAAHPATEV--RETSEGLLINLTDDANYGMFANGSAEPTPGLVRTLDK 334 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 I +++ ++ +RGHTD P+R+ DNWRLS RA+ A+ +L++ G+ RI +I G Sbjct: 335 ITPLISQQRGLVIVRGHTDDRPYRSADYDNWRLSTARAHMAFHMLIRGGLDAKRIERIEG 394 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 +A R K +DP NRRI+IL+ Sbjct: 395 YADRRPKTPNDPSAPQNRRIEILI 418 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +Q+ + III+++ +D G WKI YADFMT +MAFFLVMW+++AT +T++++ Sbjct: 3 DQDRPELIIIRRRSDLD-VEEKSGVWKIAYADFMTAMMAFFLVMWLMSATTPETRESVAT 61 Query: 68 YFNPF 72 YFNP Sbjct: 62 YFNPI 66 >gi|327398736|ref|YP_004339605.1| OmpA/MotB domain-containing protein [Hippea maritima DSM 10411] gi|327181365|gb|AEA33546.1| OmpA/MotB domain protein [Hippea maritima DSM 10411] Length = 287 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/335 (27%), Positives = 143/335 (42%), Gaps = 56/335 (16%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +EN + I+KK +W++ Y DFMT +MAFFLVMW+I AT+ +K + Y Sbjct: 3 EENQEGGIVKKCKKCKCEEGGGSAWEVAYGDFMTSMMAFFLVMWLIAATNVKQRKVLSTY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F G +T + + + S++ L++ + I ++ + S +K Sbjct: 63 FTQPGATSLTEGSSMLPSKGVFDIGSRS---LTVSQRIP----EMPLPSVQPQK------ 109 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + KG+ L + K + K S I K+ Sbjct: 110 ----------------------TLKGRGL-----IPKVLRK---------SGGGIGQSKQ 133 Query: 189 KKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 L ++ KKI ++ L N +K E T G+ I I D+ PMF S Sbjct: 134 TMNLYNIMKKIQQVIASKKELLQYRNQIK---MEITEEGLRIVIFDKNKRPMFYPGSDKL 190 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P VL + + LA + I+I GHTDA+P+ NW LS RA +A + + +GV Sbjct: 191 EPWAKEVLDIVAKQLADISNKITIEGHTDANPYVIGGLSNWDLSTMRANAARREIQTNGV 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 S R I G+ R +DP + NRRI ILV+ Sbjct: 251 SVSRFDSIVGYGDTRPVPGTDPKDPINRRIVILVK 285 >gi|157959885|ref|YP_001499919.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157844885|gb|ABV85384.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 336 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/324 (27%), Positives = 140/324 (43%), Gaps = 44/324 (13%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 IIIK+K + G+WK+ +ADF +MAFF+V+WII D + I ++ G Sbjct: 8 IIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQ--GD 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 S FD + P L + +T L S+ + L N I Sbjct: 66 LFEAGSINPFDLSSSPSM-------LDFEGQMTIQEPVLPTSSSGAGTRGPALHNRIPEG 118 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 N+ ++ KG +L N LP + + +L+ Sbjct: 119 ENNAKAG-----------KGPEL--------------NAMLPG-------KFETQAQLEV 146 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LA++I + + VK + G+ I + D N MF + SS P +L Sbjct: 147 LAREIDRVIEDVSMSANVK---LQVVPQGVRILMHDNINKFMFTRGSSEMKPYFEDLLMA 203 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +G VL+ +SI GHTD++PF NW LS RA A +VL +GV +++ +++G Sbjct: 204 LGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKRALLARRVLGYAGVKNNQVLQVTG 263 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A I+ DP +ANRRI++++ Sbjct: 264 MADQAPYISHDPAAAANRRIEMII 287 >gi|300024596|ref|YP_003757207.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526417|gb|ADJ24886.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 424 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 5/153 (3%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + K+LQD ISS L+ + + T G+L+S++D + MF+ S+ P P Sbjct: 274 KAKKLQD---DISSALA--KGSRAAPEIEVKATSEGLLVSLLDGADFGMFEVGSAKPRPA 328 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ + K+G+VL I +RGHTD+ ++N DNWRLS RA AY +L++ G++E Sbjct: 329 LVLAMSKVGDVLKSLPGSIVVRGHTDSRAYKNGNYDNWRLSAARAQMAYYMLVRGGIAET 388 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R + I G A KI S+ NRRIDIL+++ Sbjct: 389 RFAAIEGRADRDPKIPSNREAPENRRIDILIKE 421 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S+G ++ + +I++++ + D+ ++ G WKI YADFMT +MAFFLVMW+INA D T Sbjct: 2 SNGQEDVSSQPLVIVRRRRSHDEE-HHGGVWKIAYADFMTAMMAFFLVMWLINAADKKTI 60 Query: 63 KAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 + YFNP + A KG+ D + ++ K + + +H Sbjct: 61 VQVAAYFNPMRLTDRFEAPKGLEDLNEIDAKQNEEKSEKGLSQH 104 >gi|158327337|emb|CAM82843.1| flagellar motor protein MotB [Yersinia enterocolitica W22703] Length = 302 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/337 (23%), Positives = 147/337 (43%), Gaps = 73/337 (21%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N Q I+K+ + + G+WK+ +ADF +MA F+V+WI+ ++ ++ I Sbjct: 4 NARGGQTTIVKRAARKKHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVA 63 Query: 68 YFNPFGKNLMTASKGIFDEQN-----PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 N K IF +Q+ +S K S+D H Sbjct: 64 QLN---------GKTIFAQQSFISIPSKSKSGGGKFSDSVDGH----------------- 97 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 +Q++ K++L + + E+S+ + Sbjct: 98 ---------------EQAKETKSNLA---------VEVPEPEQSLEE------------- 120 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L + + +++L + I+ S A + +K E G+ I I D ++ MF +SS+ Sbjct: 121 -LVDRSGREMEELTRIITQITSAYDAQSNLK---MEVVPQGLRILIQDDKHRDMFQRSSA 176 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK 301 + P +L ++ I I GHTDAS +R+ + +NW LS +RA A++ L+K Sbjct: 177 VLTPFFSRLLAELAPAFNEMDNKIIITGHTDASRYRDQVLYNNWNLSGERALMAHKALVK 236 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 G+ +DR+ +I+ A L +++P+ + NRRI+I+V Sbjct: 237 GGLDDDRVLQINAMAEQMLLDSAEPLAAKNRRIEIMV 273 >gi|158422249|ref|YP_001523541.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] gi|158329138|dbj|BAF86623.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] Length = 472 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 72/119 (60%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T+ GI++S+ D N MF S++P + + KIGE L + IRG+TD P+R+ Sbjct: 350 TKEGIVLSLTDDINYSMFPVGSAVPDGRLVRAMAKIGEALGKRPGEVVIRGYTDGRPYRS 409 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DNWRLS RA+ Y +L++ G+ E R++ I G+A LK ++P + NRRI+IL+ Sbjct: 410 DTYDNWRLSTARAHMTYYMLVRGGLQEPRVAMIEGYADRNLKNKAEPYAAENRRIEILL 468 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 6/83 (7%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ + IIIK+ + ++ +WK+ +ADFMT +MAFFL+MW+IN TD D +KAI YF Sbjct: 6 EHHELIIIKRHEDEEHEHHS-SAWKVAHADFMTAMMAFFLIMWLINVTDKDVRKAIASYF 64 Query: 70 NPFG-KNLMTASKGIFDEQNPPE 91 NP MT KG+ N PE Sbjct: 65 NPVHLAESMTERKGL----NEPE 83 >gi|167626173|ref|YP_001676467.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167356195|gb|ABZ78808.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 336 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 64/334 (19%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---- 70 ++I++K + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 8 VVIRRKKRSKAKAGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLNGDLH 67 Query: 71 ------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PF + + +FD Q +++I + + L +T ++ Sbjct: 68 DDGSINPFN---LGGAPSMFDFQG----------NIAIQQAV------LPAAATGVERSG 108 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + N I Q +E+ K + +G +L N +P Sbjct: 109 PAMHNRI-----PQGTENAK------AGRGPEL--------------NSLVPG------- 136 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + +L+ LAK+I + + ++ V + G+ I + D N MF + S+ Sbjct: 137 KFETQAQLEFLAKEIDKVIENV---SMSANVELQVVPQGVRILMHDNVNQFMFTRGSADM 193 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P +L +G +L+ I+I GHTD+SP+ NW LS RA A +VL G+ Sbjct: 194 KPYFEDLLMALGPLLSQVENKITISGHTDSSPYAGKKFTNWELSSKRALLARRVLEYGGL 253 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ +++G A + DP +ANRRI++LV Sbjct: 254 RRHQVIQVTGMADQAPYVIKDPAAAANRRIEVLV 287 >gi|295699068|ref|YP_003606961.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295438281|gb|ADG17450.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 344 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/318 (27%), Positives = 131/318 (41%), Gaps = 78/318 (24%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WKI YADF+T +MAFFL+MW++ +T K+ GI D N P Sbjct: 34 GAWKIAYADFVTAMMAFFLLMWLLGSTSKYDKQ------------------GIEDYFNTP 75 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 S L ++ + + S+ + Sbjct: 76 LSS---------------------------------------LLGGNEGTAAARPSVVQG 96 Query: 151 SEKGKDLCKSTDLEKSIN-KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 G+D+ +D + K + PP + + KRLQ L K+S+ + Sbjct: 97 G--GRDI---SDTRPGVGTKSQTEPTPPRAAMPAVTPMDAKRLQQLKAKLSALIEQSSVL 151 Query: 210 NIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 N K + T G+ I I+D +N PMF SS P + +L +IG L ISI Sbjct: 152 NAFKDQIRISITNEGLRIEIVDSQNRPMFASGSSKLQPYAVTILTQIGAALNDVDNRISI 211 Query: 269 RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA------HHRL 320 GHTDA P+ NW LS +RA +A + L+ G+ D++ ++ G A H Sbjct: 212 AGHTDAVPYTAGPEGYSNWELSSERANAARRALVAGGMHGDKLLQMRGLADVLPLNSH-- 269 Query: 321 KIASDPMNSANRRIDILV 338 +A +P NRRI ILV Sbjct: 270 -VADEPT---NRRISILV 283 >gi|149908742|ref|ZP_01897403.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36] gi|149808284|gb|EDM68223.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36] Length = 334 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 146/324 (45%), Gaps = 41/324 (12%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 IIIK+K G+WK+ +ADFM LMAFF+V+WI+ +D D +K F + Sbjct: 5 IIIKRKRRSRGKSKGGGAWKVAFADFMLALMAFFMVLWILAVSDADERKE-------FSE 57 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 N+ S +F+ ++ P S N + SI DL + L Sbjct: 58 NIRNYS--LFESESNPFDFSGNPLPTSI-------GADLSV------------------L 90 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + Q + K+S+++ + + + ++ D E + + L K ++ + +L Sbjct: 91 DSKHQPDLTKHSVSKKTARSLN-QRTADDEGDSGYGDKPMMNSLLKGQLTS---PDQLAL 146 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LA K+ + + A + + E G+ I + D MF + S+ P VL+ Sbjct: 147 LASKLEAITDSIGA---AENIDIEVVPQGLRILLHDNAKHKMFRRGSAQMTPFFQDVLRS 203 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + V + I GHTD S F N A NW LS RA A Q+L G+ +R++++ Sbjct: 204 LAPVFIPIENKLMISGHTDRSKFHNAAFTNWELSSQRALQARQMLQIGGMPRERVAQVVA 263 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 + A++P +S NRRI++L+ Sbjct: 264 MSDTMPIDAANPKSSVNRRIELLL 287 >gi|288962674|ref|YP_003452968.1| chemotaxis protein [Azospirillum sp. B510] gi|288914940|dbj|BAI76424.1| chemotaxis protein [Azospirillum sp. B510] Length = 347 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/342 (23%), Positives = 149/342 (43%), Gaps = 19/342 (5%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 II+K+ + D + G+WK+ YADF+T +M FFLVMW++N T + +K I YFNP Sbjct: 10 IIVKRHLGSHDEEEHNGTWKLAYADFVTAMMTFFLVMWLMNITTTEQRKGIADYFNPVAV 69 Query: 75 NLM-TASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQR----- 126 + + + G+ ++ + S + + D+ + V +G ++++ ++ Sbjct: 70 SQSNSGADGMLAGRSVDKSGSLTTPNAAGDQASPVASPPVVASVGDSDRQPAGRKDPMPH 129 Query: 127 -----LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 + S+ + + + + ++ E L S E Sbjct: 130 PPGGTVPPVDLLRPASESAPGAPATEPPAPQMAPQMAPQASAPQATRAELEALLERQSSE 189 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKS 240 + K L+ L + + ++ N ++G L + G+ + + DQ MF Sbjct: 190 ----LGEKVALESLERDLRQRIAASPDLNALQGSLVIQQVPEGLRVQLTDQARFSMFKVG 245 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299 S+ + +++ + LA I I GHTD + A+ NW LS DRA +A + L Sbjct: 246 SAQMNDQGRRLMRMVASALAAVPNPIGITGHTDGLGYAADAKYGNWELSSDRANAARREL 305 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 + SG+ RI ++ G A A P++ +NRRI I + R Sbjct: 306 IASGIPNTRIVRVEGRADLDHFGAGGPLDPSNRRISITLLRR 347 >gi|323139665|ref|ZP_08074707.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] gi|322395097|gb|EFX97656.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] Length = 351 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 70/116 (60%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+LI++ D N MF+ S P P+ + ++ +IG+VLA T I +RGHTD + + + Sbjct: 231 GVLITLTDDANFSMFEVGSIEPKPQLVRIIGQIGKVLAKKTGEIEVRGHTDGRSYTSKSY 290 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DNWRLS DRA +L++ G+ R+ KI G A LK DP+ NRRI+IL+ Sbjct: 291 DNWRLSSDRATVVNYMLIRGGLPPARVGKIVGMADRHLKTPKDPLAPVNRRIEILL 346 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 9/90 (10%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N III+KK D ++ G WK+ +ADFMT +MAFFLVMW+IN+T +TK I QYFN Sbjct: 6 NGSPIIIRKKRGDGDEDHHGGVWKLAFADFMTAMMAFFLVMWLINSTSKETKAVIVQYFN 65 Query: 71 PFGKNLM---TASKGIFDEQNPPERSSQNK 97 P L+ A KG+ D P+++ Q K Sbjct: 66 PV--QLIDSNPAHKGMRD----PKQTGQGK 89 >gi|89072298|ref|ZP_01158877.1| chemotaxis LafU protein [Photobacterium sp. SKA34] gi|89051830|gb|EAR57282.1| chemotaxis LafU protein [Photobacterium sp. SKA34] Length = 331 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 137/334 (41%), Gaps = 66/334 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N + I+ K+ V + G+WK+ +ADFM LMA FLV+W++ D+ + AI YF Sbjct: 2 QNTEQIVFKRAVKRHSHQQHGGAWKVAFADFMIALMALFLVLWLLQVVDEKERTAIVAYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS---VDLKIGSTNQKKQYQR 126 N + +FDE S N D T NS +D + + Q Sbjct: 62 N---------NSSVFDE------GSGNPFD-------TDNSPSPIDFGGDAADMSAQNAA 99 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + Y N N E+ L P S E Sbjct: 100 MTMKSIYNGNG------------------------------NGPESDALIPGSFET---- 125 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LA + T + A + + T G+ +++ D MF + ++ P Sbjct: 126 --QEQLSILASVVEETAKQVSAQG---NIAIDITPQGLRVTLQDDFKQNMFHRGNANLTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARD-NWRLSLDRAYSAYQVLMKSGV 304 VL I + + I I GHTDA+ F+N +R NW LS RA A Q L+ G+ Sbjct: 181 FFEDVLLTIAPIFKQISNSIIISGHTDATQFKNRFSRQTNWELSSSRANVARQTLISGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DR+ +++G A L DP S NRRI++ V Sbjct: 241 PSDRVLQVAGMAERALLNKQDPSASENRRIELFV 274 >gi|238762341|ref|ZP_04623312.1| Lateral flagellar proton motor protein B [Yersinia kristensenii ATCC 33638] gi|238699326|gb|EEP92072.1| Lateral flagellar proton motor protein B [Yersinia kristensenii ATCC 33638] Length = 302 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 73/342 (21%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M SH Q IIK+ + + G+WK+ +ADF +MA F+V+WI+ ++ Sbjct: 1 MRSHA----RGGQTTIIKRSARKRHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQN---PPERSSQNKIDLSIDEHITKNSVDLKIGS 117 ++ I N + IF +Q+ P +S S NS+D K Sbjct: 57 ERQEIVAQLN---------GQTIFSQQSFISIPSKSKSGGGKFS-------NSIDGK--- 97 Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 +Q++ K++L + D E+S+ Sbjct: 98 --------------------EQAKETKSNLA---------VEVPDPEQSLED-------- 120 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + K +K +++L++ I S A + ++ E G+ I I D + MF Sbjct: 121 ------VVDKSRKEMEELSRIIMQITSAYDAQSNLQ---MEVVPQGLRILIQDDKQRDMF 171 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAY 296 +SS++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A+ Sbjct: 172 QRSSAVLTPFFGRLLAELAPAFNEMDNKIIITGHTDASRYRDQVMYNNWNLSGERALMAH 231 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + L+K G++E R+ +I+ A L ++P+ + NRRI+I+V Sbjct: 232 KALVKGGLTEGRVLQINAMADQMLLDPAEPLAAKNRRIEIMV 273 >gi|145297473|ref|YP_001140314.1| LafU [Aeromonas salmonicida subsp. salmonicida A449] gi|22758827|gb|AAN04225.1| LafU [Aeromonas salmonicida] gi|142850245|gb|ABO88566.1| LafU [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 68/338 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N + IIIK++ P G+WK+ +ADF +MAFF+V+WI+ + + ++A+ Sbjct: 3 NHEQIIIKRQQRRSSAPKGGGAWKVAFADFTLAMMAFFMVLWILAVSSQEEREAVASRLR 62 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDL----SIDEHITKNSVDLKIGSTNQKKQYQR 126 + ++M + FD N P +DL S+ E ++ V Sbjct: 63 DY--SIMDSEANPFDISNSP-----YPVDLGGNPSVLEELSPKFV--------------- 100 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ENYFLPPLSK 180 E+G+ + K + +SI + EN + + Sbjct: 101 -------------------------EEGQRMPKHMERNRSIFSDGVSGGYENLLVGKIEG 135 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E +++ LA I S + A N ++ + G+ I I D M+ + Sbjct: 136 EA--------QMKQLAGFIGSLADQMQAKNNLE---LQLVPQGLRILIRDDDEREMYSRG 184 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S+ P +L + + + I GHTD++PF NW LS DRA A +VL+ Sbjct: 185 SARISPFFRHMLMALAPIFQRVENRVMISGHTDSTPFAGDNYSNWELSSDRAMMARRVLL 244 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 G+ +R+ ++ + L+ +DP S NRRI++LV Sbjct: 245 AGGMPPERVGQVVAMSDTMLENTADPRGSENRRIELLV 282 >gi|303248925|ref|ZP_07335172.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489648|gb|EFL49584.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 355 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 145/336 (43%), Gaps = 71/336 (21%) Query: 15 IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--- 69 IIIK KKVA + GSWK+ YAD +T +MAFFL+MW++N + K+ + YF Sbjct: 10 IIIKRVKKVA---GGAHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQEKKEQLASYFNDF 66 Query: 70 ----NPFGKNLMTASKGIFDEQNPPE---RSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 NP + + S G+ PP S + D++ID + S G Q Sbjct: 67 SLFQNPGPSSQLLDSGGL----GPPAVVVGSQDERPDVAIDRGGKEPS-----GGAGQD- 116 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 T D + GK L E + + + E Sbjct: 117 -------------------------TGDLDGGKRLEAKRRAEAAAKADAAA----KALEG 147 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L +K + +LA ++S T S + I I+D+ + P+FD Sbjct: 148 QLEQALQKDVPELAGQVSVTQS----------------NDKVRIEIMDKADRPLFDLGGV 191 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 LP+ +L + +V+ ++I GHTDA + NW LS RA +A +++++ Sbjct: 192 TLLPDAKRILAAVTDVIKKEGVKVAIEGHTDAYRYSGT-YTNWDLSAGRALAARRMMIQQ 250 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 G+S D+++ ++G+A R + + + NRRI +L+ Sbjct: 251 GLSPDQVAAVTGYADTRPYVPGNLYDPKNRRISLLL 286 >gi|330501121|ref|YP_004377990.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328915407|gb|AEB56238.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 313 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 137/326 (42%), Gaps = 59/326 (18%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 IIIK++ + G+WK+ +ADF +MA F+V+WII D +A N Sbjct: 11 IIIKRRGKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQTQDASRANADMLN---N 67 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L+ GIFD +S +DL + V +++ + R Sbjct: 68 PLVDGGAGIFDG------TSTTPLDL--------DGVPVQVAPRRDPENRAR-------- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 T + G L + E +F PL ++Q+ Sbjct: 106 -------------TPQEDPGAALGEGLPGEP----RRPHFAEPL------------QMQE 136 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LAK + L A+ ++ + G+ I I D MF++ SS P +L++ Sbjct: 137 LAKLMKELALQLDAEANIE---VQVVPQGLRILIKDDAQRFMFNRGSSHLNPHFETLLRR 193 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +L + I GHTD+ P+R + +NW LS DRA A VL+++G+ + ++ Sbjct: 194 LAGILGRVENHLIISGHTDSMPYRGVVGGYNNWNLSGDRALRARNVLVEAGLPTGNVLQV 253 Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338 + A + +DP N ANRRI++L+ Sbjct: 254 AAQADGMPLLPNDPENGANRRIELLL 279 >gi|90422620|ref|YP_530990.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisB18] gi|90104634|gb|ABD86671.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 423 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 ETT G+LIS+ D N MF S+ P P + L KI ++A + + +RGHTD + Sbjct: 299 ETTE-GLLISLTDDVNYGMFATGSAAPSPGLVRALDKITPLIAQNRGQMIVRGHTDNRAY 357 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 R+ DNWRLS RA+ AY +L++ G+ RI +I G+A R K +DP + NRRI++L Sbjct: 358 RSAEYDNWRLSTARAHMAYYMLIRGGLDAGRIERIEGYADRRPKDPNDPSAAPNRRIELL 417 Query: 338 V 338 + Sbjct: 418 I 418 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 6/98 (6%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + III+++ ++D N G WKI YADFMT +MAFFLVMW+INAT+ +T++++ Y Sbjct: 4 QDRPELIIIRRRNSLDVEEKN-GVWKIAYADFMTAMMAFFLVMWLINATNPETRESVAAY 62 Query: 69 FNPFGKNLMTAS-KGIFDEQNPPERSSQNKIDLSIDEH 105 FNP T KGI D P R K D +E Sbjct: 63 FNPIKLTDSTPDRKGIHD----PRRVDPGKADEGDNER 96 >gi|114705809|ref|ZP_01438712.1| flagellar motor protein [Fulvimarina pelagi HTCC2506] gi|114538655|gb|EAU41776.1| flagellar motor protein [Fulvimarina pelagi HTCC2506] Length = 407 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 2/151 (1%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R DL I + L+ + + + V G++IS+ D ++ MF S+ P + Sbjct: 257 RTADLKSDIEAELADM-GEGVPSQVEVSEGEGGLMISLADDFDSGMFSVGSAKPNGAAVQ 315 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +++KI VL I IRGHTDA PF + DNWRLS RA+ AY +L + G+ +R+ Sbjct: 316 MMEKIANVLKTRNGRIIIRGHTDARPFTSENYDNWRLSTARAHMAYYMLTRGGLGAERVE 375 Query: 311 KISGFAHHRLKIASDPMNSANRRIDI-LVED 340 I GFA + K A +P NRRI+I LVED Sbjct: 376 SIEGFADRQPKDAENPEADINRRIEILLVED 406 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG-KNLMTASKGIFDEQNPPE 91 WKI +ADFMT +MAFFLVMW+ N+TD+ T+ + QYFNP + ASKG+ + Q E Sbjct: 40 WKIAFADFMTAMMAFFLVMWLTNSTDEATRTQVAQYFNPIQLTDSTPASKGLKERQAQSE 99 Query: 92 RSSQNK 97 +N+ Sbjct: 100 VEDENQ 105 >gi|119897740|ref|YP_932953.1| flagellar motor protein MotB [Azoarcus sp. BH72] gi|119670153|emb|CAL94066.1| flagellar motor protein MotB [Azoarcus sp. BH72] Length = 357 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 50/314 (15%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WKI YADF+T ++AFFL+MW++ +T + I YF QNP + Sbjct: 25 AWKIAYADFVTAMIAFFLLMWLLGSTAQGDLEGIADYF-----------------QNPLK 67 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + I K + S Q K+ + D+ Sbjct: 68 LAMDGGEGSGDSSSIIKGGGEDLTRSVGQVKR---------------GDVEGDRRINLDA 112 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 KG+ S D + E N + + RL DL +I + + Sbjct: 113 AKGRQ-APSADGKGRDEAESN--------------RERSRLIDLKGRIEAIVEANPDLRQ 157 Query: 212 VKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 K +L + G+ I ++D++N PMF+ +S+ P T +L+ IG L +S+ G Sbjct: 158 FKNQILMDIVNEGLRIQLVDEQNRPMFNSASADLRPYTRDLLRAIGRALNDVGNSVSVSG 217 Query: 271 HTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTD++ + R NW LS +RA ++ + L+ G+ ++ ++ G A ++PM+ Sbjct: 218 HTDSAQYAGGERGFSNWELSSNRANASRRELVSGGLLAGKVVRVVGLADTIPLNRANPMD 277 Query: 329 SANRRIDILVEDRQ 342 + NRRI I+V ++Q Sbjct: 278 AVNRRISIIVLNKQ 291 >gi|237653884|ref|YP_002890198.1| OmpA/MotB domain protein [Thauera sp. MZ1T] gi|237625131|gb|ACR01821.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 330 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 51/313 (16%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WKI YADF+T +MAFFL+MW++ +T + I YF QNP Sbjct: 25 AWKIAYADFVTAMMAFFLLMWLLGSTAQGDLEGIADYF-----------------QNP-- 65 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 K+ + E +S +K G + ++ ++ + + + + ++ Sbjct: 66 ----LKLAMQGGEGTGDSSSIIKGGGEDLSRKVGQVRRGDTPSTRAINLDAAPARVKSEA 121 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E + + I + + RL DL K+ + + + Sbjct: 122 EA-------------------------TAQAIAERRERARLIDLKGKLEAVIEANPSLRQ 156 Query: 212 VKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 K +L + G+ I ++D +N PMF +S+ P T +L++I L +S+ G Sbjct: 157 FKNQLLIDIVSEGLRIQLVDAQNRPMFTSASAELRPYTRELLREIAAALNDVDNRVSMSG 216 Query: 271 HTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTD++ + R NW LS +RA +A + L+ G+ ++ ++ G A DP++ Sbjct: 217 HTDSAQYAGGERGFSNWELSSNRANAARRELVAGGLEAGKMLRVVGLADTAHLNPGDPLD 276 Query: 329 SANRRIDILVEDR 341 ANRRI I+V +R Sbjct: 277 PANRRISIVVLNR 289 >gi|34497482|ref|NP_901697.1| flagellar motor protein MotB [Chromobacterium violaceum ATCC 12472] gi|34103337|gb|AAQ59699.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472] Length = 306 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 3/155 (1%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245 K + RL L +KI T+ K L E T G+ I I+D++N PMFD SS L Sbjct: 112 KEQARLNQLQQKIQQTIDQSELFKQYKNQLKLEMTPEGLKIQIVDEQNRPMFDSGSSRML 171 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSG 303 P T V+LQ++ L ISI GHTDA PF NW LS DRA +A + L+ G Sbjct: 172 PHTRVLLQQLAPELNQLPNRISISGHTDAKPFGGGQGGYSNWELSADRANTARRELVAGG 231 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++E++I ++ G A I SD + NRRI I+V Sbjct: 232 LTENKILRVVGLASANPLIKSDVFSPENRRITIVV 266 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 +WKI YADF+T +MAFFL+MW++ + T I +YF K ++ G D Sbjct: 25 AWKIAYADFVTAMMAFFLLMWLLGSASQGTLNGISEYFKTPLKVALSGGAGAGD 78 >gi|170748396|ref|YP_001754656.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170654918|gb|ACB23973.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 286 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 136/336 (40%), Gaps = 83/336 (24%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II KKV ++ G+WKI YADF+T +MAFFL+MW+I+ T + K + +YF+P + Sbjct: 4 IIIKKVKKAGHAHHGGAWKIAYADFVTAMMAFFLLMWLISMTTQEQKIGLAEYFSPAALS 63 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 T+ G I Y Sbjct: 64 PATSGAG-----------------------------------------------GILY-G 75 Query: 136 NSQQSEHCKNSLTRDSEKG------------KDLCKSTDLEKSI-NKEENYFLPPLSKEK 182 + + K S RD+E+G L D + + N + N+ Sbjct: 76 TALDTAGNKPSTPRDAERGSAEREVTARPTSPGLTSELDASRPVANVQANW-------SA 128 Query: 183 ILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 I ++++ + + D+A+ ++ NIV E T+ G+ +S++DQ MF + S Sbjct: 129 IASLRQALQTMPDIAE---------LSKNIV----IEPTKEGVNVSLVDQDGRSMFREGS 175 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLM 300 P T VL+ + L +SI G+T A P A + W LS RA + ++L Sbjct: 176 VEPYERTRRVLEALAPALRRMPNRLSITGYTAVARPGSARAGEPWSLSAGRALAVREILS 235 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 +GV D S +SG +P + NRR+ I Sbjct: 236 GAGVPNDNFSAVSGRGDTEPVFPDNPYLAPNRRVTI 271 >gi|224824155|ref|ZP_03697263.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224603574|gb|EEG09749.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 302 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 3/159 (1%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245 + K RL L KKI S + K L E T G+ I I+D++N PMFD S+ L Sbjct: 107 QEKTRLAKLQKKIESNIEQSAVLKAYKNQLQLEMTPEGLRIQIVDEQNRPMFDSGSANLL 166 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303 P T +LQ++G+ L +SI GHTDA PF NW LS DRA +A + L+ G Sbjct: 167 PHTRTILQELGKELNGVANRLSISGHTDAKPFGGAQHGYSNWELSADRANAARRELLAGG 226 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + D+I ++ G A I S+ + NRRI I+V +++ Sbjct: 227 LMHDKILRVVGLAAANPLIRSNVFSPENRRIAIVVLNKE 265 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K++ ++ G+WKI YADF+T +MAFFL+MW++ + T + I +YF K Sbjct: 9 IIVKRIKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLGSVSQGTLQGIAEYFRTPLKV 68 Query: 76 LMTASKGIFD 85 + +G D Sbjct: 69 ALAGGQGSGD 78 >gi|260222452|emb|CBA32030.1| Chemotaxis protein motB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 313 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 3/157 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 A K + L LA KI+ST+S + E T G+ I I+D + PMFD SS Sbjct: 122 AKKDAQTLAALAAKIASTISNNPKMAEFSSQIKLEITPDGLQIQIVDDQRRPMFDIGSSS 181 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMK 301 P +L++IG LA IS+ GHTD +P+ N AR NW LS DRA ++ + L+ Sbjct: 182 VKPYMRDILKEIGVTLADVDNKISLDGHTDQTPYGNAARGYSNWELSADRANASRRELIA 241 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +G+ E++++++ G A L +P++ ANRRI ILV Sbjct: 242 AGMPENKLARVVGMASSLLADPQNPLSPANRRISILV 278 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 II K+V + G+WKI YADF+T +MAFFL+MW++ +T + KK I YF Sbjct: 11 IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDKKGISDYF 64 >gi|45442813|ref|NP_994352.1| hypothetical protein YP_3056 [Yersinia pestis biovar Microtus str. 91001] gi|108809034|ref|YP_652950.1| hypothetical protein YPA_3043 [Yersinia pestis Antiqua] gi|150260228|ref|ZP_01916956.1| lateral flagellar proton motor protein B [Yersinia pestis CA88-4125] gi|162420691|ref|YP_001604823.1| hypothetical protein YpAngola_A0200 [Yersinia pestis Angola] gi|165924864|ref|ZP_02220696.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. F1991016] gi|165939072|ref|ZP_02227624.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. IP275] gi|166008977|ref|ZP_02229875.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. E1979001] gi|166212177|ref|ZP_02238212.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. B42003004] gi|167398344|ref|ZP_02303868.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419079|ref|ZP_02310832.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466315|ref|ZP_02331019.1| flagellar motor protein B [Yersinia pestis FV-1] gi|170022980|ref|YP_001719485.1| hypothetical protein YPK_0731 [Yersinia pseudotuberculosis YPIII] gi|218927933|ref|YP_002345808.1| hypothetical protein YPO0747 [Yersinia pestis CO92] gi|229837433|ref|ZP_04457596.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A] gi|229840644|ref|ZP_04460803.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842804|ref|ZP_04462956.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. India 195] gi|294502809|ref|YP_003566871.1| flagellar motor protein [Yersinia pestis Z176003] gi|45437679|gb|AAS63229.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str. 91001] gi|108780947|gb|ABG15005.1| putative chemotaxis membrane protein [Yersinia pestis Antiqua] gi|115346544|emb|CAL19421.1| putative chemotaxis membrane protein [Yersinia pestis CO92] gi|149289636|gb|EDM39713.1| lateral flagellar proton motor protein B [Yersinia pestis CA88-4125] gi|162353506|gb|ABX87454.1| flagellar motor protein B [Yersinia pestis Angola] gi|165913028|gb|EDR31653.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. IP275] gi|165923064|gb|EDR40215.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. F1991016] gi|165992316|gb|EDR44617.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. E1979001] gi|166206923|gb|EDR51403.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. B42003004] gi|166963073|gb|EDR59094.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050848|gb|EDR62256.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|169749514|gb|ACA67032.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] gi|229690071|gb|EEO82128.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. India 195] gi|229697010|gb|EEO87057.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705556|gb|EEO91566.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A] gi|262360841|gb|ACY57562.1| flagellar motor protein [Yersinia pestis D106004] gi|262364786|gb|ACY61343.1| flagellar motor protein [Yersinia pestis D182038] gi|294353268|gb|ADE63609.1| flagellar motor protein [Yersinia pestis Z176003] Length = 303 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 134/312 (42%), Gaps = 69/312 (22%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-- 88 G+WK+ +ADF +MA F+V+WI+ ++ ++ I N K IF +Q+ Sbjct: 27 GAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFI 77 Query: 89 -PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P +S LS NS+D Sbjct: 78 SIPSKSKSGGGKLS-------NSID----------------------------------- 95 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 GK+ K T +I E P S E+++ K + +++L++ I S Sbjct: 96 ------GKEQAKETKSNLAIEVPE----PEQSLEEVVD-KSRHEMEELSRIIMQITS--- 141 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 A N + E G+ I I D + MF +SS++ P +L ++ I Sbjct: 142 AYNAQSNLQMEVVPQGLRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKII 201 Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTDAS +R+ + +NW LS +RA A++ L+ G+ E R+ +I+ A L +DP Sbjct: 202 ITGHTDASRYRDQLLYNNWNLSGERALMAHKALVNGGLDEGRVLQINAMADQMLLDPTDP 261 Query: 327 MNSANRRIDILV 338 + + NRRI+I+V Sbjct: 262 LAAKNRRIEIMV 273 >gi|157147077|ref|YP_001454396.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895] gi|157084282|gb|ABV13960.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895] Length = 315 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 52/333 (15%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 +N+ + IIK+ + G+WK+ +ADF +MA F+V+WI+ A ++ +K I Sbjct: 2 RNRSKEHTTIIKRSSRKSHDEFHGGAWKVAFADFTLAMMALFMVLWIMGAVTEEERKEIV 61 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 N G+ S+ E + + K G Q Sbjct: 62 SMLN--GE--------------------------SVFEGNSLTPITQKEGQGGQ------ 87 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 L +S+ + K S T +S K TD EK + ++ S + + A Sbjct: 88 -----LSLIDSRHPKTPKPSKTAESSK-----PLTDAEKQVAQQAKQ---TESLDDVNAR 134 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R + ++DLA+ I S A +K E G+ I + D + MF +SS+I P Sbjct: 135 SRNE-IEDLARIIMKITSTYDAQANLK---MEIVPQGLRILVSDDQKREMFQRSSAILTP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305 +L + L I I GHTDA+ FR+ + +NW LS +RA A VL G+ Sbjct: 191 FFKRLLTEFAPELNKIDNKIIITGHTDATRFRDQVLYNNWNLSGERAMQARAVLTTGGLD 250 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +I ++SG A L P++SANRRI+I+V Sbjct: 251 QSKILQVSGMADQMLLDPQHPLSSANRRIEIMV 283 >gi|148554180|ref|YP_001261762.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148499370|gb|ABQ67624.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 334 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 145/344 (42%), Gaps = 79/344 (22%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 +N+ + IIIKK VA ++ G+WK+ YADF+T +MAFFL+MWI+ AT++ +K Sbjct: 10 RNEPEPRPIIIKKIVAEGHGGHHGGAWKVAYADFVTAMMAFFLLMWILGATNEKQRK--- 66 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 I ++ T V K S Sbjct: 67 ----------------------------------GIADYFTPTMVQFKEKSAGS------ 86 Query: 127 LENNIF----------YLSNSQQSEHCKNSLTRDSEKG-KDLCKSTDLEKSINKEENYFL 175 N IF Y + Q+ S+ +D+ G KD S KS ++ L Sbjct: 87 --NGIFGGESVVDKDNYPHRAAQTGSKSISIPKDASGGEKDGAGSA---KSRDRVAFQKL 141 Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 L + K+ A R LAK +S+ V TR G+ I ++DQ + Sbjct: 142 KLLLQAKMAADPR------LAKMMSN-------------VRMVETREGLRIDLVDQADFA 182 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS 294 MF + E +++++ EV + + +RGHTDA P+ + +NW LS RA + Sbjct: 183 MFRSGTDELSSEARALMKQVAEVTNFADNSVIVRGHTDAMPYSKGRTVNNWTLSAARAEA 242 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + L GV+ R ++I G A +A DP + NRR+ I + Sbjct: 243 TRRALSDFGVANTRFARIEGVADREPYVAGDPYDPRNRRMSITL 286 >gi|126463722|ref|YP_001044836.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC 17029] gi|332559779|ref|ZP_08414101.1| MotB2 [Rhodobacter sphaeroides WS8N] gi|126105386|gb|ABN78064.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC 17029] gi|332277491|gb|EGJ22806.1| MotB2 [Rhodobacter sphaeroides WS8N] Length = 278 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 144/339 (42%), Gaps = 70/339 (20%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q N ++IK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Sbjct: 3 GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLAD 62 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQ 125 YFNP N++ + NSV D + T Sbjct: 63 YFNP--------------------TIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGA--- 99 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 +N + + K S ++G D + LE E L S E + Sbjct: 100 ---------ANDRATAELKAS-GETGQEGADAAEQKQLE-----EVEKMLKARSGE---S 141 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP- 244 M ++ L+ + +I+ GLV I I D + P+F + P Sbjct: 142 MTMQRLLRHVVTRITD--EGLV------------------IEIFDLPDVPLFFGDTDQPE 181 Query: 245 --LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 LP+ + + + E+L +T I++ GH + P I W +S RA +L Sbjct: 182 AVLPQ---IARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESE 238 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 G+ +R+ ++SGFA ++ + DPM N R+++++ R Sbjct: 239 GLPGERMQRVSGFADRKI-VTPDPMAVRNNRLEVILLRR 276 >gi|261341475|ref|ZP_05969333.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316] gi|288316271|gb|EFC55209.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 62/309 (20%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WK+ +ADF +MA F+V+WI+ + ++ +K I N + IFD Q Sbjct: 27 GAWKVAFADFTLAMMALFMVLWIMGSVTEEERKEIVSQLN---------GESIFDGQ--- 74 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ++ N V KI T ++ + +H + ++ Sbjct: 75 ----------TLSPITQPNGVGGKIAVTEKR--------------DRGDHKHPQ----KE 106 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + + KS L+ ++ +N ++DLA+ I S A + Sbjct: 107 TPTPAAMAKSASLDDVKSRSQN------------------EIEDLARIIMKITSAYDAQS 148 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +K E G+ I I D + MF +SS+I P +L + L I I G Sbjct: 149 NLK---IEIVPQGLRILITDDQKREMFQRSSAILTPFFKRLLTEFAPALNKIDNKIIITG 205 Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HTDA+ FR+ +N+ LS +RA A +VL +G+ +D++ ++SG A L ++P++S Sbjct: 206 HTDATRFRDQDLYNNYNLSGERAMQARKVLTHAGLDQDKVLQVSGMADQMLLDPANPLSS 265 Query: 330 ANRRIDILV 338 +NRRI+I+V Sbjct: 266 SNRRIEIMV 274 >gi|260779337|ref|ZP_05888229.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] gi|260605501|gb|EEX31796.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] Length = 330 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 136/329 (41%), Gaps = 66/329 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++ K+ +DD + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 7 VVFKRTKTVDDDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLQ---- 62 Query: 75 NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 S +FD+ NP + S S + IDL+ D + Sbjct: 63 -----SASVFDKSYGNPFDTSQSISPIDLAADSSV------------------------- 92 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H +S + +G E + +P ++R Sbjct: 93 ---PSRHDSTHIVSSFFQGDGEGP--------------ETDSLIPG-------TFDTQER 128 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L LAK I + + A V + T G+ I + D MF + S P + Sbjct: 129 LAALAKVIKEAVRQISAQGNVNVTV---TPQGLRIVLQDDYKQHMFGRGGSELTPFFEDL 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + V + I GHTD++ F+ R NW LS RA +A L+ G+ ++R+ Sbjct: 186 LLALAPVFKRVENPLIISGHTDSTRFKGHVERRSNWELSASRANAARHTLVAGGMPDERV 245 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 +++G + L +P +S NRRI++ + Sbjct: 246 LQVTGMSDRALLNGDEPESSENRRIELFI 274 >gi|296534172|ref|ZP_06896663.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265499|gb|EFH11633.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 157 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 1/130 (0%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 ++ + +L E TR G+ I ++D P+F + P +L ++ VLA + I Sbjct: 16 DLARQLLIEQTREGLRIQLVDADGQPVFATGQAAPNQRGRALLLRVATVLARLPYGLDIA 75 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTDA+PFR R NW LS +RA +A +VL+++G++E+R+ ++G A L P++ Sbjct: 76 GHTDAAPFRGGGDRSNWELSAERAGAARRVLIEAGIAEERLRAVAGRADRDLLSPDRPLD 135 Query: 329 SANRRIDILV 338 +ANRR+ ILV Sbjct: 136 AANRRVSILV 145 >gi|120597323|ref|YP_961897.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|120557416|gb|ABM23343.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] Length = 305 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 136/328 (41%), Gaps = 70/328 (21%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70 IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 8 IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P G NP E S + I ID LE N Sbjct: 68 PTGP------------INPFELSQSSSI---ID-----------------------LEGN 89 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + S + E+G + D ++ + +LA + + Sbjct: 90 MSIAPTIIPSHPSPRAGAEGIEEGALIPGQFDTQEQLT--------------VLARQLNR 135 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +Q S +A+NI ++ + GI I I D N MF + S+ P Sbjct: 136 VVQ----------SSSMAENITVTIVPQ----GIRILIHDNVNRFMFTRGSAQMQPYFEE 181 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L +G +L + T + I GHTD++P+ NW LS +RA A +VL + GV D++ Sbjct: 182 LLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQVI 241 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 +++G A I SD +ANRRI+ L+ Sbjct: 242 QVTGMADQVPYITSDTAAAANRRIEALI 269 >gi|264676590|ref|YP_003276496.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|262207102|gb|ACY31200.1| OmpA/MotB [Comamonas testosteroni CNB-2] Length = 355 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 3/152 (1%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL L K+ S ++ N + + E T G++I I+D +N PMFD S++ P Sbjct: 125 QRLHALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYM 184 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306 +L++IG + ++ IS+ GHTDA+P+ N R NW LS DRA ++ + L+ +G+ Sbjct: 185 RDILREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPL 244 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 D+++++ G A L + +P + NRRI I V Sbjct: 245 DKLARVVGMASSDLLLPEEPRAAQNRRITITV 276 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 II K+V ++ G+WKI YADF+T +MAFFL+MW++ +T + I YFN Sbjct: 9 IIIKRVKKTAHAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQGIAAYFN 63 >gi|299531265|ref|ZP_07044675.1| OmpA/MotB [Comamonas testosteroni S44] gi|298720672|gb|EFI61619.1| OmpA/MotB [Comamonas testosteroni S44] Length = 355 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 3/152 (1%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL L K+ S ++ N + + E T G++I I+D +N PMFD S++ P Sbjct: 125 QRLHALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYM 184 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306 +L++IG + ++ IS+ GHTDA+P+ N R NW LS DRA ++ + L+ +G+ Sbjct: 185 RDILREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPL 244 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 D+++++ G A L + +P + NRRI I V Sbjct: 245 DKLARVVGMASSDLLLPEEPRAAQNRRITITV 276 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 II K+V ++ G+WKI YADF+T +MAFFL+MW++ +T + I YFN Sbjct: 9 IIIKRVKKTAHAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQGIAAYFN 63 >gi|186896751|ref|YP_001873863.1| hypothetical protein YPTS_3453 [Yersinia pseudotuberculosis PB1/+] gi|186699777|gb|ACC90406.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 81/312 (25%), Positives = 129/312 (41%), Gaps = 69/312 (22%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-- 88 G+WK+ +ADF +MA F+V+WI+ ++ ++ I N K IF +Q+ Sbjct: 27 GAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFI 77 Query: 89 -PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P +S LS NS+D N Q E N Sbjct: 78 SIPSKSKSGGGKLS-------NSID----------------------GNEQAKETKSNLA 108 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 E K L + D K + +++L++ I S Sbjct: 109 IEVPEPEKSLEEVVD------------------------KSRHEMEELSRIIMQITS--- 141 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 A N + E G+ I I D + MF +SS++ P +L ++ I Sbjct: 142 AYNAQSNLQMEVVPQGLRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKII 201 Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTDAS +R+ + +NW LS +RA A++ L+ G+ E R+ +I+ A L +DP Sbjct: 202 ITGHTDASRYRDQLLYNNWNLSGERALMAHKALVNGGLDEGRVLQINTMADQMLLDPTDP 261 Query: 327 MNSANRRIDILV 338 + + NRRI+I+V Sbjct: 262 LAAKNRRIEIMV 273 >gi|220934494|ref|YP_002513393.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995804|gb|ACL72406.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7] Length = 290 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 1/163 (0%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDK 239 E++ + K+RL+ L + + + A K +L + T G+ I I+D+ N PMFD Sbjct: 110 EELAEQQEKERLEALMQALEEAIERSQALEPFKDQLLLDITPEGLRIQIVDKENRPMFDL 169 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ + +LQ++G ++ ISI GHTDA PF NW LS DRA +A + L Sbjct: 170 GSAQLRGYSTAILQELGGLINQVPNKISITGHTDARPFLRPNYSNWELSSDRANAARRAL 229 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G+ E +I ++ G A L ++P N NRRI I+V R+ Sbjct: 230 VSGGMDEAKIGRVVGLASTVLFDKANPENPINRRISIIVMTRE 272 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 3/60 (5%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71 Q I++KK I ++ G+WKI +ADF T +MAFFL++WI+ TDD+ K AI ++F NP Sbjct: 8 QPIVVKK--IIKKGGHHGGAWKIAFADFATAMMAFFLLLWILGFTDDEQKAAISEFFQNP 65 >gi|152996653|ref|YP_001341488.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150837577|gb|ABR71553.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 301 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 140/326 (42%), Gaps = 72/326 (22%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++I++ I ++ G+WKI ADF +MAFFLV+WI++ + ++IE YF Sbjct: 8 LVIRRVKKIKKGGHHGGAWKIALADFALAMMAFFLVLWIMSVASPEELRSIEGYF----- 62 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 Q+P S+ + N +DL G + K ++L+ L Sbjct: 63 ------------QDPTGASTAG---------YSANPIDL--GGSPAKSAEKKLD-----L 94 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 Q S + G D +S KSIN N +SK L ++K Sbjct: 95 QLPQAGSIDVQSRDKFLGNGPDSAES----KSIN---NMLREEMSKMNTLLSQQKN---- 143 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + E T G+ I+++D + PMF++ S+ +P+ L Sbjct: 144 --------------------MRIEITPLGVRITLLDDPDKPMFERGSARMMPDIENTLLS 183 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + + T I I GHTD+S F DNW LS RA +A +L + GV + RI+++ G Sbjct: 184 MAPIFNKVTNPIVITGHTDSSKFGGGRVDNWDLSALRANAARHILEEGGVEDKRIAQVIG 243 Query: 315 FA----HHRLKIASDPMNSANRRIDI 336 + ++RL D ++ NRRI I Sbjct: 244 LSDTIPYNRL----DTDSAENRRISI 265 >gi|126738556|ref|ZP_01754261.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6] gi|126720355|gb|EBA17061.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6] Length = 278 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 148/340 (43%), Gaps = 79/340 (23%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIKKK ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Y Sbjct: 4 QSNMAPIIIKKKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 63 Query: 69 FNP--------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 F+P G N +F E P+ S D+ N +D Sbjct: 64 FSPSIPLSRVSGGGNGAFQGDSMFTEDIQPQ-SGTGATDM--------NPMD-------- 106 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 +QQ++ + DS+K ++ K +E+ + Sbjct: 107 ----------------AQQAQ--GETGVSDSQKAEEDSKLRAIEEQLQGR--------GG 140 Query: 181 EKILAMKRKKRLQDLAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 E ++++ ++A+ I + +S GL+ + LFET +F+ Sbjct: 141 ESMVSI-------EMARHIITRISDEGLIIE------LFET------------ETAKLFE 175 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 ++ P P +++ + V A +++ GH + P W +S RA +A + Sbjct: 176 DGTAEPTPLFRDLVRMVSRVSATVANEVAVSGHIQSQPVVIAQNPVWGVSHQRADAARTL 235 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L G+ +RI +++G+A +L A +PM+ N R++I++ Sbjct: 236 LESGGMKANRIQRVTGYADRKLA-AQNPMSPRNNRVEIIL 274 >gi|149203099|ref|ZP_01880070.1| OmpA/MotB [Roseovarius sp. TM1035] gi|149143645|gb|EDM31681.1| OmpA/MotB [Roseovarius sp. TM1035] Length = 287 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 62/334 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N + +IIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K I Y Sbjct: 4 QSNAKPVIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQQRKGISDY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P P R+S E + L+ GS + Sbjct: 64 FSP---------------TVPISRTSGGGDGAFGGESVFSQETLLQSGSGASQP------ 102 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 L+ S Q + L +G +L + + L S E + Sbjct: 103 -----LATSSQQVRGEMGLV----EGGNLSADQEADAQAFSTIEAMLTGRSGESM----- 148 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 V+D++++ ++ T G++I I + +F+ + P Sbjct: 149 ------------------VSDDLLRHIVTRVTDEGLVIEIFELPGALLFEPDQTSP---- 186 Query: 249 IVVLQKIGEVLAHSTEVI----SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 +LQ + +LA + ++ ++ GHT A P + W LS R Q L +G+ Sbjct: 187 TRLLQDLSMLLASAANLVINDAALAGHTRARPITLVRNPVWDLSTARVDQFRQRLEDAGL 246 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + RI +I+G A R SDPM+ N R+++++ Sbjct: 247 AAKRIRRIAGHA-DRSPAVSDPMDLRNNRLELIL 279 >gi|91794978|ref|YP_564629.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91716980|gb|ABE56906.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 330 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 139/324 (42%), Gaps = 44/324 (13%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 IIIK+ + ++ G+WK+ +ADF +MA F+V+WI+ D D + I QY + Sbjct: 8 IIIKRGRRSKRSASHGGAWKVAFADFTLAMMALFMVLWIMQIADQDERSQIVQYL----R 63 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 M AS + N D++ I +D + Q+ Sbjct: 64 GEMYAS------------GAMNPFDVAQSSSI----IDFEGSPAIQQA---------IIT 98 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 S E ++ + G++ + E N +P + + ++L Sbjct: 99 SAGSGPERAGPAMHNNIPAGEEEPNAGQ-----GPEFNAMVPGQYDTQAQLVMLARQLNH 153 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + ++ S +ADNI ++ + GI I I D + MF + S+ +L Sbjct: 154 VVQQSS------MADNIAVTLVPQ----GIRILIHDNIDRFMFTRGSAQMQVYFEDLLLA 203 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +G VL T + I GHTD++P+ NW LS RA A +VL GV +++ +++G Sbjct: 204 LGPVLGQVTNAMVISGHTDSTPYVGTEFTNWELSSKRALLARRVLEFGGVKRNQVIQVTG 263 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A I +P +ANRRI++L+ Sbjct: 264 MADQVAYIPQEPAAAANRRIEVLI 287 >gi|262273510|ref|ZP_06051324.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] gi|262222488|gb|EEY73799.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] Length = 340 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 44/307 (14%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ +ADF +MAFF+V+WI+ T + ++ I+ + + +FD +N P Sbjct: 26 AWKVAFADFAIAMMAFFMVLWIMEITSKEEREEIQYRLQQ--STIFESIDNLFDIRNSP- 82 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 ID + +N ++ + T++ NSL Sbjct: 83 ----FPIDFGGEASPFENPINSTLSGTSE----------------------LGNSLHEQV 116 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +G+ + E +++ E +L +L LA + ++ L A Sbjct: 117 PQGEKGNNAGQGENAMSVMEGQYL------------NAAQLSGLAIALKEIVASLDA--- 161 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 ++ + + G+ I I D + MF + S+ P +L + L + I GH Sbjct: 162 MENIHLDVVPQGLRIQIQDSKRNVMFQRGSAQMTPFFEDILYALSPKLGKIQNRLIISGH 221 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 TD++ F A NW LS DRA A QV++ SG+ + ++ ++ A L +DP + N Sbjct: 222 TDSTVFSTQAYSNWELSGDRALKARQVMVGSGLPQQQVLQVVAMADRTLLDEADPQSGKN 281 Query: 332 RRIDILV 338 RRI+I+V Sbjct: 282 RRIEIMV 288 >gi|153948417|ref|YP_001399654.1| hypothetical protein YpsIP31758_0662 [Yersinia pseudotuberculosis IP 31758] gi|152959912|gb|ABS47373.1| flagellar motor protein B [Yersinia pseudotuberculosis IP 31758] Length = 303 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 69/312 (22%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-- 88 G+WK+ +ADF +MA F+V+WI+ ++ ++ I N K IF +Q+ Sbjct: 27 GAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFI 77 Query: 89 -PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P +S LS NS+D Sbjct: 78 SIPSKSKSGGGKLS-------NSID----------------------------------- 95 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 GK+ K T +I E P S E+++ K + +++L++ I S Sbjct: 96 ------GKEQAKETKSNLAIEVPE----PEQSLEEVVD-KSRNEMEELSRIIMQITS--- 141 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 A N + E G+ I I D MF +SS++ P +L ++ I Sbjct: 142 AYNAQSNLQMEVVPQGLRILIQDDLQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKII 201 Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTDAS +R+ + +NW LS +RA A++ L+ G+ + R+ +I+ A L +DP Sbjct: 202 ITGHTDASRYRDQLLYNNWNLSGERALMAHKALVSGGLDKGRVLQINAMADQMLLDPTDP 261 Query: 327 MNSANRRIDILV 338 + + NRRI+I+V Sbjct: 262 LAAKNRRIEIMV 273 >gi|78485775|ref|YP_391700.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78364061|gb|ABB42026.1| Flagellar motor protein MotB [Thiomicrospira crunogena XCL-2] Length = 296 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245 + K +++DL ++I +S N +K L E T G+ + ++D R PMF +P Sbjct: 110 QEKAQMEDLKRQIEQKISENPITNELKNQLKIEVTPNGLQVQVLDDRKRPMFGSGVDLPK 169 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGV 304 +L+++G VLA + ISI GHTD+S + N NW LS DRA +A ++L+ GV Sbjct: 170 DYAAKLLKEVGSVLAQTNNRISIAGHTDSSGYHSNAEYTNWELSADRANAARRLLLDGGV 229 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E +I+++ G + +P N NRRI I+V +++ Sbjct: 230 GEKKIAQVVGLSDTVPFDKENPYNPRNRRISIIVLNKEA 268 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +Q IIIK+ + G+WK+ +ADFMT MAFFL++WI++ +D+ KA+ +YF Sbjct: 4 EQSIIIKRLTKCPHCAHG-GAWKVAFADFMTAAMAFFLMLWILSGVNDEEMKAMAEYFR- 61 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 ++ AS + +SS + ID+ + K S++ + G +++ Q Sbjct: 62 -DPTVIEASPQVLVPSKEAGQSSDSMIDMGGFKDTPKGSIENEDGEAKAQEKAQ 114 >gi|221069302|ref|ZP_03545407.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] gi|220714325|gb|EED69693.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] Length = 353 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 3/152 (1%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL L K+ + ++ N + + E T G++I I+D +N PMFD S++ P Sbjct: 125 QRLHALKAKVDTMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYM 184 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306 +L++IG + ++ IS+ GHTDA+P+ N R NW LS DRA ++ + L+ +G+ Sbjct: 185 RDILREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVSAGMPL 244 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 D+++++ G + L + +P + NRRI I V Sbjct: 245 DKLARVVGMSSSDLLLPEEPRAAQNRRITITV 276 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 II K+V ++ G+WKI YADF+T +MAFFL+MW++ +T + I YFN Sbjct: 9 IIIKRVKKTAHAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQGIAAYFN 63 >gi|221640801|ref|YP_002527063.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131] gi|221161582|gb|ACM02562.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131] Length = 285 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 80/347 (23%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G Q N ++IK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + + Sbjct: 7 GMAGQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQR-- 64 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV-------DLKIGS 117 KG+ D NP N++ + NSV G+ Sbjct: 65 ----------------KGLADYFNPT--IPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGA 106 Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 N + +R + + ++G D + LE+ Sbjct: 107 ANDRATAER---------------KARGEM---GQEGADAAEQKQLEEV----------- 137 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 EK+L + + + +++ V+ T G++I I D + P+F Sbjct: 138 ---EKMLKARSGE--------------SMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLF 180 Query: 238 DKSSSIP---LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 + P LP+ + + + E+L +T I++ GH + P I W +S RA Sbjct: 181 FGDTDQPEAVLPQ---IARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQR 237 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +L G+ ++R+ ++SGFA ++ + DPM N R+++++ R Sbjct: 238 MRGLLESEGLPDERMQRVSGFADRKI-VTPDPMAVRNNRLEVILLRR 283 >gi|152980289|ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacterium sp. Marseille] gi|151280366|gb|ABR88776.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille] Length = 328 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 92/158 (58%), Gaps = 4/158 (2%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R K L++ +K T+ GL +L + T G+ I I+D++N PMF + + P Sbjct: 125 RLKALKERIEKAIDTIPGL--QQFKNQLLIDITTEGLRIQIVDEKNRPMFALARAELQPY 182 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVS 305 T V+L +I ++L IS+ GHTDA+P+ + + NW LS DRA ++ + L+ G++ Sbjct: 183 TKVILHEIAKILNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGMA 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E+++ ++ G + L +SDP+N NRRI I+V +++ Sbjct: 243 ENKVLRVVGLSSAVLFDSSDPLNPVNRRISIIVLNKKA 280 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 II K++ ++ G+WKI YADF+T +MAFFL+MW++ +T + I +F+ Sbjct: 9 IIIKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGDLQGIADFFS 63 >gi|307293778|ref|ZP_07573622.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] gi|306879929|gb|EFN11146.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] Length = 351 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 62/334 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N+ + II+KK + ++ G+WK+ YADF+T +MAFFL+MW++ AT + + Sbjct: 9 NEPEPRPIIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR----- 63 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY--Q 125 KG+ D + T V +K GS + Sbjct: 64 -------------KGLAD-------------------YFTPTLVQVKEGSAGSNGMFGGD 91 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + Y + Q + ++ RD+ KD K+ + + KE Sbjct: 92 SMTAKENYPTTGGQG-NLAITIPRDASGTKDQGG-----KATKAADRAKFESIKKELEAR 145 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 M R+ + L K V F TR G+ I +ID+ + MF + L Sbjct: 146 MARRHGINKLRKN----------------VRFTETREGLRIDLIDEADFAMFAMGTDRLL 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGV 304 P+ ++ ++ + + + +RGHTD P+ + +NW LS RA + + L SG+ Sbjct: 190 PQARELVDEVAKTIRTMPNPLIVRGHTDGLPYSSGQTMNNWMLSSARAEATRKALAASGI 249 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DR ++I G A D + NRR+ I++ Sbjct: 250 GNDRFARIEGVADREPFAKGDVYDPRNRRMSIIL 283 >gi|146284108|ref|YP_001174261.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] gi|145572313|gb|ABP81419.1| chemotaxis protein MotB [Pseudomonas stutzeri A1501] Length = 336 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMF S+ P +L + E +A ISI GHTDA Sbjct: 143 ILFEITQDGLRIQIMDAENRPMFALGSAQLQPYFEDILLALVETIAAVPNKISISGHTDA 202 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 PF NW LS RA +A + L+ G E++I+++ G+A L DP N NRR Sbjct: 203 KPFSGRGDFGNWELSASRANAARRTLVYGGYPEEQIARVVGYASSALFDRKDPFNPVNRR 262 Query: 334 IDILV 338 IDILV Sbjct: 263 IDILV 267 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 7/112 (6%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +N Q II+K KKVA ++ G+WKI +ADF T +MAFFLVMW++++ + KK I Sbjct: 2 DNTQPIIVKRVKKVAGG---HHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISG 58 Query: 68 YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 YF +P G +AS + D P S ++ ++ ++ +D + T Sbjct: 59 YFQDPIGFT-ESASPHVIDLGGTPTPSPDRTLNPELEPAQSEAQIDAQQAET 109 >gi|153836044|ref|ZP_01988711.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810] gi|149750798|gb|EDM61543.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810] Length = 330 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 67/335 (20%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + K D P+ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + S +FD+ NP + S S + IDL+ D + Sbjct: 61 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + S H +S + G ++ N +P Sbjct: 93 ---------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPG-------T 122 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +++L LAK I + + N V T G+ I + D MF + + Sbjct: 123 FDTQEQLAALAKVIEEMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 P +L + + T + I GHTDA PF R + NW LS RA A + L++ G Sbjct: 180 PFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGG 239 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +DR+ +++G + L +P +S NRRI++ + Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 274 >gi|28901412|ref|NP_801067.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362966|ref|ZP_05775835.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030] gi|260880253|ref|ZP_05892608.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034] gi|260895370|ref|ZP_05903866.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466] gi|1346409|sp|Q03478|LAFU_VIBPA RecName: Full=Chemotaxis protein LafU gi|677910|gb|AAA62355.1| LafU [Vibrio parahaemolyticus] gi|1518954|gb|AAB07358.1| lateral flagellar MotB [Vibrio parahaemolyticus] gi|28809959|dbj|BAC62900.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085707|gb|EFO35402.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466] gi|308092138|gb|EFO41833.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034] gi|308111945|gb|EFO49485.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030] Length = 330 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 67/335 (20%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + K D P+ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + S +FD+ NP + S S + IDL+ D + Sbjct: 61 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + S H +S + G ++ N +P Sbjct: 93 ---------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPG-------T 122 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +++L LAK I + + N V T G+ I + D MF + + Sbjct: 123 FDTQEQLAALAKVIEEMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 P +L + + T + I GHTDA PF R + NW LS RA A + L++ G Sbjct: 180 PFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGG 239 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +DR+ +++G + L +P +S NRRI++ + Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 274 >gi|260429438|ref|ZP_05783415.1| OmpA/MotB [Citreicella sp. SE45] gi|260420061|gb|EEX13314.1| OmpA/MotB [Citreicella sp. SE45] Length = 291 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 63/328 (19%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 +IIK+K ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Y Sbjct: 17 VIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY------ 70 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 F R S E + +V ++G+ Sbjct: 71 ---------FSPTIAVSRMSGGGDGTLGGESVFTEAVLPRVGT----------------- 104 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + + +N S+ G+ + K E P S E + K L+D Sbjct: 105 GATSLNPMAQNRARGSSDPGQ--------ARETGKAEE---PGASDEDL------KALED 147 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L + ++ DN+++ ++ T G+++ + + + +FD++ + P+P +L+ Sbjct: 148 LL--MGRGGETMIDDNLMRHIVTRVTDEGLVVELFETEDARLFDETGA-PMP----LLRD 200 Query: 255 IGEVLAHSTEVI----SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRI 309 + V+A + ++ ++ GHT A P +ARD +W +S RA Q+L+ G+ RI Sbjct: 201 LAGVIARVSRLVTNPLAVEGHTTAFPI-VLARDPSWDVSTRRADDFRQLLLAGGLDRKRI 259 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDIL 337 +++ A R S+PM++ N R++++ Sbjct: 260 DRVTAHA-DREPSQSNPMDARNNRLEVI 286 >gi|218461676|ref|ZP_03501767.1| flagellar motor protein MotB [Rhizobium etli Kim 5] Length = 75 Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/73 (54%), Positives = 57/73 (78%) Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 +IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ ++P Sbjct: 1 AIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPAEP 60 Query: 327 MNSANRRIDILVE 339 N+ANRRI+ILV+ Sbjct: 61 FNAANRRIEILVQ 73 >gi|328469346|gb|EGF40292.1| chemotaxis LafU protein [Vibrio parahaemolyticus 10329] Length = 330 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 67/335 (20%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + K D P+ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + S +FD+ NP + S S + IDL+ D + Sbjct: 61 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + S H +S + G ++ N +P Sbjct: 93 ---------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPG-------T 122 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +++L LAK I + + N V T G+ I + D MF + + Sbjct: 123 FDTQEQLAALAKVIEEMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 P +L + + T + I GHTDA PF R + NW LS RA A + L++ G Sbjct: 180 PFFEDLLLALAPLFERVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGG 239 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +DR+ +++G + L +P +S NRRI++ + Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 274 >gi|77464880|ref|YP_354384.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1] gi|77389298|gb|ABA80483.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1] Length = 278 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 70/339 (20%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q N ++IK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K Sbjct: 3 GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---- 58 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQ 125 G+ D NP N++ + NSV D + T Sbjct: 59 --------------GLADYFNP--TIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGA--- 99 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 +N + + K S ++G D + LE+ EK+L Sbjct: 100 ---------ANDRATAELKAS-GEMGQEGADAAEQKQLEEV--------------EKMLK 135 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP- 244 + + + +++ V+ T G++I I D + P+F + P Sbjct: 136 ARSGE--------------SMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGDTDQPE 181 Query: 245 --LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 LP+ + + + E+L +T I++ GH + P I W +S RA +L Sbjct: 182 AVLPQ---IARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESE 238 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 G+ +R+ ++SGFA ++ + DPM N R+++++ R Sbjct: 239 GLPGERMQRVSGFADRKI-VTPDPMAVRNNRLEVILLRR 276 >gi|160896052|ref|YP_001561634.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1] gi|160361636|gb|ABX33249.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1] Length = 345 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 2/123 (1%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ I I+D++N PMFD S++ P +L+++G LA + IS+ GHTDA+P+ Sbjct: 154 DVTPDGLQIQIVDEQNRPMFDSGSAMVKPYMRDILREVGAALAGAENRISLSGHTDAAPY 213 Query: 278 RNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 N R NW LS DRA ++ + L+ +G+ +++++I+G A L + DP NRRI Sbjct: 214 GNADRGYSNWELSSDRANASRRELVAAGMPLNQLARITGLASSDLLLPDDPRAPQNRRIT 273 Query: 336 ILV 338 I V Sbjct: 274 ITV 276 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ P+ G+WKI YADF+T +MAFFL+MW++ +T + I YF+ Sbjct: 7 QPIIIKRVKKTAHAPHG-GAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFSSP 65 Query: 73 GKNLMTASKG 82 K M G Sbjct: 66 LKVAMAGGDG 75 >gi|146294532|ref|YP_001184956.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|145566222|gb|ABP77157.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 305 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 70/328 (21%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70 IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 8 IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P G NP E S + I ID LE N Sbjct: 68 PTGP------------INPFELSQSSSI---ID-----------------------LEGN 89 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + S + E+G + D ++ + +LA + + Sbjct: 90 MSIAPAIIPSHPSPRAGAEGIEEGALIPGQFDTQEQLT--------------VLARQLNR 135 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +Q SS+++ +NI ++ + R ILI D N MF + S+ P Sbjct: 136 VVQ------SSSMA----ENITVTIVPQGIR--ILIH--DNVNRFMFTRGSAQMQPYFEE 181 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L +G +L + T + I GHTD++P+ NW LS +RA A +VL + GV D++ Sbjct: 182 LLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQVI 241 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 +++G A I SD +ANRRI+ L+ Sbjct: 242 QVTGMADQVPYITSDTAAAANRRIEALI 269 >gi|315179650|gb|ADT86564.1| lateral flagellar motor protein B [Vibrio furnissii NCTC 11218] Length = 330 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 135/331 (40%), Gaps = 60/331 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ D P++ G+WK+ ADFM LMA FLV+W++ + + +KAI + Sbjct: 2 QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S +FD RS N D S + + +DL S+ Sbjct: 62 H---------SASVFD------RSYGNPFDTSQ----SISPIDLASESS----------- 91 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + H S + G E + +P + Sbjct: 92 ----VPSKHDANHTVTSFYNGNGNGP--------------ESDAIIPG-------NFDTQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK I + + + A V T G+ I + D MF + + P Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V + I GHTD++ F R R NW LS +RA A Q L+ G+ E Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKQRFSHRTNWELSANRANIARQTLVAGGMPEQ 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 R+ +++G + L +P S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFV 274 >gi|124268058|ref|YP_001022062.1| chemotaxis signal transduction protein CheY [Methylibium petroleiphilum PM1] gi|124260833|gb|ABM95827.1| Chemotaxis signal transduction protein CheY [Methylibium petroleiphilum PM1] Length = 320 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 7/196 (3%) Query: 154 GKDLCKSTDLEKSINKE---ENYFLPPLSKEKIL-AMKRKKRLQDLAKKISSTLSGLVAD 209 G+DL +ST K + E ++Y L L + A + L+ L ++ S L+ Sbjct: 89 GQDLTRSTGQVKRGDVEAERKSYTLQALKATRAQQASAEAESLKMLKGRVESKLANDPRF 148 Query: 210 NIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 N +K + F+ T G+ I I+D++N PMF S++ P +L+ IG VLA +++ Sbjct: 149 NELKAQIRFDMTADGLRIQIVDEQNRPMFATGSAVVQPYMRELLRTIGGVLAEVPNKLTL 208 Query: 269 RGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 GHTD + F A NW LS DRA ++ + L+ G++++++ ++ G A L P Sbjct: 209 EGHTDTAAFSAGAGGYSNWELSADRANASRRELIAGGLADEKVLRVQGLAASSLFDREQP 268 Query: 327 MNSANRRIDILVEDRQ 342 +N NRRI I+V +R+ Sbjct: 269 LNPVNRRISIIVMNRE 284 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 II KK+ + G+WKI YADF+T +MAFFL+MW++ +T + +K I+ YFN Sbjct: 11 IIVKKIKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDRKGIQDYFN 65 >gi|323492326|ref|ZP_08097479.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546] gi|323313373|gb|EGA66484.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546] Length = 330 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/329 (24%), Positives = 133/329 (40%), Gaps = 66/329 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++ K+ D P++ G+WK+ +ADFM LMA FLV+W++ D + +KAI + + Sbjct: 7 VVFKRSKKHDHEPHHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLH---- 62 Query: 75 NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 S +FD+ NP + S S + IDL+ D + Sbjct: 63 -----SSSVFDKSYGNPFDTSQSISPIDLASDSSV------------------------- 92 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H NS G E + +P ++R Sbjct: 93 ---PSRHDSTHTVNSFFDGDGDGP--------------ETDSLIPG-------TFDTQER 128 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L LAK I + A V T G+ + + D MF + + P + Sbjct: 129 LAALAKVIEEAVRQSSAQGNVN---VTVTPQGLRVVLQDDYKQHMFSRGGAELTPFFEDL 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + V I I GHTD++ F++ + NW LS RA A L+ G+ ++R+ Sbjct: 186 LLALAPVFKRVVNPIIISGHTDSTQFKHRFKQASNWELSASRANVARVTLVSGGMPDERV 245 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 +++G + L DP +S NRRI++ V Sbjct: 246 LQVTGMSDRALLNNDDPESSENRRIELFV 274 >gi|260767946|ref|ZP_05876880.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] gi|260615976|gb|EEX41161.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] Length = 330 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 135/331 (40%), Gaps = 60/331 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ D P++ G+WK+ ADFM LMA FLV+W++ + + +KAI + Sbjct: 2 QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S +FD RS N D S + + +DL S+ Sbjct: 62 H---------SASVFD------RSYGNPFDTSQ----SISPIDLASESS----------- 91 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + H S + G E + +P + Sbjct: 92 ----VPSKHDANHTVTSFYNGNGNGP--------------ESDAIIPG-------NFDTQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK I + + + A V T G+ I + D MF + + P Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V + I GHTD++ F R R NW LS +RA A Q L+ G+ E Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKRRFSHRTNWELSANRANIARQTLVAGGMPEQ 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 R+ +++G + L +P S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFV 274 >gi|34498443|ref|NP_902658.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472] gi|34104298|gb|AAQ60657.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472] Length = 328 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 71/342 (20%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G KN+ +IKK + + G+WK+ +ADF+ LM FLV+W++ A D + Sbjct: 3 GLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQEN--- 59 Query: 65 IEQYFNPFGKNLMTASKG--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 ++Q G + + G I NPP I ++ + + GS K Sbjct: 60 LQQLLTTSGGSPLLQGNGKQIDHMGNPP------------GTLIPRDPIPGQAGSQAASK 107 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 R +S R SE+ + +S D E + K Sbjct: 108 SAVR------------------DSDKRASEQPELPRRSYDSEADLRK------------- 136 Query: 183 ILAMKRKKRLQDLAKK--ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 LA + L ++++K +SS L ++ T G+ +++ D MF++ Sbjct: 137 -LAAQ----LSEMSQKAGLSSNLQTVI------------TPYGLRVTLHDTDQQGMFERG 179 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI----ARDNWRLSLDRAYSAY 296 S+I P +LQ+IG +L + + GHTDA+ + A NW LS +RA +A Sbjct: 180 SAIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAAR 239 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +M+ G++ D + ++ G A P+ + NRRI++LV Sbjct: 240 LHMMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLV 281 >gi|91223190|ref|ZP_01258456.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01] gi|269967120|ref|ZP_06181187.1| chemotaxis LafU protein [Vibrio alginolyticus 40B] gi|91192003|gb|EAS78266.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01] gi|269828257|gb|EEZ82524.1| chemotaxis LafU protein [Vibrio alginolyticus 40B] Length = 331 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 66/335 (19%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + KV D ++ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKVYSHDESSHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 61 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + S +FD+ NP + S S + IDL+ D Sbjct: 62 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQD---------------------- 90 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 +S S+H N + KG E + +P Sbjct: 91 ----------SSVPSKHNSNHVVSSYFKGD----------GDGPEIDSLIPG-------N 123 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +++L LAK I + + N V T G+ I + D MF + + Sbjct: 124 FDTQEQLAALAKVIEQMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 180 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 P +L + V + I GHTDA PF R + NW LS RA A L++ G Sbjct: 181 PFFEDLLLALAPVFHRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGG 240 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +DR+ +++G + L +P +S NRRI++ V Sbjct: 241 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFV 275 >gi|304413521|ref|ZP_07394994.1| flagellar motor component [Candidatus Regiella insecticola LSR1] gi|304284364|gb|EFL92757.1| flagellar motor component [Candidatus Regiella insecticola LSR1] Length = 326 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 58/324 (17%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 IIK+ + G+WK+ +ADF +MA F+V+WI+ A ++ + I + + Sbjct: 12 IIKRSAKKHHAGVHTGAWKVAFADFTLAMMALFMVLWIVGAVSEEERHEIMSHIH----- 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 IF S+Q+ + + + KN D K ++ L N Sbjct: 67 ----GNTIF--------SNQSFLSIPLK---NKNGAD---------KNFEMLHTNK---- 98 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 TRDS K + N+ + F P K + K +QDL Sbjct: 99 ------------TRDSMKER---------ARENRLKEPFKEPDQIRKEVVDKSATEMQDL 137 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++ + L A N + E G+ I I D + MF SS++ P +L ++ Sbjct: 138 SRMV---LEISKAHNAQSNLNIEMVPQGLRILIQDDKKREMFPLSSALLTPFFTRLLAEL 194 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + I GHTD + +R+ +NW LS +RA +A + L + G+ + I +I+ Sbjct: 195 APVLNDLNNKVIITGHTDGARYRDQELYNNWNLSGERAMAARRALERGGLDDAHILQINA 254 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A L DP+ +ANRRI+I+V Sbjct: 255 MADQMLLDEKDPLGAANRRIEIMV 278 >gi|254228819|ref|ZP_04922242.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262396462|ref|YP_003288315.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] gi|151938766|gb|EDN57601.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262340056|gb|ACY53850.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] Length = 330 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 137/335 (40%), Gaps = 67/335 (20%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + K D P+ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHSHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + S +FD+ NP + S S + IDL+ D + Sbjct: 61 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------- 92 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + S H +S R G ++ + +P Sbjct: 93 ---------PSKHNSNHVVSSYFRGDGDGPEI--------------DSLIPG-------N 122 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +++L LAK I + + N V T G+ I + D MF + + Sbjct: 123 FDTQEQLAALAKVIERMTAQI---NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 179 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 P +L + V + I GHTDA PF R + NW LS RA A L++ G Sbjct: 180 PFFEDLLLALAPVFQRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGG 239 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +DR+ +++G + L +P +S NRRI++ V Sbjct: 240 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFV 274 >gi|163800113|ref|ZP_02194014.1| chemotaxis LafU protein [Vibrio sp. AND4] gi|159175556|gb|EDP60350.1| chemotaxis LafU protein [Vibrio sp. AND4] Length = 330 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 141/329 (42%), Gaps = 66/329 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++ K+ A D ++ G+WK+ +ADFM LMA FLV+W++ D + +KAI + + Sbjct: 7 VVFKRAKAHDHDESHGGAWKVAFADFMIALMALFLVLWVMQVVDKEDRKAIVAHLH---- 62 Query: 75 NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 S +FD+ NP + S S + IDL+ D + Sbjct: 63 -----SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------------- 92 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H +S + G ++ + +P +++ Sbjct: 93 ---PSQHNSNHVVSSFFQGDGDGPEM--------------DSLIPG-------NFDTQEQ 128 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L LAK I + + A + V + T G+ I + D MF++ + P + Sbjct: 129 LALLAKVIDKVVGQISAQDNVNVTI---TPQGLRIVLQDDYMQHMFNRGGAELTPFFEDL 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + V + I GHTD++PF+ + R NW LS RA A L++ G+ +DR+ Sbjct: 186 LLALAPVFERINNPLIISGHTDSTPFKQRVGRKSNWALSASRADVARNTLVEGGMPDDRV 245 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 +++G + L +P +S NRRI++ + Sbjct: 246 MQVTGMSDRALLNREEPDSSENRRIELFI 274 >gi|332531608|ref|ZP_08407505.1| OmpA/MotB [Hylemonella gracilis ATCC 19624] gi|332038971|gb|EGI75400.1| OmpA/MotB [Hylemonella gracilis ATCC 19624] Length = 318 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 A + +RL L+ KIS+ +S + + E+T G+ I I+D++ PMF ++ Sbjct: 115 ARRDAQRLAALSAKISAAISNNAQLRRFSRQIQLESTPDGLKIQIVDEQGRPMFTTGNAA 174 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMK 301 P +L++IG L IS+ GHTD + + N R NW LS DRA +A + L+ Sbjct: 175 VQPYMRDILREIGAALNGVENKISLDGHTDVTQYGNQGRSYSNWELSADRANAARRELVA 234 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV-----EDRQ 342 +G+ ED++ +++G A L + +P ANRRI I+V E+RQ Sbjct: 235 AGMPEDKLLRVTGLAASNLLVPDNPTAPANRRISIMVLTKEAEERQ 280 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 27/38 (71%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++ +T K + YF Sbjct: 27 AWKIAYADFVTAMMAFFLLMWLLGSTSKGDLKGLADYF 64 >gi|308050006|ref|YP_003913572.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307632196|gb|ADN76498.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 328 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 46/309 (14%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WK+ +ADF +MA FLV+W++ D + +I Q G+ L+ +S G + N P Sbjct: 23 GAWKVAFADFTLAMMALFLVLWLVQVADKQERASIVQALT--GETLLESSSGGSWDSNRP 80 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 L +D ++ + T ++ + N I Sbjct: 81 H-------ILELDGTLSMTEAVMPATGTGVQRAGPAMVNQI-----------------PK 116 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVAD 209 E+G + L LP ++ + +L+ LA++ ++ +AD Sbjct: 117 GERGASAGQGDTL--------TSLLPG-------PVETQAQLEVLAREAGKIIAQSEIAD 161 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N+ + G+ I I D MF + SS P +L + +L + + Sbjct: 162 NVA----IQVVPQGLKILIRDNLQQFMFARGSSRMTPYFEDLLFSLAPLLKQVQNPLMVS 217 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTD++ FR+ NW LS +RA A + L GV ++ + G A SDP +S Sbjct: 218 GHTDSTHFRSNDSSNWELSSERALEARRALEFGGVGRNQFFNVVGMADQVPVEPSDPRSS 277 Query: 330 ANRRIDILV 338 ANRRI+++V Sbjct: 278 ANRRIELMV 286 >gi|254706492|ref|ZP_05168320.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] Length = 284 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 71/119 (59%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 165 GVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATY 224 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 DN RLS RA AY +L++ G+ E R+ ++ G+A K +DP + NRRIDI ++ + Sbjct: 225 DNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 283 >gi|254497974|ref|ZP_05110737.1| flagellar motor protein MotB [Legionella drancourtii LLAP12] gi|254352751|gb|EET11523.1| flagellar motor protein MotB [Legionella drancourtii LLAP12] Length = 293 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L++L +I+ ++ + N +K +L E G+ I +ID + PMFD S P+ Sbjct: 130 QKLEELKSEINLSIQNDPSLNGLKDRMLMEVVHDGLRIQLIDNQKNPMFDVGSEKLNPQF 189 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVS 305 + KI ++L ++I+G+TDA P+ N + NW LS RA +A + L+K+G+ Sbjct: 190 EPIFTKISKLLNGVPNKVTIQGYTDAHPYHNPDELEYTNWELSTQRANAARRALIKAGLD 249 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E+++ K+SGF+ DP N+ NRRI I+V Sbjct: 250 ENKVMKVSGFSSTMPLDKKDPFNAINRRISIIV 282 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + +E Q IIIKK V ++ GSWKI YADF+T +MAFFL+MW+I + + Sbjct: 1 MSENENSAKEKSQPIIIKK-VKKHGHAHHGGSWKIAYADFVTAMMAFFLLMWLIASLNKA 59 Query: 61 TKKAIEQYF 69 ++ I +YF Sbjct: 60 QREGIAEYF 68 >gi|261313945|ref|ZP_05953142.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] gi|261302971|gb|EEY06468.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] Length = 283 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 71/119 (59%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 164 GVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATY 223 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 DN RLS RA AY +L++ G+ E R+ ++ G+A K +DP + NRRIDI ++ + Sbjct: 224 DNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 282 >gi|83593178|ref|YP_426930.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|83576092|gb|ABC22643.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 360 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 7/168 (4%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-----DNIVKGVLFETTRTGILISIIDQRNTP 235 +K LA +KR Q+ K ++ L + + +L + T G+ I +ID+ Sbjct: 151 DKQLAAAEEKRQQEEFNKTATELRQAIQAVPSLQALSNSLLIDNTPEGLRIQLIDREGLS 210 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYS 294 MF SS LP T +L + + +A ISI GHTDA P+ + + NW LS DRA + Sbjct: 211 MFPTGSSALLPHTRDLLALVAKAVADVPNKISISGHTDAPPYSDPSGYGNWELSADRALA 270 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI-LVEDR 341 + +VL+ +G+ EDR+ ++ G A +A DP +NRRI I L+ DR Sbjct: 271 SRRVLLANGLKEDRVDRVVGKAETEPLLADDPKAPSNRRIAITLLRDR 318 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ IIIK+ + ++ G+WK+ YADF+T +MAFFL++W++N+ ++ I YF P Sbjct: 3 DQPIIIKR-IKKGGHAHHGGAWKLAYADFVTAMMAFFLLLWLLNSVTEEQLVGISNYFAP 61 >gi|74317262|ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus denitrificans ATCC 25259] gi|74056757|gb|AAZ97197.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans ATCC 25259] Length = 319 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D++N PMF+ +S+ P T V+L +I +VL IS+ GHTDA Sbjct: 149 LLIDITSEGLRIQIVDEQNRPMFNLASAELQPYTKVILHEIAQVLNDVENRISLSGHTDA 208 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ N R NW LS DRA ++ + L+ G+SE ++ ++ G A + P + NR Sbjct: 209 RPYANGERGYSNWELSADRANASRRELIVGGMSEAKMLRVVGLASSVPFTQAKPFDPVNR 268 Query: 333 RIDILV 338 RI I+V Sbjct: 269 RISIIV 274 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 II K++ ++ G+WKI YADF+T +MAFFL+MW++ +T + I +YF Sbjct: 8 IIVKRIKKTSGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTRGDLEGIAEYF 61 >gi|257094100|ref|YP_003167741.1| flagellar motor protein MotB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046624|gb|ACV35812.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 319 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D++N PMFD SS+ P T V+L++IG+ L +S+ GHTDA Sbjct: 153 LLIDITSEGLRIQIVDEQNRPMFDTSSAELKPHTRVILREIGKALNAVHNKLSLSGHTDA 212 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + + + NW LS +RA ++ + L+ G+ E ++ ++ G A L +DP++S NR Sbjct: 213 AQYGGGDKGFSNWELSANRANASRRELIAGGMDEHKVLRVVGLASTVLFDKNDPLSSINR 272 Query: 333 RIDILVEDRQ 342 RI I+V +++ Sbjct: 273 RISIVVLNKR 282 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 6/61 (9%) Query: 15 IIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71 I+IK KKVA ++ G+WKI YADF+T +MAFFL+MW++ +T K I +F NP Sbjct: 7 IVIKRIKKVA---GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTASGDLKGIADFFQNP 63 Query: 72 F 72 Sbjct: 64 L 64 >gi|54307286|ref|YP_128306.1| chemotaxis LafU protein [Photobacterium profundum SS9] gi|46911706|emb|CAG18504.1| Hypothetical chemotaxis LafU protein [Photobacterium profundum SS9] Length = 330 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/330 (26%), Positives = 137/330 (41%), Gaps = 55/330 (16%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 II+KK+ ++ G+WK+ +ADF +MAFF+V+W++ T + + IEQ Sbjct: 6 HIIIVKKRARRHHDEHHGGAWKVAFADFAIAMMAFFMVLWLMGITTQEERIEIEQ----- 60 Query: 73 GKNLMTAS--KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 L TAS IF+ N P + ID + +N ++ STN K++ Sbjct: 61 --RLQTASIFDNIFEITNSP-----HPIDFDGNASPFENPIN---SSTNSKRKRD----- 105 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR-- 188 S+ + + +G D + K +N +LA K Sbjct: 106 --------------TSVAQQTPQGDDKASAGRGPK-LNS-------------MLAGKHLS 137 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +L LAK + L A N ++ E G+ I I D + MF + P Sbjct: 138 TAQLTILAKGLKEMAEALSASN---NIVLEIVPQGLRILIQDDDDHFMFQRGGIEMTPFF 194 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + VL + I GHTD+ PF NW LS RA A QVL+ SG+ Sbjct: 195 EDMLYNLAPVLGQIKNRMVISGHTDSIPFHRRDYSNWDLSGSRALKARQVLVDSGLPVAN 254 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338 I +++ A P + NRRI+++V Sbjct: 255 ILQVAAMAARMPVNKQYPKSGKNRRIEMMV 284 >gi|156976178|ref|YP_001447084.1| flagellar motor protein [Vibrio harveyi ATCC BAA-1116] gi|156527772|gb|ABU72857.1| hypothetical protein VIBHAR_04949 [Vibrio harveyi ATCC BAA-1116] Length = 330 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 66/329 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++ K+ A + + G+WK+ +ADFM LMA FLV+W++ D + +KAI + + Sbjct: 7 VVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLH---- 62 Query: 75 NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 S +FD+ NP + S S + IDL+ D + Sbjct: 63 -----SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------------- 92 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H +S + G ++ + +P +++ Sbjct: 93 ---PSKHNSNHVVSSFFQGDGDGPEI--------------DSLIPG-------NFDTQEQ 128 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L LAK I + + A V + T G+ I + D MF + + P + Sbjct: 129 LALLAKVIDEVVGQISAQGNVNVTI---TPQGLRIVLQDDYKQHMFSRGGAELTPFFEDL 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + V + + I GHTD++PF R + NW LS RA A L++ G+ +DR+ Sbjct: 186 LLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGMPDDRV 245 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 +++G + L +P +S NRRI++ + Sbjct: 246 MQVTGMSDRALLNPEEPDSSENRRIELFI 274 >gi|269960142|ref|ZP_06174518.1| chemotaxis LafU protein [Vibrio harveyi 1DA3] gi|269835113|gb|EEZ89196.1| chemotaxis LafU protein [Vibrio harveyi 1DA3] Length = 330 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 66/334 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + G ++ + +P Sbjct: 94 ---------SKHNSNHVVSSFFQGDGDGPEI--------------DSLIPG-------NF 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V + T G+ I + D MF + + P Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQGNVNVTI---TPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + + I GHTD++PF R + NW LS RA A L++ G+ Sbjct: 181 FFEDLLLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFI 274 >gi|153831776|ref|ZP_01984443.1| lateral flagellar motor protein B [Vibrio harveyi HY01] gi|148872286|gb|EDL71103.1| lateral flagellar motor protein B [Vibrio harveyi HY01] Length = 330 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 66/329 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++ K+ A + + G+WK+ +ADFM LMA FLV+W++ D + +KAI + + Sbjct: 7 VVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHLH---- 62 Query: 75 NLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 S +FD+ NP + S S + IDL+ D + Sbjct: 63 -----SSSVFDKSYGNPFDTSQSISPIDLAQDSSV------------------------- 92 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S H +S + G ++ + +P +++ Sbjct: 93 ---PSKHNSNHVVSSFFQGDGDGPEI--------------DSLIPG-------NFDTQEQ 128 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L LAK I + + A V + T G+ I + D MF + + P + Sbjct: 129 LALLAKVIDEVVGQISAQGNVNVTI---TPQGLRIVLQDDYKQHMFSRGGAELTPFFEDL 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + V + + I GHTD++PF R + NW LS RA A L++ G+ +DR+ Sbjct: 186 LLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGMPDDRV 245 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 +++G + L +P +S NRRI++ + Sbjct: 246 MQVTGMSDRALLNPEEPDSSENRRIELFI 274 >gi|332162880|ref|YP_004299457.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604276|emb|CBY25774.1| flagellar motor rotation protein MotB [Yersinia enterocolitica subsp. palearctica Y11] gi|325667110|gb|ADZ43754.1| Flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863328|emb|CBX73451.1| putative protein mbhA [Yersinia enterocolitica W22703] Length = 272 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 73/310 (23%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN-----P 89 + +ADF +MA F+V+WI+ ++ ++ I N K IF +Q+ Sbjct: 1 MAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPS 51 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 +S K S+D H +Q++ K++L Sbjct: 52 KSKSGGGKFSDSVDGH--------------------------------EQAKETKSNLA- 78 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + + E+S+ + L + + +++L + I+ S A Sbjct: 79 --------VEVPEPEQSLEE--------------LVDRSGREMEELTRIITQITSAYDAQ 116 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + +K E G+ I I D ++ MF +SS++ P +L ++ I I Sbjct: 117 SNLK---MEVVPQGLRILIQDDKHRDMFQRSSAVLTPFFSRLLAELAPAFNEMDNKIIIT 173 Query: 270 GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTDAS +R+ + +NW LS +RA A++ L+K G+ +DR+ +I+ A L +++P+ Sbjct: 174 GHTDASRYRDQVLYNNWNLSGERALMAHKALVKGGLDDDRVLQINAMAEQMLLDSAEPLA 233 Query: 329 SANRRIDILV 338 + NRRI+I+V Sbjct: 234 AKNRRIEIMV 243 >gi|330501613|ref|YP_004378482.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01] gi|328915900|gb|AEB56731.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01] Length = 334 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMF S+ P +L + + + ISI GHTDA Sbjct: 147 ILFEITQDGLRIQIMDAENRPMFALGSAELQPYFEDILLAMADTIRAVPNKISISGHTDA 206 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 PF NW LS +RA +A + L+ G +++++++ G+A L +DP N NRR Sbjct: 207 KPFAGRGDFGNWELSSNRANAARRTLVAGGYPDEQVARVVGYASSALFDRADPFNPVNRR 266 Query: 334 IDILV 338 IDI+V Sbjct: 267 IDIVV 271 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 6/67 (8%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 EN+Q II+K KK A ++ G+WKI +ADF T +MAFFLVMW++++ + K+AI Sbjct: 2 ENNQPIIVKRVKKTAGG---HHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKRAISG 58 Query: 68 YF-NPFG 73 YF +P G Sbjct: 59 YFQDPIG 65 >gi|187478167|ref|YP_786191.1| flagellar motor protein MotB [Bordetella avium 197N] gi|115422753|emb|CAJ49281.1| chemotaxis protein [Bordetella avium 197N] Length = 324 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 3/153 (1%) Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + RL+ L +++ + + + V N +L + T G+ I I+D +N PMF S+ P Sbjct: 116 RHRLESLKRRLEAVIDNSPVLKNFRPQLLIDLTTEGLRIQIVDSQNRPMFATGSAQVQPY 175 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L+++G VL +SI GHTDA+ + R A NW LS DRA ++ Q L+ G++ Sbjct: 176 MRDILRELGPVLNDLPNKVSISGHTDATQYARRERAYSNWELSTDRANASRQELVAGGMT 235 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E ++ +I G A + DP + NRRI ++V Sbjct: 236 EGKVMRIQGLASSMSIVKDDPYAAVNRRISLVV 268 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N+ +++++K + ++ GSWKI YADF+T +MAFFLVMW+++ + K I YF Sbjct: 5 NNHRVVVRRKRS-SAKAHHGGSWKIAYADFITAMMAFFLVMWLVSIVPREELKGIADYF 62 >gi|241763663|ref|ZP_04761713.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] gi|241367138|gb|EER61504.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] Length = 310 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L++IG L IS+ GHTDA Sbjct: 151 IRIDVTPDGLQIQIVDNQNRPMFDSGSALVKPYMRDILREIGAALGGVENRISLAGHTDA 210 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ N R NW LS DRA ++ + L+ +G+ + ++ ++ G A L +P ANR Sbjct: 211 APYGNSDRGYSNWELSADRANASRRELVSAGMPDAKLGRVVGLAASDLLEPDNPRAPANR 270 Query: 333 RIDILVEDRQ 342 RI I V R+ Sbjct: 271 RITITVLTRE 280 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K++ + G+WKI YADF+T +MAFFL+MW++ +T + I YFN K Sbjct: 9 IIIKRIKKSGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFNSPLKV 68 Query: 76 LMTASKG 82 M G Sbjct: 69 AMVGGDG 75 >gi|226941125|ref|YP_002796199.1| flagellar motor protein MotB [Laribacter hongkongensis HLHK9] gi|226716052|gb|ACO75190.1| MotB [Laribacter hongkongensis HLHK9] Length = 293 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E T G+ + I+D++N PMFD S+ LP T +L ++G++ +S+ GHTDA Sbjct: 137 LLLEMTPEGLKVQIVDEKNRPMFDSGSANLLPHTKDILHELGKMFNDVPNRLSVSGHTDA 196 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ R NW LS DRA +A + L+ G+ + +I ++ G + +N NR Sbjct: 197 TPYAGGERGYSNWDLSADRANAARRELLAGGMQDQKILRVVGLGSANPLDKQNAVNPINR 256 Query: 333 RIDILVEDRQ 342 RI I+V ++Q Sbjct: 257 RIAIVVLNKQ 266 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 9/114 (7%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q II K++ ++ G+WKI YADF+T +MAFFL+MW++++ T I +YF Sbjct: 6 QRPIIVKRIKKGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVSQGTLAGISEYFKTP 65 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 K ++ G D + + Q+ +T+++ +K N+++Q +R Sbjct: 66 LKVALSGGDGSGDATSAIKGGGQD---------LTRSAGQVKRTYMNEERQRER 110 >gi|206890444|ref|YP_002248653.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742382|gb|ACI21439.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 252 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R KR ++ KK + D+I + +T G+ I I+D PMF SS+ P + Sbjct: 98 RAKRFEEQFKKTIEEKLKELKDHI----MIDTVEGGVRIQIVDLEGEPMFPLSSAEPTEK 153 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+ + E + +++ GHTDA PFR NW LS RA SA + + + GV+ + Sbjct: 154 AREILKVVAENIKDEPARVAVEGHTDAVPFRGGKTTNWELSTARASSARREIERYGVAPE 213 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV---EDRQG 343 +I+++ G+A I DP + NRRI I++ +++QG Sbjct: 214 KIARVVGYADTLPLIKDDPKDPRNRRISIILMFEKEKQG 252 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--- 72 II KK+ ++ GSWK+ YADF T +MAFFL++W+++ D + AI YF F Sbjct: 9 IIVKKIKKGHEAHHGGSWKVAYADFTTAMMAFFLLLWLLSMLDPVKRAAIADYFRYFNLL 68 Query: 73 --GKNLMTASKGIFDE 86 G++ M S I E Sbjct: 69 ESGQSFMQQSSAIQQE 84 >gi|262173363|ref|ZP_06041040.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] gi|261890721|gb|EEY36708.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] Length = 315 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 129/313 (41%), Gaps = 66/313 (21%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--N 88 G+WKI ADFM LMA FLV+W++ + D +KAI + N S +FDE N Sbjct: 23 GAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHLN---------SSNVFDESYGN 73 Query: 89 PPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + S S + IDL+ D + + S H +S Sbjct: 74 PFDTSNSISPIDLASDSSV----------------------------PSRHNSNHVVSSF 105 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + G + ++ ++ + +E L L + KK+ +S Sbjct: 106 FQGDGDGPE--SNSLIDGNFETQEQLTL----------------LAKVVKKVIGQVSAQG 147 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 N+ T G+ I + D MF + S P +L + V I Sbjct: 148 NVNVT------VTPQGLRIVLQDDYKQFMFSRGGSELTPFFEDLLLALAPVFQRVANPII 201 Query: 268 IRGHTDASPFR-NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I GHTD+ PFR I++ NW LS RA A + L+ G+ +R+ +++G + L + Sbjct: 202 ISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAERVLQVTGMSDRALLNQTA 261 Query: 326 PMNSANRRIDILV 338 P +S NRRI++ V Sbjct: 262 PDSSENRRIELFV 274 >gi|258624680|ref|ZP_05719615.1| chemotaxis LafU protein [Vibrio mimicus VM603] gi|258583072|gb|EEW07886.1| chemotaxis LafU protein [Vibrio mimicus VM603] Length = 315 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 129/313 (41%), Gaps = 66/313 (21%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--N 88 G+WKI ADFM LMA FLV+W++ + D +KAI + N S +FDE N Sbjct: 23 GAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHLN---------SSNVFDESYGN 73 Query: 89 PPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + S S + IDL+ D + + S H +S Sbjct: 74 PFDTSNSISPIDLASDSSV----------------------------PSRHNSNHVVSSF 105 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + G + ++ ++ + +E L L + KK+ +S Sbjct: 106 FQGDGDGPE--SNSLIDGNFETQEQLTL----------------LAKVVKKVIGQVSAQG 147 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 N+ T G+ I + D MF + S P +L + V I Sbjct: 148 NVNVT------VTPQGLRIVLQDDYKQFMFSRGGSELTPFFEDLLLALAPVFQRVANPII 201 Query: 268 IRGHTDASPFR-NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I GHTD+ PFR I++ NW LS RA A + L+ G+ +R+ +++G + L + Sbjct: 202 ISGHTDSIPFRKKISKTSNWELSASRANVARKALVDGGMPAERVLQVTGMSDRALLNQTA 261 Query: 326 PMNSANRRIDILV 338 P +S NRRI++ V Sbjct: 262 PDSSENRRIELFV 274 >gi|258622497|ref|ZP_05717519.1| chemotaxis LafU protein [Vibrio mimicus VM573] gi|258585197|gb|EEW09924.1| chemotaxis LafU protein [Vibrio mimicus VM573] Length = 315 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 126/313 (40%), Gaps = 66/313 (21%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--N 88 G+WKI ADFM LMA FLV+W++ + D +KAI + N S +FDE N Sbjct: 23 GAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHLN---------SSNVFDESYGN 73 Query: 89 PPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + S S + IDL+ D + S H N + Sbjct: 74 PFDTSNSISPIDLASDSSVP--------------------------------SRHNSNHV 101 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 +G +D N E L L+K + KK+ +S Sbjct: 102 VSSFFQGDGDGPESDSLIDGNFETQEQLTLLAK--------------VVKKVIGQVSAQG 147 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 N+ T G+ I + D MF + S P +L + V I Sbjct: 148 NVNVT------VTPQGLRIVLQDDYKQFMFSRGGSELTPFFEDLLLALAPVFQRVANPII 201 Query: 268 IRGHTDASPFR-NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I GHTD+ PFR I++ NW LS RA A + L+ G+ +R+ +++G + L + Sbjct: 202 ISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAERVLQVTGMSDRALLNQTA 261 Query: 326 PMNSANRRIDILV 338 P +S NRRI++ V Sbjct: 262 PDSSENRRIELFV 274 >gi|283834436|ref|ZP_06354177.1| MbhA protein [Citrobacter youngae ATCC 29220] gi|291069983|gb|EFE08092.1| MbhA protein [Citrobacter youngae ATCC 29220] Length = 332 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/325 (25%), Positives = 150/325 (46%), Gaps = 56/325 (17%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ + +N Sbjct: 16 IIRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKADR-----------EN 64 Query: 76 LMTASKG--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 ++ A G IF N + NK+ I QKK R N + Sbjct: 65 IVAALHGQSIF---NGGGMAPLNKLGKQ------------PIAPGAQKKNVTR--NKLDK 107 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 N Q++ +++K D+ + T L K + +E L L+ + I + RK ++ Sbjct: 108 TVNPQETARITEE---NAKKALDVNEKTALLKQKSAQE---LGELATD-INVIARKAHME 160 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + L + + +G+ +LI RN MF++ S+ +P +L Sbjct: 161 ----------TNLEMEIVPQGLR-------VLIKDDQNRN--MFERGSAKIMPFFKSLLV 201 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++ V I I GHTDA +++ +NW LS DRA SA +VL +G+ +D++ ++S Sbjct: 202 ELAPVFDSLDNKIIITGHTDAMSYKSNIYNNWNLSGDRALSARRVLEDAGMPQDKVMQVS 261 Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338 A L A +P ++ NRRI+I+V Sbjct: 262 AMADQMLLDAKNPESAGNRRIEIMV 286 >gi|322433005|ref|YP_004210254.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321165232|gb|ADW70936.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 309 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K + T G+ I +++ F+ SS P P +L+ + E L ISI GHT Sbjct: 112 KQIEMTVTEEGLRIELVEDAKGTFFETGSSKPTPALEEILKVLSEQLKSLPNSISIEGHT 171 Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 DA P+ NW LS DRA A + + ++G+ D++S++ GFA RL + P++++N Sbjct: 172 DAQPYATATVYGNWELSTDRANVARREMQENGIRTDQVSQVRGFADQRLHVPEKPLDASN 231 Query: 332 RRIDILVED 340 RRI ++V++ Sbjct: 232 RRISLVVQN 240 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKG 82 WK+ YADF+T +M+ F+V+W++++T T++ I YFN P G + ++G Sbjct: 25 WKVAYADFVTAMMSLFIVLWLMSSTSKQTQEEIAGYFNDPKGTSTKHGTEG 75 >gi|121997035|ref|YP_001001822.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1] gi|121588440|gb|ABM61020.1| OmpA/MotB domain protein [Halorhodospira halophila SL1] Length = 346 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E T G+ I ++D PMF+ S+ P T +L+ + VL +S+ GHTDA Sbjct: 130 ILLEITDDGLRIQLVDHDGRPMFELGSADPREHTEEILRALARVLEDVPNPVSLSGHTDA 189 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 PF DNW LS DRA +A L+ G+ +RI ++ G+A DP NRRI Sbjct: 190 RPFARDDYDNWSLSTDRANAARLTLLDGGLPAERIGQVVGYADTVPFDPDDPRADINRRI 249 Query: 335 DILVEDRQG 343 +++ R+ Sbjct: 250 SVVLLSREA 258 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +EN ++ KKVA ++ GSWKI +ADFMT + A FLV+W++ A DDD ++ I QY Sbjct: 3 EENKTRPVVIKKVAKHGDDHHGGSWKIAFADFMTAMFAIFLVLWLLLALDDDQRQGIGQY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 F AS+ I D + ER + IDLS Sbjct: 63 FRDPQAAHPPASRDIIDFEG--ERRA--PIDLS 91 >gi|319764525|ref|YP_004128462.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|317119086|gb|ADV01575.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] Length = 312 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L++IG L IS+ GHTDA Sbjct: 150 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGAALGSVENRISLAGHTDA 209 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ N R NW LS DRA ++ + L+ +G+ + R+ ++ G A L +P NR Sbjct: 210 APYGNGDRGYSNWELSADRANASRRELVAAGMPDARLGRVVGLAASDLLEPDNPRAPVNR 269 Query: 333 RIDILV 338 RI I V Sbjct: 270 RITITV 275 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 II K++ + G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 9 IIIKRIKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62 >gi|330826741|ref|YP_004390044.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|329312113|gb|AEB86528.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 311 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L++IG L IS+ GHTDA Sbjct: 150 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGAALGSVENRISLAGHTDA 209 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ N R NW LS DRA ++ + L+ +G+ + R+ ++ G A L +P NR Sbjct: 210 APYGNGDRGYSNWELSADRANASRRELVAAGMPDARLGRVVGLAASDLLEPDNPRAPVNR 269 Query: 333 RIDILV 338 RI I V Sbjct: 270 RITITV 275 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 II K++ + G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 9 IIIKRIKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62 >gi|226225701|ref|YP_002759807.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27] gi|226088892|dbj|BAH37337.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27] Length = 289 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 2/123 (1%) Query: 218 ETTRTGILISIID-QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + T+ G+ I +++ +R F SS T++ LQ IG+ L+ + + I GHTDA+P Sbjct: 132 QVTQEGLRIELVESERGDVYFPIGSSQMNSATVLTLQLIGQELSPIAQSLIIEGHTDAAP 191 Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 F R+ + NW LS DRA +A +VL +G+ RIS++ G+A + ++ +DP ANRRI Sbjct: 192 FGRDASYTNWELSADRANAARRVLQAAGIDPKRISEVRGYADTKPRVINDPKAPANRRIS 251 Query: 336 ILV 338 +L+ Sbjct: 252 VLI 254 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 2/43 (4%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73 SWK+ YADF+T +MAFF+VMWI+ DD TK+AIE YF NP G Sbjct: 26 SWKVAYADFVTAMMAFFMVMWILG-MDDKTKQAIEGYFANPVG 67 >gi|326795804|ref|YP_004313624.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326546568|gb|ADZ91788.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 300 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 5/125 (4%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E T G+ I+++D PMF++ S+ +P++ VL IG +LA ISI GHTD+SP Sbjct: 144 IEITPQGVRITLLDDPTKPMFERGSARLMPDSENVLLGIGSILARLKNPISISGHTDSSP 203 Query: 277 F---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + R I DNW LS RA SA +++ + GVS+ R++++ G A DP ++ NRR Sbjct: 204 YVDEREI--DNWDLSSARANSARKIIEEGGVSDKRMAQVIGLADSIPYNRFDPTSAENRR 261 Query: 334 IDILV 338 I I + Sbjct: 262 ISITL 266 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 3/100 (3%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89 G+WKI ADF +MAFFLV+WIIN AIE YFN P G + S D Sbjct: 22 GAWKIALADFALAMMAFFLVLWIINVASPQELAAIEGYFNDPLGPSTAGYSANPIDLGGS 81 Query: 90 PERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQRL 127 P +S++ K+DL + E + V + K G N K+ +R+ Sbjct: 82 PAKSNEKKLDLGLPEPGSTEQVTQERKQGEGNDGKEIERM 121 >gi|119385422|ref|YP_916478.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222] gi|119375189|gb|ABL70782.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222] Length = 266 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 69/324 (21%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 IIIKK D ++ G+WK+ YADF+T +MAFFL+MW++NAT + ++ + YFNP Sbjct: 10 IIIKKVQGGGDAGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRQGLADYFNP--- 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L+ + T++ D G + Q E N Sbjct: 67 TLIQS---------------------------TRSGHDGPFGG-----EVQDAETN---- 90 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + + + ++SL ++ G+D D+ + I + L+ ++++ L+ Sbjct: 91 -SGKGAGASRDSLAARTQDGRD-TGFEDMARHIQDQ-------LTGSGAESLQKVNLLRH 141 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + +++ +G++ E T D + P+F S+ P P + Sbjct: 142 VVTRMTD-----------EGLVIELT---------DLMDEPLFVGDSAQPTPAMKELAGI 181 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + VL I++ GH A P I W LS RA++ +L +G RI +++ Sbjct: 182 LSGVLGRVRNEIALTGHVRAYPEMLIQSPVWALSDARAHALRNLLEGAGFDTTRIQRVTA 241 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 FA R + + +PM+ N RI++++ Sbjct: 242 FADRRNR-SVNPMDPDNNRIEVIL 264 >gi|89067516|ref|ZP_01155029.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516] gi|89047085|gb|EAR53139.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516] Length = 270 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/324 (23%), Positives = 136/324 (41%), Gaps = 67/324 (20%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 IIIK+K ++ G+WK+ YADF+T +MAFF++MW++NAT + + Sbjct: 9 IIIKRKKITGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQR------------ 56 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 KGI D +P + I + +NIF Sbjct: 57 ------KGIADYFSP----------------------TIPINRISGGGDGAFGGDNIF-- 86 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 N+L ++ G + + D EE ++ A+++ + Q Sbjct: 87 --------TDNTL---AQSGTNPGATGDAVPGATAEE--------AAQVAALEQIEE-QL 126 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L + S ++AD ++ ++ + T G++I I D P+F ++ P P T+ + Sbjct: 127 LGRGGES----MIADEALQHIVTKLTDEGLVIEIFDLDGAPLFAPGTAEPEPVTVELAAV 182 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VLA +++ GH A P W LS RA ++L SG + +RI +++G Sbjct: 183 FARVLALVDNDVALAGHVRARPVVVADSRVWPLSTSRATRFRELLEASGQAPERIVRVTG 242 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 A R + ++ N R++++V Sbjct: 243 HA-DRAPAVRNAVSLRNNRLEVVV 265 >gi|134094523|ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas arsenicoxydans] gi|133738426|emb|CAL61471.1| Chemotaxis protein MotB (Motility protein B) [Herminiimonas arsenicoxydans] Length = 327 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL+ L ++I + + + K +L + T G+ I I+D++N PMF S + P T Sbjct: 125 RLKSLKERIEEAIDSIPSLRQYKNQLLLDITSEGLRIQIVDEKNRPMFALSKADLQPYTK 184 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307 ++L +I + L IS+ GHTDA+P+ + + NW LS DRA ++ + L+ G+ E Sbjct: 185 LILHEIAKTLNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGMEEA 244 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G + L DP+N NRRI I+V +++ Sbjct: 245 KMLRVVGLSSAVLFDQKDPLNPINRRISIIVMNKK 279 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II K++ ++ G+WKI YADF+T +MAFFL+MW++ +T + I YF+ K Sbjct: 9 IIVKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGNLQGIADYFSTPLKV 68 Query: 76 LMTASKGIFD 85 M G D Sbjct: 69 AMAGGSGSGD 78 >gi|326319083|ref|YP_004236755.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375919|gb|ADX48188.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 312 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L++IG L IS+ GHTDA Sbjct: 151 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGAALGGVENRISLAGHTDA 210 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ N R NW LS DRA ++ + L+ +G+ + ++ ++ G A L +P NR Sbjct: 211 APYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGLAASDLLEPENPRAPVNR 270 Query: 333 RIDILV 338 RI I V Sbjct: 271 RITITV 276 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 II K+V + G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 9 IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62 >gi|83717140|ref|YP_438356.1| chemotaxis lafU protein [Burkholderia thailandensis E264] gi|167614802|ref|ZP_02383437.1| Chemotaxis lafU protein [Burkholderia thailandensis Bt4] gi|257141387|ref|ZP_05589649.1| chemotaxis lafU protein [Burkholderia thailandensis E264] gi|83650965|gb|ABC35029.1| Chemotaxis lafU protein [Burkholderia thailandensis E264] Length = 311 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 76/310 (24%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WK+ +ADF LMA F+V+W++N T + +K + G+ GIF+ Sbjct: 27 GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIA--GRPFFDGGVGIFE----- 79 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 QR + ++QQ E K Sbjct: 80 ----------------------------------QRSRKPVVAPFDAQQPERVKRR---- 101 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 E++I+ L + + LA R+ D A ++ + G VA Sbjct: 102 -------TPGAARERTIDS--------LQQRRALA----ARIMDEASRLG--MDGNVATA 140 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 I G+ I+I D MF++ S P+ + +L + VL T + I G Sbjct: 141 I--------NDDGVRITIHDSDKQGMFERRSDALNPQFVRLLTALVPVLGTVTNKMVIVG 192 Query: 271 HTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTDA+ + + + +NW LS RA A Q+L G+ R+ +ISG + +P + Sbjct: 193 HTDATQYADTSVFSNNWNLSSRRALRARQILADGGMDVQRMFQISGMGDSVPAVPDNPNH 252 Query: 329 SANRRIDILV 338 NRR+++L+ Sbjct: 253 DMNRRVELLL 262 >gi|302877353|ref|YP_003845917.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580142|gb|ADL54153.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 295 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ I IID +N PMF+ S+I P T+ +L+ IG L I + GHTDA+ + Sbjct: 159 DLTSEGLRIMIIDAKNRPMFEIGSAILQPYTVEILRSIGSTLNRVPNKIGLSGHTDAANY 218 Query: 278 R--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + NW LS DRA ++ + L+ G+ +++I ++ G + L +DP ++ NRRI Sbjct: 219 QGGSAGYSNWDLSADRANASRRTLIAGGMGQEKILRVVGLSDSVLFNPADPYDAHNRRIS 278 Query: 336 ILVEDRQ 342 I+V +++ Sbjct: 279 IIVMNQK 285 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 33/39 (84%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 G+WKI YADF+T LMAFFL++W+I++T D ++AI +YF Sbjct: 29 GAWKIAYADFVTALMAFFLMLWLISSTSADYRQAISEYF 67 >gi|297538877|ref|YP_003674646.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297258224|gb|ADI30069.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 311 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ + I+D++N MF+ S + P +LQ++G+ L IS+ GHTDA Sbjct: 152 LLLDITSDGLRVQIVDEQNRAMFNSSKAEMQPYAKQILQELGKTLNDVPNKISLSGHTDA 211 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ N + NW LS DRA ++ + L+ G+ E ++ ++ G + L +P ++ NR Sbjct: 212 TPYPNGEKSYSNWELSSDRANASRRELVAGGMDETKLLRVVGLSSASLFNKENPFDATNR 271 Query: 333 RIDILVEDRQ 342 RI I++ ++Q Sbjct: 272 RISIIIMNKQ 281 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 29/39 (74%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +WKI YADF+T +MAFFL+MW++ +T + K I YFN Sbjct: 25 AWKIAYADFVTAMMAFFLLMWLLGSTSKEQKAGISDYFN 63 >gi|121611336|ref|YP_999143.1| OmpA/MotB domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121555976|gb|ABM60125.1| OmpA/MotB domain protein [Verminephrobacter eiseniae EF01-2] Length = 327 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G+ I IID++N PMFD S+ LP +L IG L IS+ GHTDA P+ Sbjct: 160 TPDGLQIQIIDEQNRPMFDSGSARVLPHMRDILHAIGAALGGVKNRISLAGHTDAVPYGK 219 Query: 280 IAR------DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 NW LS DRA ++ + L+ +G+ +D++ ++ G A DP+ ANRR Sbjct: 220 YGPHDEPGYSNWELSADRANASRRELVSAGMPDDQLGRVVGLAASDPLAPDDPLAPANRR 279 Query: 334 IDILV 338 I I V Sbjct: 280 ISITV 284 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK 74 II ++V ++G+WKI YADF+T +MAFFL++W++ +T + I YF P G Sbjct: 16 IIVRRVHRAAPAGHMGTWKIAYADFVTAMMAFFLLLWLLGSTAKGDLQEIAAYFAAPLGA 75 Query: 75 NLM 77 +++ Sbjct: 76 SMV 78 >gi|23010955|ref|ZP_00051470.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 464 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 11/189 (5%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K D+ + E +KE +P + ++AK + S G A + Sbjct: 279 KAADIKPAPKAEAPPSKEPAAAIPAEGAKSAETAALAALKDEIAKAVPSLPMGAPAPRV- 337 Query: 213 KGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 E RTG +LISI D+ N MF S+ P P+ + L++I ++L + +RG Sbjct: 338 -----EVRRTGEGVLISITDEINFSMFGIGSAEPTPKVVKALERIAKILNTRPGRVVVRG 392 Query: 271 HTDASPFRNIARDNWRLS-LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HTDA PFR+ DNWRLS R + + S R S S + +IA+DP + Sbjct: 393 HTDARPFRSETYDNWRLSRPGRRWP--PTCWCAAASTRRGSSASKLCRPQPRIAADPKAA 450 Query: 330 ANRRIDILV 338 NRRI+IL+ Sbjct: 451 ENRRIEILL 459 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 2/79 (2%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + IIIK+ +D ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YFNP Sbjct: 7 EIIIIKRHGDHEDG-HHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYFNPV 65 Query: 73 GKNLMTAS-KGIFDEQNPP 90 +T KG+ D QN P Sbjct: 66 KLAEVTHDRKGVNDPQNTP 84 >gi|167576627|ref|ZP_02369501.1| Chemotaxis lafU protein [Burkholderia thailandensis TXDOH] Length = 311 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 126/312 (40%), Gaps = 80/312 (25%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKK--AIEQYFNPFGKNLMTASKGIFDEQN 88 G+WK+ +ADF LMA F+V+W++N T + +K A E +PF GIF+ Sbjct: 27 GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIAGHPF----FDGGVGIFE--- 79 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 QR + ++QQ E K Sbjct: 80 ------------------------------------QRSRKPVVAPFDAQQPERVKRR-- 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 E++I+ L + + LA R+ D A ++ ++G VA Sbjct: 102 ---------TPGAARERTIDS--------LQQRRALA----ARIMDEATRLG--MNGNVA 138 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 I G+ I+I D MF++ S P+ + +L + VL T + I Sbjct: 139 TAI--------NDDGVRITIHDSDKQGMFERRSDALNPQFVRLLTALVPVLGTVTNKMVI 190 Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 GHTDA+ + + + +NW LS RA A Q+L G+ R+ +ISG + +P Sbjct: 191 VGHTDATQYADTSVFSNNWNLSSRRALRARQILADGGMDAQRMFQISGMGDSVPAVPDNP 250 Query: 327 MNSANRRIDILV 338 + NRR+++L+ Sbjct: 251 DHDMNRRVELLL 262 >gi|253774745|ref|YP_003037576.1| hypothetical protein ECBD_3391 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300929521|ref|ZP_07144987.1| OmpA family protein [Escherichia coli MS 187-1] gi|253325789|gb|ACT30391.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300462520|gb|EFK26013.1| OmpA family protein [Escherichia coli MS 187-1] Length = 211 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N DNW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172 >gi|312970356|ref|ZP_07784537.1| lateral flagellar motor protein B [Escherichia coli 1827-70] gi|310337005|gb|EFQ02143.1| lateral flagellar motor protein B [Escherichia coli 1827-70] Length = 256 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA+SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRAFSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|170723854|ref|YP_001751542.1| flagellar motor protein MotB [Pseudomonas putida W619] gi|169761857|gb|ACA75173.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 339 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + IS+ GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISVSGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ + NW LS +RA +A + L+ G +D+++++ G+A L DP N NRR Sbjct: 206 KPYSGSSEFGNWELSANRANAARRALVAGGYPDDQVARVVGYASSSLFDRKDPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRYGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFG 73 +P G Sbjct: 61 KDPIG 65 >gi|66043829|ref|YP_233670.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae B728a] gi|63254536|gb|AAY35632.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|330971543|gb|EGH71609.1| flagellar motor protein MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 349 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 65/331 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMA-FFLVMWIINATDDDTKKAIEQY 68 EN+Q IIIK+ V ++ G+WKI +ADF T +MA F ++ + +AT + + Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 +P G D +P IDL ++ N Sbjct: 61 KDPV---------GFSDSGSP------YVIDLGGSPEMSPNQT----------------- 88 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 L+ Q+ +++ ++E + ++ + E+ L L +E ++ Sbjct: 89 -----LNPEVQTTPSPDTVPLEAENAETKAEAVEQER---------LEMLLQELQTKVEE 134 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +LQ +I LFE T+ G+ I I+D N PMFD S+ P Sbjct: 135 NPQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + +SI GHTDA+PF NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 +++++ G+A L +P N NRRIDI+V Sbjct: 239 QVARVVGYASSALYDRQNPTNPINRRIDIVV 269 >gi|293607844|ref|ZP_06690158.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553] gi|292813756|gb|EFF72923.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553] Length = 340 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 3/155 (1%) Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL++L K++ + + + V + +L + T G+ I IID +N PMF + Sbjct: 127 REQHRLENLKKRLENVIETSPVLKSFRPQMLIDLTTEGLRIQIIDNQNRPMFATGRAEVQ 186 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L+++G VL +SI GHTDAS + R NW LS DRA ++ Q L+ G Sbjct: 187 PYMRDILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGG 246 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++E ++ +I G + + DP + NRRI ++V Sbjct: 247 MNESKVMRIQGLSSSMSLVKDDPYAAVNRRISLVV 281 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N+ ++I++K + ++ GSWKI YADF+T +MAFFLVMW+I+ + K I +YF Sbjct: 16 NNHRVVIRRK-KVKGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYF 73 >gi|120613045|ref|YP_972723.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1] gi|120591509|gb|ABM34949.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 312 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L++IG L IS+ GHTDA Sbjct: 151 IRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILREIGSALGGVENRISLAGHTDA 210 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +P+ N R NW LS DRA ++ + L+ +G+ + ++ ++ G A L +P NR Sbjct: 211 APYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGLAASDLLEPDNPRAPVNR 270 Query: 333 RIDILV 338 RI I + Sbjct: 271 RITITI 276 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 II K+V + G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 9 IIIKRVKKGGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF 62 >gi|330901956|gb|EGH33293.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 302 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 65/331 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMA-FFLVMWIINATDDDTKKAIEQY 68 EN+Q IIIK+ V ++ G+WKI +ADF T +MA F ++ + +AT + + Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 +P G D +P IDL ++ N Sbjct: 61 KDPV---------GFSDSGSP------YVIDLGGSPEMSPNQT----------------- 88 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 L+ Q+ +++ ++E + ++ + E+ L L +E ++ Sbjct: 89 -----LNPEVQTTPSPDTVPIEAENAETKAEAVEQER---------LEMLLQELQTKVEE 134 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +LQ +I LFE T+ G+ I I+D N PMFD S+ P Sbjct: 135 NPQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + +SI GHTDA+PF NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 +++++ G+A L +P N NRRIDI+V Sbjct: 239 QVARVVGYASSALYDRQNPTNPINRRIDIVV 269 >gi|320643247|gb|EFX12446.1| hypothetical protein ECO9389_21954 [Escherichia coli O157:H- str. 493-89] gi|320648894|gb|EFX17512.1| hypothetical protein ECO2687_10031 [Escherichia coli O157:H- str. H 2687] Length = 256 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVQIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|222112258|ref|YP_002554522.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY] gi|221731702|gb|ACM34522.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY] Length = 313 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L +IG L IS+ GHTDA Sbjct: 151 IRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILHQIGAALGGVENRISLSGHTDA 210 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ N R NW LS DRA ++ + L+ +G+ + ++ ++ G A L +P + NR Sbjct: 211 VPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGMAASDLLEPQNPRAAVNR 270 Query: 333 RIDILV 338 RI I V Sbjct: 271 RITITV 276 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ P+ G+WKI YADF+T +MAFFL+MW++ +T + I YF+ Sbjct: 7 QPIIIKRAKKRPHAPHG-GAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFSSP 65 Query: 73 GKNLMTASKG 82 K M G Sbjct: 66 LKVAMQGGDG 75 >gi|121596103|ref|YP_987999.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42] gi|120608183|gb|ABM43923.1| OmpA/MotB domain protein [Acidovorax sp. JS42] Length = 313 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + T G+ I I+D +N PMFD S++ P +L +IG L IS+ GHTDA Sbjct: 151 IRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDILHQIGAALGGVENRISLSGHTDA 210 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ N R NW LS DRA ++ + L+ +G+ + ++ ++ G A L +P + NR Sbjct: 211 VPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKLGRVVGMAASDLLEPQNPRAAVNR 270 Query: 333 RIDILV 338 RI I V Sbjct: 271 RITITV 276 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ P+ G+WKI YADFMT +MAFFL+MW++ +T + I YF+ Sbjct: 7 QPIIIKRAKKRPHAPHG-GAWKIAYADFMTAMMAFFLLMWLLGSTAKGELQGIAAYFSSP 65 Query: 73 GKNLMTASKG 82 K M G Sbjct: 66 LKVAMQGGDG 75 >gi|295690006|ref|YP_003593699.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431909|gb|ADG11081.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756] Length = 299 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 72/128 (56%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K +L + T G+ I ++DQ MF ++S +P ++L+ + +V+ ++I G Sbjct: 161 LSKQILIDQTPEGLRIQLVDQEGRSMFQENSKVPNDRARILLRAVAKVITQLPNRVTISG 220 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HT AS + +W LS RA ++ Q+L +GV +DRI ++SG A+ A DP + Sbjct: 221 HTSASAYGKKQDGDWSLSASRADASRQILRAAGVDDDRIYQVSGKANSEPLYADDPTLAG 280 Query: 331 NRRIDILV 338 NRRI I++ Sbjct: 281 NRRISIVL 288 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ++Q I+IKK + ++ G+WK+ YADF+T +MAFFL+MW++N T + K+ I YF Sbjct: 5 SEQPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFA 64 Query: 71 P 71 P Sbjct: 65 P 65 >gi|194438259|ref|ZP_03070351.1| putative chemotaxis protein [Escherichia coli 101-1] gi|297521341|ref|ZP_06939727.1| hypothetical protein EcolOP_27134 [Escherichia coli OP50] gi|194422923|gb|EDX38918.1| putative chemotaxis protein [Escherichia coli 101-1] Length = 256 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N DNW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217 >gi|317403796|gb|EFV84276.1| chemotaxis protein MotB [Achromobacter xylosoxidans C54] Length = 329 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%) Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + RL++L K++ + + + V + +L + T G+ I IID +N PMF + P Sbjct: 118 QHRLENLKKRLENVIENSPVLKSFRPQLLIDMTTEGLRIQIIDNQNRPMFATGRAEVQPY 177 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVS 305 +L+++G VL +SI GHTDAS + R NW LS DRA ++ Q L+ G++ Sbjct: 178 MRDILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMN 237 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E ++ +I G + + DP + NRRI ++V Sbjct: 238 ESKVMRIQGLSSSMSLVKDDPYAAVNRRISLVV 270 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+ ++I++K + ++ GSWKI YADF+T +MAFFLVMW+I+ + K I +YF Sbjct: 5 NNHRVVIRRK-KVHGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYFR 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLEN 129 + +T E + ++ + DE + N V+ + +++ RLEN Sbjct: 64 MPLRVALTGGPSSSAETSAVPGGGRDPLRNDGDERRAQGNRVEAQPKGDAERRDQHRLEN 123 >gi|238784596|ref|ZP_04628602.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC 43970] gi|238714465|gb|EEQ06471.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC 43970] Length = 256 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 9/190 (4%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 DS G + K T ++ E P S E+++ K K +++L++ I S A Sbjct: 45 DSIDGHEQAKETKSNLAVEVPE----PEQSLEEVVD-KSGKEMEELSRIIMQITSTYDAQ 99 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + +K E G+ I I D + MF +SS++ P +L ++ I I Sbjct: 100 SNLK---MEVVPQGLRILIQDDKQRDMFQRSSALLTPFFSRLLAELAPAFNEMDNKIIIT 156 Query: 270 GHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTDAS +R+ R +NW LS +RA A++ L+K G+SE+R+ +I+ A L ++P+ Sbjct: 157 GHTDASRYRDQVRYNNWNLSGERALMAHKALVKGGLSEERVLQINAMADQMLLTPTEPLA 216 Query: 329 SANRRIDILV 338 ++NRRI+I+V Sbjct: 217 ASNRRIEIMV 226 >gi|300919511|ref|ZP_07136009.1| OmpA family protein [Escherichia coli MS 115-1] gi|300413405|gb|EFJ96715.1| OmpA family protein [Escherichia coli MS 115-1] Length = 211 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172 >gi|301019118|ref|ZP_07183322.1| OmpA family protein [Escherichia coli MS 69-1] gi|300399377|gb|EFJ82915.1| OmpA family protein [Escherichia coli MS 69-1] Length = 211 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172 >gi|300902537|ref|ZP_07120514.1| OmpA family protein [Escherichia coli MS 84-1] gi|301302019|ref|ZP_07208152.1| OmpA family protein [Escherichia coli MS 124-1] gi|300405350|gb|EFJ88888.1| OmpA family protein [Escherichia coli MS 84-1] gi|300842571|gb|EFK70331.1| OmpA family protein [Escherichia coli MS 124-1] gi|315253712|gb|EFU33680.1| OmpA family protein [Escherichia coli MS 85-1] Length = 211 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172 >gi|209745374|gb|ACI70994.1| putative motility protein [Escherichia coli] Length = 261 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVQIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|323963541|gb|EGB59099.1| OmpA family protein [Escherichia coli H489] gi|323972411|gb|EGB67618.1| OmpA family protein [Escherichia coli TA007] Length = 261 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N DNW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222 >gi|311105916|ref|YP_003978769.1| motility protein B 1 [Achromobacter xylosoxidans A8] gi|310760605|gb|ADP16054.1| motility protein B 1 [Achromobacter xylosoxidans A8] Length = 330 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 3/155 (1%) Query: 187 KRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL++L K++ + + + V + +L + T G+ I IID +N PMF + Sbjct: 117 REQHRLENLKKRLENVIETSPVLKSFRPQLLIDLTTEGLRIQIIDNQNRPMFATGRADVQ 176 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 P +L+++G VL +SI GHTDAS + R NW LS DRA ++ Q L+ G Sbjct: 177 PYMRDILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGG 236 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++E ++ +I G + + DP + NRRI ++V Sbjct: 237 MNESKVLRIQGLSSSMSLVKDDPYAAVNRRISLVV 271 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N+ ++I++K ++ GSWKI YADF+T +MAFFLVMW+I+ + K I +YF Sbjct: 5 NNHRVVIRRKKGGHGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYF 63 >gi|300977371|ref|ZP_07173862.1| OmpA family protein [Escherichia coli MS 45-1] gi|301045873|ref|ZP_07193060.1| OmpA family protein [Escherichia coli MS 185-1] gi|300302123|gb|EFJ58508.1| OmpA family protein [Escherichia coli MS 185-1] gi|300409896|gb|EFJ93434.1| OmpA family protein [Escherichia coli MS 45-1] gi|315295164|gb|EFU54499.1| OmpA family protein [Escherichia coli MS 153-1] gi|315300866|gb|EFU60088.1| OmpA family protein [Escherichia coli MS 16-3] gi|324010200|gb|EGB79419.1| OmpA family protein [Escherichia coli MS 57-2] Length = 211 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172 >gi|148549982|ref|YP_001270084.1| flagellar motor protein MotB [Pseudomonas putida F1] gi|148514040|gb|ABQ80900.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 346 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ G+A L DP N NRR Sbjct: 206 KPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110 +P G + + + + D PE + I+ + T+ S Sbjct: 61 QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQS 101 >gi|167035946|ref|YP_001671177.1| flagellar motor protein MotB [Pseudomonas putida GB-1] gi|166862434|gb|ABZ00842.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 350 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ G+A L DP N NRR Sbjct: 206 KPYAGTGEFGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 +P G + + + + D PE + + I+ + T+ S Sbjct: 61 KDPIGFS-ESGTPYVIDLGGSPELAPEKTINPEVKAEPTQEST 102 >gi|193068683|ref|ZP_03049644.1| putative chemotaxis protein [Escherichia coli E110019] gi|192958046|gb|EDV88488.1| putative chemotaxis protein [Escherichia coli E110019] Length = 256 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLNNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|313500883|gb|ADR62249.1| MotB [Pseudomonas putida BIRD-1] Length = 346 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ G+A L DP N NRR Sbjct: 206 KPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110 +P G + + + + D PE + I+ + T+ S Sbjct: 61 QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQS 101 >gi|33592172|ref|NP_879816.1| flagellar motor protein MotB [Bordetella pertussis Tohama I] gi|33596124|ref|NP_883767.1| flagellar motor protein MotB [Bordetella parapertussis 12822] gi|33601523|ref|NP_889083.1| flagellar motor protein MotB [Bordetella bronchiseptica RB50] gi|33571817|emb|CAE41326.1| chemotaxis protein MotB [Bordetella pertussis Tohama I] gi|33573127|emb|CAE36772.1| chemotaxis protein MotB [Bordetella parapertussis] gi|33575959|emb|CAE33038.1| chemotaxis protein MotB [Bordetella bronchiseptica RB50] gi|332381588|gb|AEE66435.1| flagellar motor protein MotB [Bordetella pertussis CS] Length = 315 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 V N +L + T G+ I I+D +N PMF S+ P +L+++G VL I Sbjct: 137 VLKNFRPQLLIDMTTEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKI 196 Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 SI GHTDAS + R NW LS DRA ++ Q L+ G+ E ++ +I G A + Sbjct: 197 SIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASSMSLVKD 256 Query: 325 DPMNSANRRIDILV 338 DP + NRRI ++V Sbjct: 257 DPFAAVNRRISLVV 270 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 29/39 (74%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 GSWKI YADF+T +MAFFLVMW+I+ + K I +YF Sbjct: 24 GSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYF 62 >gi|163744356|ref|ZP_02151716.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus indolifex HEL-45] gi|161381174|gb|EDQ05583.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus indolifex HEL-45] Length = 309 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 82/145 (56%), Gaps = 4/145 (2%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +D+A++I+S G ++D + + V E + + + ++DQ +F + S+ P+T +L Sbjct: 161 EDIAERITS--DGELSD-LARNVRLEKSNGALTVQVLDQDERSLFTRGSAEVTPKTRELL 217 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 IG+V+A + + I GHTDA+ F N NW LS DRA + + LM +G++ R + Sbjct: 218 LAIGDVIAEQNQPVEIIGHTDAATFGANNGYTNWELSADRANATRRTLMAAGINGARFMR 277 Query: 312 ISGFAHHRLKIASDPMNSANRRIDI 336 +SG A + DP+ + NRRI I Sbjct: 278 VSGVADTQPINTIDPLAAENRRISI 302 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 41/60 (68%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 ++ IIIK+ A ++ G WK+ YADFMT +MAFFL++WI+ A+D++ + + YF P Sbjct: 6 NELIIIKRYDAEGGHAHHGGGWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLANYFTP 65 >gi|315287740|gb|EFU47143.1| OmpA family protein [Escherichia coli MS 110-3] Length = 211 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ VL I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 138 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172 >gi|168750213|ref|ZP_02775235.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113] gi|168763471|ref|ZP_02788478.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501] gi|168770028|ref|ZP_02795035.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486] gi|168782991|ref|ZP_02807998.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076] gi|168789703|ref|ZP_02814710.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869] gi|168800332|ref|ZP_02825339.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508] gi|187776213|ref|ZP_02801137.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196] gi|189402400|ref|ZP_02782265.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401] gi|194432761|ref|ZP_03065046.1| putative chemotaxis protein [Shigella dysenteriae 1012] gi|195938633|ref|ZP_03084015.1| hypothetical protein EscherichcoliO157_19762 [Escherichia coli O157:H7 str. EC4024] gi|208807047|ref|ZP_03249384.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206] gi|208811824|ref|ZP_03253153.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045] gi|208818543|ref|ZP_03258863.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042] gi|209397836|ref|YP_002268857.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115] gi|217325834|ref|ZP_03441918.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588] gi|254791390|ref|YP_003076227.1| hypothetical protein ECSP_0264 [Escherichia coli O157:H7 str. TW14359] gi|261223715|ref|ZP_05937996.1| hypothetical protein EscherichiacoliO157_03796 [Escherichia coli O157:H7 str. FRIK2000] gi|261255876|ref|ZP_05948409.1| hypothetical protein EscherichiacoliO157EcO_08593 [Escherichia coli O157:H7 str. FRIK966] gi|187768449|gb|EDU32293.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196] gi|188015577|gb|EDU53699.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113] gi|188999606|gb|EDU68592.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076] gi|189355696|gb|EDU74115.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401] gi|189361036|gb|EDU79455.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486] gi|189366384|gb|EDU84800.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501] gi|189370768|gb|EDU89184.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869] gi|189377329|gb|EDU95745.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508] gi|194419023|gb|EDX35107.1| putative chemotaxis protein [Shigella dysenteriae 1012] gi|208726848|gb|EDZ76449.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206] gi|208733101|gb|EDZ81788.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045] gi|208738666|gb|EDZ86348.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042] gi|209159236|gb|ACI36669.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115] gi|217322055|gb|EEC30479.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588] gi|254590790|gb|ACT70151.1| chemotaxis motB protein [Escherichia coli O157:H7 str. TW14359] gi|320190216|gb|EFW64866.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. EC1212] gi|320638165|gb|EFX07914.1| hypothetical protein ECO5101_07089 [Escherichia coli O157:H7 str. G5101] gi|320654674|gb|EFX22675.1| hypothetical protein ECO7815_10457 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660242|gb|EFX27752.1| hypothetical protein ECO5905_08983 [Escherichia coli O55:H7 str. USDA 5905] gi|320665008|gb|EFX32118.1| hypothetical protein ECOSU61_13992 [Escherichia coli O157:H7 str. LSU-61] gi|326338763|gb|EGD62582.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1044] gi|326342450|gb|EGD66230.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1125] gi|332097320|gb|EGJ02301.1| lateral flagellar motor protein B [Shigella dysenteriae 155-74] Length = 256 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|82775833|ref|YP_402180.1| hypothetical protein SDY_0484 [Shigella dysenteriae Sd197] gi|81239981|gb|ABB60691.1| putative motility protein [Shigella dysenteriae Sd197] Length = 259 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 67 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 125 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 126 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 185 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 186 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 220 >gi|85859043|ref|YP_461245.1| chemotaxis protein [Syntrophus aciditrophicus SB] gi|85722134|gb|ABC77077.1| chemotaxis protein [Syntrophus aciditrophicus SB] Length = 254 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 69/124 (55%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V+ G+ I I+D+ + MF S+ P + +L+ + E L S I + GHTDA Sbjct: 127 VMVSIVDNGLKIQIVDKEGSLMFPLGSAEPTFKAKEILRIVSENLKDSPNRIIVEGHTDA 186 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 +PFR+ NW LS RA +A + L + + RI+++ G+A L I +PM++ NRRI Sbjct: 187 APFRSAQTTNWELSTARASAARRELENNSIDPGRIARVIGYADQELFIPQNPMDARNRRI 246 Query: 335 DILV 338 I+V Sbjct: 247 SIIV 250 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 III+K ++ GSWK+ YADF+T +MAFFL++W+I + + A+ +YF F Sbjct: 8 IIIRKVKKRHHDGHHGGSWKVAYADFVTAMMAFFLLLWLITMVSPEKRSAVAEYFKTF 65 >gi|30061847|ref|NP_836018.1| hypothetical protein S0298 [Shigella flexneri 2a str. 2457T] gi|56479639|ref|NP_706230.2| hypothetical protein SF0277 [Shigella flexneri 2a str. 301] gi|110804360|ref|YP_687879.1| hypothetical protein SFV_0301 [Shigella flexneri 5 str. 8401] gi|30040091|gb|AAP15824.1| putative motility protein [Shigella flexneri 2a str. 2457T] gi|56383190|gb|AAN41937.2| putative motility protein [Shigella flexneri 2a str. 301] gi|110613908|gb|ABF02575.1| putative motility protein [Shigella flexneri 5 str. 8401] gi|281599639|gb|ADA72623.1| putative motility protein [Shigella flexneri 2002017] Length = 261 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|26991582|ref|NP_747007.1| flagellar motor protein MotB [Pseudomonas putida KT2440] gi|24986670|gb|AAN70471.1|AE016688_10 motility protein, MotB family [Pseudomonas putida KT2440] Length = 346 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKVSISGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ G+A L DP N NRR Sbjct: 206 KPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKDPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110 +P G + + + + D PE + I+ + T+ S Sbjct: 61 QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQQS 101 >gi|310816853|ref|YP_003964817.1| OmpA/MotB [Ketogulonicigenium vulgare Y25] gi|308755588|gb|ADO43517.1| OmpA/MotB [Ketogulonicigenium vulgare Y25] Length = 284 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 76/335 (22%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q +Q IIIK+K + ++ G+WK+ YADF+T +MAFFL+MWIIN+ ++ + + Sbjct: 16 QTGNQRIIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWIINSITEEQRDGLAN- 74 Query: 69 FNPFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 F G + T S G+F R SQ++ V +GS Sbjct: 75 FFATGTPVSTVSGGADGMFGG-----RDSQSQ------------QVGPAVGS-------- 109 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + Y++ + +G +S+D ILA Sbjct: 110 ----GMDYITGRM-----------PTARGASAAQSSD--------------------ILA 134 Query: 186 MKRKKRLQDLAKKISSTLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L+D+A+ +S SG LV D I + ++ T G++I + + P+F ++ Sbjct: 135 ------LEDIARVLSGQ-SGESLVDDAIQRHIITRMTDEGLVIEVFSTPDAPVFQPGGTV 187 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P ++ ++Q I V A I++ H + + W L+ RA + L +G Sbjct: 188 LTPLSLAIIQMIASVAAQVENGIAVAAHLPQQAGTD--QGAWALTAARADTIRAALEGAG 245 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 V+ R+ +++G A R I DP N R++I V Sbjct: 246 VAPVRLRRVTGHA-DRSPITLDPTVQRNDRVEITV 279 >gi|330910071|gb|EGH38581.1| flagellar motor rotation protein MotB [Escherichia coli AA86] Length = 256 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|331661626|ref|ZP_08362549.1| putative motility protein [Escherichia coli TA143] gi|331060048|gb|EGI32012.1| putative motility protein [Escherichia coli TA143] Length = 261 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|227884752|ref|ZP_04002557.1| chemotaxis protein [Escherichia coli 83972] gi|227838353|gb|EEJ48819.1| chemotaxis protein [Escherichia coli 83972] gi|307552161|gb|ADN44936.1| putative motility protein [Escherichia coli ABU 83972] Length = 256 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|313646638|gb|EFS11097.1| lateral flagellar motor protein B [Shigella flexneri 2a str. 2457T] gi|332761628|gb|EGJ91908.1| lateral flagellar motor protein B [Shigella flexneri 4343-70] gi|332761679|gb|EGJ91958.1| lateral flagellar motor protein B [Shigella flexneri 2747-71] gi|332764445|gb|EGJ94678.1| lateral flagellar motor protein B [Shigella flexneri K-671] gi|332768577|gb|EGJ98759.1| ompA family protein [Shigella flexneri 2930-71] gi|333008733|gb|EGK28197.1| lateral flagellar motor protein B [Shigella flexneri K-218] gi|333009709|gb|EGK29159.1| lateral flagellar motor protein B [Shigella flexneri VA-6] gi|333022107|gb|EGK41350.1| lateral flagellar motor protein B [Shigella flexneri K-304] Length = 256 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|332341583|gb|AEE54917.1| lateral flagellar motor protein B LafU [Escherichia coli UMNK88] Length = 256 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|159045920|ref|YP_001534714.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12] gi|157913680|gb|ABV95113.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12] Length = 272 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 73/327 (22%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 +IIK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K Sbjct: 9 VIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK----------- 57 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 GI D NP + + + + +NIF Sbjct: 58 -------GIADYFNP----------------------TIPVNRISGGGEGMFGGDNIF-- 86 Query: 135 SNSQQSEHCKNSLTRDSEKG-KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 SL R G ++ +S+ LE EE R+Q Sbjct: 87 --------SDVSLARSGTGGSENSSRSSQLEALRAAEE------------------ARMQ 120 Query: 194 DLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L++ + LSG VA+ + + V T G+++ + DQ +F S+ + Sbjct: 121 ALSEDLLG-LSGESDVAEQLRRHVSTRVTDRGLVVDLFDQGEATVFVPGSTELTLLGKAL 179 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L+ I EV + +SI GH + P RD W +S RA+ A L G +E RI K Sbjct: 180 LKVIHEVFSVVDNPLSITGHVPSQPVVLRERDAWEVSTSRAHVARSTLESYGFAESRIMK 239 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 ++G A + D ++S N R++I++ Sbjct: 240 VAGQADRKPAAYPD-ISSKNNRLEIVL 265 >gi|238793598|ref|ZP_04637221.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC 29909] gi|238727013|gb|EEQ18544.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC 29909] Length = 255 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 9/190 (4%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 DS GK+ K T ++ E P S E+++ K +K +++L++ I S A Sbjct: 45 DSIDGKEQAKETKSNLAVEVPE----PEQSLEEVVD-KSRKEMEELSRIIMQITSAYDAQ 99 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + ++ E G+ I I D + MF +SS++ P +L ++ I I Sbjct: 100 SNLQ---MEVVPQGLRILIQDDKQRDMFQRSSAVLTPFFNRLLAELAPAFNEMDNKIIIT 156 Query: 270 GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTDAS +R+ + +NW LS +RA A++ L+K G+SE R+ +I+ A L ++P+ Sbjct: 157 GHTDASRYRDQVLYNNWNLSGERALMAHKALVKGGLSEGRVLQINAMADQMLLDPAEPLA 216 Query: 329 SANRRIDILV 338 + NRRI+I+V Sbjct: 217 AKNRRIEIMV 226 >gi|309797860|ref|ZP_07692242.1| OmpA family protein [Escherichia coli MS 145-7] gi|308118544|gb|EFO55806.1| OmpA family protein [Escherichia coli MS 145-7] Length = 211 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172 >gi|15799935|ref|NP_285947.1| hypothetical protein Z0291 [Escherichia coli O157:H7 EDL933] gi|15829511|ref|NP_308284.1| hypothetical protein ECs0256 [Escherichia coli O157:H7 str. Sakai] gi|291281074|ref|YP_003497892.1| putative motility protein [Escherichia coli O55:H7 str. CB9615] gi|293413506|ref|ZP_06656155.1| hypothetical protein ECDG_00047 [Escherichia coli B185] gi|331651164|ref|ZP_08352189.1| putative motility protein [Escherichia coli M718] gi|12513001|gb|AAG54555.1|AE005201_8 putative motility protein [Escherichia coli O157:H7 str. EDL933] gi|13359714|dbj|BAB33680.1| putative motility protein [Escherichia coli O157:H7 str. Sakai] gi|209745376|gb|ACI70995.1| putative motility protein [Escherichia coli] gi|209745378|gb|ACI70996.1| putative motility protein [Escherichia coli] gi|209745380|gb|ACI70997.1| putative motility protein [Escherichia coli] gi|209745382|gb|ACI70998.1| putative motility protein [Escherichia coli] gi|290760946|gb|ADD54907.1| Putative motility protein [Escherichia coli O55:H7 str. CB9615] gi|291433564|gb|EFF06537.1| hypothetical protein ECDG_00047 [Escherichia coli B185] gi|323938776|gb|EGB35022.1| OmpA family protein [Escherichia coli E1520] gi|331050905|gb|EGI22957.1| putative motility protein [Escherichia coli M718] Length = 261 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|163856411|ref|YP_001630709.1| flagellar motor protein MotB [Bordetella petrii DSM 12804] gi|163260139|emb|CAP42440.1| flagellar motor component MotB [Bordetella petrii] Length = 312 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 3/154 (1%) Query: 192 LQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+ L +++ S L V N +L + T G+ I I+D + PMF S+ P Sbjct: 121 LERLKRRLDSMLEENPVLKNFRPQLLIDMTTEGLRIQIVDNQKRPMFATGSAEVQPYMRD 180 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+++G VL ISI GHTDA+ + R NW LS DRA ++ Q L+ G++E + Sbjct: 181 ILRELGPVLNELPNKISIAGHTDATQYARGERAYSNWELSADRANASRQELVAGGMAEGK 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +I G + + DP + NRRI ++V +R+ Sbjct: 241 LMRIQGLSSSMSLVKDDPYAAVNRRISLVVLNRR 274 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N+ ++I++K P++ GSWKI YADF+T +MAFFLVMW+I+ + + + +YF Sbjct: 5 NNHRVVIRRKRG-GSRPHHGGSWKIAYADFITAMMAFFLVMWLISIVPKEELRGLAEYF 62 >gi|331656310|ref|ZP_08357272.1| MbhA protein [Escherichia coli TA206] gi|331054558|gb|EGI26567.1| MbhA protein [Escherichia coli TA206] Length = 261 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|26246276|ref|NP_752315.1| hypothetical protein c0378 [Escherichia coli CFT073] gi|26106674|gb|AAN78859.1|AE016756_42 MbhA protein [Escherichia coli CFT073] Length = 262 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 70 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 128 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 129 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 188 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 189 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223 >gi|70734060|ref|YP_257700.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf-5] gi|68348359|gb|AAY95965.1| motility protein, MotB family [Pseudomonas fluorescens Pf-5] Length = 372 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITPDGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKTVPNKISISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ GFA L DP N NRR Sbjct: 205 KPYSGTGDFGNWELSANRANAARRALVAGGYPDPQVARVVGFASSALFDRKDPFNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 7/105 (6%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 EN+Q IIIK K+ A ++ G+WKI +ADF T +MAFFLV+W+++ + K AI Sbjct: 2 ENNQPIIIKRVKRFAGG---HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAG 58 Query: 68 YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 YF +P G + + + I D PE + N ++ I + V Sbjct: 59 YFKDPIGFS-ESGTPYIIDLGGSPELAPDNTLNPEIKSQPQPDKV 102 >gi|309700460|emb|CBI99754.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli ETEC H10407] Length = 296 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 104 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 162 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N DNW LS DRA SA +VL ++G Sbjct: 163 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNLSGDRALSARRVLEEAG 222 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 223 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 257 >gi|281177445|dbj|BAI53775.1| putative motility protein [Escherichia coli SE15] Length = 262 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 70 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 128 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 129 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 188 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 189 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223 >gi|167647023|ref|YP_001684686.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31] gi|167349453|gb|ABZ72188.1| OmpA/MotB domain protein [Caulobacter sp. K31] Length = 299 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 72/128 (56%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++ + T G+ I +IDQ MF ++S P ++L+ I +++ I+I G Sbjct: 161 LSKQIMIDQTPEGLRIQLIDQDGRSMFKENSREPNDRARILLRAIAKIINQLPNRITISG 220 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HT AS A +W LS +RA ++ QVL +GV EDRI ++SG A+ A DP + Sbjct: 221 HTSASAAGKRADSDWALSAERADASRQVLRGAGVDEDRIYQVSGKANSEPLYADDPTLAG 280 Query: 331 NRRIDILV 338 NRRI I++ Sbjct: 281 NRRISIVL 288 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 30/40 (75%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +WK+ YADF+T +MAFFL+MW++N T + K+ I YF P Sbjct: 26 AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAP 65 >gi|83648052|ref|YP_436487.1| flagellar motor protein [Hahella chejuensis KCTC 2396] gi|83636095|gb|ABC32062.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 328 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 5/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D+R PMFD S P +L ++ + +A IS+ GHTDA Sbjct: 142 LLLDITDEGLRIQIVDKRQRPMFDSGRSELQPYFEEILFELAKSIAKVRNKISVSGHTDA 201 Query: 275 SPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 PF + RDN W LS DRA +A + L++ G+ E R++++ G A L DP N N Sbjct: 202 QPF--LGRDNYSNWELSADRANAARRALVEGGLPEGRMARVVGLASSVLFDEKDPYNPVN 259 Query: 332 RRIDILV 338 RRI ILV Sbjct: 260 RRISILV 266 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73 G+WK+ +ADF T +MAFFLV+W+ A + K AI YF +P G Sbjct: 22 GAWKVAFADFATAMMAFFLVLWLSEAATKEQKDAISGYFTDPVG 65 >gi|300936146|ref|ZP_07151085.1| OmpA family protein [Escherichia coli MS 21-1] gi|300458724|gb|EFK22217.1| OmpA family protein [Escherichia coli MS 21-1] Length = 307 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|307611161|emb|CBX00805.1| hypothetical protein LPW_25091 [Legionella pneumophila 130b] Length = 253 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 14/158 (8%) Query: 190 KRLQDLAKKIS------STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 K+L++L +I+ +L+GL K +L + G+ I +ID + PMFD S Sbjct: 88 KKLEELKSEINLSMEKDPSLAGLK-----KQLLMDVVSDGLRIQLIDNQKKPMFDVGSDK 142 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLM 300 PE +L I ++L I+I+GHTDA+P+ N + NW LS RA +A + L+ Sbjct: 143 INPEIEPILANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALI 202 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 K+G+ E+++ ++G++ L +P N NRRI I+V Sbjct: 203 KAGMDENKVMTVTGYSSTVLLDKKNPYNPENRRISIIV 240 >gi|300921970|ref|ZP_07138116.1| OmpA family protein [Escherichia coli MS 182-1] gi|301325438|ref|ZP_07218924.1| OmpA family protein [Escherichia coli MS 78-1] gi|300421640|gb|EFK04951.1| OmpA family protein [Escherichia coli MS 182-1] gi|300847736|gb|EFK75496.1| OmpA family protein [Escherichia coli MS 78-1] Length = 211 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172 >gi|293408386|ref|ZP_06652225.1| conserved hypothetical protein [Escherichia coli B354] gi|291471564|gb|EFF14047.1| conserved hypothetical protein [Escherichia coli B354] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|294491414|gb|ADE90170.1| putative chemotaxis protein [Escherichia coli IHE3034] gi|307628268|gb|ADN72572.1| hypothetical protein UM146_16065 [Escherichia coli UM146] gi|323953128|gb|EGB48996.1| OmpA family protein [Escherichia coli H252] Length = 256 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ VL I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|170681840|ref|YP_001742391.1| hypothetical protein EcSMS35_0284 [Escherichia coli SMS-3-5] gi|170519558|gb|ACB17736.1| lateral flagellar motor protein B [Escherichia coli SMS-3-5] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|323171084|gb|EFZ56733.1| lateral flagellar motor protein B [Escherichia coli LT-68] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|300955691|ref|ZP_07168041.1| OmpA family protein [Escherichia coli MS 175-1] gi|2494512|sp|Q47154|MBHA_ECOLI RecName: Full=Putative protein mbhA gi|984586|dbj|BAA07592.1| MbhA [Escherichia coli W3110] gi|1552798|gb|AAB08650.1| MbhA [Escherichia coli] gi|300317442|gb|EFJ67226.1| OmpA family protein [Escherichia coli MS 175-1] Length = 211 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 138 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 172 >gi|59889800|emb|CAH19156.1| Lateral flagellar motor protein B (MotB-like) [Escherichia coli] gi|284920064|emb|CBG33121.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli 042] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|323191390|gb|EFZ76652.1| lateral flagellar motor protein B [Escherichia coli RN587/1] Length = 307 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|259417151|ref|ZP_05741070.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259346057|gb|EEW57871.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 279 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/316 (23%), Positives = 130/316 (41%), Gaps = 79/316 (25%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83 +WK+ YADF+T +MAFFL+MW++NAT + +K + YF+P G N + Sbjct: 27 AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQGDTM 86 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 F E P+ IG+T + Sbjct: 87 FTEDVKPQNG---------------------IGATKENPT-------------------- 105 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISST 202 D+ + + D ++S EE FL +E ++ + + D+A+ I + Sbjct: 106 ------DASRSQGDTGVADDQQSDEAEEANFLK--IEEALMGRGGESMVSIDMARHIVTR 157 Query: 203 LS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 ++ GL+ + LFET + +F+ S P +L+ + V A Sbjct: 158 VTDEGLIIE------LFET------------EDAKLFENGSERPTILMRDLLRMVARVTA 199 Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 ++I GH ++P W LS RA + ++L G+ RIS+++G+A L Sbjct: 200 SVENNVAIGGHVASTPVVIANNPVWALSHARADATRELLETGGMQAKRISRVTGYADRDL 259 Query: 321 KIASDPMNSANRRIDI 336 + +PM++ N RI+I Sbjct: 260 A-SKNPMSARNNRINI 274 >gi|293403376|ref|ZP_06647467.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412] gi|298378988|ref|ZP_06988869.1| chemotaxis protein MotB [Escherichia coli FVEC1302] gi|291429229|gb|EFF02249.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412] gi|298280101|gb|EFI21605.1| chemotaxis protein MotB [Escherichia coli FVEC1302] Length = 318 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 184 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 245 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 279 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAI 65 +++I Sbjct: 72 ERESI 76 >gi|309786020|ref|ZP_07680649.1| lateral flagellar motor protein B [Shigella dysenteriae 1617] gi|308926131|gb|EFP71609.1| lateral flagellar motor protein B [Shigella dysenteriae 1617] Length = 307 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|218703545|ref|YP_002411064.1| hypothetical protein ECUMN_0293 [Escherichia coli UMN026] gi|300899473|ref|ZP_07117721.1| OmpA family protein [Escherichia coli MS 198-1] gi|218430642|emb|CAR11508.1| flagellar system protein [Escherichia coli UMN026] gi|300356952|gb|EFJ72822.1| OmpA family protein [Escherichia coli MS 198-1] Length = 307 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|331671822|ref|ZP_08372618.1| putative motility protein [Escherichia coli TA280] gi|331070811|gb|EGI42170.1| putative motility protein [Escherichia coli TA280] Length = 318 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 184 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 245 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 279 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAI 65 +++I Sbjct: 72 ERESI 76 >gi|331645436|ref|ZP_08346540.1| putative motility protein [Escherichia coli M605] gi|331045598|gb|EGI17724.1| putative motility protein [Escherichia coli M605] Length = 318 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 184 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 245 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 279 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAI 65 +++I Sbjct: 72 ERESI 76 >gi|312964712|ref|ZP_07778963.1| lateral flagellar motor protein B [Escherichia coli 2362-75] gi|312290733|gb|EFR18611.1| lateral flagellar motor protein B [Escherichia coli 2362-75] Length = 254 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ +V D ++ L E G+ + I D +N MF++ S+ Sbjct: 62 ALLKKKSATELGE-LATSINTIVRDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 120 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL ++G Sbjct: 121 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEEAG 180 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 181 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 215 >gi|306813285|ref|ZP_07447478.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101] gi|305854048|gb|EFM54487.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101] Length = 307 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|99082778|ref|YP_614932.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99039058|gb|ABF65670.1| Chemotaxis motB protein (Motility protein B) [Ruegeria sp. TM1040] Length = 279 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/315 (23%), Positives = 128/315 (40%), Gaps = 77/315 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83 +WK+ YADF+T +MAFFL+MW++NAT + +K + YF+P G N + Sbjct: 27 AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQGDTM 86 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 F E P+ +G+T + +++ QQS+ Sbjct: 87 FTEDVKPQNG---------------------VGATKENPTDASRAQGETGVADDQQSDAA 125 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + R E+ L E ++++ D+A+ I + + Sbjct: 126 EEASFRQIEEA--------------------LMGRGGESMVSI-------DMARHIVTRV 158 Query: 204 S--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + GL+ + LFET + +F+ S P +L+ + V + Sbjct: 159 TDEGLIIE------LFET------------EDATLFEADSERPTVLMRDLLRMVARVTSG 200 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++I GH ++P W LS RA ++L G+S RIS+++GFA L Sbjct: 201 VENNVAIGGHVASTPVVIANNPVWALSHARADQTRELLQAGGMSAKRISRVTGFADRDLA 260 Query: 322 IASDPMNSANRRIDI 336 + +PM+ N RI I Sbjct: 261 -SQNPMSERNNRITI 274 >gi|117622532|ref|YP_851445.1| hypothetical protein APECO1_1739 [Escherichia coli APEC O1] gi|237707752|ref|ZP_04538233.1| MbhA protein [Escherichia sp. 3_2_53FAA] gi|115511656|gb|ABI99730.1| putative motility protein MbhA [Escherichia coli APEC O1] gi|226898962|gb|EEH85221.1| MbhA protein [Escherichia sp. 3_2_53FAA] gi|323958690|gb|EGB54391.1| OmpA family protein [Escherichia coli H263] Length = 261 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ VL I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|218698824|ref|YP_002406453.1| hypothetical protein ECIAI39_0419 [Escherichia coli IAI39] gi|218368810|emb|CAR16558.1| flagellar system protein [Escherichia coli IAI39] Length = 261 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L + V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVEFAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|91209318|ref|YP_539304.1| hypothetical protein UTI89_C0270 [Escherichia coli UTI89] gi|91070892|gb|ABE05773.1| putative motility protein MbhA [Escherichia coli UTI89] Length = 262 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 70 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 128 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ VL I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 129 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 188 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 189 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223 >gi|170021342|ref|YP_001726296.1| hypothetical protein EcolC_3350 [Escherichia coli ATCC 8739] gi|188495907|ref|ZP_03003177.1| lateral flagellar motor protein B [Escherichia coli 53638] gi|169756270|gb|ACA78969.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739] gi|188491106|gb|EDU66209.1| lateral flagellar motor protein B [Escherichia coli 53638] Length = 307 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 38/65 (58%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|215485380|ref|YP_002327811.1| hypothetical protein E2348C_0225 [Escherichia coli O127:H6 str. E2348/69] gi|215263452|emb|CAS07773.1| flagellar system protein MbhA [Escherichia coli O127:H6 str. E2348/69] Length = 261 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ +V D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIVRDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|157157459|ref|YP_001461420.1| hypothetical protein EcE24377A_0264 [Escherichia coli E24377A] gi|157159714|ref|YP_001457032.1| hypothetical protein EcHS_A0258 [Escherichia coli HS] gi|191165724|ref|ZP_03027563.1| putative chemotaxis protein [Escherichia coli B7A] gi|157065394|gb|ABV04649.1| putative chemotaxis protein [Escherichia coli HS] gi|157079489|gb|ABV19197.1| putative chemotaxis protein [Escherichia coli E24377A] gi|190904231|gb|EDV63941.1| putative chemotaxis protein [Escherichia coli B7A] gi|320176694|gb|EFW51731.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC 74-1112] gi|323169560|gb|EFZ55232.1| lateral flagellar motor protein B [Shigella sonnei 53G] Length = 256 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217 >gi|300991173|ref|ZP_07179516.1| OmpA family protein [Escherichia coli MS 200-1] gi|300305611|gb|EFJ60131.1| OmpA family protein [Escherichia coli MS 200-1] gi|324015565|gb|EGB84784.1| OmpA family protein [Escherichia coli MS 60-1] Length = 211 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 19 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 77 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 78 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 137 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 138 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 172 >gi|74310872|ref|YP_309292.1| hypothetical protein SSON_0272 [Shigella sonnei Ss046] gi|293418347|ref|ZP_06660782.1| chemotaxis protein MotB [Escherichia coli B088] gi|73854349|gb|AAZ87056.1| putative motility protein [Shigella sonnei Ss046] gi|291324875|gb|EFE64290.1| chemotaxis protein MotB [Escherichia coli B088] Length = 261 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222 >gi|170767971|ref|ZP_02902424.1| lateral flagellar motor protein B [Escherichia albertii TW07627] gi|170123459|gb|EDS92390.1| lateral flagellar motor protein B [Escherichia albertii TW07627] Length = 222 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 69/122 (56%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 68 MEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMA 127 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL +G+ ED++ ++S A L A +P ++ NRRI+I Sbjct: 128 YKNNIYNNWNLSGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEI 187 Query: 337 LV 338 +V Sbjct: 188 MV 189 >gi|256020246|ref|ZP_05434111.1| hypothetical protein ShiD9_15115 [Shigella sp. D9] gi|332281408|ref|ZP_08393821.1| flagellar motor region [Shigella sp. D9] gi|332103760|gb|EGJ07106.1| flagellar motor region [Shigella sp. D9] Length = 307 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P ++L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKMLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|256024126|ref|ZP_05437991.1| hypothetical protein E4_12175 [Escherichia sp. 4_1_40B] gi|300947286|ref|ZP_07161489.1| OmpA family protein [Escherichia coli MS 116-1] gi|301019019|ref|ZP_07183235.1| OmpA family protein [Escherichia coli MS 196-1] gi|299882424|gb|EFI90635.1| OmpA family protein [Escherichia coli MS 196-1] gi|300453087|gb|EFK16707.1| OmpA family protein [Escherichia coli MS 116-1] gi|315134915|dbj|BAJ42074.1| putative motility protein [Escherichia coli DH1] Length = 256 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217 >gi|325271245|ref|ZP_08137790.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51] gi|324103648|gb|EGC00950.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51] Length = 340 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ G+A L +P N NRR Sbjct: 206 KPYAGTGEFGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRKNPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS 110 +P G + + + + D PE + I+ + T+ S Sbjct: 61 QDPIGFS-ESGTPYVIDLGGSPEMAPDKTINPEVKTEPTQPS 101 >gi|193063256|ref|ZP_03044347.1| putative chemotaxis protein [Escherichia coli E22] gi|192931164|gb|EDV83767.1| putative chemotaxis protein [Escherichia coli E22] gi|323160305|gb|EFZ46258.1| lateral flagellar motor protein B [Escherichia coli E128010] Length = 256 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIMV 217 >gi|16125820|ref|NP_420384.1| chemotaxis MotB protein [Caulobacter crescentus CB15] gi|221234581|ref|YP_002517017.1| chemotaxis motB protein [Caulobacter crescentus NA1000] gi|13422964|gb|AAK23552.1| chemotaxis MotB protein [Caulobacter crescentus CB15] gi|220963753|gb|ACL95109.1| chemotaxis motB protein [Caulobacter crescentus NA1000] Length = 298 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 4/184 (2%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKI---LAMKRKKRLQDLAKKISSTLSGLVA-DNIVKG 214 ++ D+ K E L S++ + LA K + A+ + +L + + K Sbjct: 104 EAQDVTKEAQSSETANLDSASEQALRDALAKKEQDSFASAAQSLRQSLQDMPELAELSKQ 163 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I ++DQ MF ++S P V+L+ + +V+ ++I GHT A Sbjct: 164 ILIDQTPEGLRIQLVDQEGRSMFKENSREPNDRARVLLRAVAKVINQLPNRVTISGHTSA 223 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + F +W LS RA ++ QVL +GV +DR+ ++SG A+ A DP + NRRI Sbjct: 224 NAFGKKQDGDWALSAQRADASRQVLRSAGVDDDRVYQVSGKANSEPLYADDPTLAGNRRI 283 Query: 335 DILV 338 I++ Sbjct: 284 SIVL 287 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 30/40 (75%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +WK+ YADF+T +MAFFL+MW++N T + K+ I YF P Sbjct: 26 AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAP 65 >gi|218688122|ref|YP_002396334.1| hypothetical protein ECED1_0264 [Escherichia coli ED1a] gi|218425686|emb|CAR06478.1| flagellar system protein [Escherichia coli ED1a] Length = 296 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 104 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 162 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 163 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 222 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 223 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257 >gi|149377734|ref|ZP_01895468.1| Flagellar motor protein [Marinobacter algicola DG893] gi|149357960|gb|EDM46448.1| Flagellar motor protein [Marinobacter algicola DG893] Length = 319 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 71/329 (21%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMA-FFLVMWIINATDDDTKKAIEQYFN 70 +Q II+K+K + ++ GSWK+ +ADF T +MA F ++ A+ + + Sbjct: 3 EQPIIVKRKKKVA-AGHHGGSWKVAFADFATAMMAFFLVLWLTATASPEQIR-------- 53 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 A +G F K + E + N VDL+ GS Sbjct: 54 --------AVEGYF------------KDPVGFTEGGSPNPVDLE-GSA------------ 80 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 S+ +S S D+E+S + E+ + L++ + + ++ Sbjct: 81 ---------------SVINES--------SEDIERSDIQIEDQVVEELAQ-TLEQQQMEE 116 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 QDL ++I + +L + T G+ I I+D+ PMFD + + Sbjct: 117 LFQDLKERIEQNET---LQEFKDQLLIDITSEGLRIQIVDRSQRPMFDSGRAELKYYSQD 173 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L ++ + L +SI GHTD++PF NW LS DRA +A + L+ GV +++I Sbjct: 174 ILFELAKTLGTVNNKLSITGHTDSTPFSGRPGYTNWELSADRANTARRALVAGGVRQNQI 233 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ G + L DP NRRI I+V Sbjct: 234 GRVVGLSDSVLFDQDDPQAPVNRRISIIV 262 >gi|324115583|gb|EGC09522.1| OmpA family protein [Escherichia coli E1167] Length = 261 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222 >gi|260450574|gb|ACX40996.1| OmpA/MotB domain protein [Escherichia coli DH1] gi|323943350|gb|EGB39503.1| OmpA family protein [Escherichia coli E482] Length = 261 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 222 >gi|300817251|ref|ZP_07097469.1| OmpA family protein [Escherichia coli MS 107-1] gi|307313501|ref|ZP_07593122.1| OmpA/MotB domain protein [Escherichia coli W] gi|300530227|gb|EFK51289.1| OmpA family protein [Escherichia coli MS 107-1] gi|306906669|gb|EFN37180.1| OmpA/MotB domain protein [Escherichia coli W] gi|323181565|gb|EFZ66985.1| lateral flagellar motor protein B [Escherichia coli 1357] gi|323379881|gb|ADX52149.1| OmpA/MotB domain protein [Escherichia coli KO11] Length = 307 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|258592514|emb|CBE68823.1| Outer membrane protein, OmpA/MotB family [NC10 bacterium 'Dutch sediment'] Length = 308 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 3/127 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + E T G+ + +I+ FD SS P T +L I +A + + GHTDA Sbjct: 152 IRIEITSEGLRVQLIEGNRDSFFDLGSSRLKPVTRQLLAAIAHEVAKLPNQVVVEGHTDA 211 Query: 275 SPFR-NIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 P+ N RD NW LS DRA SA + + + G+ +++S++ G+A L +DP+++AN Sbjct: 212 RPYSGNTGRDYSNWELSTDRANSARRTMEEVGLRRNQVSRVIGYADQHLFNPTDPLDTAN 271 Query: 332 RRIDILV 338 RRI ILV Sbjct: 272 RRISILV 278 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WK+ YADF+T +MA F+V+WI+ + TK+AI YF Sbjct: 29 AWKVAYADFVTAMMALFIVLWIVGQS-KSTKEAIAGYF 65 >gi|260842477|ref|YP_003220255.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009] gi|257757624|dbj|BAI29121.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009] Length = 261 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIMV 222 >gi|331681649|ref|ZP_08382282.1| MbhA protein [Escherichia coli H299] gi|331080851|gb|EGI52016.1| MbhA protein [Escherichia coli H299] Length = 261 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIFTGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|83311678|ref|YP_421942.1| flagellar motor protein [Magnetospirillum magneticum AMB-1] gi|82946519|dbj|BAE51383.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1] Length = 344 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 +L + T G+ I I DQ MF SS P T +L + V+ + I+I GHTD Sbjct: 192 MLVDNTPEGLRIQITDQEGLAMFPSGSSAPYGHTRAMLDLVSRVVRQLPDNRIAISGHTD 251 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 A PFR+ + NW LS DRA + + L+ SGV E RI +I G A +DP NR Sbjct: 252 AIPFRDPSGYTNWELSADRALATRRALIASGVPEGRIDRIVGRADQEPLDKADPKGLRNR 311 Query: 333 RIDILV 338 RI I++ Sbjct: 312 RISIIL 317 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 E Q IIIK KKVA + G+WK+ YADF+T +MAFFL++W++NA ++ + Sbjct: 3 EGGQQIIIKRVKKVAGG---AHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSN 59 Query: 68 YFNP 71 YF P Sbjct: 60 YFAP 63 >gi|110640466|ref|YP_668194.1| hypothetical protein ECP_0259 [Escherichia coli 536] gi|191171446|ref|ZP_03032995.1| putative chemotaxis protein [Escherichia coli F11] gi|110342058|gb|ABG68295.1| putative chemotaxis membrane protein [Escherichia coli 536] gi|190908380|gb|EDV67970.1| putative chemotaxis protein [Escherichia coli F11] gi|312944854|gb|ADR25681.1| hypothetical protein NRG857_01255 [Escherichia coli O83:H1 str. NRG 857C] gi|320197285|gb|EFW71901.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327] Length = 256 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|218557186|ref|YP_002390099.1| hypothetical protein ECS88_0265 [Escherichia coli S88] gi|218363955|emb|CAR01620.1| flagellar system protein [Escherichia coli S88] Length = 296 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 104 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 162 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ VL I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 163 IMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 222 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 223 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257 >gi|308273452|emb|CBX30054.1| hypothetical protein N47_D28630 [uncultured Desulfobacterium sp.] Length = 307 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 2/149 (1%) Query: 192 LQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+ A+KI+ T+S N K + T+ G+ I ++++ FD P+T+ Sbjct: 102 LKSEAEKITKTISQTPEFNKFKDKITVTVTQEGMRIDLLEESEGLFFDIGKIHIKPDTVK 161 Query: 251 VLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +LQ I + LA I I G+TDA P+ + NW LS +RA SA +VL +SG+ +D+I Sbjct: 162 LLQVIAKSHLAKLKNGIIIEGYTDARPYVSSDYTNWELSTERANSARKVLEESGLRKDQI 221 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ GFA +L++ PM+ +NRR+ IL+ Sbjct: 222 LEVRGFADRKLRLPDKPMDFSNRRVSILL 250 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF-DEQNP 89 +WK+ YADF+T +MA F+V+WI+ + + K I YFN G G+ DEQ P Sbjct: 25 AWKVAYADFVTAMMALFIVLWIVGQS-KEVKHYIGAYFNDPGVFTNGRYGGVLPDEQKP 82 >gi|222032078|emb|CAP74817.1| Protein mbhA [Escherichia coli LF82] Length = 261 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 69 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 127 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 128 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 188 MPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 >gi|301643541|ref|ZP_07243583.1| OmpA family protein [Escherichia coli MS 146-1] gi|307136895|ref|ZP_07496251.1| hypothetical protein EcolH7_02026 [Escherichia coli H736] gi|301078041|gb|EFK92847.1| OmpA family protein [Escherichia coli MS 146-1] gi|315616807|gb|EFU97424.1| lateral flagellar motor protein B [Escherichia coli 3431] Length = 307 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 38/65 (58%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|260853484|ref|YP_003227375.1| putative lateral flagellar motor protein [Escherichia coli O26:H11 str. 11368] gi|260866430|ref|YP_003232832.1| putative lateral flagellar motor protein [Escherichia coli O111:H- str. 11128] gi|257752133|dbj|BAI23635.1| predicted lateral flagellar motor protein [Escherichia coli O26:H11 str. 11368] gi|257762786|dbj|BAI34281.1| predicted lateral flagellar motor protein [Escherichia coli O111:H- str. 11128] gi|323158085|gb|EFZ44184.1| lateral flagellar motor protein B [Escherichia coli EPECa14] gi|323178474|gb|EFZ64052.1| lateral flagellar motor protein B [Escherichia coli 1180] Length = 307 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|104783884|ref|YP_610382.1| flagellar motor protein MotB [Pseudomonas entomophila L48] gi|95112871|emb|CAK17599.1| putative flagellar motor MotB protein [Pseudomonas entomophila L48] Length = 341 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 146 ILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFEDILLAMADTIKAVPNKISISGHTDA 205 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ G + +++++ G+A L +P N NRR Sbjct: 206 KPYAGTGDFGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFDRENPFNPVNRR 265 Query: 334 IDILV 338 IDI+V Sbjct: 266 IDIIV 270 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 2/65 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ D ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKRVKRFGDG-HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFG 73 +P G Sbjct: 61 KDPIG 65 >gi|331640759|ref|ZP_08341894.1| putative motility protein [Escherichia coli H736] gi|331037557|gb|EGI09777.1| putative motility protein [Escherichia coli H736] Length = 318 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 126 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 184 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 185 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 244 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 245 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 279 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 38/65 (58%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAI 65 +++I Sbjct: 72 ERESI 76 >gi|149189846|ref|ZP_01868126.1| chemotaxis LafU protein [Vibrio shilonii AK1] gi|148836332|gb|EDL53289.1| chemotaxis LafU protein [Vibrio shilonii AK1] Length = 329 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 134/326 (41%), Gaps = 60/326 (18%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++ K+ D + G+WK+ ADFM LMA FLV+W++ D + +KAI + Sbjct: 7 VVFKRSGRRHDHEYHGGAWKVALADFMIALMALFLVLWVMQVVDKEERKAIVAHLQ-MAS 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 ++ +FD S + IDL+ D +T +++ + Sbjct: 66 VFDKSTGSLFDTSQ-----SISPIDLASDSSVTSR------------------HDSVHTV 102 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 ++ Q + RD + L T ++RL+ Sbjct: 103 TSFFQGD-------RDGPESDSLINGT------------------------FDTQERLEA 131 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LAK ++ + + AD V + T G+ I + D MF + S P +L Sbjct: 132 LAKVVNEMMRQINADGNVDVTV---TPQGLRIVLQDDYKQNMFRRGGSTLTPFFEDLLLA 188 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + V + I GHTDA+ +R + NW LS RA SA Q L+ G+ E R+ ++ Sbjct: 189 LAPVFQRVENPMIISGHTDATQYRKAFSSSSNWELSSSRANSARQTLVAGGMPEQRVLQV 248 Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338 +G + L DP +S NRRI++ + Sbjct: 249 TGMSDRALLNQQDPKSSENRRIELFI 274 >gi|325498393|gb|EGC96252.1| hypothetical protein ECD227_2490 [Escherichia fergusonii ECD227] Length = 256 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL +G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEDAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P +S NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSSGNRRIEIMV 217 >gi|324019871|gb|EGB89090.1| OmpA family protein [Escherichia coli MS 117-3] Length = 211 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 70/122 (57%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 51 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 110 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I Sbjct: 111 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 170 Query: 337 LV 338 +V Sbjct: 171 MV 172 >gi|94312620|ref|YP_585829.1| flagellar motor rotation proteinOmpA/MotB [Cupriavidus metallidurans CH34] gi|93356472|gb|ABF10560.1| OmpA/MotB, protein that enables flagellar motor rotation [Cupriavidus metallidurans CH34] Length = 325 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D +N PMF S+ P +L++IG VL +S+ GHTD+ Sbjct: 146 LLLDITSEGLRIQILDTQNRPMFRTGSAAVEPYMRTILREIGPVLNELPNKVSLSGHTDS 205 Query: 275 SPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + + A NW LS DRA ++ Q L+ G+ E ++ ++ G A +DP+ NR Sbjct: 206 AKYMMGQRAYSNWELSADRANASRQELVAGGMEEGKLLRVLGLADTMPLEKNDPLAPVNR 265 Query: 333 RIDILV 338 RI I+V Sbjct: 266 RISIVV 271 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 19/31 (61%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMA 46 I+ KK P+ SWKI YADFMT +MA Sbjct: 10 IVIKKAKSHAKPHGNHSWKIAYADFMTAMMA 40 >gi|94970509|ref|YP_592557.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94552559|gb|ABF42483.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 264 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 +P L ++ A+++ + L K+I T+ T G+ I +++ Sbjct: 87 MPELKEQLQRAIRKMNNFEQLKKQIEITV----------------TSEGLRIELLESAAG 130 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAY 293 FD S+ P +L+ + L + ISI GHTD+ PF N + NW LS DRA Sbjct: 131 TFFDSGSARPNDSGKELLEMLAHELQNLPNTISIEGHTDSKPFVGNGSYSNWELSADRAN 190 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 +A +++ SGV +++S++ GFA L+ P + +NRRI ILV+ Sbjct: 191 AARRLMQDSGVRGNQVSQVRGFADQNLRKKDAPEDPSNRRITILVQ 236 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTAS 80 +WK+ YADF+T +MA F+V+W++N T K+AI YF +P G T S Sbjct: 23 AWKVAYADFVTAMMALFIVLWLMN-TSKPVKEAISGYFKDPSGTAKKTGS 71 >gi|289207762|ref|YP_003459828.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943393|gb|ADC71092.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 325 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 68/124 (54%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I IID+ N PMFD +SS PLP +L+++ ++ ISI GHTDA Sbjct: 152 LLLDITPEGLRIQIIDRENRPMFDTASSTPLPHADAILRELASLINKVPNRISITGHTDA 211 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 P NW LS DRA +A + L+ G +++++ G A DP + NRRI Sbjct: 212 RPLLRPDYSNWELSADRANAARRALIAGGAESGQVARVVGLADSVPFTRDDPEAAINRRI 271 Query: 335 DILV 338 I+V Sbjct: 272 SIIV 275 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 3/60 (5%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71 Q II+KKKV ++ GSWK+ +ADF +MAFFL++W++ A DD+ + I +YF NP Sbjct: 8 QPIIVKKKVVKGG--HHGGSWKVAFADFAIAMMAFFLLLWLLAALDDEQRAGISEYFQNP 65 >gi|239817126|ref|YP_002946036.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239803703|gb|ACS20770.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 315 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ + I+D N PMFD +S+ +P +L+++G L I++ GHTDA Sbjct: 135 ILIDITTEGLRLQIVDNENRPMFDLASAQVVPHMRAILRELGPTLNELPNKITLSGHTDA 194 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + N R NW LS DRA ++ + L+ G++E+++ ++ G A S+P N NR Sbjct: 195 FVYSNGDRSYGNWELSADRANASRRELVMGGMAENKVLRVVGLADSMHLDRSNPRNPINR 254 Query: 333 RIDILV 338 RI I++ Sbjct: 255 RISIIL 260 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ ++VA + G WKI YADFMT +MAFFLVMW+++ T ++ I ++F Sbjct: 8 VVVRRVAAHGGGGHGGGWKIAYADFMTAMMAFFLVMWLLSNTSPKQREGIAEHF 61 >gi|194427556|ref|ZP_03060104.1| putative chemotaxis protein [Escherichia coli B171] gi|194414326|gb|EDX30600.1| putative chemotaxis protein [Escherichia coli B171] Length = 256 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTQLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIMV 217 >gi|320321894|gb|EFW77990.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea str. B076] gi|320331001|gb|EFW86975.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea str. race 4] gi|330872240|gb|EGH06389.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea str. race 4] Length = 341 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDYENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|330984570|gb|EGH82673.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 344 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|330886588|gb|EGH20249.1| flagellar motor protein MotB [Pseudomonas syringae pv. mori str. 301020] Length = 341 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|289648637|ref|ZP_06479980.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str. 2250] Length = 350 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|289623746|ref|ZP_06456700.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330865884|gb|EGH00593.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 344 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|283133065|dbj|BAI63831.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci] Length = 341 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S + + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTPNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|257482421|ref|ZP_05636462.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009754|gb|EGH89810.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 341 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|71737470|ref|YP_272857.1| flagellar motor protein MotB [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558023|gb|AAZ37234.1| motility protein, MotA family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 341 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|218552836|ref|YP_002385749.1| hypothetical protein ECIAI1_0271 [Escherichia coli IAI1] gi|218693715|ref|YP_002401382.1| hypothetical protein EC55989_0255 [Escherichia coli 55989] gi|218350447|emb|CAU96134.1| flagellar system protein [Escherichia coli 55989] gi|218359604|emb|CAQ97145.1| flagellar system protein [Escherichia coli IAI1] Length = 296 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 70/122 (57%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 136 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 195 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I Sbjct: 196 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEI 255 Query: 337 LV 338 +V Sbjct: 256 MV 257 >gi|320183885|gb|EFW58714.1| Flagellar motor rotation protein MotB [Shigella flexneri CDC 796-83] Length = 256 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GH DA ++N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHIDAMAYKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L + +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMV 217 >gi|298484924|ref|ZP_07003023.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160611|gb|EFI01633.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 341 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLAMADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETSETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|213967914|ref|ZP_03396060.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1] gi|213927257|gb|EEB60806.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1] Length = 341 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEGILLALADTIRSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|283784104|ref|YP_003363969.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168] gi|282947558|emb|CBG87111.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168] Length = 331 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 84/154 (54%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A+ +KK +L + +S S ++ + E G+ + I D +N MF++ S+ Sbjct: 133 ALLKKKSATELGELATSIQSIARKAHMETNLEMEIVPQGLRVLIKDDKNRNMFERGSARI 192 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL ++G+ Sbjct: 193 MPFFQSLLTELAPVFDSLDNKIIITGHTDAMAYKSDIYNNWNLSGDRALSARRVLEQAGM 252 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 253 PEDKVMQVSAMADQMLLDAKNPESAGNRRIEIMV 286 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/128 (19%), Positives = 61/128 (47%), Gaps = 15/128 (11%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M ++ + II++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKAANRRDRGAKTTIIRRQIKKNHGGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKT 60 Query: 61 TKKAI------EQYFNPFG---------KNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 ++ I + FN G + ++ + ++ P+++S K ++ + E Sbjct: 61 ERENIVAALHGQSIFNGGGLAPLNKIGKQTIVPGASSKSVTRSRPDKASPAKEEVKVSEE 120 Query: 106 ITKNSVDL 113 + K + D+ Sbjct: 121 VAKKAKDV 128 >gi|331675914|ref|ZP_08376631.1| putative motility protein [Escherichia coli H591] gi|331076474|gb|EGI47751.1| putative motility protein [Escherichia coli H591] Length = 261 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 70/122 (57%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 101 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 160 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I Sbjct: 161 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 220 Query: 337 LV 338 +V Sbjct: 221 MV 222 >gi|300823443|ref|ZP_07103573.1| OmpA family protein [Escherichia coli MS 119-7] gi|300524061|gb|EFK45130.1| OmpA family protein [Escherichia coli MS 119-7] gi|320201151|gb|EFW75734.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B] Length = 256 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 70/122 (57%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 96 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 155 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I Sbjct: 156 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 215 Query: 337 LV 338 +V Sbjct: 216 MV 217 >gi|302062274|ref|ZP_07253815.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato K40] Length = 341 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIRSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|209917443|ref|YP_002291527.1| hypothetical protein ECSE_0251 [Escherichia coli SE11] gi|209910702|dbj|BAG75776.1| putative motility protein [Escherichia coli SE11] Length = 262 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 70/122 (57%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 102 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 161 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I Sbjct: 162 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 221 Query: 337 LV 338 +V Sbjct: 222 MV 223 >gi|323976251|gb|EGB71344.1| OmpA family protein [Escherichia coli TW10509] gi|327254574|gb|EGE66190.1| lateral flagellar motor protein B [Escherichia coli STEC_7v] Length = 307 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 115 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 173 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL +G Sbjct: 174 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEDAG 233 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 234 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|28872066|ref|NP_794685.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|301384434|ref|ZP_07232852.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato Max13] gi|302132278|ref|ZP_07258268.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855319|gb|AAO58380.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331014600|gb|EGH94656.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 341 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIRSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|85710173|ref|ZP_01041238.1| flagellar motor component [Erythrobacter sp. NAP1] gi|85688883|gb|EAQ28887.1| flagellar motor component [Erythrobacter sp. NAP1] Length = 319 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IA 281 GI I ++D + MF ++I + +L+ IGEVL + +RGHTD+ P+R+ I Sbjct: 164 GIRIDLVDDADFSMFALGTTILTQDARGLLEVIGEVLEAQRTPLILRGHTDSLPWRDGIT 223 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +NW LS RA + Q L+ SG+ +R ++I G A IA +P + NRRI +L+ ++ Sbjct: 224 ANNWSLSAGRAEATRQALIASGLEANRFARIEGVADTEPLIADNPADPRNRRISLLLLEQ 283 Query: 342 Q 342 Q Sbjct: 284 Q 284 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--- 71 II+KK ++ G+WK+ YADF+T +MAFFL++W++ AT+++ ++ I YF P Sbjct: 13 IIVKKVTIAQGDGHHGGAWKVAYADFVTAMMAFFLLLWLLGATEENQRRGIADYFAPTLV 72 Query: 72 ------FGKNLMTASKGIFDEQNPPERSSQN 96 G + M + D N P Q Sbjct: 73 KTRQQSAGADGMLGGSSLTDVDNYPNAQGQT 103 >gi|114330218|ref|YP_746440.1| flagellar motor protein MotB [Nitrosomonas eutropha C91] gi|114307232|gb|ABI58475.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91] Length = 314 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 3/157 (1%) Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +++L+ L +I + S V + +L + T G+ I I+D++N PMF + P Sbjct: 124 REQLEKLKARIEDAINSNPVLNKFKSQLLLDITSEGLRIQIVDEKNRPMFAIGKAELQPY 183 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVS 305 T ++L +IG++L IS+ GHTDA+P+ + + NW LS DRA ++ + L+ G++ Sbjct: 184 TKMILHEIGKMLNDVGNKISLSGHTDATPYPSGEKSYSNWELSADRANASRRELIAGGMN 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +++ ++ G + + D + NRRI I+V +++ Sbjct: 244 PEKMLRVVGLSSAVMFDKEDSFSPFNRRISIIVMNKK 280 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 30/39 (76%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 G+WKI YADF+T +MAFFL+MW++ +T K+ I +YF Sbjct: 25 GAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGISEYF 63 >gi|331666564|ref|ZP_08367438.1| putative motility protein [Escherichia coli TA271] gi|331065788|gb|EGI37672.1| putative motility protein [Escherichia coli TA271] Length = 307 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 70/122 (57%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 147 MEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMA 206 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I Sbjct: 207 YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEI 266 Query: 337 LV 338 +V Sbjct: 267 MV 268 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 39/65 (60%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAI 65 +++I Sbjct: 61 ERESI 65 >gi|330965971|gb|EGH66231.1| flagellar motor protein MotB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 341 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIRSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|86136711|ref|ZP_01055289.1| chemotaxis protein MotB [Roseobacter sp. MED193] gi|85826035|gb|EAQ46232.1| chemotaxis protein MotB [Roseobacter sp. MED193] Length = 277 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/313 (22%), Positives = 130/313 (41%), Gaps = 71/313 (22%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW++NAT + + KG+ D +P Sbjct: 27 AWKVAYADFVTAMMAFFLLMWLLNATTEKQR------------------KGLADYFSP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT-RD 150 S+ L S +Q +++F QS + + D Sbjct: 67 ------------------SIPLSRISGGGNGAFQ--GDSMFTEDIQPQSGTGASDINPMD 106 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 ++K + +D EK+ +E++ F + I L G ++ Sbjct: 107 AQKAQGETGVSDAEKA--EEDSKF----------------------RAIEEQLQGRGGES 142 Query: 211 IV-----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +V + ++ T G+++ + + +F+ + P P +++ + V A T Sbjct: 143 MVSVEMSRHIITRVTDEGLIVELFETDGVSLFEAGGAEPTPLFRDLVRMVARVSASVTND 202 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I+I GH + P W +S RA A +L G+ RI +I+G A +L + ++ Sbjct: 203 IAISGHIQSHPVVLAQNPVWEMSHARANVARTLLESGGMKSSRIHRITGHADRKLAV-TN 261 Query: 326 PMNSANRRIDILV 338 PM N R++I++ Sbjct: 262 PMAVRNNRVEIIL 274 >gi|330960099|gb|EGH60359.1| flagellar motor protein MotB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 341 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKISISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + AI YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAIAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|330951464|gb|EGH51724.1| flagellar motor protein MotB [Pseudomonas syringae Cit 7] Length = 351 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKISISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGGWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQ 125 +P G + + S + D PE S ++ + + ++V L+ + K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPLEAETAETKAEEVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|296103598|ref|YP_003613744.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058057|gb|ADF62795.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 301 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVA-----DNIVKGVLFETTRTGILISIIDQRNT 234 K +I ++ + KR + L K+ L ++ +N +L T G+LI I D ++ Sbjct: 98 KGQIASIDKHKRFESL-KQAKEKLQKMIETDPRLNNFKSNILLNLTNDGLLIQITDSQDR 156 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRA 292 PMF S +P +LQ + +L +S+ GHTD+ P+ + NW LS RA Sbjct: 157 PMFRVGSELPESYMNGILQALVPLLQELPNALSLTGHTDSLPYAGGDGGYSNWELSAGRA 216 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +A +VL++ G++++R ++ G A + P ++ NRRI ILV R Sbjct: 217 NAARRVLVRGGLNDERFLRVIGTASRMPLENTSPDSAVNRRISILVLSR 265 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 22/39 (56%), Positives = 30/39 (76%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 G+WKI YADFMT +MAFFLVMW+++ + D ++ I YF Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLSQSTDMERELIADYF 61 >gi|218550065|ref|YP_002383856.1| hypothetical protein EFER_2750 [Escherichia fergusonii ATCC 35469] gi|218357606|emb|CAQ90245.1| flagellar system protein [Escherichia fergusonii ATCC 35469] Length = 296 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 104 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAK 162 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL +G Sbjct: 163 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNLSGDRALSARRVLEDAG 222 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 223 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257 >gi|114320660|ref|YP_742343.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227054|gb|ABI56853.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 285 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 VL + T G+ I ++D N PMFD S+ +L + VL + I GHTDA Sbjct: 141 VLMDMTPDGLRIQLVDAENRPMFDLGSARLRSYAAEILSGLTGVLERVPNALRISGHTDA 200 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 PF RD NW LS DRA +A + L SG++ R++++ G A + +PM NR Sbjct: 201 RPFVG-RRDYTNWELSTDRANAARRTLTASGIAPYRVAQVVGVAETQPLDPDNPMAPVNR 259 Query: 333 RIDILV 338 RI I++ Sbjct: 260 RISIIL 265 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NP 71 GSWK+ +ADFMT + A FLV+WI+ A DD + A+ YF NP Sbjct: 27 GSWKVAFADFMTAMFAMFLVLWIVTAMDDPQRAAVADYFRNP 68 >gi|162147455|ref|YP_001601916.1| chemotaxis protein motB (motility protein B) [Gluconacetobacter diazotrophicus PAl 5] gi|209545564|ref|YP_002277793.1| OmpA/MotB domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786032|emb|CAP55614.1| putative chemotaxis protein motB (Motility protein B) [Gluconacetobacter diazotrophicus PAl 5] gi|209533241|gb|ACI53178.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 368 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 7 KNQENDQFIIIKKKVAID--DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 KN Q I+I++ D + ++ G+WKI YADFMT +M+FFLVMW++NAT D+ ++ Sbjct: 3 KNDNKQQPILIRRSDGEDSEEGGHSGGAWKIAYADFMTAMMSFFLVMWLLNATTDEQRRG 62 Query: 65 IEQYFNPF 72 I Q+FNP Sbjct: 63 IAQFFNPM 70 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V + R I I + D NTPMFD S+ P +L +I LA E ISI G+TD Sbjct: 203 VSIQIGRDDIRIELRDSNNTPMFDSGSATPNRLGKQMLAQIAAWLAPMPEPISIVGYTDG 262 Query: 275 SPF---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 +P+ R NW LS+ RA A + L+++G + I +SG + L + SDP + N Sbjct: 263 APYHVGRQWGMSNWTLSVMRADHARETLVQAGYPDRNILDVSGRSDRDLALPSDPSGAGN 322 Query: 332 RRIDILVEDR 341 RR+ +++ R Sbjct: 323 RRVVLIMHRR 332 >gi|302189799|ref|ZP_07266472.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae 642] Length = 349 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 264 Query: 334 IDILVEDRQG 343 IDI+V R+ Sbjct: 265 IDIVVLTRKA 274 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 6/134 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ + K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIETETAETKAEAVEQE 119 Query: 126 RLENNIFYLSNSQQ 139 RLE + L N Q Sbjct: 120 RLEMLLQELQNKVQ 133 >gi|330807221|ref|YP_004351683.1| Chemotaxis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375329|gb|AEA66679.1| Chemotaxis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 344 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITPNGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ +++++++ G+A L DP N NRR Sbjct: 205 KPYVGKGDFGNWELSANRANAARRALVAGSYPDEQVARVVGYASSALFDRKDPFNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 6/67 (8%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 EN+Q IIIK K++A ++ G+WKI +ADF T +MAFFLV+W+++ + K AI Sbjct: 2 ENNQPIIIKRVKRIAAG---HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAG 58 Query: 68 YF-NPFG 73 YF +P G Sbjct: 59 YFKDPVG 65 >gi|304321119|ref|YP_003854762.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503] gi|303300021|gb|ADM09620.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503] Length = 254 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 9/152 (5%) Query: 196 AKKISSTL------SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 AK I S++ SGL D+ + V T GI++ +ID +F SS P PE Sbjct: 106 AKAIESSVKEMAKASGL--DDADERVRVTVTDEGIVVQLIDAEGKSLFPVGSSTPSPELR 163 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V+++ +A + I I GHTD+ ++ A N+ LS DRA +A ++L+++GV + R+ Sbjct: 164 VLVKAAASAVAAGGKKIRIVGHTDSRQYQGYAYSNFELSADRANAARRLLIEAGVDDSRL 223 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++I+G A R I +P + ANRRI I++ DR Sbjct: 224 TEITGRA-DREPITDNPADPANRRIAIVLLDR 254 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+ II +K++ + + ++ G WK+ YADF+T +MAFFL+MW++NAT ++ +K I YF Sbjct: 3 DNNPTIIKRKRITVVNG-HHGGQWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYF 61 Query: 70 NP 71 P Sbjct: 62 AP 63 >gi|237798269|ref|ZP_04586730.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021121|gb|EGI01178.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 346 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDAQVARVVGYASSALYDHENPTNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|330978961|gb|EGH78020.1| flagellar motor protein MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 346 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 6/134 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ + K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPIEAENAETKAEAVEQE 119 Query: 126 RLENNIFYLSNSQQ 139 RLE + L N Q Sbjct: 120 RLEMLLQELQNKVQ 133 >gi|115524024|ref|YP_780935.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115517971|gb|ABJ05955.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 272 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 69/309 (22%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M +L+AFF+++ + D D K + + FG + G+ ++ P Sbjct: 14 GWFVTFADLMALLLAFFVMLVAFSTQDKDKLKVVAGSMRDAFGVQPDSRYAGVLEQDGVP 73 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 I+ + + STNQ SN+ + N D Sbjct: 74 ---------------ISGKLKNASLVSTNQA-------------SNTPSPDEGDN----D 101 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 S K K E F + + ++ LQD+ + Sbjct: 102 SAK--------------TKAEREF-------ALASASLRQALQDMPELT----------E 130 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 I K V+FE T+ G+ + I DQ MF + S +P T +++Q++ L + ISI G Sbjct: 131 ISKNVIFEETKDGLNMEITDQDGRSMFAEGSKVPYDRTRLLVQRLAAPLRATPLRISIAG 190 Query: 271 HTDASPFRNIARDNWR---LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 HT A I R ++ LS DRA + Q+L + GV +I +SG A + D Sbjct: 191 HTSAGVV--IGRSDYNAFDLSSDRANAVRQILEREGVPTSQIYAVSGRADSQPLFPDDAT 248 Query: 328 NSANRRIDI 336 SANRR+ I Sbjct: 249 LSANRRVTI 257 >gi|51597618|ref|YP_071809.1| hypothetical protein YPTB3318 [Yersinia pseudotuberculosis IP 32953] gi|51590900|emb|CAH22556.1| Putative chemotaxis membrane protein [Yersinia pseudotuberculosis IP 32953] Length = 264 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 69/299 (23%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN---PPERSSQNKIDL 100 +MA F+V+WI+ ++ ++ I N K IF +Q+ P +S L Sbjct: 1 MMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPSKSKSGGGKL 51 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 S NS+D N Q E N E K L + Sbjct: 52 S-------NSID----------------------GNEQAKETKSNLAIEVPEPEKSLEEV 82 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 D K + +++L++ I S A N + E Sbjct: 83 VD------------------------KSRHEMEELSRIIMQITS---AYNAQSNLQMEVV 115 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN- 279 G+ I I D + MF +SS++ P +L ++ I I GHTDAS +R+ Sbjct: 116 PQGLRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQ 175 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +NW LS +RA A++ L+ G+ E R+ +I+ A L +DP+ + NRRI+I+V Sbjct: 176 LLYNNWNLSGERALMAHKALVNGGLDEGRVLQINTMADQMLLDPTDPLAAKNRRIEIMV 234 >gi|289672567|ref|ZP_06493457.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae FF5] Length = 240 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 91 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 150 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 151 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 210 Query: 334 IDILV 338 IDI+V Sbjct: 211 IDIVV 215 >gi|330939854|gb|EGH43087.1| flagellar motor protein MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 333 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 132 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 191 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 192 TPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQNPTNPINRR 251 Query: 334 IDILV 338 IDI+V Sbjct: 252 IDIVV 256 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89 G+WKI +ADF T +MAFFLV+W++++ + A+ YF +P G + + S + D Sbjct: 9 GAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFS-DSGSPYVIDLGGS 67 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFYLSNSQQ 139 PE S ++ + + ++V ++ + K + +RLE + L N Q Sbjct: 68 PEMSPNQTLNPEVQTTPSPDTVPIEAENAETKAEAVEQERLEMLLQELQNKVQ 120 >gi|149184216|ref|ZP_01862534.1| OmpA/MotB [Erythrobacter sp. SD-21] gi|148831536|gb|EDL49969.1| OmpA/MotB [Erythrobacter sp. SD-21] Length = 276 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 197 KKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 K+I+S +S ++ + +++ V T TGI I ++D N MF +++ + + Sbjct: 126 KRINSRVSKMIESDKELKRLMRQVRMIDTTTGIRIDLVDDANFSMFSLGTTVLTNDAREL 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L I LA I++RGHTDA +R +R +NW LS RA Q L++ G++++R Sbjct: 186 LVVIAAALAPEGGKITVRGHTDALRYRYPSRVNNWSLSAGRAEETRQTLIREGINQERFR 245 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 +I G A I +P + NRRI I +ED Sbjct: 246 RIEGVAATEPLIGDNPSDPRNRRISISLED 275 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 9/101 (8%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G N+ II KK+ + + ++ G+WK+ YADF+T +MAFFL++W++ AT +D +K Sbjct: 3 GAATGRNEPAPIIVKKITVVEAGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEDQRKG 62 Query: 65 IEQYFNP---------FGKNLMTASKGIFDEQNPPERSSQN 96 + YF P G + M + D N P + Q Sbjct: 63 LADYFTPTLVKTKEQSAGSDGMLGGASLTDVDNYPHAAGQT 103 >gi|304311521|ref|YP_003811119.1| Chemotaxis protein MotB [gamma proteobacterium HdN1] gi|301797254|emb|CBL45474.1| Chemotaxis protein MotB [gamma proteobacterium HdN1] Length = 459 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ + T G+LI ++D+ PMFD + P +L+ I + L + +SI GHTDA Sbjct: 178 IIIKITEDGLLIEVVDKDKRPMFDLGKTSVKPYFNSILKAIAKTLEGTHNPLSISGHTDA 237 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 PF NW LS DRA +A + L+K+G+ +++I+++ G A L P NRR Sbjct: 238 VPFTESENYTNWELSSDRANAARRALLKAGMKKEQIARVVGLADSILFDEKHPDAPINRR 297 Query: 334 IDILV 338 I IL Sbjct: 298 ISILA 302 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73 G+WK+ +ADF+T +MA FLV+W+I +T K AI YF NP G Sbjct: 25 GAWKVAFADFVTAMMALFLVLWLIESTTQAEKLAISMYFSNPTG 68 >gi|238790287|ref|ZP_04634061.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii ATCC 33641] gi|238721637|gb|EEQ13303.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii ATCC 33641] Length = 241 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 9/190 (4%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 DS G++ K T ++ E P S E ++ K ++ +++L++ I S A Sbjct: 31 DSIDGQEQAKETKSNLAVEVPE----PEQSLEDVVD-KSRQEMEELSRIIMQITSAYDAQ 85 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + + E G+ I I D + MF +SS++ P +L ++ I I Sbjct: 86 S---NLHMEVVPQGLRILIQDDKQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKIIIT 142 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTDAS +R+ +NW LS +RA A++ L+K G+++ R+ +I+ H L ++P+ Sbjct: 143 GHTDASRYRDQELYNNWNLSGERALMAHKALVKGGLADGRVLQINAMGHQMLLHETEPLA 202 Query: 329 SANRRIDILV 338 + NRRI+I++ Sbjct: 203 AKNRRIEIMI 212 >gi|313672698|ref|YP_004050809.1| ompa/motb domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939454|gb|ADR18646.1| OmpA/MotB domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 276 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 3/146 (2%) Query: 196 AKKISSTLSGLVADNIVK---GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +K+ +L G+V + + ++ TT GI I +ID+ P+F S+ VL Sbjct: 111 GEKVKESLMGVVKTQLSEFSDQIMVSTTPEGIRIDVIDKTGNPIFSSGSASLNTNGKAVL 170 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + + L + I I GHTDA +R NW LS+ RA +A L+ +G ++IS + Sbjct: 171 KVLANTLNELSNKIVIEGHTDAMTYRGDKNGNWDLSIQRANNARAELLLNGYDANKISSV 230 Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338 +G+A R + +P + NRRI L+ Sbjct: 231 AGYAATRPIVKDNPNDPMNRRISFLI 256 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------GKNLMTASKG-I 83 G+WKI YADF+T +MAFFLVMW++N T ++ + I YF F G ++M G Sbjct: 24 GAWKIAYADFVTAMMAFFLVMWLLNMTSEEKRAKIAMYFRTFSIFEKAGGSIMEGGTGKP 83 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKN 109 F+ + KI++ I T+N Sbjct: 84 FEADKKGQAQIVEKIEVEIAATATEN 109 >gi|312958642|ref|ZP_07773162.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gi|311287185|gb|EFQ65746.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 339 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + FE T G+ I I D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ISFEITPEGLRIQITDAANRPMFDSGSARLKPYFEDILLAMADTIKTVPNKISISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ + +++++ GFA +L DP N ANRR Sbjct: 205 KPYAGQGDFGNWELSANRANAARRALVAGSYPDPQVARVVGFASSQLFDHKDPFNPANRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 7/108 (6%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 EN+Q IIIK K+ A ++ G+WKI +ADF T +MAFFLV+W+++ + K AI Sbjct: 2 ENNQPIIIKRVKRFAAG---HHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAG 58 Query: 68 YF-NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114 YF +P G + + + + D PE + + I+ + + + ++ Sbjct: 59 YFKDPIGFS-ESGTPFVIDLGGSPELAPERTINPEVKTEAPQEKIPIE 105 >gi|77456741|ref|YP_346246.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf0-1] gi|77380744|gb|ABA72257.1| chemotaxis MotB protein [Pseudomonas fluorescens Pf0-1] Length = 355 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITPNGLRIQIMDAENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ N NW LS +RA +A + L+ + +++++ G+A L +P N NRR Sbjct: 205 KPYVGNGDFGNWELSANRANAARRALVAGSYPDSQVARVVGYASSALFDKENPFNPVNRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ I ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKRVKRIAGG-HHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 -NPFG 73 +P G Sbjct: 61 KDPVG 65 >gi|330873802|gb|EGH07951.1| flagellar motor protein MotB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 341 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ILFEITQDGLRIQIMDADNRPMFDSGSARLKPYFEDILLALADTIKSVPNKISISGHTDA 204 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF N NW LS +RA +A + L+ E++++++ G A L +P NRR Sbjct: 205 TPFVGNNGFGNWELSANRANAARRALVAGTYPEEQVARVVGHASSVLYDRDNPTGPINRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 -NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---Q 125 +P G + + S + D PE S ++ + + ++V ++ ++ K + + Sbjct: 61 KDPVGFS-DSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSPDTVPIEAETSETKAEAVEQE 119 Query: 126 RLE 128 RLE Sbjct: 120 RLE 122 >gi|255021445|ref|ZP_05293492.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] gi|254969150|gb|EET26665.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] Length = 307 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L T G+ I ++D PMF S++ P + I L ISI GHTDA Sbjct: 148 LLISITPEGLRIQVVDSSKRPMFANGSTVLEPYARTIFSAIAPTLDELPNRISITGHTDA 207 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + N R N+ LS RA S Q+L++SG++E+++ ++ G L + DP + NR Sbjct: 208 LRYLNEGRGYSNFNLSAGRANSVRQILVQSGLAENKVLRVVGMGSAVLFVPKDPDSPLNR 267 Query: 333 RIDILVEDR 341 R+ I+V R Sbjct: 268 RVSIVVLSR 276 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 10 ENDQFIIIKKKVAIDDTPN-NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 E Q I+IK+ I T + G+WKI YADF+T LMAFFL+MW++ +T T + I Q+ Sbjct: 5 EKSQPIVIKR---IKKTAGGHGGAWKIAYADFVTALMAFFLLMWLLGSTTKATLQGIAQW 61 Query: 69 F-NPFGKNLM 77 F NP +LM Sbjct: 62 FKNPEQVSLM 71 >gi|300697987|ref|YP_003748648.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum CFBP2957] gi|299074711|emb|CBJ54269.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum CFBP2957] Length = 314 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFGNASAEVQPYMRTILRELGAALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|121600109|ref|YP_994715.1| flagellar motor protein [Burkholderia mallei SAVP1] gi|124386114|ref|YP_001027662.1| putative chemotaxis MotB protein [Burkholderia mallei NCTC 10229] gi|121228919|gb|ABM51437.1| flagellar motor protein [Burkholderia mallei SAVP1] Length = 245 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 184 LAMKRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L + + RL DL K+ + + + + + ++T G+ I I+D + PMF SS Sbjct: 33 LERREQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSD 92 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 P +L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ Sbjct: 93 AVEPYMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELI 152 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G+ E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 153 AGGMDEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 194 >gi|307824077|ref|ZP_07654304.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307734861|gb|EFO05711.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 302 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 3/129 (2%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E T G+ I I+D +N PM+ +S+ P+ ++L+ + V+ +S+ GHTDA P Sbjct: 151 LEITSEGLRILIVDAQNRPMYKLASAETEPQIKLILRALAPVINELPNKVSLNGHTDARP 210 Query: 277 FRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSANRR 333 F + NW LS DRA +A L ++G++E++I ++ G + ++P++ NRR Sbjct: 211 FPPNQKKYTNWELSSDRANAARYELNQAGLAEEKILRVIGLSSSVPYSATAEPLDPINRR 270 Query: 334 IDILVEDRQ 342 I I+V +++ Sbjct: 271 ISIIVMNKK 279 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-N 70 DQ II KKV ++ G+WK+ YADF+T +MAFFL+MW++ T + +K I +YF + Sbjct: 3 DQQPIIVKKVKKGGHAHHGGAWKLAYADFVTAMMAFFLLMWLLGTTSEPERKGIAEYFQD 62 Query: 71 PF 72 PF Sbjct: 63 PF 64 >gi|238563173|ref|ZP_04610426.1| flagellar motor protein [Burkholderia mallei GB8 horse 4] gi|251767164|ref|ZP_04819981.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20] gi|238521179|gb|EEP84632.1| flagellar motor protein [Burkholderia mallei GB8 horse 4] gi|243063600|gb|EES45786.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20] Length = 260 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 184 LAMKRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L + + RL DL K+ + + + + + ++T G+ I I+D + PMF SS Sbjct: 48 LERREQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSD 107 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 P +L++IG+ L I ++GHTDA P+ + NW LS DRA ++ + L+ Sbjct: 108 AVEPYMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELI 167 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G+ E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 168 AGGMDEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 209 >gi|83747601|ref|ZP_00944638.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551] gi|207738644|ref|YP_002257037.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum IPO1609] gi|83725781|gb|EAP72922.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551] gi|206592012|emb|CAQ58918.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum IPO1609] Length = 314 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGSALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|300694372|ref|YP_003750345.1| chemotaxis protein motb (motility protein b), flagellar motor protein [Ralstonia solanacearum PSI07] gi|299076409|emb|CBJ35725.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum PSI07] Length = 314 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGAALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|126417355|gb|ABO13880.1| MotB [Ralstonia solanacearum] Length = 314 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYLRTILRELGAALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|311695399|gb|ADP98272.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 246 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D+ PMFD + + +L ++ + L +SI GHTD+ Sbjct: 65 LLIDITDEGLRIQIVDRSGRPMFDSGRAELKYYSQDILFELAKTLGSVNNKLSITGHTDS 124 Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS DRA +A + L+ GV + +I+++ G + L DP NRR Sbjct: 125 TPFSGRPGYTNWELSADRANTARRALVAGGVRQQQIARVVGLSDSVLFDKEDPNAPVNRR 184 Query: 334 IDILV 338 I I+V Sbjct: 185 ISIIV 189 >gi|218886185|ref|YP_002435506.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757139|gb|ACL08038.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 241 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 99/314 (31%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 GSWK+ YADF+T +MAFFL+MWI+N T +TK+A+ YF + + +FD N Sbjct: 5 GSWKVAYADFVTAMMAFFLLMWILNMTPPETKQALAGYF--------STERSLFDSSN-- 54 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + NN F Sbjct: 55 ---------------------------------VSPVANNPFV----------------- 64 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 +G D + D + S ++ +Y +A K K+ + +A I SG+ AD+ Sbjct: 65 --QGVDKLDTRDFKVSETEKSHY---------AIAQKLKQMM--MADAIPQNASGISADD 111 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + G+L+ + + MF S+ +PE VL ++ ++L + +RG Sbjct: 112 V-----------GVLLRV---NSDVMFKAGSAELVPEGSRVLDEVIKILREYNLYLMVRG 157 Query: 271 HTD------ASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIA 323 H+D SP+ + NW LS RA +A + +++ G+ R+ I+ ++ Sbjct: 158 HSDSGEVAAGSPYPS----NWELSGARAAAAVRYIIEHGGIKPTRLRGIAYADTRPMEPN 213 Query: 324 SDPMN-SANRRIDI 336 + P + S NRR++ Sbjct: 214 TTPESRSKNRRVEF 227 >gi|126443721|ref|YP_001061208.1| chemotaxis LafU protein [Burkholderia pseudomallei 668] gi|126223212|gb|ABN86717.1| chemotaxis LafU protein [Burkholderia pseudomallei 668] Length = 311 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 80/312 (25%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WK+ +ADF LMA F+V+W++N T + +K + G+ GIF+ Sbjct: 27 GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIA--GRPFFDGGVGIFE----- 79 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 QR + ++QQ + + R Sbjct: 80 ----------------------------------QRSRKPVVAPFDAQQPDRMRR---RT 102 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS--STLSGLVA 208 S + E++I+ L + + LA R+ D A ++ ++ + Sbjct: 103 SGAAR--------ERTIDS--------LQQRRALA----ARIMDEASRLGMDGNVATAIN 142 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 D+ V+ + ++ + G+ D N P I +L + VL T + I Sbjct: 143 DDGVRITIHDSDKQGMFERRSDALNPPF------------IRLLTALVPVLGTVTNKMVI 190 Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 GHTDA+ + + + +NW LS RA A QVL G+ R+ +ISG + +P Sbjct: 191 VGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMDAQRMFQISGMGDSVPAVPDNP 250 Query: 327 MNSANRRIDILV 338 + NRR+++L+ Sbjct: 251 NHDMNRRVELLL 262 >gi|134280878|ref|ZP_01767588.1| chemotaxis LafU protein [Burkholderia pseudomallei 305] gi|254182925|ref|ZP_04889518.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655] gi|254299720|ref|ZP_04967169.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e] gi|125657184|gb|ABN48672.1| chemotaxis LafU protein [Burkholderia pseudomallei] gi|134247900|gb|EBA47984.1| chemotaxis LafU protein [Burkholderia pseudomallei 305] gi|157809631|gb|EDO86801.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e] gi|184213459|gb|EDU10502.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655] Length = 311 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 80/312 (25%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WK+ +ADF LMA F+V+W++N T + +K + G+ GIF+ Sbjct: 27 GAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAAEIA--GRPFFDGGVGIFE----- 79 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 QR + ++QQ + + R Sbjct: 80 ----------------------------------QRSRKPVVAPFDAQQPDRMRR---RT 102 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS--STLSGLVA 208 S + E++I+ L + + LA R+ D A ++ ++ + Sbjct: 103 SGAAR--------ERTIDS--------LQQRRALA----ARIMDEASRLGMDGNVATAIN 142 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 D+ V+ + ++ + G+ D N P I +L + VL T + I Sbjct: 143 DDGVRITIHDSDKQGMFERRSDALNPPF------------IRLLTALVPVLGTVTNKMVI 190 Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 GHTDA+ + + + +NW LS RA A QVL G+ R+ +ISG + +P Sbjct: 191 VGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMDAQRMFQISGMGDSVPAVPDNP 250 Query: 327 MNSANRRIDILV 338 + NRR+++L+ Sbjct: 251 NHDMNRRVELLL 262 >gi|299069796|emb|CBJ41076.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum CMR15] Length = 314 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGVALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMQPEKVARVVGLEASVPLDKTDAFNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|207723077|ref|YP_002253485.1| chemotaxis motility protein b [Ralstonia solanacearum MolK2] gi|206588269|emb|CAQ18823.1| probable chemotaxis motility protein b [Ralstonia solanacearum MolK2] Length = 171 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 1 MLIDMTSEGLRIQIVDQQNRPMFANASAEVEPYMRTILRELGSALNDVPNPISLSGHTDA 60 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 61 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 120 Query: 334 IDILV 338 I I+V Sbjct: 121 ISIVV 125 >gi|254473231|ref|ZP_05086629.1| chemotaxis MotB protein [Pseudovibrio sp. JE062] gi|211957952|gb|EEA93154.1| chemotaxis MotB protein [Pseudovibrio sp. JE062] Length = 286 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 53/314 (16%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFD 85 P W + +AD M++L+ FF+++ + D + + + FG +T G+ + Sbjct: 9 PAGAPGWMVTFADLMSLLVCFFVLIISFSVQDKQKLQVVAGSIKDAFGIKQVTKRAGVLE 68 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + P R D++ ++ IT D S +K++ Sbjct: 69 IEGVPLRDFMK--DITYEKQIT--DADFATESHPEKRK---------------------- 102 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + E K D+EK + A+ ++ Q++ + Sbjct: 103 ---QGPEANTHTTKKADIEKP------------RQFATAAVSLRQAFQEMPEITE----- 142 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +++NI+ E T G+ I I+DQ M+ + S P T +L K+ VLA Sbjct: 143 -ISNNII----LEETDEGLNILIVDQEGRSMYPEGSKYPYEITRRLLAKMAPVLAKLPNR 197 Query: 266 ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + I GHT + + W LS DRA +A Q+L + G+ + I + G A + Sbjct: 198 VRITGHTTTGQLITSPSETGWELSADRANTARQILSEYGLPSNNIHSVVGKADTEPLFPN 257 Query: 325 DPMNSANRRIDILV 338 DP +ANRRI IL+ Sbjct: 258 DPYLAANRRISILL 271 >gi|17549629|ref|NP_522969.1| flagellar motor protein MotB [Ralstonia solanacearum GMI1000] gi|17431883|emb|CAD18561.1| probable chemotaxis (motility protein b) transmembrane [Ralstonia solanacearum GMI1000] Length = 314 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTSEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGVALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 204 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|126176136|ref|YP_001052285.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|125999341|gb|ABN63416.1| OmpA/MotB domain protein [Shewanella baltica OS155] Length = 306 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 +A+NI ++ + GI I I D N MF + S+ P +L +G +L + T + Sbjct: 143 MAENIAVTIVPQ----GIRILIHDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSM 198 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTD++P+ NW LS +RA A +VL + GV D++ +++G A IA+D Sbjct: 199 VISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQVIQVTGMADQIPYIATDT 258 Query: 327 MNSANRRIDILV 338 +ANRRI+ L+ Sbjct: 259 AAAANRRIEALI 270 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70 IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 8 IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67 Query: 71 PFG 73 P G Sbjct: 68 PTG 70 >gi|304412488|ref|ZP_07394094.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307307147|ref|ZP_07586885.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|304349130|gb|EFM13542.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306910386|gb|EFN40817.1| OmpA/MotB domain protein [Shewanella baltica BA175] Length = 306 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 4/132 (3%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 +A+NI ++ + GI I I D N MF + S+ P +L +G +L + T + Sbjct: 143 MAENIAVTIVPQ----GIRILIHDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSM 198 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTD++P+ NW LS +RA A +VL + GV D++ +++G A IA+D Sbjct: 199 VISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQVIQVTGMADQIPYIATDT 258 Query: 327 MNSANRRIDILV 338 +ANRRI+ L+ Sbjct: 259 AAAANRRIEALI 270 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF----N 70 IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 8 IIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMN 67 Query: 71 PFG 73 P G Sbjct: 68 PTG 70 >gi|114765236|ref|ZP_01444368.1| OmpA/MotB [Pelagibaca bermudensis HTCC2601] gi|114542371|gb|EAU45399.1| OmpA/MotB [Roseovarius sp. HTCC2601] Length = 329 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 F+ T G+ I I+D+ MF S+ T +L+ I + + ++I GHTD+ P Sbjct: 194 FDRTENGLEIQIVDKSGESMFATGSARIQDRTRDLLRIIADAVVELPNELTISGHTDSVP 253 Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + R NW LS DRA + +VLM +GVS +RI++ISG A P NRRI Sbjct: 254 YTRAATYSNWELSADRANATRRVLMANGVSPERITRISGLADTEPLNPGSPDAPENRRIS 313 Query: 336 ILVE 339 + V+ Sbjct: 314 VTVQ 317 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+Q I+IK+ D ++ G+WK+ YADFMT +MAFFL++WI+ A+D++ + + YF Sbjct: 5 NEQPIVIKRIEEDDGHGHHGGAWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLADYFT 64 Query: 71 P 71 P Sbjct: 65 P 65 >gi|226327780|ref|ZP_03803298.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198] gi|225203484|gb|EEG85838.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198] Length = 350 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I IID+ N PMF S+ P +L I +L + IS+ GHTD Sbjct: 136 LLIDMMDEGLRIQIIDKANRPMFRVGSATVEPYMKDILTAIAPILNDTPYKISLSGHTDD 195 Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ + A NW LS DRA ++ + L+ +G++E ++ ++ G A + D +ANR Sbjct: 196 IPYASGAFKYSNWELSTDRANASRRELIGAGLNEWKVLRVVGMASTVHLVKEDGFAAANR 255 Query: 333 RIDILVEDRQG 343 RI ILV +Q Sbjct: 256 RISILVLTKQA 266 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N Q I +KK+ + G+WKI YADFMT +MAFFLVMW+++ + + +YF Sbjct: 4 NSQIIRVKKRGRKQHNAHG-GAWKIAYADFMTAMMAFFLVMWLLSISSPQELTRVAEYFR 62 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K + + D NP ++ + + + + K D ++ N+K+Q++RL+ N Sbjct: 63 TPLKVAIEKGRFSGDATNPIPGGGRDPV-YNEGDILPKGQEDKQL---NEKQQFRRLKEN 118 Query: 131 I 131 + Sbjct: 119 L 119 >gi|296531741|ref|ZP_06894566.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957] gi|296267924|gb|EFH13726.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957] Length = 309 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 66/124 (53%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + E T G+ + I D+ PMF +++ P P +L+ +G VLA + + GHTDA Sbjct: 163 IQLEMTPEGLRLQIFDRDGQPMFAPAATEPTPRLARILEVVGSVLASVPNEVVVSGHTDA 222 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 PF+ NW LS DRA +A + L +SGV R+ ++ A +A +P + NRRI Sbjct: 223 QPFQRGNYSNWELSADRANAARRALERSGVRPARMFRVEAKAAVEPLLAEEPNDPRNRRI 282 Query: 335 DILV 338 + V Sbjct: 283 AVTV 286 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +IIKK D + G WKI YADF+T +MAFFLVMW++++T + ++ I Q+F Sbjct: 12 VIIKKHHGEHDDEHG-GQWKIAYADFVTAMMAFFLVMWLLSSTTESQREGIAQFFT 66 >gi|238756396|ref|ZP_04617706.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473] gi|238705369|gb|EEP97776.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473] Length = 354 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 8/125 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N R Sbjct: 112 GLRIQIIDSQNRPMFQMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGER 171 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337 NW LS DRA ++ + L+ G++E ++ ++ G A RLK A DP+ NRRI IL Sbjct: 172 GYSNWELSADRANASRRELLSGGLAEGKVLRVVGMASTMRLKEQGADDPV---NRRISIL 228 Query: 338 VEDRQ 342 V ++Q Sbjct: 229 VLNKQ 233 >gi|91976556|ref|YP_569215.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91683012|gb|ABE39314.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 273 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 64/307 (20%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M +L+AFF+++ + D D K + FG + GI + P Sbjct: 14 GWFVTFADLMALLLAFFVMLVAFSTQDKDKLKIVAGSMREAFGVQNDSRYSGIIENDGLP 73 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 R EH+ LS S+ +TRD Sbjct: 74 TRGKVKNT-----EHVNPE------------------------LSTSKP---APGEVTRD 101 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 E KEE F + + ++ LQDL +IS Sbjct: 102 -------------EGVNTKEEREF-------ALASASLRQALQDL-PEIS---------E 131 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+FE T+ G+ + I+DQ MF S P T ++LQ++ L + +SI G Sbjct: 132 LSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRLLLQRLAAPLRATPLRVSIVG 191 Query: 271 HTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HT A + N + LS DRA Q+L + G+ I ++G A + DP + Sbjct: 192 HTSAGSVSQRSDYNGFDLSADRANVVRQILEREGLPVSHIFAVTGKADTQPLFPEDPSIA 251 Query: 330 ANRRIDI 336 ANRR+ I Sbjct: 252 ANRRVTI 258 >gi|229588064|ref|YP_002870183.1| flagellar motor protein MotB [Pseudomonas fluorescens SBW25] gi|229359930|emb|CAY46784.1| chemotaxis MotB protein [Pseudomonas fluorescens SBW25] Length = 339 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + FE T G+ I I D N PMFD S+ P +L + + + ISI GHTDA Sbjct: 145 ISFEITPDGLRIQITDAANRPMFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDA 204 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ NW LS +RA +A + L+ + +++++ GFA +L DP N NRR Sbjct: 205 KPYAGQGDFGNWELSANRANAARRALVAGSYPDPQVARVVGFASSQLFDHKDPFNPINRR 264 Query: 334 IDILV 338 IDI+V Sbjct: 265 IDIVV 269 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 6/67 (8%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 EN+Q IIIK K+ A ++ G+WKI +ADF T +MAFFLV+W+++ + K AI Sbjct: 2 ENNQPIIIKRVKRFAAG---HHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAG 58 Query: 68 YF-NPFG 73 YF +P G Sbjct: 59 YFKDPIG 65 >gi|284007193|emb|CBA72482.1| flagellar motor protein MotB [Arsenophonus nasoniae] Length = 320 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 193 QDLAKKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 QD KK+ L L+ ++ + +L + G+ I IID N PMF S++ Sbjct: 110 QDRFKKLQQDLELLIMNDPRLQDLKPNLLIDLMDEGLQIQIIDGENRPMFASGSAVIDKN 169 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L + VL IS+ GHTD++ + NW LS DRA S+ + L+ G+ Sbjct: 170 MQKILHVLAPVLNDYPNKISLAGHTDSTAYAKGGYGYSNWELSADRANSSRRTLISGGLD 229 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E +I ++ G A + + ++P +ANRRI ILV +++ Sbjct: 230 EHKIMRVVGMA-STVPLENNPAAAANRRISILVLNKE 265 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 27/39 (69%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 GSWKI YADFMT +MAFFLVMWI++ + I YF Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWILSISSPQELIRIADYF 62 >gi|197285528|ref|YP_002151400.1| motility protein B [Proteus mirabilis HI4320] gi|227356023|ref|ZP_03840414.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906] gi|194683015|emb|CAR43481.1| chemotaxis protein (motility protein B) [Proteus mirabilis HI4320] gi|227163800|gb|EEI48708.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906] Length = 349 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I IID+ + PMF S+ P +L I +L S IS+ GHTD Sbjct: 136 LLIDMMDEGLRIQIIDKESRPMFKVGSATVEPYMKDILTAIAPILNDSPYKISLSGHTDD 195 Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ + A NW LS DRA ++ + L+ +G++E ++ ++ G A + D ANR Sbjct: 196 IPYASGALKYSNWELSTDRANASRRELIGAGLAEWKVLRVVGMASTVHLVKEDGFAPANR 255 Query: 333 RIDILVEDRQ 342 RI ILV +Q Sbjct: 256 RISILVLTKQ 265 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N Q I +KK+ + G+WKI YADFMT +MAFFLVMW+++ + +YF Sbjct: 4 NSQIIRVKKRGKKQHNAQH-GAWKIAYADFMTAMMAFFLVMWLLSIASPQELTRVAEYFR 62 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K + + D NP ++ + D + V+ K N+K+Q+++L+ N Sbjct: 63 TPLKVAIEKGRVSGDVTNPIPGGGRDPVYNEGD--VLPKGVEDK--QLNEKQQFRKLKEN 118 Query: 131 I 131 + Sbjct: 119 L 119 >gi|218460723|ref|ZP_03500814.1| flagellar motor protein MotB [Rhizobium etli Kim 5] Length = 72 Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H +N+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNP 71 K A+ YFNP Sbjct: 62 KAAVATYFNP 71 >gi|322832491|ref|YP_004212518.1| OmpA/MotB domain protein [Rahnella sp. Y9602] gi|321167692|gb|ADW73391.1| OmpA/MotB domain protein [Rahnella sp. Y9602] Length = 367 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ T G+ I IID +N PMF S+I P +L+ I VL IS+ GHTD Sbjct: 139 LMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIAPVLDGFPNKISLAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ R NW LS +RA ++ + +M G+SE ++ ++ G +++ + P A N Sbjct: 199 MPYATGERGYSNWELSTERANASRREMMSGGLSEGKVLRVMGMGSS-MQLKNHPAGDAIN 257 Query: 332 RRIDILV 338 RRI ILV Sbjct: 258 RRISILV 264 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/38 (57%), Positives = 27/38 (71%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 SWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 26 SWKIAYADFMTAMMAFFLVMWLISISSPKELVQIAEYF 63 >gi|78063638|ref|YP_373546.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77971523|gb|ABB12902.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 318 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 15/211 (7%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 LS Q ++ + S+ + G+D+ +D +I+ + +P S + + ++L+ Sbjct: 80 LSGGQDAQAPRPSVVQGG--GRDM---SDPTPAIDTKAQP-VPASSPAALAGIVDTQKLE 133 Query: 194 DLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L K+++ ++ + + + T G+ I I+D PMF SS P +L Sbjct: 134 RLKAKLTAAIAQSPSLRAYQDQIRIAITNEGLRIEIVDSLKRPMFASGSSQPESYATAIL 193 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +IG L +SI GHTD++P+ + NW LS DRA +A + L+ G+ ED++ Sbjct: 194 SQIGTALDDVENRVSIAGHTDSTPYPDGSTGYSNWELSSDRANAARRALVAGGLREDKLL 253 Query: 311 KISGFAHHRL---KIASDPMNSANRRIDILV 338 ++ G A +A +P NRRI ILV Sbjct: 254 QVRGLADVLPLDKNVADEPT---NRRISILV 281 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 +++++K D ++ G+WKI YADF+T +MAFFL+MW++ + K+ IE YFN Sbjct: 17 LVVVRRKKGEDHDAHHGGAWKIAYADFVTAMMAFFLLMWLLGSVSKYDKQGIEDYFN--- 73 Query: 74 KNLMTASKGIFDEQNP 89 L T G D Q P Sbjct: 74 TPLSTLLSGGQDAQAP 89 >gi|86749921|ref|YP_486417.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86572949|gb|ABD07506.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 274 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+FE T TG+ + + DQ PMF SS+P T +++ K+ L ++ ++I G Sbjct: 133 LSKNVVFEETPTGLNLELTDQDGRPMFADGSSVPYERTRLLIAKLAAPLRATSLRVNIVG 192 Query: 271 HTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HT A+ N D++ LS RA + Q+L + G+S +R+ ++G PM + Sbjct: 193 HTAATAVPANGDYDSFDLSTGRANAVRQILKREGLSSNRVMSVAGKGDGEPLFPEAPMLA 252 Query: 330 ANRRIDI 336 ANRR+ I Sbjct: 253 ANRRVTI 259 >gi|115524590|ref|YP_781501.1| OmpA/MotB [Rhodopseudomonas palustris BisA53] gi|115518537|gb|ABJ06521.1| OmpA/MotB [Rhodopseudomonas palustris BisA53] Length = 280 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 3/128 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+FE T+ G+ + I+DQ PMF + S +P T ++++++ L ++ I++ G Sbjct: 139 VSKNVMFEETKEGLNLQIVDQDGRPMFPEGSPVPFQRTKLLIERLAAPLRATSLRITLVG 198 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT ++ P R+ A D + LS RA + Q+L + G+ + ++G A DPM Sbjct: 199 HTSSAVLPGRSDA-DGFDLSWQRANAVRQILKREGLPIANVLSVTGKADSEPLFPDDPML 257 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 258 AANRRVTI 265 >gi|296282270|ref|ZP_06860268.1| OmpA/MotB domain-containing protein [Citromicrobium bathyomarinum JL354] Length = 273 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 9/89 (10%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP---- 71 II KKV + + ++ G+WK+ YADF+T +MAFFL+MW++ AT +D ++ + YF P Sbjct: 12 IIVKKVTVVEGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEDQRRGLADYFTPTLVK 71 Query: 72 -----FGKNLMTASKGIFDEQNPPERSSQ 95 G N + + + D + P R Q Sbjct: 72 VKDSGAGANGLLSGASLTDVDDYPNRQGQ 100 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G+ I ++D + MF+ +++ + +L I + + I +RGHTD+ ++N Sbjct: 152 TTEGVRIDLVDDADFSMFNLGTTVLTRDAAELLAAIAQAIEPEKREIIVRGHTDSLKWKN 211 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 R +NW LS RA + Q LM G+ +D +I G A L + DP + NRRI I++ Sbjct: 212 PGRINNWSLSAGRAEATRQTLMNEGIPDDSFRRIEGVADTELLVKDDPADPRNRRISIVL 271 >gi|188592087|ref|YP_001796685.1| flagellar motor protein motb [Cupriavidus taiwanensis LMG 19424] gi|170938461|emb|CAP63448.1| Chemotaxis protein MotB; Flagellar motor rotation, linking torque machinery to cell wall [Cupriavidus taiwanensis LMG 19424] Length = 321 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D +N PMF S+ +L++IG VL +S+ GHTDA Sbjct: 145 LLLDITSEGLRIQILDTQNRPMFRTGSATVESYMRTILREIGPVLNELPNKVSLSGHTDA 204 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + + N R NW LS DRA ++ + L+ G+ E ++ ++ G A D + NR Sbjct: 205 ANYSNGERTYSNWELSGDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKQDLLAPVNR 264 Query: 333 RIDILV 338 RI I+V Sbjct: 265 RISIVV 270 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +D II ++ P+ SWKI YADFMT +MA FLV+W++++ + T + I +YF Sbjct: 5 HDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAEYF 63 >gi|187920655|ref|YP_001889687.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans PsJN] gi|187719093|gb|ACD20316.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 329 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 19/195 (9%) Query: 154 GKDLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G+D+ +D ++ K+ ++ PP +A RL+ L K+++ + I+ Sbjct: 99 GRDI---SDTRPAVGKKSQSEPTPPAVTTPSVAPSDATRLEQLKAKLTALIE---QSPIL 152 Query: 213 KG----VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 K + T G+ I I+D +N PMF SS P + +L +IG L +SI Sbjct: 153 KAFKDQIRISITNEGLRIEIVDSQNRPMFPSGSSKLQPYAVTILTQIGAALNDVDNRVSI 212 Query: 269 RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA---HHRLKIA 323 GHTDA P+ NW LS +RA +A + L+ G+ +++ ++ G A ++A Sbjct: 213 AGHTDAVPYTAGPEGYSNWELSSERANAARRSLVAGGMHGEKLLQVRGLADVLPLNSQVA 272 Query: 324 SDPMNSANRRIDILV 338 +P NRRI ILV Sbjct: 273 DEPT---NRRISILV 284 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 35/50 (70%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 WKI YADF+T +MAFFL+MW++ +T K+ IE YFN +L+ ++G Sbjct: 37 WKIAYADFVTAMMAFFLLMWLLGSTSKFDKQGIEDYFNTPLSSLLGGNEG 86 >gi|114799250|ref|YP_759621.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444] gi|114739424|gb|ABI77549.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444] Length = 226 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 57/117 (48%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 TG+ I ++D P+F+ S + ++Q L+ +SI GHTDA A Sbjct: 106 TGVRIELVDTAGRPLFETGSGALTADGAALIQAAAMSLSGLPYALSIEGHTDAFSMTGAA 165 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS RA A + L +G DR+ ++G+A R A P +ANRRI + V Sbjct: 166 SSNWELSSQRANEARRALEMAGFGTDRVKAVTGYADTRPLNAGQPHLAANRRISLQV 222 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 G+WK+ YADF+T L+AFF++MW+++ + + I F GK + TA Sbjct: 23 GTWKLAYADFLTALVAFFMLMWLVSGVSKEDRAVIASEFT--GKPVSTA 69 >gi|90423604|ref|YP_531974.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90105618|gb|ABD87655.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 275 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + IIDQ MF S +P T +++QK+ L + +SI G Sbjct: 134 LSKNIMFEETKEGLNLEIIDQDGRSMFADGSKVPFERTRLLIQKLAAPLRATPLRVSIVG 193 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT A P R + + LS DRA + Q+L + G+ + +SG A + DPM Sbjct: 194 HTSAGLMPGRT-DYNAFDLSSDRANAVRQILEREGLPTSHVFAVSGKADSQPLFPDDPML 252 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 253 AANRRVTI 260 >gi|255264513|ref|ZP_05343855.1| OmpA/MotB [Thalassiobium sp. R2A62] gi|255106848|gb|EET49522.1| OmpA/MotB [Thalassiobium sp. R2A62] Length = 272 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 43/57 (75%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 IIIK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT ++ +K I YF+P Sbjct: 9 IIIKRKKVVSGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTENQRKGIADYFSP 65 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 201 STLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + LSG V D +++ V+ T G++I + D + P+F +S +P + I ++ Sbjct: 125 TALSGESAVIDRMLRHVITRVTDEGLIIELFDLEDQPLFIDASDVPTGVMQDLTAMIAQI 184 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + +++ GH + P + NW +S RA + +L ++G ++++++ AH Sbjct: 185 VGFVSNDLAVEGHVRSQPIVLLKNQNWEISHSRAQAIRLLLQQNGAYPQQMNRVT--AHG 242 Query: 319 -RLKIASDPMNSANRRIDILV 338 R +P++ N RI+I+V Sbjct: 243 DREPQYKNPLSVRNNRIEIIV 263 >gi|146305234|ref|YP_001185699.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145573435|gb|ABP82967.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 313 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-- 280 G+ I I D MF + S+ P +LQ++ +LA + I GHTD++P+R + Sbjct: 162 GLRILIKDDAQRFMFSRGSARLDPHFEKLLQRLAGILAKVDNHLIISGHTDSTPYRGVVG 221 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +NW LS DRA A VL+++G+ + +++ A + SDP N ANRRI++L+ Sbjct: 222 GYNNWNLSGDRALRARNVLVEAGLPTSAVLQVTAQADGMPLLPSDPQNGANRRIELLL 279 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G + E II+K++ + G+WK+ +ADF +MA F+V+WII + Sbjct: 1 MRKRGGEEHE----IIVKRRSKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQNQQ 56 Query: 61 TKKA-IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 +A +Q NP L+ GIFD SS+ +DL Sbjct: 57 QSRADADQLTNP----LVEGGAGIFDG------SSRTPLDL 87 >gi|309778972|ref|ZP_07673742.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA] gi|308922319|gb|EFP67946.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA] Length = 315 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 13/131 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTTEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGSALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330 + + NW LS DRA ++ + L+ G+ +++S++ G AS P++ A Sbjct: 204 TQYATQHGYSNWELSADRANASRRELVAGGMKPEKVSRVVGLE------ASVPLDKANIY 257 Query: 331 ---NRRIDILV 338 NRRI I+V Sbjct: 258 NPINRRISIVV 268 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|116694193|ref|YP_728404.1| flagellar motor protein MotB [Ralstonia eutropha H16] gi|113528692|emb|CAJ95039.1| Chemotaxis protein [Ralstonia eutropha H16] Length = 321 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D +N PMF S+ +L++IG VL +S+ GHTDA Sbjct: 145 LLLDITSEGLRIQILDTQNRPMFRTGSATVETYMRTILREIGPVLNELPNKVSLSGHTDA 204 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + + N R NW LS DRA ++ + L+ G+ E ++ ++ G A D + NR Sbjct: 205 ANYSNGERTYSNWELSGDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKEDLLAPVNR 264 Query: 333 RIDILV 338 RI I+V Sbjct: 265 RISIVV 270 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +D II ++ P+ SWKI YADFMT +MA FLV+W++++ + T + I +YF Sbjct: 5 HDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAEYF 63 >gi|315180456|gb|ADT87370.1| chemotaxis LafU protein [Vibrio furnissii NCTC 11218] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 60/121 (49%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ I I D PMF++ S P +L + V + I + GHTDAS F Sbjct: 139 QITPQGLKIIISDSDKGPMFNRGGSSMTPYYQDLLLNLAPVFSRVENAIIVTGHTDASRF 198 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 R + NW LS +RA SA L GV +I ++SG A + +P + NRRI+I Sbjct: 199 RGTSMTNWELSSNRANSARYFLNSGGVPRAQIFQVSGMAESAPLLPENPKSGQNRRIEIF 258 Query: 338 V 338 + Sbjct: 259 L 259 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 D IIKKK + + G WK+ AD M + A FL++W++ DD+ + QYF Sbjct: 4 DGVTIIKKKKRGGHSGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61 >gi|146278768|ref|YP_001168927.1| flagellar motor protein-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145557009|gb|ABP71622.1| Flagellar motor protein-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 44/64 (68%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q N ++IK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Sbjct: 3 GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLAD 62 Query: 68 YFNP 71 YFNP Sbjct: 63 YFNP 66 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 A + + RL+++ K + + T + + +++ ++ T G++I I D + P+F + Sbjct: 120 AAEEQARLEEVEKLLKARTGESMTMERLLRHIVTRITDEGLVIEIFDLPDVPLFLGDTDQ 179 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P P + + + EVL +T I++ GH + P I W LS RA +++ +G Sbjct: 180 PEPILPQIARLLAEVLPITTNRIAVSGHVRSYPITLIRNPAWDLSALRAQRMRELIESAG 239 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +R +ISGFA R DPM N R+++++ Sbjct: 240 LPGERTQRISGFA-DRKPATPDPMAVRNNRLEVIL 273 >gi|260431755|ref|ZP_05785726.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157] gi|260415583|gb|EEX08842.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157] Length = 279 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIKKK ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 4 QTNAAPIIIKKKRTSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 63 Query: 69 FNP 71 F+P Sbjct: 64 FSP 66 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%) Query: 199 ISSTLSGLVADNIV-----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + +TL G +++V K ++ T G+++ + D + P+F+ + P ++ Sbjct: 132 LEATLLGRAGESMVSKKALKHIVTRVTDKGLVVELFDTDDEPLFEPGTDNPTQLMRALVL 191 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + T I++ GH +SP W LS RA Q+L GV R+++++ Sbjct: 192 FVARSSDLVTNAIAVEGHVKSSPLVVAHNPAWELSTSRAQVIRQLLQDKGVRPSRLNRVT 251 Query: 314 GFAHHRLKIASDPMNSANRRIDIL 337 G A +L + +PM + N RI+I+ Sbjct: 252 GHADRKLAV-ENPMAARNDRIEII 274 >gi|238751745|ref|ZP_04613233.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380] gi|238710016|gb|EEQ02246.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380] Length = 339 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 8/125 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N R Sbjct: 112 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGER 171 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337 NW LS DRA ++ + L+ G+ E ++ ++ G A RLK A DP+ NRRI IL Sbjct: 172 GYSNWELSADRANASRRELLIGGLDEGKVLRVIGMASTMRLKEQAADDPV---NRRISIL 228 Query: 338 VEDRQ 342 V ++Q Sbjct: 229 VLNKQ 233 >gi|73539429|ref|YP_299796.1| flagellar motor protein MotB [Ralstonia eutropha JMP134] gi|72122766|gb|AAZ64952.1| OmpA/MotB [Ralstonia eutropha JMP134] Length = 325 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D +N PMF + P +L++IG V+ +S+ GHTD+ Sbjct: 145 LLLDITSEGLRIQILDTQNRPMFRTGRAEVEPYMRAILREIGPVINDLPNKVSLSGHTDS 204 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + + N R NW LS DRA ++ + L+ G+ E ++ ++ G A SD + NR Sbjct: 205 ANYSNGERTYSNWELSSDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKSDLLAPVNR 264 Query: 333 RIDILV 338 RI I+V Sbjct: 265 RISIVV 270 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ND II ++ P+ SWKI YADFMT +MA FLV+W++++ + T + I +YF Sbjct: 5 NDMRPIIVRRAKSHAKPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAEYF 63 >gi|260768753|ref|ZP_05877687.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] gi|260616783|gb|EEX41968.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] Length = 324 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 60/121 (49%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ I I D PMF++ S P +L + V + I + GHTDAS F Sbjct: 139 QITPQGLKIIISDSDKGPMFNRGGSSMTPYYQDLLLNLAPVFSRVENAIIVTGHTDASRF 198 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 R + NW LS +RA SA L GV +I ++SG A + +P + NRRI+I Sbjct: 199 RGTSMTNWELSSNRANSARYFLNSGGVPRAQIFQVSGMAESAPLLPENPKSGQNRRIEIF 258 Query: 338 V 338 + Sbjct: 259 L 259 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 D IIKKK + G WK+ AD M + A FL++W++ DD+ + QYF Sbjct: 4 DGVTIIKKKKRGGHGGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61 >gi|187926231|ref|YP_001892576.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] gi|241665719|ref|YP_002984078.1| flagellar motor protein MotB [Ralstonia pickettii 12D] gi|187727985|gb|ACD29149.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] gi|240867746|gb|ACS65406.1| OmpA/MotB domain protein [Ralstonia pickettii 12D] Length = 315 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 144 LLIDMTTEGLRIQIVDQQNRPMFANASAEVQPYMRTILRELGTALNDVPNPISLSGHTDA 203 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ +++S++ G ++ N NRR Sbjct: 204 TQYATQHGYSNWELSADRANASRRELVAGGMKPEKVSRVVGLEASVPLDKTNIYNPINRR 263 Query: 334 IDILV 338 I I+V Sbjct: 264 ISIVV 268 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WKI YADF+T +MAFFL+MW++++ ++E YF Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVETYF 63 >gi|120555689|ref|YP_960040.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120325538|gb|ABM19853.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 319 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+D+ PMFD + +L ++ + L ISI GHTDA Sbjct: 138 LLLDITDEGLRIQIVDRSGRPMFDSGRDELKYYSQDILFELAKKLGSVDNKISITGHTDA 197 Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 +PF NW LS DRA +A + L+ GV ++I+++ G + L +P NRR Sbjct: 198 TPFSGRPGYTNWELSADRANTARRALVAGGVRLEQIARVVGLSDSVLFDKDNPTAPVNRR 257 Query: 334 IDILV 338 I I+V Sbjct: 258 ISIIV 262 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-N 70 +Q IIIK+K + ++ GSWK+ +ADF T +MAFFLV+W+ + K A+E YF + Sbjct: 3 EQPIIIKRKKKVVGG-HHGGSWKVAFADFATAMMAFFLVLWLTATATPEQKLAVEGYFKD 61 Query: 71 PFG 73 P G Sbjct: 62 PVG 64 >gi|332284002|ref|YP_004415913.1| chemotaxis protein [Pusillimonas sp. T7-7] gi|330427955|gb|AEC19289.1| chemotaxis protein [Pusillimonas sp. T7-7] Length = 310 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I IID++N PMF S+ +L+++G +SI GHTD+ Sbjct: 138 LLLDMTPDGLRIQIIDKQNRPMFATGSAQVQSYMRDILRQLGPTFNRLPNPLSISGHTDS 197 Query: 275 SPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + + RD NW LS DRA +A + L+ G+ E ++ ++ G + I +P + NR Sbjct: 198 IQYASGERDYSNWELSADRANAARRELVAGGMGESKVKRVLGLSSSVSLIKDNPAAAVNR 257 Query: 333 RIDILV 338 RI I+V Sbjct: 258 RISIVV 263 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N++ + +I +K+ + N+ SWKI YADF+T +MAFFLVMW++ + + + Sbjct: 2 NKQEPRIVIRRKRSHVSVKHND--SWKIAYADFVTAMMAFFLVMWLVALVPQKDLQEMAE 59 Query: 68 YFNPFGKNLMTASKG 82 YF LMTA KG Sbjct: 60 YFR---MPLMTAVKG 71 >gi|254512283|ref|ZP_05124350.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11] gi|221535994|gb|EEE38982.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11] Length = 279 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIKKK ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 4 QTNVAPIIIKKKRVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTETQRKGLADY 63 Query: 69 FNP 71 F+P Sbjct: 64 FSP 66 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 13/148 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A+ + T LV+D ++K ++ T G+++ + + P+F+ S P +++ + Sbjct: 134 AQLLGRTGESLVSDEMLKHIVTRVTDEGLVVELFSTEDQPLFESGSDKP----TQMMRAL 189 Query: 256 GEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 ++A S+++ I++ GH ++P W LS RA Q+L GV R+ + Sbjct: 190 TLLVARSSDLVTNSIAVEGHVRSAPVVLAHNPTWDLSTTRAQITRQLLQNKGVQPQRLVR 249 Query: 312 ISGFA--HHRLKIASDPMNSANRRIDIL 337 ++G A H L+ +PM N R++I+ Sbjct: 250 VAGHADREHALE---NPMAVRNDRVEII 274 >gi|238785460|ref|ZP_04629444.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC 43970] gi|238713615|gb|EEQ05643.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC 43970] Length = 380 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 6/132 (4%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 104 LLINMMEEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDD 163 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSA 330 P+ N R NW LS DRA ++ + L+ G+ E ++ ++ G A RLK ASD + Sbjct: 164 LPYANGERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASD--DPV 221 Query: 331 NRRIDILVEDRQ 342 NRRI ILV ++Q Sbjct: 222 NRRISILVLNKQ 233 >gi|183598599|ref|ZP_02960092.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827] gi|188020776|gb|EDU58816.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827] Length = 317 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I I+D N PMF S+ P +L+ I +L ISI GHTD Sbjct: 137 LLIDMIDDGLRIQIVDSENRPMFMVGSAYVEPHMRDILRAIAPLLNDVPNKISISGHTDD 196 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ N A +NW LS DRA ++ + L+ G+++D+I ++ G A ++ + NRR Sbjct: 197 LPYANGANYNNWELSADRANASRRELIAGGLNQDKILRVVGMASSIHLDKNNGLAPVNRR 256 Query: 334 IDILV 338 I I+V Sbjct: 257 ISIIV 261 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N I +KK+VA + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 5 NAHIIRVKKRVASHQNGHG-GSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFR 63 Query: 71 PFGKNLMTASKGIFDEQNP 89 K + + D NP Sbjct: 64 TPLKTAINSGTKSGDATNP 82 >gi|238782805|ref|ZP_04626834.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970] gi|238716228|gb|EEQ08211.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970] Length = 296 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR- 278 T G+LI +ID + PMF S P +LQ + VL IS+ GHTD+ P+ Sbjct: 110 TEDGLLIQVIDSQERPMFKVGSKELEPYMRGILQALVPVLNDLPNKISLTGHTDSLPYAR 169 Query: 279 -NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + NW LS DRA ++ Q L+ G++E++ ++ G A+ P + NRRI IL Sbjct: 170 GEVGYSNWELSADRANASRQTLVAGGLAENKFLRVIGTANMMNLENVRPDDPINRRISIL 229 Query: 338 V 338 V Sbjct: 230 V 230 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 21/29 (72%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYF 69 MT +MAFFLVMW+++++ ++ I YF Sbjct: 1 MTAMMAFFLVMWLLSSSTPLQREQIADYF 29 >gi|218516717|ref|ZP_03513557.1| flagellar motor protein MotB [Rhizobium etli 8C-3] Length = 89 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 N H +N+ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++T Sbjct: 6 NHHHGRNE----IIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEET 61 Query: 62 KKAIEQYFNP 71 K A+ YFNP Sbjct: 62 KAAVATYFNP 71 >gi|27378912|ref|NP_770441.1| chemotaxis protein [Bradyrhizobium japonicum USDA 110] gi|27352062|dbj|BAC49066.1| pomB [Bradyrhizobium japonicum USDA 110] Length = 276 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/308 (24%), Positives = 120/308 (38%), Gaps = 64/308 (20%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M ++M+FF+++ + D + K + + FG GI + P Sbjct: 15 GWFVTFADLMGLMMSFFVMLVAFSTQDANKLKIVAGSMRDAFGVQSEARYAGIVESDGLP 74 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 R +D HI Q E N+ T D Sbjct: 75 TRPRLKNVD-----HI--------------------------------QPEDASNTPTPD 97 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 E +D I + N+ L A ++ LQD+ + Sbjct: 98 QED-RDRTSGA----KIKVDRNFAL--------AAASLRQALQDMPELT----------E 134 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + I+DQ MF S +P T +++K+ L + +SI G Sbjct: 135 MSKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLVEKLAIPLKATPLRVSIAG 194 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT A P R+ + LS DRA + Q+L + G+ I +SG A + DP Sbjct: 195 HTAAGFVPTRS-DYGAFDLSADRANAVRQILEREGLPASHIFAVSGKADTQPLFPDDPSL 253 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 254 AANRRVTI 261 >gi|330821029|ref|YP_004349891.1| OmpA/MotB [Burkholderia gladioli BSR3] gi|327373024|gb|AEA64379.1| OmpA/MotB [Burkholderia gladioli BSR3] Length = 307 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + TTR G+ I I+D R+ PMF S+ +L +IG +L +SI GHTDA Sbjct: 154 IRLSTTREGLRIEIVDSRSRPMFATGSARLEDYASDILFRIGTLLNQVDNRVSIAGHTDA 213 Query: 275 SPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-AN 331 P+ NW LS DRA +A + L+ + ED++ +I G A L + ++ N Sbjct: 214 VPYSGGIAGYSNWELSSDRANAARRALVAGHLREDKLLQIRGLA-DVLPLDQGAADAEVN 272 Query: 332 RRIDILVEDRQ 342 RRI ILV ++Q Sbjct: 273 RRISILVLNKQ 283 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WKI YADF+T +MAFFL+MW++ +T +K IE YFN L+ G + N Sbjct: 35 GAWKIAYADFVTAMMAFFLLMWLLGSTSKYDRKGIEDYFNTPLSTLL----GTHADSNGT 90 Query: 91 ERSS 94 RSS Sbjct: 91 ARSS 94 >gi|238795043|ref|ZP_04638637.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC 29909] gi|238725644|gb|EEQ17204.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC 29909] Length = 388 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 8/133 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 129 LLINMMEEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDD 188 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNS 329 P+ N R NW LS DRA ++ + L+ G+ E ++ ++ G A RLK DP+ Sbjct: 189 LPYANGERGYSNWELSADRANASRRELLVGGLDEGKVLRVVGMASTMRLKEQPGDDPV-- 246 Query: 330 ANRRIDILVEDRQ 342 NRRI ILV ++Q Sbjct: 247 -NRRISILVLNKQ 258 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +++K+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +YF Sbjct: 1 MVRKRKAKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQQLTQIAEYF 54 >gi|307726280|ref|YP_003909493.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307586805|gb|ADN60202.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 330 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 15/174 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235 P++ +A RLQ L +K+ S + A K + T G+ I I+D +N P Sbjct: 121 PVNVVPTVAPADAARLQQLKEKLVSLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRP 180 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAY 293 MF S + +L +IG L ISI GHTDA P+ + NW LS +RA Sbjct: 181 MFASGSPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERAN 240 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS------ANRRIDILVEDR 341 +A + L+ G+ +++ ++ G A P+NS NRRI ILV ++ Sbjct: 241 AARRALVAGGMHGEKLLQVRGLADVL------PLNSNVVDEPTNRRISILVMNK 288 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 3 SHGDKNQENDQ--FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 S G + QE I+ + K D ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 6 SRGSQEQEAPPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKF 65 Query: 61 TKKAIEQYFNPFGKNLMTASKG 82 K+ IE YFN +L+ S+G Sbjct: 66 DKQGIEDYFNTPLSSLLGGSQG 87 >gi|316934820|ref|YP_004109802.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602534|gb|ADU45069.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 273 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 126/309 (40%), Gaps = 68/309 (22%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M +L+AFF+++ + D K + FG GI + P Sbjct: 14 GWFVTFADLMALLLAFFVMLVAFSTQDTQKLKIVAGSMREAFGVQSDARYSGIIENDGLP 73 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 R EH+ LS ++ S +TRD Sbjct: 74 TRGKVKNT-----EHVNPE------------------------LSTAKPS---PGEVTRD 101 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA-MKRKKRLQDLAKKISSTLSGLVAD 209 + IN +E+ +E LA ++ LQ++ + +A+ Sbjct: 102 --------------EGINTKED-------REFALASASLRQALQNMPE---------IAE 131 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + K ++FE T+ G+ + I+DQ MF S +P T ++LQ++ L + ISI Sbjct: 132 -LSKNIMFEETKQGLNLEIMDQDGRSMFADGSRVPFERTRLLLQRLAVPLRATPLRISIV 190 Query: 270 GHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHT + P R+ + W LS DRA S Q+L + G+ I ++G + + DP Sbjct: 191 GHTSSGLLPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTGKSDSQPLFPEDPS 249 Query: 328 NSANRRIDI 336 +ANRR+ I Sbjct: 250 IAANRRVTI 258 >gi|86750474|ref|YP_486970.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86573502|gb|ABD08059.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 273 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/308 (24%), Positives = 117/308 (37%), Gaps = 66/308 (21%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M +L+AFF+++ + D D K + FG GI + P Sbjct: 14 GWFVTFADLMALLLAFFVMLTAFSTQDKDKLKVVAGSMREAFGVQSDARYSGIIENDGLP 73 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 R KN+ EH L+ Sbjct: 74 TRGK------------VKNT------------------------------EHVNPELSTA 91 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 ++ K + KEE F + + ++ LQD+ +IS Sbjct: 92 KPSPGEVSKDEGIH---TKEEREF-------ALASASLRQALQDM-PEIS---------E 131 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+FE T+ G+ + I+DQ MF S P T +LQ + L + I+I G Sbjct: 132 LSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRRLLQSLAGPLRATPLRITIAG 191 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT A P R+ + + LS DRA + Q+L + GV ++G + + DP Sbjct: 192 HTSAGLMPARS-DYNGFDLSADRANAVRQILEREGVPTSHFFAVTGRSDTQPLFPEDPAI 250 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 251 AANRRVTI 258 >gi|13446371|gb|AAK20927.1| LafU [Aeromonas hydrophila] Length = 315 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 R G+ I I D M+ + S+ P +L + + + I GHTD++PF Sbjct: 165 RKGLRILIRDDDEREMYSRGSARISPFFRHMLMALAPIFQRVENRVMISGHTDSTPFAGD 224 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA A +VL+ G+ +R+ +++ + L+ +DP S NRRI++LV Sbjct: 225 NYSNWELSSDRAMMARRVLLAGGMPPERVGQVAAMSDTMLENTADPRGSQNRRIELLV 282 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N + IIIK++ + P G+ K+ +ADF +MAFF+V+WI+ + + ++ + + Sbjct: 3 NHEQIIIKRQQRRNSAPKGGGACKVAFADFTLAMMAFFMVLWILAVSSQEEREVVARRLR 62 Query: 71 PFGKNLMTASKGIFDEQNPP 90 + ++M + FD +N P Sbjct: 63 DY--SIMDSEANPFDIRNSP 80 >gi|218548503|ref|YP_002382294.1| flagellar motor protein MotB [Escherichia fergusonii ATCC 35469] gi|218356044|emb|CAQ88660.1| protein that enables flagellar motor rotation [Escherichia fergusonii ATCC 35469] gi|324113675|gb|EGC07650.1| OmpA family protein [Escherichia fergusonii B253] gi|325496923|gb|EGC94782.1| flagellar motor protein MotB [Escherichia fergusonii ECD227] Length = 304 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDMVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLAGHTDDYP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRR 333 + N R NW LS DRA ++ + LM G+ E ++ ++ G A ++++ N A NRR Sbjct: 202 YANGERGYSNWELSADRANASRRELMVGGLEEGKLLRVVGMAAT-MRLSDRGGNDAINRR 260 Query: 334 IDILVEDRQ 342 I +LV ++Q Sbjct: 261 ISLLVLNKQ 269 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 I++K++ + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 8 IIVVKRRKPKNHGGAGHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL 67 Query: 74 KNLMTASKGIFDEQNP 89 +T I + Q+P Sbjct: 68 ATAITGGDRISNSQSP 83 >gi|254463728|ref|ZP_05077139.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206684636|gb|EDZ45118.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 282 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIK+K ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 8 QSNVAPIIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 67 Query: 69 FNP 71 F+P Sbjct: 68 FSP 70 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 189 KKRLQDLAK--KISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 +KR +D +K I LSG +V+ + + ++ T G++I + + P+F++ Sbjct: 124 EKREEDDSKFRAIEEQLSGRGGESMVSVAMARHIVTRVTDEGLIIELFATEDMPLFEEDQ 183 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 + P P +++ I V T ++I GH + P W LS RA +L Sbjct: 184 AEPKPLFRDLVRMIARVSDGVTSNVAIGGHIRSHPVVLAKNPVWELSHARADITRTLLES 243 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 G+ R+ +++G A +L + +PM + N RI+I+ Sbjct: 244 GGLDAGRVHRVTGHADRKLAVG-NPMAARNDRIEII 278 >gi|85058002|ref|YP_453704.1| flagellar motor protein MotB [Sodalis glossinidius str. 'morsitans'] gi|84778522|dbj|BAE73299.1| chemotaxis protein MotB [Sodalis glossinidius str. 'morsitans'] Length = 341 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID + PMF + P +L+ I VL + IS+ GHTD P+ N R Sbjct: 141 GLRIEIIDSKKRPMFATGGTAIAPYMRSILRIIAPVLDNLPNRISLAGHTDNQPYLNGER 200 Query: 283 D--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + L++ G++ D+I ++ G A+ N+A RRI I++ Sbjct: 201 GYGNWELSTDRANASRRELVEGGLAGDKILRVIGMANTMAPAGKVDDNAAQRRISIVILT 260 Query: 341 RQ 342 R+ Sbjct: 261 RE 262 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 +GSWKI YADFMT +MAFF+VMW++ AT ++ I YF K +T G F+ N Sbjct: 22 VGSWKIAYADFMTAMMAFFMVMWMLGATTPQQREQIADYFKMPLKEALT-HNGKFNMGN- 79 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 I L +D T L+ ++ QRL+N Sbjct: 80 --------IPLPVDAKDTDGLTRLRQRELEHQRDIQRLKN 111 >gi|238795648|ref|ZP_04639162.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC 43969] gi|238720374|gb|EEQ12176.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC 43969] Length = 385 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 6/132 (4%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 104 LLINMMEEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDD 163 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSA 330 P+ N R NW LS DRA ++ + L+ G+ E ++ ++ G A RLK ASD + Sbjct: 164 LPYANGERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASD--DPV 221 Query: 331 NRRIDILVEDRQ 342 NRRI ILV ++Q Sbjct: 222 NRRISILVLNKQ 233 >gi|209885628|ref|YP_002289485.1| OmpA/MotB [Oligotropha carboxidovorans OM5] gi|209873824|gb|ACI93620.1| OmpA/MotB [Oligotropha carboxidovorans OM5] Length = 275 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 2/127 (1%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + I+DQ MF + S P T ++++K+ L S I+I G Sbjct: 135 LSKHIMFEETKNGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLAAPLRQSPLRIAIVG 194 Query: 271 HTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HT A+ P R D + LS DRA + Q+L G+ I +SG A DP S Sbjct: 195 HTSANVPLRP-GYDAFDLSADRANAVRQILQNEGLPATHIFSVSGKADTEPLFPDDPTLS 253 Query: 330 ANRRIDI 336 ANRR+ I Sbjct: 254 ANRRVTI 260 >gi|242238952|ref|YP_002987133.1| flagellar motor protein MotB [Dickeya dadantii Ech703] gi|242131009|gb|ACS85311.1| OmpA/MotB domain protein [Dickeya dadantii Ech703] Length = 377 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + + R NW LS DRA ++ + L+ G++E ++ ++ G A LK A D ++ N Sbjct: 195 ARYATGERGYSNWELSADRANASRRELIAGGLTEGKVLRVVGMADTMNLKQAKDGSDAIN 254 Query: 332 RRIDILVEDRQ 342 RRI ++V ++Q Sbjct: 255 RRISLVVLNKQ 265 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 42/77 (54%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63 Query: 73 GKNLMTASKGIFDEQNP 89 K +T+ + D NP Sbjct: 64 LKIAITSGPKMSDASNP 80 >gi|323529505|ref|YP_004231657.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323386507|gb|ADX58597.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 328 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 15/174 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235 P++ +A RLQ L +K+ S + A K + T G+ I I+D +N P Sbjct: 119 PVNVVPTVAPADAARLQQLKEKLISLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRP 178 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAY 293 MF S + +L +IG L ISI GHTDA P+ + NW LS +RA Sbjct: 179 MFASGSPRLQTYAVAILTQIGAALNDVDNRISIAGHTDAVPYTGGPVGYSNWELSSERAN 238 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS------ANRRIDILVEDR 341 +A + L+ G+ +++ ++ G A P+NS NRRI ILV ++ Sbjct: 239 AARRALVSGGMHGEKLLQVRGLADVL------PLNSNVVDEPTNRRISILVMNK 286 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 50/80 (62%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S G++ + I+ + K A D ++ G+WKI YADF+T +MAFFL+MW++ +T K Sbjct: 6 SRGEEQEVPPPIIVRRSKKADDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFDK 65 Query: 63 KAIEQYFNPFGKNLMTASKG 82 + IE YFN +L+ ++G Sbjct: 66 QGIEDYFNTPLSSLLGGNEG 85 >gi|226944522|ref|YP_002799595.1| flagellar motor protein [Azotobacter vinelandii DJ] gi|226719449|gb|ACO78620.1| Flagellar motor protein [Azotobacter vinelandii DJ] Length = 306 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 3/173 (1%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISII 229 E + + P +++ + + RL+ L ++I LS + + +L + T G+ I ++ Sbjct: 94 ERFRIDPQLASRLVDEQERARLRQLERRIREALSINPILKELKDQILIDLTPEGLRIQLV 153 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRL 287 D PMF+ S+ P +L+ + +L I I GHTD+ P+ NW L Sbjct: 154 DTEQRPMFEIGSARVAPYMRTLLRTLAPMLNELPNRIQISGHTDSLPYAGGEAGYSNWEL 213 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 S DRA ++ + L+ G++ +++ + SG + P ++ANRRI ++V D Sbjct: 214 SADRANASRRELIAGGLALEKLLRTSGMSDRIPFEGVAPNDAANRRIAVIVLD 266 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 13/123 (10%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73 III++K + ++ G+WKI +ADFMT LMA FLV+W++ + + K A+ +YF P Sbjct: 7 IIIRRKKRGGEG-HHGGAWKIAFADFMTALMALFLVLWMLANSGEAQKAAVAEYFRTPLV 65 Query: 74 KNLM-----TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 LM AS+ + P ++ + ID + VD ++ + ++LE Sbjct: 66 VALMGGDREGASENVIPGGGPDPTFAEGE-RFRIDPQLASRLVD-----EQERARLRQLE 119 Query: 129 NNI 131 I Sbjct: 120 RRI 122 >gi|39935079|ref|NP_947355.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris CGA009] gi|192290612|ref|YP_001991217.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|39648930|emb|CAE27451.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris CGA009] gi|192284361|gb|ACF00742.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 274 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 66/308 (21%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 W + +AD M +LM+FF+++ Sbjct: 15 GWFVTFADLMGLLMSFFVMLVAF------------------------------------- 37 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN-IFYLSNSQQSEHCKNSLTRD 150 S+Q+K L I S+ G N + +EN+ + + +EH L+ Sbjct: 38 -STQDKAKL----MIVAGSMREAFGVQNDARYSGIIENDGLPTRGKVKNTEHVNPELSTA 92 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 ++ + ++ IN +E+ S A++ + +L+K I Sbjct: 93 KPSPGEVTR----DEGINTKEDREFALASASLRQALQNMPEISELSKNI----------- 137 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +FE T+ G+ + I+DQ MF S +P T ++LQ++ L + ++I G Sbjct: 138 -----MFEETKQGLNLEIMDQDGRSMFADGSKVPFERTRLLLQRLAVPLRATPLRVTIVG 192 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT + P R+ + W LS DRA S Q+L + G+ I ++G A + DP Sbjct: 193 HTSSGLMPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTGKADSQPLFPDDPSI 251 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 252 AANRRVTI 259 >gi|260598378|ref|YP_003210949.1| flagellar motor protein MotB [Cronobacter turicensis z3032] gi|260217555|emb|CBA31774.1| Chemotaxis protein motB [Cronobacter turicensis z3032] Length = 310 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL +S+ GHTD P Sbjct: 143 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTDDFP 202 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRR 333 + N R NW LS DRA S+ + L+ G+ + ++ ++ G A +++A N A NRR Sbjct: 203 YANGERGYSNWELSADRANSSRRELVIGGLDDGKVLRVVGMAAT-MRLAEKGANEALNRR 261 Query: 334 IDILVEDRQ 342 I +LV ++Q Sbjct: 262 ISLLVLNKQ 270 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 5 NHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYFR 64 Query: 71 PFGKNLMTASKGIFDEQNP 89 +T I D +P Sbjct: 65 TPLSAAITGGHRIADSDSP 83 >gi|283832712|ref|ZP_06352453.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220] gi|291072391|gb|EFE10500.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220] Length = 309 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Query: 188 RKKRLQDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242 RK+ Q +K+ L L+ AD ++ + + + G+ I IID +N PMF S+ Sbjct: 108 RKRMEQSRLRKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 P +L+ I VL IS+ GHTD P+ N + NW LS DRA ++ + L+ Sbjct: 168 EVEPYMRDILRAIAPVLNGIPNRISLSGHTDDYPYANGEKGYSNWELSADRANASRRELV 227 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 228 SGGLDDGKVLRVVGMAATMRLSDRGPEDAINRRISLLVLNKQA 270 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKHKGHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + Q+P Sbjct: 61 EYFRTPLATAVTGGNRISNSQSP 83 >gi|332161302|ref|YP_004297879.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665532|gb|ADZ42176.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 409 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 8/125 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ + R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337 NW LS DRA ++ + L+ G+ E ++ ++ G A RLK + DP+ NRRI IL Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASDDPV---NRRISIL 262 Query: 338 VEDRQ 342 V ++Q Sbjct: 263 VLNKQ 267 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 47/81 (58%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +++ + D +P Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83 >gi|261340281|ref|ZP_05968139.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316] gi|288317370|gb|EFC56308.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316] Length = 309 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242 KKR+ Q KK+ L L+ AD ++ + + + G+ I IID +N PMF S+ Sbjct: 108 KKRMEQARLKKVRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 P +L+ I VL +S+ GHTD P+ N + NW LS DRA ++ + L+ Sbjct: 168 EVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYANGEKGYSNWELSADRANASRRELV 227 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 228 AGGLDDGKVLRVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSH-PIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T + I + +P Sbjct: 61 EYFRTPLATAVTGGQRISNSDSP 83 >gi|318605218|emb|CBY26716.1| flagellar motor rotation protein MotB [Yersinia enterocolitica subsp. palearctica Y11] Length = 409 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ + R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E ++ ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 47/81 (58%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +++ + D +P Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83 >gi|237731926|ref|ZP_04562407.1| flagellar motor protein MotB [Citrobacter sp. 30_2] gi|226907465|gb|EEH93383.1| flagellar motor protein MotB [Citrobacter sp. 30_2] Length = 309 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDYP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ + ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVSGGLDDGKVLRVVGMAATMRLSDRGPEDAINRRI 261 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 262 SLLVLNKQ 269 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKHKNHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + Q+P Sbjct: 61 EYFRTPLATAVTGGNRISNSQSP 83 >gi|238788297|ref|ZP_04632091.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC 33641] gi|238723543|gb|EEQ15189.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC 33641] Length = 365 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ R Sbjct: 112 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATGER 171 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337 NW LS DRA ++ + L+ G+ E ++ ++ G A RLK A DP+ NRRI IL Sbjct: 172 GYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQTADDPV---NRRISIL 228 Query: 338 VEDRQ 342 V ++Q Sbjct: 229 VLNKQ 233 >gi|238764369|ref|ZP_04625319.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC 33638] gi|238697395|gb|EEP90162.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC 33638] Length = 375 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 8/125 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ + R Sbjct: 109 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 168 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337 NW LS DRA ++ + L+ G+ E ++ ++ G A RLK + DP+ NRRI IL Sbjct: 169 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASDDPV---NRRISIL 225 Query: 338 VEDRQ 342 V ++Q Sbjct: 226 VLNKQ 230 >gi|123442804|ref|YP_001006781.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089765|emb|CAL12618.1| chemotaxis MotB protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 414 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ + R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E ++ ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 47/81 (58%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +++ + D +P Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83 >gi|296161288|ref|ZP_06844096.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295888446|gb|EFG68256.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 329 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL+ L K+++ + A K + T G+ I I+D +N PMF SS P Sbjct: 134 RLEQLKAKLTALIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFPSGSSKLQPYAE 193 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L +IG L ISI GHTDA P+ NW LS +RA +A + L+ G+ + Sbjct: 194 TILTQIGAALNDVDNRISIAGHTDAVPYTAGPEGYSNWELSSERANAARRALVAGGMHGE 253 Query: 308 RISKISGFA---HHRLKIASDPMNSANRRIDILV 338 ++ ++ G A IA +P NRRI ILV Sbjct: 254 KLLQVRGLADVLPLNSNIADEPT---NRRISILV 284 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 2 NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 NS + ++ +I+++ K D ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 NSRASQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKY 64 Query: 61 TKKAIEQYFNPFGKNLMTASKG 82 K+ IE YFN +L+ ++G Sbjct: 65 DKQGIEDYFNTPLSSLIGGNEG 86 >gi|283785634|ref|YP_003365499.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium ICC168] gi|282949088|emb|CBG88694.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium ICC168] Length = 309 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 148 GLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 207 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + L++ G+ + ++ ++ G A P ++ NRRI +LV + Sbjct: 208 GYSNWELSADRANASRRELVQGGLDDGKVLRVVGMAATMRLSDRGPEDAVNRRISLLVLN 267 Query: 341 RQG 343 RQ Sbjct: 268 RQA 270 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ A GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSHP-IVVVKRRKAKGHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T D ++P Sbjct: 61 EYFRTPLATAVTGGHRFSDSESP 83 >gi|254438344|ref|ZP_05051838.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307] gi|198253790|gb|EDY78104.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307] Length = 275 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 2/67 (2%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 GDK N IIIK+K I ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K Sbjct: 4 GDK--ANAPVIIIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFLMMWLLNATTEQQRKG 61 Query: 65 IEQYFNP 71 + YF P Sbjct: 62 LADYFAP 68 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 LV ++ V+ T G++I + + + P+F S+ P P I + T Sbjct: 139 LVQQEALRHVVTRVTDEGLIIEVFARDDAPLFISESTEPAPVLIELTTMFARTFDLVTNP 198 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 ++I GHT P R W +S RA + ++L G+ RI++I+G A L + Sbjct: 199 VAIEGHTRTRPLVIAERPVWDISTGRAETVRRLLEAGGLDSLRIARITGNADRDLA-RVE 257 Query: 326 PMNSANRRIDILV 338 ++ N RI+I++ Sbjct: 258 ALSVRNNRIEIIL 270 >gi|186473029|ref|YP_001860371.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184195361|gb|ACC73325.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 327 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL+ L K+S+ + A K + T G+ I I+D PMF SS + Sbjct: 134 RLEQLKSKLSALIEDTPALKAFKDQIRISITNEGLRIEIVDTLKRPMFATGSSKLQSYAV 193 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L +IG L ISI GHTDA + N NW LS +RA +A + L+ G+ ED Sbjct: 194 EILTRIGAALNDVDNRISIAGHTDAVTYANGPAGYSNWELSSERANAARRALVAGGMRED 253 Query: 308 RISKISGFA---HHRLKIASDPMNSANRRIDILV 338 ++ ++ G A +A +P NRRI +LV Sbjct: 254 KLLQVRGLADVLPLNANVADEPT---NRRISVLV 284 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 36/51 (70%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 +WKI YADF+T +MAFFL+MW++ +T K+ IE YFN +L+ ++G Sbjct: 36 AWKIAYADFVTAMMAFFLLMWLLGSTSKYDKQGIEDYFNTPLSSLLGGNEG 86 >gi|332187888|ref|ZP_08389621.1| ompA family protein [Sphingomonas sp. S17] gi|332012049|gb|EGI54121.1| ompA family protein [Sphingomonas sp. S17] Length = 297 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + V F T +G+ I ++D + MF ++ P ++ I + +A I IRG Sbjct: 160 LAQQVRFIPTDSGLRIDLVDNADYSMFSMGTTSLEPAASQLIGTIAKTVADVPNTIMIRG 219 Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HTD+ P+ + A +NW LS RA + + L G+ E R +I G A I +P + Sbjct: 220 HTDSVPYGDPRAMNNWMLSSGRAEATRRRLAAGGLPESRFERIEGVADREPMITGNPSDP 279 Query: 330 ANRRIDILVEDRQG 343 NRR+ I + R+G Sbjct: 280 RNRRVAITLLYRKG 293 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 HG KN E + +I+KK +A ++ G+WK+ YADF+T +MAFFL++W++ AT + +K Sbjct: 6 HG-KN-EPPKIVIVKKIIADGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEKQRK 63 Query: 64 AIEQYFNP 71 I YF P Sbjct: 64 GIADYFAP 71 >gi|239908607|ref|YP_002955349.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239798474|dbj|BAH77463.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 346 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD 283 + + I+D+ P++D LP+ +L + +V+ ++I GHTDA + A Sbjct: 183 VRVEIMDKAERPLYDLGGVALLPDAQRILAAVTDVIRKEGVKVAIEGHTDAYRYSG-AYS 241 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS RA +A + ++ +G++ D +++++G++ R + P + NRRI +L+ Sbjct: 242 NWDLSAGRALAARRFMVGAGLNPDAVAEVTGYSDTRPYVPGKPYDPKNRRISLLL 296 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 GSWK+ YAD +T +MAFFL+MW+++ + K+ I YFN F Sbjct: 25 GSWKVAYADLVTAMMAFFLLMWLLSNAPQEKKEEIANYFNEF 66 >gi|156933520|ref|YP_001437436.1| flagellar motor protein MotB [Cronobacter sakazakii ATCC BAA-894] gi|156531774|gb|ABU76600.1| hypothetical protein ESA_01340 [Cronobacter sakazakii ATCC BAA-894] Length = 310 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL +S+ GHTD P Sbjct: 143 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTDDFP 202 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRR 333 + N R NW LS DRA ++ + L+ G+ + ++ ++ G A +++A N A NRR Sbjct: 203 YANGERGYSNWELSADRANASRRELVIGGLDDGKVLRVVGMAAT-MRLAEKGANEALNRR 261 Query: 334 IDILVEDRQ 342 I +LV ++Q Sbjct: 262 ISLLVLNKQ 270 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 43/79 (54%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 5 NHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYFR 64 Query: 71 PFGKNLMTASKGIFDEQNP 89 +T I D ++P Sbjct: 65 TPLSAAITGGHRIADSESP 83 >gi|50120622|ref|YP_049789.1| flagellar motor protein [Pectobacterium atrosepticum SCRI1043] gi|49611148|emb|CAG74594.1| chemotaxis protein [Pectobacterium atrosepticum SCRI1043] Length = 351 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID +N PMF S+ P +L+ I ++ +SI GHTD Sbjct: 137 LLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPIMNDFPNKLSISGHTDD 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + R NW LS DRA ++ + L+ G+S+ ++ ++ G A LK A+ ++ N Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELIWGGLSDGKVLRVVGMAATMSLKQAASGNDAIN 256 Query: 332 RRIDILVEDRQG 343 RRI +LV RQ Sbjct: 257 RRISLLVLSRQA 268 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 34/57 (59%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60 >gi|253688988|ref|YP_003018178.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755566|gb|ACT13642.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 350 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID +N PMF S+ P +L+ I +L +SI GHTD Sbjct: 137 LLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDFPNKLSISGHTDD 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + R NW LS DRA ++ + L+ G+S+ ++ ++ G A LK A+ ++ N Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMNLKQATGGNDAIN 256 Query: 332 RRIDILVEDRQG 343 RRI +LV RQ Sbjct: 257 RRISLLVLSRQA 268 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 34/57 (59%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60 >gi|91977304|ref|YP_569963.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91683760|gb|ABE40062.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 286 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K V+FE T G+ + + DQ PMF + S++P T +++ ++ L + +SI GHT Sbjct: 147 KNVVFEETPLGLNLELTDQEGRPMFPEGSAVPYERTRMLIARLAAPLRATALRVSIVGHT 206 Query: 273 DASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 A+P + D + LS RA + QVL + G++ RI ++G P +AN Sbjct: 207 AAAPVNADDEYDAFDLSTSRANAVRQVLKREGLAASRIMLVAGKGDGEPLFPEAPTLAAN 266 Query: 332 RRIDI 336 RR+ I Sbjct: 267 RRVTI 271 >gi|85706141|ref|ZP_01037236.1| putative chemotaxis MotB protein [Roseovarius sp. 217] gi|85669305|gb|EAQ24171.1| putative chemotaxis MotB protein [Roseovarius sp. 217] Length = 287 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M++H N +IIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + Sbjct: 1 MSAH-----SNAAPVIIKRKKIVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQ 55 Query: 61 TKKAIEQYFNP 71 +K I YF+P Sbjct: 56 QRKGISDYFSP 66 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 LVAD ++ ++ T ++I I D +F+ + P +L+ + +LA + + Sbjct: 148 LVADETLRHIVTRLTDEELVIEIFDLPQAQLFEVDGVVATP----LLKDLTALLASAANL 203 Query: 266 I----SIRGHTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + ++ GHT A P +AR+ W LS RA Q+L G+S R+ +I+G A R Sbjct: 204 VVNDVALAGHTRAQPI-TLARNPVWDLSSSRANQFRQMLEAEGLSAKRMRRITGHA-DRT 261 Query: 321 KIASDPMNSANRRIDILV 338 DPM+ N R+++++ Sbjct: 262 SAVLDPMDLRNNRLEMIL 279 >gi|323945384|gb|EGB41438.1| OmpA family protein [Escherichia coli H120] Length = 148 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I I GHTDA ++N +NW LS DRA SA +VL ++G+ ED++ ++S A L A + Sbjct: 37 IIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKN 96 Query: 326 PMNSANRRIDILV 338 P ++ NRRI+I+V Sbjct: 97 PQSAGNRRIEIMV 109 >gi|227112504|ref|ZP_03826160.1| flagellar motor protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326903|ref|ZP_03830927.1| flagellar motor protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 351 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID +N PMF S+ P +L+ I +L +SI GHTD Sbjct: 137 LLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDFPNKLSISGHTDD 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + R NW LS DRA ++ + L+ G+S+ ++ ++ G A LK A+ ++ N Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMSLKQATGGNDAIN 256 Query: 332 RRIDILVEDRQG 343 RRI +LV RQ Sbjct: 257 RRISLLVLSRQA 268 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 34/57 (59%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60 >gi|317491635|ref|ZP_07950071.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921182|gb|EFV42505.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 329 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L G+ I IID +N PMF+ S+ P +L+ I +L IS+ GHTD Sbjct: 138 LLINMMDEGLRIQIIDSQNRPMFENGSARVEPYMRDILRAIAPILNDVPNKISLSGHTDD 197 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ + R NW LS DRA ++ + L+ G++E +I ++ G A + + S ++A N Sbjct: 198 LPYASGERGYSNWELSADRANASRRELIAGGLAEGKILRVVGMA-DTMSLKSQTSDAAIN 256 Query: 332 RRIDILV 338 RRI ILV Sbjct: 257 RRISILV 263 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N I++KK+ ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 5 NRPIILVKKRKPSKKGGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTKIAEYF 63 >gi|90423959|ref|YP_532329.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90105973|gb|ABD88010.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 283 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 I K V+FE T G+ + I+DQ PMF S +P T+++++K+ L + ISI G Sbjct: 142 ISKNVMFEETPQGLNLQIVDQEGRPMFPDGSPLPYERTMLLVRKLAAPLRATALRISIVG 201 Query: 271 HTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT +P R+ D + LS RA + Q+L G+ + ++G A P+ Sbjct: 202 HTSSTGAPGRD-DDDAFVLSWQRANTVRQILKGEGLPSSHVFAVTGKADSEPLFPDAPLL 260 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 261 AANRRVTI 268 >gi|114762178|ref|ZP_01441646.1| chemotaxis protein MotB [Pelagibaca bermudensis HTCC2601] gi|114545202|gb|EAU48205.1| chemotaxis protein MotB [Roseovarius sp. HTCC2601] Length = 277 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 41/57 (71%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +IIK+K ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + YF+P Sbjct: 10 VIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSP 66 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 74/137 (54%), Gaps = 12/137 (8%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +++D +++ ++ T G+++ + P+FD + P + L+ + V+A +++ Sbjct: 144 MISDTLMRHIVTRVTDEGLVVELFATEEAPLFDAQGA---PTEL--LRALSGVIAGVSDM 198 Query: 266 I----SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + +I GH A P +ARD +W +S A ++L+ G+S+ RI++++ A R Sbjct: 199 VTNPLAIEGHVGAYPI-VLARDPSWEVSTRHADRFRELLLADGLSKARINRVTAHA-DRE 256 Query: 321 KIASDPMNSANRRIDIL 337 ++PM+ N R++I+ Sbjct: 257 PAKNNPMDPRNTRLEII 273 >gi|162420339|ref|YP_001607210.1| flagellar motor protein MotB [Yersinia pestis Angola] gi|162353154|gb|ABX87102.1| chemotaxis MotB protein [Yersinia pestis Angola] Length = 421 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|170692674|ref|ZP_02883836.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170142330|gb|EDT10496.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 328 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 15/174 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235 P++ +A RLQ L +K+ S + K + T G+ I I+D +N P Sbjct: 119 PVNVVPTVAPADAARLQQLKEKLISLIEQSPTLKAFKDQIRISITNEGLRIEIVDSQNRP 178 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAY 293 MF S + +L +IG L ISI GHTDA P+ + NW LS +RA Sbjct: 179 MFASGSPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERAN 238 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS------ANRRIDILVEDR 341 +A + L+ G+ +++ ++ G A P+NS NRRI ILV ++ Sbjct: 239 AARRALVSGGMHGEKLLQVRGLADVL------PLNSNVVDEPTNRRISILVMNK 286 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 49/80 (61%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S G +++ I+ + K D ++ G+WKI YADF+T +MAFFL+MW++ +T K Sbjct: 6 SRGSEDEAPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFDK 65 Query: 63 KAIEQYFNPFGKNLMTASKG 82 + IE YFN +L+ S+G Sbjct: 66 QGIEDYFNTPLSSLLGGSEG 85 >gi|22125717|ref|NP_669140.1| flagellar motor protein MotB [Yersinia pestis KIM 10] gi|108807851|ref|YP_651767.1| flagellar motor protein MotB [Yersinia pestis Antiqua] gi|108812127|ref|YP_647894.1| flagellar motor protein MotB [Yersinia pestis Nepal516] gi|149366375|ref|ZP_01888409.1| chemotaxis MotB protein [Yersinia pestis CA88-4125] gi|165925475|ref|ZP_02221307.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938485|ref|ZP_02227042.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008640|ref|ZP_02229538.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210582|ref|ZP_02236617.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401678|ref|ZP_02307169.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422628|ref|ZP_02314381.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426350|ref|ZP_02318103.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928797|ref|YP_002346672.1| flagellar motor protein MotB [Yersinia pestis CO92] gi|229841656|ref|ZP_04461814.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843773|ref|ZP_04463916.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894516|ref|ZP_04509698.1| chemotaxis MotB protein [Yersinia pestis Pestoides A] gi|229902447|ref|ZP_04517566.1| chemotaxis MotB protein [Yersinia pestis Nepal516] gi|270490373|ref|ZP_06207447.1| flagellar motor protein MotB [Yersinia pestis KIM D27] gi|294504144|ref|YP_003568206.1| flagellar motor protein [Yersinia pestis Z176003] gi|21958635|gb|AAM85391.1|AE013785_4 lateral flagellar motor protein [Yersinia pestis KIM 10] gi|108775775|gb|ABG18294.1| chemotaxis MotB protein [Yersinia pestis Nepal516] gi|108779764|gb|ABG13822.1| chemotaxis MotB protein [Yersinia pestis Antiqua] gi|115347408|emb|CAL20310.1| chemotaxis MotB protein [Yersinia pestis CO92] gi|149290749|gb|EDM40824.1| chemotaxis MotB protein [Yersinia pestis CA88-4125] gi|165913600|gb|EDR32220.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922584|gb|EDR39735.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165993022|gb|EDR45323.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207762|gb|EDR52242.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958475|gb|EDR55496.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048783|gb|EDR60191.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054705|gb|EDR64509.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680493|gb|EEO76590.1| chemotaxis MotB protein [Yersinia pestis Nepal516] gi|229689381|gb|EEO81444.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694119|gb|EEO84167.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703535|gb|EEO90552.1| chemotaxis MotB protein [Yersinia pestis Pestoides A] gi|262366194|gb|ACY62751.1| flagellar motor protein [Yersinia pestis D182038] gi|270338877|gb|EFA49654.1| flagellar motor protein MotB [Yersinia pestis KIM D27] gi|294354603|gb|ADE64944.1| flagellar motor protein [Yersinia pestis Z176003] Length = 427 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|45441604|ref|NP_993143.1| flagellar motor protein MotB [Yersinia pestis biovar Microtus str. 91001] gi|145599064|ref|YP_001163140.1| flagellar motor protein MotB [Yersinia pestis Pestoides F] gi|45436465|gb|AAS62020.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str. 91001] gi|145210760|gb|ABP40167.1| chemotaxis MotB protein [Yersinia pestis Pestoides F] gi|320014810|gb|ADV98381.1| chemotaxis MotB protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 433 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|257097127|pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Ii) gi|257097128|pdb|2ZVY|B Chain B, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Ii) gi|257097129|pdb|2ZVZ|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Iii) gi|257097130|pdb|2ZVZ|B Chain B, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Iii) Length = 183 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 44 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 103 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 104 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 163 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 164 SLLVLNKQA 172 >gi|153950639|ref|YP_001400614.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 31758] gi|152962134|gb|ABS49595.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 31758] Length = 433 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|51596729|ref|YP_070920.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 32953] gi|186895791|ref|YP_001872903.1| flagellar motor protein MotB [Yersinia pseudotuberculosis PB1/+] gi|51590011|emb|CAH21644.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 32953] gi|186698817|gb|ACC89446.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 439 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|167466606|ref|ZP_02331310.1| flagellar motor protein MotB [Yersinia pestis FV-1] Length = 427 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YA MT +MAFFL + + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYAKVMTAMMAFFLGAVRLAVSSPQELPQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|170023989|ref|YP_001720494.1| flagellar motor protein MotB [Yersinia pseudotuberculosis YPIII] gi|169750523|gb|ACA68041.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] Length = 451 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD P+ R Sbjct: 146 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGER 205 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + NRRI ILV Sbjct: 206 GYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPVNRRISILV 263 Query: 339 EDRQ 342 ++Q Sbjct: 264 LNKQ 267 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|333010781|gb|EGK30207.1| lateral flagellar motor protein B [Shigella flexneri K-272] gi|333021279|gb|EGK40532.1| lateral flagellar motor protein B [Shigella flexneri K-227] Length = 256 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSI 243 A+ +KK +L + ++++++ + D ++ L E G+ + I D +N MF++ S+ Sbjct: 64 ALLKKKSATELGE-LATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQ 122 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +P +L ++ V I I GHTDA +N +NW LS DRA SA +VL ++G Sbjct: 123 IMPFFKTLLVELAPVFDSLDNKIIITGHTDAMANKNNIYNNWNLSGDRALSARRVLEEAG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 183 MPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 >gi|116624960|ref|YP_827116.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116228122|gb|ABJ86831.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 276 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G+ I +++ F+ +P +L+++ E L + I GHTD+ PF Sbjct: 128 TSDGLRIELLETEAGMFFESGRPLPTSTGSELLKRLAEELGKMPNHLLIEGHTDSKPFSG 187 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA +A +++ + V ++++++ GF +L+ DP +++NRR+ ++V Sbjct: 188 DGTYTNWELSSDRANAARRLMESNAVRHEQVAQVRGFGDRQLRHPEDPEHASNRRVSVIV 247 Query: 339 E 339 + Sbjct: 248 Q 248 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 15/134 (11%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPF 72 F+I KKKV ++ G+WK+ YADF+T +MA F+V+W+++A D+ K+AI +F NP Sbjct: 19 FVIKKKKVMHGG--HHGGAWKVAYADFVTAMMALFIVLWLMSA-DEKVKEAISAFFNNPT 75 Query: 73 GKN--LMTASKGIFDEQNPPERSSQNKIDLSIDEHIT--------KNSVDLKIGSTNQKK 122 G + T S G + P + +K+ I++ + K+ V++ I S + Sbjct: 76 GPGTQIGTDSAGTGNAIEVP-KEDMSKLREKIEQALKTVPNFRDLKDHVEMTITSDGLRI 134 Query: 123 QYQRLENNIFYLSN 136 + E +F+ S Sbjct: 135 ELLETEAGMFFESG 148 >gi|213647163|ref|ZP_03377216.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 275 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 108 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 167 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 168 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 227 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 228 SLLVLNKQA 236 >gi|260574379|ref|ZP_05842383.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259023275|gb|EEW26567.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 280 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%) Query: 197 KKISSTLSG--LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +K + L G + + ++ V+ + T G++I I D + P+F + + P P + + Sbjct: 133 EKALTALGGESMTMEAALRHVVTKVTDEGLVIEIFDLQEAPLFAEGTDDPQPVLRDIAKM 192 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + EVL ++ +++ G+ A P I W LS RA + ++ +G+ +R+ +ISG Sbjct: 193 LAEVLGLASNSVAVNGYVKAYPIMMIDNPVWDLSAARAQAMRDLIQTAGLPANRVQRISG 252 Query: 315 FAHHRLKIASDPMNSANRRIDILVEDR 341 +A H+ + +DP N R+++++ R Sbjct: 253 YADHK-PVTADPTAIRNNRVEVILLRR 278 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 31/40 (77%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +WK+ YADF+T +MAFFL+MWI+ AT + +K + YF+P Sbjct: 31 AWKVAYADFVTAMMAFFLLMWILGATTEKQRKGVADYFSP 70 >gi|294675563|ref|YP_003576178.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003] gi|294474383|gb|ADE83771.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003] Length = 283 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +IIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K I YFNP Sbjct: 10 VIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGIADYFNP 66 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 76/151 (50%), Gaps = 10/151 (6%) Query: 195 LAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +AK+I LS +V++ + + ++ + T G+++ D + P+F ++ P P Sbjct: 131 MAKEIEKALSATSGESMVSEQLARHIVTKVTDEGLIVEFFDLEDEPLFRPDTAEPEPILG 190 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSED 307 + + V + ++I GHT + P ++ R N W LS +RA ++ +G Sbjct: 191 EIAGMLTRVFGLTKNNVAINGHTRSYP--SMLRTNPVWDLSSERAQRMRILMETAGFDAA 248 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 R+ ++SGFA + + + M+ N R+++++ Sbjct: 249 RLQRVSGFADRKPAVETR-MSVRNNRLELIL 278 >gi|194434087|ref|ZP_03066356.1| chemotaxis protein MotB [Shigella dysenteriae 1012] gi|300951513|ref|ZP_07165348.1| chemotaxis protein MotB [Escherichia coli MS 116-1] gi|194417631|gb|EDX33731.1| chemotaxis protein MotB [Shigella dysenteriae 1012] gi|300449263|gb|EFK12883.1| chemotaxis protein MotB [Escherichia coli MS 116-1] gi|332095082|gb|EGJ00116.1| chemotaxis protein motB [Shigella dysenteriae 155-74] Length = 308 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM GV ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGVDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|148254925|ref|YP_001239510.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1] gi|146407098|gb|ABQ35604.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1] Length = 276 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/309 (22%), Positives = 120/309 (38%), Gaps = 66/309 (21%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M +L++FF+++ + D++ K + + FG + GI + P Sbjct: 15 GWFVTFADLMGLLVSFFVMLVAFSTMDNNKLKVVAGSMRDAFGVQSESRYSGIVESDGLP 74 Query: 91 ERSS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 R +N +S +E + S +Q +R N L +Q SL Sbjct: 75 TRPKLKNAAHVSPEETSREPS----------PEQEERQHTNGAKLKTDRQFALASASL-- 122 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ LQD+ + Sbjct: 123 ---------------------------------------RQALQDMPEMT---------- 133 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 I K ++FE T+ G+ + I+DQ MF S +P T +++K+ L + + I Sbjct: 134 EISKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLIEKLAAPLKATPLRVQIT 193 Query: 270 GHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHT A P R+ + LS DRA + Q+L + G+ I +SG A + DP Sbjct: 194 GHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSGKADTQPLFPDDPS 252 Query: 328 NSANRRIDI 336 +ANRR+ I Sbjct: 253 LAANRRVTI 261 >gi|261821136|ref|YP_003259242.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163] gi|261605149|gb|ACX87635.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163] Length = 350 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID +N PMF S+ P +L+ I +L +SI GHTD Sbjct: 137 LLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDFPNKLSISGHTDD 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + R NW LS DRA ++ + L G+S+ ++ ++ G A LK A+ ++ N Sbjct: 197 VQYTTGERGYSNWELSADRANASRRELTFGGLSDGKVLRVVGMAATMSLKQATSGNDAIN 256 Query: 332 RRIDILVEDRQG 343 RRI +LV +Q Sbjct: 257 RRISLLVLSKQA 268 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 34/57 (59%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYF 60 >gi|238758125|ref|ZP_04619305.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236] gi|238703663|gb|EEP96200.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236] Length = 364 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ R Sbjct: 112 GLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATGER 171 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK--IASDPMNSANRRIDIL 337 NW LS DRA ++ + L+ G+ + ++ ++ G A RLK + DP+ NRRI IL Sbjct: 172 GYSNWELSADRANASRRELLAGGLDDGKVLRVVGMASTMRLKEQTSDDPV---NRRISIL 228 Query: 338 VEDRQ 342 V ++Q Sbjct: 229 VLNKQ 233 >gi|213416605|ref|ZP_03349749.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 170 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 3 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 62 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 63 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 122 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 123 SLLVLNKQA 131 >gi|16760871|ref|NP_456488.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141437|ref|NP_804779.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163277|ref|ZP_03348987.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213622329|ref|ZP_03375112.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|25298889|pir||AF0746 motility protein B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503168|emb|CAD05673.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhi] gi|29137064|gb|AAO68628.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 309 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 262 SLLVLNKQ 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83 >gi|300904777|ref|ZP_07122605.1| chemotaxis protein MotB [Escherichia coli MS 84-1] gi|301305233|ref|ZP_07211330.1| chemotaxis protein MotB [Escherichia coli MS 124-1] gi|300403291|gb|EFJ86829.1| chemotaxis protein MotB [Escherichia coli MS 84-1] gi|300839439|gb|EFK67199.1| chemotaxis protein MotB [Escherichia coli MS 124-1] gi|315257277|gb|EFU37245.1| chemotaxis protein MotB [Escherichia coli MS 85-1] Length = 308 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMCLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|213426377|ref|ZP_03359127.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 309 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 262 SLLVLNKQ 269 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83 >gi|16765264|ref|NP_460879.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413159|ref|YP_150234.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180499|ref|YP_216916.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613518|ref|YP_001587483.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552438|ref|ZP_02346191.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994228|ref|ZP_02575320.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168238556|ref|ZP_02663614.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241555|ref|ZP_02666487.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259799|ref|ZP_02681772.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462543|ref|ZP_02696474.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820750|ref|ZP_02832750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444100|ref|YP_002041189.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450845|ref|YP_002045977.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472145|ref|ZP_03078129.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737421|ref|YP_002114959.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248088|ref|YP_002146098.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264977|ref|ZP_03165051.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362085|ref|YP_002141722.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243979|ref|YP_002215160.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390054|ref|ZP_03216665.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931026|ref|ZP_03221852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352375|ref|YP_002226176.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856557|ref|YP_002243208.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583574|ref|YP_002637372.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912501|ref|ZP_04656338.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2494511|sp|P55892|MOTB_SALTY RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|1764128|gb|AAC45266.1| MotB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420459|gb|AAL20838.1| enables flagellar motor rotation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127416|gb|AAV76922.1| motility protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128132|gb|AAX65835.1| enables flagellar motor rotation, linking torque machinery to cell wall [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362882|gb|ABX66650.1| hypothetical protein SPAB_01238 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402763|gb|ACF62985.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409149|gb|ACF69368.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458509|gb|EDX47348.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712923|gb|ACF92144.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634203|gb|EDX52555.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093562|emb|CAR59024.1| motility protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211791|gb|ACH49188.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243232|gb|EDY25852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288646|gb|EDY28021.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938495|gb|ACH75828.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602499|gb|EDZ01045.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320070|gb|EDZ05275.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272156|emb|CAR37011.1| motility protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322895|gb|EDZ10734.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327891|gb|EDZ14655.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339183|gb|EDZ25947.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342679|gb|EDZ29443.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350979|gb|EDZ37610.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708360|emb|CAR32664.1| motility protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468101|gb|ACN45931.1| flagellar motor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247092|emb|CBG24913.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993909|gb|ACY88794.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158442|emb|CBW17951.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912916|dbj|BAJ36890.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085458|emb|CBY95239.1| Chemotaxis protein motB Motility protein B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224566|gb|EFX49629.1| Flagellar motor rotation protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616922|gb|EFY13830.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618161|gb|EFY15053.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625831|gb|EFY22650.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626283|gb|EFY23093.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632697|gb|EFY29442.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639041|gb|EFY35734.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640481|gb|EFY37134.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646010|gb|EFY42527.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655476|gb|EFY51784.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660255|gb|EFY56493.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322668121|gb|EFY64280.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674119|gb|EFY70213.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675527|gb|EFY71601.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683059|gb|EFY79075.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686753|gb|EFY82731.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714975|gb|EFZ06546.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130206|gb|ADX17636.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195356|gb|EFZ80536.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199248|gb|EFZ84343.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204163|gb|EFZ89175.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323211878|gb|EFZ96707.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217488|gb|EGA02207.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221977|gb|EGA06366.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231510|gb|EGA15623.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235952|gb|EGA20031.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240522|gb|EGA24565.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245414|gb|EGA29414.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250185|gb|EGA34077.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253633|gb|EGA37461.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258567|gb|EGA42233.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259386|gb|EGA43023.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266189|gb|EGA49679.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|326622909|gb|EGE29254.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627426|gb|EGE33769.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988815|gb|AEF07798.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 309 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 262 SLLVLNKQ 269 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83 >gi|238026965|ref|YP_002911196.1| OmpA/MotB [Burkholderia glumae BGR1] gi|237876159|gb|ACR28492.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 312 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + TTR G+ I I+D R+ PMF SS +L +IG VL +S+ GHTDA Sbjct: 157 IRLSTTREGLRIEIVDSRSRPMFATGSSRLEDYAYDILFQIGGVLNQVDNRVSLAGHTDA 216 Query: 275 SPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ NW LS +RA +A + L+ + ED++ ++ G A NR Sbjct: 217 VPYSGGIAGYSNWELSSERANAARRALVAGHLREDKLLQVRGLADVLPFDRGVADAEVNR 276 Query: 333 RIDILVEDRQ 342 RI ILV +++ Sbjct: 277 RISILVLNKE 286 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 31/40 (77%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 G+WKI YADF+T +MAFFL+MW++ +T ++ IE YFN Sbjct: 35 GAWKIAYADFVTAMMAFFLLMWLLGSTSKYERQGIESYFN 74 >gi|213024875|ref|ZP_03339322.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 189 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 22 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 81 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 82 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 141 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 142 SLLVLNKQA 150 >gi|262362261|gb|ACY58982.1| chemotaxis MotB protein [Yersinia pestis D106004] Length = 276 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 6/132 (4%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L G+ I IID +N PMF S+ P +L+ I +L +S+ GHTD Sbjct: 138 LLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDD 197 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLK-IASDPMNSA 330 P+ R NW LS DRA ++ + L+ G+ E +I ++ G A RLK ASD + Sbjct: 198 LPYARGERGYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQASD--DPV 255 Query: 331 NRRIDILVEDRQ 342 NRRI ILV +++ Sbjct: 256 NRRISILVLNKR 267 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 F 69 F Sbjct: 63 F 63 >gi|161502956|ref|YP_001570068.1| flagellar motor protein MotB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864303|gb|ABX20926.1| hypothetical protein SARI_01018 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 309 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 262 SLLVLNKQ 269 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + + Sbjct: 2 KNQAHP-IVVVKRRKHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQLA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83 >gi|323224726|gb|EGA08995.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 309 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 262 SLLVLNKQ 269 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T G+ ++P Sbjct: 61 EYFRTPLATAVTGGTGLPIAESP 83 >gi|258513971|ref|YP_003190193.1| OmpA/MotB domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257777676|gb|ACV61570.1| OmpA/MotB domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 275 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 PP+ ++I K ++L++L K++ + N+ +L G+++S +D Sbjct: 78 PPIQVQQI--QKEAEQLKELQKELHDLIE---KKNLTGHILVSIEERGLVVSFLDPV--- 129 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294 +F S+ P+ ++Q++G++L S I I GHTD P I NW LS RA S Sbjct: 130 LFPLGSAQLTPKAKNIVQEVGQILLKSDNYIRIEGHTDDIPINTAIYPSNWELSAARATS 189 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 Q L+K+ +R++ +G+ +R ++ +D M+ NRR+DI+V Sbjct: 190 VVQELIKTMSFPPERLAA-TGYGEYRPRVPNDSMDHKQMNRRVDIVV 235 >gi|269138690|ref|YP_003295391.1| flagellar motor protein [Edwardsiella tarda EIB202] gi|267984351|gb|ACY84180.1| flagellar motor protein [Edwardsiella tarda EIB202] gi|304558696|gb|ADM41360.1| Flagellar motor rotation protein MotB [Edwardsiella tarda FL6-60] Length = 332 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N R Sbjct: 148 GLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIAPILNELPNKISLSGHTDDLPYANGER 207 Query: 283 D--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANR 332 NW LS DRA ++ + L+ G++ ++I ++ G A D MN + NR Sbjct: 208 GYSNWELSADRANASRRELIAGGLAGNKILRVVGMA--------DTMNLRNLAGNAAVNR 259 Query: 333 RIDILV 338 RI ILV Sbjct: 260 RISILV 265 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 I++KKK ++ G+WKI YADFMT +MAFFLVMW++ I +YF Sbjct: 9 ILVKKKRGGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYF 63 >gi|295095518|emb|CBK84608.1| Flagellar motor protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 309 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242 KKR+ Q KK+ L L+ AD ++ + + + G+ I IID +N PMF S+ Sbjct: 108 KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 P +L+ I VL IS+ GHTD P+ + NW LS DRA ++ + L+ Sbjct: 168 DVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYATGEKGYSNWELSADRANASRRELV 227 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 228 AGGLDDGKVLRVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSH-PIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + +P Sbjct: 61 EYFRTPLATAVTGGPRISNSDSP 83 >gi|209919315|ref|YP_002293399.1| flagellar motor protein MotB [Escherichia coli SE11] gi|218554477|ref|YP_002387390.1| flagellar motor protein MotB [Escherichia coli IAI1] gi|209912574|dbj|BAG77648.1| chemotaxis protein MotB [Escherichia coli SE11] gi|218361245|emb|CAQ98829.1| protein that enables flagellar motor rotation [Escherichia coli IAI1] gi|324017971|gb|EGB87190.1| chemotaxis protein MotB [Escherichia coli MS 117-3] Length = 308 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|56551498|ref|YP_162337.1| OmpA/MotB domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543072|gb|AAV89226.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 326 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 47/71 (66%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +KN+ + II+KK + ++ G+WK+ YADF+T +MAFFL++W++ AT++ Sbjct: 1 MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60 Query: 61 TKKAIEQYFNP 71 +K I YFNP Sbjct: 61 ERKGIADYFNP 71 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-- 277 TR G+ I ++DQ + MF + +P ++ ++ V+ +I +RGHTDA P+ Sbjct: 164 TREGLRIDLVDQSDFAMFTLGTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYAS 223 Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 +N+ +NW LS RA + + L+ GV +R +I G A + + M+ NRR+ I Sbjct: 224 GQNV--NNWTLSAARADATRRGLIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSI 281 >gi|241761142|ref|ZP_04759231.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374761|gb|EER64222.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 326 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 47/71 (66%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +KN+ + II+KK + ++ G+WK+ YADF+T +MAFFL++W++ AT++ Sbjct: 1 MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60 Query: 61 TKKAIEQYFNP 71 +K I YFNP Sbjct: 61 ERKGIADYFNP 71 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-- 277 TR G+ I ++DQ + MF + +P ++ ++ V+ +I +RGHTDA P+ Sbjct: 164 TREGLRIDLVDQSDFAMFTLGTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYAS 223 Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 +N+ +NW LS RA + + L+ GV +R +I G A + + M+ NRR+ I Sbjct: 224 GQNV--NNWTLSAARADATRRGLIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSI 281 >gi|260752895|ref|YP_003225788.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552258|gb|ACV75204.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 326 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 47/71 (66%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +KN+ + II+KK + ++ G+WK+ YADF+T +MAFFL++W++ AT++ Sbjct: 1 MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60 Query: 61 TKKAIEQYFNP 71 +K I YFNP Sbjct: 61 ERKGIADYFNP 71 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-- 277 TR G+ I ++DQ + MF + +P ++ ++ V+ +I +RGHTDA P+ Sbjct: 164 TREGLRIDLVDQSDFAMFTLGTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYAS 223 Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 +N+ +NW LS RA + + L+ GV +R +I G A + + M+ NRR+ I Sbjct: 224 GQNV--NNWTLSAARADATRRGLIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSI 281 >gi|293415204|ref|ZP_06657847.1| chemotaxis protein MotB [Escherichia coli B185] gi|291432852|gb|EFF05831.1| chemotaxis protein MotB [Escherichia coli B185] Length = 308 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGNRISNSESP 82 >gi|73532502|dbj|BAE19809.1| chemotaxis protein [Edwardsiella tarda] Length = 222 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N R Sbjct: 38 GLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIAPILNELPNKISLSGHTDDLPYANGER 97 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANR 332 NW LS DRA ++ + L+ G++ ++I ++ G A D MN + NR Sbjct: 98 GYSNWELSADRANASRRELIAGGLAGNKILRVVGMA--------DTMNLRNLAGNAAVNR 149 Query: 333 RIDILV 338 RI ILV Sbjct: 150 RISILV 155 >gi|163738038|ref|ZP_02145454.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] gi|161388654|gb|EDQ13007.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] Length = 278 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/328 (21%), Positives = 132/328 (40%), Gaps = 100/328 (30%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83 +WK+ YADF+T +MAFF++MW++NAT + +K + YF+P G N + Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFNGDSM 86 Query: 84 FDEQNPPERSS-----------QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 F E+ P+ + Q K D +++ + + D +Q++ LE + Sbjct: 87 FTEEIKPQNGTGASDISPADAQQAKGDSGVEQDKDREAAD---------EQFRALEEQLK 137 Query: 133 YLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 E ++ +TR +++G + + D E+S +E P L Sbjct: 138 GRGGESMVSIEMAQHIITRVTDEGL-VVELFDTEESPLFKEGTAEPTL------------ 184 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +D+ K +S ++G+V +NI G Sbjct: 185 LFRDIVKMVSR-VTGVVENNIAIG------------------------------------ 207 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 G + +H+ V + +P W LS RA + +L G R+ Sbjct: 208 -----GHIRSHAVVVAN-------NPV-------WELSHARADATRVMLESGGTRSKRMH 248 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 +++G A +L S+PM++ N R++I++ Sbjct: 249 RVTGHADRKL-TDSNPMSARNNRVEIIL 275 >gi|331663388|ref|ZP_08364298.1| chemotaxis protein MotB [Escherichia coli TA143] gi|331059187|gb|EGI31164.1| chemotaxis protein MotB [Escherichia coli TA143] Length = 366 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 205 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 264 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 265 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 324 Query: 341 RQG 343 +Q Sbjct: 325 KQA 327 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 60 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 117 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 118 EYFRTPLATAVTGGDRISNSESP 140 >gi|319944147|ref|ZP_08018425.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599] gi|319742641|gb|EFV95050.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599] Length = 309 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 12/110 (10%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89 G+WKI YADF+T +MAFFL+MW++++ ++T K I +YF P +L+ S G+ D P Sbjct: 27 GAWKIAYADFVTAMMAFFLLMWLLSSASENTLKGISEYFQQPLKLSLIGGS-GVGDATAP 85 Query: 90 PERSSQN--KIDLSIDEHITKN---SVDLKIGSTNQKKQYQRLENNIFYL 134 + + D +++ ITK D+K+ +K +RLE +I + Sbjct: 86 VPGGGTDLTRKDGQVNKGITKGKDSKKDVKL-----QKLKERLEASIMQV 130 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 5/157 (3%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K+ +LQ L +++ +++ + A ++ + E T G+ I I+D P+F S L Sbjct: 111 KKDVKLQKLKERLEASIMQVPALEALRDQIRLEMTVDGLSIQIVDASKKPLFASGKSTVL 170 Query: 246 -PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD---NWRLSLDRAYSAYQVLMK 301 P +++ IG++L +S+ GHTDA+P+ + NW LS +RA S+ + L++ Sbjct: 171 SPNMRELMRTIGKLLNEVENPVSLSGHTDATPYAGGSTGGYSNWELSTERANSSRRELVQ 230 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 G+ ++I ++ G ++P + NRRI I+V Sbjct: 231 GGMDPNKILRVQGLGAVVPLDKTNPNDPMNRRIAIVV 267 >gi|323165315|gb|EFZ51103.1| chemotaxis protein motB [Shigella sonnei 53G] Length = 275 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 114 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 173 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 174 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 233 Query: 341 RQG 343 +Q Sbjct: 234 KQA 236 >gi|157145319|ref|YP_001452639.1| flagellar motor protein MotB [Citrobacter koseri ATCC BAA-895] gi|157082524|gb|ABV12202.1| hypothetical protein CKO_01059 [Citrobacter koseri ATCC BAA-895] Length = 308 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRGIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + R NW LS DRA ++ + L+ G+ + ++ ++ G A P ++ NRRI Sbjct: 201 YASGERGYSNWELSADRANASRRELVVGGLDDGKVLRVVGMAATMRLSDRGPDDAINRRI 260 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 261 SLLVLNKQ 268 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + II+ K+ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQPHP--IIVVKRRKHKGHGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAITGGHRIANSESP 82 >gi|325525470|gb|EGD03283.1| flagellar motor protein MotB [Burkholderia sp. TJI49] Length = 201 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 50/242 (20%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW+++A K I +YFN P Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAEYFNTPLKA 68 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + +RSSQ D SI I DL S+ +R + Sbjct: 69 ALFGSG----------DRSSQ---DSSI---INGGGRDL---SSVDAGTLRRTDGT---- 105 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 L K D L+ ++ + E L L + + A++ L+ Sbjct: 106 ----------TPLAERVAKPVDEAAQAQLQGALERREQARLHDLQIKLMAAIEANPTLRQ 155 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++I ++T G+ I I+D + PMF SS P +L++ Sbjct: 156 FKQQIR----------------IDSTLLGLRIEIVDTQKRPMFAMSSDRVEPYMRDILRE 199 Query: 255 IG 256 IG Sbjct: 200 IG 201 >gi|209767218|gb|ACI81921.1| chemotaxis protein MotB [Escherichia coli] gi|320647103|gb|EFX15936.1| flagellar motor protein MotB [Escherichia coli O157:H- str. 493-89] gi|320652386|gb|EFX20684.1| flagellar motor protein MotB [Escherichia coli O157:H- str. H 2687] Length = 308 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|323158625|gb|EFZ44639.1| chemotaxis protein motB [Escherichia coli E128010] Length = 275 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 114 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 173 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 174 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 233 Query: 341 RQG 343 +Q Sbjct: 234 KQA 236 >gi|333003303|gb|EGK22849.1| chemotaxis protein motB [Shigella flexneri K-218] Length = 265 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 98 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 157 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 158 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 217 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 218 SLLVLNKQA 226 >gi|256022446|ref|ZP_05436311.1| flagellar motor protein MotB [Escherichia sp. 4_1_40B] gi|300917528|ref|ZP_07134185.1| chemotaxis protein MotB [Escherichia coli MS 115-1] gi|300415233|gb|EFJ98543.1| chemotaxis protein MotB [Escherichia coli MS 115-1] Length = 308 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|24113274|ref|NP_707784.1| flagellar motor protein MotB [Shigella flexneri 2a str. 301] gi|30063341|ref|NP_837512.1| flagellar motor protein MotB [Shigella flexneri 2a str. 2457T] gi|110805869|ref|YP_689389.1| flagellar motor protein MotB [Shigella flexneri 5 str. 8401] gi|24052278|gb|AAN43491.1| chemotaxis protein MotB [Shigella flexneri 2a str. 301] gi|30041593|gb|AAP17321.1| chemotaxis protein MotB [Shigella flexneri 2a str. 2457T] gi|110615417|gb|ABF04084.1| flagellar motor protein [Shigella flexneri 5 str. 8401] gi|281601336|gb|ADA74320.1| Chemotaxis protein MotB [Shigella flexneri 2002017] gi|332757207|gb|EGJ87544.1| chemotaxis protein motB [Shigella flexneri 2747-71] gi|332757449|gb|EGJ87784.1| chemotaxis protein motB [Shigella flexneri K-671] gi|332766620|gb|EGJ96824.1| motB protein, enables flagellar motor rotation, linking torque machinery to cell wall [Shigella flexneri 2930-71] gi|333004150|gb|EGK23682.1| chemotaxis protein motB [Shigella flexneri K-272] gi|333017634|gb|EGK36946.1| chemotaxis protein motB [Shigella flexneri K-304] Length = 308 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|313650105|gb|EFS14518.1| chemotaxis protein motB [Shigella flexneri 2a str. 2457T] gi|332756040|gb|EGJ86393.1| chemotaxis protein motB [Shigella flexneri 4343-70] gi|333017760|gb|EGK37067.1| chemotaxis protein motB [Shigella flexneri K-227] Length = 275 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 114 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 173 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 174 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 233 Query: 341 RQG 343 +Q Sbjct: 234 KQA 236 >gi|260868487|ref|YP_003234889.1| MotB protein [Escherichia coli O111:H- str. 11128] gi|257764843|dbj|BAI36338.1| MotB protein [Escherichia coli O111:H- str. 11128] gi|323180688|gb|EFZ66233.1| chemotaxis protein motB [Escherichia coli 1180] Length = 308 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDLISNSESP 82 >gi|256829772|ref|YP_003158500.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578948|gb|ACU90084.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 300 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ +T G+ I ++ P FD +SS + VL+ I + + I++ GHTDA Sbjct: 129 LIIDTFDNGVRIQMLYGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVEGHTDA 188 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P + NW LS DRA SA +L + G+ R+ +++G+A + I +P + NR Sbjct: 189 VPLGGPSSRYTNWELSTDRASSARVILEEFGLDPKRMVRVAGYAATQPLIRENPEDPRNR 248 Query: 333 RIDILV 338 R+ IL+ Sbjct: 249 RVSILL 254 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 27/160 (16%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---------------GKN- 75 +WKI YAD +T +MAFFL+MW++N ++ K+ + YF F G++ Sbjct: 24 AWKIAYADLVTAMMAFFLLMWLLNNVSEEKKEQLSIYFKEFSVIDGLPPSMSVGAGGQSA 83 Query: 76 --------LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 +M + G+F E E + + I+E + + +L I + + + Q L Sbjct: 84 ADPQLKPLIMEGTTGMFAEGKSQEEILKEAMAKMIEERLKEYKEELIIDTFDNGVRIQML 143 Query: 128 --ENNIFYLS-NSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 E N F+ S +SQ + +N L ++ +DL +E Sbjct: 144 YGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVE 183 >gi|293410200|ref|ZP_06653776.1| motB [Escherichia coli B354] gi|291470668|gb|EFF13152.1| motB [Escherichia coli B354] Length = 241 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 74 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 133 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 134 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 193 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 194 SLLVLNKQ 201 >gi|320177401|gb|EFW52402.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC 74-1112] Length = 308 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 207 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266 Query: 341 RQG 343 +Q Sbjct: 267 KQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQTHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|315617885|gb|EFU98483.1| chemotaxis protein motB [Escherichia coli 3431] Length = 265 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 98 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 157 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 158 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 217 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 218 SLLVLNKQA 226 >gi|307131627|ref|YP_003883643.1| flagellar motor rotation protein motB [Dickeya dadantii 3937] gi|306529156|gb|ADM99086.1| Flagellar motor rotation protein motB [Dickeya dadantii 3937] Length = 376 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + + R NW LS DRA ++ + L+ G++E ++ ++ G A LK A ++ N Sbjct: 195 AQYAMGERGYSNWELSADRANASRRELIIGGLAEGKVLRVVGMADTMNLKQAKGGSDAIN 254 Query: 332 RRIDILVEDRQ 342 RRI ++V ++Q Sbjct: 255 RRISLVVLNKQ 265 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 42/77 (54%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63 Query: 73 GKNLMTASKGIFDEQNP 89 K +T+ + D NP Sbjct: 64 LKIAITSGPKMSDASNP 80 >gi|331673414|ref|ZP_08374182.1| chemotaxis protein MotB [Escherichia coli TA280] gi|331069612|gb|EGI40999.1| chemotaxis protein MotB [Escherichia coli TA280] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|271500049|ref|YP_003333074.1| OmpA/MotB domain-containing protein [Dickeya dadantii Ech586] gi|270343604|gb|ACZ76369.1| OmpA/MotB domain protein [Dickeya dadantii Ech586] Length = 376 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 42/77 (54%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63 Query: 73 GKNLMTASKGIFDEQNP 89 K +T+ I D NP Sbjct: 64 LKIAITSGPKISDASNP 80 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + + R NW LS DRA ++ + L+ G+++ ++ ++ G A LK A ++ N Sbjct: 195 AQYAMGERGYSNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAIN 254 Query: 332 RRIDILVEDRQ 342 RRI ++V ++Q Sbjct: 255 RRISLVVLNKQ 265 >gi|146341585|ref|YP_001206633.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278] gi|146194391|emb|CAL78416.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278] Length = 276 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 71/311 (22%), Positives = 119/311 (38%), Gaps = 66/311 (21%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 W + +AD M ++M+FF+++ + D++ K + FG + GI + P Sbjct: 15 GWFVTFADLMGLMMSFFVMLVAFSTMDNNKLKIVAGSMREAFGVQSESRYSGIVESDGLP 74 Query: 91 ERSS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 R +N +S +E + S +Q +R N L +Q SL Sbjct: 75 TRPKLKNAAHISPEETSREPS----------PEQEERQHTNGAKLKTDRQFALASASL-- 122 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ LQD+ + Sbjct: 123 ---------------------------------------RQALQDMPEMT---------- 133 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 I K ++FE T+ G+ + I+DQ MF S P T +++K+ L + + I Sbjct: 134 EISKHIMFEETKQGLNLEIVDQDGRSMFADGSKTPYDRTRRLIEKLAAPLKATPLRVQIT 193 Query: 270 GHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHT A P R+ + LS DRA + Q+L + G+ I +SG A + DP Sbjct: 194 GHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSGKADTQPLFPDDPS 252 Query: 328 NSANRRIDILV 338 +ANRR+ I + Sbjct: 253 LAANRRVTITL 263 >gi|15802301|ref|NP_288326.1| flagellar motor protein MotB [Escherichia coli O157:H7 EDL933] gi|15831853|ref|NP_310626.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. Sakai] gi|16129841|ref|NP_416403.1| protein that enables flagellar motor rotation [Escherichia coli str. K-12 substr. MG1655] gi|89108729|ref|AP_002509.1| protein that enables flagellar motor rotation [Escherichia coli str. K-12 substr. W3110] gi|157158423|ref|YP_001463195.1| flagellar motor protein MotB [Escherichia coli E24377A] gi|157161361|ref|YP_001458679.1| flagellar motor protein MotB [Escherichia coli HS] gi|168757929|ref|ZP_02782936.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401] gi|168762313|ref|ZP_02787320.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501] gi|168770876|ref|ZP_02795883.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486] gi|168776560|ref|ZP_02801567.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196] gi|168783193|ref|ZP_02808200.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076] gi|168789758|ref|ZP_02814765.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869] gi|168801871|ref|ZP_02826878.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508] gi|170019766|ref|YP_001724720.1| flagellar motor protein MotB [Escherichia coli ATCC 8739] gi|170081544|ref|YP_001730864.1| hypothetical protein ECDH10B_2030 [Escherichia coli str. K-12 substr. DH10B] gi|170684155|ref|YP_001743353.1| flagellar motor protein MotB [Escherichia coli SMS-3-5] gi|188492393|ref|ZP_02999663.1| chemotaxis protein MotB [Escherichia coli 53638] gi|191168098|ref|ZP_03029897.1| chemotaxis protein MotB [Escherichia coli B7A] gi|193065441|ref|ZP_03046510.1| chemotaxis protein MotB [Escherichia coli E22] gi|193069870|ref|ZP_03050819.1| chemotaxis protein MotB [Escherichia coli E110019] gi|194429327|ref|ZP_03061853.1| chemotaxis protein MotB [Escherichia coli B171] gi|194439077|ref|ZP_03071160.1| chemotaxis protein MotB [Escherichia coli 101-1] gi|195939593|ref|ZP_03084975.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. EC4024] gi|208810604|ref|ZP_03252480.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206] gi|208816679|ref|ZP_03257799.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045] gi|208819881|ref|ZP_03260201.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042] gi|209397424|ref|YP_002270973.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115] gi|217329015|ref|ZP_03445096.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588] gi|218695455|ref|YP_002403122.1| flagellar motor protein MotB [Escherichia coli 55989] gi|218705389|ref|YP_002412908.1| flagellar motor protein MotB [Escherichia coli UMN026] gi|238901104|ref|YP_002926900.1| protein that enables flagellar motor rotation [Escherichia coli BW2952] gi|253773154|ref|YP_003035985.1| flagellar motor protein MotB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161949|ref|YP_003045057.1| flagellar motor protein MotB [Escherichia coli B str. REL606] gi|254793513|ref|YP_003078350.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. TW14359] gi|256017907|ref|ZP_05431772.1| flagellar motor protein MotB [Shigella sp. D9] gi|260844299|ref|YP_003222077.1| MotB protein [Escherichia coli O103:H2 str. 12009] gi|260855829|ref|YP_003229720.1| MotB protein [Escherichia coli O26:H11 str. 11368] gi|261227610|ref|ZP_05941891.1| protein that enables flagellar motor rotation [Escherichia coli O157:H7 str. FRIK2000] gi|261258224|ref|ZP_05950757.1| MotB protein [Escherichia coli O157:H7 str. FRIK966] gi|291283071|ref|YP_003499889.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615] gi|293405381|ref|ZP_06649373.1| motB [Escherichia coli FVEC1412] gi|293446276|ref|ZP_06662698.1| chemotaxis protein MotB [Escherichia coli B088] gi|297517349|ref|ZP_06935735.1| flagellar motor protein MotB [Escherichia coli OP50] gi|298381025|ref|ZP_06990624.1| chemotaxis protein motB [Escherichia coli FVEC1302] gi|300819874|ref|ZP_07100059.1| chemotaxis protein MotB [Escherichia coli MS 107-1] gi|300822336|ref|ZP_07102477.1| chemotaxis protein MotB [Escherichia coli MS 119-7] gi|300899142|ref|ZP_07117423.1| chemotaxis protein MotB [Escherichia coli MS 198-1] gi|300924982|ref|ZP_07140907.1| chemotaxis protein MotB [Escherichia coli MS 182-1] gi|300928923|ref|ZP_07144427.1| chemotaxis protein MotB [Escherichia coli MS 187-1] gi|300956597|ref|ZP_07168876.1| chemotaxis protein MotB [Escherichia coli MS 175-1] gi|301029341|ref|ZP_07192438.1| chemotaxis protein MotB [Escherichia coli MS 196-1] gi|301327680|ref|ZP_07220887.1| chemotaxis protein MotB [Escherichia coli MS 78-1] gi|301645593|ref|ZP_07245522.1| chemotaxis protein MotB [Escherichia coli MS 146-1] gi|307138554|ref|ZP_07497910.1| flagellar motor protein MotB [Escherichia coli H736] gi|307314199|ref|ZP_07593809.1| OmpA/MotB domain protein [Escherichia coli W] gi|309796000|ref|ZP_07690413.1| chemotaxis protein MotB [Escherichia coli MS 145-7] gi|312969933|ref|ZP_07784116.1| chemotaxis protein motB [Escherichia coli 1827-70] gi|331642507|ref|ZP_08343642.1| chemotaxis protein MotB [Escherichia coli H736] gi|331653299|ref|ZP_08354304.1| chemotaxis protein MotB [Escherichia coli M718] gi|331668586|ref|ZP_08369434.1| chemotaxis protein MotB [Escherichia coli TA271] gi|331677774|ref|ZP_08378449.1| chemotaxis protein MotB [Escherichia coli H591] gi|332278938|ref|ZP_08391351.1| flagellar motor rotation protein [Shigella sp. D9] gi|84028148|sp|P0AF07|MOTB_ECO57 RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|84028149|sp|P0AF06|MOTB_ECOLI RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|12515953|gb|AAG56879.1|AE005411_3 enables flagellar motor rotation, linking torque machinery to cell wall [Escherichia coli O157:H7 str. EDL933] gi|146883|gb|AAA24178.1| chemotaxis protein MotB [Escherichia coli] gi|1736548|dbj|BAA15710.1| protein that enables flagellar motor rotation [Escherichia coli str. K12 substr. W3110] gi|1788198|gb|AAC74959.1| protein that enables flagellar motor rotation [Escherichia coli str. K-12 substr. MG1655] gi|13362067|dbj|BAB36022.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. Sakai] gi|157067041|gb|ABV06296.1| chemotaxis protein MotB [Escherichia coli HS] gi|157080453|gb|ABV20161.1| chemotaxis protein MotB [Escherichia coli E24377A] gi|169754694|gb|ACA77393.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739] gi|169889379|gb|ACB03086.1| MotB [Escherichia coli str. K-12 substr. DH10B] gi|170521873|gb|ACB20051.1| chemotaxis protein MotB [Escherichia coli SMS-3-5] gi|187768100|gb|EDU31944.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196] gi|188487592|gb|EDU62695.1| chemotaxis protein MotB [Escherichia coli 53638] gi|188999462|gb|EDU68448.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076] gi|189355159|gb|EDU73578.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401] gi|189360307|gb|EDU78726.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486] gi|189367322|gb|EDU85738.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501] gi|189370705|gb|EDU89121.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869] gi|189376024|gb|EDU94440.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508] gi|190901896|gb|EDV61646.1| chemotaxis protein MotB [Escherichia coli B7A] gi|192926846|gb|EDV81471.1| chemotaxis protein MotB [Escherichia coli E22] gi|192956770|gb|EDV87224.1| chemotaxis protein MotB [Escherichia coli E110019] gi|194412634|gb|EDX28930.1| chemotaxis protein MotB [Escherichia coli B171] gi|194422036|gb|EDX38040.1| chemotaxis protein MotB [Escherichia coli 101-1] gi|208725120|gb|EDZ74827.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206] gi|208731022|gb|EDZ79711.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045] gi|208740004|gb|EDZ87686.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042] gi|209158824|gb|ACI36257.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115] gi|209767220|gb|ACI81922.1| chemotaxis protein MotB [Escherichia coli] gi|209767222|gb|ACI81923.1| chemotaxis protein MotB [Escherichia coli] gi|209767224|gb|ACI81924.1| chemotaxis protein MotB [Escherichia coli] gi|209767226|gb|ACI81925.1| chemotaxis protein MotB [Escherichia coli] gi|217318362|gb|EEC26789.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588] gi|218352187|emb|CAU97928.1| protein that enables flagellar motor rotation [Escherichia coli 55989] gi|218432486|emb|CAR13379.1| protein that enables flagellar motor rotation [Escherichia coli UMN026] gi|238863319|gb|ACR65317.1| protein that enables flagellar motor rotation [Escherichia coli BW2952] gi|242377610|emb|CAQ32366.1| MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324198|gb|ACT28800.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973850|gb|ACT39521.1| flagellar motor protein MotB [Escherichia coli B str. REL606] gi|253978044|gb|ACT43714.1| flagellar motor protein MotB [Escherichia coli BL21(DE3)] gi|254592913|gb|ACT72274.1| protein that enables flagellar motor rotation [Escherichia coli O157:H7 str. TW14359] gi|257754478|dbj|BAI25980.1| MotB protein [Escherichia coli O26:H11 str. 11368] gi|257759446|dbj|BAI30943.1| MotB protein [Escherichia coli O103:H2 str. 12009] gi|260448988|gb|ACX39410.1| OmpA/MotB domain protein [Escherichia coli DH1] gi|290762944|gb|ADD56905.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615] gi|291323106|gb|EFE62534.1| chemotaxis protein MotB [Escherichia coli B088] gi|291427589|gb|EFF00616.1| motB [Escherichia coli FVEC1412] gi|298278467|gb|EFI19981.1| chemotaxis protein motB [Escherichia coli FVEC1302] gi|299877767|gb|EFI85978.1| chemotaxis protein MotB [Escherichia coli MS 196-1] gi|300316579|gb|EFJ66363.1| chemotaxis protein MotB [Escherichia coli MS 175-1] gi|300357232|gb|EFJ73102.1| chemotaxis protein MotB [Escherichia coli MS 198-1] gi|300418857|gb|EFK02168.1| chemotaxis protein MotB [Escherichia coli MS 182-1] gi|300463077|gb|EFK26570.1| chemotaxis protein MotB [Escherichia coli MS 187-1] gi|300525219|gb|EFK46288.1| chemotaxis protein MotB [Escherichia coli MS 119-7] gi|300527571|gb|EFK48633.1| chemotaxis protein MotB [Escherichia coli MS 107-1] gi|300845775|gb|EFK73535.1| chemotaxis protein MotB [Escherichia coli MS 78-1] gi|301076125|gb|EFK90931.1| chemotaxis protein MotB [Escherichia coli MS 146-1] gi|306906168|gb|EFN36686.1| OmpA/MotB domain protein [Escherichia coli W] gi|308120450|gb|EFO57712.1| chemotaxis protein MotB [Escherichia coli MS 145-7] gi|309702112|emb|CBJ01427.1| chemotaxis protein MotB (motility protein B) [Escherichia coli ETEC H10407] gi|310338218|gb|EFQ03307.1| chemotaxis protein motB [Escherichia coli 1827-70] gi|315061195|gb|ADT75522.1| protein that enables flagellar motor rotation [Escherichia coli W] gi|315136532|dbj|BAJ43691.1| chemotaxis protein motB [Escherichia coli DH1] gi|320188589|gb|EFW63251.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. EC1212] gi|320198585|gb|EFW73185.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B] gi|320641743|gb|EFX11131.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. G5101] gi|320657987|gb|EFX25749.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658560|gb|EFX26254.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. USDA 5905] gi|320668458|gb|EFX35285.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. LSU-61] gi|323152620|gb|EFZ38896.1| chemotaxis protein motB [Escherichia coli EPECa14] gi|323174594|gb|EFZ60215.1| chemotaxis protein motB [Escherichia coli LT-68] gi|323186334|gb|EFZ71684.1| chemotaxis protein motB [Escherichia coli 1357] gi|323378228|gb|ADX50496.1| OmpA/MotB domain protein [Escherichia coli KO11] gi|323937148|gb|EGB33428.1| OmpA family protein [Escherichia coli E1520] gi|323940442|gb|EGB36633.1| OmpA family protein [Escherichia coli E482] gi|323961944|gb|EGB57543.1| OmpA family protein [Escherichia coli H489] gi|323972601|gb|EGB67804.1| OmpA family protein [Escherichia coli TA007] gi|324118949|gb|EGC12838.1| OmpA family protein [Escherichia coli E1167] gi|326342267|gb|EGD66048.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1044] gi|326343818|gb|EGD67580.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1125] gi|331039305|gb|EGI11525.1| chemotaxis protein MotB [Escherichia coli H736] gi|331049397|gb|EGI21469.1| chemotaxis protein MotB [Escherichia coli M718] gi|331063780|gb|EGI35691.1| chemotaxis protein MotB [Escherichia coli TA271] gi|331074234|gb|EGI45554.1| chemotaxis protein MotB [Escherichia coli H591] gi|332089624|gb|EGI94726.1| chemotaxis protein motB [Shigella boydii 5216-82] gi|332101290|gb|EGJ04636.1| flagellar motor rotation protein [Shigella sp. D9] gi|332343616|gb|AEE56950.1| chemotaxis protein MotB [Escherichia coli UMNK88] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|320178162|gb|EFW53139.1| Flagellar motor rotation protein MotB [Shigella boydii ATCC 9905] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 207 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266 Query: 341 RQG 343 +Q Sbjct: 267 KQA 269 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YA FMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYAGFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|261344163|ref|ZP_05971807.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541] gi|282567758|gb|EFB73293.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541] Length = 306 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I I+D N PMF S+I P +L+ I +L ISI GHTD Sbjct: 137 LLIDMINDGLRIQIVDSANRPMFKVGSAIVEPYMRDILRAIAPLLNDVPNRISISGHTDD 196 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ + A NW LS DRA ++ + L+ G+ E +I ++ G A + + NRR Sbjct: 197 LPYASEAYYSNWELSSDRANASRRELIMGGMEEQKILRVVGMASSIHLDKENGLAPINRR 256 Query: 334 IDILV 338 I I+V Sbjct: 257 ISIIV 261 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89 +WKI YADFMT +MAFFLVMW+I+ + I +YF P + SK D NP Sbjct: 25 AWKIAYADFMTAMMAFFLVMWLISISSPQELTKIAEYFRTPLSVAINPGSKS-GDATNP 82 >gi|331647484|ref|ZP_08348576.1| chemotaxis protein MotB [Escherichia coli M605] gi|330911699|gb|EGH40209.1| flagellar motor rotation protein MotB [Escherichia coli AA86] gi|331043208|gb|EGI15346.1| chemotaxis protein MotB [Escherichia coli M605] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|301018263|ref|ZP_07182776.1| chemotaxis protein MotB [Escherichia coli MS 69-1] gi|306814281|ref|ZP_07448447.1| flagellar motor protein MotB [Escherichia coli NC101] gi|300399773|gb|EFJ83311.1| chemotaxis protein MotB [Escherichia coli MS 69-1] gi|305852440|gb|EFM52891.1| flagellar motor protein MotB [Escherichia coli NC101] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|32490782|ref|NP_871036.1| flagellar motor protein MotB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165988|dbj|BAC24179.1| motB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 326 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID + PMF P +++ + VL IS+ GHTD P+ N R Sbjct: 145 GLRIEIIDSKKRPMFTTGGKEIAPYMRYIMRILAPVLNELPNRISLAGHTDNQPYINGER 204 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + L++ G+ D+I ++ G A+ + +++ RRI I++ Sbjct: 205 GYSNWELSADRANASRRELIEGGLMNDKILRVIGMANTMSDVNKHHHHASQRRISIIILT 264 Query: 341 RQ 342 +Q Sbjct: 265 KQ 266 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++N I+I+ K + + ++ GSWKI YADFMT +MAFFLVMW+++ + ++ I Y Sbjct: 2 KKNSPMILIRWKKS-QHSGHHGGSWKIAYADFMTAMMAFFLVMWLLSTSTPQQREQIADY 60 Query: 69 F 69 F Sbjct: 61 F 61 >gi|281178957|dbj|BAI55287.1| chemotaxis protein MotB [Escherichia coli SE15] Length = 308 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV + Sbjct: 207 GYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266 Query: 341 RQG 343 +Q Sbjct: 267 KQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|238919361|ref|YP_002932876.1| OmpA family protein [Edwardsiella ictaluri 93-146] gi|238868930|gb|ACR68641.1| OmpA family protein [Edwardsiella ictaluri 93-146] Length = 270 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ T G+ I I+D + PMF S+ P +L+ I +L IS+ GHTD Sbjct: 140 LMINMTDEGLRIQIVDSQKRPMFKNGSAQVEPYMRYILRAIAPILNELPNKISLSGHTDD 199 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ N + NW LS DRA ++ + LM G+ ++I ++ G A + + + N+A N Sbjct: 200 LPYANGEKGYSNWELSADRANASRRELMAGGLDSNKILRVVGMADT-MNLHNMAGNAAEN 258 Query: 332 RRIDILV 338 RRI ILV Sbjct: 259 RRISILV 265 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 I++KKK + ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 9 ILVKKKRSSHAQASHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYF 63 >gi|331683396|ref|ZP_08383997.1| chemotaxis protein MotB [Escherichia coli H299] gi|284921808|emb|CBG34881.1| chemotaxis protein MotB (motility protein B) [Escherichia coli 042] gi|331079611|gb|EGI50808.1| chemotaxis protein MotB [Escherichia coli H299] Length = 308 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|299133623|ref|ZP_07026817.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] gi|298591459|gb|EFI51660.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] Length = 275 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 5/129 (3%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + I+DQ MF + S P T ++++K+ L S ++I G Sbjct: 134 LSKHIMFEETKQGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLAAPLRQSPLRVAIVG 193 Query: 271 HTDA---SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 HT + SP D + LS DRA + Q+L ++G+ I +SG A DP Sbjct: 194 HTSSDFTSP--RPGYDAFDLSADRANAVRQILERAGLPSTHIFSVSGKADSEPLFPDDPS 251 Query: 328 NSANRRIDI 336 +ANRR+ I Sbjct: 252 LAANRRVTI 260 >gi|218699541|ref|YP_002407170.1| flagellar motor protein MotB [Escherichia coli IAI39] gi|218369527|emb|CAR17296.1| protein that enables flagellar motor rotation [Escherichia coli IAI39] Length = 308 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNCISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILV 338 +LV Sbjct: 261 SLLV 264 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|323968311|gb|EGB63718.1| OmpA family protein [Escherichia coli M863] gi|327253019|gb|EGE64673.1| chemotaxis protein motB [Escherichia coli STEC_7v] Length = 308 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + + Sbjct: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV + Sbjct: 207 GYSNWELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266 Query: 341 RQG 343 +Q Sbjct: 267 KQA 269 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + ++ ++K T + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHPIIVVKRRKAKSHGTAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|126730120|ref|ZP_01745932.1| putative chemotaxis MotB protein [Sagittula stellata E-37] gi|126709500|gb|EBA08554.1| putative chemotaxis MotB protein [Sagittula stellata E-37] Length = 279 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 IIIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K I YF P Sbjct: 10 IIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGIADYFTP 66 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 17/151 (11%) Query: 197 KKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 K++ L G +VAD +++ ++ T G++I + + +F ++ P P + Sbjct: 131 KEVEEMLMGRGGESMVADELMEHIVTRVTDEGLVIEFFESEHARLFTGDAT-PTP----L 185 Query: 252 LQKIGEVLAHSTEVI----SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSE 306 L+ + VLA ++EV+ +I GH +SP +ARD +W +S RA + ++L GV E Sbjct: 186 LEDLALVLARASEVVTNQMAIEGHVASSPLV-LARDPSWDVSGLRASAFRELLTGEGVPE 244 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +R+ +++ +A R +PMN+ N RI+++ Sbjct: 245 NRVKRVTSYA-DREPAHKNPMNARNNRIEVV 274 >gi|323977926|gb|EGB73012.1| OmpA family protein [Escherichia coli TW10509] Length = 308 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|268590004|ref|ZP_06124225.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131] gi|291314723|gb|EFE55176.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131] Length = 305 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I I+D N PMF S+ P +L+ I +L ISI GHTD Sbjct: 137 LLIDMINDGLRIQIVDSENRPMFKVGSATVEPYMRDILRAIAPLLNDVPNRISISGHTDD 196 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + N A NW LS DRA ++ + L++ G+ E+++ ++ G A D NRR Sbjct: 197 LAYANGANYSNWELSSDRANASRRELIRGGMDENKVLRVVGMASAIHLDKEDGFAPINRR 256 Query: 334 IDILV 338 I I+V Sbjct: 257 ISIIV 261 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT +MAFFLVMW+I+ + I +YF P + SK D NP Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFRTPLSTAINPGSKS-GDATNP 82 >gi|74311761|ref|YP_310180.1| flagellar motor protein MotB [Shigella sonnei Ss046] gi|73855238|gb|AAZ87945.1| MotB [Shigella sonnei Ss046] Length = 308 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 261 SLLVLNKQA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|296101766|ref|YP_003611912.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056225|gb|ADF60963.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 309 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + NW LS DRA ++ + L+ G+ + ++ ++ G A P ++ NRRI Sbjct: 202 YATGEKGYSNWELSADRANASRRELVAGGLDDGKVLRVVGMAATMRVSDRGPDDAINRRI 261 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 262 SLLVLNQQA 270 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +I+KK+ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSH-PIVIVKKRKHKGHGHGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKG 82 +YF L TA G Sbjct: 61 EYFR---TPLATAVSG 73 >gi|115526365|ref|YP_783276.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520312|gb|ABJ08296.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 270 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 68/127 (53%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + K ++F+ T + + I+D + PMF + S++P T V+++K+ L + ISI Sbjct: 129 EVTKNIIFQETSQSLALEIVDHFSRPMFRQGSAVPYDWTRVLIEKLAVPLKATALRISIV 188 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHT ++ RD + LS+ RA + ++L + G+ ++ ++G + DP + Sbjct: 189 GHTSSTETARGDRDVFELSVLRADAVRRILKQQGLPTSQLFVVAGKGDREPLFSDDPTMA 248 Query: 330 ANRRIDI 336 ANRR+ I Sbjct: 249 ANRRVTI 255 >gi|149376619|ref|ZP_01894379.1| Flagellar motor protein [Marinobacter algicola DG893] gi|149359137|gb|EDM47601.1| Flagellar motor protein [Marinobacter algicola DG893] Length = 260 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 77/297 (25%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 DD +N W I YADF+T+L AFF+VM+ +++ ++ K + + G+ Sbjct: 8 DDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLT-----------GV 56 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 F N P+RS Q +++G +++ Q E+ I N +E Sbjct: 57 F---NAPQRSFQ----------------PIEVGDQSRRSTPQAAEDVI----NPPVTEAP 93 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 +N S+N E R + L+ +A +++ Sbjct: 94 QN-------------------PSMNAE----------------GRTEALRAMADQLALEF 118 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L+ +V ET+ + +S+ RN+ +F + P + V++KI VL + Sbjct: 119 DELINQGVVT---LETSDEWLELSL---RNSLLFGSGDAEPHYDAFDVVEKIAAVLRNRD 172 Query: 264 EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I + G TD P A NW LS R+ + ++L GV +R++ + G+ H+ Sbjct: 173 NAIRVEGFTDNRPINTSAFPSNWELSAARSAAVVRMLSMEGVEAERLAAV-GYGEHQ 228 >gi|170737030|ref|YP_001778290.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819218|gb|ACA93800.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 340 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T G+ + + D +F ++P +L K+G ++ + + GHTD+ P+R Sbjct: 167 VTPMGLRVMLHDTEKRGVFVSGGAVPSEPFRPMLIKLGALMGSIGNPLFVMGHTDSVPYR 226 Query: 279 NI---ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 N +R NW LS+DRA SA +++ GV+ +++ ++ G A R + ++P + NRRI+ Sbjct: 227 NSDSGSRSNWDLSVDRAMSARSWVLQGGVNSEQVMQVIGMA-DRAPLVNNPRAAINRRIE 285 Query: 336 ILV 338 LV Sbjct: 286 FLV 288 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 35/52 (67%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 +I+K+ + D ++ G WK+ +ADF L+ F+++W ++A D++T++ ++ Sbjct: 37 LIVKRPLRRDYDDDHDGGWKVAFADFCLALLCVFMLLWALSARDEETRRKMD 88 >gi|323948225|gb|EGB44213.1| OmpA family protein [Escherichia coli H120] Length = 308 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILVEDRQG 343 +LV +++ Sbjct: 261 SLLVLNKEA 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|294635726|ref|ZP_06714192.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685] gi|291090938|gb|EFE23499.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685] Length = 332 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 18/126 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N R Sbjct: 148 GLRIQIIDSQNRPMFQNGSARVEPYMRDILRAIAPILNELPNKISLSGHTDDLPYANGER 207 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANR 332 NW LS DRA ++ + L+ G++ ++I ++ G A D MN + NR Sbjct: 208 GYSNWELSADRANASRRELVIGGLAGNKILRVVGMA--------DTMNLRHLAGNAAVNR 259 Query: 333 RIDILV 338 RI ILV Sbjct: 260 RISILV 265 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 I++KKK + ++ G+WKI YADFMT +MAFFLVMW++ I +YF Sbjct: 9 ILVKKKRSGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYF 63 >gi|253990166|ref|YP_003041522.1| flagellar motor protein MotB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781616|emb|CAQ84779.1| chemotaxis motb protein [Photorhabdus asymbiotica] Length = 327 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 4/132 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I IID+ N PMF S+ +L+ I +L IS+ GHTD Sbjct: 137 LLIDMMDEGLRIQIIDRENRPMFMIGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDD 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSAN 331 + N R NW LS DRA ++ + L+ G+ E++I ++ G A RLK D + N Sbjct: 197 LKYANGERGYSNWELSADRANASRRELLIGGLDEEKILRVVGMASTVRLK-QEDASSPVN 255 Query: 332 RRIDILVEDRQG 343 RRI ILV ++Q Sbjct: 256 RRISILVLNKQA 267 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +I K+ +D ++ GSWKI YADFMT +MAFFLVMW++ + I +YF Sbjct: 8 VIKVKRRKRNDIKHHGGSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEYF 62 >gi|296534445|ref|ZP_06896882.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957] gi|296265230|gb|EFH11418.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957] Length = 143 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 DKNQ I+++++ D ++ G+WKI YADF+T +MAFFL+MW+INAT D + + Sbjct: 5 DKNQRT--VIVVRREEGGGDGGHHGGAWKIAYADFVTAMMAFFLLMWLINATSDAQRVGL 62 Query: 66 EQYFNP 71 YF P Sbjct: 63 ADYFAP 68 >gi|239781764|pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form I) Length = 210 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 2/128 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N P F S+ P +L+ I VL IS+ GHTD P Sbjct: 55 IDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPNRISLAGHTDDFP 114 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 115 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGXAATXRLSDRGPDDAINRRI 174 Query: 335 DILVEDRQ 342 +LV ++Q Sbjct: 175 SLLVLNKQ 182 >gi|89056663|ref|YP_512114.1| chemotaxis protein MotB [Jannaschia sp. CCS1] gi|88866212|gb|ABD57089.1| chemotaxis protein MotB [Jannaschia sp. CCS1] Length = 277 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 34/41 (82%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 G+WK+ YADF+T +MAFF++MW++NAT ++ +K + YF+P Sbjct: 25 GAWKVAYADFVTAMMAFFMLMWLLNATTENQRKGLADYFSP 65 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G++I + + P+FD + +P P + + ++ +++ H A P Sbjct: 155 TDEGLVIEVFSRPGQPIFDPDTGLPQPWLEELTVSMADLFGTVLNRVAVEAHIAAEPLVR 214 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 W+ + +RA +L G++ RI++++G + R S P+ N RI++++ Sbjct: 215 TTESGWQRTTERAQIIRALLEDGGLNAQRIARVTGHS-DREPFVSPPIAPRNDRIEVIL 272 >gi|251789151|ref|YP_003003872.1| flagellar motor protein MotB [Dickeya zeae Ech1591] gi|247537772|gb|ACT06393.1| OmpA/MotB domain protein [Dickeya zeae Ech1591] Length = 376 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ I IID N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 135 LLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDD 194 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSAN 331 + + R NW LS DRA ++ + L+ G+++ ++ ++ G A LK A ++ N Sbjct: 195 AQYAMGERGYSNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAIN 254 Query: 332 RRIDILVEDRQ 342 RRI ++V ++Q Sbjct: 255 RRISLVVLNKQ 265 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 42/77 (54%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFRTP 63 Query: 73 GKNLMTASKGIFDEQNP 89 K +T+ + D NP Sbjct: 64 LKIAITSGPKMSDASNP 80 >gi|300722595|ref|YP_003711885.1| flagella protein [Xenorhabdus nematophila ATCC 19061] gi|297629102|emb|CBJ89687.1| enables flagellar motor rotation, linking torque machinery to cell wall [Xenorhabdus nematophila ATCC 19061] Length = 333 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I IID+ N PMF S+ +LQ I +L IS+ GHTD+ Sbjct: 137 LLIDMMDEGLRIQIIDRENRPMFMIGSAKVESYMSDILQAIAPILNDIPNKISLSGHTDS 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSAN 331 + N R NW LS DRA ++ + L+ G+ E +I ++ G A ++ DP N Sbjct: 197 LKYANGQRGYSNWELSSDRANASRRELLVGGLDEVKILRVVGMASTVSMQKGIDPNAPVN 256 Query: 332 RRIDILVEDRQG 343 RRI I+V +++ Sbjct: 257 RRISIIVLNKEA 268 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 28/39 (71%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 GSWKI YADFMT +MAFFLVMW+I+ +I +YF Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLISIASPQELTSIAEYF 62 >gi|290474940|ref|YP_003467824.1| flagellar protein [Xenorhabdus bovienii SS-2004] gi|289174257|emb|CBJ81046.1| enables flagellar motor rotation, linking torque machinery to cell wall [Xenorhabdus bovienii SS-2004] Length = 333 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK----GVLFETTRTGILISIIDQRNTPMFDKSSS 242 K K+RL L +++ + + D +K +L + G+ I IID+ N PMF S+ Sbjct: 108 KEKRRLNRLHQQLDQLI---ITDPRLKELRPHLLIDMMDEGLRIQIIDRENRPMFMIGSA 164 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 +LQ I +L +S+ GHTD + N R NW LS DRA ++ + L+ Sbjct: 165 KVESYMRDILQAIAPILNEIPNKVSLSGHTDNLQYANGQRGYSNWELSADRANASRRELL 224 Query: 301 KSGVSEDRISKISGFAHH-RLKIASDPMNSANRRIDILV 338 G+ E +I ++ G A ++ DP NRRI I+V Sbjct: 225 NGGLDEVKILRVVGMASTVSMQKGIDPNAPVNRRISIVV 263 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/39 (56%), Positives = 27/39 (69%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 GSWKI YADFMT +MAFFLVMW+++ +I YF Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLLSIASPQELTSIADYF 62 >gi|257095366|ref|YP_003169007.1| flagellar motor protein MotD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047890|gb|ACV37078.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 276 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 87/157 (55%), Gaps = 12/157 (7%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K++++++++AK+I ++ L+ V+ + ET+R G+ I I D + +F ++ P Sbjct: 93 KQREKMRNVAKEILEVMAPLIEQGKVR--VLETSR-GVTIEIND---SILFSPGQAVLQP 146 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVS 305 + I +Q + EVL + I+I GHTD P +N NW LS RA + ++ +G++ Sbjct: 147 QLIKAMQSVAEVLVAADFPITIEGHTDNVPIKNTQFPSNWELSAVRATTVLRLFADAGIA 206 Query: 306 EDRISKISGFAHHR---LKIASDPMNSANRRIDILVE 339 R++ I G+A R + +D + NRR+ IL++ Sbjct: 207 AGRLTAI-GYADTRPVEPNLLAD-GRARNRRVSILID 241 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 14/98 (14%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ +++ ++ GK + +S + +N P Sbjct: 16 WLVSYADFITLLFAFFVVMYALSSVNE-------------GKYRILSSSMVSAFRNVPVN 62 Query: 93 SS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 SS Q + + +TK S+ K ++KQ +++ N Sbjct: 63 SSGQTPMVVPTPASVTKASLASKAQEAVKQKQREKMRN 100 >gi|311279213|ref|YP_003941444.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1] gi|308748408|gb|ADO48160.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1] Length = 309 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242 KKR+ Q+ KKI L L+ AD +K + + + G+ I IID +N PMF S+ Sbjct: 108 KKRMEQNRLKKIRGELDQLIEADPKLKALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 P +L+ I VL IS+ GHTD + N R NW LS +RA ++ + L+ Sbjct: 168 EVEPYMRDILRAIAPVLNEIPNKISLSGHTDDYQYANGDRGYSNWELSAERANASRRELV 227 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVEDRQ 342 G+ + ++ ++ G A + +K+ + A NRRI +LV + Q Sbjct: 228 AGGLDDGKVLRVVGMA-NTMKLQEHGGDDAINRRISLLVLNNQ 269 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + ++++++ + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSHP-IVVVRRRKHKNHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYF 69 +YF Sbjct: 61 EYF 63 >gi|114777572|ref|ZP_01452553.1| motb protein [Mariprofundus ferrooxydans PV-1] gi|114552043|gb|EAU54560.1| motb protein [Mariprofundus ferrooxydans PV-1] Length = 232 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 35/195 (17%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKI-------LAMKRKKRLQDLAKKISSTLSGLVADNI 211 K+ + S K E +PPL +K+ LAM++ R + + + D+ Sbjct: 56 KAVSVLNSGTKTELQIIPPLQMQKLISPRELMLAMRQNSR---------AIMKNSIMDHK 106 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V+GV+ + + I D +FD+ S++ PE++ L K+ ++LA S I ++GH Sbjct: 107 VRGVILNDR---LYLRIPD---AILFDRGSAVLKPESVKTLVKLAQMLAMSPGNIRVQGH 160 Query: 272 TDASPFRNIARDN------WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIAS 324 T+A NI DN W LSL RA S +L GVS R+S ++G+ + + + Sbjct: 161 TNA----NIDLDNSAFDDPWSLSLARAASVLHILEDEGVSPTRLS-LAGYGPSQPISTEA 215 Query: 325 DPMN-SANRRIDILV 338 P S NRR++I+V Sbjct: 216 TPFGRSKNRRVEIMV 230 >gi|26248156|ref|NP_754196.1| flagellar motor protein MotB [Escherichia coli CFT073] gi|227885682|ref|ZP_04003487.1| flagellar motor protein MotB [Escherichia coli 83972] gi|300994031|ref|ZP_07180650.1| chemotaxis protein MotB [Escherichia coli MS 45-1] gi|301050754|ref|ZP_07197612.1| chemotaxis protein MotB [Escherichia coli MS 185-1] gi|26108560|gb|AAN80763.1|AE016762_16 Chemotaxis motB protein [Escherichia coli CFT073] gi|227837255|gb|EEJ47721.1| flagellar motor protein MotB [Escherichia coli 83972] gi|300297571|gb|EFJ53956.1| chemotaxis protein MotB [Escherichia coli MS 185-1] gi|300406399|gb|EFJ89937.1| chemotaxis protein MotB [Escherichia coli MS 45-1] gi|307553906|gb|ADN46681.1| flagellar motor rotation protein [Escherichia coli ABU 83972] gi|315290318|gb|EFU49694.1| chemotaxis protein MotB [Escherichia coli MS 153-1] Length = 308 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILV 338 +LV Sbjct: 261 SLLV 264 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|188584558|ref|YP_001928003.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179348056|gb|ACB83468.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 277 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+ +R G+ +SI+DQ MF + SS P T +L+++ L + I++ G Sbjct: 135 LSKNVIIAPSRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTLMKLSNRIAVTG 194 Query: 271 HTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 T + R RD W LS +RA S VL +G+ +DR + ++G A +P Sbjct: 195 FTATA--RPGTRDTAPPWELSANRALSVRDVLANAGLPDDRFASVAGKADTEPMFPDNPY 252 Query: 328 NSANRRIDI 336 +ANRR+ + Sbjct: 253 LAANRRVTV 261 >gi|170769416|ref|ZP_02903869.1| chemotaxis protein MotB [Escherichia albertii TW07627] gi|170121740|gb|EDS90671.1| chemotaxis protein MotB [Escherichia albertii TW07627] Length = 308 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N + Sbjct: 147 GLRIQIIDSQNRPMFKIGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYANGEK 206 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS +RA ++ + L G+ + ++ ++ G A P ++ NRRI +LV + Sbjct: 207 GYSNWELSTERANASRRELAAGGLDDGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLN 266 Query: 341 RQG 343 +Q Sbjct: 267 KQA 269 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + ++ ++K + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQTHPIIVVKRRKAKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGNRISNSESP 82 >gi|294492517|gb|ADE91273.1| chemotaxis protein MotB [Escherichia coli IHE3034] Length = 308 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILV 338 +LV Sbjct: 261 SLLV 264 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|118588413|ref|ZP_01545822.1| probable chemotaxis protein [Stappia aggregata IAM 12614] gi|118439119|gb|EAV45751.1| probable chemotaxis protein [Stappia aggregata IAM 12614] Length = 285 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 I ++ E T G+ I ++DQ MF + S P T ++ K+ VL+ I I G Sbjct: 144 ISSNIILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAKMAPVLSQMPNRIEITG 203 Query: 271 HTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HT A + + W LS +RA A Q+L + GV +++ + G A +DP + Sbjct: 204 HTTAGRQSIDPSYTGWELSSERANIARQILSEYGVPDNQFYSVVGKADTEPLFPNDPYLA 263 Query: 330 ANRRIDILV 338 ANRRI IL+ Sbjct: 264 ANRRIGILL 272 >gi|91211113|ref|YP_541099.1| flagellar motor protein MotB [Escherichia coli UTI89] gi|110642005|ref|YP_669735.1| flagellar motor protein MotB [Escherichia coli 536] gi|117624039|ref|YP_852952.1| flagellar motor protein MotB [Escherichia coli APEC O1] gi|191172996|ref|ZP_03034530.1| chemotaxis protein MotB [Escherichia coli F11] gi|215487100|ref|YP_002329531.1| flagellar motor protein MotB [Escherichia coli O127:H6 str. E2348/69] gi|218558752|ref|YP_002391665.1| flagellar motor protein MotB [Escherichia coli S88] gi|218689885|ref|YP_002398097.1| flagellar motor protein MotB [Escherichia coli ED1a] gi|237705847|ref|ZP_04536328.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA] gi|300935867|ref|ZP_07150825.1| chemotaxis protein MotB [Escherichia coli MS 21-1] gi|300982219|ref|ZP_07175931.1| chemotaxis protein MotB [Escherichia coli MS 200-1] gi|312967092|ref|ZP_07781310.1| chemotaxis protein motB [Escherichia coli 2362-75] gi|331657937|ref|ZP_08358899.1| chemotaxis protein MotB [Escherichia coli TA206] gi|91072687|gb|ABE07568.1| chemotaxis MotB protein [Escherichia coli UTI89] gi|110343597|gb|ABG69834.1| chemotaxis MotB protein [Escherichia coli 536] gi|115513163|gb|ABJ01238.1| chemotaxis MotB protein [Escherichia coli APEC O1] gi|190906707|gb|EDV66312.1| chemotaxis protein MotB [Escherichia coli F11] gi|215265172|emb|CAS09560.1| protein that enables flagellar motor rotation [Escherichia coli O127:H6 str. E2348/69] gi|218365521|emb|CAR03248.1| protein that enables flagellar motor rotation [Escherichia coli S88] gi|218427449|emb|CAV17777.1| protein that enables flagellar motor rotation [Escherichia coli ED1a] gi|222033636|emb|CAP76377.1| chemotaxis protein motB [Escherichia coli LF82] gi|226900604|gb|EEH86863.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA] gi|300307289|gb|EFJ61809.1| chemotaxis protein MotB [Escherichia coli MS 200-1] gi|300458979|gb|EFK22472.1| chemotaxis protein MotB [Escherichia coli MS 21-1] gi|307626628|gb|ADN70932.1| flagellar motor protein MotB [Escherichia coli UM146] gi|312288556|gb|EFR16458.1| chemotaxis protein motB [Escherichia coli 2362-75] gi|312946487|gb|ADR27314.1| flagellar motor protein MotB [Escherichia coli O83:H1 str. NRG 857C] gi|315286597|gb|EFU46030.1| chemotaxis protein MotB [Escherichia coli MS 110-3] gi|315296507|gb|EFU55804.1| chemotaxis protein MotB [Escherichia coli MS 16-3] gi|320194396|gb|EFW69027.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327] gi|323186771|gb|EFZ72091.1| chemotaxis protein motB [Escherichia coli RN587/1] gi|323952390|gb|EGB48263.1| OmpA family protein [Escherichia coli H252] gi|323956291|gb|EGB52034.1| OmpA family protein [Escherichia coli H263] gi|324007255|gb|EGB76474.1| chemotaxis protein MotB [Escherichia coli MS 57-2] gi|324013535|gb|EGB82754.1| chemotaxis protein MotB [Escherichia coli MS 60-1] gi|331056185|gb|EGI28194.1| chemotaxis protein MotB [Escherichia coli TA206] Length = 308 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + + NW LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI Sbjct: 201 YASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRI 260 Query: 335 DILV 338 +LV Sbjct: 261 SLLV 264 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 60 EYFRTPLATAVTGGDRISNSESP 82 >gi|119476294|ref|ZP_01616645.1| flagellar motor protein [marine gamma proteobacterium HTCC2143] gi|119450158|gb|EAW31393.1| flagellar motor protein [marine gamma proteobacterium HTCC2143] Length = 344 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 72/314 (22%), Positives = 125/314 (39%), Gaps = 82/314 (26%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP--P 90 W + YADF+T+L AFF+VM+ I+ ++ K + Q + +F Q P P Sbjct: 16 WLVSYADFITLLFAFFVVMYSISQVNEGKYKVLSQTLSE-----------VFARQGPGVP 64 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ER+ +D +IG + +E L ++ +S Sbjct: 65 ERT--------LD--------PFQIGDVVKSNPQSFIE-----LEAENDGDNSGSSANEQ 103 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 SE+G LP + + +KI L GL+ N Sbjct: 104 SERGA-------------------LP-------------AEFEQINQKIDEALGGLLKSN 131 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMF---DKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 V T R ++ +++ +F D + S+P + VL+ I +L T I Sbjct: 132 QV------TVRGSEKWLEVELKSSLLFGSGDSTLSVP---AVGVLESIASILKDQTNPIR 182 Query: 268 IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + G TD P ++ NW LS RA + + ++ G+S DR++ I G+ H+ +D Sbjct: 183 VEGFTDNQPINSVRYPSNWELSAGRASAVVKFFIEEGLSADRLAAI-GYGEHQPVTDNDS 241 Query: 327 MN--SANRRIDILV 338 + NRR+ +++ Sbjct: 242 EEGRAENRRVVLMI 255 >gi|292489120|ref|YP_003532007.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430] gi|292900239|ref|YP_003539608.1| motility protein B [Erwinia amylovora ATCC 49946] gi|291200087|emb|CBJ47213.1| chemotaxis protein (motility protein B) [Erwinia amylovora ATCC 49946] gi|291554554|emb|CBA22155.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora CFBP1430] gi|312173278|emb|CBX81533.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N ++ T G++I I D + PMF S P +LQ + +L +S+ Sbjct: 132 NFKSNLMLTLTDDGLMIQITDSQERPMFKTGSEAPESYMNGILQALVPLLKELPNSLSLT 191 Query: 270 GHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DP 326 GHTD+ + + NW LS RA +A +VL+ +G+ +DRI ++ G R+ +A Sbjct: 192 GHTDSLAYAGGSGGYSNWELSTGRANAARRVLINAGLDDDRILRVIG-TGSRMGLADISA 250 Query: 327 MNSANRRIDILV 338 N NRRI +LV Sbjct: 251 DNPMNRRISVLV 262 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89 G+WKI YADFMT +MAFFLVMW++ ++ D ++ I YF P + +K F E Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPIKPTMGQGNKTSFSESII 82 Query: 90 P 90 P Sbjct: 83 P 83 >gi|225874275|ref|YP_002755734.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] gi|225793995|gb|ACO34085.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] Length = 270 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G+ I +++ + FD SS +L+ + + L I+I G+TDA P+ Sbjct: 116 TPEGLRIELLEAKGGTFFDSGSSKLSAGGKEMLKLLAQQLGGVPNRITIEGYTDAKPYPG 175 Query: 280 I-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA +A +++ SG+ +++++ G+ L++ + P + NRRI I+V Sbjct: 176 KDGYTNWDLSADRANAARRLMQASGLHAGQVAEVRGYGDQNLRLPNKPFDPTNRRITIVV 235 Query: 339 E 339 Sbjct: 236 H 236 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 3/56 (5%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 I+I+KKV+ ++ G+WK+ YADF+T +M+ F+V+W++N T KK I YF Sbjct: 7 IIVIRKKVSHGG--HHGGAWKVAYADFVTAMMSLFIVLWLMN-TSTPIKKIIAGYF 59 >gi|170741247|ref|YP_001769902.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168195521|gb|ACA17468.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 277 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K VL T G+ +S++DQ MF S+ P T VL+++ + + I+I G Sbjct: 135 LSKNVLIHETARGLDVSLVDQDGRSMFPDGSTRPNDRTRQVLERLAPAIRRMSNKIAISG 194 Query: 271 HTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 +T A+ P W LS RA S ++L +GV ++R + +SG A +P + Sbjct: 195 YTAATRPGLRAPAPPWELSAGRAISVREILASNGVPDERFTVVSGKADTEPLFPDNPYIA 254 Query: 330 ANRRIDI 336 ANRR+ I Sbjct: 255 ANRRVTI 261 >gi|307944455|ref|ZP_07659795.1| OmpA/MotB [Roseibium sp. TrichSKD4] gi|307772204|gb|EFO31425.1| OmpA/MotB [Roseibium sp. TrichSKD4] Length = 284 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 I ++ E + G+ I ++DQ MF + S P T +L K+ VL+ + I G Sbjct: 143 ISSNIILEESEEGLNIMLVDQDGRSMFREGSKYPYETTRRLLAKMAPVLSQMPNRVEITG 202 Query: 271 HTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT A R++ A W LS +RA A Q+L + GV ++ + G + +DP Sbjct: 203 HTTAG-GRSVDPAYTGWDLSAERANVARQILAEYGVPSNQFYAVIGKSDSEPLFPNDPYL 261 Query: 329 SANRRIDILV 338 ++NRR++IL+ Sbjct: 262 ASNRRVEILL 271 >gi|330861237|emb|CBX71488.1| hypothetical protein YEW_CQ10830 [Yersinia enterocolitica W22703] Length = 89 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 47/81 (58%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +++ + D +P Sbjct: 63 FRTPLKVALSSGEKSSDSTSP 83 >gi|157376457|ref|YP_001475057.1| flagellar motor protein MotB [Shewanella sediminis HAW-EB3] gi|157318831|gb|ABV37929.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3] Length = 325 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 144/338 (42%), Gaps = 42/338 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73 + KK D P W +AD M++LM FF+++ + D K I FG Sbjct: 1 MAKKEKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 74 -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK--QY 124 K++ + I E P PE + I+ +E +T+ ++ + G + Q Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNE-MTEPVLEYQAGDDDSSGGVQQ 119 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 QR E S + Q E + K KS K+ ++EE SK + Sbjct: 120 QRGEQRGGEASATAQEEA----------ESKSESKSEAEAKAKSEEE-------SKAQAA 162 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A + ++ D KK++ L+ + D ++ E+ I+I I R F S Sbjct: 163 A---QDQINDEVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFL 213 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSG 303 P V++++GE+L ++++ GHTD N + NW LS RA + L++ Sbjct: 214 QPRFKPVIRRVGELLKDVPGIVTVSGHTDDMRISNELYSSNWDLSSKRAVAVAHELIRVK 273 Query: 304 VSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVE 339 + R K+ G A+ +A+D P N A NRR++I +E Sbjct: 274 GFDQRRMKVVGMANSDPLVANDSPGNRARNRRVEIAIE 311 >gi|293395565|ref|ZP_06639848.1| chemotaxis MotB protein [Serratia odorifera DSM 4582] gi|291421884|gb|EFE95130.1| chemotaxis MotB protein [Serratia odorifera DSM 4582] Length = 330 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ +L+ I +L IS+ GHTD P+ R Sbjct: 144 GLRIQIIDSQNRPMFTTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDLPYATGER 203 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + L+ G+SE ++ ++ G A ++ NRRI ILV + Sbjct: 204 YYSNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITILVLN 263 Query: 341 RQ 342 +Q Sbjct: 264 KQ 265 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++N I+++K+ A ++ GSWKI YADFMT +MAFFLVMW++ I +Y Sbjct: 2 KQNHPVILVRKRKA-HQVAHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEY 60 Query: 69 F-NPFGKNLMTASK 81 F P L T +K Sbjct: 61 FRTPLKVALTTGNK 74 >gi|220924426|ref|YP_002499728.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219949033|gb|ACL59425.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 277 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K VL T G+ +S++DQ N MF S+ P T VL+++ + + I++ G Sbjct: 135 LSKNVLIHETERGLDVSLVDQDNRSMFPDGSTRPNDRTRQVLERLAPTIRSLSNRIAVAG 194 Query: 271 HTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 +T A+ W LS RA S ++L +G+ +DR + +SG A +P + Sbjct: 195 YTAATRPGRRPPAPPWELSTGRAISVREILAGAGIPDDRFAVVSGKADTEPLFPDNPYIA 254 Query: 330 ANRRIDI 336 ANRR+ I Sbjct: 255 ANRRVTI 261 >gi|212709470|ref|ZP_03317598.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM 30120] gi|212687808|gb|EEB47336.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM 30120] Length = 312 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I I+D N PMF S+ P +L+ I +L ISI GHTD Sbjct: 137 LLIDMINDGLRIQIVDSANRPMFKVGSATVEPYMRDILRAIAPLLNDVPNRISISGHTDD 196 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 P+ + A NW LS DRA ++ + L+ G+ E ++ ++ G A + + NRR Sbjct: 197 LPYASEAYYSNWELSSDRANASRRELIMGGMDERKVLRVVGMASSIHLDKENGLAPVNRR 256 Query: 334 IDILV 338 I I+V Sbjct: 257 ISIIV 261 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 Q I +KKK + G+WKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 7 QIIRVKKKGGHQQHAHG-GAWKIAYADFMTAMMAFFLVMWLISISSPQELTKIAEYF 62 >gi|168234012|ref|ZP_02659070.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205331986|gb|EDZ18750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 309 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ HTD P Sbjct: 142 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLARHTDDFP 201 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N + NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI Sbjct: 202 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRI 261 Query: 335 DILVEDRQG 343 +LV ++Q Sbjct: 262 SLLVLNKQA 270 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83 >gi|126734128|ref|ZP_01749875.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2] gi|126716994|gb|EBA13858.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2] Length = 278 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 40/56 (71%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 IIK+K I ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + YF P Sbjct: 10 IIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADYFAP 65 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 197 KKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + I + L G +++D ++ ++ T G++I I D +F +++P P T + Sbjct: 128 RDIEAVLMGQGGESMLSDQALRHIITRLTDEGLVIEIYDLPEVTLFVDDTTVPNPVTAEI 187 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + + ++++GH A I W LS RA +L G+ RI + Sbjct: 188 ATIMARMFTTVSNDVAVKGHLSAKSPLQIDNPVWELSTGRAVQMRLMLQSGGLDPMRIVR 247 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 SG A R D N RI++++ Sbjct: 248 QSG-AGDREPAVRDATAPRNNRIEVIL 273 >gi|85715414|ref|ZP_01046396.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85697835|gb|EAQ35710.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 276 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + I+DQ MF + S P T +++ K+ L + ISI G Sbjct: 135 LSKHIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIGKLAAPLTATPFRISITG 194 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT ++ P R+ D + LS DRA Q+L + G+ I +SG + DP Sbjct: 195 HTASNFVPMRS-DYDGFDLSADRANVVRQILEQEGLPPSHIFAVSGKSDSMPLFPDDPSL 253 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 254 AANRRVTI 261 >gi|23013133|ref|ZP_00053071.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 344 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 10 ENDQFIIIK--KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 E Q IIIK KKVA + G+WK+ YADF+T +MAFFL++W++NA ++ + Sbjct: 3 EGGQQIIIKRVKKVAGG---AHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSN 59 Query: 68 YFNP 71 YF P Sbjct: 60 YFAP 63 >gi|157371226|ref|YP_001479215.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568] gi|157322990|gb|ABV42087.1| OmpA/MotB domain protein [Serratia proteamaculans 568] Length = 321 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L G+ I IID +N PMF S+ +L+ I +L IS+ GHTD Sbjct: 136 LLINMMDEGLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDD 195 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ R NW LS DRA ++ + L+ G+SE ++ ++ G A ++ NR Sbjct: 196 IPYATGERGYSNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINR 255 Query: 333 RIDILVEDRQ 342 RI +LV ++Q Sbjct: 256 RITVLVLNKQ 265 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++N ++++K+ + ++ GSWKI YADFMT +MAFFLVMW++ I +Y Sbjct: 2 KQNHPVVLVRKRKS-HQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEY 60 Query: 69 F 69 F Sbjct: 61 F 61 >gi|163854227|ref|YP_001642270.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens PA1] gi|218533172|ref|YP_002423988.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|240141687|ref|YP_002966167.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1] gi|163665832|gb|ABY33199.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1] gi|218525475|gb|ACK86060.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|240011664|gb|ACS42890.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1] Length = 277 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+ R G+ +SI+DQ MF + SS P T +L+++ L I++ G Sbjct: 135 LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTLMKLPNRIAVTG 194 Query: 271 HTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 T + R RD W LS +RA S VL +G+ +DR + ++G A +P Sbjct: 195 FTATT--RPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADTEPMFPDNPY 252 Query: 328 NSANRRIDI 336 +ANRR+ + Sbjct: 253 LAANRRVTV 261 >gi|188533603|ref|YP_001907400.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99] gi|188028645|emb|CAO96507.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99] Length = 343 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 45/81 (55%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + ND+ I++ K+ + + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNDRPIVLVKRKKANKHSGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +T + D +P Sbjct: 62 FKTPLKVAITGGQRSSDSSSP 82 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ G+ I IID +N PMF S+ +L+ I +L IS+ GHTD Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRISMAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ R NW LS DRA ++ + L+ G+S ++ ++ G + +K+ + N A N Sbjct: 199 FPYAGGERGYSNWELSADRANASRRELVAGGLSSGKMLRVVGMSDT-MKLKNRGANDAVN 257 Query: 332 RRIDILV 338 RRI +LV Sbjct: 258 RRISLLV 264 >gi|238796916|ref|ZP_04640420.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969] gi|238719176|gb|EEQ10988.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969] Length = 320 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 18/129 (13%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G+LI IID + PMF S P ++LQ + VL I++ GHTD+ P+ N Sbjct: 110 TDDGLLIQIIDSQERPMFKVGSRELEPYMRIILQALVPVLNDLPNKINLTGHTDSLPYVN 169 Query: 280 --IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------- 330 NW LS DRA ++ + L+ G+++++ ++ G A D MN A Sbjct: 170 GEAGYSNWELSSDRANASRRTLVSGGLADNKFLRVIGSA--------DMMNLANVKSDAP 221 Query: 331 -NRRIDILV 338 NRRI ILV Sbjct: 222 INRRISILV 230 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 21/29 (72%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYF 69 MT +MAFFLVMW+++++ ++ I YF Sbjct: 1 MTAMMAFFLVMWLLSSSTPLQREQIADYF 29 >gi|270262419|ref|ZP_06190690.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13] gi|270043103|gb|EFA16196.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13] Length = 321 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ +L+ I +L IS+ GHTD P+ R Sbjct: 144 GLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDIPYATGER 203 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS DRA ++ + L+ G+SE ++ ++ G A ++ NRRI +LV + Sbjct: 204 GYSNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITVLVLN 263 Query: 341 RQ 342 +Q Sbjct: 264 KQ 265 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++N ++++K+ + ++ GSWKI YADFMT +MAFFLVMW++ I +Y Sbjct: 2 KQNHPVVLVRKRKS-HQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEY 60 Query: 69 F-NPFGKNLMTASK 81 F P L T K Sbjct: 61 FRTPLKVALTTGDK 74 >gi|116328262|ref|YP_797982.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121006|gb|ABJ79049.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 340 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 +S+ K L+ +KK L LA + ++ L + D I KG + L+ ID R + F Sbjct: 176 ISRLKNLSENQKKELDRLADQ-ANELENKLGDEIKKGQIRLKRFHNRLVINIDDRIS--F 232 Query: 238 DKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 D S+ + + L KI E+L + +I I GHTD P R DNW+LS +RA S Sbjct: 233 DSGSAELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSV 292 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 ++S + + R ++G+ + +++D P N A NRR+DI+V Sbjct: 293 LHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVV 337 >gi|307546933|ref|YP_003899412.1| flagellar motor protein MotB [Halomonas elongata DSM 2581] gi|307218957|emb|CBV44227.1| flagellar motor protein MotB [Halomonas elongata DSM 2581] Length = 317 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242 ++++ +DL ++I + AD +K + F+ T G+ I ++D PMF+ S Sbjct: 111 RQRRAFRDLQRRIEMAID---ADPDLKQLRDQLRFDMTPEGLRIQLVDTEQRPMFELGSD 167 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLM 300 P +L+ + +L +SI GHTD+ + N NW LS RA ++ + L+ Sbjct: 168 RVAPYMRDLLRLMAPLLNELPNDLSISGHTDSLAYLNGFQGYGNWELSSARANASRRELV 227 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 G+ ++ +++GFA + ++P + NRRI++LV Sbjct: 228 AGGLDSAKLLRVAGFADQVVMPDTEPSDPVNRRIELLV 265 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 28/40 (70%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 GSWKI ADFMT LMA FLVMWI++ ++ + +YF+ Sbjct: 24 GSWKIALADFMTALMALFLVMWILSTASRQEREGVAEYFS 63 >gi|116330986|ref|YP_800704.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124675|gb|ABJ75946.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 340 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 +S+ K L+ +KK L LA + ++ L + D I KG + L+ ID R + F Sbjct: 176 ISRLKNLSENQKKELDRLADQ-ANELENKLGDEIKKGQIRLKRFHNRLVINIDDRIS--F 232 Query: 238 DKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 D S+ + + L KI E+L + +I I GHTD P R DNW+LS +RA S Sbjct: 233 DSGSAELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSV 292 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 ++S + + R ++G+ + +++D P N A NRR+DI+V Sbjct: 293 LHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVV 337 >gi|254487666|ref|ZP_05100871.1| chemotaxis protein MotB [Roseobacter sp. GAI101] gi|214044535|gb|EEB85173.1| chemotaxis protein MotB [Roseobacter sp. GAI101] Length = 280 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 42/61 (68%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N +IIK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + YF Sbjct: 8 NAAPVIIKRKKVVKGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADYFT 67 Query: 71 P 71 P Sbjct: 68 P 68 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%) Query: 194 DLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +L K + + L G +V DNI + V+ T G++I + D + P+F P Sbjct: 130 ELFKVVDAQLMGRGGESMVMDNIARHVITRQTEEGMVIELFDVEDVPLFKNGGDQPTQ-- 187 Query: 249 IVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L+++ EV+ ++++ I++ H ++P + W LS R +L K GV Sbjct: 188 --MLRELLEVIVDASKIVTNKIAVAAHVRSNPIVAVENPVWDLSAKRGTQTRILLEKLGV 245 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 RI +++GFA R A D M+ N R++I++ Sbjct: 246 KPARIERVTGFA-DRKPAAIDTMDVRNNRVEIIL 278 >gi|92117049|ref|YP_576778.1| OmpA/MotB [Nitrobacter hamburgensis X14] gi|91799943|gb|ABE62318.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 276 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 3/128 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + I+DQ MF S P T ++++K+ L + ISI G Sbjct: 135 LSKHIMFEETKEGLNLEIVDQDGRSMFADGSREPYERTRMLIRKLAAPLKATPLRISITG 194 Query: 271 HTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT ++ P R+ D + LS DRA + Q+L + G+ I ++G + DP Sbjct: 195 HTASNFIPTRS-DYDGFDLSADRANAVRQILEREGLPPSHIFAVAGKSDSMPLFPDDPSL 253 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 254 AANRRVTI 261 >gi|37525779|ref|NP_929123.1| flagellar motor protein MotB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785208|emb|CAE14143.1| chemotaxis protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 333 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + G+ I IID+ N PMF S+ +L+ I +L IS+ GHTD Sbjct: 137 LLIDMMDEGLRIQIIDRENRPMFMVGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDD 196 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDPMNSAN 331 + N R NW LS DRA ++ + L+ G+ E +I ++ G A RLK D N Sbjct: 197 LKYANGERGYSNWELSADRANASRRELLIGGLDEVKILRVVGMASTVRLK-QEDASAPVN 255 Query: 332 RRIDILVEDRQG 343 RRI ILV ++Q Sbjct: 256 RRISILVLNKQA 267 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 22/39 (56%), Positives = 27/39 (69%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 GSWKI YADFMT +MAFFLVMW++ + I +YF Sbjct: 24 GSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEYF 62 >gi|4928701|gb|AAD33691.1|AF136403_3 RpmB [Pseudomonas aeruginosa] Length = 146 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 2/65 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 -NPFG 73 +P G Sbjct: 61 QDPIG 65 >gi|254564195|ref|YP_003071290.1| chemotaxis protein MotB [Methylobacterium extorquens DM4] gi|254271473|emb|CAX27488.1| putative chemotaxis protein MotB [Methylobacterium extorquens DM4] Length = 277 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K V+ R G+ +SI+DQ MF + SS P T +L+++ L I++ G Sbjct: 135 LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLTPTLMKLPNRIAVTG 194 Query: 271 HTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 T + R RD W LS +RA S VL +G+ +DR + ++G A +P Sbjct: 195 FTATT--RPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADTEPMFPDNPY 252 Query: 328 NSANRRIDI 336 +ANRR+ + Sbjct: 253 LAANRRVTV 261 >gi|327478801|gb|AEA82111.1| OmpA/MotB domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 311 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIA 281 G+ I I D + MF + S++ P +L + VL+ + I GHTDA+P+R Sbjct: 158 GLRILIKDDQQRFMFQRGSAVLNPHFAKLLAVLAGVLSKVENKLIISGHTDATPYRLQSG 217 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DNW LS DRA A VL+ +G+ + +++ A P + ANRR++IL+ Sbjct: 218 YDNWNLSGDRALRARNVLVDAGLPGRSVLQVTAQADVMPLRPEAPEDGANRRVEILL 274 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 DK + ++ +I++++ + G+WK+ +ADF +MA F+V+WII + T A Sbjct: 5 DKGKAGEREVIVRRRTKKGHGDEHGGAWKVAFADFTLAMMALFMVLWIIQPQMNLTNPAF 64 Query: 66 -EQYFNPFGKNLMTASKGIFD 85 EQ NP L+ GIFD Sbjct: 65 GEQESNP----LVDGGAGIFD 81 >gi|75675430|ref|YP_317851.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74420300|gb|ABA04499.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 276 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K ++FE T+ G+ + I+DQ MF + S P T ++++++ L + IS+ G Sbjct: 135 LSKHIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIRRLAAPLKATPFRISVTG 194 Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HT AS F + D + LS DRA Q+L + GV I +SG + DP Sbjct: 195 HT-ASNFIAMRSDYDGFDLSADRANVVRQILEREGVPAGHIFAVSGKSDSMPLFPDDPSL 253 Query: 329 SANRRIDI 336 +ANRR+ I Sbjct: 254 AANRRVTI 261 >gi|254477135|ref|ZP_05090521.1| OmpA/MotB [Ruegeria sp. R11] gi|214031378|gb|EEB72213.1| OmpA/MotB [Ruegeria sp. R11] Length = 278 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------FGKNLMTASKGI 83 +WK+ YADF+T +MAFF++MW++NAT + +K + YF+P G N + Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFNGDSM 86 Query: 84 FDEQNPPERSS 94 F EQ P+ + Sbjct: 87 FTEQIKPQNGT 97 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +V+ + + ++ T G++I + D +P+F + + PE ++ + I E++A T V Sbjct: 144 MVSLEMAQHIITRVTDEGLVIELFDTETSPLFKEGT----PEPTLLFRDIIEMVARVTGV 199 Query: 266 ----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I++ GHT + P W LS RA +L G RI +++G A +L Sbjct: 200 VENNIAVGGHTRSHPVVIANNPVWELSHARADMTRVMLESGGTKSKRIHRVTGHADRKLT 259 Query: 322 IASDPMNSANRRIDILV 338 A +PM + N RI+I++ Sbjct: 260 DA-NPMAARNNRIEIVL 275 >gi|294828058|ref|NP_712396.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai str. 56601] gi|304570492|ref|YP_001665.2| motility protein B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385905|gb|AAN49414.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai str. 56601] Length = 336 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 29/243 (11%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGKDLCK------STDL 163 LK S+N++K+ N +QS+ ++ L D E+ ++ C+ + Sbjct: 103 LKTKSSNKEKE--------LIDENEKQSKKFRDLIDGLKEDLERERENCQKKTEALQKEY 154 Query: 164 EKSINKEENYFL---PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFET 219 E+ I+ E+ L +SK K L+ +KK L L+ + ++ L + D I KG + + Sbjct: 155 ERKISDLESRILVLNDEISKLKHLSENQKKELDRLSDQ-ANELENKLTDEIKKGQIRLKR 213 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278 ++I+I D+ + FD S+ + + L KI E+L + +I I GHTD P R Sbjct: 214 FHDRLVINIDDKIS---FDSGSADLKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIR 270 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRID 335 DNW+LS +RA S ++S + + R ++G+ + +++D P N A NRR+D Sbjct: 271 TKKFSDNWQLSGERALSVLHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVD 330 Query: 336 ILV 338 I+V Sbjct: 331 IVV 333 >gi|163742566|ref|ZP_02149952.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10] gi|161384151|gb|EDQ08534.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10] Length = 278 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 32/40 (80%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +WK+ YADF+T +MAFF++MW++NAT + +K + YF+P Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSP 66 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 69/137 (50%), Gaps = 9/137 (6%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +V+ + + ++ T G+++ + D +P+F + ++ P ++ + I ++++ T V Sbjct: 144 MVSIEMAQHIITRVTDEGLVVELFDTEESPLFKEGTAEP----TLLFRDIVKMVSRVTGV 199 Query: 266 ----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I+I GH + W LS RA + +L G R+ +++G A +L Sbjct: 200 VENNIAIGGHIRSHAVVVANNPVWELSHARADATRVMLESGGTKSKRMHRVTGHADRKL- 258 Query: 322 IASDPMNSANRRIDILV 338 S+PM++ N R++I++ Sbjct: 259 TDSNPMSARNNRVEIIL 275 >gi|297618036|ref|YP_003703195.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145873|gb|ADI02630.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 258 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 14/137 (10%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 +A NIV L E R G++IS+ ++T +F K S + P +++K+GE L + Sbjct: 116 LAGNIV---LMEQER-GLVISL---KDTLLFPKGSDVLTPRAHEIIRKVGESLKTIPNYV 168 Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA 323 + GHTD P N + NW LS+ RA + VL + G+ DR+S +G+ +R + Sbjct: 169 RVEGHTDDLPI-NTPKFPSNWELSVLRATNVVHVLAGEVGIPPDRLSA-TGYGEYRPLMP 226 Query: 324 SD--PMNSANRRIDILV 338 +D P + NRR+DI++ Sbjct: 227 NDSEPNRAMNRRVDIVI 243 >gi|45600818|gb|AAS70302.1| motility protein B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 266 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 29/243 (11%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGKDLCK------STDL 163 LK S+N++K+ N +QS+ ++ L D E+ ++ C+ + Sbjct: 33 LKTKSSNKEKE--------LIDENEKQSKKFRDLIDGLKEDLERERENCQKKTEALQKEY 84 Query: 164 EKSINKEENYFL---PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFET 219 E+ I+ E+ L +SK K L+ +KK L L+ + ++ L + D I KG + + Sbjct: 85 ERKISDLESRILVLNDEISKLKHLSENQKKELDRLSDQ-ANELENKLTDEIKKGQIRLKR 143 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278 ++I+I D+ + FD S+ + + L KI E+L + +I I GHTD P R Sbjct: 144 FHDRLVINIDDKIS---FDSGSADLKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIR 200 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRID 335 DNW+LS +RA S ++S + + R ++G+ + +++D P N A NRR+D Sbjct: 201 TKKFSDNWQLSGERALSVLHYFLESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVD 260 Query: 336 ILV 338 I+V Sbjct: 261 IVV 263 >gi|120554886|ref|YP_959237.1| flagellar motor protein MotD [Marinobacter aquaeolei VT8] gi|120324735|gb|ABM19050.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 260 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/304 (21%), Positives = 123/304 (40%), Gaps = 77/304 (25%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ D +N W I YADF+T+L AFF+VM+ +++ ++ K + + F Sbjct: 1 MRRRRPPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETFT------ 54 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G+F N P+RS Q + +G + Sbjct: 55 -----GVF---NAPQRSLQ----------------PVTVGGQPVR--------------- 75 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + Q +H +D+ E N E + A R + L+ +A Sbjct: 76 APQQQH------------EDVIPPPVTEAPRNPE------------LDAEGRTEALRTMA 111 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++ L+ +V ET+ I +++ N+ +F + P ++ V++KI Sbjct: 112 NQLAMEFDELINQGVVS---LETSSEWIELNL---PNSMLFGSGDAEPHYDSFEVIEKIA 165 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G TD P R NW LS RA + ++LM G+ +R++ + G+ Sbjct: 166 SVLRNRDNAVKVEGFTDNQPIRTSRFPSNWELSTARAAAVARMLMMEGIEPERLAAV-GY 224 Query: 316 AHHR 319 ++ Sbjct: 225 GQYQ 228 >gi|167725893|ref|ZP_02409129.1| chemotaxis LafU protein [Burkholderia pseudomallei DM98] gi|167905052|ref|ZP_02492257.1| chemotaxis LafU protein [Burkholderia pseudomallei NCTC 13177] Length = 271 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--I 280 G+ I+I D MF++ S P I +L + VL T + I GHTDA+ + + + Sbjct: 105 GVRITIHDSDKQGMFERRSDALNPPFIRLLTALVPVLGTVTNKMVIVGHTDATQYADASV 164 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +NW LS RA A QVL G+ R+ +ISG + +P + NRR+++L+ Sbjct: 165 FSNNWNLSSRRALRARQVLADGGMDAQRMFQISGMGDSVPAVPDNPNHDMNRRVELLL 222 >gi|296188354|ref|ZP_06856746.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7] gi|296047480|gb|EFG86922.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7] Length = 277 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 10/151 (6%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +++DL KK+ S L + + V E G+++S+ R+T F+ + + + Sbjct: 88 KMEDLKKKVDSYLQ---KNGMQNSVTTEVDERGLVVSL---RDTLFFETGKAEVIAASQG 141 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L +IG++L + I GHTD P N DNW+LS RA + ++L+ +GV ++ Sbjct: 142 KLVEIGKILNQLDNTMRIEGHTDNVPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKL 201 Query: 310 SKISGFAHHR--LKIASDPMNSANRRIDILV 338 S ++ + +R L +++ + NRR+DI+V Sbjct: 202 SSVA-YGEYRPVLDNSTEDGRARNRRVDIIV 231 >gi|90577360|ref|ZP_01233171.1| chemotaxis LafU protein [Vibrio angustum S14] gi|90440446|gb|EAS65626.1| chemotaxis LafU protein [Vibrio angustum S14] Length = 332 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ I + D MF + S+ P VL I + + + I GHTDA+PF Sbjct: 152 DVTPQGLRIILQDDFKQNMFHRGSANLTPFFEDVLLSIAPIFKQISNSLIISGHTDATPF 211 Query: 278 RN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + R NW LS RA A Q L+ G+ +R+ +++ A L P S NRRI+ Sbjct: 212 KRQFSNRSNWELSSSRANVARQTLIAGGMPSNRVLQVAAMAERALLNKQSPNASENRRIE 271 Query: 336 ILV 338 + + Sbjct: 272 LFI 274 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N + I+ K+ + G+WK+ +ADFM LMA FLV+W++ D +KAI Y Sbjct: 2 QNTEQIVFKRAAKRHSHQQHGGAWKVAFADFMIALMALFLVLWLMQVVDQKERKAIVAYV 61 Query: 70 NPFGKNLMTASKGIFDE 86 N S +FDE Sbjct: 62 N---------SASVFDE 69 >gi|254501723|ref|ZP_05113874.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222437794|gb|EEE44473.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 284 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 1/125 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ E T G+ I ++DQ MF + S P T ++ ++ VL+ I I GHT A Sbjct: 147 IILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAQMAPVLSRMPNRIEITGHTTA 206 Query: 275 SPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + W LS +RA A Q+L + GV + + + G + +DP +ANRR Sbjct: 207 GAATVDPSYTGWDLSTERANVARQILSEYGVPDGQFYSVVGKSDTEPLFPNDPYLAANRR 266 Query: 334 IDILV 338 + IL+ Sbjct: 267 VGILL 271 >gi|300853354|ref|YP_003778338.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] gi|300433469|gb|ADK13236.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] Length = 283 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 11/153 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ L K++ S L+ A+ + + V + G+++S+ NT FD + PE Sbjct: 98 KLKQLKKQVDSYLA---ANGLSQSVSSQIDERGLVVSL---SNTLFFDTGKAEIKPEIQN 151 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDR 308 L IG+++ I + GHTD P N NW+LS RA + Q L K G+ ++ Sbjct: 152 TLMGIGKMINQMGNSIRVEGHTDNVPISNNEYASNWQLSCARAANVTQFLQNKVGIKPEK 211 Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339 ++ + G+ +R ++D + NRR+DI++E Sbjct: 212 LTSV-GYGEYRSVTDNSTDANRAKNRRVDIIIE 243 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 20/26 (76%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD 58 W + YADFMT+LM FF+VM+ ++ D Sbjct: 17 WMLSYADFMTLLMIFFVVMYAMSQVD 42 >gi|259907647|ref|YP_002648003.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96] gi|224963269|emb|CAX54753.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96] gi|283477490|emb|CAY73406.1| Chemotaxis protein motB (Motility protein B) [Erwinia pyrifoliae DSM 12163] Length = 302 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89 G+WKI YADFMT +MAFFLVMW++ ++ D ++ I YF P + +K F E Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPIKPTMGQGNKTSFSESVI 82 Query: 90 P 90 P Sbjct: 83 P 83 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIAR 282 +I I D + PMF S P +LQ + +L +S+ GHTD+ + + Sbjct: 147 MIQITDSQERPMFKTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGY 206 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDILV 338 NW LS RA +A +VL+ +G+ +D I ++ G R+ + A +PM NRRI ILV Sbjct: 207 SNWELSTGRANAARRVLVNAGLGDDHILRVIG-TGSRMGLTDISADNPM---NRRISILV 262 >gi|310764847|gb|ADP09797.1| chemotaxis protein (motility protein B) [Erwinia sp. Ejp617] Length = 302 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNP 89 G+WKI YADFMT +MAFFLVMW++ ++ D ++ I YF P + +K F E Sbjct: 23 GTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPIKPTMGQGNKTSFSESVI 82 Query: 90 P 90 P Sbjct: 83 P 83 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIAR 282 +I I D + PMF S P +LQ + +L +S+ GHTD+ + + Sbjct: 147 VIQITDSQERPMFKTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGY 206 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDILV 338 NW LS RA +A +VL+ +G+ +D I ++ G R+ + A +PM NRRI +L+ Sbjct: 207 SNWELSTGRANAARRVLVNAGLDDDHILRVIG-TGSRMGLTDISADNPM---NRRISVLI 262 >gi|239906204|ref|YP_002952943.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239796068|dbj|BAH75057.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 250 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/38 (63%), Positives = 29/38 (76%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 SWK+ YADF+T +MAFFL+MWIIN T K +EQYF Sbjct: 25 SWKVAYADFVTAMMAFFLLMWIINMVPPATLKQLEQYF 62 >gi|254787123|ref|YP_003074552.1| flagellar motor protein MotB [Teredinibacter turnerae T7901] gi|237687385|gb|ACR14649.1| putative chemotaxis protein MotB [Teredinibacter turnerae T7901] Length = 329 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 53/325 (16%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + P L +W +AD M++LM FF+++ + D K + M + G+ Sbjct: 10 ECPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDAMKFKRL--------AGSMAQAFGV- 60 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 QNK++++ I K + + + + + L N+ Y + +E Sbjct: 61 ----------QNKLNVT---DIPKGTSIIAQEFSPARPEPTPL--NVIYQNTQDITEM-- 103 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI---SS 201 SL +D + D+E+ EE + + ++ K++L+DL +K + Sbjct: 104 -SLE------QDCAQEYDIEQG---EEGV-------DGGIKVRVKQKLEDLLQKTEQDAY 146 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ + + I G + TR ++I I ++ + F S+ PE V+ ++ VL Sbjct: 147 ELAEALNEQIEAGQVEVETRGRLIIIRIREKGS--FVSGSAELAPEYRDVMGEVRSVLTL 204 Query: 262 STEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I ++GH+D P R R NW LS RA S Q LM G ++SGFA R Sbjct: 205 KPGRIEVQGHSDNIPVRRGRYRSNWELSAARAVSVAQELMSGGALPPNRFEVSGFADTRP 264 Query: 321 KIA-SDPMNSA-NRRIDILVEDRQG 343 +A + P N A NRR++IL+ +QG Sbjct: 265 LVANTTPENRARNRRVEILI--KQG 287 >gi|119947181|ref|YP_944861.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37] gi|119865785|gb|ABM05262.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37] Length = 306 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 10/154 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KRL DL ++I ++ +L E G+ I + + M+++ + P Sbjct: 121 KRLDDLVEEIDAS----------NNILIEVIPDGLRILLTASEDQKMYERGGTQLTPFYE 170 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + V + I GHTD++P+ NW LS RA SA +++ G+ + I Sbjct: 171 DMLLEFSSVFNAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANI 230 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ G A+ + + ++S NRR+++++ RQ Sbjct: 231 TQVIGMANTKPIDKQNELSSINRRVEVIILTRQA 264 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +WK+ +AD M LM FLV+W + D K+ I YF Sbjct: 25 AWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYF 62 >gi|224825768|ref|ZP_03698872.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224601992|gb|EEG08171.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 325 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 192 LQDLAKKIS--STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ LAK +S S +GL A NI + T G+ + + D MF++ S++ Sbjct: 136 LQKLAKMMSDLSVEAGL-AGNIQTVI----TPYGLRVMLHDTDKQGMFERGSAVINERFK 190 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVSE 306 +LQK+G++ AH + + GHTD+ ++ A NW LS +RA +A L+ G++ Sbjct: 191 HLLQKMGQMFAHIDNQLLLVGHTDSLQYKGQDYAAFSNWSLSSNRAMAARMQLLLGGMAS 250 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + I ++ G A A P + NRRI++LV Sbjct: 251 NGILQVVGMADRAPLDARHPDAALNRRIELLV 282 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 DK +E +I K DD ++ G+WK+ +ADF+ LM FLVMW++ + + +T + Sbjct: 4 DKKKEGTAAVIKKVSRRQDDGGHS-GAWKVAFADFVLALMCLFLVMWLLASREQETMAQL 62 Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERS 93 + N G L ++ + Q P S Sbjct: 63 LR--NGGGSPLAEGTQSRIEHQGTPHGS 88 >gi|224825740|ref|ZP_03698844.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224601964|gb|EEG08143.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 271 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 12/157 (7%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +K + RL LA + + LV VK + G+ I I R++ +F + + P Sbjct: 96 LKEQARLGSLASDLQKVMEPLVKGGQVK---ITQSPKGVTIEI---RDSALFPIAQAQPA 149 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGV 304 P+++ VL ++ +VL+ I++ G TD P RN NW LS RA S ++ +++G+ Sbjct: 150 PQSLQVLAQMAKVLSQVDNPITVEGFTDNIPIRNTFYPSNWELSAARAGSVVRLFVENGI 209 Query: 305 SEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 + R+ + G A + L +A S+ ++NRR+ I V Sbjct: 210 APARLVAV-GRAEN-LPVADNTSEEGRASNRRVSITV 244 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 25/36 (69%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD 59 +D N W + YADF+T+L AFF+VM+ I++ ++ Sbjct: 8 EDEHENHERWLVSYADFITLLFAFFVVMYAISSVNE 43 >gi|146312113|ref|YP_001177187.1| flagellar motor protein MotB [Enterobacter sp. 638] gi|145318989|gb|ABP61136.1| OmpA/MotB domain protein [Enterobacter sp. 638] Length = 309 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 189 KKRL-QDLAKKISSTLSGLV-ADNIVKGVL----FETTRTGILISIIDQRNTPMFDKSSS 242 KKR+ Q KK+ L L+ AD ++ + + + G+ I IID +N PMF S+ Sbjct: 108 KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSA 167 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM 300 +L+ I VL IS+ GHTD + N + NW LS DRA ++ + L+ Sbjct: 168 EVEYYMRDILRGIAPVLNGIPNHISLSGHTDDFQYANGEKGYSNWELSADRANASRRELV 227 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ + ++ ++ G + P ++ NRRI +LV ++Q Sbjct: 228 AGGLDDGKVLRVVGMSSSMRVTDRGPEDAVNRRISLLVLNQQA 270 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +I+KK+ + GSWKI YADFMT +MAFFLVMW+++ + I Sbjct: 2 KNQSH-PIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLVSISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAITGGPRISNSESP 83 >gi|119897401|ref|YP_932614.1| flagellar motor protein MotD [Azoarcus sp. BH72] gi|119669814|emb|CAL93727.1| flagellar motor protein MotB [Azoarcus sp. BH72] Length = 279 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 16/160 (10%) Query: 190 KRLQDLAKKISSTLSGLVAD---NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +R++++A++I L+ L D +I +G GI + I + +F + Sbjct: 102 QRMRNMAEEIRRVLAPLTQDGQVSISEGAF------GIAVEI---NASVLFAPGEATLGA 152 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVS 305 + L+ + +VLA + I+I GHTD P N+ NW LS RA S ++ ++SGV Sbjct: 153 PAVSALRAVAQVLAGAEFPITIEGHTDNIPISNLRFPSNWELSAVRASSVVRLFIESGVR 212 Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 +R++ +G+A R +D + NRR+ I++E R G Sbjct: 213 AERLTA-AGYADQRPVAGNDTDAGRARNRRVTIMIESRVG 251 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 31/49 (63%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 + ++ ++D N W + YADF+T+L AFF+VM+ +++ ++ + + Sbjct: 1 MPRRRKLEDEHENHERWLVSYADFITLLFAFFVVMYSLSSINEGKYRVL 49 >gi|325290746|ref|YP_004266927.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966147|gb|ADY56926.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 273 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 10/136 (7%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 A+ I ++ T G+++SI D T +F S+ P + +LQKI VLA S I Sbjct: 125 ANGIESKLISSTEERGLVVSIQD---TLLFQPGSAEISPNALDILQKISSVLAASQNYIK 181 Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD 325 + GHT P R NW LS+ RA + +L +SG ++ R+S +G+ R IAS+ Sbjct: 182 VEGHTCTLPIHTSQYRSNWELSVIRATNVVHILAESGQINSKRLSA-TGYGEFR-PIASN 239 Query: 326 PMNSA---NRRIDILV 338 + NRR+D+++ Sbjct: 240 DTDEGRIKNRRVDLII 255 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + P N W I Y+D +T+LM FF+VM+ ++ D+D +A+ N Sbjct: 8 EAPENHERWLITYSDLITLLMIFFVVMYSMSKVDNDKFRAMADALN 53 >gi|167567201|ref|ZP_02360117.1| Chemotaxis lafU protein [Burkholderia oklahomensis EO147] Length = 303 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--I 280 G+ ++I D MF + S + + +L+ + VL+ T + I GHTDA+ + + Sbjct: 145 GVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASV 204 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +NW LS RA A Q L+ G+ E ++ ++SG + DP + NRR+++L+ Sbjct: 205 FSNNWSLSSRRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLL 262 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 +WK+ +ADF LMA F+V+W++N T +D ++ + G+ + GIF++++ Sbjct: 28 AWKVAFADFTLALMALFMVLWVMNVTPEDERRRVAAEIA--GQPIFEGGVGIFEQRS 82 >gi|167574625|ref|ZP_02367499.1| Chemotaxis lafU protein [Burkholderia oklahomensis C6786] Length = 303 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--I 280 G+ ++I D MF + S + + +L+ + VL+ T + I GHTDA+ + + Sbjct: 145 GVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASV 204 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +NW LS RA A Q L+ G+ E ++ ++SG + DP + NRR+++L+ Sbjct: 205 FSNNWSLSSRRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLL 262 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 +WK+ +ADF LMA F+V+W++N T +D ++ + GK + GIF++++ Sbjct: 28 AWKVAFADFTLALMALFMVLWVMNVTPEDERRRVAAEIA--GKPIFEGGVGIFEQRS 82 >gi|6045178|dbj|BAA85317.1| MotB protein, partial [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 176 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSESP 83 >gi|91777910|ref|YP_553118.1| putative flagellar motor protein motB [Burkholderia xenovorans LB400] gi|91690570|gb|ABE33768.1| Putative flagellar motor protein motB [Burkholderia xenovorans LB400] Length = 170 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 2 NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 NS + ++ +I+++ K D ++ G+WKI YAD +T +MAFFL+MW++ +T Sbjct: 6 NSRAPQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADCVTAMMAFFLLMWLLGSTSKY 65 Query: 61 TKKAIEQYFNPFGKNLMTASKG 82 K+ IE YFN +L+ ++G Sbjct: 66 DKQGIEDYFNTPLSSLIGGNEG 87 >gi|269965067|ref|ZP_06179232.1| flagellar motor protein [Vibrio alginolyticus 40B] gi|269830370|gb|EEZ84595.1| flagellar motor protein [Vibrio alginolyticus 40B] Length = 315 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 8 CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67 Query: 80 --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 KG I ++ P R ID+ + + IT+ +++ G +++ +R E Sbjct: 68 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGK--- 124 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 L+ Q E + T+++E + D+++ +KE +S+E ++ Sbjct: 125 LTGGQSPE----TSTQNNESAE-----ADMQQQQSKE-------MSQE----------ME 158 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L I +G + E G I +I R F + S+ P+ +++ Sbjct: 159 TLMESIKKALE----REIEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVR 212 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +I E++ ++ + GHTD P + R NW LS RA S Q + K+ Sbjct: 213 QIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQ----------EMEKV 262 Query: 313 SGFAHHRLKIA------------SDPMNSANRRIDI 336 GF+H RL++ SD + NRR++I Sbjct: 263 RGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRVEI 298 >gi|316933944|ref|YP_004108926.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601658|gb|ADU44193.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 284 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 63/124 (50%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + V+FE T G+ + + DQ PMF S+IP T ++ ++ L ++ ISI GHT Sbjct: 146 RNVIFEETPVGLNLELTDQDGRPMFADGSAIPYERTRKLVARLAAPLRATSLRISIVGHT 205 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 A+ + D LS++RA + ++L + G+ ++ + G PM +ANR Sbjct: 206 AATLMQVDDDDPLSLSINRANAVREILKQQGLPTSQVLSLVGKGDGDPLFPDAPMLAANR 265 Query: 333 RIDI 336 R+ I Sbjct: 266 RVTI 269 >gi|213584595|ref|ZP_03366421.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 161 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83 >gi|89100891|ref|ZP_01173740.1| flagellar motor protein [Bacillus sp. NRRL B-14911] gi|89084378|gb|EAR63530.1| flagellar motor protein [Bacillus sp. NRRL B-14911] Length = 269 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 68/315 (21%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP-P 90 SW I YAD +T+L+A F+V++ +++ D +A+ + FN + G FD +P P Sbjct: 17 SWLIPYADILTLLLALFIVLFAMSSVDARKFEALSKAFN----DAFNGGTGFFDFPSPMP 72 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + + Q S D+ T+N K+ + + Sbjct: 73 DGAMQ-----SADKADTEN----------------------------------KDEVEKA 93 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 S G LE+ N E ++ KI + K+ L+++ +K+ + + + Sbjct: 94 SAAGT-------LEEGQNDME-------AEGKIQKLTDKQELKEVEEKVKTYIQN---NG 136 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIR 269 + + T G+L++I R+ F S+ + + +IGE+L I I Sbjct: 137 LTDKLETSLTDEGLLVTI---RDNVFFASGSAEVRSGELTIADEIGELLVMDPPRNIIIS 193 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTD P +N NW LS+ RA + ++L+ + + R GF + ++D Sbjct: 194 GHTDNMPIKNSEFESNWELSVMRAVNFMKILLHNKDLDARAFSAKGFGEFQPAASNDTKE 253 Query: 329 S--ANRRIDILVEDR 341 NRR++IL+ R Sbjct: 254 GRDKNRRVEILILPR 268 >gi|46581013|ref|YP_011821.1| chemotaxis MotB protein [Desulfovibrio vulgaris str. Hildenborough] gi|120601691|ref|YP_966091.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450434|gb|AAS97081.1| chemotaxis MotB protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120561920|gb|ABM27664.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311234697|gb|ADP87551.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 243 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 22/39 (56%), Positives = 31/39 (79%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 SWK+ YADF+T +MAFFL+MWI+N T +TK+ + YF+ Sbjct: 9 SWKVAYADFVTAMMAFFLLMWILNMTSKETKEGLAGYFS 47 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A+ +K R +A + SG+ AD++ G+ + + + M+ S+ Sbjct: 89 AIAQKLRQMLMADATPQSASGISADDV-----------GVQLRV---NSDIMYAPGSAEL 134 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSG 303 PE VL + +L + +RGHTD+ RN I NW LS RA +A + ++ G Sbjct: 135 APEGAKVLDDVIRILKEYNLYLVVRGHTDSGEPRNSIYPSNWELSGARAAAAVRYIITHG 194 Query: 304 -VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336 + R+ I+ L+ + P + A NRR++ Sbjct: 195 EIKPTRLRSIAYADTRPLEPNTSPDSRAKNRRVEF 229 >gi|213855850|ref|ZP_03384090.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 172 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83 >gi|310767897|gb|ADP12847.1| Chemotaxis protein [Erwinia sp. Ejp617] Length = 343 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 43/81 (53%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N + I++ K+ + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +T + D +P Sbjct: 62 FKTPLKVALTGGQRSSDSSSP 82 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ + G+ I IID +N PMF S+ +L+ I +L IS+ GHTD Sbjct: 139 LIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRISLAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ R NW LS DRA ++ + L+ G++ ++ ++ G + +K+ + N A N Sbjct: 199 FPYPGGERGYSNWELSADRANASRRELVAGGLNSGKMLRVVGMS-DTMKLKNRGANDAVN 257 Query: 332 RRIDILV 338 RRI +LV Sbjct: 258 RRISLLV 264 >gi|292488570|ref|YP_003531454.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430] gi|292899741|ref|YP_003539110.1| chemotaxis protein [Erwinia amylovora ATCC 49946] gi|291199589|emb|CBJ46706.1| chemotaxis protein [Erwinia amylovora ATCC 49946] gi|291554001|emb|CBA21046.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora CFBP1430] gi|312172716|emb|CBX80972.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora ATCC BAA-2158] Length = 343 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 43/81 (53%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N + I++ K+ + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +T + D +P Sbjct: 62 FKTPLKVALTGGQRSSDSSSP 82 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ + G+ I IID +N PMF S+ +L+ I +L +S+ GHTD Sbjct: 139 LIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRLSLAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ R NW LS +RA ++ + L+ G++ ++ ++ G + +K+ + N A N Sbjct: 199 FPYAGGERGYSNWELSANRANASRRELVAGGLNSGKMLRVVGMS-DTMKLKNRGANDAVN 257 Query: 332 RRIDILV 338 RRI +LV Sbjct: 258 RRISLLV 264 >gi|259908189|ref|YP_002648545.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96] gi|224963811|emb|CAX55313.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96] gi|283478118|emb|CAY74034.1| Chemotaxis protein MotB (Motility protein B) [Erwinia pyrifoliae DSM 12163] Length = 343 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 43/81 (53%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N + I++ K+ + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNP 89 F K +T + D +P Sbjct: 62 FKTPLKVALTGGQRSSDSSSP 82 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ + G+ I IID +N PMF S+ +L+ I +L IS+ GHTD Sbjct: 139 LIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIAPILNQIPNRISLAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 P+ R NW LS DRA ++ + L+ G++ ++ ++ G + +K+ + N A N Sbjct: 199 FPYPGGERGYSNWELSADRANASRRELVAGGLNSGKMLRVVGMS-DTMKLKNRGANDAVN 257 Query: 332 RRIDILV 338 RRI +LV Sbjct: 258 RRISLLV 264 >gi|317047826|ref|YP_004115474.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b] gi|316949443|gb|ADU68918.1| OmpA/MotB domain protein [Pantoea sp. At-9b] Length = 342 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDIPNKISLAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 + R NW LS DRA ++ + LM G+ ++ ++ G A +K+ + N A N Sbjct: 199 FQYATGDRGYSNWELSADRANASRRELMMGGLDGSKMLRVVGMA-DTMKLKNRGGNDAVN 257 Query: 332 RRIDILV 338 RRI +LV Sbjct: 258 RRISLLV 264 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT +MAFF+VMW+++ + I +YF K +T + D +P Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIANPQQLVQIAEYFRTPLKVALTGGQRSSDSDSP 82 >gi|68304102|gb|AAY89709.1| MotB [Escherichia coli LW1655F+] Length = 144 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 11 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 68 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 69 EYFRTPLATAVTGGDRISNSESP 91 >gi|192361715|ref|YP_001982600.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107] gi|190687880|gb|ACE85558.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107] Length = 294 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/313 (21%), Positives = 131/313 (41%), Gaps = 62/313 (19%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I+ + + + Q F + A K D Q+ E Sbjct: 16 WLVSYADFITLLFAFFVVMYSISQVSESKYRVLSQTF-------VQAFKPTTDIQSNQEP 68 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 ++Q L+ + VDL + Q ++N +Q + +D+ Sbjct: 69 AAQ----LTPSNDVI-TPVDLGKTAVEQ-------------VTNDEQVPIISDQAPKDT- 109 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + LEK + K L ++ ++ S L+ + ++ Sbjct: 110 -------TPQLEKPV-------------------KTSDELAQISDLVTEKFSQLIDEQLI 143 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + L I+ +++ +F ++ P + +V+ +I +L + + I + G T Sbjct: 144 Q------VSSNELWLQIELKDSILFASGNADPSAQAMVIFDEISRILKNYSNPIQVEGFT 197 Query: 273 DASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 D P N AR NW LS RA + ++L G++ +R++ + + + P A Sbjct: 198 DNVPI-NSARYPTNWELSSARASAIVKILASKGIAPERLAAVGYGEFQPVASNATPEGRA 256 Query: 331 -NRRIDILVEDRQ 342 NRR+ I+V R+ Sbjct: 257 QNRRVAIMVAKRK 269 >gi|315126001|ref|YP_004068004.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913] gi|315014515|gb|ADT67853.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913] Length = 331 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 +KNQE I+IK+ + G+WK+ +ADF +MAFF+VMWI+ T++ ++ I Sbjct: 3 NKNQE----IVIKRSRRRATEKPHGGAWKVAFADFTLAMMAFFMVMWIMAITNESEREEI 58 Query: 66 EQYFNPFGKNLMTASKGIFDEQNPP 90 Y ++ IFD QN P Sbjct: 59 AHYMR--THSIFDGGPAIFDPQNSP 81 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L E G+ + I D ++ MF++S S P + +G ++ I I GH+DA Sbjct: 165 LLVEEVPLGLRVIIRDDKHHQMFERSKSQMTPFFEDLFLYLGGLVKDINNKIIISGHSDA 224 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 S F + + NW +S DRA A +V+ G+ ++ +++ F+ +R + S NRR+ Sbjct: 225 SLFIDGSSRNWDISGDRAQQARKVMTMGGMPSSQVLQVNAFSSNRPLNKENQKASENRRV 284 Query: 335 DILV 338 ++L+ Sbjct: 285 ELLI 288 >gi|328542461|ref|YP_004302570.1| OmpA family protein [polymorphum gilvum SL003B-26A1] gi|326412208|gb|ADZ69271.1| OmpA family protein [Polymorphum gilvum SL003B-26A1] Length = 283 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 I ++ E T G+ I I+DQ MF + S P T +L K+ VLA I I Sbjct: 141 EISSNIIMEETEEGLNILIVDQDGRSMFREGSKYPYETTRRLLAKMAPVLAEMPNRIQIT 200 Query: 270 GHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHT + + W LS DRA A +L + G+ D+I + G A +DP Sbjct: 201 GHTTTGGTTADPSYTGWELSSDRANIARMILTEYGIPADQIHSVVGKADSEPLFPNDPFL 260 Query: 329 SANRRIDILV 338 +ANRRI IL+ Sbjct: 261 AANRRIGILL 270 >gi|289806378|ref|ZP_06537007.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 130 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNP 89 +YF +T I + ++P Sbjct: 61 EYFRTPLATAVTGGNRIANSKSP 83 >gi|152965627|ref|YP_001361411.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216] gi|151360144|gb|ABS03147.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216] Length = 342 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 77/318 (24%), Positives = 129/318 (40%), Gaps = 77/318 (24%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN------LMTASKGIFDE 86 W + YAD +TVLMA F+V++ ++ D + Q+ + K ++ S GI + Sbjct: 23 WLVAYADMLTVLMALFIVLFALSQID---QLKFAQFKDGLTKGTSSSNQAVSGSAGILEA 79 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 N D+ ID IT NS T Q Q Q + + + + Q+ + Sbjct: 80 TNG---------DMPID--ITPNS-------TGQPLQ-QSVSTEVRKILQAAQTAQTQED 120 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS--TLS 204 L E+ +D + ++K+ A+ K + +I+S + Sbjct: 121 LKAAQEEVQDYRE------------------IAKQIDAALTAKGDQDQVTYRITSDGLVV 162 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 GLVADN+ F +S+ + VL I +LA Sbjct: 163 GLVADNV------------------------FFANASAEVEEKGREVLDVIAPILAQLPN 198 Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321 I+++GHT++ R DNW LS RA + Q +G+ + +S +G+A R L Sbjct: 199 DIAVQGHTNSLSLSATTRYRDNWDLSAARAMTVVQRFTAAGIPGNHLSG-TGYADSRPLY 257 Query: 322 IASDPMN-SANRRIDILV 338 DP + NRR+D++V Sbjct: 258 PNEDPKALTGNRRVDLVV 275 >gi|258510423|ref|YP_003183857.1| OmpA/MotB domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477149|gb|ACV57468.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 271 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 70/308 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+L+ FF+VM+ + +T D T+ A T ++ ++ +P + Sbjct: 16 WLVTYSDLITLLLVFFVVMFAM-STIDKTRFA-------------TLAESLYQALHPGQ- 60 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 +I L++ + L+ G N +Q+ N Q + N+ T++ + Sbjct: 61 ----QIPLNMG-----TTALLESGDQNNGQQFP---------DNLQNPNNPSNATTQNQQ 102 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 +DL + L+ + + Y S LSG V Sbjct: 103 SNEDLTDAKQLDLLYREIQQYI------------------------ASHHLSGEVQ---- 134 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + R G+ I++ R+ +F+ ++ LP+ +++ + + I + G+T Sbjct: 135 ---VIDEAR-GVQITM---RDVALFNTGQAVLLPKAKAIIEGLIPFFKQISNDIVVEGYT 187 Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SA 330 D P I NW LS RA S + L G++ R++ + +H + + P A Sbjct: 188 DTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGMGYGQYHPVASNATPAGRQA 247 Query: 331 NRRIDILV 338 NRR++I++ Sbjct: 248 NRRVNIVI 255 >gi|114565809|ref|YP_752963.1| hypothetical protein Swol_0240 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336744|gb|ABI67592.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 281 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 14/150 (9%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D A+K ST + ++DN++ ++E R G++IS D T +F S P ++Q Sbjct: 117 DEAQKGGSTSTTRLSDNLI---VYEQER-GLVISFKD---TMLFASGSDELTPRAREIIQ 169 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG-VSEDRIS 310 +IG L I + GHTD P N A+ NW LS+ RA + VL ++ + +R+S Sbjct: 170 QIGGALLKLPNFIRVEGHTDNRPI-NTAKFPSNWELSVLRASNVVHVLNENARIPAERLS 228 Query: 311 KISGFAHHRLKIA--SDPMNSANRRIDILV 338 I G+ +R +A SD + NRR+DI++ Sbjct: 229 -IIGYGENRPLVANDSDEGRAMNRRVDIVI 257 >gi|153956379|ref|YP_001397144.1| hypothetical protein CKL_3788 [Clostridium kluyveri DSM 555] gi|219856692|ref|YP_002473814.1| hypothetical protein CKR_3349 [Clostridium kluyveri NBRC 12016] gi|146349237|gb|EDK35773.1| MotB [Clostridium kluyveri DSM 555] gi|219570416|dbj|BAH08400.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 254 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 21/160 (13%) Query: 188 RKKRLQDLAKKI-----SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 ++K+L +L ++ +S +SG V+ +I G+++S+ D + +FD + Sbjct: 87 QEKKLSELKSEVDKYLQNSEMSGSVSTSI--------NERGLIVSMND---SLLFDTGKA 135 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK 301 PE L +IG++L + I GHTD P N NW+LS DRA + + L+K Sbjct: 136 DIKPEFQQKLVEIGKILNQLGNYMRIEGHTDNIPISNNQYSSNWKLSCDRASNVTEFLIK 195 Query: 302 S-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 S G+ +++S I G+ +R ++D + NRR+DI++ Sbjct: 196 SAGIEPEKLSAI-GYGEYRPVGDNSTDEGKAKNRRVDIVI 234 >gi|289523562|ref|ZP_06440416.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503254|gb|EFD24418.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 239 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 196 AKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 KK+ + L+ ++N++ V GI+ISIID +F S +P ++ K Sbjct: 91 VKKVHEMMVQLLESENLMNEVTVRIEERGIVISIIDGL---LFQSGSVELIPPARRLIYK 147 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I +++ IS+ GHTD P R RDNW LS RA L+++G+ R+ + Sbjct: 148 IAQIINDLPNQISVEGHTDNVPLNRGPYRDNWGLSAMRAAVVGSYLVEAGIDPKRLRTV- 206 Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338 G+ R + +D NRR+DI++ Sbjct: 207 GYGQSRPLVPNDTEEHRRINRRVDIVI 233 >gi|218290401|ref|ZP_03494531.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239529|gb|EED06723.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 271 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 70/308 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+L+ FF+VM+ + +T D T+ A T ++ ++ +P + Sbjct: 16 WLVTYSDLITLLLVFFVVMFAM-STIDKTRFA-------------TLAESLYQALHPGQ- 60 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 +I L++ + L+ G N +Q+ N Q + N+ T++ + Sbjct: 61 ----QIPLNMG-----TTALLESGDQNNGQQFP---------DNLQNPNNPSNATTQNQQ 102 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 +DL + L+ + + Y S LSG V Sbjct: 103 SNEDLTDAKQLDLLYREIQQYI------------------------ASHHLSGEVQ---- 134 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + R G+ I++ R+ +F+ ++ LP+ +++ + + I + G+T Sbjct: 135 ---VIDEAR-GVQITM---RDVALFNTGQAVLLPKAKAIIEGLIPFFKQISNDIVVEGYT 187 Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SA 330 D P I NW LS RA S + L G++ R++ + +H + + P A Sbjct: 188 DTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGMGYGQYHPVASNATPAGRQA 247 Query: 331 NRRIDILV 338 NRR++I++ Sbjct: 248 NRRVNIVI 255 >gi|24375768|ref|NP_719811.1| flagellar motor protein MotB [Shewanella oneidensis MR-1] gi|24350713|gb|AAN57255.1|AE015861_7 chemotaxis motB protein [Shewanella oneidensis MR-1] Length = 275 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 87/327 (26%), Positives = 139/327 (42%), Gaps = 74/327 (22%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KKKV D P N W I YADFMT+L A F+V++ +D + K + + Sbjct: 3 KKKV---DPPENHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVE---------- 49 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD-LKIGSTNQKKQYQRLENNIFYLSN 136 G+ D S +KI L I+ +V+ L G T+ LE N + Sbjct: 50 ----GLID--------SLSKIGL-----ISTPAVNALAPGGTSI------LEPNTVTSAV 86 Query: 137 SQQSEHCKNSLTRD--SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + + + + T SE DL + KS + Y ++I++ K K +++ Sbjct: 87 DAEPKLIETATTAPSTSESNNDLTNA----KSNDTIRKY-------KEIISAKLKNEIEN 135 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +I V+DN++ + T + I + P+ DK Sbjct: 136 QEVEIDE-----VSDNLIIRIGDNNTFFASGSAFIQPKFIPLIDK--------------- 175 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 IGEV+A + I GHTDA+ I DNW LS RA + +++ K+ GV+ RI + Sbjct: 176 IGEVIASVPGRVVIAGHTDATLPMEIYADNWDLSSLRATAVVRIMTKNKGVNPSRII-VQ 234 Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338 G A + + +D NRRI+I++ Sbjct: 235 GLADTQPRFQNDTPEHRQKNRRIEIIL 261 >gi|331006559|ref|ZP_08329851.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] gi|330419628|gb|EGG94002.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] Length = 325 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 13/173 (7%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---NIVKG-VLFETTRTGILISIIDQRN 233 + KE + +K K++L+DL ++ + L D IV G + ET I++ I R Sbjct: 119 IDKEAGVKLKIKQQLEDLIRETQNDARELANDLREQIVAGEIEIETDGRKIIVRI---RE 175 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 F S I + V+ I E + I ++GHTD P R+ R NW LS RA Sbjct: 176 KGSFQSGSHIMNDDYYDVMDDIREAVLTKPGKIQVQGHTDNIPIRSARYRSNWELSTARA 235 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 S Q LM V R ++SGFA + + S+ S NRR++I++ RQG Sbjct: 236 VSVAQALMDGDVDPRRF-EVSGFADTQSLVDNNSEENRSRNRRVEIVI--RQG 285 >gi|296122828|ref|YP_003630606.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] gi|296015168|gb|ADG68407.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] Length = 296 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 G+WK+ YADF+T +MAFFLVMW++ + + K A+ YF P Sbjct: 7 GAWKVAYADFVTAMMAFFLVMWLVGQS-KEVKTAVAHYFQP 46 >gi|289807272|ref|ZP_06537901.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 135 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 2/102 (1%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD P Sbjct: 18 IDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFP 77 Query: 277 FRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + N + NW LS DRA ++ + L+ G+ ++ ++ G A Sbjct: 78 YANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMA 119 >gi|94986926|ref|YP_594859.1| flagellar motor protein [Lawsonia intracellularis PHE/MN1-00] gi|94731175|emb|CAJ54537.1| Flagellar motor protein [Lawsonia intracellularis PHE/MN1-00] Length = 237 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 30/40 (75%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 GSWK+ YADF+T +MAFFL+MWI+ T + K+ + YF+ Sbjct: 3 GSWKVAYADFVTAMMAFFLLMWILAMTPPEVKEGLAAYFS 42 >gi|56695114|ref|YP_165461.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3] gi|56676851|gb|AAV93517.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3] Length = 285 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 31/39 (79%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +WK+ YADF+T +MAFF++MW++NAT + +K + YF+ Sbjct: 34 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFS 72 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 14/150 (9%) Query: 197 KKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 K + + L G LV++ + K ++ T G+++ +I +P+F+ +S P + Sbjct: 137 KTLEAALQGRGGESLVSEQLRKHIVTRVTDEGLIVELISTDESPLFETNSDRPTQ----L 192 Query: 252 LQKIGEVLAHSTEVIS----IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++++ +V+ + +++S + GH A P W LS RA + G+ E+ Sbjct: 193 MKELAKVVVRAADMVSNGIAVGGHIRAHPVVLARNPVWELSTARAERTRVLFEGLGMKEE 252 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDIL 337 RI +++G A +L +PM + N RI+I+ Sbjct: 253 RIQRVTGHADRKLT-DPNPMAARNDRIEII 281 >gi|42524629|ref|NP_970009.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100] gi|39576839|emb|CAE78068.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100] Length = 318 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 18/125 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E Q I+IKK + + ++ GSWK+ ADFMT LMAFFLVMW++ + ++TKKA+ YF Sbjct: 3 EKKQTIVIKK-IIVSGGGHHGGSWKVALADFMTALMAFFLVMWLVGQS-EETKKAVSDYF 60 Query: 70 NP----------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 + FG + T K D N P ++ Q S E K L +GST Sbjct: 61 STPSVIEYNFQNFGAEI-TLEKLFLDILNEPLKAFQ-----SFMEPADKTPNLLDMGSTK 114 Query: 120 QKKQY 124 Y Sbjct: 115 VVAAY 119 >gi|254517028|ref|ZP_05129086.1| flagellar motor protein [gamma proteobacterium NOR5-3] gi|219674533|gb|EED30901.1| flagellar motor protein [gamma proteobacterium NOR5-3] Length = 286 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 21/164 (12%) Query: 195 LAKKISSTLSGLVAD-NIVKGVLFETTRTG----------ILISIIDQRNTPMFDKSSSI 243 L +KI++ L+ AD +K +L + T+TG I + I +Q + P S S Sbjct: 103 LQQKITALLAETQADAEKLKDMLEDETQTGKVDVESDGRTITVRIREQGSFP----SGSA 158 Query: 244 PLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMK 301 L V V+Q+I + L ISI GHTD++P R + NW LS RA S L++ Sbjct: 159 NLNTDFVPVMQRIRDALVEIPGTISIEGHTDSTPLRGGRYESNWGLSSSRALSVTHELLR 218 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 G+ +D + GFA R +D + ++NRR++I++ RQG Sbjct: 219 DGLLKDDRMMVVGFADTRPFTFNDTVEGRASNRRVEIVI--RQG 260 >gi|297544067|ref|YP_003676369.1| OmpA/MotB domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841842|gb|ADH60358.1| OmpA/MotB domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 239 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 9/146 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L G V +N ++G++ G++IS+ D T +FD S+ PE VL KIG Sbjct: 84 EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQD---TLLFDLGSADVHPEEKDVLIKIG 140 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + G TD P N D NW LS+ RA + ++L+ ++GV +IS + G Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 + +R + +D NRR+DI++ Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVI 225 >gi|291617784|ref|YP_003520526.1| MotB [Pantoea ananatis LMG 20103] gi|291152814|gb|ADD77398.1| MotB [Pantoea ananatis LMG 20103] gi|327394202|dbj|BAK11624.1| chemotaxis protein MotB [Pantoea ananatis AJ13355] Length = 424 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT +MAFF+VMW+++ I +YF K +T + D +P Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIASPQQLIQIAEYFQTPLKVALTGGQRSSDSSSP 82 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I IID +N PMF S+ P +L+ I VL ISI GHTD + + Sbjct: 147 GLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDIPNRISIAGHTDDIQYAGGDK 206 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 NW LS DRA ++ + L+ G+ +I +I G A +K+ + + A NRRI +LV Sbjct: 207 GYSNWELSADRANASRRELVIGGLDGGKILRIVGMA-DTMKLKNRGGDDAVNRRISLLV 264 >gi|289577780|ref|YP_003476407.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9] gi|289527493|gb|ADD01845.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9] Length = 239 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 9/146 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L G V +N ++G++ G++IS+ D T +FD S+ PE VL KIG Sbjct: 84 EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQD---TILFDLGSADVHPEEKDVLIKIG 140 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + G TD P N D NW LS+ RA + ++L+ ++GV +IS + G Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 + +R + +D NRR+DI++ Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVI 225 >gi|308126360|ref|ZP_07663727.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] gi|308109365|gb|EFO46905.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] Length = 161 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293 MF + + P +L + + T + I GHTDA PF R + NW LS RA Sbjct: 1 MFSRGGAELTPFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRAD 60 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 A + L++ G+ +DR+ +++G + L +P +S NRRI++ + Sbjct: 61 VARKTLVEGGMPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFI 105 >gi|329298550|ref|ZP_08255886.1| OmpA/MotB domain-containing protein [Plautia stali symbiont] Length = 319 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT ++AFF+VMW+I+ + I +YF K +T + D ++P Sbjct: 24 GSWKIAYADFMTAMVAFFMVMWLISIANPQELVQIAEYFKTPLKVALTGGQRSSDSESP 82 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 4/127 (3%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRVIAPLLNDIPNKISLSGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-N 331 + + R NW LS DRA ++ + L+ G+ ++ ++ G A +K+ + N A N Sbjct: 199 FQYASGDRGYSNWELSADRANASRRELVAGGLDGGKMLRVVGMA-DTMKLKNRGANDAVN 257 Query: 332 RRIDILV 338 RRI +LV Sbjct: 258 RRISLLV 264 >gi|2130949|dbj|BAA20285.1| PomB [Vibrio alginolyticus] Length = 315 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 67/336 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 8 CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67 Query: 80 --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 KG I ++ P R ID+ + + IT+ +++ G +++ +R E Sbjct: 68 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGK--- 124 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 L+ Q + T+++E + D+++ +KE +S+E ++ Sbjct: 125 LTGGQ----SPATSTQNNESAE-----ADMQQQQSKE-------MSQE----------ME 158 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L I +G + E G I +I R F + S+ P+ +++ Sbjct: 159 TLMESIKKALE----REIEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVR 212 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +I E++ ++ + GHTD P + R NW LS RA S Q + K+ Sbjct: 213 QIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQ----------EMEKV 262 Query: 313 SGFAHHRLKIA------------SDPMNSANRRIDI 336 GF+H RL++ SD + NRR++I Sbjct: 263 RGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRVEI 298 >gi|308126352|ref|ZP_07663724.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] gi|308109323|gb|EFO46863.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] Length = 182 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + K D P+ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHI 106 + S +FD+ NP + S S + IDL+ D + Sbjct: 61 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV 92 >gi|300717114|ref|YP_003741917.1| flagellar motor protein [Erwinia billingiae Eb661] gi|299062950|emb|CAX60070.1| Flagellar motor protein [Erwinia billingiae Eb661] Length = 346 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N+ II+ KK GSWKI YADFMT +MAFF+VMW+++ + I Y Sbjct: 2 KHNNHPIILVKKKKHKRHEGGHGSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61 Query: 69 F-NPFGKNLMTASK 81 F P L SK Sbjct: 62 FKTPLKVALTGGSK 75 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 2/126 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ G+ I IID N PMF + P +L+ I +L IS+ GHTD Sbjct: 139 LIINMVEEGLRIQIIDSENRPMFKTGRAEVEPYMRDILRAIAPILNDIPNKISLAGHTDD 198 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 + N R NW LS DRA ++ + L+ G+ ++ ++ G A ++ NR Sbjct: 199 FQYANGDRGYSNWELSADRANASRRELVTGGLDSGKMLRVVGMADTMSLKNRGADDAVNR 258 Query: 333 RIDILV 338 RI +LV Sbjct: 259 RISLLV 264 >gi|294339857|emb|CAZ88220.1| putative outer membrane OmpA/MotB protein [Thiomonas sp. 3As] Length = 293 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 78/310 (25%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K + Q ++ A G + Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSLNEGKYKVLSQ-------TMIAAFTG--------QP 60 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 ++ N + + + +++DL QK + E Sbjct: 61 TTPNPVQVGQPFNSMPSAIDLPPIPKQQKPEI--------------------------IE 94 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G+ + +++K+ LQ +A+KI + L+A I Sbjct: 95 PGRGGPGAKEVQKT-------------------------LQGVAEKIQT----LLASAIR 125 Query: 213 KG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 KG V T G++I I D T +F + P+ +L +I VL I + G Sbjct: 126 KGDVRVRMTPLGVVIDIHD---TVLFASGQAALTPQAQDLLNQIAGVLQGVAYPIQVNGF 182 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 TD P NW LS RA S ++ ++ GV +++ +G+ + ++D Sbjct: 183 TDDRPINTPQFGSNWALSSARAVSVVEMFIEQGVKPEQLVA-AGYGQYHPVESNDTAKGR 241 Query: 329 SANRRIDILV 338 +ANRR+ +++ Sbjct: 242 AANRRVSVVI 251 >gi|330447921|ref|ZP_08311569.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492112|dbj|GAA06066.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 332 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ I + D MF + S+ P VL I + + + I GHTDA+ F Sbjct: 152 DVTPQGLRIILQDDFKQNMFHRGSANLTPFFEDVLLNIAPIFKQISNSLIISGHTDATQF 211 Query: 278 RN-IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 ++ +R NW LS RA A Q L+ G+ +R+ +++G A L P S NRRI+ Sbjct: 212 KSKFSRSTNWELSSSRANVARQTLIAGGMPSNRVLQVAGMAERALLNKQSPDASENRRIE 271 Query: 336 ILV 338 + + Sbjct: 272 LFI 274 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 I+ K+ ++ G+WK+ +ADFM LMA FLV+W++ D +KAI Y N Sbjct: 7 IVFKRAAKRHSNEHHGGAWKVAFADFMIALMALFLVLWLMQVVDQQERKAIVAYVN---- 62 Query: 75 NLMTASKGIFDE 86 S +FDE Sbjct: 63 -----SASVFDE 69 >gi|20807043|ref|NP_622214.1| flagellar motor protein [Thermoanaerobacter tengcongensis MB4] gi|254479612|ref|ZP_05092920.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653] gi|20515530|gb|AAM23818.1| Flagellar motor protein [Thermoanaerobacter tengcongensis MB4] gi|214034455|gb|EEB75221.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653] Length = 237 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 13/173 (7%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR--TGILISII 229 NY L S + ++ + + D ++ + L + ++ ++G++ T R G+++S+ Sbjct: 59 NYILGKYSGKSVVPGNAENK--DNLGEVQAQLQAFIKESNLQGMV-STYRDERGLVVSLQ 115 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLS 288 D T +FD S+ PE VL KIG++L + I + G TD P N D NW LS Sbjct: 116 D---TLLFDLGSADVHPEEKEVLIKIGKMLKNLPNYIRVEGFTDDLPIHNQKFDSNWELS 172 Query: 289 LDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + RA + ++L+ + G+ RIS + G+ +R + +D NRR+DI++ Sbjct: 173 VIRATTVVKILVNEVGIEPQRISAV-GYGEYRPIVPNDSEEHRRLNRRVDIVI 224 >gi|92114147|ref|YP_574075.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91797237|gb|ABE59376.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 330 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+ I ++D PMF+ S+ P +LQ + L IS+ GHTD + + Sbjct: 145 GLRIQLVDTDKRPMFELGSARLAPYMRDLLQALAPELNDVPNAISLTGHTDDLRYAGGEK 204 Query: 283 D--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ +G+ ++ ++SG + P ++ NRRI I+V Sbjct: 205 GYSNWELSADRANASRRALVAAGLDSSKLLRVSGMGARVNLEGTQPSDAVNRRISIVV 262 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 27/39 (69%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 G+WKI YADFMT LMA FLV+WI++ + I +YF Sbjct: 22 GNWKIAYADFMTALMALFLVLWILSMVPKNELDNIAEYF 60 >gi|213419089|ref|ZP_03352155.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 126 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT +MAFFLVMW+I+ + I +YF +T I + ++P Sbjct: 1 GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSP 59 >gi|167038133|ref|YP_001665711.1| OmpA/MotB domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039156|ref|YP_001662141.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514] gi|256750878|ref|ZP_05491762.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913254|ref|ZP_07130571.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561] gi|307723732|ref|YP_003903483.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X513] gi|320116543|ref|YP_004186702.1| OmpA/MotB domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853396|gb|ABY91805.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X514] gi|166856967|gb|ABY95375.1| OmpA/MotB domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750213|gb|EEU63233.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889939|gb|EFK85084.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561] gi|307580793|gb|ADN54192.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X513] gi|319929634|gb|ADV80319.1| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 238 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 12/138 (8%) Query: 212 VKGVLFETTRTGILISIIDQR-------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 +KG + E G + S ID+R ++ +FD S+ PE VL KIG++L Sbjct: 89 LKGFIKENNLQGAVTSYIDERGLVISLQDSLLFDLGSADVRPEEKEVLIKIGDMLKSLPN 148 Query: 265 VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKI 322 I + G TD P N D NW LS+ RA + ++L+ + G+ RIS + G+ +R + Sbjct: 149 HIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVNEVGIEPARISAV-GYGEYRPVV 207 Query: 323 A--SDPMNSANRRIDILV 338 S+ NRR+DI++ Sbjct: 208 PNNSEENRRLNRRVDIVI 225 >gi|83589323|ref|YP_429332.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] gi|83572237|gb|ABC18789.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] Length = 249 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 14/131 (10%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V T G+++S+ D +F K S+ PE +L+++G LA + + GHTD Sbjct: 111 VTLNTEERGLVVSVADAV---LFPKGSADLTPEARDLLRQVGRALARLPNYLRVEGHTDN 167 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 P A NW LS RA + +VL+ ++G+ +R+S +G+ +R +A P NS Sbjct: 168 LPINTPAFPSNWELSTARATNVVKVLISEAGIKPERLSA-TGYGEYR-PVA--PNNSEAD 223 Query: 331 ---NRRIDILV 338 NRR+DI+V Sbjct: 224 MARNRRVDIVV 234 >gi|90021803|ref|YP_527630.1| Fis family transcriptional regulator [Saccharophagus degradans 2-40] gi|89951403|gb|ABD81418.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 288 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 16/153 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPMFDKSSSIPLPETI 249 L+ + +++ LSG++A E T G + I+ N+ F + P E Sbjct: 79 LKQIEQQLEQALSGVLATG-------EVTLNGNQNWVEIVIDANS-FFSSGQATPSDEAR 130 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL K+ ++++ +++ GHTD +P N ++NW LS RA + +L +GVS +R Sbjct: 131 TVLNKVADIISPFDNAVAVGGHTDDTPINNAQFKNNWELSSARAVTVVNLLAFAGVSPER 190 Query: 309 ISKISGFAHHRLKIASDPM---NSANRRIDILV 338 +S + G+ +R IA + SANRR+ + V Sbjct: 191 MSAV-GYGEYR-PIADNQTPEGRSANRRVVLRV 221 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 24/35 (68%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ ++ ++ + + + Sbjct: 16 WLVSYADFITLLFAFFVVMYSVSQVNETKYRTLSE 50 >gi|313200583|ref|YP_004039241.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312439899|gb|ADQ84005.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 313 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 174 FLPPLSKEKILAMKRKKR--LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 F+ PL + +R++R + +A +++ L+ +V + +K + + R G+ + I D Sbjct: 86 FIRPLELARRNDKQRREREAMTAMANNLANHLAPMVLEGKIK--VMQNNR-GVRVDIHD- 141 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290 + +F +S P L +I + L + I + GHTD P N NW LS Sbjct: 142 --SLLFAPGASELQPIASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAM 199 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 RA S ++L SG+ E R+S + A L+ S P+ A NRR+ I++ Sbjct: 200 RASSVVRMLQDSGLDEKRLSAVGFGASQPLEDNSTPLGRARNRRVSIMI 248 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 28/40 (70%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58 ++ +++ +N W + YADF+T+L AFF+VM+ I++ + Sbjct: 2 RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVN 41 >gi|253998497|ref|YP_003050560.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4] gi|253985176|gb|ACT50033.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] Length = 313 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 174 FLPPLSKEKILAMKRKKR--LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 F+ PL + +R++R + +A +++ L+ +V + +K + + R G+ + I D Sbjct: 86 FIRPLELARRNDKQRREREAMTAMANNLANHLAPMVLEGKIK--VMQNNR-GVRVDIHD- 141 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290 + +F +S P L +I + L + I + GHTD P N NW LS Sbjct: 142 --SLLFAPGASELQPIASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAM 199 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 RA S ++L SG+ E R+S + A L+ S P+ A NRR+ I++ Sbjct: 200 RASSVVRMLQDSGLDEKRLSAVGFGASQPLEDNSTPLGRARNRRVSIMI 248 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 28/40 (70%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58 ++ +++ +N W + YADF+T+L AFF+VM+ I++ + Sbjct: 2 RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVN 41 >gi|88799579|ref|ZP_01115155.1| Flagellar motor protein [Reinekea sp. MED297] gi|88777664|gb|EAR08863.1| Flagellar motor protein [Reinekea sp. MED297] Length = 319 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 55/317 (17%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 L +W ++D M +LM FF+++ + D K+ N FG Sbjct: 14 GLPAWMATFSDLMALLMCFFVLLLSFSEMDALKFKRLAGSLRNAFG-------------- 59 Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ--RLENNIFYLSNSQQSEHCKN 145 Q +I N+ D+ G++ K++ R E + K+ Sbjct: 60 ------VQAEI----------NANDVPKGTSIIAKEFSPGRPEPTPLNVVRQDTVADLKD 103 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 SL + LC+ T ++ +E ++++ I++ + + L+D A +I+ LS Sbjct: 104 SL-------EILCQDT---FTMQEEAQGDQGQMTRQVIISDEAMQELEDEAARIAQALS- 152 Query: 206 LVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 D I +G+L ET I+I + +Q F S E + VL K+ E+L + Sbjct: 153 ---DEIAEGMLQIETVNETIIIRVKEQS----FTGGSDYVADEFLPVLDKVRELLVTTPG 205 Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI 322 I + GHTD P R+NW LS RA S + L + ++E+R + + + + Sbjct: 206 DIWVEGHTDNVPIATSQFRNNWLLSAARALSVAEYLFIAPEMAEERFTIVGHGSTKPIAS 265 Query: 323 ASDPMNSA-NRRIDILV 338 P A NRR++I++ Sbjct: 266 NETPEGRAQNRRVEIII 282 >gi|192291615|ref|YP_001992220.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|192285364|gb|ACF01745.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 285 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K V+FE T G+ + + DQ PMF S++P T ++ ++ L ++ + I GHT Sbjct: 147 KNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPLRATSLRVIIVGHT 206 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 A+ + D LS++RA + +VL + G+ ++ + G P +ANR Sbjct: 207 AATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGEPLFPDAPALAANR 266 Query: 333 RIDI 336 R+ I Sbjct: 267 RVTI 270 >gi|307265590|ref|ZP_07547144.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919388|gb|EFN49608.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 237 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 9/146 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L+G + +N ++G++ G++IS+ D + +FD S+ PE VL KIG Sbjct: 83 EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQD---SLLFDLGSADVHPEEKDVLIKIG 139 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + G TD P N D NW LS+ RA + ++L+ + G+ RIS + G Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 + +R + +D NRR+DI++ Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVI 224 >gi|4322001|gb|AAD15905.1| sodium-driven polar flagellar protein [Vibrio parahaemolyticus] Length = 315 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 67/336 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 8 CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67 Query: 80 --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 KG I ++ P R ID+ + + IT+ +++ G +++ +R E Sbjct: 68 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGK--- 124 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 L+ Q E S + +D+++ +KE +S+E ++ Sbjct: 125 LTGGQSPETSTQS---------NQSAESDMQQQQSKE-------MSQE----------ME 158 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L I +G + E G I +I R F + S+ P+ +++ Sbjct: 159 TLMESIKKALE----REIEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVR 212 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +I E++ ++ I GHTD + R NW LS RA S Q + K+ Sbjct: 213 QIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQ----------EMEKV 262 Query: 313 SGFAHHRLKIA------------SDPMNSANRRIDI 336 GF+H RL++ SD + NRR++I Sbjct: 263 RGFSHQRLRVRGMADTEPLVPNDSDENRALNRRVEI 298 >gi|312884825|ref|ZP_07744517.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC BAA-2122] gi|309367477|gb|EFP95037.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC BAA-2122] Length = 331 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++RL LAK I N +G V T G+ + + D MF + S P Sbjct: 126 QERLAALAKVIEEA----TKQNGAQGNVNITVTPQGLRVVLQDDEKQTMFSRGGSKLTPF 181 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGV 304 +L I + I I GHTD+ ++ NI + NW LS RA +A L+++G+ Sbjct: 182 FEDLLVAIAPIFEKVANPIIISGHTDSIRYKSRFNI-KSNWELSTSRANAARYTLVQAGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +R+ +++G + L P +S NRRI++ V Sbjct: 241 PSERVLQVTGMSDRALLNPQAPKSSENRRIELFV 274 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI--------- 65 ++ K+ + D + G+WK+ +ADFM LMA FLV+WI+ D + +KAI Sbjct: 7 VVFKRSKSEDHDVVHGGAWKVAFADFMIALMALFLVLWIMQVVDREERKAIMAHLHSASV 66 Query: 66 --EQYFNPFGKNLMTASKGIFDEQNPPER 92 + Y NPF + + + E + P R Sbjct: 67 FEKSYGNPFDTSQSISPIDLASESSVPSR 95 >gi|319787078|ref|YP_004146553.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465590|gb|ADV27322.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 323 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 53/310 (17%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I+ + E + L A G NP Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISTLN-------EGKYRVLADALTAAFGGAPRTINP-- 65 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +++G+ +L+ F + QS R Sbjct: 66 ---------------------VQVGN-------HQLQGADFDRPSPIQSG------ARSG 91 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 + L ++ +P ++ + +++L +A ++ LS LV + Sbjct: 92 PSAPSPAPNPTLLPALASHMRTGVPVDVSDRATVQRAQRQLGTIAARLEEALSPLVDARL 151 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + T R L ++ + +FD S+ VL ++ +VL + + + G+ Sbjct: 152 I------TVRRAELWLEVEINSDILFDTGSASLDASARQVLSRLADVLRDTPNPVRVEGY 205 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMN 328 TD P + NW LS RA S + +GV+ +R++ + G+ HR + ++ Sbjct: 206 TDDRPINTVQFPSNWELSAARAASVVHLFSANGVAPERLAMV-GYGEHRPRADNLTEEGR 264 Query: 329 SANRRIDILV 338 + NRR+ ++V Sbjct: 265 NRNRRVVLIV 274 >gi|538830|pir||F40590 motB homolog lafU - Vibrio parahaemolyticus (fragment) Length = 202 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + K D P+ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHG-GAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 60 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHI 106 + S +FD+ NP + S S + IDL+ D + Sbjct: 61 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV 92 >gi|326389648|ref|ZP_08211214.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325994363|gb|EGD52789.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 237 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 9/146 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L+G + +N ++G++ G++IS+ D + +FD S+ PE VL KIG Sbjct: 83 EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQD---SLLFDLGSADVHPEEKDVLIKIG 139 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + G TD P N D NW LS+ RA + ++L+ + G+ RIS + G Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 + +R + +D NRR+DI++ Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVI 224 >gi|225849649|ref|YP_002729883.1| flagellar motor protein MotB [Persephonella marina EX-H1] gi|225645473|gb|ACO03659.1| flagellar motor protein MotB [Persephonella marina EX-H1] Length = 231 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 MF S+ P E + +L ++ + L + I+I GHTD +P R + N LS +RA S Sbjct: 126 MFPSGSATPYKEVVPLLLEVCKRLKETQFPITIEGHTDNTPIR--FKSNLELSAERALSV 183 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVE 339 + L KS DR+ G+ +R + +D P N A NRRI+I+++ Sbjct: 184 LK-LFKSCGYPDRLLSARGYGEYRPLVPNDTPENRAKNRRIEIVID 228 >gi|134300281|ref|YP_001113777.1| OmpA/MotB domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052981|gb|ABO50952.1| OmpA/MotB domain protein [Desulfotomaculum reducens MI-1] Length = 261 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQR 232 +P S+ K L ++ Q +KI + V N + G V G+++S D Sbjct: 70 MVPGASESKELDTAMEQIEQQKMEKIKKQIQEYVDKNGLSGKVTVAIEERGVVVSFQD-- 127 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDR 291 +F + +P + ++ K+G +L+ + I + GHTD P + N NW LSL R Sbjct: 128 -VVLFPLGVADLVPHSQGIVDKVGAILSQTPNYIRVEGHTDNLPIQTNKFPSNWELSLAR 186 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 + S L+ S + DR+S +G+ +R + A SD NRR+DI+V Sbjct: 187 SASVVHRLINFSHIPPDRLSA-TGYGEYRPRRANDSDANRQQNRRVDIIV 235 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP--- 89 W I Y+D +T+L+ FF+VM+ ++ D + AI M S+ I + P Sbjct: 16 WLITYSDLITLLLIFFVVMYTLSKVDANKYHAIASSL----AKTMGGSQSIMESGGPSMV 71 Query: 90 PERSSQNKIDLSIDE 104 P S ++D ++++ Sbjct: 72 PGASESKELDTAMEQ 86 >gi|304317567|ref|YP_003852712.1| OmpA/MotB domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779069|gb|ADL69628.1| OmpA/MotB domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 240 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIID 230 NY + S IL + I S L L+ +N+ V ++ G +IS+ D Sbjct: 61 NYVVGQYSGNSILDSIKTTNNTSTDNTIESQLDKLIKQNNLQNMVTYKVDERGFVISLND 120 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSL 289 T +FD S+ P+ L KIG +L I + G+TD P N NW LS+ Sbjct: 121 ---TLLFDTGSADVKPDQKATLIKIGNILKAMPNYIRVEGYTDNVPINNSQFHSNWELSV 177 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 RA + ++L+ + +IS + G+ +R + SD NRR+DI++ Sbjct: 178 IRATNVVEILVNDVKIDPAKISAV-GYGEYRPIVPNDSDKNRQLNRRVDIVI 228 >gi|88704266|ref|ZP_01101980.1| motB family protein [Congregibacter litoralis KT71] gi|88701317|gb|EAQ98422.1| motB family protein [Congregibacter litoralis KT71] Length = 286 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 21/164 (12%) Query: 195 LAKKISSTLSGLVAD-NIVKGVLFETTRTG----------ILISIIDQRNTPMFDKSSSI 243 L +KI++ L+ AD + +K +L + +TG I + I +Q + P S S Sbjct: 103 LQQKITALLAETEADADKLKDMLEDEVQTGKVDVESDGRTITVRIREQGSFP----SGSA 158 Query: 244 PLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMK 301 L V V+ +I E L ISI GHTD++P R + NW LS RA S L++ Sbjct: 159 TLNTDFVPVMARIREALTEIPGTISIEGHTDSTPLRGGRYESNWGLSSSRALSVTHELLR 218 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 G+ +D + GFA R +D + ++NRR++I++ RQG Sbjct: 219 EGLLKDDRMMVVGFADTRPFTFNDTVEGRASNRRVEIVI--RQG 260 >gi|127513695|ref|YP_001094892.1| flagellar motor protein MotB [Shewanella loihica PV-4] gi|126638990|gb|ABO24633.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 314 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 80/339 (23%), Positives = 141/339 (41%), Gaps = 55/339 (16%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73 + KKV D P W +AD M++LM FF+++ + D K I FG Sbjct: 1 MAKKVKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 74 -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK--QY 124 K++ + I E P PE + I+ +E +T+ +++++ G + Q Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNE-MTEPTIEVQAGEDDSAGGVQQ 119 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 QR E S++ Q E DSE +K++ Sbjct: 120 QRGEQRGGEASSTAQEEA-------DSEA------------------------QAKQQQQ 148 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + ++ D KK++ L+ + D ++ E+ I+I I R F S Sbjct: 149 EAASQDQINDRVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFL 202 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKS 302 P V++++GE+L +I++ GHTD N + NW LS RA + A++++ Sbjct: 203 QPRFKPVIRRVGELLKDVPGIITVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELVRVP 262 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 G + R+ K+ G A + +D + NRR++I +E Sbjct: 263 GFDQQRM-KVVGMASTAPLVPNDSAANRARNRRVEIAIE 300 >gi|313902670|ref|ZP_07836069.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467108|gb|EFR62623.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965] Length = 364 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/315 (21%), Positives = 123/315 (39%), Gaps = 56/315 (17%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YAD +T+L+AFF+VM+ ++ + +A+ TA + + D + Sbjct: 76 WLLTYADLITLLLAFFVVMYAMSEVNAARYQALAASLR---AAFATAGETLIDTEG---- 128 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 +S D + ++ G L + E S Sbjct: 129 -------ISPDARKVLDGLNRDTGQPYPPA-----------LPPAGSPEAPGEGSGEPSG 170 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL--SGLVADN 210 + L S + +PP+S E+ ++R++ L ++++ L +GL Sbjct: 171 EWPGLPGL----PSPGQGAGTAVPPMSAEE------RERMEGLVERVNEALREAGLGGRA 220 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + T G+ I DQ FD + PE +L+++ +LA I + G Sbjct: 221 SAR-----LTERGVAIIFDDQV---FFDLGRAELRPEGRDLLRRLAPILAQVPGTILVEG 272 Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTD P R+ R NW LS RA + + L + + R +G+ R + P Sbjct: 273 HTDNLPIRS-GRYPSNWELSTARATTVVRYLAEQAGLDPRRLAAAGYGEWRPRY---PNT 328 Query: 329 SA-----NRRIDILV 338 SA NRR++I++ Sbjct: 329 SAANRARNRRVEIVL 343 >gi|94500541|ref|ZP_01307072.1| motility protein, MotA family protein [Oceanobacter sp. RED65] gi|94427331|gb|EAT12310.1| motility protein, MotA family protein [Oceanobacter sp. RED65] Length = 336 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 7/123 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 TR G+ I I+D+ N PMF+ SS +L ++ +L ISI GHTD+S N Sbjct: 150 TREGLRIQIVDKTNRPMFNPGSSRLKYYAEDILYEMAPILQAVPNRISITGHTDSSGSAN 209 Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF---AHHRLKIASDPMNSANRRID 335 NW LS RA +A + L +G+ ++I+++ G AH ++ DP + NRRI Sbjct: 210 PWDTGNWELSAGRANAARRALADAGLDSEKIAQVVGMGDKAHFNIE---DPTDPVNRRIA 266 Query: 336 ILV 338 I+V Sbjct: 267 IVV 269 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 DQ II K+V ++ G+WK+ ADF +MA FL++W+IN+++ + +A+ YFN Sbjct: 5 DQQQIIIKRVKKGGHGHHGGAWKVALADFAMAMMALFLILWLINSSNQEEIEAVAGYFN 63 >gi|39935962|ref|NP_948238.1| chemotaxis protein MotB2 [Rhodopseudomonas palustris CGA009] gi|39649816|emb|CAE28338.1| possible chemotaxis protein MotB2 [Rhodopseudomonas palustris CGA009] Length = 326 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K V+FE T G+ + + DQ PMF S++P T ++ ++ L ++ + I GHT Sbjct: 188 KNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPLRATSLRVIIVGHT 247 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 A+ + D LS++RA + +VL + G+ ++ + G P +ANR Sbjct: 248 AATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGEPLFPDAPALAANR 307 Query: 333 RIDI 336 R+ I Sbjct: 308 RVTI 311 >gi|294139895|ref|YP_003555873.1| sodium-driven polar flagellar protein PomB [Shewanella violacea DSS12] gi|293326364|dbj|BAJ01095.1| sodium-driven polar flagellar protein PomB [Shewanella violacea DSS12] Length = 325 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 40/337 (11%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73 + KK + P W +AD M++LM FF+++ + D K I FG Sbjct: 1 MAKKAKCECPPPGAPLWLATFADLMSLLMCFFILLLSFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 74 -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 K++ + I E P PE + I+ +E +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNE-MTEPILEYQAGDDDSAGGVQQ 119 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +Q ++ ++ ++ K K+ K+ +EE SK + A Sbjct: 120 --------QRGEQRGGEASATAQEQDEAKAESKAESESKAKAEEE-------SKAQAAA- 163 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++ + D KK++ L+ + D ++ E+ I+I I R F S P Sbjct: 164 --QENINDQVKKMAMELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFLQP 215 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGV 304 V++++GE+L ++++ GHTD N + NW LS RA + A++++ G Sbjct: 216 RFKPVVRRVGELLRDIPGIVTVSGHTDDMHISNELYSSNWDLSSKRAVAVAHELIKVKGF 275 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 ++R+ K+ G A+ + +D + S NRR++I +E Sbjct: 276 EQNRM-KVVGMANSAPLVDNDSASNRSRNRRVEIAIE 311 >gi|332294873|ref|YP_004436796.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796] gi|332177976|gb|AEE13665.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796] Length = 243 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 6/125 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G LISI+ + +FD + P+ +L KI VL + + GHTD P Sbjct: 122 TERGYLISILTDKI--LFDSGKANLKPDAFPLLTKIAAVLKKIDNEVYVEGHTDNVPIHT 179 Query: 280 IA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDI 336 + NW LS RA S + ++ G+S R+ I+G+A R ++D P NRRIDI Sbjct: 180 VEFPSNWELSAARAASVAKYFIEQGISPSRLV-IAGYADTRPVASNDTPQGRQKNRRIDI 238 Query: 337 LVEDR 341 L+ + Sbjct: 239 LITKK 243 >gi|254255076|ref|ZP_04948393.1| Flagellar motor protein [Burkholderia dolosa AUO158] gi|124899721|gb|EAY71564.1| Flagellar motor protein [Burkholderia dolosa AUO158] Length = 352 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-- 280 G+ + + D + +F++ S++P P +L K+G + A + + + GHTD+ P+R Sbjct: 198 GLRLMLHDSESQGVFERGSAVPAPPFRPLLDKMGALFAQTDSPLLVIGHTDSVPYRKYGL 257 Query: 281 -ARDNWRLSLDRAYSAYQVLM 300 R NW LS DRA SA + L+ Sbjct: 258 GGRSNWHLSADRAMSARRALV 278 >gi|239906259|ref|YP_002952999.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239796124|dbj|BAH75113.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 341 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 78/333 (23%), Positives = 130/333 (39%), Gaps = 38/333 (11%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD--------DDTKKAIEQYFNPFGKNLMTASKGIF 84 W I AD MT+L+ FFL++ ++ D D ++A+ Q P K + + Sbjct: 18 WPISLADMMTLLLCFFLLIVAVSHVDLNRYERVADSMQQAMVQE-KPAPKKKTAETAPVT 76 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D+ PP + S H T + + + + + Q E K Sbjct: 77 DKTAPPPLPFEKPQVRSKVSHTTLSREPAPLYEQPAQGPQAADASKLGEPHPGQPQEPAK 136 Query: 145 NS-LTRDSEKGK--DLCKSTDLEKSINKEENYFLPPLSKEKIL------AMKRKKRLQDL 195 + T+ E K + K + K + + EK +K L D+ Sbjct: 137 AAEPTKPGEPAKTPEAAKPGEQPKGTEPAKADATADATAEKAPKPGEERTGPTRKSLDDI 196 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K++S L D V G+ +++ R FD +S+ P I +L+ I Sbjct: 197 RKELSGKL-----DVTAGAVEVRPRDNGVELNL---RGAAFFDLASAEVKPGGIPLLRDI 248 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 LA + +++ GHTD P + + NW LS RA + L+ GV+ D + ++ G Sbjct: 249 AATLAGTPYKVTVEGHTDNLPMESWLYPSNWELSSARASRVARFLIDHGVARDHL-RVEG 307 Query: 315 FAHHRLKIASD--------PMNSA-NRRIDILV 338 A + +A + P N A NRR+ ILV Sbjct: 308 LADTQ-PVAPNTDPAGRSIPENQARNRRVVILV 339 >gi|304396266|ref|ZP_07378148.1| OmpA/MotB domain protein [Pantoea sp. aB] gi|304356635|gb|EFM21000.1| OmpA/MotB domain protein [Pantoea sp. aB] Length = 313 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT +MAFF+VMW+++ + I YF K +T + D +P Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADYFKTPLKIAITGGQRSSDSTSP 82 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ G+ I IID +N PMF + P +L+ I +L IS+ GHTD Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIAPILNDIPNRISLAGHTDD 198 Query: 275 SPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 F+ + D NW LS DRA ++ + L+ G+ +I ++ G A ++ Sbjct: 199 --FQYASGDKGYSNWELSADRANASRRELVIGGLDSGKILRVLGMADTMSLKNRGGNDAV 256 Query: 331 NRRIDILV 338 NRRI +LV Sbjct: 257 NRRISLLV 264 >gi|323703350|ref|ZP_08115000.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531713|gb|EGB21602.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574] Length = 263 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SG 303 P + ++ KIG +L + I + GHTD P R NW LSL RA S L++ SG Sbjct: 142 PSSTQIVDKIGAILHQTNNYIRVEGHTDNLPIRTSKFPSNWELSLARAASVVHRLIEYSG 201 Query: 304 VSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 + +R+S +G+ +R + SD NRR+DI+V Sbjct: 202 IPAERLSA-TGYGEYRPRRPNDSDANRQQNRRVDIVV 237 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 23/118 (19%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +KK+ + +N W I Y+D +T+L+ FF+VM+ ++ D + AI Sbjct: 1 MKKRGGGEPEKDNKERWLITYSDLITLLLIFFVVMYTLSKIDANKYYAIASSL----AKT 56 Query: 77 MTASKGIFD----------------EQNPPERSSQ---NKIDLSIDEHITKNSVDLKI 115 M S+ I D EQ PE Q I I ++I KN + K+ Sbjct: 57 MGGSQSIMDNAGAAIVPGAAREKSNEQGMPESVEQRNMESIKRQIQDYIDKNGLSGKV 114 >gi|156973487|ref|YP_001444394.1| flagellar motor protein MotB [Vibrio harveyi ATCC BAA-1116] gi|156525081|gb|ABU70167.1| hypothetical protein VIBHAR_01177 [Vibrio harveyi ATCC BAA-1116] Length = 314 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 73/339 (21%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 7 CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 66 Query: 80 --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 KG I ++ P R ID+ + + IT+ +++ G +++ +R + + Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDQGKLTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE---KSINKEENYFLPPLSKEKILAMKRKK 190 + + S H S D ++ + S ++E +SI K A++R+ Sbjct: 127 GQSPETSTHNNQSAESDMQQQQSEQTSQEMETLMESIKK---------------ALERE- 170 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 I +G + E G I +I R F + S+ P+ Sbjct: 171 --------------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++++I E++ ++ + GHTD P + R NW LS RA S Q + Sbjct: 209 LVRQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQ----------EM 258 Query: 310 SKISGFAHHRLKIA------------SDPMNSANRRIDI 336 K+ GF+H RL++ SD + NRR++I Sbjct: 259 EKVRGFSHQRLRVRGMADTEPLAPNDSDANRALNRRVEI 297 >gi|114563951|ref|YP_751465.1| flagellar motor protein MotB [Shewanella frigidimarina NCIMB 400] gi|114335244|gb|ABI72626.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 308 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A ++ + D KK++ L+ + D ++ E+ I+I I R F S Sbjct: 143 AASSQENINDQVKKMAEKLNEEIVDGAIE---IESLGQQIIIRI---REKGSFASGSGFL 196 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKS 302 P+ +++ IGE+L +I++ GHTD + N + NW LS RA + A+++ S Sbjct: 197 QPKFKPIVRSIGELLKDVPGIITVSGHTDGADINNELYSSNWELSSQRAVAVAHELRRVS 256 Query: 303 GVSEDRISKISGFAHHRLKIASDP-MNSA-NRRIDILVE 339 G E R+ K+ G A +R +A+D N A NRR++I +E Sbjct: 257 GFDESRM-KVVGEASNRPLVANDSNENQARNRRVEISIE 294 >gi|206889281|ref|YP_002248656.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741219|gb|ACI20276.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 213 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 11/150 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +D K I L L+ D + G+ ++ GI+I++ D + +F S+ PE+ L Sbjct: 69 EDRNKAIIEDLRKLLND--ISGINIKSDARGIVITLPD---SLLFSSGSAELKPESTDAL 123 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +I E L ++I GHTD P + + + NW LS RA S L++ G+S DR Sbjct: 124 TRIAEKLKELPGKVAIEGHTDNIPISSSVYKSNWELSAARASSVLHFLLQRGLSPDRF-L 182 Query: 312 ISGFAHHRLKIA---SDPMNSANRRIDILV 338 I+G+ ++ +A +D + NRR+++++ Sbjct: 183 IAGYGEYK-PVATNDTDEGRAKNRRVELII 211 >gi|71906384|ref|YP_283971.1| flagellar motor protein MotD [Dechloromonas aromatica RCB] gi|71846005|gb|AAZ45501.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 257 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++++++++++A I L LVA V+ L ET+R G+ I I D + +F + Sbjct: 94 IEQRQKMKNMAGDIMQALQPLVAQGKVR--LLETSR-GVTIEIND---SILFPAGQAKLQ 147 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304 +I + I +VLA S I+I GHTD P NW LS RA + ++ GV Sbjct: 148 SASISAMLAIAQVLAASDFPITIEGHTDNVPIATAQFPSNWELSAMRATTVLRLFNDGGV 207 Query: 305 SEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILVE 339 +R++ I G+ R L+ + A NRR+ IL++ Sbjct: 208 GAERLTAI-GYGETRPLETNTTVEGRARNRRVSILID 243 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 W + YADF+T+L AFF+VM+ I++ ++ K + KN+ G Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSNSLTNAFKNVTGQPGG 65 >gi|172062649|ref|YP_001810300.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171995166|gb|ACB66084.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 228 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP+ VL +I L+ H+T I + GHTD++P N + NW LS RA Sbjct: 121 LFNVGDARLLPDATPVLSEIARALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAG 180 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 S + L GV+ R++ I G A + +ASD P + NRR+ I V Sbjct: 181 SVVRYLADRGVAPHRLAAI-GRADTQPLVASDDAPARARNRRVTIFV 226 >gi|182412224|ref|YP_001817290.1| OmpA/MotB domain-containing protein [Opitutus terrae PB90-1] gi|177839438|gb|ACB73690.1| OmpA/MotB domain protein [Opitutus terrae PB90-1] Length = 266 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 2/51 (3%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTAS 80 G+WK+ YADF+T +MA F+V+W I+A D A QYF NPF ++ AS Sbjct: 12 GAWKVAYADFVTAMMALFMVLW-ISAQDQKILIATSQYFQNPFQAPMLAAS 61 >gi|316932465|ref|YP_004107447.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600179|gb|ADU42714.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 341 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIARDNWRL 287 FD ++ LPE L K+ + L A V+ + GHTD P R NW L Sbjct: 227 FFDTGQALLLPEGRAELDKVADALKELDKQIPAELPWVVRVDGHTDRRPITGAFRSNWEL 286 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILVE 339 S RA S Q LM GV R+ +GFA + P+++A NRRI++ + Sbjct: 287 SSARAISVVQYLMSRGVPAQRLVA-AGFAEFQ------PLDTADTEDAYRRNRRIELKLT 339 Query: 340 DR 341 +R Sbjct: 340 ER 341 >gi|332307428|ref|YP_004435279.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174757|gb|AEE24011.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 305 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 84/321 (26%), Positives = 136/321 (42%), Gaps = 41/321 (12%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 P L +W +AD M++LM FF+++ + D + ++ K + + K F Sbjct: 10 PAGLPAWMGTFADLMSLLMCFFVLLLSFSEMD------VLKF-----KQIAGSMKFAFGV 58 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 QN E K I D T Q++ + + + + + ++ S + Sbjct: 59 QNKIEVKDIPKGTSVIAMEFRPGRPDPTPIETIQQQTIEMTQQMLEFQAGNEDSAGGRQK 118 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 R +KG + T E+S K S+E++ A + KK Q L K+I L G Sbjct: 119 -QRGEQKG-GAAQQTASEQSSAKTTA------SQEEV-AKQMKKVAQQLEKEI---LDGA 166 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + E+ ++I I R F S+ P+ +L+KIG +LA I Sbjct: 167 IE--------MESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTLLADMPGDI 215 Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324 I GH+D+ N + R NW LS RA + + L K+ G E R++ I G A + Sbjct: 216 EISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRMAVI-GKADTAPLLGE 274 Query: 325 D--PMNSANRRIDILVEDRQG 343 D S NRR++I V +QG Sbjct: 275 DDAQARSRNRRVEIAV--KQG 293 >gi|308187234|ref|YP_003931365.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans C9-1] gi|308057744|gb|ADO09916.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans C9-1] Length = 313 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 GSWKI YADFMT +MAFF+VMW+++ + I YF K +T D +P Sbjct: 24 GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADYFKTPLKVAITGGARSSDSDSP 82 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 ++ G+ I IID +N PMF + P +L+ I +L IS+ GHTD Sbjct: 139 LIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIAPILNDIPNRISLAGHTDD 198 Query: 275 SPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNS 329 F+ D NW LS DRA ++ + L+ G+ ++ ++ G A RLK ++ Sbjct: 199 --FQYAGGDKGYSNWELSTDRANASRRELVMGGLDSGKVLRVLGMADTMRLKNRGG-NDA 255 Query: 330 ANRRIDILV 338 NRRI +LV Sbjct: 256 VNRRISLLV 264 >gi|168703394|ref|ZP_02735671.1| OmpA/MotB domain protein [Gemmata obscuriglobus UQM 2246] Length = 183 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDE 86 GSWK+ YADF+T +MAFFLVMW I A D ++++ YF +P G + S G E Sbjct: 6 GSWKVAYADFVTAMMAFFLVMW-IGAQDVKVRQSVANYFIDPAGVSKKPVSDGAVLE 61 >gi|77361278|ref|YP_340853.1| flagellar motor protein MotB [Pseudoalteromonas haloplanktis TAC125] gi|76876189|emb|CAI87411.1| sodium-driven polar flagellar protein [Pseudoalteromonas haloplanktis TAC125] Length = 306 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 37/314 (11%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 P L +W +AD M++LM FF+++ + D + ++ K + + K F Sbjct: 10 PPGLPAWMGTFADLMSLLMCFFVLLLAFSEMD------VLKF-----KQIAGSMKFAFGV 58 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 QN E K I T + T Q++ + + + + + + S + Sbjct: 59 QNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAGGRQE 118 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 D G+ +S +KE+ + E+ ++ +++ DL KKI+ L Sbjct: 119 QRGDKRGGES--------RSTSKEQ-------ASEQAISAADQQQTNDLVKKIAQQLEKQ 163 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + D ++ E+ I+I I R F S+ P+ ++Q+IG +L I Sbjct: 164 IIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQEIGVLLKDVPGEI 217 Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS 324 ++ GHTD N + +NW LS RA + L K G ++R+ + G A R + + Sbjct: 218 TVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQKVVGFDKNRM-MVVGRAETRPLVPN 276 Query: 325 DPMNS--ANRRIDI 336 D NRR++I Sbjct: 277 DSNEDRRRNRRVEI 290 >gi|213025961|ref|ZP_03340408.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 65 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 23/39 (58%), Positives = 28/39 (71%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 14 GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF 52 >gi|239996641|ref|ZP_04717165.1| flagellar motor protein MotB [Alteromonas macleodii ATCC 27126] Length = 309 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 53/322 (16%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 P L +W +AD M++LM FF+++ + D K I M + G+ Sbjct: 11 PEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQI--------AGSMKFAFGV--- 59 Query: 87 QNPPERSSQNKIDLS-IDEHITKNSVDLKIGSTNQ------KKQYQRLENNIFYLSNSQQ 139 QNKI++ I + + +++ + G + ++Q + + + Sbjct: 60 --------QNKIEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAGNE 111 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 R ++G + T E S + E++ + ++ +L KK+ Sbjct: 112 DSAGGRQKQRGEQRGGQ-SQQTATESSSSAEQST--------------DQSQMAELMKKV 156 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L + D V+ E+ + I I R F S+ P+ VL+KIG +L Sbjct: 157 AQQLEKQILDGSVE---MESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRKIGTLL 210 Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 A I I GH+D N + R NW LS RA + + + + G E R+S + G A Sbjct: 211 ADVPGEIEISGHSDGQHIANELYRSNWDLSAQRAVAVAEAMRTAPGFDESRMS-VVGKAD 269 Query: 318 HR--LKIASDPMNSA-NRRIDI 336 ++ A+ P + A NRR++I Sbjct: 270 TDPIVENATSPSDRAQNRRVEI 291 >gi|225871803|ref|YP_002753257.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] gi|225791684|gb|ACO31774.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] Length = 262 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A++ ++ L+ + +++ L+ +A + V + G++IS+ R +D S+ P Sbjct: 81 ALQTQENLEKMREQLQKKLAAQIAAHQVA---LQLGPDGLVISL---REAGFYDSGSATP 134 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKS- 302 P ++ + I L + I GHTD P D NW LS RA + ++L+++ Sbjct: 135 KPSSMGAVGIIAHELYQVPYALRIEGHTDNVPIHTAKFDSNWELSTARATTMARLLIENF 194 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 GV+ R+S +G+A + IAS+ + NRR+DI+V Sbjct: 195 GVAPQRLSA-AGYAQYH-PIASNATAAGRAENRRVDIIV 231 >gi|223936109|ref|ZP_03628023.1| OmpA/MotB domain protein [bacterium Ellin514] gi|223895331|gb|EEF61778.1| OmpA/MotB domain protein [bacterium Ellin514] Length = 280 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 14/156 (8%) Query: 192 LQDLAKKISSTLSGLV----ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 LQ +K+ T GL +D + V + + ++I+D+ MFD + P+ Sbjct: 93 LQKEKEKVGQTAKGLEDEMRSDLESRDVTISNLKGKLTVNILDRV---MFDSGEAAVKPD 149 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVS 305 VL+KI +LA E+ I + GHTD P RN NW LS RA +A + K+GV Sbjct: 150 GESVLRKIATILAGHPELKIQVIGHTDNVPIRNRFASNWELSAARAIAAVHFITEKAGVD 209 Query: 306 EDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 R+ +G+ +R IA + NRRI I + Sbjct: 210 PRRVGA-AGYGEYR-PIADNSTAEGRARNRRIAITI 243 >gi|110677964|ref|YP_680971.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh 114] gi|109454080|gb|ABG30285.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh 114] Length = 279 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 V +N ++ ++ T G++I + P+F+ +S +P P +++ + V +T I Sbjct: 146 VMENALEHIVTRITDEGLVIELFALDGLPLFEPNSDVPTPLMTQLVELVASVAFAATNDI 205 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 +I H + P W S DRA +L ++G+ +R+ +++G A R +P Sbjct: 206 AIGAHVPSRPIVVAQNPVWDASTDRATRTRLMLQENGLEPERMQRVTGHA-DREPAHLNP 264 Query: 327 MNSANRRIDILV 338 M + N R++I++ Sbjct: 265 MATRNSRVEIVL 276 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 31/40 (77%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +WK+ YADF+T +MAFF++MW++NAT + ++ + YF P Sbjct: 27 AWKVAYADFVTAMMAFFMMMWLLNATTEQQRQGLADYFAP 66 >gi|153835783|ref|ZP_01988450.1| PomB [Vibrio harveyi HY01] gi|148867501|gb|EDL66863.1| PomB [Vibrio harveyi HY01] Length = 314 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 73/339 (21%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 7 CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 66 Query: 80 --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 KG I ++ P R ID+ + + IT+ +++ G +++ +R + + Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGVSDRAGGTKRDQGKLTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE---KSINKEENYFLPPLSKEKILAMKRKK 190 + + S H S D ++ + S ++E +SI K A++R+ Sbjct: 127 GQSPETSTHNNQSAESDMQQQQSEQTSQEMETLMESIKK---------------ALERE- 170 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 I +G + E G I +I R F + S+ P+ Sbjct: 171 --------------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++++I E++ ++ + GHTD P + R NW LS RA S Q + Sbjct: 209 LVRQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQ----------EM 258 Query: 310 SKISGFAHHRLKIA------------SDPMNSANRRIDI 336 K+ GF+H RL++ SD + NRR++I Sbjct: 259 EKVRGFSHQRLRVRGMADTEPLAPNDSDANRALNRRVEI 297 >gi|115360213|ref|YP_777351.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115285501|gb|ABI91017.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 228 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP+ VL +I L+ H+T I + GHTD++P N + NW LS RA Sbjct: 121 LFNVGDARLLPDATPVLSEIARALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAG 180 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 S + L + GV+ R++ I G A + +A D P + NRR+ I V Sbjct: 181 SVVRYLAERGVAPHRLAAI-GRADTQPLVAGDDAPARARNRRVTIFV 226 >gi|109897648|ref|YP_660903.1| flagellar motor protein MotB [Pseudoalteromonas atlantica T6c] gi|109699929|gb|ABG39849.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 305 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 82/329 (24%), Positives = 134/329 (40%), Gaps = 57/329 (17%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KNLMT 78 P L +W +AD M++LM FF+++ + D K I FG K++ Sbjct: 10 PAGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPK 69 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + I E P + D + E I + ++++ T Q ++Q + Q Sbjct: 70 GTSVIAMEFRP------GRPDPTPIETIQQQTIEM----TQQMLEFQAGNEDSAGGRQKQ 119 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + E K + + + K+T ++ NK+ KK Q L K+ Sbjct: 120 RGEQ-KGGAAQQTASEQSSAKTTASQEEANKQ-----------------MKKVAQQLEKE 161 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I L G + E+ ++I I R F S+ P+ +L+KIG + Sbjct: 162 I---LDGAIE--------MESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTL 207 Query: 259 LAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 LA I I GH+D+ N + R NW LS RA + + L K+ G E R++ I G A Sbjct: 208 LADMPGDIEISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRMAVI-GKA 266 Query: 317 HHRLKIASD--PMNSANRRIDILVEDRQG 343 + D S NRR++I + +QG Sbjct: 267 DTAPLLGEDDAQARSRNRRVEIAI--KQG 293 >gi|224368748|ref|YP_002602909.1| MotB1 [Desulfobacterium autotrophicum HRM2] gi|223691464|gb|ACN14747.1| MotB1 [Desulfobacterium autotrophicum HRM2] Length = 269 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 10/148 (6%) Query: 197 KKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I+S + ++ N + G++ + TG++I++ D +F +I + +L K+ Sbjct: 113 REIASEVREMILFNKLGGLVNVSESETGVVITMSDLL---LFSAGEAILSEKGADILNKV 169 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 VLA + ++GHTDASP + R NW LS RA + ++L+ SG+ IS Sbjct: 170 TAVLAQLAYHVKVKGHTDASPI-STGRYPSNWELSASRAAAVVKLLVASGLDPSLISA-E 227 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVE 339 G+A +R +D + NRR++I+ E Sbjct: 228 GYAQYRPVATNDTEKGRARNRRVEIVYE 255 >gi|183221220|ref|YP_001839216.1| hypothetical protein LEPBI_I1834 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911311|ref|YP_001962866.1| endoflagellar motor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775987|gb|ABZ94288.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779642|gb|ABZ97940.1| Putative outer membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 354 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 6/158 (3%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L ++K+ L+ L+++ L + + + ++I+I D+ + FD SS Sbjct: 187 LTKEQKRELERLSEQTKEFEEKLAKEITSGQIRLKRFHNKLIINIDDKIS---FDSGSSE 243 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + ++KI ++LA E I + GHTD P + R+NW LS +RA S + ++++ Sbjct: 244 LKPAILPAIEKIRDILASYPENYIVVEGHTDNVPIKTKFRNNWHLSSERALSVLEFILQN 303 Query: 303 GVSEDRISKISGFAHHRLKIA-SDPMNSA-NRRIDILV 338 + +G+ H+ + S N A NRR+DI+V Sbjct: 304 KNLNPKNFSSAGYGEHQPIVPNSTKENKALNRRVDIVV 341 >gi|330861238|emb|CBX71489.1| hypothetical protein YEW_CQ10840 [Yersinia enterocolitica W22703] Length = 239 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 8/97 (8%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ I +L IS+ GHTD P+ + R NW LS DRA ++ + L+ G+ E + Sbjct: 4 ILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDEGK 63 Query: 309 ISKISGFAHH-RLK--IASDPMNSANRRIDILVEDRQ 342 + ++ G A RLK + DP+ NRRI ILV ++Q Sbjct: 64 VLRVVGMASTMRLKEQASDDPV---NRRISILVLNKQ 97 >gi|91781366|ref|YP_556573.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans LB400] gi|91694026|gb|ABE37223.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans LB400] Length = 230 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LPE+ VLQ+I VL + I + GHTD+ P + NW LS RA Sbjct: 123 LFNSGDARLLPESFAVLQQIAAVLRDRAKNNILVEGHTDSLPISTAKYESNWELSSARAG 182 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVE 339 + + G+ R++ I + L I +D + N+ANRR+ ILVE Sbjct: 183 AVVRFFADRGIEGHRMAAIGRADNFPLIIGNDAVANAANRRVTILVE 229 >gi|289667244|ref|ZP_06488319.1| flagellar motor protein MotD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 324 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 GS+N+ Q L +Q SL D Sbjct: 59 -------------------------GSSNKASPVQ--------LGKTQ-------SLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 HDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TL+ L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALASNARTTLSTLASVLRD 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P NW LS RA S + GV+ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + +++ +ANRR+ +++ Sbjct: 252 RADNSTEAGRNANRRVVLII 271 >gi|307824498|ref|ZP_07654723.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307734482|gb|EFO05334.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 265 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +K +K+L ++ + L+ + DN+V + I + + N+ M S L Sbjct: 86 LKERKQLSQVSGQFEQVLAPFIQDNLVS-----VKKNDYWIEL--EMNSEMLFLSGEAEL 138 Query: 246 PE-TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 + I VLQKI EV+ +++I GHTD P NI R NW LS RA S +K G Sbjct: 139 SKKAIPVLQKIVEVINPLPNMVNIEGHTDNIPIDNIKFRSNWDLSSARATSVVHEFVKEG 198 Query: 304 VSEDRISKISGFAHHRL 320 ++ R+S I H + Sbjct: 199 INPPRLSAIGYGEFHPI 215 >gi|220905442|ref|YP_002480754.1| OmpA/MotB domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869741|gb|ACL50076.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 235 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 30/40 (75%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 G+WK+ YADF+T +MAFFL++W+++ +T+ + YF+ Sbjct: 3 GAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFS 42 >gi|291280094|ref|YP_003496929.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1] gi|290754796|dbj|BAI81173.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1] Length = 249 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T GI + I+D + +F S+ LP I +L+K+ V+ + I + GHTD P Sbjct: 111 TDKGISVRIMD---SVLFAPGSAEILPSAIPILEKLAAVMRDTPYNILVEGHTDDIPIST 167 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336 NW LS RA + + L+ GV +++S +H L P N A NRR++I Sbjct: 168 PKYPSNWELSTARAVAVVKFLISRGVKPEKLSAAGYAQYHPLVPNITPENRAKNRRVEI 226 >gi|289548706|ref|YP_003473694.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484] gi|289182323|gb|ADC89567.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484] Length = 243 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 8/113 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAY 293 +FD S+ P+ +L KI E+L + + GHTD P + R NW LS RA Sbjct: 126 LFDSGSADIKPQFYPILDKIAELLNSIPNPVEVEGHTDNIPI-STGRFPSNWELSTARAS 184 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQG 343 S + + GVS DR+ K SG+A R IAS+ NRR++I++ + +G Sbjct: 185 SVVRYFIAKGVSPDRL-KASGYADTR-PIASNATPEGREQNRRVEIVIINIKG 235 >gi|163735541|ref|ZP_02142973.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149] gi|161391161|gb|EDQ15498.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149] Length = 279 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 V +N ++ ++ T G++I + P+F +S P P +++ + V +T I Sbjct: 146 VMENALEHIVTRITDEGLVIELFALDGQPLFQPNSDDPTPLMTQLVELVASVAFAATNNI 205 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 +I H + P W +S DRA +L ++G+ +R+ +++G A R + +P Sbjct: 206 AIGAHVPSRPIVVAQNPVWDVSTDRATRTRLMLQENGLEPERMHRVTGHA-DREPVHLNP 264 Query: 327 MNSANRRIDILV 338 M + N R++I++ Sbjct: 265 MATRNSRVEIVL 276 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 30/40 (75%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 +WK+ YADF+T +MAFF++MW++NAT + + + YF P Sbjct: 27 AWKVAYADFVTAMMAFFMMMWLLNATTEQQRAGLADYFAP 66 >gi|89895779|ref|YP_519266.1| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51] gi|89335227|dbj|BAE84822.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 275 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + I L ADN ++ L + G++ISI D T +F+ +++ P+ +L KI Sbjct: 109 ETIKQKLDKFAADNGIETKLVSSIEERGLVISIQD---TLLFESGAAVITPKAREILDKI 165 Query: 256 GEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VLA + I + GHTD P N NW LS+ RA + + M+ + +++S +G Sbjct: 166 NNVLASAPNYIKVEGHTDNLPINTNRFPSNWELSVLRATNVVHI-MQEIIPAEQLSA-TG 223 Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338 + +R A+D + NRR+D+++ Sbjct: 224 YGEYRPLAANDTEAGRARNRRVDLVI 249 >gi|329904710|ref|ZP_08273911.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium IMCC9480] gi|327547854|gb|EGF32612.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium IMCC9480] Length = 270 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 176 PPLSKEKILAMKRKKR-LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P +++I ++R+K + +A+ I + LS L++ V+ + +T+R G+ I I + Sbjct: 92 PAAERQRIELLRREKESMTSIARDILNVLSPLISSGKVR--VTQTSR-GVSIEI---NAS 145 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAY 293 +F + E+ L I +VL+ T I I GHTD P N NW LS RA Sbjct: 146 VLFAPGEASLTNESGAALSAIAQVLSQDTHAIQIEGHTDNLPIGNATFPSNWELSSVRAS 205 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 S ++ +G++E+R++ + ++ + P NRR+++L+ Sbjct: 206 SVVRLFSNNGIAENRLTAVGHGSNKPVGSNDTPEGRVRNRRVEVLI 251 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 DD P++ W I YADF+T+L AFF+VM+ I++ ++ + + Sbjct: 20 DDAPSH-DRWLISYADFITLLFAFFVVMYAISSVNNGKYRVL 60 >gi|74317269|ref|YP_315009.1| flagellar motor protein MotD [Thiobacillus denitrificans ATCC 25259] gi|74056764|gb|AAZ97204.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans ATCC 25259] Length = 263 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 26/177 (14%) Query: 175 LPPLSKEKIL----AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 LPP +++ L A++ + + ++A + + LV + V+ +R G+ I I Sbjct: 83 LPPEVRQRSLRQQQAIEEQAHMTEVASNLLDVMGPLVKEGKVR---VTQSRRGVSIEI-- 137 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSL 289 N +F+ + PE++ VL+ + L H I I GHTD P N + NW LS Sbjct: 138 NANV-LFEPGRAELAPESLAVLRAVAAQLRHEPFNIEITGHTDIVPISNSVFASNWELSA 196 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338 RA S ++L G++ R+ I + AS P+ S NRR+++++ Sbjct: 197 VRATSVVRLLADGGIAPSRLFAIG-------REASQPIASNGTAEGRARNRRVELMI 246 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK 74 ID N W + YADF+T+L AFF+VM+ ++A ++ + + FGK Sbjct: 16 IDSDHENHDRWLVSYADFITLLFAFFVVMYAVSAVNEGKYRVLANALGGAFGK 68 >gi|255527289|ref|ZP_05394169.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7] gi|255509027|gb|EET85387.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7] Length = 182 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V E G+++S+ R+T F+ + + + L +IG++L + I GHTD Sbjct: 14 VTTEVDERGLVVSL---RDTLFFETGKAEVIAASQGKLVEIGKILNQLDNTMRIEGHTDN 70 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSAN 331 P N DNW+LS RA + ++L+ +GV ++S ++ + +R L +++ + N Sbjct: 71 VPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKLSSVA-YGEYRPVLDNSTEDGRARN 129 Query: 332 RRIDILV 338 RR+DI+V Sbjct: 130 RRVDIIV 136 >gi|78484731|ref|YP_390656.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78363017|gb|ABB40982.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] Length = 248 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 ++ P G+W+I AD MT LM FFLVMW+ + D D +KA + G S Sbjct: 8 EECPEEGGAWEIALADLMTTLMVFFLVMWLTSIVDPDKRKAFVEALVGEGAGGENISA-- 65 Query: 84 FDEQNPPERSSQNKIDL 100 DE N P S K DL Sbjct: 66 -DETNTPREPSIMKEDL 81 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+++GE LA + ISI G+TD+ P N+ NW LS RA + + + GV ++ ++ Sbjct: 135 LEQLGETLAGRDQEISITGYTDSIPIENLQFPSNWELSAARAATVARTFIYMGVDKNLVT 194 Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338 ISG A + A+ S NRR+ ILV Sbjct: 195 -ISGKADNDAVAPNATAYGRSLNRRVIILV 223 >gi|189426486|ref|YP_001953663.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] gi|189422745|gb|ACD97143.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] Length = 280 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 M +K +++A I + L V V T+ G++IS+ + FD S+ Sbjct: 113 MAGEKEFREMASAIEAYL---VKQGFQNKVALSITQRGLVISL---KEAGFFDSGSAKLK 166 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-G 303 E+I L+ I + L+ + GHTD+ P R+ R NW LS RA + L+ S G Sbjct: 167 SESIQTLRGIADTLSRYANRFRVEGHTDSMPIRSTEFRSNWELSTARATNVIHFLIDSAG 226 Query: 304 VSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 S + +S + G+ + + ++ + NRR+DI++ Sbjct: 227 FSPESLSAV-GYGEFQPVVDNSTAEQRAKNRRVDIVL 262 >gi|21231338|ref|NP_637255.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768610|ref|YP_243372.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris str. 8004] gi|21112997|gb|AAM41179.1| MotB protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573942|gb|AAY49352.1| MotB protein [Xanthomonas campestris pv. campestris str. 8004] Length = 324 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 75/319 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L TA G +P Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTTAFGGSSKAASP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 L N+Q SL D Sbjct: 67 ----------------------------------------VQLGNTQ-------SLGADY 79 Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202 ++ + + S + LP P+S + R +R D +A++++ T Sbjct: 80 DRPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVAQQLNKT 139 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS L+ ++ T R L ++ + +F S++ L + VL + Sbjct: 140 LSPLIDKQLI------TIRRRDLWIEVEINSDILFVTGSALLAGSARGTLSTLAAVLRDA 193 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD P NW LS RA S + GV+ R++ + G+ R + Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GYGEFRAR 252 Query: 322 I--ASDPMNSANRRIDILV 338 +++ +ANRR+ +++ Sbjct: 253 ADNSTEAGRNANRRVVLII 271 >gi|325916150|ref|ZP_08178436.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] gi|325537641|gb|EGD09351.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] Length = 324 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG + Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGS--------------- 60 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + N+ +++G T SL D Sbjct: 61 ----------------STNASPVQLGKT--------------------------QSLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TLS L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLSPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSATLAGGARGTLSTLASVLRD 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P + NW LS RA S + G++ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATVQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + ++ +ANRR+ +++ Sbjct: 252 RADNTTEAGRNANRRVVLII 271 >gi|188991572|ref|YP_001903582.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris str. B100] gi|167733332|emb|CAP51531.1| motB1 [Xanthomonas campestris pv. campestris] Length = 324 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 75/319 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L TA G +P Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTTAFGGSSKAASP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 L N+Q SL D Sbjct: 67 ----------------------------------------VQLGNTQ-------SLGADY 79 Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202 ++ + + S + LP P+S + R +R D +A++++ T Sbjct: 80 DRPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVAQQLNKT 139 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS L+ ++ T R L ++ + +F S++ L + VL + Sbjct: 140 LSPLIDKQLI------TIRRRDLWIEVEINSDILFVTGSALLAGSARGTLSTLAAVLRDA 193 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD P NW LS RA S + GV+ R++ + G+ R + Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GYGEFRAR 252 Query: 322 I--ASDPMNSANRRIDILV 338 +++ +ANRR+ +++ Sbjct: 253 ADNSTEAGRNANRRVVLII 271 >gi|303325924|ref|ZP_07356367.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3] gi|302863840|gb|EFL86771.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3] Length = 235 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 29/39 (74%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +WK+ YADF+T +MAFFL++W++N +T+ + YF+ Sbjct: 4 AWKVAYADFVTAMMAFFLLLWVLNMVPPETRAGLAAYFS 42 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 15/154 (9%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A+ +K + +A + + SG+ AD++ G+ + + + MF S Sbjct: 83 AIAQKIKQMLMADAVPQSSSGISADDV-----------GVQLRV---NSDVMFKAGSVDF 128 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 LPE VL + ++L + +RGH D++ R W LS RA + L GV Sbjct: 129 LPEGEKVLGSVLQILKEYNLYLVVRGHADSTEARPPYASAWELSGARAAAVLHYLADHGV 188 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA-NRRIDIL 337 R+ ++ LK D + A NRR++ Sbjct: 189 KPTRLRGVAYGDTRPLKPGIDEESRAVNRRVEFF 222 >gi|152995178|ref|YP_001340013.1| flagellar motor protein MotB [Marinomonas sp. MWYL1] gi|150836102|gb|ABR70078.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 330 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/320 (23%), Positives = 133/320 (41%), Gaps = 53/320 (16%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 L ++ +AD M++LM FF+++ ++ + D K F +L Sbjct: 15 GLPAYMGTFADLMSLLMCFFVLL--LSFAEMDVLK-----FKQLAGSL------------ 55 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 K+ + + +S+ + Q+ R E + +N+L Sbjct: 56 --------KVAFGVQREVEADSIPMGTSVIAQEFSPGRPEPTPINEVKQKADSTPENTL- 106 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST------ 202 + +CK D E + ++ N P + + + K D KKI T Sbjct: 107 ------EVICKPGDAE--LKEQSNSGSP----APVTFVDKSKADLDKEKKIQETESNAQM 154 Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 ++ ++ + + KG V ET I I I DQ + F+ S+ + I V+ I +VL Sbjct: 155 IASVMREEVSKGTVEIETQEQTITIRIKDQGS---FESGSAELNYDFIPVIDLIRDVLVG 211 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 IS+ GHTD P + R NW+LS RA S + L +G + ++G+A R Sbjct: 212 IQGTISVEGHTDNVPIASSRFRSNWQLSSARAISVAEELFSTGQLDQGRFAVTGYADTRP 271 Query: 321 KIASD-PMNSA-NRRIDILV 338 + +D P + A NRR++I++ Sbjct: 272 LVPNDTPAHRATNRRVEIII 291 >gi|294624200|ref|ZP_06702921.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665070|ref|ZP_06730375.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601500|gb|EFF45516.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605151|gb|EFF48497.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 324 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 GS+N+ Q L +Q SL D Sbjct: 59 -------------------------GSSNKASPVQ--------LGKTQ-------SLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TL+ L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLASVLRE 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P NW LS RA S + G++ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + +++ +ANRR+ +++ Sbjct: 252 RADNSTEAGRNANRRVVLII 271 >gi|21242652|ref|NP_642234.1| flagellar motor protein MotD [Xanthomonas axonopodis pv. citri str. 306] gi|21108121|gb|AAM36770.1| MotB protein [Xanthomonas axonopodis pv. citri str. 306] Length = 324 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 GS+N+ Q L +Q SL D Sbjct: 59 -------------------------GSSNKASPVQ--------LGKTQ-------SLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TL+ L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLAAVLRE 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P NW LS RA S + G++ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + +++ +ANRR+ +++ Sbjct: 252 RADNSTEAGRNANRRVVLII 271 >gi|39933998|ref|NP_946274.1| hypothetical protein RPA0921 [Rhodopseudomonas palustris CGA009] gi|192289418|ref|YP_001990023.1| hypothetical protein Rpal_0991 [Rhodopseudomonas palustris TIE-1] gi|39647845|emb|CAE26365.1| possible flagellar motor protein MotB [Rhodopseudomonas palustris CGA009] gi|192283167|gb|ACE99547.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 341 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 11/116 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIARDNWRL 287 FD ++ LPE L K+ + L A V+ + GHTD P + NW L Sbjct: 227 FFDTGQALLLPEGRAELDKVADALKELDKKIPAELPWVVRVDGHTDKRPITGSFKSNWEL 286 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341 S RA S Q LM GV R+ +GFA + L A +D NRRI++ + +R Sbjct: 287 SSARAISVVQYLMSRGVPAQRLVA-AGFAEFQPLDTADTDDAYKRNRRIELKLTER 341 >gi|269796387|ref|YP_003315842.1| flagellar motor protein [Sanguibacter keddieii DSM 10542] gi|269098572|gb|ACZ23008.1| flagellar motor protein [Sanguibacter keddieii DSM 10542] Length = 295 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 126/320 (39%), Gaps = 83/320 (25%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W + YAD MTVL+A F+V++ I+ D D ++++ FN ++++ G+ + N Sbjct: 24 WLVSYADMMTVLVALFIVLYAISQVDEVKYDQLRQSLAAGFNAPQVSILSDGAGVLTD-N 82 Query: 89 PPER---SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 P E + I ++DE + + D G+ + + Y S ++ +E Sbjct: 83 PTEAVVPAVDKIIPSTVDESTSGDGGD-STGAGDAASPADIAAARVEYQSFAELAEKIDT 141 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 +L +G ++ + +R G Sbjct: 142 ALAAGGMEG----------------------------VVQFRIDER-------------G 160 Query: 206 LVADNIVKGVLFETTRTGILI----SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LV I V F + + +L +++D TP +PLP Sbjct: 161 LVIGMITDEVFF-ASESAVLTPTSQAVVDTM-TPFM-----LPLPNE------------- 200 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320 ISI GH D+ P A NW LS DRA + ++++ G+ RIS + G+ R Sbjct: 201 ----ISIEGHADSVPTARYA-SNWELSSDRATQVLRRMVEADGMPPTRISAV-GYGDSRP 254 Query: 321 KIASDPMN--SANRRIDILV 338 ++ +ANRR+D++V Sbjct: 255 LQPNETAEGLTANRRVDLVV 274 >gi|308048595|ref|YP_003912161.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307630785|gb|ADN75087.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 314 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 76/327 (23%), Positives = 130/327 (39%), Gaps = 63/327 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KNLMTASKGI 83 +W +AD T+LM FF+++ + D K I FG K++ + I Sbjct: 16 AWMATFADLATLLMCFFVLLLAFSEMDVLKFKQIAGSMKYAFGVQNKVEVKDIPRGTSVI 75 Query: 84 FDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ--- 138 E P R I++ + + T++ ++ + G ++Q Q N ++SQ Sbjct: 76 AQEFRP-GRPDPTPIEVIQQQTVEFTRDMLNYQPGESDQAGGQQNQSGNSRGGTSSQTAN 134 Query: 139 --QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++E S TR S D + +L Sbjct: 135 QPRAEQSNQSQTRTSASDAD----------------------------------NVNELT 160 Query: 197 KKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KKI+ L D I+ G + E+ I+I I R F S+ P V+ + Sbjct: 161 KKIAQQLE----DQILDGAIEVESLGQQIIIRI---REKGAFPAGSAFLQPRFRPVIHAV 213 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKIS 313 G +L +IS+ GHTD + N + R NW LS RA S A++++ G R+ ++ Sbjct: 214 GNLLKDVPGIISVTGHTDNTTIDNELYRSNWELSTQRAVSVAHELVKVEGFDPGRM-ELR 272 Query: 314 GFAHHRLKIASDPMNS--ANRRIDILV 338 G A + +++D NRR++I + Sbjct: 273 GVAENEPLVSNDTWEGRVRNRRVEITI 299 >gi|302343737|ref|YP_003808266.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301640350|gb|ADK85672.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 245 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIA-RDN 284 ++I N +F + P+ + ++KI VLAH + IS+ GHTDAS P DN Sbjct: 124 TVITLANDLLFAPGKAELSPQAVESIKKIASVLAHGSANISVEGHTDASAPGAGSGFGDN 183 Query: 285 WRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 W LSL RA++ L+ G+ DR+ +++ R + +D P A NRR +I+V Sbjct: 184 WSLSLARAHAVLLRLIDPGGLKPDRL-RLAALGDSRPLVPNDTPQRRAMNRRTEIVV 239 >gi|285018158|ref|YP_003375869.1| flagellar motor protein [Xanthomonas albilineans GPE PC73] gi|283473376|emb|CBA15881.1| probable flagellar motor protein [Xanthomonas albilineans] Length = 317 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/318 (20%), Positives = 126/318 (39%), Gaps = 64/318 (20%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 D N +W I YAD MT+L+AFF+VM+ ++ + + + N M A+ G Sbjct: 8 DEHTNHEAWAIPYADLMTLLLAFFVVMYALSTVNAAKYRVM--------ANAMNAAFG-- 57 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 ++Q + + E + D + L+ N Sbjct: 58 -------GTAQTMHPVQVGEQPLQGQSDARATPIQSSPALSILDPNRL----------PA 100 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 SL R ++ +D + ++ +++ +A+++ S LS Sbjct: 101 TSLPRPADALRDEQQLRRAQQQLDR-------------------------IAERLDSALS 135 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHST 263 L+ ++ R+G+ I + + N+ + S S L ++ L ++ ++LA Sbjct: 136 PLIQKKLIT-----VHRSGLWIEV--EINSDILFGSGSATLDQSAHATLAQLAQILASVP 188 Query: 264 EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + G+TD +P NW LS RA S + G+ R+S I G+ R Sbjct: 189 NGVRVEGYTDNTPIATAQFPSNWELSAARAASVVHLFADQGLQPSRLSMI-GYGQFRPHA 247 Query: 323 ASDPMNS--ANRRIDILV 338 ++D + ANRR+ +++ Sbjct: 248 SNDTASGRNANRRVVLVI 265 >gi|149191181|ref|ZP_01869439.1| chemotaxis LafU protein [Vibrio shilonii AK1] gi|148835019|gb|EDL51998.1| chemotaxis LafU protein [Vibrio shilonii AK1] Length = 322 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ L+ LA+++ LSG+ A + V T G+ + I D PMF + + P Sbjct: 113 QQELEVLAQRVKQELSGIDA---LGSVSVFVTPQGVKLVIADSDKGPMFFRGGAKVTP-- 167 Query: 249 IVVLQKIGEVLAHSTEVIS----IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 Q + LA E I I GHTDAS ++ NW LS +RA SA L K G+ Sbjct: 168 --FYQDLLLNLAGLLEKIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLDKGGL 225 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E I +++G + ++ + NRRI++ + Sbjct: 226 QERHIFQVTGMSDTAPIDFNNAKSGINRRIELYI 259 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 G WK+ AD M LM FLV+WI+ D D +K + YF Sbjct: 22 GGWKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60 >gi|166711987|ref|ZP_02243194.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 324 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/319 (20%), Positives = 121/319 (37%), Gaps = 75/319 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L +A G NP Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTSAFGGSSTAANP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +++G T +L D Sbjct: 67 ---------------------VQLGKTQ--------------------------TLGADY 79 Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202 ++ + + S + LP P+S + R +R D + +++S T Sbjct: 80 DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKT 139 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ L+ ++ T R L ++ + +F S+ L + VL + Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD P NW LS RA S + GV+ R++ + G+ R + Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252 Query: 322 I--ASDPMNSANRRIDILV 338 +++ +ANRR+ +++ Sbjct: 253 ADNSTEAGRNANRRVVLII 271 >gi|118581870|ref|YP_903120.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504580|gb|ABL01063.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379] Length = 271 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +K + +D + SS + LV V TR G+++S+ + FD + Sbjct: 99 VKTRATEKDFRQIKSSIEAYLVKQGAQSKVNLTITRRGLIVSL---KEAGFFDSGQAQIK 155 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS- 302 P ++ I EV+ + + + GHTD P N ++ NW LS RA + + L+++ Sbjct: 156 PTAYELINTIAEVMTQYSNPLRLEGHTDNVPI-NTSQFPSNWELSTARAVNGLKYLIRNF 214 Query: 303 GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 GV D+IS ++G+A R A+ + NRR+D+++ +G Sbjct: 215 GVDPDKIS-VAGYAEFRPMADNATPEGRAKNRRVDLVMLSNEG 256 >gi|212636367|ref|YP_002312892.1| flagellar motor protein MotB [Shewanella piezotolerans WP3] gi|212557851|gb|ACJ30305.1| MotB protein [Shewanella piezotolerans WP3] Length = 322 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 80/347 (23%), Positives = 138/347 (39%), Gaps = 63/347 (18%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73 + KKV D P W +AD M++LM FF+++ + D K I FG Sbjct: 1 MAKKVKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 74 -----KNLMTASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 K++ + I E P PE + I+ +E +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGRPESTPIEIINQQTNE-MTEPMLEFQEGEDDSAGGVQQ 119 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 +Q +S ++ E + L KST KS + +++ Sbjct: 120 --------QRGEQRGGESSSTAQEQEDAQALAKSTSESKSEASKAEAAAQEEINQQV--- 168 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPL 245 KK Q+L K+ IV G + E+ I+I I R F S Sbjct: 169 --KKMAQELNKE------------IVDGAIEIESLGQQIIIRI---REKGAFASGSGFLQ 211 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGV 304 P +++++GE+L ++++ GHTD N + NW LS RA + ++ Sbjct: 212 PRFKPIVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVAHEMI---- 267 Query: 305 SEDRISKISGFAHHRLKI----ASDPM--------NSANRRIDILVE 339 ++ GF RLK+ +S P+ + NRR++I +E Sbjct: 268 ------RVKGFDQQRLKVVGMASSAPLVENNSQANRARNRRVEIAIE 308 >gi|209694505|ref|YP_002262433.1| flagellar motor protein MotB [Aliivibrio salmonicida LFI1238] gi|208008456|emb|CAQ78622.1| sodium-driven polar flagellar protein MotB [Aliivibrio salmonicida LFI1238] Length = 309 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 66/323 (20%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFD 85 W ++AD T+LM FF+++ + D K I FG +N++ KG + Sbjct: 16 WMAIFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNVLEVKDIPKGTSVIA 75 Query: 86 EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 ++ P R I++ + + I + ++D G +++ +R N+ S Sbjct: 76 QEFRPGRPEPTPIEVIMQQTIDIPQKTLDFHDGESDRAGGSKREAGNL--TGGESSSTST 133 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + D+E +LE++I K A++R+ Sbjct: 134 QTNAQSDAESQSQNQSQQELEETIKK---------------ALERE-------------- 164 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +A+ V+ E ++I I R F S+ P+ ++++IGE++ Sbjct: 165 ---IAEGAVE---VENLGQQLVIRI---REKGAFPAGSAFLQPKFRPLIRQIGELVKDVP 215 Query: 264 EVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLK 321 +I + GHTD P + + R NW LS RA S +++L G + DR+ ++ G A Sbjct: 216 GIIRVSGHTDNQPLESELYRSNWDLSAQRAVSVGHEMLRVKGFNSDRL-RVRGMA----- 269 Query: 322 IASDPMN--------SANRRIDI 336 +++P+ + NRR++I Sbjct: 270 -STEPLGPNKTAAQRARNRRVEI 291 >gi|116878566|ref|YP_357384.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380] gi|114843202|gb|ABA89214.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380] Length = 299 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 17/149 (11%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTP------MFDKSSSIPLPETIVVLQKIGEVLAHS 262 D++V + E R + IS + R T +FD + P + +L++IG +L ++ Sbjct: 148 DDLVDKLESEIKRGEVTISDLQGRLTVNMVEKILFDSGKADIKPAGLNILKRIGTILKNT 207 Query: 263 TE-VISIRGHTDASP----FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFA 316 + I + GHTD P ++I R NW LS RA S L + G+S +R+S + GF Sbjct: 208 ADKSIRVEGHTDNVPISPRLKDIYRSNWELSTARAGSVVHFLQDRLGISGERLS-VCGFG 266 Query: 317 HHRLKIASDPM---NSANRRIDILVEDRQ 342 + + IAS+ + NRRI I++ +Q Sbjct: 267 PY-MPIASNATAQGRAQNRRIQIVLVPQQ 294 >gi|312879597|ref|ZP_07739397.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260] gi|310782888|gb|EFQ23286.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260] Length = 242 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 9/154 (5%) Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KR + + ++ L L + + K + + + G+ +S+ +Q +F + P + Sbjct: 86 KRTEQFKQGVAQQLQALAEREGLQKEITVKVNQRGVTVSLSEQF---LFAPGGADLSPLS 142 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSE 306 VL KIG++L +++ GHTD +P R + +DNW LS RA L + G+S Sbjct: 143 RRVLFKIGQILKTFPNQLAVEGHTDNAPLRGGLYKDNWGLSAGRAAVVASYLAGTVGLSP 202 Query: 307 DRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 +R+ + G+ + + +D P + A NRR+D+++ Sbjct: 203 NRLEAV-GYGSAKPIVPNDTPEHRALNRRVDLVL 235 >gi|115522688|ref|YP_779599.1| hypothetical protein RPE_0661 [Rhodopseudomonas palustris BisA53] gi|115516635|gb|ABJ04619.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 341 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 11/116 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDASPFRNIARDNWRL 287 FD ++ LPE L K+ VL T V+ + GHTD P + NW L Sbjct: 227 FFDTGQAVLLPEGRAELDKLASVLIDLGKQIPDEITWVLRVDGHTDVRPITGAFKSNWEL 286 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIAS-DPMNSANRRIDILVEDR 341 S RA S Q L+ GV R+ +GFA + L +A+ + NRRI++ + +R Sbjct: 287 SSARAISVVQYLVTLGVPAQRLVA-AGFAEFQPLDVAATEEAYRRNRRIELKLTER 341 >gi|332702472|ref|ZP_08422560.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552621|gb|EGJ49665.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 239 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 10/119 (8%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRL 287 I+ FD S+ P+ + +L+KIG VL +++ GHTD P + A D NW L Sbjct: 117 INLHGPAFFDSGSAELTPDAVRMLRKIGVVLVGVPYHLTVEGHTDNVPIQTGAFDSNWEL 176 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMN-SANRRIDILV 338 S RA + L+ GV D + KI G A R + A+ P N + NRR+ ILV Sbjct: 177 SALRATRVARFLISQGVRPDNM-KIVGLADTRPLLPNNDASGAALPENQTRNRRVVILV 234 >gi|332141875|ref|YP_004427613.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep ecotype'] gi|327551897|gb|AEA98615.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep ecotype'] Length = 309 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 78/328 (23%), Positives = 131/328 (39%), Gaps = 65/328 (19%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KNLMT 78 P L +W +AD M++LM FF+++ + D K I FG K++ Sbjct: 11 PEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPK 70 Query: 79 ASKGIFDEQNP--PERSSQNKIDLSIDEHITKNSVDLKIGSTNQK--KQYQRLENNIFYL 134 + I E P P+ + I +E +T+ ++ + G+ + +Q QR E Sbjct: 71 GTSVIAMEFRPGKPDPTPIESIQQQTNE-MTQQMLEFQAGNEDSAGGRQKQRGE------ 123 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 Q+ + + T+ S + +STD + ++ + Sbjct: 124 ---QRGGQSQQTATQSSSSAE---QSTD--------------------------QSQMAE 151 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L KK++ L + D V+ E+ + I I R F S+ P+ VL+K Sbjct: 152 LMKKVAQQLEKQILDGSVE---MESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRK 205 Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 IG +LA I I GH+D N + R NW LS RA + + + + G E R+S + Sbjct: 206 IGTLLADVPGEIEISGHSDGQHIANELYRSNWDLSSQRAVAVAEAMRTAPGFDESRMSVV 265 Query: 313 SGFAHHRLKIASDPMNSA----NRRIDI 336 I + SA NRR++I Sbjct: 266 G--KADTAPIVENATTSADRAKNRRVEI 291 >gi|219670208|ref|YP_002460643.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2] gi|219540468|gb|ACL22207.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 9/146 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + I L ADN ++ L + G++ISI D T +F+ +++ P+ +L KI Sbjct: 109 ETIKQKLDKFAADNGIETKLVSSIEERGLVISIQD---TLLFESGAAVITPKAREILDKI 165 Query: 256 GEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VLA + I + GHTD P N NW LS+ RA + + M+ + +++S +G Sbjct: 166 NNVLASAPNYIKVEGHTDNLPINTNRFPSNWELSVLRATNVVHI-MQEIIPAEQLSA-TG 223 Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338 + +R ++D + NRR+D+++ Sbjct: 224 YGEYRPLTSNDTEAGRARNRRVDLVI 249 >gi|47566111|ref|ZP_00237149.1| sodium-driven polar flagellar protein PomB, putative [Bacillus cereus G9241] gi|47557028|gb|EAL15358.1| sodium-driven polar flagellar protein PomB, putative [Bacillus cereus G9241] Length = 225 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 11/190 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK M KKR+ DL KK L V +N + Sbjct: 43 KMLEKFSDAEQVDAKVMGNTIPDISHEKNDEKMASKKRMDDLYKK----LKAYVDNNGIS 98 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ K+ I + GHTD Sbjct: 99 QVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNPIVVEGHTD 155 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330 + P N NW LS RA + L++ ED+ G+A + + +D P N Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWEK 215 Query: 331 NRRIDILVED 340 NRR+ I +++ Sbjct: 216 NRRVVIYIKE 225 >gi|293410201|ref|ZP_06653777.1| flagellar motor protein MotB [Escherichia coli B354] gi|291470669|gb|EFF13153.1| flagellar motor protein MotB [Escherichia coli B354] Length = 58 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT 57 KNQ + ++ ++K + GSWKI YADFMT +MAFFLVMW+I+ + Sbjct: 2 KNQAHPIIVVKRRKAKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISIS 50 >gi|148974248|ref|ZP_01811781.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3] gi|145965945|gb|EDK31193.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3] Length = 324 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 11/154 (7%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ L+ LA++I+ LSG+ A + V T G + I D PMF + + P Sbjct: 113 QQELELLAQRITQELSGIDA---LGSVSVFVTPQGAKLVIADSDKGPMFFRGGAKVTP-- 167 Query: 249 IVVLQKIGEVLAHSTEVIS----IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 Q + LA E I I GHTDAS ++ NW LS +RA SA L K G+ Sbjct: 168 --FYQDLLLNLAGLLENIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLNKGGL 225 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E I +++G + + + NRRI++ + Sbjct: 226 QERHIFQVTGMSDTAPVDYENTKSGINRRIELYI 259 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 III+KK G WK+ AD M LM FLV+WI+ D D +K + YF Sbjct: 6 IIIQKKGRRKRNELQHGGWKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60 >gi|119478742|ref|ZP_01618600.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143] gi|119448371|gb|EAW29625.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143] Length = 130 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +LA ISI+GHTD +P + R NW LS RA S L + + R ++SGFA Sbjct: 1 MLATKKGAISIQGHTDNNPIKTTRFRSNWELSTSRAVSVAHALFEGNILNPRRVEVSGFA 60 Query: 317 HHRLKIASDPMN--SANRRIDILVEDRQG 343 R ++D + + NRR++I+++ G Sbjct: 61 ETRPLSSNDTVEGRAKNRRVEIVIQQGLG 89 >gi|171318847|ref|ZP_02907983.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171095946|gb|EDT40882.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 226 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP+ VL +I L+ H+T I + GHTD+ P N + NW LS RA Sbjct: 119 LFNVGDARLLPDATPVLSQIARALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAG 178 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 S + L GV+ R++ I G A + +A D P + NRR+ I V Sbjct: 179 SVVRYLADRGVAPHRLAAI-GRADTQPLVAGDDAPARARNRRVTIFV 224 >gi|206562638|ref|YP_002233401.1| OmpA family protein [Burkholderia cenocepacia J2315] gi|198038678|emb|CAR54638.1| OmpA family protein [Burkholderia cenocepacia J2315] Length = 223 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP++ VL +I + L AH+T I + GHTD+ P N + NW LS RA Sbjct: 116 LFNVGDARLLPDSSPVLNQIAQALSAHATGDILVEGHTDSVPIANAKYESNWELSSARAG 175 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 S + L + GV+ R++ I G A + +A D S NRR+ I V Sbjct: 176 SVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTIFV 221 >gi|289662354|ref|ZP_06483935.1| flagellar motor protein MotD [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 324 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 GS+N Q L +Q +L D Sbjct: 59 -------------------------GSSNAASPVQ--------LGKTQ-------TLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TL+ L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARATLSTLASVLRD 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P NW LS RA S + GV+ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + +++ +ANRR+ +++ Sbjct: 252 RADNSTEAGRNANRRVVLII 271 >gi|255654793|ref|ZP_05400202.1| putative chemotaxis protein [Clostridium difficile QCD-23m63] gi|296449538|ref|ZP_06891315.1| chemotaxis protein MotB [Clostridium difficile NAP08] gi|296261602|gb|EFH08420.1| chemotaxis protein MotB [Clostridium difficile NAP08] Length = 246 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD ++ + + +IG++L I + GHTD +N Sbjct: 116 GLVISL---KDTILFDTGKAVVKDNSREKIIQIGKMLNEMNSYIRVEGHTDNMSIKNSEF 172 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231 Query: 339 ED 340 D Sbjct: 232 VD 233 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 66 >gi|152975140|ref|YP_001374657.1| flagellar motor protein MotS [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023892|gb|ABS21662.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 +P +S EK + KKR+ +L KK L G V +N ++ V TG+ I I+D Sbjct: 63 IPDISHEKNSEKVSSKKRMDNLYKK----LKGYVTENGIQEVQVYREDTGVSIVIVDNL- 117 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 +FD + PE ++ ++ I + GHTD+ P RN NW LS RA Sbjct: 118 --IFDTGDANVKPEAKEIISRLAGFFQSVPNPIVVEGHTDSRPIRNAKFPSNWELSSARA 175 Query: 293 YSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVED 340 + L++ + +R++ + G+A + +D P N A NRR+ I V++ Sbjct: 176 ANMIHHLIEVYEIDPNRLAAV-GYADTKPVAPNDSPDNWAKNRRVVIYVKE 225 >gi|296878139|ref|ZP_06902154.1| chemotaxis protein MotB [Clostridium difficile NAP07] gi|296430892|gb|EFH16724.1| chemotaxis protein MotB [Clostridium difficile NAP07] Length = 248 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD ++ + + +IG++L I + GHTD +N Sbjct: 118 GLVISL---KDTILFDTGKAVVKDNSREKIIQIGKMLNEMNSYIRVEGHTDNMSIKNSEF 174 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 175 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 233 Query: 339 ED 340 D Sbjct: 234 VD 235 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 68 >gi|254248921|ref|ZP_04942241.1| OmpA/MotB [Burkholderia cenocepacia PC184] gi|124875422|gb|EAY65412.1| OmpA/MotB [Burkholderia cenocepacia PC184] Length = 223 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP++ VL +I + L AH+T I + GHTD+ P N + NW LS RA Sbjct: 116 LFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIANAKYESNWELSSARAG 175 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 S + L + GV+ R++ I G A + +A D S NRR+ I V Sbjct: 176 SVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTIFV 221 >gi|170700356|ref|ZP_02891367.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170134743|gb|EDT03060.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 228 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F + LP+ VL +I L+ H+T I + GHTD+ P N + NW LS RA Sbjct: 121 LFSVGDARLLPDATPVLSQIARALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAG 180 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 S + L GV+ R++ I G A + +A D P + NRR+ I V Sbjct: 181 SVVRYLADRGVAPHRLAAI-GRADTQPLVAGDDAPARARNRRVTIFV 226 >gi|78221681|ref|YP_383428.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78192936|gb|ABB30703.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 267 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T+ G+++S+ + FD S+I +L K+ E LA + + + GHTD P + Sbjct: 133 TQRGLVVSL---KEAGFFDSGSAIVRESAYPLLAKVAESLAGYSNAVRVEGHTDTMPISS 189 Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + NW LS RA + L KS + +GF +R A+ S NRR+DI Sbjct: 190 PLFPSNWELSTARATNIVHFLTKSYDFQPSAISAAGFGEYRPIADNATAEGRSKNRRVDI 249 Query: 337 LVEDRQG 343 ++ +G Sbjct: 250 VLLSGEG 256 >gi|288573018|ref|ZP_06391375.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568759|gb|EFC90316.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 240 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G+ +S+ DQ P+ + + PE +L K+GE L +++ GHTD P R Sbjct: 118 GVTVSLSDQLLFPL----GGVDIRPEGKRLLAKLGEFLKGRIPALAVEGHTDDRPLRGGP 173 Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 RDNW LS RA L+ + I + G+ R + SD S NRR+D+++ Sbjct: 174 YRDNWGLSAIRAAIVASYLVDAAGISPSIVQAVGYGPFRPVVPNDSDENRSRNRRVDLVI 233 >gi|60115453|dbj|BAD90019.1| MotB [Pectobacterium carotovorum subsp. carotovorum] Length = 175 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 34/58 (58%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 4 QHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61 >gi|309789304|ref|ZP_07683895.1| chemotaxis motB domain protein [Shigella dysenteriae 1617] gi|308922839|gb|EFP68355.1| chemotaxis motB domain protein [Shigella dysenteriae 1617] Length = 137 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAY 293 MF S+ P +L+ I VL IS+ GHTD P+ + + NW LS DRA Sbjct: 1 MFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRAN 60 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 61 ASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQ 109 >gi|302874600|ref|YP_003843233.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|307690789|ref|ZP_07633235.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|302577457|gb|ADL51469.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B] Length = 236 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD + + L KI E++A +I I GHTD P + ++N LS RA S Sbjct: 126 LFDSGKAEIKTDFATTLNKISEIIASIGNLIEIEGHTDNVPISGVYKNNRDLSYARANSV 185 Query: 296 YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338 + G+S++R ++K G + SD + NRR++IL+ Sbjct: 186 LEYFASRGISQNRMVTKAYGEWYPIKPNDSDANRAENRRVNILI 229 >gi|218778865|ref|YP_002430183.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760249|gb|ACL02715.1| OmpA/MotB domain-containing protein [Desulfatibacillum alkenivorans AK-01] Length = 259 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 7/110 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRA 292 T MFD SS PE +L + +VL + + I GH+D++P ++ D NW LSL RA Sbjct: 150 TVMFDPGSSRIRPEIYPLLDVLAQVLKAVSGRVLIIGHSDSTPMHSVQYDSNWDLSLSRA 209 Query: 293 YSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 + Y + +SEDR+ + G + + IAS+ + NRR++I++ Sbjct: 210 LNVLYYFTTEHDLSEDRLG-VGGMGNTK-PIASNKTQAGRDKNRRVEIVI 257 >gi|119472095|ref|ZP_01614326.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7] gi|119445115|gb|EAW26408.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7] Length = 306 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 131/316 (41%), Gaps = 37/316 (11%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 P L +W +AD M++LM FF+++ + D + ++ K + + K F Sbjct: 10 PPGLPAWMGTFADLMSLLMCFFVLLLAFSEMD------VLKF-----KQIAGSMKFAFGV 58 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 QN E K I T + T Q++ + + + + + + S + Sbjct: 59 QNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAGGRQE 118 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 D G+ +ST E+S E+ ++ +++ +L KKI+ L Sbjct: 119 QRGDKRGGES--RSTSQEQS-------------SEQAISAADQEQTNELVKKIAQQLERQ 163 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + D ++ E+ I+I I R F S+ P+ ++Q IGE+L I Sbjct: 164 IIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGELLKDVPGEI 217 Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++ GHTD N + +NW LS RA + A ++ G + R+ + G A R + + Sbjct: 218 TVSGHTDDFQVSNELYVNNWDLSSKRAVAVASELQTVQGFDKTRM-MVVGRAETRPLVPN 276 Query: 325 DPMNS--ANRRIDILV 338 + NRR++I + Sbjct: 277 ETNEDRRRNRRVEISI 292 >gi|325928224|ref|ZP_08189430.1| flagellar motor protein [Xanthomonas perforans 91-118] gi|325541413|gb|EGD12949.1| flagellar motor protein [Xanthomonas perforans 91-118] Length = 324 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 GS+N+ Q L +Q +L D Sbjct: 59 -------------------------GSSNKASPVQ--------LGKTQ-------TLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TL+ L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLASVLRD 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P NW LS RA S + G++ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + +++ +ANRR+ +++ Sbjct: 252 RADNSTEAGRNANRRVVLII 271 >gi|260773298|ref|ZP_05882214.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP 69.14] gi|260612437|gb|EEX37640.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP 69.14] Length = 314 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 68/333 (20%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L ++ +AD M +LM FF+++ + D K I FG +N + K Sbjct: 10 PPGLPAYMGTFADLMALLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69 Query: 82 G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G + ++ P R ID+ + + IT+ +++ G +++ QR + + + Sbjct: 70 GTSVIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGDSDRAGGNQRDDGQLTGGESP 129 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + S T DS+ +D + + +++++E L + K A+ R+ Sbjct: 130 ETS-------TEDSQDNEDAEQEQEQSEALSEEMEIVLENIKK----ALDRE-------- 170 Query: 198 KISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 I +G V E ILI I R F + S+ P+ ++++I Sbjct: 171 -------------IEQGAVEVENLGQQILIRI---RERGAFPEGSAFLQPQFRPLVRQIA 214 Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 E++ ++ + GHTD + R NW LS RA S Q + +++GF Sbjct: 215 ELVKDVPGIVQVTGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMERVTGF 264 Query: 316 AHHRLKIA------------SDPMNSANRRIDI 336 H RL++ ++ S NRR++I Sbjct: 265 DHRRLEVRGLADTAPVGPNDTEAQRSRNRRVEI 297 >gi|229195941|ref|ZP_04322694.1| OmpA/MotB domain protein [Bacillus cereus m1293] gi|228587500|gb|EEK45565.1| OmpA/MotB domain protein [Bacillus cereus m1293] Length = 213 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ DL KK L V +N + Sbjct: 30 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKK----LKAYVDNNGI 85 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ K+ I + GHT Sbjct: 86 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 142 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ ED+ G+A + + +D P N Sbjct: 143 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWE 202 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 203 KNRRVVIYIKE 213 >gi|42780820|ref|NP_978067.1| flagellar motor protein MotS [Bacillus cereus ATCC 10987] gi|42736740|gb|AAS40675.1| chemotaxis protein MotB, putative [Bacillus cereus ATCC 10987] gi|324325747|gb|ADY21007.1| flagellar motor protein MotS [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ DL KK L V +N + Sbjct: 42 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKK----LKAYVDNNGI 97 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ K+ I + GHT Sbjct: 98 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 154 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ ED+ G+A + + +D P N Sbjct: 155 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|323706054|ref|ZP_08117624.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534668|gb|EGB24449.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 241 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%) Query: 199 ISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I+S L L+ N+ V ++ G +IS+ D T +FD S+ P+ L KIG Sbjct: 89 IASQLDKLIKQYNLQNMVTYKVDERGFVISLND---TLLFDTGSADVKPDQKETLIKIGN 145 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 +L I + G+TD P N NW LS+ RA + ++L+ + +IS + G+ Sbjct: 146 ILKSMPNYIRVEGYTDNVPINNNQFHSNWELSVIRATNVVEILVNDVKMDPAKISAV-GY 204 Query: 316 AHHRLKIA--SDPMNSANRRIDILV 338 +R + SD NRR+DI++ Sbjct: 205 GEYRPIVPNDSDKNRQLNRRVDIVI 229 >gi|225164037|ref|ZP_03726322.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2] gi|224801343|gb|EEG19654.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2] Length = 253 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 30/116 (25%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD-EQNP 89 G+WK+ YADF+T +MA F+V+W I+A D + +YF K L+ A+ G+ E+ Sbjct: 9 GAWKVAYADFVTAMMALFMVLW-ISAQDHQILISTARYFQAPTKPLLNAAAGVMPMEKFR 67 Query: 90 PER--------------SSQNKID--------------LSIDEHITKNSVDLKIGS 117 PE + Q +D L++DE T N +D+++ S Sbjct: 68 PETGKSSGEKDNPGTGLTDQKAVDLEYLNKLARELYRLLNLDESRTDNPIDIQVTS 123 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + T G+ + + D+ P+F + V+ + ++ ++I GHT A Sbjct: 120 QVTSDGLRVILYDRNGRPLFVDRGTELTEWGRFVMDNLAWLIDRDHFYVTIEGHTRAGLT 179 Query: 278 ---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 R + W LS DRA ++ + L + VS I ++ G+A R + +D + +N+R+ Sbjct: 180 LDDRPSSYTLWELSADRANASRRALTEHVVSPALIERVVGYADTRPLLDTDATSESNQRV 239 Query: 335 DI 336 + Sbjct: 240 TL 241 >gi|90408165|ref|ZP_01216333.1| flagellar motor protein [Psychromonas sp. CNPT3] gi|90310695|gb|EAS38812.1| flagellar motor protein [Psychromonas sp. CNPT3] Length = 299 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 132/327 (40%), Gaps = 67/327 (20%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASK---- 81 P L +W +AD M++LM FF+++ + D K I FG M K Sbjct: 10 PEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQSMLEVKDIPK 69 Query: 82 --GIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + ++ P R I++ + + I T+ +D G + S + Sbjct: 70 GTSVIAQEFTPGRPDPTPIEVIMQKTIEMTEAKLDFSEGDS----------------SRA 113 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 E K + + +G + +S++ ++ ++ LAK Sbjct: 114 DGEEDSKEDIPEEGNQGNE--QSSEASEAQHQ-------------------------LAK 146 Query: 198 KISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ L D I +G + E+ ++I I R F S+ P V++K+ Sbjct: 147 AVAQELQ----DEIQEGAIEIESLGQQLIIRI---REKGAFPSGSAFLQPRFRPVIRKVA 199 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 ++LA VI+I GHTD + + R NW LS RA S ++K ++ ++G+ Sbjct: 200 KILADIPGVITISGHTDNEQVHSELYRSNWDLSAQRAVSVAHEMLKIKKIRNKHLVVAGY 259 Query: 316 AHHRL----KIASDPMNSANRRIDILV 338 A+ + KI S+ NRR++I++ Sbjct: 260 ANSKPLTDSKILSE--RKRNRRVEIMI 284 >gi|170736167|ref|YP_001777427.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818355|gb|ACA92937.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 223 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 3/106 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP++ VL +I + L AH+T I + GHTD+ P N + NW LS RA Sbjct: 116 LFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIANAKYESNWELSSARAG 175 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 S + L + GV+ R++ I L D + A NRR+ I V Sbjct: 176 SVVRYLSERGVAPHRLAAIGRADTQPLVAGGDAGSRARNRRVTIFV 221 >gi|78047517|ref|YP_363692.1| flagellar motor protein MotD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035947|emb|CAJ23638.1| flagellar motor protein MotB [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 324 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 77/320 (24%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQNPP 90 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q + FG Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFG----------------- 58 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 GS+N+ Q L +Q +L D Sbjct: 59 -------------------------GSSNKASPVQ--------LGKTQ-------TLGAD 78 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISS 201 ++ + + S + LP P+S + R +R D + +++S Sbjct: 79 YDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSK 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TL+ L+ ++ T R L ++ + +F S+ L + VL Sbjct: 139 TLAPLIDKQLI------TIRRNDLWIEVEINSDILFGTGSATLAGGARGTLSTLASVLRD 192 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + G+TD P NW LS RA S + G++ R++ + G+ R Sbjct: 193 APNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GYGEFRA 251 Query: 321 KI--ASDPMNSANRRIDILV 338 + +++ +ANRR+ +++ Sbjct: 252 RADNSTEAGRNANRRVVLII 271 >gi|312884943|ref|ZP_07744633.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122] gi|309367420|gb|EFP94982.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122] Length = 328 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 77/344 (22%), Positives = 143/344 (41%), Gaps = 59/344 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-- 73 ++++ A P L W +AD M++LM FF+++ + D K I FG Sbjct: 1 MEEEEACKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQ 60 Query: 74 -----KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQR 126 K++ + I E P R ID+ + + IT+ +V+ G +++ QR Sbjct: 61 NRLEVKDIPKGTSVIAMEFR-PGRPEPTPIDVIMQQTIDITQQTVEFHEGESDRAGGMQR 119 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + K + + +E + + D + +++ S+E+ Sbjct: 120 --------------DQGKETGGQSTETSTETSQEADSQSQEEQQQQQQ---ESQEQQQQS 162 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPL 245 + ++L+ +A+ I L I +G + E G I I I +R F + S+ Sbjct: 163 ESSEQLETVAENIKQALE----REIEQGAM-EVENLGQQIDIRIRERGA--FPEGSAFLQ 215 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304 P+ ++++I E++ V+ + GHTD P + R NW LS RA S Q Sbjct: 216 PKFRPLVRQIAELVKDIPGVVRVSGHTDNQPIDSELYRSNWDLSAQRAVSVAQ------- 268 Query: 305 SEDRISKISGFAHHRLKIA----SDPMN--------SANRRIDI 336 + K+ GF H RL++ ++P+ + NRR++I Sbjct: 269 ---EMEKVRGFKHDRLRVRGMADTEPLGPNKTEAQRALNRRVEI 309 >gi|15639711|ref|NP_219161.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum str. Nichols] gi|189025949|ref|YP_001933721.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum SS14] gi|3024159|sp|O07887|MOTB_TREPA RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|2196896|gb|AAB61254.1| MotB [Treponema pallidum] gi|3323025|gb|AAC65689.1| flagellar motor rotation protein (motB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018524|gb|ACD71142.1| flagellar motor rotation protein [Treponema pallidum subsp. pallidum SS14] gi|291060088|gb|ADD72823.1| chemotaxis protein MotB [Treponema pallidum subsp. pallidum str. Chicago] Length = 238 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 25/185 (13%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 DL ++N LP L K + LA KK + A +I S + +D Sbjct: 69 DLGNTVNT-----LPSLEKGQKLATALKKAVSLFAPEIKSNKIAVTSDE----------- 112 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF- 277 G++IS+ ++ + SS + + E+ L ++ + L A + I GHTD+ Sbjct: 113 RGLVISLTS--DSFFYPGSSDLNVEESREALLRVAQFLSDHALAGRRFRIEGHTDSVEVP 170 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRID 335 + + DNW LS RA L G E+R S ++G+A R K +++ P A NRR+D Sbjct: 171 EDGSTDNWELSTRRAVRVLHYLTDFGAQENRFS-LAGYADTRAKFSNESPEGRAYNRRVD 229 Query: 336 ILVED 340 I++ D Sbjct: 230 IVILD 234 >gi|149183513|ref|ZP_01861940.1| flagellar motor protein MotB [Bacillus sp. SG-1] gi|148848785|gb|EDL63008.1| flagellar motor protein MotB [Bacillus sp. SG-1] Length = 253 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/316 (21%), Positives = 129/316 (40%), Gaps = 87/316 (27%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP-P 90 SW I YAD +T+L+A F+V++ ++ D +A+ + FN + G+ + P P Sbjct: 17 SWLIPYADVLTLLLALFIVLFASSSVDAQKFQAMSKAFN----EIFVGGTGVMEYPTPVP 72 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 E + G N+ ++ +NSLT D Sbjct: 73 ETDA---------------------GDRNKNEE--------------------QNSLTVD 91 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 +LE + +E M+ K+LQD ++G +A N Sbjct: 92 -----------ELEAAKKRE---------------MQELKKLQD-------RVNGYIAAN 118 Query: 211 IVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 ++ E T G+L++I R+ +F S++ + + +++ +L T + I Sbjct: 119 ELQTQFATELTSEGLLLTI---RDNVLFQSGSAVVGAKDEGIAKELSGLLEMDTPRSVII 175 Query: 269 RGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P + NW LS+ RA + ++++K+ + R GF + ++D Sbjct: 176 SGHTDNVPISTANYESNWELSVMRAVNFMKIILKNQNLDPRWFSAKGFGEFKPMASNDTS 235 Query: 328 N--SANRRIDILVEDR 341 + NRR+++L+ R Sbjct: 236 EGRAKNRRVEVLILPR 251 >gi|255305748|ref|ZP_05349920.1| putative chemotaxis protein [Clostridium difficile ATCC 43255] Length = 246 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD +I + + +IG++L + + GHTD +N Sbjct: 116 GLVISL---KDTILFDTGKAIVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 172 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231 Query: 339 ED 340 D Sbjct: 232 VD 233 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN--- 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGNSKI 69 Query: 89 -PPERSSQNKID 99 P + N +D Sbjct: 70 EPVVEAGSNDLD 81 >gi|197124706|ref|YP_002136657.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|196174555|gb|ACG75528.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] Length = 206 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 14/130 (10%) Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 + ET RT G+L+ + + +FD SS PE I L+++G+VLA + + I I G+T Sbjct: 80 IAETKRTENGLLV---EMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYT 136 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 DA+ +++ N LSL RA + +VL+ GV E +I+ + G R +A + S Sbjct: 137 DATGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVR-PVADNGTASGRA 191 Query: 331 -NRRIDILVE 339 NRR+++ ++ Sbjct: 192 QNRRVELHID 201 >gi|325523698|gb|EGD01964.1| OmpA family protein [Burkholderia sp. TJI49] Length = 226 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LPE+ VL +I L AH+T I + GHTD P N + NW LS RA Sbjct: 119 LFNVGDARLLPESAPVLDRIALALGAHATGDILVEGHTDRVPIANAKYESNWELSSARAG 178 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 S + L + GV+ R++ + G A + +A D S NRR+ I V Sbjct: 179 SVVRYLAERGVAPHRLAAV-GRADTQPLVAGDDAASRARNRRVTIFV 224 >gi|295696765|ref|YP_003590003.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912] gi|295412367|gb|ADG06859.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912] Length = 266 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + V+ E G+LIS+ R+ +FD + PE +L + LA + I Sbjct: 120 GVAGQVVVEDKPKGLLISL---RDVILFDTGKADLKPEARKLLDGLLPFLAQVGNPLEIE 176 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PM 327 GHTD P NW LS RA + + L G+ R+S +G+ R ++D P Sbjct: 177 GHTDNRPIHTAQFPSNWELSTARALTVLEYLQAKGIDPKRLSA-TGYGEWRPVASNDNPE 235 Query: 328 NSA-NRRIDILVE 339 A NRR++I +E Sbjct: 236 GQALNRRVNITIE 248 >gi|255099860|ref|ZP_05328837.1| putative chemotaxis protein [Clostridium difficile QCD-63q42] Length = 246 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD +I + + +IG++L + + GHTD +N Sbjct: 116 GLVISL---KDTILFDTGKAIVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 172 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231 Query: 339 ED 340 D Sbjct: 232 VD 233 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 66 >gi|325923841|ref|ZP_08185450.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] gi|325545675|gb|EGD16920.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] Length = 329 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 54/311 (17%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L TA G + +P + Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQA-------LTTAFGGSSNAASPVQ 68 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + D + +K G+ SN S+ Sbjct: 69 IGKTQTLGADYDRPSVIKAGVIKAGAP-------------MAASNGPTDPTLLPSMAAQM 115 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADN 210 P+S + R +R D +A ++S TL+ L+ Sbjct: 116 RM-----------------------PVSLRNQAQLARAQRQMDAVAAQLSKTLAPLIDKK 152 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 ++ T R L ++ + +F S+ L + VL + + + G Sbjct: 153 LI------TIRRNDLWIEVEINSDILFGTGSAALAGTARDTLSTLASVLRDAPNGVRVEG 206 Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPM 327 +TD P NW LS RA S + GV+ R++ + G+ R + +++ Sbjct: 207 YTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRARADNSTEAG 265 Query: 328 NSANRRIDILV 338 +ANRR+ +++ Sbjct: 266 RNANRRVVLII 276 >gi|303249271|ref|ZP_07335504.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489310|gb|EFL49266.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 264 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 16/118 (13%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KN + + +II ++ ++ GSWK+ YADF+T LMAFFL++W++ + TK+ + Sbjct: 3 KNSDKGKTVIIYRESEGGHGGHHGGSWKVAYADFVTALMAFFLLLWLVVSLKPKTKQELS 62 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQN--KIDLSIDEHITKNSVDLKIGSTNQKK 122 F D+ P + QN K+ I K S + K+ N+ K Sbjct: 63 LVFQ--------------DKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQENKLK 106 >gi|126698325|ref|YP_001087222.1| putative chemotaxis protein [Clostridium difficile 630] gi|115249762|emb|CAJ67579.1| putative OmpA/MotB proton channel [Clostridium difficile] Length = 248 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD +I + + +IG++L + + GHTD +N Sbjct: 118 GLVISL---KDTILFDTGKAIVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 174 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 175 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 233 Query: 339 ED 340 D Sbjct: 234 VD 235 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 68 >gi|296134255|ref|YP_003641502.1| OmpA/MotB domain protein [Thermincola sp. JR] gi|296032833|gb|ADG83601.1| OmpA/MotB domain protein [Thermincola potens JR] Length = 296 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 12/180 (6%) Query: 167 INKEENYFLP----PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 + + YF+ PL + A +KK ++++ K + + N+ V+ Sbjct: 58 VGQNSGYFIGEAPGPLVIPEQSAGAQKKEMEEMKKAKEQLDAYIKGQNLGGKVVVAYEER 117 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ + T F S+ P+ L KIG+VL + + I GHT P R Sbjct: 118 GLVISL---KETMFFAIGSAAINPQAQETLIKIGQVLKNMPNNLRIEGHTCNLPIRTANF 174 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 NW LS RA + + L+ + G R+S +G+ +R + S+ + NRR+DI+V Sbjct: 175 PSNWELSTARATNVVKFLIDRVGFDPKRLSA-TGYGEYRPLVPNTSEANRAMNRRVDIVV 233 >gi|220919426|ref|YP_002494730.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957280|gb|ACL67664.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 206 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 16/131 (12%) Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 + ET RT G+L+ + + +FD SS PE I L+++G+VLA + + I I G+T Sbjct: 80 IAETKRTENGLLV---EMKGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIRIEGYT 136 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 DA+ +++ N LSL RA + +VL+ GV E +I+ ++ +D SA Sbjct: 137 DATGSKSM---NEELSLRRADAVKRVLVGRGVQE---KQITALGMGPVRPVADNGTSAGR 190 Query: 331 --NRRIDILVE 339 NRR+++ ++ Sbjct: 191 AQNRRVELHID 201 >gi|237653594|ref|YP_002889908.1| flagellar motor protein MotD [Thauera sp. MZ1T] gi|237624841|gb|ACR01531.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 279 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 13/171 (7%) Query: 177 PLSKEKILAMKRKK---RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 P + + ++ +R++ R++++A +I LS L VK T +S+ + Sbjct: 87 PPAVDPVVEQRRQQAAQRMRNVADEIRRVLSPLTGSGQVK-----VTEGAFGVSV-EINA 140 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 + +F + + LQ + VLA + I++ GHTD P NW LS RA Sbjct: 141 SLLFAPGEAALGSNAVSALQAVARVLAPAEFPITVEGHTDNVPISTFRFPSNWELSAVRA 200 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 + ++ + +GV+ R++ +G+A R A + NRR+ IL+E R Sbjct: 201 STVARLFIDNGVTPARLTA-AGYADQRPVADNADEEGRGRNRRVTILIESR 250 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 33/49 (67%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 ++++ +D+ +N W + YADF+T+L AFF+VM+ +++ ++ + + Sbjct: 1 MRRRRKLDEEHDNHERWLVSYADFITLLFAFFVVMYSLSSVNEGKYRVL 49 >gi|107026971|ref|YP_624482.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116691833|ref|YP_837366.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|105896345|gb|ABF79509.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116649833|gb|ABK10473.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 223 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP + VL +I + L+ H+T I + GHTD+ P N + NW LS RA Sbjct: 116 LFNVGDARLLPHSSPVLNQIAQALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAG 175 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 S + L + GV+ R++ I G A + +A D S NRR+ I V Sbjct: 176 SVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAGSRARNRRVTIFV 221 >gi|169825896|ref|YP_001696054.1| chemotaxis protein motB [Lysinibacillus sphaericus C3-41] gi|168990384|gb|ACA37924.1| Chemotaxis protein motB (Motility protein B) [Lysinibacillus sphaericus C3-41] Length = 235 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 13/157 (8%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K Q+LA+ I ++ +A N ++G E T G+L++I R++ +FD + PE Sbjct: 71 KDQQELAE-IKDSVDNFIAVNEMEGQFATEMTDEGLLVTI---RDSILFDPGQATIKPEY 126 Query: 249 IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV--- 304 I + +++ +VL ++ I I GHTD P N LSL RA + Y VL+ S Sbjct: 127 IPIAKELADVLVSNPPRNIVITGHTDNVPAGPNFSSNLELSLMRASNFYMVLLDSNSQLK 186 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 SE+ +K G+ +R +D + NRR+++L++ Sbjct: 187 SENFSAK--GYGENRAIAPNDTAEGRAKNRRVEVLIQ 221 >gi|37679056|ref|NP_933665.1| flagellar motor protein MotB [Vibrio vulnificus YJ016] gi|326423687|ref|NP_759314.2| flagellar motor rotation protein motB [Vibrio vulnificus CMCP6] gi|37197798|dbj|BAC93636.1| flagellar motor protein [Vibrio vulnificus YJ016] gi|319999044|gb|AAO08841.2| Flagellar motor rotation protein motB [Vibrio vulnificus CMCP6] Length = 318 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/335 (22%), Positives = 136/335 (40%), Gaps = 67/335 (20%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA-- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 9 DCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKD 68 Query: 80 -SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 KG I ++ P R ID+ + + IT+ +++ G +++ QR + + Sbjct: 69 IPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDQGK---M 125 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + Q E + ++ + ++++KE + + K A++R+ Sbjct: 126 TGGQSPETSTQTNQNTEQQ-----QQQQQSEAMSKEMETLMESIKK----ALERE----- 171 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 I +G + E G I +I R F + S+ P+ ++++ Sbjct: 172 ----------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRPLVRQ 213 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I E++ ++ I GHTD + R NW LS RA S Q + K+ Sbjct: 214 IAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMEKVR 263 Query: 314 GFAHHRLKIA----SDPM--------NSANRRIDI 336 GF+H RL++ +DP+ + NRR++I Sbjct: 264 GFSHQRLRVRGMADTDPLVDNDTEENRARNRRVEI 298 >gi|304405743|ref|ZP_07387401.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] gi|304344986|gb|EFM10822.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] Length = 278 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNI- 280 +LI+I D ++ SS PE+ + Q I ++L E+I + GHTD P N Sbjct: 147 LLITISD---NALYASGSSAVKPESRKLGQAIAKMLKQYPGYEII-VAGHTDNQPISNSD 202 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDI 336 RDNW LS DRA + Q+L+ S + ++ +G+ R A++ S NRR+++ Sbjct: 203 FRDNWDLSSDRALNFMQILLASAQLDPKLISSTGYGEFRPLTSNATEAGRSKNRRVEV 260 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 SW I YAD MT+L+A F+V++ +++ D + + FN Sbjct: 17 SWLIPYADLMTLLLALFIVLFSMSSVDAKRFDEMSRAFN 55 >gi|116620375|ref|YP_822531.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223537|gb|ABJ82246.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 23/135 (17%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------------NPF--GKNL 76 G+WK+ YADF+T LMA F+V+W++N++ K +I YF P G+ L Sbjct: 16 GAWKVAYADFVTALMALFIVLWLMNSS-TKVKSSISGYFRDPRGFTRTLGAGPANSGEGL 74 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN--IFYL 134 + G+ D + E + L +K ++K T + + LEN+ +F++ Sbjct: 75 SLRTDGLLDIRRKLEEA------LRAMPEFSKLRDNVKFSVTGEGLRIDLLENDQGMFFV 128 Query: 135 SNSQQSEHCKNSLTR 149 S S L R Sbjct: 129 SGSPAPTRAGEELLR 143 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R L D+ +K+ L + + ++ V F T G+ I +++ F S P Sbjct: 77 RTDGLLDIRRKLEEALRAMPEFSKLRDNVKFSVTGEGLRIDLLENDQGMFFVSGSPAPTR 136 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI----ARDNWRLSLDRAYSAYQVLMKS 302 +L+ + + + I GHTDA PFRN NW L+ DRA +A ++L Sbjct: 137 AGEELLRVLAREIGRLPNSLVIEGHTDAKPFRNARPAEGYSNWELAADRANAARRLLHLF 196 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 GV +++ ++ GFA + D ++ NRR+ ++V+ Sbjct: 197 GVRPEQVVEVRGFADQKPFNERDRFDARNRRVSVVVK 233 >gi|83648502|ref|YP_436937.1| flagellar motor protein MotB [Hahella chejuensis KCTC 2396] gi|83636545|gb|ABC32512.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 326 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A ++S L V +N V+ ET I+I + ++ + F S+ PE V+ K+ Sbjct: 147 AITLASALESEVRNNQVE---VETRGRKIVIRVQEKGS---FSSGSADLNPEFYPVIDKL 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+L IS+ GH+D+ P R R NW LS RA L +SG E I+G Sbjct: 201 VELLKSMEGSISVEGHSDSIPIRTARFRSNWDLSAARALEVAHALFESGELEPSRFSIAG 260 Query: 315 FAHHRLKIASDPMN--SANRRIDILVE 339 +A + +D + NRR++I+++ Sbjct: 261 YADTKPLAPNDSAENRARNRRVEIILQ 287 >gi|325294743|ref|YP_004281257.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065191|gb|ADY73198.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 233 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294 +F S P ETI ++ ++ + L I+I GHTD P R+ I NW LS RA S Sbjct: 125 LFPPGSEKPYKETIPLIMEMCKKLKELELPITIEGHTDNVPIRSKIFPSNWELSAARAVS 184 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 ++ ++ G ++S + + + P A NRRI+I++ Sbjct: 185 VLRLFIQCGYDPRKLSAAGCGPYRPIAPNTTPEGRAKNRRIEIVI 229 >gi|213583424|ref|ZP_03365250.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 142 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ I VL IS+ GHTD P+ N + NW LS DRA ++ + L+ G+ + Sbjct: 9 ILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGK 68 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + ++ G A P ++ NRRI +LV ++Q Sbjct: 69 VLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 103 >gi|254974362|ref|ZP_05270834.1| putative chemotaxis protein [Clostridium difficile QCD-66c26] gi|255091756|ref|ZP_05321234.1| putative chemotaxis protein [Clostridium difficile CIP 107932] gi|255313486|ref|ZP_05355069.1| putative chemotaxis protein [Clostridium difficile QCD-76w55] gi|255516174|ref|ZP_05383850.1| putative chemotaxis protein [Clostridium difficile QCD-97b34] gi|255649270|ref|ZP_05396172.1| putative chemotaxis protein [Clostridium difficile QCD-37x79] gi|306519371|ref|ZP_07405718.1| putative chemotaxis protein [Clostridium difficile QCD-32g58] Length = 246 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD ++ + + +IG++L + + GHTD +N Sbjct: 116 GLVISL---KDTILFDTGKAVVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 172 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 173 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 231 Query: 339 ED 340 D Sbjct: 232 VD 233 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 66 >gi|260682442|ref|YP_003213727.1| putative chemotaxis protein [Clostridium difficile CD196] gi|260686041|ref|YP_003217174.1| putative chemotaxis protein [Clostridium difficile R20291] gi|260208605|emb|CBA61322.1| putative chemotaxis protein [Clostridium difficile CD196] gi|260212057|emb|CBE02637.1| putative chemotaxis protein [Clostridium difficile R20291] Length = 248 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS+ ++T +FD ++ + + +IG++L + + GHTD +N Sbjct: 118 GLVISL---KDTILFDTGKAVVKDNSRDKIIQIGKMLNEMNSYMRVEGHTDNMSIKNSEF 174 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 + NW LS+ RA + Q+L+ +G++ D++S + G+ R + +S+ S NRR+DI++ Sbjct: 175 KSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV-GYGEFRPIAENSSEEGRSKNRRVDIVL 233 Query: 339 ED 340 D Sbjct: 234 VD 235 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + Y+D +T+LM FF++M+ ++ D + K + Q N FG S G+ + N Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLNSAFG-----GSSGVIEGGN 68 >gi|311695186|gb|ADP98059.1| flagellar motor protein MotD [marine bacterium HP15] Length = 260 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 89/310 (28%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ D +N W I YADF+T+L AFF+VM+ +++ ++ K + + Sbjct: 1 MRRRRQPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLT------ 54 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G+F N P+RS Q ++IG Q+ Sbjct: 55 -----GVF---NAPQRSFQ----------------PIEIGDQPQR--------------- 75 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-----KILAMKRKKR 191 S+N +PP E ++ A R + Sbjct: 76 -----------------------------SLNAPAENVIPPAVTEAPRNPEMDAQARTEA 106 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A ++S L+ +V ET+ + +++ N+ +F + P + V Sbjct: 107 LRAMADQLSMEFDELINQGVVS---LETSDQWLELNL---PNSLLFGSGDAEPHYDAFEV 160 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++KI VL + + + G TD P + +R NW LS RA + ++L+ G+ +R+ Sbjct: 161 VEKIATVLNNRDNAVKVEGFTDNQPI-STSRFPSNWELSAARAAAMVRMLVMEGIEPERL 219 Query: 310 SKISGFAHHR 319 + + G+ ++ Sbjct: 220 AAV-GYGQYQ 228 >gi|86751586|ref|YP_488082.1| hypothetical protein RPB_4488 [Rhodopseudomonas palustris HaA2] gi|86574614|gb|ABD09171.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 341 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIARDNWRL 287 FD ++ LPE L K+ L + V+ + GHTD P + + NW L Sbjct: 227 FFDTGQALLLPEGRAELDKLAAALTELDKKIPSEIPWVLRVDGHTDRRPITGVFKSNWEL 286 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341 S RA S Q L+ GV R+ +GFA + L A +D NRRI++ + +R Sbjct: 287 SSARAISVVQYLVSLGVPAQRLVA-AGFAEFQPLDTANTDEAYRRNRRIELKLTER 341 >gi|91978797|ref|YP_571456.1| hypothetical protein RPD_4338 [Rhodopseudomonas palustris BisB5] gi|91685253|gb|ABE41555.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 341 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 11/116 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIARDNWRL 287 FD ++ LPE L K+ L + V+ + GHTD P + NW L Sbjct: 227 FFDTGQALLLPEGRAELDKLAPALTELDKKIPPEIAWVLRVDGHTDRRPITGAFKSNWEL 286 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341 S RA S Q L+ GV R+ +GFA + L IA +D NRRI++ + +R Sbjct: 287 SSARAISVVQYLVSLGVPAQRLVA-AGFAEFQPLDIANTDDAYKRNRRIELKLTER 341 >gi|78358626|ref|YP_390075.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221031|gb|ABB40380.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 242 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L + +VL +S+ ++I GHTD SP + DN+ LS RA + ++SG+ +R S Sbjct: 146 LLAPLADVLEYSSADVTISGHTDDSPASGV--DNYDLSGRRAMAVLDFFLESGLGAERFS 203 Query: 311 KISGFAHHR-LKIASDPMNSA-NRRIDILVEDRQ 342 +SG+ + L+ + P A NRR++IL++ Q Sbjct: 204 -VSGYGPDKPLESNATPQGRAQNRRVEILLKTTQ 236 >gi|302342669|ref|YP_003807198.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301639282|gb|ADK84604.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 244 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 16/162 (9%) Query: 197 KKIS-STLSGLVADNIVKGVLFETTRTGI--LISIIDQ--------RNTPMFDKSSSIPL 245 K++S S L+G D I++ + T + + ++ +IDQ + +F+ SS Sbjct: 83 KRMSLSELTGRQTDPIMQDIREVTDQKNLDDVVEVIDQGDKVILRVKGQLLFNTGSSDIN 142 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 P+ + VL+ I +V+ + + ++GHTD+ P ++ NW LS RA + + L++ G Sbjct: 143 PQALGVLKAIADVVDRNPGWRLDVKGHTDSRPISSVKFASNWELSSLRATAVLRYLIEQG 202 Query: 304 VSEDRISKISGFAH-HRLKIASDPMNSA-NRRIDILVEDRQG 343 VS R++ +G+A RL S N A NRR++ ++E ++G Sbjct: 203 VSPSRLTA-TGYADTQRLVPDSSEENMARNRRVEFVLEKQKG 243 >gi|222053743|ref|YP_002536105.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221563032|gb|ACM19004.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 258 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 11/136 (8%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V E R G+++S+ + FD S+I +L + E L + T + + GHTD Sbjct: 125 VSVEINRRGLVVSL---KEAGFFDSGSAIVQQSAYSLLAHVAESLVNYTNPVRVEGHTDN 181 Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSA 330 P + NW LS RA + Q L+K E +GF +R +A + S Sbjct: 182 VPINSRTFPSNWELSTARATNLVQYLIKYYEFEPEKISATGFGEYR-PVADNTTVDGRSK 240 Query: 331 NRRIDIL---VEDRQG 343 NRR+DI+ VE +G Sbjct: 241 NRRVDIVLLSVESERG 256 >gi|229029408|ref|ZP_04185491.1| OmpA/MotB domain protein [Bacillus cereus AH1271] gi|228731867|gb|EEL82766.1| OmpA/MotB domain protein [Bacillus cereus AH1271] Length = 227 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D+E+ K +P +S EK M KKR+ DL KK L V N + Sbjct: 44 SKMLEKFSDVEQVDAKVMENTIPDISHEKNDEKMISKKRMDDLYKK----LKAYVDSNGI 99 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ ED+ G+A + + +D P N Sbjct: 157 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWE 216 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 217 KNRRVVIYIKE 227 >gi|269962340|ref|ZP_06176690.1| flagellar motor protein [Vibrio harveyi 1DA3] gi|269832836|gb|EEZ86945.1| flagellar motor protein [Vibrio harveyi 1DA3] Length = 314 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F + S+ P+ ++++I E++ ++ + GHTD P + R NW Sbjct: 186 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWD 245 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRI 334 LS RA S Q + K+ GF+H RL++ SD + NRR+ Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPLAPNDSDANRALNRRV 295 Query: 335 DI 336 +I Sbjct: 296 EI 297 >gi|253996642|ref|YP_003048706.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8] gi|253983321|gb|ACT48179.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8] Length = 271 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 21/221 (9%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 +Y++L N+I + S + T EKG T+ SI K PL Sbjct: 47 KYKQLTNSIGTAFSGNGSSGVNQTST---EKGLGAKGITEANSSIVK-------PLPLSH 96 Query: 183 ILAMKRKKRLQDLAK---KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + K ++ +AK ++S+ L+ ++ + ++ + +T+R GI I I D +F Sbjct: 97 LYSEKLRRERDSMAKTGVEVSNKLAPMINEGKIQ--VIQTSR-GIRIDIQDNL---LFGA 150 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298 S+ P ++ +I ++ + I + GHTD +P N NW LS RA S ++ Sbjct: 151 GSADLSPTANAIISEIVPLIKDNQRKIQVEGHTDNTPIHNATFFSNWELSAVRASSVVRL 210 Query: 299 LMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 L G+SE R+S G + + S+ + NRR+ I++ Sbjct: 211 LSALGISEQRLSATGLGASQPISENESEAGRAKNRRVSIII 251 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58 +I+K+V D N W + YADF+T+L AFF+VM+ I++ + Sbjct: 4 LIRKRVEEDQ--ENHERWLVSYADFITLLFAFFVVMYSISSVE 44 >gi|332298234|ref|YP_004440156.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] gi|332181337|gb|AEE17025.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] Length = 236 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 31/189 (16%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 DL +IN LP L K K L + K+ + A + S L +D Sbjct: 66 ADLGNTINS-----LPSLEKGKSLGLSVKRAVSLFAPDVKSNKITLSSD----------- 109 Query: 221 RTGILISII-DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASP 276 G++I++ D P S+++ + ET + ++ + L+ S I GHTD +P Sbjct: 110 ERGLVITLASDSFFAP---GSAALNIEETRATVLRLAQFLSSKELSGRRFRIEGHTDGTP 166 Query: 277 FRNIARD---NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SAN 331 ++D NW LS RA + L GV+E + S ++G+A R K ++D + N Sbjct: 167 V--ASKDFPSNWELSAARAVNVLHYLSDFGVNEAQFS-VAGYADTRPKFSNDTAEGRAYN 223 Query: 332 RRIDILVED 340 RR+DI++ D Sbjct: 224 RRVDIIILD 232 >gi|116332026|ref|YP_801744.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125715|gb|ABJ76986.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 224 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 L N ++ +SNS+ K+ E + L + +L +S+N+ L + +E L + Sbjct: 11 LLNLVYCVSNSKYESLLKSYEESKLENQRILEEKVNLSRSLNE-----LKRIQEESELRI 65 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + KRL +A S +G + I+ G + + IL + + + + Sbjct: 66 QEYKRL--IATFRSLIDAGKLKIKIIDGRMVVVLSSDILFPV----GSAFLSSAGIASIR 119 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E +L +G + I GHTD +P NW L+ RA + ++K+G+ E Sbjct: 120 EVTTLLASLG------GKRFQIEGHTDDTPTGIKGYTNWELASSRALNVLHTMIKAGMPE 173 Query: 307 DRISKISGFAHHRLKIASDPMN-SANRRIDILV 338 +RIS S A + P N SANRRI+I++ Sbjct: 174 ERISAASMGASRPALPNTSPENRSANRRIEIVI 206 >gi|315635427|ref|ZP_07890693.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315480185|gb|EFU70852.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 316 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++ SSIP ++ +++I ++L + + + GHTD+ R A N ++S DRA S Sbjct: 214 FERKSSIPTEQSQNTIKEIAKILNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSV 270 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338 +L+ SGV+E RI I G+ IA D N NRR++ ++ Sbjct: 271 KNILVNSGVNETRIKAI-GYGEE-FPIAKDDENGLSEINRRVEFII 314 >gi|258624381|ref|ZP_05719329.1| flagellar motor protein [Vibrio mimicus VM603] gi|258583343|gb|EEW08144.1| flagellar motor protein [Vibrio mimicus VM603] Length = 319 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 76/340 (22%), Positives = 132/340 (38%), Gaps = 79/340 (23%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L +W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 11 PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70 Query: 82 G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G I ++ P R ID+ + + IT+ ++D + G +++ Q Sbjct: 71 GTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQ------------ 118 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 RDS K L E S +N + + Q AK Sbjct: 119 -----------RDSGK---LTGGQSAESSTQDNQNT--------------QSEMQQQQAK 150 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVV 251 +S + VA++I K + E + I + + Q R F + S+ P+ + Sbjct: 151 AMSEQME-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPL 209 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +++I +++ + + GHTD + R NW LS RA S Q + Sbjct: 210 VRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EME 259 Query: 311 KISGFAHHRLKIA----SDPMN--------SANRRIDILV 338 K+ GF H RL++ + P+ + NRR++I + Sbjct: 260 KVKGFDHQRLQVRGMADTQPLGPNDTEAQRALNRRVEISI 299 >gi|254251112|ref|ZP_04944430.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158] gi|124893721|gb|EAY67601.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158] Length = 431 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMF 237 + +IL + R+ RL +++ LS L+ D I +GVL E R SI+ + MF Sbjct: 274 EARILEIGRE-RLASAPQRLR--LSQLLRDEIARGVLTVDEDERR----SIVVFKGDSMF 326 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAY 296 S LP +L K+ +A + + GHTD P R+ A +N LS RA Sbjct: 327 ASGQSTVLPGIEPILDKVAREVARVGGTVLVTGHTDNQPIRSAAFANNLALSEKRAAYVA 386 Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 Q+L + G +RI + G A+ + NRR++I+V Sbjct: 387 QILQRDGTPAERIRAVGKGDTQPVGDNATAAGRALNRRVEIMV 429 >gi|119900180|ref|YP_935393.1| hypothetical protein azo3891 [Azoarcus sp. BH72] gi|119672593|emb|CAL96507.1| putative outer membrane protein [Azoarcus sp. BH72] Length = 434 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ L G +A I +G++ T R S++ + +F+ +S+ P + ++ +IGE Sbjct: 289 KVPDRLQGFLAPEIREGLV--TVRDLPDRSVVQIQGDGLFEPASATLAPRVLPLMARIGE 346 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +A + +RGH+D P R+ AR NW LS RA S VL + RI + G Sbjct: 347 AVARVKGSVLVRGHSDDRPIRS-ARFPSNWHLSQARADSVAAVLAPQ-LGGARI-ETEGR 403 Query: 316 AHHRLKIASD-PMNSA-NRRIDILV 338 A ++D P A NRR++I+V Sbjct: 404 AESEPVASNDTPEGRARNRRVEIIV 428 >gi|289672566|ref|ZP_06493456.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae FF5] Length = 48 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT 57 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+I+++ Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLISSS 48 >gi|326794296|ref|YP_004312116.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326545060|gb|ADZ90280.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 334 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/317 (22%), Positives = 137/317 (43%), Gaps = 47/317 (14%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 L ++ +AD M++LM FF+++ D + ++ K L + + F Sbjct: 15 GLPAYMGTFADLMSLLMCFFVLLLSFAEMD------VLKF-----KQLAGSMREAF---- 59 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 + + I S+ + Q+ R E + + +N+L Sbjct: 60 ------------GVQKQIEAQSIPMGTSIIAQEFSPGRPEPTPINEVRQKADDRPENTL- 106 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSK--EKILA-MKRKKRLQDLAKKISSTLSG 205 + LCK E +N++E P S +K A ++R+K++Q ++ + +S Sbjct: 107 ------EVLCKPDTAE--LNEQEGAGQPSPSTFVDKSKADLEREKQIQQ-TEEDAQQISS 157 Query: 206 LVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 ++ + I KG V ET I I + D+ + F+ S+ + I V+ + EVL Sbjct: 158 VMKEEISKGTVEVETQEQTITIRLKDKGS---FESGSAELNFDFIPVIDMVREVLIGVKG 214 Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 IS+ GHTD P + + NW+LS R+ + + L +G + ++GFA R + Sbjct: 215 NISVEGHTDNIPIESRRFQSNWQLSSARSIAVAEELFATGALDQNRFSVTGFADTRPLVP 274 Query: 324 SDPM--NSANRRIDILV 338 +D + NRR++I++ Sbjct: 275 NDTSANRATNRRVEIVI 291 >gi|148266090|ref|YP_001232796.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146399590|gb|ABQ28223.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 258 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V E TR G+++S+ + FD S+ + +L + E +++ T I + GHTD Sbjct: 125 VSVEITRRGLVVSL---KEVGFFDSGSATVQQNSYGLLAHVAESVSNYTNPIRVEGHTDN 181 Query: 275 SPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 P + NW LS RA + Q L++ D+IS +GF HR IA + Sbjct: 182 VPISSHTFPSNWELSTARATNLVQYLIRYYEFQPDKISA-TGFGEHR-PIADNSTAEGRG 239 Query: 331 -NRRIDILV 338 NRR+DI++ Sbjct: 240 KNRRVDIVL 248 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATD-DDTKKAIEQYFNPFG 73 NL W + YADF+T+L A F+ ++ ++ TD ++ +E FG Sbjct: 12 NLERWLVSYADFITLLFAVFVTLYAMSQTDKKKAEEVVESLRESFG 57 >gi|330904017|gb|EGH34589.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 88 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +LFE T+ G+ I I+D N PMFD S+ P +L + + + +SI GHTDA Sbjct: 15 ILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDA 74 Query: 275 SPF 277 +PF Sbjct: 75 TPF 77 >gi|188586029|ref|YP_001917574.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350716|gb|ACB84986.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 269 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 P E+ + + ++ ++D+ ++ + ++ + V+ ET GI+I D+ + Sbjct: 84 PEPSERQVPSEEEQMMEDIYDQLEDYIEDA---DLAEVVMLETEERGIVIRFQDKI---L 137 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 FD + E++ +L I E+L I + G TD P NW LS RA + Sbjct: 138 FDSGRAELRSESLEILGDIAEILEEIPNEIKVEGFTDDVPIDTPEFPSNWELSAARATTV 197 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILV 338 + L + G + + +G+ +R + +D P N NRR+DI V Sbjct: 198 LRYLSEEGGLDPGRLQATGYGEYRPMVPNDSPENRQLNRRVDITV 242 >gi|258621630|ref|ZP_05716662.1| flagellar motor protein [Vibrio mimicus VM573] gi|262165143|ref|ZP_06032880.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223] gi|258586102|gb|EEW10819.1| flagellar motor protein [Vibrio mimicus VM573] gi|262024859|gb|EEY43527.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223] Length = 319 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 75/340 (22%), Positives = 131/340 (38%), Gaps = 79/340 (23%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L +W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 11 PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70 Query: 82 G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G I ++ P R ID+ + + IT+ ++D + G +++ Q Sbjct: 71 GTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQ------------ 118 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 RDS K L E S +N + + Q AK Sbjct: 119 -----------RDSGK---LTGGQSAESSTQDNQNT--------------QSEMQQQQAK 150 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVV 251 +S + VA++I K + E + I + + Q R F + S+ P+ + Sbjct: 151 AMSEQME-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPL 209 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +++I +++ + + GHTD + R NW LS RA S Q + Sbjct: 210 VRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EME 259 Query: 311 KISGFAHHRLKIA------------SDPMNSANRRIDILV 338 K+ GF H RL++ ++ + NRR++I + Sbjct: 260 KVKGFDHQRLQVRGMADTQPIGPNDTEAQRALNRRVEISI 299 >gi|332534966|ref|ZP_08410784.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] gi|332035584|gb|EGI72076.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] Length = 306 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 130/316 (41%), Gaps = 37/316 (11%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 P L +W +AD M++LM FF+++ + D + ++ K + + K F Sbjct: 10 PPGLPAWMGTFADLMSLLMCFFVLLLAFSEMD------VLKF-----KQIAGSMKFAFGV 58 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 QN E K I T + T Q++ + + + + + + S + Sbjct: 59 QNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAGGRQE 118 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 D G+ +ST E+ S E+ + +++ +L KKI+ L Sbjct: 119 QRGDKRGGE--SRSTSQEQ-------------SSEQATSAADQEQTNELVKKIAQQLEKQ 163 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + D ++ E+ I+I I R F S+ P+ ++Q IG +L I Sbjct: 164 IIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGVLLKDVPGEI 217 Query: 267 SIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++ GHTD N + +NW LS RA + A ++ G ++R+ + G A R + + Sbjct: 218 TVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQTVQGFDKNRM-MVVGRADTRPLVPN 276 Query: 325 DPMNS--ANRRIDILV 338 D NRR++I + Sbjct: 277 DSNEDRRRNRRVEISI 292 >gi|229160692|ref|ZP_04288684.1| OmpA/MotB domain protein [Bacillus cereus R309803] gi|228622707|gb|EEK79541.1| OmpA/MotB domain protein [Bacillus cereus R309803] Length = 226 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ DL KK L V +N + Sbjct: 43 SKMLEKFSDAEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKK----LKAYVDNNGI 98 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ I I+D +FD + PE ++ ++ I + GHT Sbjct: 99 SQVNVYREDTGVSIVIVDNL---IFDTGDASVKPEAKEIISQLVGFFQSVPNPIVVEGHT 155 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 156 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYHVDDKRLAAVGYADTKPVVPNDSPQNWE 215 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 216 KNRRVVIYIKE 226 >gi|157736296|ref|YP_001488979.1| hypothetical protein Abu_0025 [Arcobacter butzleri RM4018] gi|157698150|gb|ABV66310.1| hypothetical protein, OmpA domain [Arcobacter butzleri RM4018] Length = 316 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++ SSIP ++ +++I ++L + + + GHTD+ R A N ++S DRA S Sbjct: 214 FERKSSIPTEQSQNTIKEIAKILNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSV 270 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338 +L+ SGV+E RI I G+ IA D N NRR++ ++ Sbjct: 271 KNILVNSGVNETRIKAI-GYGEE-FPIAKDDENGLSEINRRVEFII 314 >gi|319653376|ref|ZP_08007476.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2] gi|317394860|gb|EFV75598.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2] Length = 265 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 10/178 (5%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 EE + L KEK+ ++ L +L +++++ + N+ + T G+L+SI Sbjct: 91 EEMAAMDELEKEKLKQAADQEELAELQQRVNAFIEN---QNLADKLETSLTTEGLLVSI- 146 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIA-RDNWRL 287 R+ +F S+ + + + +I E+L I I GHTD P RN + NW L Sbjct: 147 --RDNVLFGSGSAEVREQDLNMASEIAELLIMDPPRNIIISGHTDNVPIRNSSFESNWEL 204 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 S+ RA + ++++K+ + + GF + ++ + NRR++IL+ R G Sbjct: 205 SVMRAVNFMKIILKNDQLDPKWFSAKGFGEFQPVAGNNTKEGRAKNRRVEILILPRTG 262 >gi|170727809|ref|YP_001761835.1| flagellar motor protein MotB [Shewanella woodyi ATCC 51908] gi|169813156|gb|ACA87740.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 322 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 56/337 (16%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-------KN 75 D P W +AD M++LM FF+++ + D K I FG K+ Sbjct: 7 DCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNKVEVKD 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + + I E P + + + E IT+ + ++ T +YQ E++ S Sbjct: 67 IPKGTSVIALEFRP------GRPEPTPIETITQQTSEI----TEPVIEYQAGEDDSSGGS 116 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 QQ + + +++ S+D E +E ++E I + Sbjct: 117 QKQQGQQRGGESSATAQEQSVAQSSSDSESEAKAKEESDAQAAAQENI---------NEQ 167 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK++ L+ + D ++ E+ I+I I R F S P V++++ Sbjct: 168 VKKMAQELNTEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFLQPRFKPVVRRV 221 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 GE+L ++++ GHTD N + NW LS RA + L+ K+ G Sbjct: 222 GELLKDVPGIVTVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELI----------KVKG 271 Query: 315 FAHHRLKIA----SDPM--------NSANRRIDILVE 339 F R+K+ SDP+ + NRR++I +E Sbjct: 272 FDPQRMKVVGMANSDPLVANDTSSHRARNRRVEIAIE 308 >gi|254228602|ref|ZP_04922026.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262395023|ref|YP_003286877.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] gi|151938781|gb|EDN57615.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262338617|gb|ACY52412.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] Length = 315 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F + S+ P+ ++++I E++ ++ + GHTD P + R NW Sbjct: 187 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWD 246 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRI 334 LS RA S Q + K+ GF+H RL++ SD + NRR+ Sbjct: 247 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPLLPNDSDENRALNRRV 296 Query: 335 DI 336 +I Sbjct: 297 EI 298 >gi|152976910|ref|YP_001376427.1| flagellar motor protein MotB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025662|gb|ABS23432.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98] Length = 265 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 7/128 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G++I+I++ +FD + PE++ + ++ +L + + I++ GHTD P Sbjct: 138 TEQGLMITILE---NVLFDSGKADVKPESLNIANEMSHLLLSAAPREITVSGHTDNVPIT 194 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N NW LS RA + QVL+++ + +G+ +R ++D + NRR++ Sbjct: 195 NSQFSSNWELSTQRAVNFMQVLLQNKQLDPAKFSATGYGEYRPATSNDTSEGKAKNRRVE 254 Query: 336 ILVEDRQG 343 + + QG Sbjct: 255 VFILPLQG 262 >gi|220934517|ref|YP_002513416.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995827|gb|ACL72429.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 305 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 61/314 (19%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 N +W I Y D +T+L+AFF+VM+ I++ + E + +L+ A + Sbjct: 14 NHEAWAIPYGDLITLLLAFFVVMYAISSVN-------EGKYRVLSDSLVAAFRAPPKSTE 66 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P + + +++ T++ L +G+ + + + L Sbjct: 67 PIQIGEVGRPAPEMEQQQTRSLAPLDLGAAPAQPGV---------------IDRGMDDLL 111 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 RD+E D ++ + + LA +I + L+ Sbjct: 112 RDAELDADELQAA---------------------------AEGMSRLADEIERAMLPLMD 144 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVIS 267 ++++ R I + I NT + S S L E + VLQ++ +L I Sbjct: 145 ADLIR---MRRDRFWIEVEI----NTSLLFASGSAQLSSEAVPVLQRLATILRDFPARIQ 197 Query: 268 IRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + G TD P I NW LS RA S + ++ + R++ I G+ +R +D Sbjct: 198 VEGFTDTVPINTPIFPSNWELSAARAASVVNLFSRNQLDPTRMAAI-GYGEYRPIADNDT 256 Query: 327 MNS--ANRRIDILV 338 NRR+ I+V Sbjct: 257 AEGRRQNRRVSIVV 270 >gi|261417399|ref|YP_003251082.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373855|gb|ACX76600.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327366|gb|ADL26567.1| putative chemotaxis MotB protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 216 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%) Query: 262 STEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 ST+VI + G TD PF + + NW LS +RA + ++L+K G DR+ +GF HR Sbjct: 125 STDVIMVSGFTDDIPFSGSTSYTNWNLSTERAVNVVKMLVKMGFPPDRLFA-AGFGEHRP 183 Query: 321 KIASDP--MNSANRRIDILVEDRQ 342 K +D NRR++I V Q Sbjct: 184 KYPNDSEEHRRLNRRVEIGVTPLQ 207 >gi|126649533|ref|ZP_01721774.1| flagellar motor protein MotB [Bacillus sp. B14905] gi|126593858|gb|EAZ87781.1| flagellar motor protein MotB [Bacillus sp. B14905] Length = 254 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 13/157 (8%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K Q+LA+ I ++ +A N ++G E T G+L++I R++ +FD + PE Sbjct: 90 KDQQELAE-IKDSVDNFIAVNEMEGQFATEMTDEGLLVTI---RDSILFDPGQATIKPEY 145 Query: 249 IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV--- 304 I + +++ VL ++ I I GHTD P N LSL RA + Y VL+ S Sbjct: 146 IPIAKELAGVLVSNPPRNIVITGHTDNVPAGPNFSSNLELSLMRASNFYMVLLDSNSQLK 205 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 SE+ +K G+ +R +D + NRR+++L++ Sbjct: 206 SENFSAK--GYGENRAIAPNDTAEGRAKNRRVEVLIQ 240 >gi|88802157|ref|ZP_01117685.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P] gi|88782815|gb|EAR13992.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P] Length = 278 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 13/128 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEV-ISIRGHTDASPF- 277 +T + ISI D+ + KS S + + VVL+KI +V+ E+ + I GHTD+SP Sbjct: 144 KTVVFISISDK----LLFKSGSYNVTDGAYVVLEKIAKVINDQPEMEVMIEGHTDSSPIK 199 Query: 278 RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM---NSANRR 333 R I +DNW LS RA + ++L K GV +R+ I+ + +A + S NRR Sbjct: 200 REIIQDNWDLSALRATAITRILQYKFGVQPNRL--IAAARSQYVPLAPNDTAENKSKNRR 257 Query: 334 IDILVEDR 341 I++ R Sbjct: 258 TKIIIMPR 265 >gi|254446248|ref|ZP_05059724.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium DG1235] gi|198260556|gb|EDY84864.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium DG1235] Length = 260 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WK+ YADF+T +MA F+V+W + + D+ K+ + +YF M S G+ + Sbjct: 10 GAWKVAYADFVTAMMALFMVLW-LTSQDESLKRDLAKYFQDPYNTPMDNSMGVIESPTEG 68 Query: 91 ERSSQN 96 + SS N Sbjct: 69 QPSSAN 74 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 3/149 (2%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K L ++A++ L+ A+ K V + T G+ +++ D+ P F ++S+ P Sbjct: 87 KVLYEMAQEFMRLLNIDSANPDQKPVDLDVTSDGLRVTLYDRDAHPFFVENSADYTPWGS 146 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSED 307 V++ + ++ ++ + G+ F + W LS DRA S ++L + GV Sbjct: 147 FVIETLAWLVQRHNFMVRVDGYVSEG-FEGDGWEYTAWELSSDRANSTRRLLERYGVRRG 205 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDI 336 + ++ + P AN R+ I Sbjct: 206 QFKSVTSHGNMEPLPFMHPTAEANDRVSI 234 >gi|254519411|ref|ZP_05131467.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA] gi|226913160|gb|EEH98361.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA] Length = 246 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNW 285 II R+ +F+ SSS E+ VL KI ++A I + GHTD P N +R NW Sbjct: 125 IIQLRDNVLFETSSSDLREESKEVLNKINSLIASIDNQILVEGHTDNRPI-NTSRFPSNW 183 Query: 286 RLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 LS DRA + + ++ G R S +G+ + +D + NRR+DIL+ Sbjct: 184 ELSADRAVNVVKYFIEVMGQDPSRFSA-AGYGEYHPVAPNDTYENMAKNRRVDILI 238 >gi|87120689|ref|ZP_01076582.1| flagellar motor protein [Marinomonas sp. MED121] gi|86163917|gb|EAQ65189.1| flagellar motor protein [Marinomonas sp. MED121] Length = 292 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 13/157 (8%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K+ K+ ++ AK+ISS L + I KG V ET I I + ++ + F+ S+ Sbjct: 100 KQVKQTEEDAKQISSVLR----EEISKGTVEVETQERTITIRLKEKGS---FESGSAELN 152 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG 303 + I ++ I +VL I++ GHTD P N R NW+LS RA S + L +G Sbjct: 153 FDFIPIIDMIRDVLIGIQGTIAVEGHTDNIPV-NSGRFGSNWQLSSARAISVAEELFATG 211 Query: 304 VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 E + ++G+A R +D ++NRR+++++ Sbjct: 212 QLEQKRFSVTGYADTRPLAPNDTFFNRASNRRVELII 248 >gi|58582454|ref|YP_201470.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427048|gb|AAW76085.1| MotB protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 286 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 75/319 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ + E + + L +A G +P Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLN-------EGKYKVMAQALTSAFGGSSTAASP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +++G T +L D Sbjct: 67 ---------------------VQLGKTQ--------------------------TLGADY 79 Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202 ++ + + S + LP P+S + R +R D + +++S T Sbjct: 80 DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSKT 139 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ L+ ++ T R L ++ + +F S+ L + VL + Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD P NW LS RA S + GV+ R++ + G+ R + Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252 Query: 322 I--ASDPMNSANRRIDILV 338 +++ +ANRR+ +++ Sbjct: 253 ADNSTEAGRNANRRVVLII 271 >gi|117928060|ref|YP_872611.1| OmpA/MotB domain-containing protein [Acidothermus cellulolyticus 11B] gi|117648523|gb|ABK52625.1| OmpA/MotB domain protein [Acidothermus cellulolyticus 11B] Length = 290 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ D ++I + L A + V F G+++SI+ + +FD + P Sbjct: 130 RETFLDAERRIEAALQ---AKGLADSVKFRVETRGLIVSIVTDQV--LFDTGKADLRPIG 184 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSE 306 VL I VL IS+ GHTD P NW LS RA + + L+ + G+ E Sbjct: 185 RQVLDAIAPVLRGLPNDISVEGHTDNVPITGGPFASNWELSAIRATTVLRYLVSNDGLPE 244 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +R+S +G+A R + +D NRR+DI+V Sbjct: 245 ERMSA-TGYADTRPLVPNDTPEHRQQNRRVDIVV 277 >gi|260767264|ref|ZP_05876205.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] gi|260617772|gb|EEX42950.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] Length = 320 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 65/332 (19%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L +W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 10 PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69 Query: 82 G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G I ++ P R ID+ + + IT+ +++ G ++ QR + L+ Sbjct: 70 GTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQR---DAGQLTGG 126 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q E + T+D++ + + + EE ++ + + Sbjct: 127 QSPE----TATQDNQNTETEMQQQQAQSQSMSEE--------------------METVLE 162 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I L + ++ E I+I I R F + S+ P+ ++++I + Sbjct: 163 SIKKALQREIEQGAIE---VENLGQQIVIRI---REKGAFPEGSAFLQPKFRPLVRQIAD 216 Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ ++ + GHTD + R NW LS RA S Q + K+ GF Sbjct: 217 LVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFN 266 Query: 317 HHRLKIA----SDPMN--------SANRRIDI 336 H RL++ +DP+ S NRR++I Sbjct: 267 HQRLQVRGMADTDPLGPNDTEAQRSRNRRVEI 298 >gi|310644267|ref|YP_003949026.1| ompa/motb domain protein [Paenibacillus polymyxa SC2] gi|309249218|gb|ADO58785.1| OmpA/MotB domain protein [Paenibacillus polymyxa SC2] Length = 271 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 71/318 (22%), Positives = 126/318 (39%), Gaps = 85/318 (26%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD +T+L+ FF+VM+ +++ D D ++++ F+ G +++ GI Sbjct: 21 WMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSLQDTFHK-GDSILEQGSGITG--- 76 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 + D + +KN K ++N+K Sbjct: 77 ------------TADRYTSKNPPATKQPASNKK--------------------------- 97 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 E G K T+ E++ K+E K LQ+L I + Sbjct: 98 ---EAGS--TKLTEREQAFRKQE------------------KELQNLMGVIQE----YIT 130 Query: 209 DNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 DN ++ +F + + GI+I++ D+ +FD+ + + L K+ + IS Sbjct: 131 DNKLQNQIFVSDQPRGIVITLNDRF---LFDQGRAALKQGSANTLSKLASLFRDLKTPIS 187 Query: 268 IRGHTDASPF-----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-- 320 I GHTD PF + +DNW LS RA S + + + +G+A R Sbjct: 188 IEGHTDNIPFTRSSNSSTYKDNWELSGARALSVLRFFIDREQLSPSGFQYAGYADTRPVG 247 Query: 321 KIASDPMNSANRRIDILV 338 +++ NRR++I V Sbjct: 248 DNSTEAGRQKNRRVEITV 265 >gi|153005701|ref|YP_001380026.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029274|gb|ABS27042.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 256 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%) Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L+ + EVL +VI + GHTD P NW LS+ RA + + L +SGV R+ Sbjct: 151 ALRAVAEVLTGVEGKVIRVEGHTDNVPLGRGFATNWDLSVARALAVVRFLQESGVQPSRL 210 Query: 310 SKISGFAHHRLKIASDPM---NSANRRIDILV 338 + +G+ H+ IAS+ S NRRI+I++ Sbjct: 211 A-AAGYGEHQ-PIASNDTPEGRSQNRRIEIVL 240 >gi|313674311|ref|YP_004052307.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312941009|gb|ADR20199.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 315 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 15/164 (9%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 EK+LA K + + L +K+S L +++ E + +S+ +Q +F+ Sbjct: 147 EKVLADK-EAAVNALKQKVSEALLNFKENDLT----VEVKNGKVYVSLAEQ---LLFNSG 198 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN---IARDNWRLSLDRAYSAY 296 S++ + + L+K+ +VL + +V I + GHTD P +DNW LS+ RA S Sbjct: 199 STVVDTKGVEALKKLAQVLKDNQDVNIVVEGHTDDVPISGNNKYLKDNWDLSVLRATSIV 258 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 ++L +G S +R++ +G K ++D NRR +I++ Sbjct: 259 RILTNNGASPERVT-AAGKGEFAPKSSNDSAEGRRENRRTEIIL 301 >gi|206974802|ref|ZP_03235717.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97] gi|222095352|ref|YP_002529412.1| flagellar motor protein mots [Bacillus cereus Q1] gi|206746821|gb|EDZ58213.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97] gi|221239410|gb|ACM12120.1| chemotaxis protein MotB, putative [Bacillus cereus Q1] Length = 225 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KKR+ DL KK L V +N + V TG+ + I+D +FD + PE Sbjct: 78 KKRMDDLYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEA 130 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ K+ I + GHTD+ P N NW LS RA + L++ ED Sbjct: 131 KEIISKLVGFFQSVPNSIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVED 190 Query: 308 RISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + G+A + + +D P N NRR+ I +++ Sbjct: 191 KRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYIKE 225 >gi|315180895|gb|ADT87809.1| sodium-driven polar flagellar protein [Vibrio furnissii NCTC 11218] Length = 320 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 65/332 (19%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L +W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 10 PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69 Query: 82 G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G I ++ P R ID+ + + IT+ +++ G ++ QR + L+ Sbjct: 70 GTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQR---DAGQLTGG 126 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q E + T+D++ + + + EE ++ + + Sbjct: 127 QSPE----TATQDNQNTETEMQQQQAQSQSMSEE--------------------METVLE 162 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I L + ++ E I+I I R F + S+ P+ ++++I + Sbjct: 163 SIKKALQREIEQGAIE---VENLGQQIVIRI---REKGAFPEGSAFLQPKFRPLVRQIAD 216 Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ ++ + GHTD + R NW LS RA S Q + K+ GF Sbjct: 217 LVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFN 266 Query: 317 HHRLKIA----SDPMN--------SANRRIDI 336 H RL++ +DP+ S NRR++I Sbjct: 267 HQRLQVRGMADTDPLGPNDTEAQRSRNRRVEI 298 >gi|188576036|ref|YP_001912965.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520488|gb|ACD58433.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 286 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 75/319 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ + E + + L +A G +P Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLN-------EGKYKVMAQALTSAFGGSSTAASP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +++G T +L D Sbjct: 67 ---------------------VQLGKTQ--------------------------TLGADY 79 Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202 ++ + + S + LP P+S + R +R D + +++S T Sbjct: 80 DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSKT 139 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ L+ ++ T R L ++ + +F S+ L + VL + Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD P NW LS RA S + GV+ R++ + G+ R + Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252 Query: 322 I--ASDPMNSANRRIDILV 338 +++ +ANRR+ +++ Sbjct: 253 ADNSTEAGRNANRRVVLII 271 >gi|116327359|ref|YP_797079.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120103|gb|ABJ78146.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 224 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 L N ++ +SNS+ K+ E + L + +L +S+N+ L + +E L + Sbjct: 11 LLNLVYCVSNSKYESLLKSYEESKLENQRILEEKVNLSRSLNE-----LKRIQEESELRI 65 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + +RL +A S +G + I+ G + + IL + + + + Sbjct: 66 QEYRRL--IATFRSLIDAGKLKIKIIDGRMVVVLSSDILFPV----GSAFLSSAGIASIR 119 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E +L +G + I GHTD +P NW L+ RA + ++K+G+ E Sbjct: 120 EVTTLLASLG------GKRFQIEGHTDDTPTGIKGYTNWELASSRALNVLHTMIKAGMPE 173 Query: 307 DRISKISGFAHHRLKIASDPMN-SANRRIDILV 338 +RIS S A + P N SANRRI+I++ Sbjct: 174 ERISAASMGASRPALPNTSPENRSANRRIEIVI 206 >gi|161521534|ref|YP_001584961.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189352297|ref|YP_001947924.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616] gi|160345584|gb|ABX18669.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189336319|dbj|BAG45388.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616] Length = 219 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F + LP+ + VL++I + L H+ I + GHTD+ P N + NW LS RA Sbjct: 112 LFHVGDAHLLPDALPVLERIAQALGPHAAGDILVEGHTDSVPIANAKYESNWELSSARAG 171 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 + + L + G++ R++ + G A + +A D +S NRR+ I V Sbjct: 172 AVVRYLAERGIAPHRLAAV-GRADTQPLVAGDDASSRARNRRVTIFV 217 >gi|84624345|ref|YP_451717.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368285|dbj|BAE69443.1| MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 324 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 75/319 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W I YAD MT+L+AFF+VM+ I++ + E + + L +A G +P Sbjct: 16 AWAIPYADLMTLLLAFFVVMYAISSLN-------EGKYKVMAQALTSAFGGSSTAASP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +++G T +L D Sbjct: 67 ---------------------VQLGKTQ--------------------------TLGADY 79 Query: 152 EKGKDLCKSTDLEKSINKEENYFLP--------PLSKEKILAMKRKKRLQD-LAKKISST 202 ++ + + S + LP P+S + R +R D + +++S T Sbjct: 80 DRPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVEQQLSKT 139 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ L+ ++ T R L ++ + +F S+ L + VL + Sbjct: 140 LAPLIDKKLI------TIRRNDLWIEVEINSDILFGTGSAALAGNARTTLSTLASVLREA 193 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD P NW LS RA S + GV+ R++ + G+ R + Sbjct: 194 PNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GYGEFRAR 252 Query: 322 I--ASDPMNSANRRIDILV 338 +++ +ANRR+ +++ Sbjct: 253 ADNSTEAGRNANRRVVLII 271 >gi|221210919|ref|ZP_03583899.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221169875|gb|EEE02342.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 218 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F + LP+ + VL++I + L H+T I + GHTD+ P N + NW LS RA Sbjct: 111 LFHVGDAHLLPDALPVLERIAQALGPHATGDILVEGHTDSVPIANAKYESNWELSSARAG 170 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 + + + G++ R++ + G A + +A D +S NRR+ I V Sbjct: 171 AVVRYFAERGIAPHRLAAV-GRADTQPLVAGDDASSRARNRRVTIFV 216 >gi|91229460|ref|ZP_01262927.1| flagellar motor protein [Vibrio alginolyticus 12G01] gi|91187396|gb|EAS73750.1| flagellar motor protein [Vibrio alginolyticus 12G01] Length = 186 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F + S+ P+ ++++I E++ ++ + GHTD P + R NW Sbjct: 58 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWD 117 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------------SDPMNSANRRI 334 LS RA S Q + K+ GF+H RL++ SD + NRR+ Sbjct: 118 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRV 167 Query: 335 DI 336 +I Sbjct: 168 EI 169 >gi|28897464|ref|NP_797069.1| flagellar motor protein MotB [Vibrio parahaemolyticus RIMD 2210633] gi|153840267|ref|ZP_01992934.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|260876424|ref|ZP_05888779.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034] gi|28805676|dbj|BAC58953.1| sodium-driven polar flagellar protein MotB [Vibrio parahaemolyticus RIMD 2210633] gi|149746069|gb|EDM57199.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|308092849|gb|EFO42544.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034] gi|328472526|gb|EGF43389.1| flagellar motor protein MotB [Vibrio parahaemolyticus 10329] Length = 315 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 77/339 (22%), Positives = 133/339 (39%), Gaps = 73/339 (21%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA- 79 D P L W +AD M++LM FF+++ + D K I FG +N + Sbjct: 8 CDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEVK 67 Query: 80 --SKG--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 KG I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 68 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLTG 127 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTD---LEKSINKEENYFLPPLSKEKILAMKRKK 190 + + S S D ++ + S + L +SI K A++R+ Sbjct: 128 GQSPETSTQSNQSAESDMQQQQSEEMSQEMETLMESIKK---------------ALERE- 171 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 I +G + E G I +I R F + S+ P+ Sbjct: 172 --------------------IEQGAI-EVENLGQQI-VIRMREKGAFPEGSAFLQPKFRP 209 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++++I E++ ++ I GHTD + R NW LS RA S Q + Sbjct: 210 LVRQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQ----------EM 259 Query: 310 SKISGFAHHRLKIA------------SDPMNSANRRIDI 336 K+ GF+H RL++ SD + NRR++I Sbjct: 260 EKVRGFSHQRLRVRGMADTEPLVPNDSDENRALNRRVEI 298 >gi|56461234|ref|YP_156515.1| flagellar motor protein MotB [Idiomarina loihiensis L2TR] gi|56180244|gb|AAV82966.1| Flagellar motor protein [Idiomarina loihiensis L2TR] Length = 312 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 54/323 (16%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTA 79 P L W +AD MT+LM FF+++ + D K I N + Sbjct: 18 PPGLPMWMATFADLMTLLMCFFVLLLAFSEMDVLKFKQIAGSMKYALGVQNKIEVKDIPK 77 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + ++ P R I E I + +V++ T Q ++Q E++ + QQ Sbjct: 78 GTSVIAQEFRPGRPEPTPI-----ETIQQQTVEM----TQQMLEFQEGESD---FAGGQQ 125 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +E+G S D +K E + +SKE L ++I Sbjct: 126 -----------TERGGQESDSADDQKEAEAENTEAMTQVSKE-------------LMRRI 161 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L +N +K E + G I II R F + S+ P+ ++Q++ L Sbjct: 162 ERQL-----ENEIKAGTIELEQHGQQI-IIRIREQGSFPEGSAFLQPQFRPIIQQVAGAL 215 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 ++I GH+D I +W LS RA + + ++K SEDR+ + G++ Sbjct: 216 KDIPGEVTISGHSDNEKLVSEIYSSDWDLSSKRAVAVAEEMLKVDDFSEDRLV-VMGYSD 274 Query: 318 HRLKIA--SDPMNSANRRIDILV 338 + + S+ NRR++I + Sbjct: 275 TKPLVPNNSEENRKRNRRVEISI 297 >gi|53721140|ref|YP_110125.1| hypothetical protein BPSS0102 [Burkholderia pseudomallei K96243] gi|167818184|ref|ZP_02449864.1| hypothetical protein Bpse9_23811 [Burkholderia pseudomallei 91] gi|167896649|ref|ZP_02484051.1| hypothetical protein Bpse7_23090 [Burkholderia pseudomallei 7894] gi|167921273|ref|ZP_02508364.1| hypothetical protein BpseBC_22178 [Burkholderia pseudomallei BCC215] gi|52211554|emb|CAH37548.1| OmpA family membrane protein [Burkholderia pseudomallei K96243] Length = 433 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S LPE VL K+ +A Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVA 351 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|172062063|ref|YP_001809715.1| hypothetical protein BamMC406_3023 [Burkholderia ambifaria MC40-6] gi|171994580|gb|ACB65499.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MC40-6] Length = 434 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K+RL +++ LS L+ + I +G++ E R S++ R MF + LP Sbjct: 285 KERLASAPQRLR--LSQLLRNEIARGLVTVDEDDRR----SVVVFRGDSMFASGKRVVLP 338 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVS 305 E +L K+ +A + + GHTD P R+ A DN LS RA Q+L + G Sbjct: 339 EIEPILNKVASEVARVGGNVLVSGHTDNQPIRSAAFADNQVLSEKRAEFVAQILQRDGTP 398 Query: 306 EDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 +RI + G A+ + NRR++I+V Sbjct: 399 AERIRAVGKGDTQPVGDNATAAGRALNRRVEIMV 432 >gi|126444974|ref|YP_001061168.1| hypothetical protein BURPS668_A0162 [Burkholderia pseudomallei 668] gi|126224465|gb|ABN87970.1| SciP protein [Burkholderia pseudomallei 668] Length = 433 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S LPE VL K+ +A Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVA 351 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|237508587|ref|ZP_04521302.1| type IV/VI secretion system protein, DotU family [Burkholderia pseudomallei MSHR346] gi|235000792|gb|EEP50216.1| type IV/VI secretion system protein, DotU family [Burkholderia pseudomallei MSHR346] Length = 439 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S LPE VL K+ +A Sbjct: 302 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 357 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 358 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 417 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 418 VAENATPAGRSRNRRVEIAV 437 >gi|147678453|ref|YP_001212668.1| flagellar motor protein [Pelotomaculum thermopropionicum SI] gi|146274550|dbj|BAF60299.1| flagellar motor protein [Pelotomaculum thermopropionicum SI] Length = 255 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 10/121 (8%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNI 280 G+++S +D +F S+ PE + KIG++L + I + GHTD P R Sbjct: 125 GLVLSFLD---VALFPLGSARLTPEAQETVGKIGKILLKAPNYIRVEGHTDNLPINTREF 181 Query: 281 ARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 NW LS+ RA S Q L+ K +R+S +G+ R ++ +D NRR+D++ Sbjct: 182 P-SNWELSVARATSVVQELIHKLNFPPERLSA-TGYGEFRPRMPNDSAEHRQQNRRVDLV 239 Query: 338 V 338 + Sbjct: 240 I 240 >gi|325954396|ref|YP_004238056.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323437014|gb|ADX67478.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 297 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E +LA +RK + L + IS L G KG+ I +S+ N +F Sbjct: 129 ENLLAQQRKA-IAKLKQSISDALRGFEG----KGITVYEKNGQIYVSM---ENKLLFSTG 180 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF---RNIARDNWRLSLDRAYSAY 296 E I L ++ VL ++ I I GHTD+ P+ + +DNW LS+ RA + Sbjct: 181 KWDVRQEGISALVQLSSVLKKQNDLNILIEGHTDSVPYGAKQGDVQDNWDLSVMRATAVT 240 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI------ASDPMNSANRRIDILV 338 ++L K GV +++ A R K A++ + NRR++I++ Sbjct: 241 KILQKDGVRPTQMT-----AAGRSKYIPIGDNATESGKAKNRRVEIII 283 >gi|195953009|ref|YP_002121299.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932621|gb|ACG57321.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 271 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290 ++T +F S+ P+ +L I ++++ I I G TD +P + NW LS D Sbjct: 121 QDTVLFKSGSADIDPKYYSLLDSIYKIISSLPNPIEIDGFTDNTPIHTLTFPSNWELSTD 180 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSA-NRRIDILVEDRQG 343 RA S + + G +I KI+G+ +H L + P N A NRR++I + + +G Sbjct: 181 RAASVAKYFIFKGFDPSKI-KIAGYGKYHPLVPNTTPQNKAMNRRVEITILNIKG 234 >gi|217423043|ref|ZP_03454545.1| OmpA family protein [Burkholderia pseudomallei 576] gi|254182960|ref|ZP_04889553.1| OmpA family protein [Burkholderia pseudomallei 1655] gi|254264206|ref|ZP_04955071.1| SciP protein [Burkholderia pseudomallei 1710a] gi|254299754|ref|ZP_04967203.1| SciP protein [Burkholderia pseudomallei 406e] gi|157809358|gb|EDO86528.1| SciP protein [Burkholderia pseudomallei 406e] gi|184213494|gb|EDU10537.1| OmpA family protein [Burkholderia pseudomallei 1655] gi|217393951|gb|EEC33971.1| OmpA family protein [Burkholderia pseudomallei 576] gi|254215208|gb|EET04593.1| SciP protein [Burkholderia pseudomallei 1710a] Length = 439 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S LPE VL K+ +A Sbjct: 302 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 357 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 358 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 417 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 418 VAENATPAGRSRNRRVEIAV 437 >gi|167722035|ref|ZP_02405271.1| hypothetical protein BpseD_23689 [Burkholderia pseudomallei DM98] Length = 433 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S LPE VL K+ +A Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 351 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|76818070|ref|YP_336766.1| hypothetical protein BURPS1710b_A1609 [Burkholderia pseudomallei 1710b] gi|126457603|ref|YP_001074182.1| hypothetical protein BURPS1106A_A0139 [Burkholderia pseudomallei 1106a] gi|134280945|ref|ZP_01767655.1| SciP protein [Burkholderia pseudomallei 305] gi|167826573|ref|ZP_02458044.1| hypothetical protein Bpseu9_23060 [Burkholderia pseudomallei 9] gi|167848091|ref|ZP_02473599.1| hypothetical protein BpseB_22661 [Burkholderia pseudomallei B7210] gi|167905011|ref|ZP_02492216.1| hypothetical protein BpseN_22374 [Burkholderia pseudomallei NCTC 13177] gi|167913331|ref|ZP_02500422.1| hypothetical protein Bpse112_22785 [Burkholderia pseudomallei 112] gi|226198766|ref|ZP_03794330.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|242313911|ref|ZP_04812928.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|254189633|ref|ZP_04896143.1| SciP protein [Burkholderia pseudomallei Pasteur 52237] gi|254195529|ref|ZP_04901957.1| SciP protein [Burkholderia pseudomallei S13] gi|76582543|gb|ABA52017.1| OmpA family membrane protein [Burkholderia pseudomallei 1710b] gi|126231371|gb|ABN94784.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|134247967|gb|EBA48051.1| SciP protein [Burkholderia pseudomallei 305] gi|157937311|gb|EDO92981.1| SciP protein [Burkholderia pseudomallei Pasteur 52237] gi|169652276|gb|EDS84969.1| SciP protein [Burkholderia pseudomallei S13] gi|225929206|gb|EEH25229.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|242137150|gb|EES23553.1| OmpA family protein [Burkholderia pseudomallei 1106b] Length = 433 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S LPE VL K+ +A Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVA 351 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|329895993|ref|ZP_08271251.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] gi|328922074|gb|EGG29437.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] Length = 354 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 30/232 (12%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 ST + +Q + ++F Q++ RDS +D +S + N P Sbjct: 148 STQRGRQLDQDTISLFAKVADAQTQVVSEIEIRDS-------SPSDSAESAQSQANAPAP 200 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 P ++ I ++ Q+LA +IS +L V E + I I++ DQ Sbjct: 201 P--EDDIGDSDLEQIRQNLAPEISRSL-----------VNVEMDQDQIKITLADQG---A 244 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYS 294 F S+ PE + +L ++G+ ++ + V+++ GHTD+ P F + NW LS R+ S Sbjct: 245 FVSGSADLRPEFLQLLNRVGDSISDTDGVVTVSGHTDSIPMAFSMRFKSNWDLSAARSAS 304 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDRQG 343 L+ G D + G+A + IA++ + NRRI+I++ D++G Sbjct: 305 VADYLITQGYLGDIEVSVQGYADT-VPIATNDTAEGRAKNRRIEIMI-DKKG 354 >gi|90022860|ref|YP_528687.1| flagellar motor protein MotB [Saccharophagus degradans 2-40] gi|89952460|gb|ABD82475.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 329 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 7/97 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL+++ VLA I ++GHTD P R+ AR NW LS R+ S LM G +R Sbjct: 194 VLKEVKSVLALRQGKIEVQGHTDNVPIRS-ARFGSNWALSSARSVSVAHELMAGGDIAER 252 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 +++G+A + +D + NRR++IL+ +QG Sbjct: 253 RFEVAGYADTMPIVPNDSAENRAINRRVEILI--KQG 287 >gi|167588461|ref|ZP_02380849.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu] Length = 223 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP+ VL +I VL AH I + GHTD+ P + NW LS RA Sbjct: 116 LFNVGDARLLPDASGVLARIAGVLKAHPATSILVEGHTDSVPISTAKYESNWELSSARAG 175 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 + + L++ GV R++ I G A + +A D + NRR+ I V+ Sbjct: 176 AVVRYLVERGVEPHRLAAI-GRADNLPLVAGDDAAARAKNRRVTIFVQ 222 >gi|294084383|ref|YP_003551141.1| flagellar MotB protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663956|gb|ADE39057.1| flagellar MotB protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 384 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 6/91 (6%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSG-VSED 307 ++Q+I EV A + I++ GHTD P F + RDNW L+ RA S Q L SG V + Sbjct: 291 IMQQIAEVSAGGSSSINVSGHTDNVPLIFGSQFRDNWDLAAARASSVVQALEDSGQVPGN 350 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDI 336 R+ +S F ++D + NRRI+I Sbjct: 351 RMQAVS-FGESMPLESNDTAEGRALNRRIEI 380 >gi|78043824|ref|YP_359811.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901] gi|77995939|gb|ABB14838.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901] Length = 266 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 10/121 (8%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G++IS D +F S+ P+ ++++IGE+L I I GHTD P N +R Sbjct: 132 GVVISFKD---AILFKLGSAELTPQAKAIVRQIGEILLPLPNYIRIEGHTDNLPI-NTSR 187 Query: 283 --DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 NW LS RA S L+ R+S + G+ +R K+ S+ NRR+DI+ Sbjct: 188 FPSNWELSTARATSVVHELIDGLHFPPYRLSAV-GYGEYRPKVPNTSEQNRQKNRRVDIV 246 Query: 338 V 338 + Sbjct: 247 I 247 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 24/35 (68%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W I YAD +T+LM FF+VM+ ++ D + +A+ + Sbjct: 16 WLITYADMITLLMVFFIVMYALSNVDANKFRALAE 50 >gi|329894187|ref|ZP_08270142.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] gi|328923212|gb|EGG30533.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] Length = 341 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 6/138 (4%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 +AD I G L E + G I I+ N FD S+ L K+G L+ + + Sbjct: 205 LADEIASG-LAEIEKQGDKI-IVRLANQGSFDSGSATLKNSFGGTLSKLGNTLSRYSGSV 262 Query: 267 SIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323 I GHTD P F + NW LS RA + L+ S + I G+A + L Sbjct: 263 LIEGHTDNVPVGFSERFKSNWDLSASRAAAVADYLLTSTPLQGGSVMIKGYADSKPLDTN 322 Query: 324 SDPMNSA-NRRIDILVED 340 P+ A NRRI+++V+D Sbjct: 323 DSPVGRANNRRIEVIVDD 340 >gi|302389670|ref|YP_003825491.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646] gi|302200298|gb|ADL07868.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646] Length = 248 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + +T ++ +N +KG+ E G+ I I+ +FD + + VL KI Sbjct: 96 ENLENTFQEIINENNLKGIRVEREERGLAIRFIE---GALFDSGKAYLREDARQVLDKIA 152 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + GHTD P N NW LS RA + + + K +S IS Sbjct: 153 PILKKIQRPIRVEGHTDNVPIHNSEFPSNWELSTTRAVNVVRYFIEKHNISPHMISAAGY 212 Query: 315 FAHHRLKIASDPMNSA-NRRIDILV 338 +H + N A NRR+DI++ Sbjct: 213 GEYHPIAPNDSEKNRALNRRVDIII 237 >gi|261856274|ref|YP_003263557.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261836743|gb|ACX96510.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 323 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ + L I+++GHTD P + NW LS RA + Q L+ SGV +R+ Sbjct: 208 LLKRLADRLKAGDYPIAVQGHTDNVPIHTLQFPSNWELSAARAAAVVQELIASGVQPNRL 267 Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDI 336 S I GFA ++D + + NRR+D+ Sbjct: 268 SAI-GFADTHPITSNDTASGRAENRRVDL 295 >gi|308173338|ref|YP_003920043.1| motility protein MotB [Bacillus amyloliquefaciens DSM 7] gi|307606202|emb|CBI42573.1| motility protein B; MotB component of the stator flagellum complex [Bacillus amyloliquefaciens DSM 7] gi|328911414|gb|AEB63010.1| motility protein B; MotB component of the stator flagellum complex [Bacillus amyloliquefaciens LL3] Length = 267 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278 T+ G+LI+I +++ FD ++ E I + ++I +L + I I GHTD P + Sbjct: 137 TKEGLLITI---KDSIFFDSGQAVIRQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIK 193 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N + NW LS+ RA + +L ++ + ++ GF ++ ++ S NRR++ Sbjct: 194 NSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEYKPAASNKTAEGRSKNRRVE 253 Query: 336 ILVEDR 341 +L++ R Sbjct: 254 VLIQPR 259 >gi|94500736|ref|ZP_01307265.1| chemotaxis MotB protein [Oceanobacter sp. RED65] gi|94427058|gb|EAT12039.1| chemotaxis MotB protein [Oceanobacter sp. RED65] Length = 226 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 12/114 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291 ++D S+ P+ + VL ++ +V+ H T ++ + GHTD P NW LS R Sbjct: 111 LYDSGSAAIRPQALPVLNEVTKVIESSVHKTHLVEVEGHTDDVPISTEKFPSNWELSAAR 170 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DPMNSA-NRRIDILV 338 A + + L+ GV ++++ K SG+A R K A D A NRR+ I V Sbjct: 171 ASNVVKYLLGKGVKKEQL-KASGYADSRPKSAPIEGQVMDAQQRAENRRVVIYV 223 >gi|330903399|gb|EGH33971.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 50 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINA 56 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSS 47 >gi|330722438|gb|EGH00277.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC2047] Length = 130 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL + IS+ GHTD+ P ++ R NW LS RA S L K GV Sbjct: 1 MASIRTVLKNVEGKISVEGHTDSVPIATSVFRSNWDLSSARALSVAHELFKGGVLNSNRF 60 Query: 311 KISGFAHHRLKIASD-PMNSA-NRRIDILV 338 ++GFA + +A+D N A NRR++I++ Sbjct: 61 MVTGFADAKPLVANDNAANRAKNRRVEIII 90 >gi|328553736|gb|AEB24228.1| flagellar motor protein MotB [Bacillus amyloliquefaciens TA208] Length = 265 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278 T+ G+LI+I +++ FD ++ E I + ++I +L + I I GHTD P + Sbjct: 135 TKEGLLITI---KDSIFFDSGQAVIRQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIK 191 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N + NW LS+ RA + +L ++ + ++ GF ++ ++ S NRR++ Sbjct: 192 NSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEYKPAASNKTAEGRSKNRRVE 251 Query: 336 ILVEDR 341 +L++ R Sbjct: 252 VLIQPR 257 >gi|254785497|ref|YP_003072926.1| OmpA family protein [Teredinibacter turnerae T7901] gi|237684013|gb|ACR11277.1| OmpA family protein [Teredinibacter turnerae T7901] Length = 305 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F S+ P + ++ +VLA I++ GHTD P RN ++NW LS RA + Sbjct: 113 LFASGSAAPSTAAQQIFNELADVLAPFENAIAVSGHTDNVPIRNQQFQNNWELSAARAVA 172 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRI 334 +L +GV+ +R++ +G+ + +A S +ANRR+ Sbjct: 173 VVNLLAYAGVAPERLAA-TGYGEFQ-PVADNNSAQGRAANRRV 213 >gi|157962805|ref|YP_001502839.1| flagellar motor protein MotB [Shewanella pealeana ATCC 700345] gi|157847805|gb|ABV88304.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 322 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 29/162 (17%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + KK++ L+ + D ++ E+ I+I I R F S P Sbjct: 163 KINEQVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGAFASGSGFLQPRFKP 216 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V++++GE+L ++++ GHTD N + NW LS RA + L+ Sbjct: 217 VVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVGHELI--------- 267 Query: 310 SKISGFAHHRLKI----ASDPM---NSA-----NRRIDILVE 339 K+ GF +R+K+ +SDP+ NS+ NRR++I +E Sbjct: 268 -KVKGFEPNRMKVVGMASSDPLVENNSSANRARNRRVEIAIE 308 >gi|226310457|ref|YP_002770351.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599] gi|226093405|dbj|BAH41847.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599] Length = 269 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFD 238 +EK L +K +DL KK+ + L G + N ++ L + T G+LI+I+D +FD Sbjct: 97 EEKRLEEAVRKETEDL-KKLQTKLDGYIQQNKLQDKLQTKLTDEGLLITILDNA---LFD 152 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ 297 + PE + ++ +L + +++ GHTD P R NW LS R+ + + Sbjct: 153 SGKADLKPEARKLASEMAGMLVPHPKKVTVTGHTDNVPIRRAEFPSNWDLSAKRSVNFLK 212 Query: 298 VLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 VL+++ + + S G H +D + NRR+++ + Sbjct: 213 VLLENKNLDPTKFSATGLGEYHPVAPNTTDEGRAKNRRVEVAI 255 >gi|154244796|ref|YP_001415754.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158881|gb|ABS66097.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2] Length = 340 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 12/117 (10%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEV-------ISIRGHTDASPFRNIA-RDNWR 286 FD+ S+ P PE + L K+ G +L + + I GHTD P NW Sbjct: 225 FFDRGSATPRPEALAELDKLAGAILDLEKSIPPDISWALRIDGHTDNRPIATPQFPSNWE 284 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDR 341 LS RA + Q L+ GVS + +GF ++ ASD + NRRI++ + +R Sbjct: 285 LSAARAIAVVQYLISKGVSPQHLIA-AGFGEYQPIDPAASDEARARNRRIELKLTER 340 >gi|291613031|ref|YP_003523188.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291583143|gb|ADE10801.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 259 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 16/180 (8%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------NIVKGVLFETT 220 ++++E YF K L +R RL ++ +K + ++ L D + VK + Sbjct: 70 LSEQEMYF-------KSLVDRRNARLAEIQRKQNESMQNLAKDLNASMASFVKNGQMNVS 122 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 +TG + + + + +F + + PE + L +VLA + I + GHTD P Sbjct: 123 QTGRGVEL-EINASALFKQGEADIEPEALKTLADAAKVLAGNDFAIEVEGHTDNLPISTP 181 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 NW LS RA S ++ + G++ R+ + + + P A NRR+ I V Sbjct: 182 KFPSNWELSSARASSVVRLFIDQGITAKRLKAVGSADNQPVDSNDTPEGRARNRRVTITV 241 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 24/131 (18%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKK----AIEQYFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+VM+ I++ ++ K ++ Q F GK A +G Sbjct: 16 WMVSYADFITLLFAFFVVMYGISSVNEGKYKVFSVSVNQAFGANGK----AGEG------ 65 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIG--STNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 N I LS E K+ VD + + Q+KQ + ++N L N+ + KN Sbjct: 66 -------NAIHLSEQEMYFKSLVDRRNARLAEIQRKQNESMQNLAKDL-NASMASFVKNG 117 Query: 147 LTRDSEKGKDL 157 S+ G+ + Sbjct: 118 QMNVSQTGRGV 128 >gi|255021344|ref|ZP_05293392.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] gi|254969207|gb|EET26721.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] Length = 279 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/317 (22%), Positives = 123/317 (38%), Gaps = 79/317 (24%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-EQYFNPFGKNLMTASKGIFDEQNPPE 91 W + YADF+T+L AFF+VM+ I++ ++ + + E + F + M+ I QNP E Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSETLVSAFTGHPMS----ITPVQNPAE 71 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + + + KI +T K ++ + Sbjct: 72 SAGPTSV-----LKLPPLPAVAKIAAT---------------------PSVAKGVVSPKA 105 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 + K +TDL++ + K+ L PL ++D + I S+ G+V D Sbjct: 106 QAPKS---NTDLQQ-LQKQMEKLLQPL-------------IRDGSVAIHSSALGVVIDLN 148 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 K +LF + + + PE L I ++L I + G Sbjct: 149 AK-ILFPSGQATL--------------------TPEAQQNLAAIAKILKTVPYQIQVNGF 187 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 T+ P R NW LS RA + ++ + GV+ + + +H + +P N+A Sbjct: 188 TNDLPIRTAQFPSNWYLSAARAVAVTELFIAEGVNPEHLVAAGYGQYHPI----EPNNTA 243 Query: 331 -----NRRIDILVEDRQ 342 NRR+ I+V Q Sbjct: 244 AGLAMNRRVSIVVVAPQ 260 >gi|322421034|ref|YP_004200257.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320127421|gb|ADW14981.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 292 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 21/164 (12%) Query: 191 RLQDL----AKKISSTLSGLVAD---NIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 RLQ L +K S T S L+ + KG V + + ++++D + +FD + Sbjct: 130 RLQKLKEEEVQKTSKTYSDLLEQMKGEMAKGQVTISELKGKLTVNMVD---SVLFDSGKA 186 Query: 243 IPLPETIVVLQKIGEVLAH-STEVISIRGHTD-ASPFRNIAR---DNWRLSLDRAYSAYQ 297 PE +VVLQK+ ++L + +V+ I GHTD +A+ NW LS RA + + Sbjct: 187 EVKPEGLVVLQKVIDILKNIKDKVVRIEGHTDNVQIVGQLAKRYPTNWELSAARAINVTR 246 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 L + G+ ++ ++ + H+ +A +D + NRRI+I++ Sbjct: 247 YLQQQGLDPALLAAVA-YGEHK-PVAPNDTDEGRAKNRRIEIVL 288 >gi|153002898|ref|YP_001377223.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026471|gb|ABS24239.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 510 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 8/112 (7%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286 ++ R FD + PE+ +L +I +VLA E+ + I GH+D+S A N R Sbjct: 397 VELREKVQFDTGKATIKPESAGLLDEIAKVLAEHAEITRVVIEGHSDSS---GGAALNKR 453 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 LS RA + + L++ G++++R+S GF R ++D ANRR++I Sbjct: 454 LSQARADAVLKALVERGIAKERLSA-KGFGPSRPIASNDTPEGREANRRVEI 504 >gi|90415360|ref|ZP_01223294.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] gi|90332683|gb|EAS47853.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] Length = 408 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 4/93 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L K+GE + + +I+I GHTD P F R NW LS R+ + L+ S +D Sbjct: 314 LLDKVGESITDGSSLITIEGHTDNIPMAFSERFRSNWDLSAARSAAVADYLLNSSEIDDG 373 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 ++G A + + +D S NRRI+++++ Sbjct: 374 RVSVTGLADTKPLVPNDSPEGRSKNRRIEVIID 406 >gi|83647833|ref|YP_436268.1| flagellar motor protein MotD [Hahella chejuensis KCTC 2396] gi|83635876|gb|ABC31843.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 260 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +RL+++A + + L GL+ +V I +S+ RN +F+ ++P+ Sbjct: 104 ERLREIANRFNYRLKGLIGQGMVS---INENDNWIELSL---RNNLLFNSGDAVPVDAAF 157 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ I +L I + G TD P R+ A NW LS R+ + ++L+ GV R Sbjct: 158 NLIDGIAGILKDYPNAILVEGFTDNVPIRSSAYPSNWELSSARSAAVARLLIIGGVDPRR 217 Query: 309 ISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 ++ + G+ ++ +D NRR+ +LV Sbjct: 218 LAAV-GYGEYQPVARNDTSEGRQRNRRVVLLV 248 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ +++ ++ K + + Sbjct: 17 WLVSYADFITLLFAFFVVMYSVSSVNEGKYKVLSE 51 >gi|269103244|ref|ZP_06155941.1| Flagellar motor rotation protein MotB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163142|gb|EEZ41638.1| Flagellar motor rotation protein MotB [Photobacterium damselae subsp. damselae CIP 102761] Length = 314 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/330 (22%), Positives = 134/330 (40%), Gaps = 77/330 (23%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG-KNLMTAS---KG--IF 84 +W +AD T+LM FF+++ + D K I N FG +NL+ + KG + Sbjct: 14 AWMATFADLATLLMCFFVLLLSFSEMDVMKFKQIAGSMKNAFGVQNLLDINDIPKGTSVI 73 Query: 85 DEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 ++ P R I++ + + I T+ ++D G +++ +R L+ Q + Sbjct: 74 AQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHEGESDKAGGTERSAGT---LTGGQADKK 130 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K + D K LEK +NK A++R+ Sbjct: 131 NKTQQQDQDQNASDSLKQ--LEKVLNK---------------AIERE------------- 160 Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 I +G V E ++I I +Q F + S+ P+ +++++ ++ Sbjct: 161 --------IEEGNVEIENFGQQLVIRIKEQG---AFPEGSAFLQPKFRPLVRQVASLVKD 209 Query: 262 STEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I GHTD P + + R NW +S RA S Q ++K++GF HR+ Sbjct: 210 VPGTVRISGHTDDRPVESELYRSNWDISAQRAVSVAQ----------EMAKVTGFDQHRM 259 Query: 321 KIA----SDPMNS--------ANRRIDILV 338 ++ + P+ S NRR++I + Sbjct: 260 QVVGLADTAPIASNDTAEGRKRNRRVEISI 289 >gi|239813534|ref|YP_002942444.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus S110] gi|239800111|gb|ACS17178.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus S110] Length = 442 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285 S++ R F S+ P+ ++ VL++IG+ LA + I GH+D P R++ NW Sbjct: 315 SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGEVLITGHSDNQPIRSLRYPSNW 374 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 LS RA A + + + V R+ + G A A+D P N A NRR+DI++ Sbjct: 375 HLSAARA-DAVKGALTTLVEPARM-RSDGKADAEPVAANDTPANRARNRRVDIVL 427 >gi|229155299|ref|ZP_04283410.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] gi|228628224|gb|EEK84940.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] Length = 213 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D+E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 30 SKMLEKFSDVEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 85 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + IID +FD + PE ++ ++ I + GHT Sbjct: 86 SQVNVYREDTGVSVVIIDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 142 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 143 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 202 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 203 KNRRVVIYIKE 213 >gi|323495111|ref|ZP_08100198.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546] gi|323310662|gb|EGA63839.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546] Length = 314 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/334 (21%), Positives = 131/334 (39%), Gaps = 67/334 (20%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 11 PPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70 Query: 82 G--IFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G I ++ P R ID+ + + IT+ +++ G +++ QR + ++ Sbjct: 71 GTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDKGSL----TG 126 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 QS ++SE + +S ++ + L+ L + Sbjct: 127 GQSPDTSTQNNQNSESDNEQQQSAEM-------------------------SQELETLME 161 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I L + ++ E I I I R F + S+ P+ ++++I + Sbjct: 162 SIKKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAD 215 Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ V+ + GHTD + R NW LS RA S Q + K+ GF Sbjct: 216 LVKDIPGVVRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQ----------EMEKVRGFN 265 Query: 317 HHRLKIA----SDPMN--------SANRRIDILV 338 H RL++ ++P+ S NRR++I + Sbjct: 266 HERLRVRGMADTEPLGPNDTEAQRSRNRRVEISI 299 >gi|39998119|ref|NP_954070.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA] gi|39985064|gb|AAR36420.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA] Length = 266 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 R G+++S+ + FD S+I +L K+ E L+ + + + GHTD P ++ Sbjct: 135 RRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESLSAYSNPVRVEGHTDTMPISSV 191 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDI 336 NW LS RA + L +S + +GF +R IA + S NRR+DI Sbjct: 192 QFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEYR-PIADNNTAEGRSKNRRVDI 250 Query: 337 LVEDRQG 343 ++ +G Sbjct: 251 VLLSGEG 257 >gi|229138428|ref|ZP_04267017.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] gi|228644965|gb|EEL01208.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] Length = 213 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK KKR+ DL KK L V +N + Sbjct: 30 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKK----LKAYVDNNGI 85 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ K+ I + GHT Sbjct: 86 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 142 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 143 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 202 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 203 KNRRVVIYIKE 213 >gi|229172375|ref|ZP_04299934.1| OmpA/MotB domain protein [Bacillus cereus MM3] gi|228610846|gb|EEK68109.1| OmpA/MotB domain protein [Bacillus cereus MM3] Length = 227 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 11/188 (5%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 L K +D+E+ K +P +S EK M KKR+ +L KK L V +N + V Sbjct: 47 LEKFSDVEQVDAKVMENTIPDISHEKNDEKMVSKKRMDELYKK----LKAYVDNNGISQV 102 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 TG+ + I+D +FD + PE ++ ++ I + GHTD+ Sbjct: 103 NVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSR 159 Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANR 332 P N NW LS RA + L++ +D+ G+A + + +D P N NR Sbjct: 160 PIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNR 219 Query: 333 RIDILVED 340 R+ I +++ Sbjct: 220 RVVIYIKE 227 >gi|94500546|ref|ZP_01307077.1| flagellar motor protein [Oceanobacter sp. RED65] gi|94427336|gb|EAT12315.1| flagellar motor protein [Oceanobacter sp. RED65] Length = 331 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 53/320 (16%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA--SKGIFDE 86 L +W + D M++LM FF+++ D Q F L A + Sbjct: 15 GLPAWLATFGDLMSLLMCFFVLLLSFAQMD-------AQKFKRLAGELRMAFGVQTTIRA 67 Query: 87 QNPPERSS--QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 +PP+ +S SI E N + K Q S C+ Sbjct: 68 DDPPKGTSVIAKHFSPSIPEPTPINEIRQKTSDVTQ----------------SSLEVLCQ 111 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +++T +E + K T E ++ KE + +K+ + A++ + L+ Sbjct: 112 DAITAQTEAKGNTGKQTR-EITVPKES---------------ESQKKQAEQAEETAFELA 155 Query: 205 GLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + I KG V ET + I+I I R F+ + E + VL I EVL Sbjct: 156 TELEREISKGQVELETQGSKIVIRI---REKGSFNAGGAYVEDEFLPVLDTIREVLVEVP 212 Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 IS+ GHTD++P R NW LS RA + + L + + ++ G R Sbjct: 213 GRISVEGHTDSTPLGRGGRYNSNWELSAARAAAVAEYLFIAPEMPESRFRVVGHGSVR-P 271 Query: 322 IASDPM---NSANRRIDILV 338 +A + + NRR++I+V Sbjct: 272 VAENKTAEGRAKNRRVEIIV 291 >gi|217959212|ref|YP_002337760.1| flagellar motor protein MotS [Bacillus cereus AH187] gi|217063689|gb|ACJ77939.1| putative chemotaxis protein MotB [Bacillus cereus AH187] Length = 225 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK KKR+ DL KK L V +N + Sbjct: 42 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKK----LKAYVDNNGI 97 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ K+ I + GHT Sbjct: 98 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHT 154 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 155 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|289208360|ref|YP_003460426.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943991|gb|ADC71690.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 305 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294 +F S+ PE +L ++G +LA + + GHTD P + + NW LS RA + Sbjct: 163 LFGSGSATLNPEARSLLDEVGAILAPRVSRVHVEGHTDNVPIQTAVYPSNWELSSGRAAA 222 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 V +G+ + + G+ HR ++D + NRR+ I+V Sbjct: 223 VVSVFEDAGIEPKNLVAL-GYGEHRPVASNDTEQGRAENRRVAIVV 267 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +W I Y D +T+L+AFF+VM+ I++ DD + + + Sbjct: 15 AWAIPYGDLVTLLLAFFVVMYAISSVDDGKYRVLSE 50 >gi|311106778|ref|YP_003979631.1| motility protein B 2 [Achromobacter xylosoxidans A8] gi|310761467|gb|ADP16916.1| motility protein B 2 [Achromobacter xylosoxidans A8] Length = 320 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLD 290 N +F + P + V++++ +L + +S+ GH+D P R A NW LS Sbjct: 189 NELLFPSGQATLSPTGLDVIKRLAAILNKNEYQVSVEGHSDPVPIQTRQFA-SNWELSSS 247 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 RA S + L++ GVS R+ + G+A R ++D +ANRR++++++ Sbjct: 248 RATSVLRELVRDGVSAQRLRAV-GYAETRPIESNDTQAGRAANRRVELIMD 297 >gi|291336864|gb|ADD96396.1| OmpA/MotB domain containing protein [uncultured organism MedDCM-OCT-S09-C206] Length = 211 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKIS-GFAHHRLK 321 I++ GHTD P +N RDNW L+ RA S Q + ++G + DR+S +S G Sbjct: 133 TITVTGHTDDVPIKNAQFRDNWDLAAGRASSVVQAIQRTGLIDGDRLSAVSKGETAPLAD 192 Query: 322 IASDPMNSANRRIDILV 338 A+ S NRRI+I + Sbjct: 193 NATAAGRSENRRIEIEI 209 >gi|295704127|ref|YP_003597202.1| chemotaxis protein MotB [Bacillus megaterium DSM 319] gi|294801786|gb|ADF38852.1| chemotaxis protein MotB [Bacillus megaterium DSM 319] Length = 277 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 62/314 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SW + Y+D +T+L+A F+V++ +++ D K + + FN G+ + Q+ Sbjct: 17 SWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAFVGGTGVMEFQS--- 69 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 L E + S ST + + + N QS SLT S Sbjct: 70 --------LQESEEAVQPSNTPAAKSTKKTNEVETAPN---------QSPASSQSLT--S 110 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E+ + + D E+ LQ + KI++ + N+ Sbjct: 111 EQKEQTIREADQEE--------------------------LQQIQSKINAYIQ---KKNL 141 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 + T G+LISI R+ +FD + E + I E+L I I G Sbjct: 142 TNQLQTSLTEEGLLISI---RDNVLFDSGRAQVRSEDTKIANDISELLVIDPPRNIIISG 198 Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327 HTD P RN NW LS+ RA + +V++K+ + GF + +++ Sbjct: 199 HTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLSPSMFSAKGFGEFKPVTSNNTAEG 258 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ R Sbjct: 259 QAKNRRVEILITPR 272 >gi|86160609|ref|YP_467394.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85777120|gb|ABC83957.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 248 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 10/128 (7%) Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 + ET RT G+L+ + + +FD SS PE I L+++G++LA + + I I G+T Sbjct: 122 IAETKRTENGLLV---EMKGDILFDSGSSALKPEAIGKLEQMGDILAKYGDDRIRIEGYT 178 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSAN 331 D++ +++ N LSL RA + +VL+ GV E +I+ + G S + N Sbjct: 179 DSTGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITALGMGPVRPVADNGSATGRAQN 235 Query: 332 RRIDILVE 339 RR+++ ++ Sbjct: 236 RRVELHID 243 >gi|320157195|ref|YP_004189574.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O] gi|319932507|gb|ADV87371.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O] Length = 300 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F + S+ P+ ++++I E++ ++ I GHTD + R NW Sbjct: 169 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 228 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPM--------NSANRRI 334 LS RA S Q + K+ GF+H RL++ +DP+ + NRR+ Sbjct: 229 LSAQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTDPLVDNDTEENRARNRRV 278 Query: 335 DI 336 +I Sbjct: 279 EI 280 >gi|323435973|ref|ZP_01049351.2| OmpA family protein [Dokdonia donghaensis MED134] gi|321496288|gb|EAQ39323.2| OmpA family protein [Dokdonia donghaensis MED134] Length = 547 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 9/108 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S+ + + L + L + E+ I+I HTDA + A N RLS+ RA S Sbjct: 440 LFDLDSAKIKEISTITLNTVVATLKANPELKIAINAHTDA---QGSASYNKRLSMRRAAS 496 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDILV 338 A + L+ G+S+DR+S GF +L I + N NRRI+ +V Sbjct: 497 AMEYLLSKGISKDRLSS-QGFGEEQLLINCTSCTPQENELNRRIEFVV 543 >gi|34497269|ref|NP_901484.1| flagellar motor protein MotD [Chromobacterium violaceum ATCC 12472] gi|34103125|gb|AAQ59488.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472] Length = 277 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 8/151 (5%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L L + ++ LS LV V + GI I I R++ +F ++P +++ Sbjct: 102 KLGQLTQNLAKALSPLVQSG---EVTITQSNQGIHIDI---RDSALFAVGQAVPNQQSMP 155 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++ + ++LA I + G TD +P R + NW LS RA ++ +SGV R+ Sbjct: 156 LMSNMAKLLAGVDNAIKVEGFTDDAPIRTPVFPSNWELSAARAGGVVRLFQESGVDPQRL 215 Query: 310 SKISGFAHHRLK-IASDPMNSANRRIDILVE 339 + A+ + A+ + NRR+ I V+ Sbjct: 216 VAVGHGANQPVADNATADGRARNRRVTISVQ 246 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ + + + + I + PP Sbjct: 18 WLVSYADFITLLFAFFVVMYAISSLNEGKYRVMSSAI----MDAFRSGTTITVQTTPPTG 73 Query: 93 SSQNKIDLSIDEHITKNSV 111 + I++ + I K++ Sbjct: 74 GANTMIEIPQTKPIAKSTA 92 >gi|294498805|ref|YP_003562505.1| chemotaxis protein MotB [Bacillus megaterium QM B1551] gi|294348742|gb|ADE69071.1| chemotaxis protein MotB [Bacillus megaterium QM B1551] Length = 277 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 62/314 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SW + Y+D +T+L+A F+V++ +++ D K + + FN G+ + Q+ Sbjct: 17 SWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAFVGGTGVMEFQS--- 69 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 L E + S ST + + + N QS SLT S Sbjct: 70 --------LQESEEAVQPSNTPAAKSTEKTNEVETAPN---------QSPASSQSLT--S 110 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E+ + + D E+ LQ + KI++ + N+ Sbjct: 111 EQKEQTIREADQEE--------------------------LQQIQSKINAYIK---KKNL 141 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 + T G+LISI R+ +FD + E + I E+L I I G Sbjct: 142 TNQLQTSLTEEGLLISI---RDNVLFDSGRAQVRSEDTKIANDISELLVIDPPRNIIISG 198 Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327 HTD P RN NW LS+ RA + +V++K+ + GF + +++ Sbjct: 199 HTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLNPSMFSAKGFGEFKPVTSNNTAEG 258 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ R Sbjct: 259 QAKNRRVEILITPR 272 >gi|254473145|ref|ZP_05086543.1| OmpA/MotB [Pseudovibrio sp. JE062] gi|211957866|gb|EEA93068.1| OmpA/MotB [Pseudovibrio sp. JE062] Length = 344 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307 +L+ G++ V+ + GHTDA P R DNW LS RA S + L+ GV D Sbjct: 250 AILELEGQIPDEINWVLRVDGHTDARPLSGTGRLRDNWELSAARAISVVKYLISKGVEPD 309 Query: 308 RISKISGFAHHR--LKIASDPMNSANRRIDILVEDR 341 R+ +GF + + +D + NRRI++ + R Sbjct: 310 RLVA-AGFGEFQPLEEGTTDEAYAKNRRIELKLTQR 344 >gi|226944839|ref|YP_002799912.1| flagellar motor protein [Azotobacter vinelandii DJ] gi|226719766|gb|ACO78937.1| Flagellar motor protein [Azotobacter vinelandii DJ] Length = 275 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 4/95 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VLQ++ VL S I + GHTD+ P R+ NW LS RA S + L +GV+ R+ Sbjct: 175 VLQQLVPVLNSSRHDIVVVGHTDSLPIRSTRFPSNWELSGARAGSVVRYLEANGVARQRM 234 Query: 310 SKISGFAHHR--LKIASDPMNSANRRIDILVEDRQ 342 + G A R L+ +S + NRR+++++E Q Sbjct: 235 RAV-GLADTRPLLENSSPEGRAGNRRVELILETPQ 268 >gi|95929859|ref|ZP_01312600.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] gi|95134155|gb|EAT15813.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] Length = 246 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +Q L +I + ++ L D +K V R +++ I D + +F SS P V Sbjct: 82 VQRLYTRIMTQMNRLRMDPSIKVV---KDRGAVILQIND---SILFAPGSSTLKPAAFPV 135 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRIS 310 L K+ E++ I GHTD PF NW LS+ R+ S + K+ + +R+S Sbjct: 136 LAKVAELIRPLPLSARIEGHTDDIPFGRADMSNWDLSVARSVSVLKYFQKNDLLPLNRMS 195 Query: 311 KISGFAHHRLKIASDPMNSA-NRRIDILVE 339 + A L P N A NRR++ ++E Sbjct: 196 AVGYGAEKPLVPNDSPENRAKNRRVEFVLE 225 >gi|242280858|ref|YP_002992987.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242123752|gb|ACS81448.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 250 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++ K KK + L I + +S A + K + T + G+L+ + + +F ++ Sbjct: 92 VSAKAKKDMHALEVDIRAFIS---AGKMEKLMAVNTDQQGVLVRVPTR---AIFKPGTAQ 145 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ-VLMK 301 P+ V+L K+ ++ + +RGHTD +N I NW LS RA S + +L K Sbjct: 146 INPKATVLLDKVASIMKKKDFNLVVRGHTDDRATKNNIYSSNWELSAARAASCLRYILKK 205 Query: 302 SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339 SGVS R+ + G+A + + S+ + NRR++ + Sbjct: 206 SGVSSKRLKAV-GYAGTKPLVPNTSNRNRAINRRVEFYYQ 244 >gi|319791244|ref|YP_004152884.1| type IV / vi secretion system protein, dotu family [Variovorax paradoxus EPS] gi|315593707|gb|ADU34773.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus EPS] Length = 454 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285 S++ R F S+ P+ ++ VL++IG+ LA + I GH+D P R++ NW Sbjct: 316 SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGDVLITGHSDNQPIRSLRYPSNW 375 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 LS RA A + + + V R+ + G A A+D P N A NRR+DI++ Sbjct: 376 HLSAARA-DAVKGALTTLVDPARM-RSDGKADAEPVAANDTPANRARNRRVDIVL 428 >gi|298206940|ref|YP_003715119.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] gi|83849574|gb|EAP87442.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] Length = 321 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E ++A K K +Q L +SS L D KG+ E + +S+ N +F+ Sbjct: 153 ESVIAAKEAK-MQALKTAVSSAL----GDFEGKGLTVEQRNGKVYVSM---ENKLLFNSG 204 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S E + ++GEVLA + ++ + I GHTD P+ +DNW LS RA S Sbjct: 205 SWAVGSEGRRAVNQLGEVLASNPDIAVLIEGHTDNVPYGGNGPLQDNWDLSTKRATSIVN 264 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 +L ++ + + +G + L IAS+ + NRRI++++ Sbjct: 265 ILRENSQIDPQNLTAAGRGEY-LPIASNDSATGKAKNRRIEVIL 307 >gi|172064681|ref|YP_001812331.1| DotU family type IV/VI secretion system protein [Burkholderia ambifaria MC40-6] gi|171998166|gb|ACB69082.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MC40-6] Length = 436 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + + +G+L E R S++ + MF S LP L K+G +A Sbjct: 297 LSYLLRNEVARGLLTVDEDDRR----SVVVFKGDSMFASGQSTVLPVVEPALGKVGGEVA 352 Query: 261 HSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHH 318 + +RGHTD P R+ + N LS RA Q+L + G DRI I G Sbjct: 353 RVGGSVLVRGHTDNQPIRSAVFPSNLVLSEKRAAYVAQILQQRGTPADRIHAIGKGDTQP 412 Query: 319 RLKIASDPMNSANRRIDILV 338 A+ + NRR++I+V Sbjct: 413 VGDNATAAGRALNRRVEIVV 432 >gi|254491758|ref|ZP_05104937.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224463236|gb|EEF79506.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 306 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 10/147 (6%) Query: 197 KKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K+++ LSG +AD I + V+ + + + I ++ +F+ + + V+ KI Sbjct: 113 KELTKQLSGALADMIETEDVIIKQGEDWLELEI---KSRVLFESGEARLERAAVPVIGKI 169 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++L S I + G TD +P N +R NW LS RA S +L + G+ DR+S I Sbjct: 170 ADILQTSANPIQVEGFTDNNPI-NTSRFPSNWELSAARAASVVHLLDRYGIQPDRMSAI- 227 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILV 338 G+ ++ A++ NRR+ ++V Sbjct: 228 GYGEYKPIADNATEEGRQKNRRVVLVV 254 >gi|169831941|ref|YP_001717923.1| OmpA/MotB domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638785|gb|ACA60291.1| OmpA/MotB domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 257 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 20/155 (12%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +K++Q+L ++ +GL A + T G++ISI D T +F S+ P Sbjct: 105 QKQVQELMEE-----AGLTAH-----IEMTTEERGLVISIQD---TVLFATGSADLTPTA 151 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVS 305 ++ K+G +L + I I GHTD P N R NW LS R+ S + L+ + Sbjct: 152 REIMDKLGLILLQTPNYIRIEGHTDNVPI-NTPRFPSNWELSAARSTSVVRYLIARHNFP 210 Query: 306 EDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 +R+S +G+ +R + +D NRR+D +V Sbjct: 211 PERLSA-TGYGEYRPRDTNDTAQGRQRNRRVDFVV 244 >gi|45658882|ref|YP_002968.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602127|gb|AAS71605.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 223 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPL------PETIVVLQKIGEVLAH-STEVISIRGHTDASPFR 278 I IID R + P+ P ++++ +LA + I GHTD +P Sbjct: 85 IKIIDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTG 144 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337 NW L+ RA + ++K+G+ E RIS S A + P N S+NRRI+I+ Sbjct: 145 IKGYTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIV 204 Query: 338 V 338 + Sbjct: 205 I 205 >gi|30261729|ref|NP_844106.1| flagellar motor protein MotS [Bacillus anthracis str. Ames] gi|47526945|ref|YP_018294.1| flagellar motor protein MotS [Bacillus anthracis str. 'Ames Ancestor'] gi|49184555|ref|YP_027807.1| flagellar motor protein MotS [Bacillus anthracis str. Sterne] gi|165869455|ref|ZP_02214114.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488] gi|167633407|ref|ZP_02391732.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442] gi|167639130|ref|ZP_02397403.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193] gi|170686155|ref|ZP_02877377.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465] gi|170706447|ref|ZP_02896907.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389] gi|177650324|ref|ZP_02933291.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174] gi|190566282|ref|ZP_03019200.1| putative chemotaxis protein MotB [Bacillus anthracis Tsiankovskii-I] gi|218902843|ref|YP_002450677.1| putative chemotaxis protein MotB [Bacillus cereus AH820] gi|225863587|ref|YP_002748965.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102] gi|227815517|ref|YP_002815526.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684] gi|229604338|ref|YP_002866130.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248] gi|254683216|ref|ZP_05147077.1| flagellar motor protein MotS [Bacillus anthracis str. CNEVA-9066] gi|254723805|ref|ZP_05185591.1| flagellar motor protein MotS [Bacillus anthracis str. A1055] gi|254734568|ref|ZP_05192280.1| flagellar motor protein MotS [Bacillus anthracis str. Western North America USA6153] gi|254740977|ref|ZP_05198665.1| flagellar motor protein MotS [Bacillus anthracis str. Kruger B] gi|254755218|ref|ZP_05207252.1| flagellar motor protein MotS [Bacillus anthracis str. Vollum] gi|254759755|ref|ZP_05211779.1| flagellar motor protein MotS [Bacillus anthracis str. Australia 94] gi|30255957|gb|AAP25592.1| putative chemotaxis protein MotB [Bacillus anthracis str. Ames] gi|47502093|gb|AAT30769.1| putative chemotaxis protein MotB [Bacillus anthracis str. 'Ames Ancestor'] gi|49178482|gb|AAT53858.1| chemotaxis protein MotB, putative [Bacillus anthracis str. Sterne] gi|164714895|gb|EDR20413.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488] gi|167512920|gb|EDR88293.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193] gi|167531445|gb|EDR94123.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442] gi|170128545|gb|EDS97412.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389] gi|170669852|gb|EDT20593.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465] gi|172083468|gb|EDT68528.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174] gi|190562417|gb|EDV16384.1| putative chemotaxis protein MotB [Bacillus anthracis Tsiankovskii-I] gi|218535723|gb|ACK88121.1| putative chemotaxis protein MotB [Bacillus cereus AH820] gi|225787259|gb|ACO27476.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102] gi|227002562|gb|ACP12305.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684] gi|229268746|gb|ACQ50383.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248] Length = 225 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 42 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 97 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 98 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 154 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 155 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|146277438|ref|YP_001167597.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555679|gb|ABP70292.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 367 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 9/164 (5%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 PP+ E+ A+++ R + ++ + L VA+ +VK E + +S+ + Sbjct: 204 PPVGGEQGAALRKSVRAELDTLRLRNALDREVAEGLVK---VEQMDGKVFVSLGAGGS-- 258 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 F S + + V+ +I E H I++ GHTD P A RDN L+ RA S Sbjct: 259 -FTSGSDVLSEDARAVMSRIAEATQHPERTITVTGHTDNVPVAGGAFRDNIALAAGRAAS 317 Query: 295 AYQVLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 + L+ + GV RI+ +S G A++ + NRRI+I Sbjct: 318 VVRELVATGGVDPGRITAVSRGEFDPVADNATEAGRTQNRRIEI 361 >gi|89100104|ref|ZP_01172973.1| flagellar motor protein [Bacillus sp. NRRL B-14911] gi|89085194|gb|EAR64326.1| flagellar motor protein [Bacillus sp. NRRL B-14911] Length = 229 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%) Query: 187 KRKKRLQDLAKKISSTL--SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + ++RL++L +++ L +GL D IV T G+++ + +Q +F+ + Sbjct: 71 QEEERLENLLQEVEGYLEKNGL-EDVIVAN----RTERGVVLVLQEQV---LFESGEAEI 122 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG 303 + L K+G +L ++ + GHTD P NW LS RA S + L +G Sbjct: 123 IDRNSGFLDKVGSLLVGMPNLVKVEGHTDNRPIATYRYPSNWELSAARASSVIRYLAGTG 182 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 V R + G+ R + +D + NRR+++++ D Sbjct: 183 VDSKRFIAV-GYGDTRPLVPNDSAENLEKNRRVEVIISD 220 >gi|49480957|ref|YP_035848.1| flagellar motor protein MotS [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143729|ref|YP_083099.1| flagellar motor protein MotS [Bacillus cereus E33L] gi|196033392|ref|ZP_03100804.1| putative chemotaxis protein MotB [Bacillus cereus W] gi|196039124|ref|ZP_03106431.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99] gi|196045046|ref|ZP_03112279.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108] gi|49332513|gb|AAT63159.1| chemotaxis motB protein, OmpA family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977198|gb|AAU18748.1| chemotaxis motB protein, OmpA family [Bacillus cereus E33L] gi|195993826|gb|EDX57782.1| putative chemotaxis protein MotB [Bacillus cereus W] gi|196024048|gb|EDX62722.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108] gi|196030269|gb|EDX68869.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99] Length = 225 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 42 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 97 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 98 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 154 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 155 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|153003419|ref|YP_001377744.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026992|gb|ABS24760.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 205 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 10/128 (7%) Query: 216 LFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 + ET RT GIL+++ +N +FD +S+ E + L ++G++LA ++ + I I GHT Sbjct: 79 VAETKRTENGILVNM---KNDILFDTNSADLKGEAVTQLTQVGDILAKYADDRIRIEGHT 135 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSAN 331 D+S ++ N LS RA S VL+ GV E++I+ + G A+ + N Sbjct: 136 DSSGSDSL---NEALSRKRADSVRTVLVSRGVREEQITVVGNGETKPIADNATKEGRAKN 192 Query: 332 RRIDILVE 339 RR+++ ++ Sbjct: 193 RRVELHID 200 >gi|91776302|ref|YP_546058.1| OmpA/MotB [Methylobacillus flagellatus KT] gi|91710289|gb|ABE50217.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 267 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235 PLS+ L +R+++ Q+ + +TL+ + + G + T G+ I I D Sbjct: 94 PLSR---LQKERQRKEQESISAMIATLNRALGNLATNGKISISKTSLGVRIDIAD---GV 147 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F S+ E + +I ++LA I + GHTD P N NW LS RA S Sbjct: 148 LFQAGSAAIKAEADAPISEITQILADQQYAIQVEGHTDNVPISNAQFPSNWELSSMRATS 207 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338 + ++++G+ R+S + G++ + IA + + NRR+ I+V Sbjct: 208 VVRKMIENGIDAARLSAV-GYSDTQ-PIADNQTAEGRAQNRRVSIMV 252 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 + ++ +D P+N W + YADF+T+L AFF+VM+ I++ +D K + Sbjct: 1 MGRRRKFEDEPDNNDRWLVSYADFITLLFAFFVVMYGISSVNDQKYKEL 49 >gi|24213198|ref|NP_710679.1| flagellar motor protein [Leptospira interrogans serovar Lai str. 56601] gi|24193917|gb|AAN47697.1| flagellar motor protein [Leptospira interrogans serovar Lai str. 56601] Length = 223 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPL------PETIVVLQKIGEVLAH-STEVISIRGHTDASPFR 278 I IID R + P+ P ++++ +LA + I GHTD +P Sbjct: 85 IKIIDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTG 144 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337 NW L+ RA + ++K+G+ E RIS S A + P N S+NRRI+I+ Sbjct: 145 IKGYTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIV 204 Query: 338 V 338 + Sbjct: 205 I 205 >gi|262274767|ref|ZP_06052578.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] gi|262221330|gb|EEY72644.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] Length = 309 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 II R F S+ P+ ++++I +++ ++ + GHTD SP + R NW Sbjct: 173 IIRIRENGAFPAGSAFLQPKFRPLVRQIADLVKDVPGIVRVSGHTDDSPLDSELYRSNWD 232 Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 LS RA S Q + K G R+ ++ G A ++ +D P N A NRR++I + Sbjct: 233 LSAQRAVSVAQEMEKVEGFDPMRM-RVEGLAGSSPRVPNDTPENRAQNRRVEIAI 286 >gi|121997146|ref|YP_001001933.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1] gi|121588551|gb|ABM61131.1| OmpA/MotB domain protein [Halorhodospira halophila SL1] Length = 246 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Query: 198 KISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L +A+ + G V G+L+ +Q + K S P + VL ++ Sbjct: 101 EILEALQEALAEELAAGDVELGEGEDGVLLRFPEQAAFALGSKEISEPF---VPVLDRVA 157 Query: 257 EVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VLA + +I + GHTD P R + R N+ LS RA S +L +G++ +R+ Sbjct: 158 GVLADTPGLIRVSGHTDDIPIRSDRFRSNFELSTARAISVVHILKDAGITPERLIAQGHG 217 Query: 316 AHHRLKIASDPMNSA-NRRIDILVED 340 L P A NRR+D+ + D Sbjct: 218 ETRPLAPNETPEQRARNRRVDVHLVD 243 >gi|65318994|ref|ZP_00391953.1| COG1360: Flagellar motor protein [Bacillus anthracis str. A2012] gi|228933012|ref|ZP_04095875.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826613|gb|EEM72384.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 44 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 99 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 216 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 217 KNRRVVIYIKE 227 >gi|56963749|ref|YP_175480.1| motility protein B [Bacillus clausii KSM-K16] gi|56909992|dbj|BAD64519.1| motility protein B [Bacillus clausii KSM-K16] Length = 252 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 72/315 (22%), Positives = 122/315 (38%), Gaps = 96/315 (30%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 +W + YAD +T+L+A F+V++ + D D K + + +GI D Q Sbjct: 19 TWLLPYADMLTLLVALFIVLFAMGQIDQAKYDQLKIVLSETL---------GGQGILDNQ 69 Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 N ++DE VD E +N+L Sbjct: 70 N------------ALDE------VD----------------------------EQARNTL 83 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 D +L +++ LE+S ++ L +EK LA RLQ Sbjct: 84 ESDP---SELSEASKLERSELEQLQARLNGYIEEKQLA----DRLQT------------- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVI 266 E +G+LI+I D +F S+ ++I +++++ +LA I Sbjct: 124 ----------ELGASGLLITIND---GILFASGSAELKSDSIELIEQLSAMLASDPPRYI 170 Query: 267 SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I GHTD P N D NW LS RAY+ ++ + E +G+ + +++ Sbjct: 171 QISGHTDNVPMGNNEFDSNWELSSARAYNVMKLFFEYDHFEPAQLSFAGYGEYHPITSNE 230 Query: 326 PMNS--ANRRIDILV 338 ANRR+++LV Sbjct: 231 TAEGRQANRRVEVLV 245 >gi|118477164|ref|YP_894315.1| flagellar motor protein MotS [Bacillus thuringiensis str. Al Hakam] gi|228945331|ref|ZP_04107686.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183920|ref|ZP_04311136.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] gi|301053265|ref|YP_003791476.1| flagellar motor protein [Bacillus anthracis CI] gi|118416389|gb|ABK84808.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam] gi|228599572|gb|EEK57176.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] gi|228814303|gb|EEM60569.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|300375434|gb|ADK04338.1| flagellar motor protein [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 44 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 99 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 216 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 217 KNRRVVIYIKE 227 >gi|110833095|ref|YP_691954.1| hypothetical protein ABO_0234 [Alcanivorax borkumensis SK2] gi|110646206|emb|CAL15682.1| Flagellar motor protein [Alcanivorax borkumensis SK2] Length = 213 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 L ++ KRL + ++++ L +AD + G V F R GI S++ Q N+ Sbjct: 48 LEQEKAKRLAEEQRRMA--LEEALADPLASGRVTFNNGRIGISGSVLFQLNSDRLQPEGK 105 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR--DNWRLSLDRAYSAYQVL 299 L + + LQ L+ +++ + G TDA P R R DNW LS RA + + L Sbjct: 106 ALLSDLVKPLQVF---LSQHDDMLMVSGFTDALPINRGNGRYADNWGLSAQRALTVTRTL 162 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 ++ G+ D++ + F ++ +D +S NRR+++ RQ Sbjct: 163 IEQGMPADQVFA-AAFGDNQPVAPNDDADSRARNRRVELTTVPRQ 206 >gi|30019773|ref|NP_831404.1| flagellar motor protein MotS [Bacillus cereus ATCC 14579] gi|229127054|ref|ZP_04256053.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] gi|29895318|gb|AAP08605.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579] gi|228656407|gb|EEL12246.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] Length = 226 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 11/190 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 44 KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGIS 99 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ ++ I + GHTD Sbjct: 100 QVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTD 156 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330 + P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 157 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEK 216 Query: 331 NRRIDILVED 340 NRR+ I +++ Sbjct: 217 NRRVVIYIKE 226 >gi|154685777|ref|YP_001420938.1| flagellar motor protein MotB [Bacillus amyloliquefaciens FZB42] gi|154351628|gb|ABS73707.1| MotB [Bacillus amyloliquefaciens FZB42] Length = 261 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278 T+ G+LI+I +++ FD + E I + ++I +L + I I GHTD P + Sbjct: 131 TKEGLLITI---KDSIFFDSGRADIRQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIK 187 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N + NW LS+ RA + +L ++ + ++ GF ++ +++ S NRR++ Sbjct: 188 NSQYQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEYKPAVSNKTAEGRSKNRRVE 247 Query: 336 ILVEDR 341 +L++ R Sbjct: 248 VLIQPR 253 >gi|120437856|ref|YP_863542.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117580006|emb|CAL68475.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 320 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 26/233 (11%) Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 +K Y+ LE + L ++ ++ +S + +DL D +++ +E L L Sbjct: 84 EKNYESLEKSYDALE-----QNSSAAIAENSRQNRDLLGQLDEKEAALLQEKNRLEKL-- 136 Query: 181 EKILAMKRKKRLQDLAKKISS------TLSGLVADNIV----KGVLFETTRTGILISIID 230 EK LA+ R +R+ DL I++ L V++ + KG+ E + +S+ Sbjct: 137 EKDLAL-RSQRINDLENVIAAKDAKMNALKNAVSNALTNFEGKGLSVEQRDGKVYVSM-- 193 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRL 287 N +FD S E +Q++G VL + ++ + I GHTD P+ +DNW L Sbjct: 194 -ENKLLFDSGSWAVNSEGRKAVQQLGTVLGQNPDIAVLIEGHTDNVPYGGSGQLKDNWDL 252 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 S RA + Q+L ++ + + +G + ++D + NRRI++++ Sbjct: 253 STKRATAIVQILRENSNIDPQSLTAAGRGEYAPVGSNDTEAGKAKNRRIEVIL 305 >gi|330830039|ref|YP_004392991.1| chemotaxis protein MotB [Aeromonas veronii B565] gi|328805175|gb|AEB50374.1| Chemotaxis protein MotB [Aeromonas veronii B565] Length = 291 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293 +F S+ P+ I ++ KI +LA+ + + GHTD S P + R+NW LS+ RA Sbjct: 171 LFPADSAFLQPQFIPLVNKIAGILANIPGQVVVTGHTDNSQAPV-ELYRNNWELSVLRAS 229 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDI 336 S Q ++ + + R G A + + A+D P + ANRR+DI Sbjct: 230 SIVQTMLTNPQLDARRVIAQGVADTQPRFANDTPEHRQANRRVDI 274 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFN---- 70 + KKK A + P N W + YADFMT+L A F+V++ A +T+ I+ + Sbjct: 1 MAKKKKA--EAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLGK 58 Query: 71 ------PFGKNLMTASKGIFDEQN 88 P G LM GI + ++ Sbjct: 59 IGLISPPAGSPLMQGGTGILEPES 82 >gi|291286231|ref|YP_003503047.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883391|gb|ADD67091.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 247 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 8/149 (5%) Query: 192 LQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + +K++ +L V + + + V T+ G+ + I+D+ +F S+ L + Sbjct: 82 VRSVQRKVTKSLREYVKSAQMSQVVTIAETKKGVSVRILDKM---LFKSGSAEILDQGKP 138 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L K+ V+ S I + GHTD P + NW LS RA S + M VS R+ Sbjct: 139 LLDKLAAVIEESPFNIMVEGHTDDIPISTALYPSNWELSTARAVSVVKYFMSKDVSAQRL 198 Query: 310 SKISGFA--HHRLKIASDPMNSANRRIDI 336 S SG+A H S NRR+++ Sbjct: 199 SA-SGYAEYHPVTPNISAASREKNRRVEV 226 >gi|183221257|ref|YP_001839253.1| OmpA domain-containing protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911348|ref|YP_001962903.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776024|gb|ABZ94325.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779679|gb|ABZ97977.1| Putative outer membrane protein, OmpA domain; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 271 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRI 309 + K+ E LA E I+I GH + R A D N RLS DRA +A ++++GV RI Sbjct: 183 VDKLAEALAAYPETKINITGHAN----RTGAEDLNLRLSQDRAVTAKDAIIENGVEGKRI 238 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDI 336 + G DP + +NRR+++ Sbjct: 239 GTVQGLGSSTPMKNVDPKDGSNRRVEV 265 >gi|194014658|ref|ZP_03053275.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC 7061] gi|194013684|gb|EDW23249.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC 7061] Length = 254 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%) Query: 214 GVLFET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 G ET T G+LI+I D + FD +I P+ + + ++I ++L + I I G Sbjct: 119 GAKLETKLTDEGLLITIED---SIFFDSGRAIIRPQDVPLAKEISKLLVINPARDIVISG 175 Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN 328 HTD P RN NW LS RA + +L++ S ++++ S GF + ++D Sbjct: 176 HTDNVPIRNSEFESNWYLSAIRAVNFLSILLENSNLNQENFS-TKGFGEFKPIASNDTAE 234 Query: 329 --SANRRIDILV 338 S NRR+++L+ Sbjct: 235 GRSKNRRVEVLI 246 >gi|121533592|ref|ZP_01665419.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] gi|121307583|gb|EAX48498.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] Length = 257 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 10/131 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 +GV F + G+ I +D + +FD + P+ + +L + + L + I + GH Sbjct: 112 QGVGFTVSERGLTIRFLD---SILFDLGRAELRPDALPLLDAVADALKQTDNYIRVEGHA 168 Query: 273 DASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPM 327 D P N A+ NW LS R+ + + + K G+ R+S + G+ +R S+ Sbjct: 169 DNLPI-NTAQFPSNWELSAARSIAVTRYFIDKHGLEPRRLSSL-GYGEYRPLYPNTSEAN 226 Query: 328 NSANRRIDILV 338 + NRR+DI++ Sbjct: 227 RAKNRRVDIVI 237 >gi|83590576|ref|YP_430585.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] gi|83573490|gb|ABC20042.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] Length = 244 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%) Query: 199 ISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 S L +A+ +K +F T T G++IS + +FD+ + P ++ +LQKI Sbjct: 93 FSQDLQSYLAEQGLKDQVFVTATDQGLIISFT---GSVLFDRGQATLRPASVPILQKIAG 149 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314 L I + G TD P N ++ NW LS+ RA + + + +G+S R + Sbjct: 150 YLGQVPNYIGVAGSTDDLPI-NTSQFPTNWELSVIRATTVIRYFTETAGLSPSRFVALGY 208 Query: 315 FAHHRLKIASDPMNSA-----NRRIDILV 338 +H L P NS NRR+DI++ Sbjct: 209 GQYHPLF----PNNSEEDRRKNRRVDIII 233 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W + YAD +T+LMAFF+VM+ ++ D +A+ Q F +++ G ++ Sbjct: 26 WLLTYADLITLLMAFFIVMYAVSKVDMARYQQLAQALSQIFTSSAGSMVLPELGNGNQVT 85 Query: 89 PPERSSQNKIDL 100 PP+ + DL Sbjct: 86 PPDELAGFSQDL 97 >gi|228984812|ref|ZP_04144984.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775010|gb|EEM23404.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 42 SKMLEKFSDAEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 97 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 98 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 154 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 155 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|297538888|ref|YP_003674657.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297258235|gb|ADI30080.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 272 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 186 MKRKKR-LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 M+R++ + + +S+ LS L+ D V+ + + R GI I I D + +F S+ Sbjct: 102 MRREREAMTKMGIDLSNKLSPLINDGKVR--VMQNNR-GIRIDIND---SLLFTPGSAEL 155 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSG 303 VL +I ++ + +I + GHTD N + NW LS RA S ++L +G Sbjct: 156 AAAASTVLSEIAPMIKDNDRLIQVEGHTDNIAIHNDLFYSNWELSAVRASSVVRMLSDTG 215 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 V+E R+S + + + + + A NRR+ I++ Sbjct: 216 VAESRLSALGFGSTQPITENNTELGRAKNRRVSIMI 251 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58 ++I++K +DD N W + YADF+T+L AFF+VM+ I++ + Sbjct: 1 MLIRRK-PLDDDDENPDRWLVSYADFITLLFAFFVVMYSISSVN 43 >gi|222054510|ref|YP_002536872.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221563799|gb|ACM19771.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 287 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 20/160 (12%) Query: 187 KRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K K +DL +K+ S +S G V + +KG L ++++D +FD + Sbjct: 136 KTSKTYEDLLEKMKSEISQGQVTISELKGKLT--------VNMVD---AVLFDSGKAEIK 184 Query: 246 PETIVVLQKIGEVLAH-STEVISIRGHTD----ASPFRNIARDNWRLSLDRAYSAYQVLM 300 PE ++VLQK+ ++L + + I I GHTD + NW LS RA + + L Sbjct: 185 PEGLIVLQKVIDILKNIKDKSIRIEGHTDNDQIGGALAKKYQTNWELSAARAINVTRYLQ 244 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + G+ +S I+ + + A+D + NRRI+I++ Sbjct: 245 QQGIDPLNLSAIA-YGEFKPVAANDSREGKAKNRRIEIIL 283 >gi|229096214|ref|ZP_04227187.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] gi|229102326|ref|ZP_04233035.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] gi|229115169|ref|ZP_04244579.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228668309|gb|EEL23741.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228681227|gb|EEL35395.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] gi|228687174|gb|EEL41079.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] Length = 213 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P ++ EK M KKR+ +L KK L V +N + Sbjct: 30 SKMLEKFSDAEQVDAKVMENTIPDITHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 85 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 86 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIMSQLVGFFQSVPNPIVVEGHT 142 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 143 DSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 202 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 203 KNRRVVIYIKE 213 >gi|189423111|ref|YP_001950288.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] gi|189419370|gb|ACD93768.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] Length = 271 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 TR G+++S+ + FD S++ P +L I E + + + + GHTD P Sbjct: 143 TRRGLVVSL---KEAGFFDSGSAVIKPAGYQLLNTILEAMTQYSNPLRVEGHTDNIPIST 199 Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRIDI 336 + NW LS+ RA + + L K+ E +G+ R S P S NRR+DI Sbjct: 200 PLFPSNWELSVSRATNVLRYLQKNYDVEPGKLSATGYGEFRPTAENSTPEGRSKNRRVDI 259 Query: 337 LV 338 ++ Sbjct: 260 VL 261 >gi|326392537|ref|ZP_08213903.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991422|gb|EGD50048.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 114 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM-KSG 303 PE VL KIG +L I + G TD P N D NW LS+ RA + ++L+ + G Sbjct: 6 PEEKDVLIKIGNMLKTLPNHIRVEGFTDDLPMHNSKFDSNWELSVIRATNVVKILVNEVG 65 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + RIS + G+ +R + +D NRR+DI++ Sbjct: 66 IEPQRISAV-GYGEYRPVVPNDSEEHRRLNRRVDIVI 101 >gi|298507057|gb|ADI85780.1| chemotaxis MotB protein [Geobacter sulfurreducens KN400] Length = 266 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 8/127 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 R G+++S+ + FD S+I +L K+ E L+ + + + GHTD P + Sbjct: 135 RRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESLSAYSNPVRVEGHTDTMPISSA 191 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDI 336 NW LS RA + L +S + +GF +R IA + S NRR+DI Sbjct: 192 QFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEYR-PIADNNTAEGRSKNRRVDI 250 Query: 337 LVEDRQG 343 ++ +G Sbjct: 251 VLLSGEG 257 >gi|224373185|ref|YP_002607557.1| OmpA/MotB [Nautilia profundicola AmH] gi|223588582|gb|ACM92318.1| OmpA/MotB [Nautilia profundicola AmH] Length = 258 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 255 IGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 I E L + E I I+G+TD P + DNW LS RA S ++L+K GV+ ++S Sbjct: 152 IKEYLPKNIE-IQIKGYTDNQPPPPTSPYADNWELSAARALSVLKILIKDGVNPKQLSAA 210 Query: 313 SGFAHHRLKIASDPMNSA-NRRIDI 336 + +H + + P A NRR++I Sbjct: 211 AYGEYHPIAANATPEGRAKNRRVEI 235 >gi|24373103|ref|NP_717146.1| flagellar motor protein MotB [Shewanella oneidensis MR-1] gi|24347292|gb|AAN54590.1|AE015599_2 sodium-driven polar flagellar protein PomB [Shewanella oneidensis MR-1] Length = 308 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 48/323 (14%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 P W +AD M++LM FF+++ + D + +Y K + + K F Sbjct: 8 PPGAPLWLATFADLMSLLMCFFVLLLSFSEMD------VMKY-----KQIAGSMKYAF-- 54 Query: 87 QNPPERSSQNKIDLS-IDEHITKNSVDLKIGSTNQ------KKQYQRLENNIFYLSNSQQ 139 QNK+++ I + + +++ + G + +Q + + L + Sbjct: 55 ------GVQNKVEVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGED 108 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S++G E S +E K A + ++ KK+ Sbjct: 109 DSSGGTQQQNGSQRGG--------EASATAQETE-----DAVKAEAAAAQDKINQQVKKM 155 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ +AD ++ E+ I+I I R F S P V++ +GE+L Sbjct: 156 AQELNQEIADGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPVVRSVGELL 209 Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +I++ G+TD + + NW LS RA + VL++ + + K+ G A + Sbjct: 210 KDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRMKVVGMASN 269 Query: 319 RLKIASD-PMNSA-NRRIDILVE 339 + +D P N A NRR++I +E Sbjct: 270 NPIVPNDSPDNRARNRRVEIAIE 292 >gi|221635437|ref|YP_002523313.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium roseum DSM 5159] gi|221157647|gb|ACM06765.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium roseum DSM 5159] Length = 237 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%) Query: 156 DLCKSTDLEKSINKEENYFL---PPLSKEKILAMKRKKRLQ---DLAKKISSTLSGLVAD 209 DL K + S+ N + PP + + +++ R + +++S + L D Sbjct: 43 DLAKFRQVASSLRAAFNLDVLTAPPPGQSMVTPLEQDPRFNAYLSVRAQVASLFTRLGLD 102 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 +G E T GI+I + D +F + PE VL I ++ I + Sbjct: 103 R--QGAEVELTSEGIVIHLSDAI---LFPPGQAELRPEAQRVLDGIAAIIEPLPNPIRVE 157 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPM 327 GHTD++P + DNW LS RA + + L +G+ R+S +G+ R + +++ + Sbjct: 158 GHTDSTPPPPGSYPDNWELSAMRAVNTVRYLTDVAGLPPQRLSA-AGYGEFRPRASNETV 216 Query: 328 NS--ANRRIDILV 338 NRR+DI++ Sbjct: 217 EGRRKNRRVDIVI 229 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 21/30 (70%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATD 58 NL W I YAD +T+L+ FF+VM+ I+ D Sbjct: 14 NLERWLITYADLITLLLIFFVVMYSISQAD 43 >gi|150390475|ref|YP_001320524.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950337|gb|ABR48865.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF] Length = 243 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%) Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322 I + GHTD P R ++ NW LS+ RA + + L++ +GV+ +R S +G+ +R Sbjct: 157 IRVEGHTDTDPLRVTSKYETNWELSVARASNVVRFLIEDAGVTPERFSA-AGYGEYRPLA 215 Query: 323 ASDPMN--SANRRIDILV 338 A+D + + NRR+D+++ Sbjct: 216 ANDTIENKAINRRVDVVI 233 >gi|163758837|ref|ZP_02165924.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43] gi|162284127|gb|EDQ34411.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43] Length = 343 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+++GV +R+ +GF + I Sbjct: 264 VLRVDGHTDNVPLSGTGRYADNWELSTARATSVVKYLIENGVPANRLVA-AGFGEFQ-PI 321 Query: 323 A---SDPMNSANRRIDILVEDR 341 A SD + NRRI++ + +R Sbjct: 322 ADGDSDEARATNRRIELKLTER 343 >gi|296124309|ref|YP_003632087.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] gi|296016649|gb|ADG69888.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] Length = 275 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 9/112 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--AHSTEV-ISIRGHTDASPF-RNIARD----NWRL 287 +F S PE +LQ+ ++ A S + + + GHTD P R D NW L Sbjct: 147 LFASGSDEIRPEAYALLQEFARIMNSADSKHLKVLVVGHTDDKPISRKAVADKHPTNWHL 206 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILV 338 S DRA S L KSG++E R+ L SD N NRR++I V Sbjct: 207 STDRANSVVLALKKSGLAEQRMGAAGYSLFQPLAPNSDDKNRQKNRRVEIFV 258 >gi|293605836|ref|ZP_06688207.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553] gi|292815749|gb|EFF74859.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553] Length = 361 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 6/108 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293 +F + P + V++++ +L + +S+ GH+D P R A NW LS RA Sbjct: 187 LFPSGQATLSPSGLDVIKRLAGILNKNAYQVSVEGHSDPVPIQTRQFA-SNWELSSSRAT 245 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMN-SANRRIDILVE 339 S + L+ GV+ +R+ + G+A R ++ P +ANRR++++++ Sbjct: 246 SVLRELVHDGVAPERLRAV-GYAETRPIETNDTPAGRAANRRVELIMD 292 >gi|186470892|ref|YP_001862210.1| DotU family type IV/VI secretion system protein [Burkholderia phymatum STM815] gi|184197201|gb|ACC75164.1| type IV / VI secretion system protein, DotU family [Burkholderia phymatum STM815] Length = 410 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 4/142 (2%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ L+G +AD + G + T + + R +F+ S P ++ IG+ Sbjct: 269 LAGRLAGHLADEVNAGTV--TLAENAQHTTLSLRLEGIFEAGQSSVNPWVKPLITTIGQE 326 Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFA 316 +A + + + GHTD+ PF ++ R N LS RA Q+L+ +GV+ DRI S G A Sbjct: 327 VAKTPGRVLVTGHTDSQPFSHMQRSSNLALSDARAQEVAQILVSAGVATDRIDSTGKGNA 386 Query: 317 HHRLKIASDPMNSANRRIDILV 338 A+ NRR++I V Sbjct: 387 EPAADNATPQGRLRNRRVEITV 408 >gi|54294667|ref|YP_127082.1| flagellar motor protein MotD [Legionella pneumophila str. Lens] gi|53754499|emb|CAH15983.1| hypothetical protein lpl1744 [Legionella pneumophila str. Lens] Length = 273 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 ID + +FD S+ PE ++ L K+ E + + + + G+TD P NW L Sbjct: 121 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 180 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 S RA + ++L G++ RI ++G+ ++ S NRR++IL+ Sbjct: 181 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 232 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ + K++ + Sbjct: 23 WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSE 57 >gi|228926763|ref|ZP_04089831.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832876|gb|EEM78445.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 227 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 11/191 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK+ + L +N + Sbjct: 44 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKAYLD----NNGI 99 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWE 216 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 217 KNRRVVIYIKE 227 >gi|162456876|ref|YP_001619243.1| hypothetical protein sce8593 [Sorangium cellulosum 'So ce 56'] gi|161167458|emb|CAN98763.1| probable outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 210 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 22/171 (12%) Query: 184 LAMKRKKRLQDLAK--KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 LA +R R + A+ + S L+G +A+ + R GI R + +F+ +S Sbjct: 49 LAAERATRATERARLEALESALAGPLAEGRIT---LTEGRIGI-------RGSILFELNS 98 Query: 242 SIPLPETIVVLQKIGE----VLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYS 294 + P I +L+ + + L H E+I + G TD P + +R DNW LS RA + Sbjct: 99 AELQPAGIALLRALADPLKAYLEHHDELIMVSGFTDDRPLTSSSRGYADNWELSAQRALT 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 + L +GV + + +GF +D + NRR++I R+G Sbjct: 159 VTRALAAAGVPDTSLFA-AGFGERHPVAPNDTSENRAKNRRVEISPIPRRG 208 >gi|182418302|ref|ZP_02949597.1| chemotaxis protein MotB [Clostridium butyricum 5521] gi|237666437|ref|ZP_04526422.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377684|gb|EDT75228.1| chemotaxis protein MotB [Clostridium butyricum 5521] gi|237657636|gb|EEP55191.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 244 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWR 286 ++ R+ +F+ + + + +L KI +++ I I GHTD P +I +DNW Sbjct: 125 VLQLRDNILFESGKADLIDGSSEILDKINTLISTLPNSIVIEGHTDNVPISTSIYKDNWD 184 Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 LS RA + + + G R S +G+ +R K+ ++D + NRR++IL+ Sbjct: 185 LSTARASNVLRYFTQLKGQDPTRFSA-AGYGEYRPKVDNSTDENRAQNRRVNILI 238 >gi|283851028|ref|ZP_06368313.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283573674|gb|EFC21649.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 263 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 16/93 (17%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SWK+ YADF+T +MAFFL++W++ + K+ + F D+ P + Sbjct: 27 SWKVAYADFVTAMMAFFLLLWLVVSLKPQRKQELSLVFQ--------------DKNVPSK 72 Query: 92 RSSQN--KIDLSIDEHITKNSVDLKIGSTNQKK 122 QN K+ I K S + K+ N+ K Sbjct: 73 EKVQNLEKVPTFISPDAIKGSPEFKLSQENKLK 105 >gi|52842007|ref|YP_095806.1| flagellar motor protein MotD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629118|gb|AAU27859.1| flagellar motor protein MotB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 273 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 ID + +FD S+ PE ++ L K+ E + + + + G+TD P NW L Sbjct: 121 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 180 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 S RA + ++L G++ RI ++G+ ++ S NRR++IL+ Sbjct: 181 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 232 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+VM+ I++ + K++ + FN +N T S + Sbjct: 23 WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD-G 81 Query: 89 PPERSSQNKIDLSIDE 104 P E+ ++ +DE Sbjct: 82 PEEKKTKGTFKDGLDE 97 >gi|297180147|gb|ADI16369.1| flagellar motor protein [uncultured bacterium HF130_12L15] Length = 343 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 7/101 (6%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 L E I+ LQK E+ V+ + GHTD P R DNW LS RA S + L+ Sbjct: 246 LAEAIIDLQK--EIPPEINWVLRVDGHTDNVPLSGTGRYRDNWELSSARATSVVKYLISQ 303 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 GV R+ +GF + + D ++ NRRI++ + +R Sbjct: 304 GVPASRLVA-AGFGEFQPLVEGDTPDARNKNRRIELKLTER 343 >gi|254517026|ref|ZP_05129084.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3] gi|219674531|gb|EED30899.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3] Length = 270 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F S L +I +L+++ + L + ++GHTD P RN NW LS RA + Sbjct: 154 LFPSGSRSLLASSIPMLRRLADTLKALPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAA 213 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 +V + GV ++S + GF +R AS+ + NRR+ +LV Sbjct: 214 IARVFEEEGVDPVKLSAV-GFGPNRPIADNASEEGRAENRRVVVLV 258 >gi|171060724|ref|YP_001793073.1| hypothetical protein Lcho_4056 [Leptothrix cholodnii SP-6] gi|170778169|gb|ACB36308.1| type IV / VI secretion system protein, DotU family [Leptothrix cholodnii SP-6] Length = 460 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284 S++ R +F+ S+ +L+++ + LA + + GHTD+ P R+ AR N Sbjct: 320 SVVTLRGDGLFEPGSATLAAPKEALLRRVADALAQFGGAVLVTGHTDSQPIRS-ARFPSN 378 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 W LS +RA + ++L+ V+ +R+ + G A +A+D + NRR++I Sbjct: 379 WHLSQERAGAVRELLVSQQVATERV-RAEGRADGEPVVANDSAGNRALNRRVEI 431 >gi|148359324|ref|YP_001250531.1| flagellar motor protein MotB [Legionella pneumophila str. Corby] gi|296107371|ref|YP_003619071.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy] gi|148281097|gb|ABQ55185.1| flagellar motor protein MotB [Legionella pneumophila str. Corby] gi|295649272|gb|ADG25119.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy] Length = 267 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 ID + +FD S+ PE ++ L K+ E + + + + G+TD P NW L Sbjct: 115 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 174 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 S RA + ++L G++ RI ++G+ ++ S NRR++IL+ Sbjct: 175 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 226 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+VM+ I++ + K++ + FN +N T S + Sbjct: 17 WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD-G 75 Query: 89 PPERSSQNKIDLSIDE 104 P E+ ++ +DE Sbjct: 76 PEEKKTKGTFKDGLDE 91 >gi|78063205|ref|YP_373113.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77971090|gb|ABB12469.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 226 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP++ VL +I + L+ H+T I + GHTD+ P N + NW LS RA Sbjct: 119 LFNVGDARLLPDSSPVLNQIAQALSDHATGDILVEGHTDSVPIANAKYESNWELSSARAG 178 Query: 294 SAYQVLMKSGVSEDRISKIS 313 S + L + GV+ R++ I Sbjct: 179 SVVRYLTERGVAPHRLAAIG 198 >gi|54297693|ref|YP_124062.1| flagellar motor protein MotD [Legionella pneumophila str. Paris] gi|53751478|emb|CAH12896.1| hypothetical protein lpp1744 [Legionella pneumophila str. Paris] Length = 273 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 ID + +FD S+ PE ++ L K+ E + + + + G+TD P NW L Sbjct: 121 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 180 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 S RA + ++L G++ RI ++G+ ++ S NRR++IL+ Sbjct: 181 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 232 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+VM+ I++ + K++ + FN +N T S + Sbjct: 23 WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNIKD-G 81 Query: 89 PPERSSQNKIDLSIDE 104 P E+ ++ +DE Sbjct: 82 PEEKKTKGTFKDGLDE 97 >gi|307610480|emb|CBX00052.1| hypothetical protein LPW_18071 [Legionella pneumophila 130b] Length = 267 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 ID + +FD S+ PE ++ L K+ E + + + + G+TD P NW L Sbjct: 115 IDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEGYTDNVPIETPQYPSNWEL 174 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 S RA + ++L G++ RI ++G+ ++ S NRR++IL+ Sbjct: 175 SAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAGRSQNRRVNILI 226 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+VM+ I++ + K++ + FN +N T S + Sbjct: 17 WVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKD-G 75 Query: 89 PPERSSQNKIDLSIDE 104 P E+ ++ +DE Sbjct: 76 PEEKKTKGTFKDGLDE 91 >gi|228914307|ref|ZP_04077922.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845301|gb|EEM90337.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%) Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 +P +S EK M KKR+ +L KK L V +N + V TG+ + I+D Sbjct: 65 IPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL- 119 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 +FD + PE ++ ++ I + GHTD+ P N NW LS RA Sbjct: 120 --IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARA 177 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + L++ +D+ G+A + + +D P N NRR+ I +++ Sbjct: 178 ANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYIKE 227 >gi|242280812|ref|YP_002992941.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242123706|gb|ACS81402.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 248 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 10/174 (5%) Query: 169 KEENYFLPP--LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 +E+N L P L ++++ KRL L +I + L A GV + + G+++ Sbjct: 71 EEDNLALTPSDLKRKEVKMDSNDKRLLGLVLRIKALLDEDDATRKSSGV--KADQDGVVV 128 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285 S + +F+ S+ PE VL K+ +L + +RGHTD S + NW Sbjct: 129 ST---DSATLFEPGSATLRPEAHKVLDKVISILKDHNYNLVVRGHTDNSEIHSRKFPTNW 185 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDIL 337 LS RA SA + +++ G + K G+A + + +D P N S NRR++ Sbjct: 186 ELSSARAASALRYIVEQGGIAPKRLKAVGYADTQPLVKNDSPANKSKNRRLEFF 239 >gi|317407354|gb|EFV87320.1| OmpA-family protein [Achromobacter xylosoxidans C54] Length = 332 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 6/108 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293 +F + P + V++++ +L + +S+ GH+D P R A NW LS RA Sbjct: 190 LFPSGQATLSPSGLDVIKRLAAILNKNDYQVSVEGHSDPVPIQTRQFA-SNWELSSSRAT 248 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVE 339 S + L++ GV+ R+ + G+A R ++D P +ANRR++++++ Sbjct: 249 SVLRELVRDGVAGSRLRAV-GYAETRPIESNDTPAGRAANRRVELIMD 295 >gi|153008534|ref|YP_001369749.1| hypothetical protein Oant_1203 [Ochrobactrum anthropi ATCC 49188] gi|151560422|gb|ABS13920.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 343 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLTGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQPLD 322 Query: 323 ASDPMN--SANRRIDILVEDR 341 ASD + S NRRI++ + +R Sbjct: 323 ASDTADARSKNRRIELKLTER 343 >gi|310659033|ref|YP_003936754.1| motility protein b [Clostridium sticklandii DSM 519] gi|308825811|emb|CBH21849.1| motility protein B [Clostridium sticklandii] Length = 216 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 17/164 (10%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 ++L M+ ++L+D ++ L + + + V G+L+ D +FD S Sbjct: 50 EVLEMQNFQKLEDTIQEY------LDKNQLSESVTVLEEEAGLLLRFQD---NILFDSGS 100 Query: 242 SIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAY 296 + PE++ ++ I ++L + ISI GHTD P N R NW LS+ R+ + Sbjct: 101 ADLKPESLEIMSYIAQLLNAEDFKDKFISIEGHTDDVPM-NSPRYPSNWELSVGRSSNVV 159 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + L+++ + + SG++ + +D + NRR+DIL+ Sbjct: 160 RFLVENNNMDPKRISASGYSEYHPVAQNDTAENRAKNRRVDILI 203 >gi|91793918|ref|YP_563569.1| flagellar motor protein MotB [Shewanella denitrificans OS217] gi|91715920|gb|ABE55846.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 318 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ + + KK++ L+ + D ++ E+ I+I I R F S P+ Sbjct: 147 QENINEQVKKMAEQLNEEIVDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPKF 200 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSE 306 V++ IG +L +I++ GHTD N + NW LS RA + A++ + G E Sbjct: 201 KPVIRSIGSLLKDVPGIITVAGHTDGMHISNELYSSNWDLSSARAVAVAHEFMRVPGFDE 260 Query: 307 DRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 R+ K+ G A + ++ S S NRR++I +E Sbjct: 261 TRM-KVVGMASNDQLVSNESSENRSQNRRVEITIE 294 >gi|206970743|ref|ZP_03231695.1| putative chemotaxis protein MotB [Bacillus cereus AH1134] gi|218233445|ref|YP_002366413.1| flagellar motor protein MotS [Bacillus cereus B4264] gi|218896660|ref|YP_002445071.1| putative chemotaxis protein MotB [Bacillus cereus G9842] gi|296502310|ref|YP_003664010.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171] gi|206734379|gb|EDZ51549.1| putative chemotaxis protein MotB [Bacillus cereus AH1134] gi|218161402|gb|ACK61394.1| putative chemotaxis protein MotB [Bacillus cereus B4264] gi|218544664|gb|ACK97058.1| putative chemotaxis protein MotB [Bacillus cereus G9842] gi|296323362|gb|ADH06290.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171] Length = 225 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%) Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 +P +S EK M KKR+ +L KK L V +N + V TG+ + I+D Sbjct: 63 IPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL- 117 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 +FD + PE ++ ++ I + GHTD+ P N NW LS RA Sbjct: 118 --IFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARA 175 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + L++ +D+ G+A + + +D P N NRR+ I +++ Sbjct: 176 ANMIHHLIEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEKNRRVVIYIKE 225 >gi|75760652|ref|ZP_00740680.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900309|ref|ZP_04064539.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] gi|228907361|ref|ZP_04071219.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] gi|228920439|ref|ZP_04083784.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938842|ref|ZP_04101442.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952108|ref|ZP_04114203.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958007|ref|ZP_04119744.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971723|ref|ZP_04132344.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978332|ref|ZP_04138709.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|229043482|ref|ZP_04191192.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|229069280|ref|ZP_04202570.1| OmpA/MotB domain protein [Bacillus cereus F65185] gi|229078910|ref|ZP_04211462.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|229109185|ref|ZP_04238784.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|229144340|ref|ZP_04272746.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|229149929|ref|ZP_04278157.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|229178137|ref|ZP_04305508.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|229189825|ref|ZP_04316836.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|74491866|gb|EAO55054.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228593633|gb|EEK51441.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|228605267|gb|EEK62717.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|228633610|gb|EEK90211.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|228639127|gb|EEK95551.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|228674195|gb|EEL29440.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|228704324|gb|EEL56758.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|228713767|gb|EEL65652.1| OmpA/MotB domain protein [Bacillus cereus F65185] gi|228725860|gb|EEL77107.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|228781349|gb|EEM29550.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|228787813|gb|EEM35771.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801714|gb|EEM48594.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807640|gb|EEM54164.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820691|gb|EEM66716.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839069|gb|EEM84365.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852222|gb|EEM97018.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] gi|228859344|gb|EEN03774.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] Length = 226 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%) Query: 175 LPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 +P +S EK M KKR+ +L KK L V +N + V TG+ + I+D Sbjct: 64 IPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL- 118 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 +FD + PE ++ ++ I + GHTD+ P N NW LS RA Sbjct: 119 --IFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARA 176 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + L++ +D+ G+A + + +D P N NRR+ I +++ Sbjct: 177 ANMIHHLIEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEKNRRVVIYIKE 226 >gi|302338088|ref|YP_003803294.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301635273|gb|ADK80700.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 242 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 8/105 (7%) Query: 240 SSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAY 296 S+ + + E+ LQK+ +L + I GHTD++P NW LS DRA + Sbjct: 134 SAEVQIEESRETLQKLSALLRSMPGRKFRIEGHTDSTPTDPTGPWPTNWELSTDRATNVL 193 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 L+ GV+E++ +++GFA + +AS+ NRR+DI++ Sbjct: 194 HYLVDFGVTENQF-QVAGFA-DTVPLASESTEEGKAYNRRVDIII 236 >gi|148265913|ref|YP_001232619.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146399413|gb|ABQ28046.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 287 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 20/160 (12%) Query: 187 KRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K K +DL +K+ S +S G V + +KG L ++++D +FD + Sbjct: 136 KTSKTYEDLLEKMKSEISQGQVTISELKGKLT--------VNMVD---AVLFDSGKAEVK 184 Query: 246 PETIVVLQKIGEVLAH-STEVISIRGHTD-ASPFRNIARD---NWRLSLDRAYSAYQVLM 300 P+ +VVLQK+ ++L + + I I GHTD S +A+ NW LS RA + + L Sbjct: 185 PDGLVVLQKVIDILKNIKDKSIRIEGHTDNVSIVGALAKKYPTNWELSAARAINVTRYLQ 244 Query: 301 KSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 + G+ ++ I+ + + +D P A NRRI+I++ Sbjct: 245 QQGIDPTNLAAIA-YGEFKPVAGNDTPEGKAKNRRIEIIL 283 >gi|82702444|ref|YP_412010.1| flagellar motor protein MotD [Nitrosospira multiformis ATCC 25196] gi|82410509|gb|ABB74618.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] Length = 288 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSE 306 VL+ + +VL ++ I + GHTD+ P I D NW LS RA S ++L+ SGV Sbjct: 160 VLEAVAQVLKNNDYPIQVEGHTDSIP---IVTDKFPSNWELSAVRASSVVRLLIGSGVEA 216 Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R++ + G+ +R ++D + + NRR+ I++ Sbjct: 217 ARLTAV-GYGENRPVDSNDTEDGRTRNRRVTIMI 249 >gi|209883793|ref|YP_002287650.1| OmpA/MotB [Oligotropha carboxidovorans OM5] gi|209871989|gb|ACI91785.1| OmpA/MotB [Oligotropha carboxidovorans OM5] Length = 464 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 9/107 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ P+++ +L ++ EV L ST I I GHTD++ A N LS RA S Sbjct: 363 FETGKAVIDPDSVGLLDRLVEVVLRCSTSQIEITGHTDSN---GDAESNLALSNRRAQSV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVE 339 L+K+GV +RI+ I GF R IA ++ + NRRI+ LV+ Sbjct: 420 ADYLIKAGVPSERITAI-GFGSGR-PIAPNDTEEGKAQNRRIEFLVK 464 >gi|302387785|ref|YP_003823607.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1] gi|302198413|gb|ADL05984.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1] Length = 262 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 D P LGSW Y D +T+L+ FF++++ +++ D K + Q FNP Sbjct: 5 DKKPEELGSWMDTYGDMVTLLLCFFVLLYSMSSVDQSKWKLLVQSFNP 52 >gi|157692040|ref|YP_001486502.1| flagellar motor protein MotB [Bacillus pumilus SAFR-032] gi|157680798|gb|ABV61942.1| flagellar motor protein B [Bacillus pumilus SAFR-032] Length = 254 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 11/132 (8%) Query: 214 GVLFET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 G ET T G+LI+I D + FD ++ P+ + + ++I ++L + I I G Sbjct: 119 GAKLETKLTDEGLLITIED---SIFFDSGRAVIRPQDVPLAKEISKLLVINPARDIVISG 175 Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN 328 HTD P RN NW LS RA + +L++ S ++++ S GF + ++D Sbjct: 176 HTDNVPIRNSDFESNWYLSAIRAVNFLSILLENSNLNQENFS-TKGFGEFKPIASNDTAE 234 Query: 329 --SANRRIDILV 338 S NRR+++L+ Sbjct: 235 GRSKNRRVEVLI 246 >gi|13473358|ref|NP_104925.1| hypothetical protein mlr3926 [Mesorhizobium loti MAFF303099] gi|14024107|dbj|BAB50711.1| mlr3926 [Mesorhizobium loti MAFF303099] Length = 343 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 L + I+ LQK E+ V+ + GHTD P R DNW LS R+ S + L+++ Sbjct: 246 LADAIIELQK--EIPPEINWVLRVDGHTDNKPLSGTGRFRDNWELSTARSTSVVKFLIEN 303 Query: 303 GVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341 GV +R+ +GF + L A +D + NRRI++ + +R Sbjct: 304 GVPANRLVA-AGFGEFQPLDPADTDEARNKNRRIELKLTER 343 >gi|315225528|ref|ZP_07867338.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287] gi|314944472|gb|EFS96511.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287] Length = 456 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 9/107 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD + + P++ VL +I +VL + SI G+TD S R+ N +LS DRA Sbjct: 351 TILFDVNKATIKPQSATVLNQIVDVLNQYKNAKFSIEGYTDISGKRD---KNQKLSEDRA 407 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 YS L++ G+ E R++ GF + IAS+ NRR++I Sbjct: 408 YSVKAYLIEKGIDEGRLT-AKGFGPDK-PIASNKTKKGRELNRRVEI 452 >gi|284989545|ref|YP_003408099.1| OmpA/MotB domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062790|gb|ADB73728.1| OmpA/MotB domain protein [Geodermatophilus obscurus DSM 43160] Length = 313 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Query: 217 FETTRTGILISII-DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 FE G+++ I+ DQ +FD ++ PE +L I L + + GH + Sbjct: 155 FEIDERGLVVHIVADQV---LFDAEQAVLRPEGRQILDAIAPTLRGLPNSLGVEGHANHL 211 Query: 276 PFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMN-SAN 331 P I NW LS RA + + L GV R+ +G++ R L +DP + S N Sbjct: 212 PVTPGGIWPSNWELSAYRATTVVRYLTTGGVPGARMVA-NGYSDTRPLVPPTDPNSISVN 270 Query: 332 RRIDILV 338 RR+D++V Sbjct: 271 RRVDVVV 277 >gi|58038715|ref|YP_190679.1| hypothetical protein GOX0240 [Gluconobacter oxydans 621H] gi|58001129|gb|AAW60023.1| Flagellar motor protein [Gluconobacter oxydans 621H] Length = 333 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323 ++ + GH D P + NW LS +RA + ++L+ GV ++ +GFA ++ L A Sbjct: 256 ILRVDGHADRQPIHSAFPSNWELSSERAITVVKLLIAEGVDPHHLAA-TGFADYQPLDAA 314 Query: 324 SDPMNSA-NRRIDILVEDR 341 S P A NRRI+ + DR Sbjct: 315 STPAAYARNRRIEFRLTDR 333 >gi|86134567|ref|ZP_01053149.1| OmpA family protein [Polaribacter sp. MED152] gi|85821430|gb|EAQ42577.1| OmpA family protein [Polaribacter sp. MED152] Length = 283 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 17/127 (13%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEV-ISIRGHTDASPF- 277 +T + ISI D+ + KS S + E VL KI +V+ ++ + I GHTD +P Sbjct: 149 KTVVFISISDK----LLFKSGSYNVTENAYTVLDKIAKVIKDQPKMEVMIEGHTDTTPIK 204 Query: 278 RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA-----N 331 R++ +DNW LS RA S ++L K GV +R+ I+ + +A P ++A N Sbjct: 205 RDLIQDNWDLSALRATSITRILQYKFGVKPERL--IAAGRSQYIPLA--PNDTAENKAKN 260 Query: 332 RRIDILV 338 RR I++ Sbjct: 261 RRTKIII 267 >gi|163755499|ref|ZP_02162618.1| putative flagellar motor protein MotB [Kordia algicida OT-1] gi|161324412|gb|EDP95742.1| putative flagellar motor protein MotB [Kordia algicida OT-1] Length = 286 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 34/206 (16%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++ +E+ + SL +S K KDL K T L+ ++NK+++ L +S ++K+ + D Sbjct: 88 TKGAENLEKSL--ESMKEKDL-KITRLQDALNKKDSVTLAIVS-----SLKKAVGIDDPD 139 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I N+ KGV+F ISI D+ +F S + VVL K+ Sbjct: 140 IEI----------NVEKGVVF--------ISIADKL---LFKSGSYNVTDKAKVVLGKVA 178 Query: 257 EVLAHSTEV-ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +V+ + GHTD P+ + + DNW LS+ R+ S +VL + GV+ ++ +G Sbjct: 179 KVVNSKPNFECMVEGHTDNVPYNKGVLIDNWDLSVKRSTSIIRVLQELGVNPGQLIA-AG 237 Query: 315 FAHHRLKIASD-PMNSA-NRRIDILV 338 +++ + +D P N A NRR I+V Sbjct: 238 RSYYVPLVENDTPENRATNRRTRIVV 263 >gi|163939534|ref|YP_001644418.1| flagellar motor protein MotS [Bacillus weihenstephanensis KBAB4] gi|163861731|gb|ABY42790.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4] Length = 227 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 11/190 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK KKR+ +L KK L V +N V Sbjct: 45 KMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVSKKRMDELYKK----LKAYVDNNGVS 100 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TGI I I+D +FD + PE V+ ++ I + GHTD Sbjct: 101 QVNVYREDTGISIVIVDNL---IFDTGDANVKPEAKEVISQLVGFFQSVPNPIVVEGHTD 157 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330 + P N NW LS RA + L++ +D+ G+A + ++D P N Sbjct: 158 SRPIHNENFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVASNDSPQNWEK 217 Query: 331 NRRIDILVED 340 NRR+ I +++ Sbjct: 218 NRRVVIYIKE 227 >gi|254428132|ref|ZP_05041839.1| OmpA family protein [Alcanivorax sp. DG881] gi|196194301|gb|EDX89260.1| OmpA family protein [Alcanivorax sp. DG881] Length = 212 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 L ++ KRL + ++++ L +AD + G V F R GI S++ Q N+ Sbjct: 47 LEQEKAKRLAEEQRRMA--LEEALADPLASGRVTFHNGRIGISGSVLFQLNSDQLQPEGE 104 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR--DNWRLSLDRAYSAYQVL 299 L + + LQ L+ +++ + G TD P R R DNW LS RA + + L Sbjct: 105 ALLSDLVKPLQVF---LSQHDDMLMVSGFTDDLPINRGNGRYADNWGLSAQRALTVTRTL 161 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 ++ G+ D++ + F ++ +D +S NRR+++ RQ Sbjct: 162 IEQGMPADQVFA-AAFGDNQPVAPNDDADSRARNRRVELTTVPRQ 205 >gi|113971062|ref|YP_734855.1| flagellar motor protein MotB [Shewanella sp. MR-4] gi|114048292|ref|YP_738842.1| flagellar motor protein MotB [Shewanella sp. MR-7] gi|117921338|ref|YP_870530.1| flagellar motor protein MotB [Shewanella sp. ANA-3] gi|113885746|gb|ABI39798.1| OmpA/MotB domain protein [Shewanella sp. MR-4] gi|113889734|gb|ABI43785.1| OmpA/MotB domain protein [Shewanella sp. MR-7] gi|117613670|gb|ABK49124.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 306 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 9/146 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KK++ L+ + D ++ E+ I+I I R F S P V++ +G Sbjct: 153 KKMAQELNNEITDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPVVRSVG 206 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 E+L +I++ G+TD + + NW LS RA + VL++ + + K+ G Sbjct: 207 ELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRMKVVGM 266 Query: 316 AHHRLKIASD-PMNSA-NRRIDILVE 339 A + + +D P N A NRR++I +E Sbjct: 267 ASNNPIVPNDSPENRARNRRVEIAIE 292 >gi|320106352|ref|YP_004181942.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924873|gb|ADV81948.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4] Length = 284 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 68/327 (20%), Positives = 118/327 (36%), Gaps = 87/327 (26%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK------AIEQYFNPFGKNLMTA 79 P+ W + YADF+T+L AFF+V++ + D KK AI+ F Sbjct: 8 APHGHERWLVSYADFITLLFAFFVVLFA--GSRGDAKKQQLLAVAIQTAF---------- 55 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 ++G FD H ++ G+ + + Sbjct: 56 AQGAFDA------------------HSKTPALAPSAGAMGKPTP--------IAMPTPMT 89 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E D ++ D L + ++N LPPL + KR Sbjct: 90 PEAAARKEAADKKRIYD-----ALAQMAVPQKNQNLPPLGAKPPSPEKR----------- 133 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + V F + G+++S+ D F+ S+ + I VL++I L Sbjct: 134 ---------GTAISAVSFRSEPEGLVLSLQDAG---FFNSGSAALRADAIPVLERIAASL 181 Query: 260 AHSTEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + GHTD N+A NW LS RA + +VL+ + ++ Sbjct: 182 PMGP--LRVEGHTD-----NVAIHTALYASNWELSTARANAIARVLLARSLVNPASLAVA 234 Query: 314 GFA--HHRLKIASDPMNSANRRIDILV 338 G+A H +++ + NRR+DI++ Sbjct: 235 GYAEFHPISSNSTEEGRAKNRRVDIVL 261 >gi|229062194|ref|ZP_04199517.1| OmpA/MotB domain protein [Bacillus cereus AH603] gi|229169237|ref|ZP_04296950.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228614220|gb|EEK71332.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228717088|gb|EEL68766.1| OmpA/MotB domain protein [Bacillus cereus AH603] Length = 233 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G++++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 106 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDTVPIA 162 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334 N NW LS RA + QVL+++ + ++ S I G+ +R +D P A NRR+ Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-GYGEYRSIAPNDTPEGKAKNRRV 221 Query: 335 DILV 338 ++ + Sbjct: 222 EVFI 225 >gi|78484704|ref|YP_390629.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78362990|gb|ABB40955.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2] Length = 241 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 266 ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI 322 + I GHTDA+P A + N+ LS RAY+ VL + SG+ E S I+G+ + Sbjct: 157 VRIEGHTDATPLAKTALYQSNFELSTFRAYAIMNVLQIYSGLPESLFS-IAGYGSFH-PV 214 Query: 323 ASDPMNSANRRIDILV 338 +P +S NRR++I + Sbjct: 215 TRNPYDSKNRRVEIYL 230 >gi|54308004|ref|YP_129024.1| flagellar motor protein MotB [Photobacterium profundum SS9] gi|46912430|emb|CAG19222.1| putative sodium-driven polar flagellar protein MotB [Photobacterium profundum SS9] Length = 310 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 72/336 (21%), Positives = 131/336 (38%), Gaps = 81/336 (24%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---S 80 P W +AD T+LM FF+++ + D K I FG +N++ Sbjct: 8 CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67 Query: 81 KG--IFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 KG + ++ P R I++ + + I T+ ++D G +++ Sbjct: 68 KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRA--------------- 112 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQ 193 RD+ K KS D+ +N+ + S+E++L + +K + +Q Sbjct: 113 --------GGTKRDAGKLTG-GKSADVATQMNQNNQSEMSE-SQEQLLEVMQKALDREIQ 162 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D A ++ +N + V+ G F S+ P+ +++ Sbjct: 163 DGAIEV---------ENFGQQVVIRIKEKG------------AFPAGSAFLQPKFRPLVR 201 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +I +++ +I I GHTD + R NW LS RA S Q + ++ Sbjct: 202 QIADLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEQV 251 Query: 313 SGFAHHRLKIA----SDPMNS--------ANRRIDI 336 GF H RL++ + P+NS NRR++I Sbjct: 252 KGFDHKRLRVVGLADTAPLNSNKTAEERKVNRRVEI 287 >gi|90410908|ref|ZP_01218922.1| flagellar motor protein [Photobacterium profundum 3TCK] gi|90328121|gb|EAS44432.1| flagellar motor protein [Photobacterium profundum 3TCK] Length = 310 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 71/336 (21%), Positives = 132/336 (39%), Gaps = 81/336 (24%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---S 80 P W +AD T+LM FF+++ + D K I FG +N++ Sbjct: 8 CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67 Query: 81 KG--IFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 KG + ++ P R I++ + + I T+ ++D G +++ +R + L+ Sbjct: 68 KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRAGGTKR---DAGKLTG 124 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQ 193 Q S D+ +N+ + S+E++L + +K + +Q Sbjct: 125 GQ---------------------SADVATQMNQNNQSEMSE-SQEQLLEVMQKALDREIQ 162 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D A ++ +N + V+ G F S+ P+ +++ Sbjct: 163 DGAIEV---------ENFGQQVVIRIKEKG------------AFPAGSAFLQPKFRPLVR 201 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +I +++ +I I GHTD + R NW LS RA S Q + ++ Sbjct: 202 QIADLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEQV 251 Query: 313 SGFAHHRLKIA----SDPMNS--------ANRRIDI 336 GF H RL++ + P+NS NRR++I Sbjct: 252 KGFDHKRLRVVGLADTAPLNSNKTAEERKVNRRVEI 287 >gi|229135343|ref|ZP_04264134.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] gi|228648118|gb|EEL04162.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] Length = 234 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMLTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA 330 P N NW LS RA + QVL+++ + ++ S I G+ +R +D P A Sbjct: 159 TVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-GYGEYRSIAPNDTPEGKA 217 Query: 331 -NRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|332879143|ref|ZP_08446844.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682943|gb|EGJ55839.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 454 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD S PE+ VL I VL + S+ G+TD S ++ N RLS DRA Sbjct: 349 TILFDVGKSTIRPESATVLNNIVNVLNKYKNSKFSVEGYTDTSGNKD---KNQRLSEDRA 405 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 YS L+ G++ R+S GF + IAS+ NRR++I Sbjct: 406 YSVKAYLVDKGINPARLS-AKGFGPEK-PIASNKTKKGRELNRRVEI 450 >gi|254492051|ref|ZP_05105228.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224462748|gb|EEF79020.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 297 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 I +L+KI VL + I++ GHTD P R NW LS RA S L+ G Sbjct: 173 IPILKKIHNVLLKTDGRIAVAGHTDDVPINTSRYRSNWELSTSRATSVVHELLAPGDMPA 232 Query: 308 RISKISGFAHHR-LKIASDPMNSA-NRRIDILV 338 + G+A + L+ P N A NRR++I+V Sbjct: 233 ERFVLEGYADTKPLEPNDSPTNRARNRRVEIIV 265 >gi|255036139|ref|YP_003086760.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254948895|gb|ACT93595.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 295 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 V E + + +S+ D+ +F SS+ VL K+ ++L E+ I I GHTD Sbjct: 154 VQIEVKKGVVYVSLSDKM---LFRSGSSVINSAADNVLSKVAKILNDYKEIEILIEGHTD 210 Query: 274 ASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNS 329 P + DNW LS+ RA + + L K GV R+ G + K+A+D P S Sbjct: 211 NVPIATDKVADNWDLSVLRATAVARTLQKKYGVEPVRMIA-GGRGEYLPKVANDSAPNRS 269 Query: 330 ANRRIDILV 338 NRR +I++ Sbjct: 270 LNRRTEIII 278 >gi|229058360|ref|ZP_04196744.1| OmpA/MotB domain protein [Bacillus cereus AH603] gi|229166569|ref|ZP_04294321.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228616823|gb|EEK73896.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228719869|gb|EEL71459.1| OmpA/MotB domain protein [Bacillus cereus AH603] Length = 225 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KKR+ +L KK L V +N V V TG+ I I+D +FD + PE Sbjct: 78 KKRMDELYKK----LKAYVDNNGVSQVNVYREDTGVSIVIVDNL---IFDTGDANVKPEA 130 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 V+ ++ I + GHTD+ P N NW LS RA + L++ +D Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190 Query: 308 RISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + G+A + ++D P N NRR+ I +++ Sbjct: 191 KRLAAVGYADTKPVASNDSPQNWEKNRRVVIYIKE 225 >gi|110639014|ref|YP_679223.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281695|gb|ABG59881.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC 33406] Length = 323 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 37/256 (14%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL---------SNSQQSEHCKNSLT-R 149 L+I + +++ DL + Y+ L N L N+ + E SL R Sbjct: 73 LAISNQLLQDTTDLNAALRKTQANYEALNNTYERLLSTHNKIINYNASELEKLNKSLAKR 132 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + E GK ++ E+ +N+ EKI+A K ++ + +L K++S L Sbjct: 133 ELEVGKLQADLSERERRVNE----------LEKIIADK-ERAVNELRNKVTSALLNYKD- 180 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 K + + + +S+ +Q +F S+ P+ + L+K+ VL ++ I + Sbjct: 181 ---KDLTIQVKDGKVYVSLAEQ---LLFKSGSTDVDPKGVEALKKLAAVLKEQQDITIMV 234 Query: 269 RGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 GHTD P N +DNW LS+ RA S ++L +GV D I + + +A+ Sbjct: 235 EGHTDDVPVSKGTNGIKDNWDLSVLRATSITRILTGAGV--DPIHVVPAGHGEFIPVATA 292 Query: 326 PMNSA---NRRIDILV 338 A NRR +I++ Sbjct: 293 KTAEARSQNRRTEIIL 308 >gi|167576592|ref|ZP_02369466.1| hypothetical protein BthaT_00570 [Burkholderia thailandensis TXDOH] Length = 433 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 LS L+ + I +G+L + TR S++ R MF S LPE VL K+ + Sbjct: 296 LSILLKNEIARGLLTVDEDDTR-----SVVVFRGDSMFRSGESRVLPEIEPVLDKVAREV 350 Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAH 317 A +++ GH+D P R +N LS RA Q+L++ G D I S+ G A Sbjct: 351 ARVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHIRSEGRGDAQ 410 Query: 318 HRLKIASDPMNSANRRIDILV 338 + + S NRR++I V Sbjct: 411 PVAENTTPAGRSRNRRVEIAV 431 >gi|52079917|ref|YP_078708.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580] gi|52785288|ref|YP_091117.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580] gi|52003128|gb|AAU23070.1| motility protein B [Bacillus licheniformis ATCC 14580] gi|52347790|gb|AAU40424.1| MotB [Bacillus licheniformis ATCC 14580] Length = 259 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 10/163 (6%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 K L+ +K++ + KKI ++ + + N+ K V + T G+L+SI D FD Sbjct: 89 KDLSEAQKEKDKQSLKKIQEQVNRFIKEKNLQKQVNTKLTDEGLLLSIED---NIFFDSG 145 Query: 241 SSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298 + + I + +++ ++L + I I GHTD P RN + NW LS+ RA + + Sbjct: 146 KAEIRQQDIPLAKEVSDLLVLNPPRNIVISGHTDNVPIRNSQFKSNWHLSVMRAVNFMGL 205 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 L+++ + +I G+ + IAS+ NRR++IL+ Sbjct: 206 LIENPKLDAKIFSAKGYGEFK-PIASNDTEEGRRKNRRVEILI 247 >gi|32266001|ref|NP_860033.1| flagellar motor protein MotB [Helicobacter hepaticus ATCC 51449] gi|32262050|gb|AAP77099.1| flagellar motor component MotB [Helicobacter hepaticus ATCC 51449] Length = 251 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I +RG+TD +P +R DN+ LS R+ S + L+K+G+S +RIS SG+ H+ Sbjct: 153 IDVRGYTDNAPLPVGSRYKDNYELSSARSLSVMKNLIKNGISPERIS-FSGYGEHQAIAP 211 Query: 324 SD-PMNSA-NRRIDIL 337 +D +N A N R++I Sbjct: 212 NDSALNRAKNNRVEIF 227 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I++T + + ++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISSTSNADSELLKTEF 52 >gi|229013711|ref|ZP_04170840.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048] gi|228747633|gb|EEL97507.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048] Length = 234 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMLTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA 330 P N NW LS RA + QVL+++ + ++ S + G+ +R +D P A Sbjct: 159 TVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPNDTPEGKA 217 Query: 331 -NRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|260467043|ref|ZP_05813223.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] gi|259029152|gb|EEW30448.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] Length = 343 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 13/104 (12%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 L + I+ LQK E+ V+ + GHTD P R DNW LS R+ S + L+++ Sbjct: 246 LADAIIELQK--EIPPEINWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIEN 303 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDR 341 GV +R+ +GF + DP ++ NRRI++ + +R Sbjct: 304 GVPANRLVA-AGFGEFQ---PLDPADTEEARNKNRRIELKLTER 343 >gi|110635517|ref|YP_675725.1| hypothetical protein Meso_3188 [Mesorhizobium sp. BNC1] gi|110286501|gb|ABG64560.1| OmpA/MotB [Chelativorans sp. BNC1] Length = 343 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 13/104 (12%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 L I+ LQ+ E+ V+ + GHTD P R DNW LS RA + + L++S Sbjct: 246 LAGAILELQR--EIPPEINWVLRVDGHTDNIPLSGTGRFRDNWELSTARAVAVVKFLIES 303 Query: 303 GVSEDRISKISGFAHHRLKIASDPMN-----SANRRIDILVEDR 341 GV +R+ +GF + DP N S NRRI++ + +R Sbjct: 304 GVPAERLVA-AGFGEFQ---PLDPENTTEARSRNRRIELKLTER 343 >gi|239832801|ref|ZP_04681130.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239825068|gb|EEQ96636.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 343 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQPLD 322 Query: 323 ASDPMN--SANRRIDILVEDR 341 ASD + + NRRI++ + +R Sbjct: 323 ASDTADARAKNRRIELKLTER 343 >gi|167624989|ref|YP_001675283.1| flagellar motor protein MotB [Shewanella halifaxensis HAW-EB4] gi|167355011|gb|ABZ77624.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 322 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 29/162 (17%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + KK++ L+ + D ++ E+ I+I I R F S P Sbjct: 163 KINEQVKKMAQELNKEIVDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKP 216 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V++++GE+L ++++ GHTD N + NW LS RA + L+ Sbjct: 217 VVRRVGELLKDVPGIVTVSGHTDDWKISNELYSSNWDLSSKRAVAVAHELI--------- 267 Query: 310 SKISGFAHHRLKI----ASDPM---NSA-----NRRIDILVE 339 ++ GF R+K+ +S P+ NS+ NRR++I +E Sbjct: 268 -RVKGFDQQRMKVVGMASSAPLVENNSSANRARNRRVEIAIE 308 >gi|114571128|ref|YP_757808.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114341590|gb|ABI66870.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 329 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P ++Q E+ + VI I GHTD P R NW LS RA S + GV Sbjct: 233 PIADAIIQLTDEIPSDLEWVIRIDGHTDPVPIRTTYPSNWHLSAARAISVVNWMEDLGVP 292 Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 +R+ +GF H + S N+ NRRI++ Sbjct: 293 SNRLVA-AGFGEHYPMVEGRSAEANARNRRIEL 324 >gi|90422320|ref|YP_530690.1| hypothetical protein RPC_0800 [Rhodopseudomonas palustris BisB18] gi|90104334|gb|ABD86371.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 341 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 11/116 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIARDNWRL 287 FD + PE L K+ L A V+ + GHTD P + NW L Sbjct: 227 FFDTGQAQLKPEGRAELDKLASALIDLDKKIPAEIAWVLRVDGHTDVRPITGAFKSNWEL 286 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIAS-DPMNSANRRIDILVEDR 341 S RA S Q L+ GV R+ +GF + L +A+ + NRRI++ + +R Sbjct: 287 SSGRAISVVQYLVSLGVPPQRLVA-AGFGEFQPLDVAATEEAYKRNRRIELKLTER 341 >gi|229543005|ref|ZP_04432065.1| OmpA/MotB domain protein [Bacillus coagulans 36D1] gi|229327425|gb|EEN93100.1| OmpA/MotB domain protein [Bacillus coagulans 36D1] Length = 274 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 66/325 (20%), Positives = 133/325 (40%), Gaps = 67/325 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KK+ + N +W + Y+DF+T+L+A F+V++ +++ D Q F F K L Sbjct: 3 KKRKKRQEEEGNSEAWLLPYSDFLTLLLALFIVLFAMSSID-------AQKFQKFSKVL- 54 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+F S ++ + S D ST+ +++ + N + Sbjct: 55 ---NGVFVG------------GTSFFDYTKQTSGD--DNSTSDTEKFLEQKKNDAQKNGD 97 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + K++ T D+ G+ + + ++ IN +A + L Sbjct: 98 STTNGSKSNSTTDASNGQGDAQLKETQQRIN-------------TYIAHNK------LEG 138 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K ++L+G G+LI+I R+ +FD + E I + + Sbjct: 139 KFETSLTG----------------EGLLITI---RDNVLFDSGKAEVRKEDIKTAKALSN 179 Query: 258 VLAHS-TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I + GHTD P N + + NW LS+ RA + ++++++ + G+ Sbjct: 180 LLVMDPPRSIIVSGHTDNVPIHNSVFQSNWDLSVMRATNFLKIILENKNLNPKYFSAKGY 239 Query: 316 AHHRLKIASDPMN--SANRRIDILV 338 + ++D + NRR+++L+ Sbjct: 240 GEYHPIASNDTQGGRAKNRRVEVLI 264 >gi|209965120|ref|YP_002298035.1| hypothetical protein RC1_1826 [Rhodospirillum centenum SW] gi|209958586|gb|ACI99222.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW] Length = 344 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 12/84 (14%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD+ P R+ AR NW LS RA + + L+ G+ DR++ +GF ++ Sbjct: 266 VLRVDGHTDSVPIRS-ARFPSNWELSTARATAVVKYLIDQGIPADRLAA-AGFGQYQ--- 320 Query: 323 ASDPMNSA-----NRRIDILVEDR 341 DP SA NRRI+I ++ R Sbjct: 321 PLDPGTSAEALARNRRIEIKLDAR 344 >gi|332704885|ref|ZP_08424973.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332555034|gb|EGJ52078.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 222 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR G +I I++ FD S+ P+ VL + VL + + + G Sbjct: 92 LQGTGVSVTRQGDMI-ILNMPGNVTFDTGSAGIKPQFFEVLNSVAIVLKEYEKTYVDVLG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 HTD++ N+ N RLS DRA S Q L+ GV ++R + G ++ IA + Sbjct: 151 HTDSTGSMNL---NMRLSQDRAQSVAQYLISQGVQQERF-LVRGMGPNQ-PIADNSTAAG 205 Query: 328 NSANRRIDI 336 S NRR++I Sbjct: 206 RSQNRRVEI 214 >gi|323700140|ref|ZP_08112052.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323460072|gb|EGB15937.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 273 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 21/154 (13%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L L +N+ + + F ++R + I+ + +F PE L + +L Sbjct: 88 LQSLKWENVSQDINFSSSR---FVQILSINASLLFGPDGYTLSPEGRATLDRFLPLLEQV 144 Query: 263 TEVISIRGHTDASPFRNIARDN-------------WRLSLDRAYSAYQVLMKSGVSEDRI 309 + + GHT S R+ N W+LSL+R + Y+ L+ G+S D + Sbjct: 145 KYPLLLAGHT--SDLRDELGMNYQPGDDSRNPDLSWKLSLNRTLAIYRYLLDKGMSPDML 202 Query: 310 SKISGFAHHRLKIASD-PMNSA-NRRIDILVEDR 341 ++ GF +R D P N A NRR+DI+++ R Sbjct: 203 -RVEGFGKYRPHYPPDTPENRARNRRVDIVLDKR 235 >gi|167741000|ref|ZP_02413774.1| hypothetical protein Bpse14_23241 [Burkholderia pseudomallei 14] Length = 433 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ + I +G+L E R S++ R MF S L E VL K+ +A Sbjct: 296 LSILLKNEIARGLLTVDEDDRR----SVVVFRGDSMFRSGESRVLSEIEPVLDKVAREVA 351 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHH 318 +++ GH+D P R +N LS RA Q+L++ G DRI S+ G A Sbjct: 352 RVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQP 411 Query: 319 RLKIASDPMNSANRRIDILV 338 + A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|163781627|ref|ZP_02176627.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1] gi|159882847|gb|EDP76351.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1] Length = 235 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 188 RKKRLQDLAKKIS----STLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 R K+ +L K+I+ LS G+ AD +V G T + + + R P+ S Sbjct: 84 RVKKFAELKKEITKIKEELLSMGIEADYLVTG-------TCMKLRVNTNRLYPL---GSE 133 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301 P P+ + + L + I+ G+TD P N NW LS RA S ++ + Sbjct: 134 EPYPQAKELFLNMCSRLKPFSLPITFEGYTDNMPISNPRFPSNWELSAMRAVSVLRLFIT 193 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVE 339 G ++ +S + HH + P N NRRI+ ++ Sbjct: 194 CGYPQELLSAVGYGEHHPIAPNDTPANRERNRRIEFCIK 232 >gi|83716132|ref|YP_438328.1| hypothetical protein BTH_II0126 [Burkholderia thailandensis E264] gi|167614770|ref|ZP_02383405.1| hypothetical protein BthaB_00705 [Burkholderia thailandensis Bt4] gi|257141357|ref|ZP_05589619.1| hypothetical protein BthaA_19439 [Burkholderia thailandensis E264] gi|83649957|gb|ABC34021.1| OmpA domain protein [Burkholderia thailandensis E264] Length = 433 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 4/138 (2%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 296 LSILLKNEIARGLL--TVDEDDARSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVARV 353 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G D I S+ G A Sbjct: 354 GGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHIRSEGRGDAQPVA 413 Query: 321 KIASDPMNSANRRIDILV 338 + + S NRR++I V Sbjct: 414 ENTTPAGRSRNRRVEIAV 431 >gi|311067881|ref|YP_003972804.1| flagellar motor protein MotB [Bacillus atrophaeus 1942] gi|310868398|gb|ADP31873.1| flagellar motor protein MotB [Bacillus atrophaeus 1942] Length = 262 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR 278 T G+LI+I +++ FD + + I + ++I ++L + I I GHTD P + Sbjct: 131 TDEGLLITI---KDSIFFDSGKATIREQDIPLAEEISDLLVLNPPRNIIISGHTDNMPIK 187 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N + NW LS+ RA + +L+++ + ++ GF ++ +D S NRR++ Sbjct: 188 NSQFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGFGEYKPVATNDTAEGRSKNRRVE 247 Query: 336 ILVEDR 341 +L+ R Sbjct: 248 VLILPR 253 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89 SW + YAD +T+L+A F+V++ ++ D K + + FN + T G+ D + P Sbjct: 17 SWLVPYADILTLLLALFIVLFASSSVDAAKFKMLSKSFN----EVFTGGTGVMDYSSVTP 72 Query: 90 PERSSQNKID 99 PE S Q ID Sbjct: 73 PE-SEQQGID 81 >gi|302343736|ref|YP_003808265.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301640349|gb|ADK85671.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 260 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294 +F S+ P + L ++ V+ +S+ GHTD P+R +DNW LS RA S Sbjct: 120 LFAPGSAKLSPNILPFLDEVAAVIKDRAYPLSVYGHTDDEPWRGKGGQDNWTLSAQRALS 179 Query: 295 AYQVLMKSGVSEDRISKIS 313 L+ GVS R++ Sbjct: 180 VVAHLVSRGVSASRLAAFG 198 >gi|229098968|ref|ZP_04229903.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] gi|229117997|ref|ZP_04247357.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228665446|gb|EEL20928.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228684466|gb|EEL38409.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] Length = 233 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 9/124 (7%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G++++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 106 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDTVPIA 162 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334 N NW LS RA + QVL+++ + + S I G+ +R +D P A NRR+ Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-GYGEYRSIAQNDTPEGKAKNRRV 221 Query: 335 DILV 338 ++ + Sbjct: 222 EVFI 225 >gi|319790061|ref|YP_004151694.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] gi|317114563|gb|ADU97053.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] Length = 233 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F P P+ I ++ +I L ++I G+TD +P NW LS RA + Sbjct: 125 LFPPGEDRPYPQAIPIIMEICRKLKELDLPLTIEGYTDNTPIHTKRFPSNWELSAARATA 184 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 ++ ++ G ++S +H + + P A NRRI+I++ Sbjct: 185 ILRLFIQCGYDPKKLSAAGCGPYHPIAPNNTPEGRAKNRRIEIVI 229 >gi|261409603|ref|YP_003245844.1| OmpA/MotB domain-containing protein [Paenibacillus sp. Y412MC10] gi|261286066|gb|ACX68037.1| OmpA/MotB domain protein [Paenibacillus sp. Y412MC10] Length = 271 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 GI I++ D+ +FD + P VL K+ + +SI GHTD P + Sbjct: 149 GIAITLSDRF---LFDVGKAELKPGAAPVLGKLASLFGDLNTTVSIEGHTDNVPIGRYSS 205 Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 +DNW LS RA S + ++ + + +G+A R A+ NRR++I V Sbjct: 206 YKDNWELSGARAMSVLRFFLEHSKLDPAGFQYAGYADTRPAADNATAEGKQKNRRVEITV 265 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---GKNLMTASKGIF----- 84 W I YAD +T+L+ FF+VM+ ++ D + K + Q G +++ GI Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGITGTADT 81 Query: 85 -DEQNPPERSSQNK 97 + +NPP + + ++ Sbjct: 82 ENHKNPPPKPAADE 95 >gi|319651875|ref|ZP_08005999.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2] gi|317396434|gb|EFV77148.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2] Length = 246 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 12/183 (6%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 D + SI EN P E+I +L L + + S L + + K ++ T Sbjct: 60 DFQPSIIPAEN----PEQNEEIKENGDSGQLDSLDELLMEIQSFLDENGLEKVIVANRTE 115 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G+++ + +Q +F+ + + + L K+G +LA+ ++ + GHTD P Sbjct: 116 RGVVLVLQEQV---LFESGDASLIDSSYSFLDKVGTLLANMPNLVKVEGHTDDRPITTYR 172 Query: 282 R-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRIDIL 337 NW LS RA + + L K + R + G+ R + S P N NRR++I+ Sbjct: 173 YPSNWELSAARASTVIRYLTEKHNLDSHRFMAV-GYGETRPIVPNSGPENWEKNRRVEII 231 Query: 338 VED 340 + D Sbjct: 232 ISD 234 >gi|149193957|ref|ZP_01871055.1| OmpA/MotB [Caminibacter mediatlanticus TB-2] gi|149135910|gb|EDM24388.1| OmpA/MotB [Caminibacter mediatlanticus TB-2] Length = 256 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 266 ISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I IRG+TD P + RDNW LS RA S ++L+K GV ++S + +H + Sbjct: 163 IQIRGYTDNLPPPKNSPYRDNWDLSAARALSVLKILIKDGVDPKQLSAAAYGEYHPIASN 222 Query: 324 SDPMN-SANRRIDI 336 P NRR++I Sbjct: 223 LTPEGRDKNRRVEI 236 >gi|120603975|ref|YP_968375.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|120564204|gb|ABM29948.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] Length = 259 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 26/148 (17%) Query: 210 NIVKGVLFETTRTGI-------LISIIDQRNT--PMFDKSSSIPLPETIVVLQKIGEVLA 260 +I +G+LF++ + L I +Q +T P + + P P+ K G + Sbjct: 102 HIPEGILFDSGSAALPPEGGRTLDIIAEQLSTLLPCYSGKADAPAPDECRDNYKPGRL-- 159 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG--------VSEDRIS 310 E + + GHTD P R +DNW LS RA + Y+ L+ + D + Sbjct: 160 ---EAVFVEGHTDNVPMPPRGGIQDNWDLSTKRAVTTYRHLLGHAPTLAAFVNLDGDPLF 216 Query: 311 KISGFAHHRLKIASD-PMNSA-NRRIDI 336 +SG+A R + D P A NRRID+ Sbjct: 217 GVSGYAASRPRNPHDTPTPDAQNRRIDL 244 >gi|150019084|ref|YP_001311338.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149905549|gb|ABR36382.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052] Length = 251 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 13/157 (8%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +++L D+ KK+ LV ++ +KG V+ G++IS D + F+ + P+ Sbjct: 92 REKLSDVKKKVDE----LVNNSELKGSVITSIQERGLIISFND---SVFFNSGQAAIKPD 144 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSG-VS 305 L I ++L I + GHTD + NW+LS RA + + L+ G V Sbjct: 145 WQNKLISISKILNGIDNYIRVEGHTDNVVINTDYFHSNWQLSAVRASNVVEFLIYQGNVK 204 Query: 306 EDRISKISGFAHHR--LKIASDPMNSANRRIDILVED 340 +R+S + G+ +R ++ +ANRR+DI++ D Sbjct: 205 PERLSSV-GYGEYRPVKSNTTEEGKAANRRVDIVILD 240 >gi|229105135|ref|ZP_04235786.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] gi|228678316|gb|EEL32542.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] Length = 233 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 9/124 (7%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G++++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 106 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDTVPIA 162 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334 N NW LS RA + QVL+++ + + S I G+ +R +D P A NRR+ Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-GYGEYRSIAPNDTPEGKAKNRRV 221 Query: 335 DILV 338 ++ + Sbjct: 222 EVFI 225 >gi|86359103|ref|YP_470995.1| hypothetical protein RHE_CH03512 [Rhizobium etli CFN 42] gi|86283205|gb|ABC92268.1| probable outer membrane protein [Rhizobium etli CFN 42] Length = 343 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS +RA S + L+ GV DR+ +GF + Sbjct: 264 VLRVDGHTDNVPLAGTGRYRDNWELSSERAISVVKFLIGQGVPADRLVA-AGFGEFQPIA 322 Query: 323 ASDP--MNSANRRIDI 336 D + NRRI++ Sbjct: 323 PGDTPDARATNRRIEL 338 >gi|228903029|ref|ZP_04067168.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] gi|228967605|ref|ZP_04128628.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228792096|gb|EEM39675.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228856622|gb|EEN01143.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] Length = 234 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|229072015|ref|ZP_04205225.1| OmpA/MotB domain protein [Bacillus cereus F65185] gi|229081763|ref|ZP_04214256.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|228701608|gb|EEL54101.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|228711174|gb|EEL63139.1| OmpA/MotB domain protein [Bacillus cereus F65185] Length = 234 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|260364262|ref|ZP_05776961.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030] gi|308113750|gb|EFO51290.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030] Length = 278 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F + S+ P+ ++++I E++ ++ I GHTD + R NW Sbjct: 187 VIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 246 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 LS RA S Q + K+ GF+H RL++ Sbjct: 247 LSSQRAVSVAQ----------EMEKVRGFSHQRLRV 272 >gi|298505133|gb|ADI83856.1| OmpA family outer membrane lipoprotein [Geobacter sulfurreducens KN400] Length = 289 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD-ASPFRNIAR---DNWRLSLD 290 +FD + P + +LQK+ E+L T+ I I GHTD N+A+ NW LS Sbjct: 175 LFDSGKAEVKPAGMDILQKVVEILKDVTDKAIRIEGHTDNVQIVGNLAKRFPSNWELSSA 234 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILV 338 RA + + L G+ +S ++ +H + +D + NRRI+I++ Sbjct: 235 RAINVTRFLQSRGIDPAVLSAVAYGEYHPVAPNDTDEGKAKNRRIEIIL 283 >gi|227823348|ref|YP_002827320.1| hypothetical protein NGR_c28210 [Sinorhizobium fredii NGR234] gi|227342349|gb|ACP26567.1| flagellar motor protein [Sinorhizobium fredii NGR234] Length = 343 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+ A V+ + GHTD P R DNW LS RA S + L+ GV DR+ +G Sbjct: 256 EIPAEINWVLRVDGHTDNVPLSGTGRFADNWELSSARATSVVKFLISRGVPADRLVA-AG 314 Query: 315 FAHHRLKIASDPMN--SANRRIDI 336 F ++ + + + NRRI++ Sbjct: 315 FGEYQPIAVGESLEARAQNRRIEL 338 >gi|329928770|ref|ZP_08282619.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5] gi|328937551|gb|EGG33969.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5] Length = 271 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 GI I++ D+ +FD + P VL K+ + +SI GHTD P + Sbjct: 149 GIAITLSDRF---LFDVGKAELKPGAAPVLGKLASLFGDLNTTVSIEGHTDNVPIGRYSS 205 Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 +DNW LS RA S + ++ + + +G+A R A+ NRR++I V Sbjct: 206 YKDNWELSGARAMSVLRFFLEHSKLDPGGFQYAGYADTRPAADNATAEGKQKNRRVEITV 265 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---GKNLMTASKGIF----- 84 W I YAD +T+L+ FF+VM+ ++ D + K + Q G +++ GI Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGITGTADT 81 Query: 85 -DEQNPPERSSQNK 97 + +NPP + + ++ Sbjct: 82 ENHKNPPPKPAADE 95 >gi|228974615|ref|ZP_04135181.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981210|ref|ZP_04141510.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|228778410|gb|EEM26677.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|228785018|gb|EEM33031.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 234 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|228923254|ref|ZP_04086544.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954780|ref|ZP_04116801.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960776|ref|ZP_04122414.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048216|ref|ZP_04193785.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|229111973|ref|ZP_04241517.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|229129795|ref|ZP_04258762.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] gi|229147069|ref|ZP_04275429.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|229152704|ref|ZP_04280891.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|229180776|ref|ZP_04308114.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|229192709|ref|ZP_04319668.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|228590799|gb|EEK48659.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|228602754|gb|EEK60237.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|228630767|gb|EEK87409.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|228636457|gb|EEK92927.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|228653711|gb|EEL09582.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] gi|228671537|gb|EEL26837.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|228723203|gb|EEL74579.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|228798911|gb|EEM45887.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804900|gb|EEM51498.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836460|gb|EEM81811.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|88812420|ref|ZP_01127670.1| flagellar motor protein [Nitrococcus mobilis Nb-231] gi|88790427|gb|EAR21544.1| flagellar motor protein [Nitrococcus mobilis Nb-231] Length = 312 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L L I +G L E + G I +I R F S+ + + ++KIG+ + + Sbjct: 149 LQSLFRQEIERG-LIEVAQIGAQI-VIRVREHGSFPSGSAKLIKPFLPAVRKIGQAIRMT 206 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320 + I GHTD P N R NW LS RA S + L V +RI+ ++G A R Sbjct: 207 EGQVIIAGHTDNVPIHNAQFRSNWDLSAARAISLLRALGAVEAVDANRIT-VAGHADTRP 265 Query: 321 KIASD-PMNSA-NRRIDILVEDRQG 343 +++D P + A NRR++I++ + G Sbjct: 266 IVSNDTPRHRARNRRVEIILVNGNG 290 >gi|303248961|ref|ZP_07335208.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489684|gb|EFL49620.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 261 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 7/165 (4%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 K + A++ +++ Q+L + ++ L + + + R + I+ +D+ +F Sbjct: 54 KAEARAVELERKTQELQTAYDALVADLRGEVDSRDIRVRQFREKLEINFVDKI---LFAS 110 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297 S+ P +L+K+G VLA + I + GHTD++P + + NW LS R+ S + Sbjct: 111 GSAEITPRGREILRKVGGVLAKVKDKSIYVVGHTDSNPIHSALYPSNWELSTARSASVIR 170 Query: 298 VLMKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 L +S GV+ +R + + F A+ NRR+DI+V + Sbjct: 171 FLSESGGVTPERFTAMGRAFYQPVASNATPEGRHENRRVDIIVAE 215 >gi|14331084|emb|CAC40971.1| hypothetical protein [Vibrio pommerensis] Length = 378 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ S+ P ++ LQ + L E V+ I GHTD+ + N RLS RA S Sbjct: 262 LFETGSTSLSPSLMLQLQPLLARLKQYPETVVEISGHTDSKGSDTL---NQRLSEQRAQS 318 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDIL 337 L+ GV +RI+++ G+ L +AS+ S NRR++I+ Sbjct: 319 VANYLISKGVDPERITRVVGYGES-LPVASNDTESGRAQNRRVEIV 363 >gi|302037673|ref|YP_003797995.1| flagellar motor protein MotB [Candidatus Nitrospira defluvii] gi|300605737|emb|CBK42070.1| Flagellar motor protein MotB [Candidatus Nitrospira defluvii] Length = 259 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 14/157 (8%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R++++ KKI +L+ + D +K + ET I+IS+ + +F + PE + Sbjct: 91 RRMKEIMKKIHPSLALEMPD--IK--IIETGNGTIMISLPESI---LFTSGEARVRPEAL 143 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+ + ++L + I GHTD P R NW LS RA ++ S + E Sbjct: 144 PFLKSLAQILIEMDRHVRILGHTDNVPIRTAQFPSNWELSAVRAVMVVRIF--SELYEVP 201 Query: 309 ISKIS--GFAHHRLKIASDPMN--SANRRIDILVEDR 341 IS +S GFA + +D + NRR++I++ ++ Sbjct: 202 ISHLSATGFADSKPVATNDTPEGRTKNRRVEIIILEK 238 >gi|229132541|ref|ZP_04261390.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] gi|228650887|gb|EEL06873.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] Length = 225 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KKR+ +L KK L V +N V V TG+ I I+D +FD + PE Sbjct: 78 KKRMDELYKK----LKAYVDNNGVSQVNVYREDTGVSIVIVDNL---IFDTGDANVKPEA 130 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 V+ ++ I + GHTD+ P N NW LS RA + L++ +D Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190 Query: 308 RISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + G+A + ++D P N NRR+ I +++ Sbjct: 191 KRLAAVGYADTKPVESNDSPQNWEKNRRVVIYIKE 225 >gi|319781002|ref|YP_004140478.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166890|gb|ADV10428.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 343 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 13/104 (12%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 L + I+ LQK E+ V+ + GHTD P R DNW LS R+ S + L+++ Sbjct: 246 LADAIIELQK--EIPPEINWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIEN 303 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDR 341 GV +R+ +GF + DP ++ NRRI++ + +R Sbjct: 304 GVPANRLVA-AGFGEFQ---PLDPADTEEARNKNRRIELKLTER 343 >gi|213864488|ref|ZP_03386743.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 102 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P+ N + NW LS DRA ++ + L+ G+ ++ ++ G A P Sbjct: 1 GHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPD 60 Query: 328 NSANRRIDILVEDRQG 343 ++ NRRI +LV ++Q Sbjct: 61 DAINRRISLLVLNKQA 76 >gi|207725016|ref|YP_002255413.1| chemotaxis (motility protein b) transmembrane (partial sequence) [Ralstonia solanacearum MolK2] gi|206590245|emb|CAQ37206.1| probable chemotaxis (motility protein b) transmembrane (partial sequence) [Ralstonia solanacearum MolK2] Length = 81 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 15/25 (60%), Positives = 23/25 (92%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINA 56 +WKI YADF+T +MAFFL+MW++++ Sbjct: 26 AWKIAYADFVTAMMAFFLLMWLLSS 50 >gi|167629589|ref|YP_001680088.1| flagellar motor protein motb, putative [Heliobacterium modesticaldum Ice1] gi|167592329|gb|ABZ84077.1| flagellar motor protein motb, putative [Heliobacterium modesticaldum Ice1] Length = 298 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 10/102 (9%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 +W I YAD +T+L+A F+VM+ ++ D + KKA+E F G + + A+ D + Sbjct: 15 TWLIPYADMLTLLLALFIVMFAVSQVDTKKFEALKKAMESVFK--GGSGIMANPTPLDTE 72 Query: 88 N----PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 PP+ S + + D KN VD I +KQ + Sbjct: 73 GASDAPPDMSVMESLKETRDLQEIKNRVDRYIEEKGLEKQVE 114 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 9/157 (5%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++K + LQ++ ++ + + K V R G+ IS R+ +FD + Sbjct: 86 SLKETRDLQEIKNRVDRYIE---EKGLEKQVETNLVREGLQISF---RDAALFDSGKADL 139 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 E + L I + L + + + I GHTD P NW LS RA + + ++ Sbjct: 140 KREALPALDLIADTLHNLSNEVRIAGHTDNLPISTAEFPSNWDLSAKRALNVMKYILNDK 199 Query: 304 VSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 + G+ + K +D P A NRR+++++ Sbjct: 200 RNNPVKFTAVGYGEYHPKATNDTPEGRAQNRRVEVMI 236 >gi|49187402|ref|YP_030654.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str. Sterne] gi|227817292|ref|YP_002817301.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684] gi|254736614|ref|ZP_05194320.1| chemotaxis protein MotB [Bacillus anthracis str. Western North America USA6153] gi|254741652|ref|ZP_05199339.1| chemotaxis protein MotB [Bacillus anthracis str. Kruger B] gi|49181329|gb|AAT56705.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str. Sterne] gi|227002900|gb|ACP12643.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684] Length = 156 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 24 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 80 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 81 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 139 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 140 KNRRVEVFI 148 >gi|83642951|ref|YP_431386.1| flagellar motor protein [Hahella chejuensis KCTC 2396] gi|83630994|gb|ABC26961.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 275 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDR 308 VL K+ +VLA I + GHTD P ++ R NW LS RA S L+ G + R Sbjct: 177 VLMKVTDVLADCKGDILVTGHTDDRPIDSVKFRSNWDLSAARAVSVVHRLVLDGRLDASR 236 Query: 309 ISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342 +S I G A R + +D + NRR++I +E+ + Sbjct: 237 VSAI-GQAETRPLVPNDTDEHRAQNRRVEIHIENAE 271 >gi|254497489|ref|ZP_05110282.1| flagellar motor protein MotD [Legionella drancourtii LLAP12] gi|254353304|gb|EET12046.1| flagellar motor protein MotD [Legionella drancourtii LLAP12] Length = 255 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 +D ++ +F + E +V L +I L S ++SI G+TD P NW L Sbjct: 115 LDIKSGALFGSGDADLKAEALVKLMQIAGKLKKSHAIVSIEGYTDNVPIETPQYPSNWEL 174 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 S RA S +VL G+ RI ++G+ + IA +D + NRR+ I++ Sbjct: 175 SATRAASVGRVLNAYGIDSHRI-MVTGYG-DQYPIADNVTDVGRALNRRVSIII 226 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 W + YADF+T+L AFF+VM+ I++ + K++ + N Sbjct: 17 WIVSYADFITLLFAFFVVMYAISSLNTSKYKSLSEGMN 54 >gi|229019729|ref|ZP_04176535.1| OmpA/MotB domain protein [Bacillus cereus AH1273] gi|229025955|ref|ZP_04182345.1| OmpA/MotB domain protein [Bacillus cereus AH1272] gi|228735356|gb|EEL85961.1| OmpA/MotB domain protein [Bacillus cereus AH1272] gi|228741574|gb|EEL91768.1| OmpA/MotB domain protein [Bacillus cereus AH1273] Length = 234 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKELSNLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSTI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|325982116|ref|YP_004294518.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531635|gb|ADZ26356.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 237 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 I E+ A I I GHTD P I+ DN LS RA + VL+ GV RIS I G Sbjct: 146 IKEISASPNSRILIEGHTDNIPTGKISSDNMDLSRRRARAIANVLILHGVPATRISII-G 204 Query: 315 FAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + R + A+D + NRR+++ + +G Sbjct: 205 YGDKRPIVSNATDEGRAKNRRVEVKLMPPEG 235 >gi|124516288|gb|EAY57796.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum rubarum] Length = 261 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 + + VL+KI +LA + I + G+TD P R +R +NW LS RA + L++ G Sbjct: 133 KAVPVLRKIAALLARTNHEIRVHGYTDNQPIRT-SRYPNNWALSTMRAVNVLTRLLEYGS 191 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQ 342 + +GF R IAS+ NRR++IL+ +R+ Sbjct: 192 IDPGRMGAAGFGKFR-PIASNLTPEGREKNRRVEILIMNRE 231 >gi|119714995|ref|YP_921960.1| OmpA/MotB domain-containing protein [Nocardioides sp. JS614] gi|119535656|gb|ABL80273.1| OmpA/MotB domain protein [Nocardioides sp. JS614] Length = 302 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 77/333 (23%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK-- 74 +KK + +N W + YAD +T+LM F+VM+ ++ D+ A++ FG Sbjct: 8 RKKPPEEPEHDNHERWLVTYADMLTLLMVLFIVMFAMSQVDEAKYNALKSGLAEGFGAES 67 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 ++MT S + +++++ + D + + F Sbjct: 68 SIMTGSTSV------------------LEDNLAETGPDY-------------VSSQAFQA 96 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + Q + + ++T +E+ + L + K L + K+ + A+ R Sbjct: 97 MPADQQQLVRAAVT--AEERRRLQAQYAEAAAEAKR----LEAVRKQLMKAL----RAAG 146 Query: 195 LAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 LAK + +T+ GLV + + V+FE I+ + R + D Sbjct: 147 LAKDVQATIDDRGLVVSLVSRHVVFEPD-----IAQLSARGERVVD-------------- 187 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRI 309 + VL + I GHT+ P R A D W LS RA + + L + G V + R+ Sbjct: 188 -TLSRVLRDVPNALRIDGHTNQEPVKPRFFATD-WDLSAARAVTVLRRLNEHGDVPKKRL 245 Query: 310 SKISGFAHHRLKIASDPMNSA----NRRIDILV 338 S +S F + R + DP N+R+DI+V Sbjct: 246 S-LSAFGNERPLV--DPATPGSQEINKRVDIVV 275 >gi|303248999|ref|ZP_07335244.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489585|gb|EFL49525.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 317 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +K L+D+ K++++ L GL V G+ +++ R FD +S+ P Sbjct: 165 RKSLEDIRKELTAKL-GL----DTSAVEIVPRENGVELNL---RGAAFFDLASAEIKPAA 216 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+ I L+ + +++ GHTD P + + NW LS RA + L+ GV + Sbjct: 217 LPLLRDIAATLSGTPYKVTVEGHTDNLPIESWLYPSNWELSSARASRVARFLIDGGVPRN 276 Query: 308 RISKISGFAHHRLKIASD-------PMNSA-NRRIDILV 338 + ++ G A + +D P N A NRR+ ILV Sbjct: 277 HL-RVEGLADTQPVAPNDDEAGRPIPENQAKNRRVVILV 314 >gi|319778099|ref|YP_004134529.1| type IV / vi secretion system protein, dotu family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171818|gb|ADV15355.1| type IV / VI secretion system protein, DotU family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 440 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 17/86 (19%) Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I++ GHTD+ P + N N RLS RA + +L+++GV DR+ H + A Sbjct: 361 ITVVGHTDSVPLQKTNPLSTNQRLSEARAQTIADMLVQNGVPRDRV-------HSEGRAA 413 Query: 324 SDPM--------NSANRRIDILVEDR 341 +DP+ + NRR+++LVE R Sbjct: 414 TDPVATDSTREGRALNRRVEVLVEKR 439 >gi|229175219|ref|ZP_04302735.1| OmpA/MotB domain protein [Bacillus cereus MM3] gi|228608355|gb|EEK65661.1| OmpA/MotB domain protein [Bacillus cereus MM3] Length = 234 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|254687000|ref|ZP_05150858.1| chemotaxis protein MotB [Bacillus anthracis str. CNEVA-9066] gi|254724563|ref|ZP_05186346.1| chemotaxis protein MotB [Bacillus anthracis str. A1055] gi|254754750|ref|ZP_05206785.1| chemotaxis protein MotB [Bacillus anthracis str. Vollum] gi|254757582|ref|ZP_05209609.1| chemotaxis protein MotB [Bacillus anthracis str. Australia 94] Length = 153 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 21 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 77 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 78 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 136 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 137 KNRRVEVFI 145 >gi|327404103|ref|YP_004344941.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319611|gb|AEA44103.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 293 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R +L KK++ TL + + E + +S+ D+ +F S+ P+ + Sbjct: 129 RQDELTKKLNQTLRDALVGFNSDELTMEIRDGKVYVSMSDKL---LFKSGSTGVEPKGVE 185 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSED 307 L+ + +VL + ++ I + GHTD P + + +DNW LS+ RA S ++L K V+ Sbjct: 186 ALKVLADVLNKNPDIQILVEGHTDNVPIKTAVFKDNWDLSVARATSITRMLNEKYAVAAT 245 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R++ SG + K ++D + NRR +I++ Sbjct: 246 RMT-ASGRGEYFPKASNDTTEGKAKNRRTEIIL 277 >gi|150397861|ref|YP_001328328.1| hypothetical protein Smed_2663 [Sinorhizobium medicae WSM419] gi|150029376|gb|ABR61493.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 342 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+ A V+ + GHTD I R DNW LS RA S + L+ GV DR+ +G Sbjct: 255 EIPAEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AG 313 Query: 315 FAHHRLKIASDPMN--SANRRIDI 336 F ++ SD + NRRI++ Sbjct: 314 FGEYQPIAPSDTQEARAQNRRIEL 337 >gi|262402758|ref|ZP_06079319.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586] gi|262351540|gb|EEZ00673.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586] Length = 304 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 72/334 (21%), Positives = 128/334 (38%), Gaps = 79/334 (23%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFD 85 W +AD M++LM FF+++ + D K I FG +N + KG I Sbjct: 2 WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61 Query: 86 EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 ++ P R ID+ + + IT+ +++ + G +++ QR Sbjct: 62 QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGDSDRAGGNQR----------------- 104 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 DS K L E S + +N + Q AK +S + Sbjct: 105 ------DSGK---LTGGQSAESSTQENQNT--------------QSDMQQQQAKAMSEQM 141 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVVLQKIGE 257 VA++I K + E + I + + Q R F + S+ P+ ++++I + Sbjct: 142 E-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPLVRQIAD 200 Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ + + GHTD + R NW LS RA S Q + K+ GF Sbjct: 201 LVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFD 250 Query: 317 HHRLKIA------------SDPMNSANRRIDILV 338 H RL++ ++ + NRR++I + Sbjct: 251 HQRLQVRGMADTQPLGPNDTEAQRALNRRVEISI 284 >gi|269836612|ref|YP_003318840.1| OmpA/MotB domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785875|gb|ACZ38018.1| OmpA/MotB domain protein [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E T+ GI+I + + + +F PE VL I ++ + + GHTD P Sbjct: 106 ELTQEGIVIHLAE---SVLFPPGEVQLRPEAHRVLADIAAIIGPMPFPVRVEGHTDNVPP 162 Query: 278 RNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333 N DNW LS RA S + L GV +R+ + G+A HR + + + NRR Sbjct: 163 ANPNYPDNWALSTMRAVSTVRFLSDVQGVPAERLVAV-GYAEHRPRADNRTLEGRRKNRR 221 Query: 334 IDILV 338 +D+++ Sbjct: 222 VDLVI 226 >gi|228917149|ref|ZP_04080707.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929558|ref|ZP_04092577.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935820|ref|ZP_04098632.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948234|ref|ZP_04110518.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093607|ref|ZP_04224708.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] gi|229124075|ref|ZP_04253267.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] gi|228659377|gb|EEL15025.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] gi|228689816|gb|EEL43622.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] gi|228811592|gb|EEM57929.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823877|gb|EEM69697.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830137|gb|EEM75755.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842567|gb|EEM87657.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|229186744|ref|ZP_04313902.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] gi|228596757|gb|EEK54419.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] Length = 234 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 217 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 218 KNRRVEVFI 226 >gi|330721195|gb|EGG99305.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC2047] Length = 307 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L +L+ ++ S LV D + + T I IS+ + +F+ S+ +++ V Sbjct: 110 LSELSDQVESAFGDLVRDGEIT---ISGSETWIEISL---SSGLLFNSGSANLNRQSLPV 163 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L++I +L+ + + G TD P ++ I NW LS R+ + ++L +SGV +R++ Sbjct: 164 LEEISSILSGYENPVHVEGFTDDIPIQSGIFPSNWELSAARSAAVVRLLSESGVEPNRLA 223 Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILV 338 + G+ + IAS+ NRR+ ++V Sbjct: 224 AV-GYGQFQ-PIASNESAEGRGKNRRVALIV 252 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W I Y+DFMT+L AFF+VM+ I++ ++ K + + Sbjct: 18 WLISYSDFMTLLFAFFVVMYSISSVNEGKYKVLSE 52 >gi|75761764|ref|ZP_00741702.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490749|gb|EAO54027.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 256 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|30022590|ref|NP_834221.1| flagellar motor protein MotB [Bacillus cereus ATCC 14579] gi|206969568|ref|ZP_03230522.1| chemotaxis protein MotB [Bacillus cereus AH1134] gi|218232559|ref|YP_002369307.1| flagellar motor protein MotB [Bacillus cereus B4264] gi|296504987|ref|YP_003666687.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171] gi|29898148|gb|AAP11422.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579] gi|206735256|gb|EDZ52424.1| chemotaxis protein MotB [Bacillus cereus AH1134] gi|218160516|gb|ACK60508.1| chemotaxis protein MotB [Bacillus cereus B4264] gi|296326039|gb|ADH08967.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171] Length = 262 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|326942295|gb|AEA18191.1| flagellar motor protein MotB [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|218899667|ref|YP_002448078.1| chemotaxis protein MotB [Bacillus cereus G9842] gi|218542530|gb|ACK94924.1| chemotaxis protein MotB [Bacillus cereus G9842] Length = 262 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|116253762|ref|YP_769600.1| hypothetical protein RL4023 [Rhizobium leguminosarum bv. viciae 3841] gi|115258410|emb|CAK09513.1| putative chemotaxis protein [Rhizobium leguminosarum bv. viciae 3841] Length = 343 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + Sbjct: 264 VLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQGVPADRLVA-AGFGEFQPIA 322 Query: 323 ASDP--MNSANRRIDI 336 D S NRRI++ Sbjct: 323 PGDTPDARSTNRRIEL 338 >gi|317121531|ref|YP_004101534.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885] gi|315591511|gb|ADU50807.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885] Length = 343 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 11/154 (7%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++RL+DL ++++ L D + G + T G+ I DQ FD + PE Sbjct: 182 EERLRDLVDQVNAALR----DAGLGGRASAQLTDRGVAIIFEDQV---FFDLGRADLRPE 234 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++ +LA I + GHTD P + NW LS RA + + L + + Sbjct: 235 GRELLRRLAPILARVPGTILVEGHTDNLPIHSDRFPSNWELSTARATTVVRFLAEQAGLD 294 Query: 307 DRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 R +G+ R + S+ + NRR++I+V Sbjct: 295 PRRLAAAGYGEWRPRFPNTSEANRARNRRVEIVV 328 >gi|241206240|ref|YP_002977336.1| hypothetical protein Rleg_3551 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860130|gb|ACS57797.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 343 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + Sbjct: 264 VLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQGVPADRLVA-AGFGEFQPIA 322 Query: 323 ASDP--MNSANRRIDI 336 D S NRRI++ Sbjct: 323 PGDTPDARSTNRRIEL 338 >gi|23013938|ref|ZP_00053784.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 19/165 (11%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K LQDL ++ ++G ++ V GI++++ + MF S+ PE Sbjct: 61 KTPLQDLRSEMLGQVTGAGVEDTVD---VGRDDKGIVLNLA---SGTMFKPGSAEVRPEI 114 Query: 249 IVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304 + ++++I L + I I+GHTD +P R NW LS RA S +V+ + G+ Sbjct: 115 LPLMKEISATLKQERFLNYQIDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGI 174 Query: 305 SEDRISKISGFAHHRLKIA--SD-----PMNSA-NRRIDILVEDR 341 +R+ K++ A ++ SD P N A NRR++I + R Sbjct: 175 PTNRM-KLAALADTAPRVPNRSDTGKAYPENQAINRRVEIHIYPR 218 >gi|298529615|ref|ZP_07017018.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511051|gb|EFI34954.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 251 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292 +FD PE +LQ + ++ HS + I+I GHTD P R R DNW +S RA Sbjct: 139 LFDLGEVELRPEGEELLQDMRDIFNRHSEQRINIEGHTDNIPPREGGRFEDNWEISSLRA 198 Query: 293 YSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSA-NRRIDILVE 339 + + L + G+ R++ +G+A L + N A NRR++ ++E Sbjct: 199 LNTLRFLKQEGIDPGRMTA-TGYADLQPLYPNTTEGNRARNRRVEFVLE 246 >gi|254457990|ref|ZP_05071417.1| OmpA/MotB [Campylobacterales bacterium GD 1] gi|207085383|gb|EDZ62668.1| OmpA/MotB [Campylobacterales bacterium GD 1] Length = 219 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 11/105 (10%) Query: 240 SSSIPLPETIVVLQKIG---EVLAHSTEVISIRGHTD-ASPFRN-IARDNWRLSLDRAYS 294 S++I + ++ L+++ E L +S +V S++GHTD P N + +DNW LS RA S Sbjct: 94 SATIENEDALLFLKRVALIVEELPNSMQV-SVQGHTDNQGPGNNSVFKDNWELSSARAIS 152 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 Q L+ V RIS SGFA ++ +A++ + NRR+++ Sbjct: 153 VLQELLLDSVDPKRISA-SGFAEYK-PLATNVTEAGREKNRRVEL 195 >gi|304407655|ref|ZP_07389306.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] gi|304343138|gb|EFM08981.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] Length = 263 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNT 234 PP K + K++ Q+L + + + + + +N ++ +F T G+ I + DQ Sbjct: 87 PPEEKPNAALEEEKRKNQEL-ENVFAIIQAYIKNNKLEEKVFVTNEEQGVSIRLSDQF-- 143 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRA 292 +FD + +L K+ + ISI GHTD P + RDNW LS R+ Sbjct: 144 -LFDLGKADLKKAARPILDKLSSLFVKLDHPISIEGHTDNLPIQPGGEFRDNWALSAGRS 202 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 S + + E +I+G+ R IA +D S NRR++I + Sbjct: 203 LSVLRYFTEIAQLEPTKFQIAGYGDTR-PIAPNTTDANRSRNRRVEITI 250 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK--NLMTASKG 82 T +N W I YAD +T+LM FF++++ ++ D + + Q F K +++ G Sbjct: 12 TADNQDRWLITYADLITLLMIFFVILYAMSQVDSKKYEVLAQSLQFEFRKADSVIEGGNG 71 Query: 83 IFDEQNP-----PERSSQNKIDLSIDEHITKN 109 + +P P + + K + +++E KN Sbjct: 72 VTGALDPSIKPAPVKPPEEKPNAALEEEKRKN 103 >gi|254500358|ref|ZP_05112509.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222436429|gb|EEE43108.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 344 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%) Query: 226 ISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-------VISIRGHTD 273 IS++ R + +FD S PE L K+ E +L S + V+ + GHTD Sbjct: 214 ISVVGDRFVFQSEVLFDSGSEDINPEGQQELDKLAEAILELSGQIPDEINWVLRVDGHTD 273 Query: 274 ASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA 330 A P R +NW LS RA S + L++ GV R+ +GF + L+ + P A Sbjct: 274 ARPLSGTGRLRNNWELSAARAISVVRYLIEKGVDPKRLVA-AGFGEFQPLEESETPDALA 332 Query: 331 -NRRIDILVEDR 341 NRRI++ + +R Sbjct: 333 KNRRIELKLTER 344 >gi|150019639|ref|YP_001311893.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906104|gb|ABR36937.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052] Length = 244 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G+ ISI D +F+ + L + +L KI +L I + G+TD P N Sbjct: 116 GLAISIQD---VVLFNSGEADVLKDVSQLLLKISHMLYGLDNEIKVAGYTDNVPINNGKF 172 Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 R NW LS RA + ++ + G+++++IS I + H K A++ + NRR++I V Sbjct: 173 RSNWDLSAMRAINVLNYMVSTGGINQEKIS-IQAYGEHMPKASNATEDGRAKNRRVEIFV 231 >gi|302392384|ref|YP_003828204.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501] gi|302204461|gb|ADL13139.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501] Length = 248 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 31/197 (15%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSK--EKILAMKRKKRLQDLAKKISSTLSGLVADN 210 KG S+DL + ++EN +P L++ +KI + +++ L+D K Sbjct: 62 KGGKTISSSDLITAGVRDENLGMPELNRINQKITSYLQEQELEDEIK------------- 108 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 E T G+ I + +FD + + +L KI +++ I + G Sbjct: 109 ------VEMTERGLTIRFTGK---VLFDIGRATIKEDAYSILDKISGIISEVPNQIMVEG 159 Query: 271 HTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR-LKIASDP 326 HTD P N +R NW LS RA + + ++ ++ ++S +G++ ++ +K P Sbjct: 160 HTDNLPISN-SRFPSNWELSTARATEVVKYFIEENSITPAKLSA-AGYSKYKPVKPNDSP 217 Query: 327 MNSA-NRRIDILVEDRQ 342 N A NRR+D+++ R+ Sbjct: 218 ENRALNRRVDVILLKRE 234 >gi|94969959|ref|YP_592007.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94552009|gb|ABF41933.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 263 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V TT G++IS+ + FD S+ P +I +I +L + + GHTD Sbjct: 129 VTLRTTSDGLVISL---QEIGFFDSGSAKLRPSSISAFGRIASILREKQCTVRVEGHTDP 185 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSA 330 P NW LS RA + L++ G++ +S G+A +D + Sbjct: 186 MPIHTAQYASNWELSTARATGIVKRLIQEYGINPGDLSA-GGYAEFHPVGPNDTAEGRAQ 244 Query: 331 NRRIDILVEDRQG 343 NRR+D+++ QG Sbjct: 245 NRRVDLVILSMQG 257 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 14/67 (20%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+V++ + TD AIEQ F G N Sbjct: 18 WLVSYADFITLLFAFFVVLYASSQTDQKRAAKISSAIEQAFEQLG----------LGTSN 67 Query: 89 PPERSSQ 95 PP +S+ Sbjct: 68 PPGNTSR 74 >gi|126173599|ref|YP_001049748.1| flagellar motor protein MotB [Shewanella baltica OS155] gi|152999879|ref|YP_001365560.1| flagellar motor protein MotB [Shewanella baltica OS185] gi|160874504|ref|YP_001553820.1| flagellar motor protein MotB [Shewanella baltica OS195] gi|217974157|ref|YP_002358908.1| flagellar motor protein MotB [Shewanella baltica OS223] gi|304409470|ref|ZP_07391090.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307303828|ref|ZP_07583581.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|125996804|gb|ABN60879.1| OmpA/MotB domain protein [Shewanella baltica OS155] gi|151364497|gb|ABS07497.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|160860026|gb|ABX48560.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|217499292|gb|ACK47485.1| OmpA/MotB domain protein [Shewanella baltica OS223] gi|304351988|gb|EFM16386.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306912726|gb|EFN43149.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|315266742|gb|ADT93595.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 310 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 72/329 (21%), Positives = 133/329 (40%), Gaps = 46/329 (13%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P W +AD M++LM FF+++ + D K I M Sbjct: 3 KAKCNCPPAGAPMWLATFADLMSLLMCFFVLLLSFSEMDVMKFKQI--------AGSMKY 54 Query: 80 SKGIFDEQNPPERSSQNKIDLS-IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + G+ QNK+++ I + + +++ + G R + + N Q Sbjct: 55 AFGV-----------QNKVEVKDIPKGTSVIALEFRPG---------RPDPTPIEIINQQ 94 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL--- 195 +E + L D + G+D ++S ++ + QD Sbjct: 95 TNEMTEPVL--DYQAGEDDSAGGVQQQSGSQRGGEATATAQEVADAVKAEAAAAQDKINQ 152 Query: 196 -AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 KK++ L+ + D ++ E+ I+I I R F S P V++ Sbjct: 153 EVKKMAQELNKEITDGAIE---IESLGQQIIIRI---REKGAFASGSGFLQPRFKPVVRS 206 Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312 +GE+L +I++ G+TD + + NW LS RA + A++++ G R+ K+ Sbjct: 207 VGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM-KV 265 Query: 313 SGFAHHRLKIASD-PMNSA-NRRIDILVE 339 G A + + +D P N A NRR++I +E Sbjct: 266 VGMASNNPIVPNDSPENRARNRRVEIAIE 294 >gi|257457608|ref|ZP_05622775.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580] gi|257444994|gb|EEV20070.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580] Length = 238 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 20/172 (11%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 +P + K K+L KK + A +I + + +D GI+IS+ ++ Sbjct: 77 MPAMEKGKMLGTALKKAVSIFAPEIKTNKIAVTSD-----------ERGIVISL--AADS 123 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS-PFRNIARDNWRLSLD 290 S+ + + E+ L +I + L+ + I GHTD+S NW LS Sbjct: 124 FFARNSAELNIEESRETLLRIAQFLSDKELAARRFRIEGHTDSSDALSGKWTSNWELSAA 183 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + L G ED+ S I+G+A R +++ + NRR+DI++ D Sbjct: 184 RAINVLHNLTDFGAQEDKFS-IAGYADTRPVYSNETAEGRAYNRRVDIIILD 234 >gi|171318547|ref|ZP_02907697.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MEX-5] gi|171096248|gb|EDT41156.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MEX-5] Length = 460 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ LP + V+++IG+ L + + GHTD P NW+LSLDRA S Sbjct: 350 LFASGSARVLPSQVSVIRRIGDALRDVPGRVIVVGHTDNQPPSPGKPSNWQLSLDRAGSV 409 Query: 296 YQVL 299 Q+L Sbjct: 410 VQLL 413 >gi|196039232|ref|ZP_03106538.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99] gi|218905736|ref|YP_002453570.1| chemotaxis protein MotB [Bacillus cereus AH820] gi|225866485|ref|YP_002751863.1| chemotaxis protein MotB [Bacillus cereus 03BB102] gi|196029859|gb|EDX68460.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99] gi|218538809|gb|ACK91207.1| chemotaxis protein MotB [Bacillus cereus AH820] gi|225788965|gb|ACO29182.1| chemotaxis protein MotB [Bacillus cereus 03BB102] Length = 262 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|163942243|ref|YP_001647127.1| flagellar motor protein MotB [Bacillus weihenstephanensis KBAB4] gi|163864440|gb|ABY45499.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4] Length = 261 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G++++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 134 TEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSNLLVSASPREITVSGHTDNVPIS 190 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334 N NW LS RA + QVL+++ + ++ S + G+ +R +D P A NRR+ Sbjct: 191 NAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPNDTPEGKAKNRRV 249 Query: 335 DILV 338 ++ + Sbjct: 250 EVFI 253 >gi|149191103|ref|ZP_01869362.1| flagellar motor protein MotB [Vibrio shilonii AK1] gi|148835031|gb|EDL52009.1| flagellar motor protein MotB [Vibrio shilonii AK1] Length = 294 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 71/323 (21%), Positives = 135/323 (41%), Gaps = 73/323 (22%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFDEQNP 89 +AD M++LM FF+++ + D K I FG +N + KG I ++ Sbjct: 4 FADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEFR 63 Query: 90 PERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC-KNS 146 P R ID+ + + IT+ +++ G +++ QR + ++ Q ++ KN Sbjct: 64 PGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGNQRDDGK---MTGGQTADRTQKNQ 120 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 + S + +++EN L L E+I+ KK LQ K+ + Sbjct: 121 IGTASAQ--------------SEQENEDLDKL--EEII----KKALQQEIKQ-----GAV 155 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 DN+ + ++ G F + S+ P+ +++++ +++ + Sbjct: 156 EVDNLGQQLVIRIQEKG------------AFPEGSAFLQPKFRPLVRQVADLVKDIPGQV 203 Query: 267 SIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-- 323 + GHTD P + R NW LS RA S Q + K+ GF+H RL++ Sbjct: 204 RVSGHTDNLPLDSELYRSNWDLSSQRAVSVAQ----------EMEKVKGFSHQRLRVLGV 253 Query: 324 --SDPMN--------SANRRIDI 336 ++P+ + NRR++I Sbjct: 254 ADTEPLGPNDTERQRARNRRVEI 276 >gi|311696643|gb|ADP99516.1| flagellar motor protein MotB [marine bacterium HP15] Length = 277 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS-AYQVLMKSG 303 PE I +++++ VL+ T + + G+TD P + R NW LS RA S ++++M Sbjct: 162 PEMIPIIERVVNVLSACTGDVLVSGYTDDRPISSDRYRSNWDLSAARAVSVVHELVMNRQ 221 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 V DR+ + L P N A NRR++I + Sbjct: 222 VPADRVVAAGRAETNPLAPNDSPENRALNRRVEIAI 257 >gi|228941688|ref|ZP_04104235.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228817900|gb|EEM63978.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 153 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 21 FQTKLTEKGLMVTILE---NILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 77 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 78 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 136 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 137 KNRRVEVFI 145 >gi|327395890|dbj|BAK13312.1| inner membrane lipoprotein YiaD precursor [Pantoea ananatis AJ13355] Length = 237 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 +KG TR G I +++ N FD SSS P L + VL + +++ G Sbjct: 109 MKGTGVSVTRQGDNI-VLNMPNNVTFDSSSSSLKPAGANTLTGVAMVLKEYPKTAVNVVG 167 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 HTD++ R + N RLS RA S L+ GV+ DR+ ++ +G +++ + Sbjct: 168 HTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLHTRGAGPDSPVATNSTEAGKA 224 Query: 330 ANRRIDI 336 NRR++I Sbjct: 225 QNRRVEI 231 >gi|78777214|ref|YP_393529.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251] gi|78497754|gb|ABB44294.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251] Length = 240 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%) Query: 255 IGEVLAHSTEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IGE+ +T +S+ GHTD + +DNW LS RA S Q L+ GV RIS Sbjct: 134 IGELPNETT--LSVCGHTDDQGPSVKGPYKDNWELSSARAISVLQELLLDGVDPKRISA- 190 Query: 313 SGFAHHRLKI--ASDPMNSANRRIDI 336 +G+A K A++ NRR+++ Sbjct: 191 AGYAEFSPKATNATESGREQNRRVEL 216 >gi|88859188|ref|ZP_01133829.1| flagellar motor protein [Pseudoalteromonas tunicata D2] gi|88819414|gb|EAR29228.1| flagellar motor protein [Pseudoalteromonas tunicata D2] Length = 290 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 11/154 (7%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++++ +L KKI+ L + D ++ E+ I+I I R F S+ P+ Sbjct: 129 QEQVNELVKKIAQQLEEQIQDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPQF 182 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSE 306 ++QKI ++L I++ GHTD N + +NW LS R+ + + K SG + Sbjct: 183 KPIIQKIADLLKDVPGEITVSGHTDDYQVSNELYFNNWDLSAKRSVAVASEMQKVSGFDK 242 Query: 307 DRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 +R+ I G A R + ++ S NRR++I + Sbjct: 243 NRMVVI-GHADTRPLVPNEDSESRKRNRRVEISI 275 >gi|300023960|ref|YP_003756571.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525781|gb|ADJ24250.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 342 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 12/117 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEV-------ISIRGHTDASPFRNIAR-DNWR 286 +F S+ PE + + +I E +L E+ + I GHTDA P N NW Sbjct: 227 LFSSGSASLTPEGMAAMDQIAEAILELQKEIPGDIDWALQINGHTDARPISNPQYPSNWE 286 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 LS RA S + L+ GV DR+ +G+ + AS+ + NRRI++ + R Sbjct: 287 LSTARAASVVKYLVLRGVPADRLV-AAGYGEFQPVDASNTEEAYQRNRRIELKLTSR 342 >gi|260427879|ref|ZP_05781858.1| OmpA/MotB domain protein [Citreicella sp. SE45] gi|260422371|gb|EEX15622.1| OmpA/MotB domain protein [Citreicella sp. SE45] Length = 627 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 +I + GHTD P R AR DNW LS RA S + L+ G+ DR+S +GF ++ Sbjct: 547 IIRVDGHTDDIPLRPGARFSDNWELSQARALSVVRYLVDFLGIPPDRLSA-NGFGQYQ-- 603 Query: 322 IASDPMNSA-----NRRIDILVEDR 341 DP ++A NRRI++ + +R Sbjct: 604 -PIDPSDTADARAQNRRIELKLTER 627 >gi|118479664|ref|YP_896815.1| flagellar motor protein MotB [Bacillus thuringiensis str. Al Hakam] gi|196044798|ref|ZP_03112032.1| chemotaxis protein MotB [Bacillus cereus 03BB108] gi|118418889|gb|ABK87308.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam] gi|196024286|gb|EDX62959.1| chemotaxis protein MotB [Bacillus cereus 03BB108] Length = 262 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|213963452|ref|ZP_03391706.1| OmpA family protein [Capnocytophaga sputigena Capno] gi|213953860|gb|EEB65188.1| OmpA family protein [Capnocytophaga sputigena Capno] Length = 454 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 9/107 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD + + PE+ VL I VL + SI G+TD S N A+ N +LS DRA Sbjct: 349 TILFDVNKATIRPESATVLNNIVNVLNKYKNAKFSIEGYTDTS--GNKAK-NQKLSEDRA 405 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 YS L+ G+ + R++ GF + IAS+ NRR++I Sbjct: 406 YSVKAYLIDKGIDQARLT-AKGFGPEK-PIASNKTKKGRELNRRVEI 450 >gi|86147426|ref|ZP_01065738.1| flagellar motor protein [Vibrio sp. MED222] gi|85834719|gb|EAQ52865.1| flagellar motor protein [Vibrio sp. MED222] Length = 315 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F S+ P+ +++++ E++ ++ I GHTD + R NW Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334 LS RA S Q + K+ GF+H RL++ ++P+ S NRR+ Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295 Query: 335 DI 336 +I Sbjct: 296 EI 297 >gi|83311658|ref|YP_421922.1| flagellar motor protein [Magnetospirillum magneticum AMB-1] gi|82946499|dbj|BAE51363.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1] Length = 220 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K LQDL ++ ++G ++ V GI++++ + MF S+ PE Sbjct: 63 KTPLQDLRSEVLGQVAGAGVEDTVD---VGRDDKGIVLNLA---SGTMFKPGSAEVRPEI 116 Query: 249 IVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304 + ++++I L + I I+GHTD +P R NW LS RA S +V+ + G+ Sbjct: 117 LPLMKEISGTLKQERFLNYQIDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGI 176 Query: 305 SEDRISKISGFAHHRLKIA--SD-----PMNSA-NRRIDILVEDR 341 R+ K++ A ++ SD P N A NRR++I + R Sbjct: 177 PTSRM-KLAALADTAPRVPNRSDTGKAYPENQAINRRVEIHIYPR 220 >gi|294085848|ref|YP_003552608.1| flagellar motor protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665423|gb|ADE40524.1| flagellar motor protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 389 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 265 VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322 V+ + GHTD P R DNW LS +RA S + L+ G+ +R++ +G+ H+ I Sbjct: 307 VLQVDGHTDDIPIRAGRYADNWDLSTERALSVVRFLISQGLPPNRLAA-TGYGEHQPLIN 365 Query: 323 -ASDPMNSANRRIDILVEDR 341 S+ NRRI++ + R Sbjct: 366 ENSEDARQKNRRIELKITQR 385 >gi|298486507|ref|ZP_07004567.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158984|gb|EFI00045.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 19/175 (10%) Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M ++RLQ AK S+ G + D I+ ET R G+++++ D Sbjct: 98 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 154 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N +LS DR Sbjct: 155 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 209 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G++ + AS+ + NRR++I+ D +G Sbjct: 210 AQAVADVLMDLGVDEKRI-HVEGYSQQ-FPVNANASERGRAQNRRVEIVFSDEKG 262 >gi|218710365|ref|YP_002417986.1| flagellar motor protein MotB [Vibrio splendidus LGP32] gi|218323384|emb|CAV19561.1| Flagellar motor protein [Vibrio splendidus LGP32] Length = 315 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F S+ P+ +++++ E++ ++ I GHTD + R NW Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334 LS RA S Q + K+ GF+H RL++ ++P+ S NRR+ Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295 Query: 335 DI 336 +I Sbjct: 296 EI 297 >gi|315649793|ref|ZP_07902876.1| OmpA/MotB domain protein [Paenibacillus vortex V453] gi|315274767|gb|EFU38148.1| OmpA/MotB domain protein [Paenibacillus vortex V453] Length = 270 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 26/202 (12%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T D+E K+ T + + +KEE+ PL++ ++ +++ L + I V Sbjct: 78 TADTENHKNPPPQTAVTE--DKEEDNGEAPLTERELAFRAQEEELANFMGLIQQ----YV 131 Query: 208 ADNIVKGVLFETTRT-GILISIIDQRNTPMFD------KSSSIPLPETIVVLQKIGEVLA 260 DN ++ +F + GI I++ D+ +FD KS + P VL K+ + Sbjct: 132 KDNQLEEDIFISDEPQGIAITLSDRF---LFDVGKAELKSGAAP------VLGKLASLFG 182 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +SI GHTD P + +DNW LS RA S + ++ + + +G+A Sbjct: 183 DLNTTVSIEGHTDNVPIGRHSSYKDNWELSGARAMSVLRFFLEDSKLDPAGFQYAGYADT 242 Query: 319 RLKI--ASDPMNSANRRIDILV 338 R A+ NRR++I V Sbjct: 243 RPAADNATPEGKQKNRRVEITV 264 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 9/71 (12%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF---GKNLMTASKGIF----- 84 W I YAD +T+L+ FF+VM+ ++ D + K + Q G +++ GI Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQATFQSGDSILEMGSGITGTADT 81 Query: 85 -DEQNPPERSS 94 + +NPP +++ Sbjct: 82 ENHKNPPPQTA 92 >gi|157889011|dbj|BAF80958.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G+VL + + +I GHTD++ + N +LSL+RA + + L KSGV Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKSGV 289 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335 ++++I+ G+ + K ++D + NRR++ Sbjct: 290 AKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|158422120|ref|YP_001523412.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] gi|158329009|dbj|BAF86494.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] Length = 339 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--------IRGHTDASPFRNIA-RDNWR 286 FD+ S+ P PE + L K+ + I I GHTD+ P NW Sbjct: 224 FFDRGSATPRPEALAELDKLASAILELERQIPPDINWALRIDGHTDSRPISTPQFPSNWE 283 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDR 341 LS RA + Q L+ GV + R +GF ++ SD + NRRI++ + +R Sbjct: 284 LSAARAIAVAQYLISKGV-QPRHLIAAGFGEYQPIDTGTSDESMARNRRIELKLTER 339 >gi|315127296|ref|YP_004069299.1| chemotaxis protein [Pseudoalteromonas sp. SM9913] gi|315015810|gb|ADT69148.1| putative chemotaxis protein [Pseudoalteromonas sp. SM9913] Length = 320 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWR 286 +I+ + +F S++ + +++KI ++A I +RG+TD RN I R NW Sbjct: 153 VIELNSGLLFASGSAVAHNKAKEIVKKIEAIIASVDNYIRVRGYTDNETIRNEIFRSNWE 212 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 LS+ RA S L + G+ R++ I G+ + Sbjct: 213 LSVARATSILVELERLGIESARMA-IEGYGQY 243 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKK----AIEQYFNPFGKNLMTASKGI 83 W + YAD+MT++ AFF+V++ I +D K ++E F+ K G+ Sbjct: 19 WLVSYADYMTIMFAFFVVLYAIAINKEDNIKVLSDSLEHVFDKSAKQYSQQGNGV 73 >gi|224372468|ref|YP_002606840.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH] gi|223589113|gb|ACM92849.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH] Length = 373 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 27/167 (16%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP------------- 235 K + D K +TL+G+ D V G + + G+ + NTP Sbjct: 207 KDGVYDSLDKCPNTLAGVSVD--VNGCPLDDDQDGVPNYLDKCSNTPKGVVVDEHGCAMT 264 Query: 236 -----MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 FD S+ P+ + +++ E L + I+G+TD+ + A N +LS Sbjct: 265 YDFGITFDNDSADIKPQFMKKIEEFAEFLKQNPAYKAEIQGYTDS---KGSAEYNQKLSE 321 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRI 334 RA + Y+VL+K G+S+DR+S G+ ++D P A NRR+ Sbjct: 322 RRAKAVYEVLIKQGISKDRLS-YKGYGEANPVASNDTPDGKAQNRRV 367 >gi|228987761|ref|ZP_04147872.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772035|gb|EEM20490.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 234 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN-- 328 P N NW LS RA + QVL+++ E + K S G+ +R +D Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQN--KELQPGKFSAVGYGEYRAIAPNDTQEGK 216 Query: 329 SANRRIDILV 338 + NRR+++ + Sbjct: 217 AKNRRVEVFI 226 >gi|209886430|ref|YP_002290287.1| flagellar motor protein [Oligotropha carboxidovorans OM5] gi|209874626|gb|ACI94422.1| flagellar motor protein [Oligotropha carboxidovorans OM5] Length = 337 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 236 MFDKSSSIPLPE----------TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 FD SS LPE I L+K ++ A V+ + GHTD P + + N Sbjct: 222 FFDSGSSGLLPEGRGELDQLATAITELEK--KIPAEIPWVLRVDGHTDVRPINSPQFKSN 279 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA-SDPMNSANRRIDILVEDR 341 W LS RA S Q L+ GVS R+ +GF + L A +D NRRI++ + +R Sbjct: 280 WDLSAARAISVVQYLISRGVSPQRLVA-AGFGEFQPLDTATTDDAYKRNRRIELKLTER 337 >gi|289624411|ref|ZP_06457365.1| ompA family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646675|ref|ZP_06478018.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867435|gb|EGH02144.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987431|gb|EGH85534.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 271 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 19/175 (10%) Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M ++RLQ AK S+ G + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N +LS DR Sbjct: 158 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ + AS+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQQ-FPVNANASERGRAQNRRVEIVFSDEKG 265 >gi|244538688|dbj|BAH82838.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G+VL + + +I GHTD++ + N +LSL+RA + + L KSGV Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKSGV 289 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335 ++++I+ G+ + K ++D + NRR++ Sbjct: 290 AKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|229158119|ref|ZP_04286188.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] gi|228625348|gb|EEK82106.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] Length = 234 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 102 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTD 158 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN-- 328 P N NW LS RA + QVL+++ E + K S G+ +R +D Sbjct: 159 NVPIANAQFASNWELSTQRAVNFMQVLLQN--KELQPGKFSAVGYGEYRAIAPNDTQEGK 216 Query: 329 SANRRIDILV 338 + NRR+++ + Sbjct: 217 AKNRRVEVFI 226 >gi|87119461|ref|ZP_01075358.1| flagellar motor protein [Marinomonas sp. MED121] gi|86164937|gb|EAQ66205.1| flagellar motor protein [Marinomonas sp. MED121] Length = 281 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 E + VL I EVL + I + GHTD P N NW+LS RA S L+ G++ Sbjct: 174 EAVAVLMSISEVLKRYSYPIVVEGHTDNLPVSSNKYTSNWQLSSARASSVVDELVNGGIN 233 Query: 306 EDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 I+ + G + + K+ ++D + NRR+ + Sbjct: 234 PQLIA-VLGLSSEKPKVRNSNDFSRARNRRVTL 265 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 19/102 (18%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMW-----------IINATDDDTKKAIEQYFNPF 72 +DT N W + YADF+T+L AFF+ ++ ++ T + +A++ P Sbjct: 21 NDTNQNKQRWILSYADFITLLFAFFVALYSISLKNQGDSKLLTETLEGVMQAVQLSVQPI 80 Query: 73 GKNLMTASKG---IFDEQNP-----PERSSQNKIDLSIDEHI 106 +T K F E P P S Q I +D+ + Sbjct: 81 NIGKVTTGKAEDEAFQELTPDRGSDPSPSPQQNIQTVVDKKL 122 >gi|84394351|ref|ZP_00993072.1| flagellar motor protein [Vibrio splendidus 12B01] gi|84375010|gb|EAP91936.1| flagellar motor protein [Vibrio splendidus 12B01] Length = 315 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F S+ P+ +++++ E++ ++ I GHTD + R NW Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334 LS RA S Q + K+ GF+H RL++ ++P+ S NRR+ Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295 Query: 335 DI 336 +I Sbjct: 296 EI 297 >gi|167034765|ref|YP_001669996.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861253|gb|ABY99660.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 270 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 11/151 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQK 254 AK S G ++ + + E T G+++++ D +FD S+ + + VL+ Sbjct: 122 AKLASVQQQGKWVESQIAALASEQTDRGLVMTLGD----VLFDTGSADLKNSASRTVLKL 177 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + + + V+ I G+TD++ +A DN +LS DRA S +L+ G+ E R+ ++ G Sbjct: 178 VQFLQLNPRRVVRIEGYTDST---GLAEDNLKLSRDRAQSVADMLVDLGIDEKRL-QVEG 233 Query: 315 FA-HHRLKI-ASDPMNSANRRIDILVEDRQG 343 + + ++ AS+ + NRR++I+ D +G Sbjct: 234 YGDQYPIEANASERGRAQNRRVEIVFSDDKG 264 >gi|257485486|ref|ZP_05639527.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010666|gb|EGH90722.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 271 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 19/175 (10%) Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M ++RLQ AK S+ G + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N +LS DR Sbjct: 158 --VLFDAGRAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ + AS+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQQ-FPVNANASERGRAQNRRVEIVFSDEKG 265 >gi|242277509|ref|YP_002989638.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242120403|gb|ACS78099.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 241 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL KI LA S + + GH+D P R+ NW LS RA + + L+ +G S+DRI Sbjct: 140 VLGKIAPTLAKSPYQVVVEGHSDNIPIRSKQFPSNWELSSARASAVARYLLDNGFSKDRI 199 Query: 310 SKISGFAHHRLKIASD-------PMNSA-NRRIDILV 338 K+ G A ++ P N NRR+ +LV Sbjct: 200 -KVLGMADTAPAYPNEDDNGNAIPANQKRNRRVVLLV 235 >gi|120599624|ref|YP_964198.1| flagellar motor protein MotB [Shewanella sp. W3-18-1] gi|146292382|ref|YP_001182806.1| flagellar motor protein MotB [Shewanella putrefaciens CN-32] gi|120559717|gb|ABM25644.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] gi|145564072|gb|ABP75007.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] gi|319425682|gb|ADV53756.1| stator-force generator of Na+ coupled flagellar motor, PomB [Shewanella putrefaciens 200] Length = 308 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 11/147 (7%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KK++ L+ + D ++ E+ I+I I R F S P V++ +G Sbjct: 153 KKMAQELNKEIIDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPVVRSVG 206 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISG 314 E+L VI++ G+TD + + NW LS RA + A++++ G R+ K+ G Sbjct: 207 ELLKDVPGVITVAGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM-KVVG 265 Query: 315 FAHHRLKIASD-PMNSA-NRRIDILVE 339 A + + +D P N A NRR++I +E Sbjct: 266 MASNNPIVPNDSPENRARNRRVEIAIE 292 >gi|172058884|ref|YP_001815344.1| OmpA/MotB domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991405|gb|ACB62327.1| OmpA/MotB domain protein [Exiguobacterium sibiricum 255-15] Length = 257 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 K + E T G++ +I R+ +F + + + I + Q + +L + + I + GH Sbjct: 112 KDIKVEVTNEGLVFNI---RDRALFSPAQADVKGDAIQIAQGMSNLLVKAGQRQIQVSGH 168 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TD P + NW LS +RA S + L ++ + +SG+ ++ IAS+ S Sbjct: 169 TDNIPINTVQYPSNWELSAERAISFMRALQRNPKLTPKRFTVSGYGEYQ-PIASNDTESG 227 Query: 331 ---NRRIDILV 338 NRR+++L+ Sbjct: 228 RSQNRRVEVLI 238 >gi|327188824|gb|EGE56018.1| putative outer membrane protein (OmpA protein) [Rhizobium etli CNPAF512] Length = 343 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + Sbjct: 264 VLRVDGHTDNVPLAGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 322 Query: 323 ASDP--MNSANRRIDI 336 D + NRRI++ Sbjct: 323 PGDAPDARATNRRIEL 338 >gi|148976605|ref|ZP_01813292.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3] gi|145963956|gb|EDK29214.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3] Length = 315 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 23/122 (18%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 +I R F S+ P+ +++++ E++ ++ I GHTD + R NW Sbjct: 186 VIRIREKGAFPSGSAFLQPKFRPLVRQVAELVKDVPGIVRISGHTDNQRLDSELYRSNWD 245 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRI 334 LS RA S Q + K+ GF+H RL++ ++P+ S NRR+ Sbjct: 246 LSSQRAVSVAQ----------EMEKVRGFSHQRLRVRGMADTEPVEPNDTEWQRSLNRRV 295 Query: 335 DI 336 +I Sbjct: 296 EI 297 >gi|242309734|ref|ZP_04808889.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489] gi|239523735|gb|EEQ63601.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489] Length = 258 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDK-SSSIPLPETIVVLQKIGEVLAHSTEVISIR--GH 271 V FE GI+I I + +F+ S+++ I L++I L H + I I+ GH Sbjct: 112 VEFEEAEKGIIIRIPEDL---LFESGSATLSNSNGITFLKRISLELNHLPKEILIKAIGH 168 Query: 272 TDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---P 326 TD +P + A DN LS+ R + +L+ G+ ++RI I G IA++ Sbjct: 169 TDNTPMKKNATFADNLELSIARGVNVANLLISQGIDKERI--IGGGEGEFSPIANNDIPE 226 Query: 327 MNSANRRIDILV 338 + + NRR+D+ V Sbjct: 227 LRAKNRRVDLYV 238 >gi|71735961|ref|YP_274192.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556514|gb|AAZ35725.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 271 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 19/175 (10%) Query: 178 LSKEKILAMK-RKKRLQ---DLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M ++RLQ AK S+ G + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N +LS DR Sbjct: 158 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ + AS+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQQ-FPVNANASERGRAQNRRVEIVFSDEKG 265 >gi|206603127|gb|EDZ39607.1| Putative flagellar motor protein (OmpA/MotB) [Leptospirillum sp. Group II '5-way CG'] Length = 261 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 + + VL+KI +LA + I + G+TD P R +R NW LS RA + L++ G Sbjct: 133 KAVPVLRKIAALLARTNHEIRVHGYTDNQPIRT-SRYPSNWALSTMRAVNVLTRLLEYGS 191 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQ 342 + +GF R IAS+ NRR++IL+ +R+ Sbjct: 192 IDPGRMGAAGFGKFR-PIASNLTPEGREKNRRVEILIMNRE 231 >gi|152980650|ref|YP_001353771.1| flagellar motor protein MotD [Janthinobacterium sp. Marseille] gi|151280727|gb|ABR89137.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille] Length = 259 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 12/156 (7%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + K R+ +A+ I ++ LV+ V+ + +T R G+ + I + +F + Sbjct: 95 REKARMTSIARDILKAMAPLVSQGKVR--VTQTNR-GVSVEI---NASVLFAPGEAKLNA 148 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L+ + +VL I + GHTD +P N + NW LS RA S ++ + +GV+ Sbjct: 149 QSEAALRAVAQVLKDVDNDIQVEGHTDNTPINNTMFPSNWELSAVRASSVVRLFLANGVA 208 Query: 306 EDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 E R+ + A+ L + S+ NRR+ +++ Sbjct: 209 EKRLVAMGHGAN--LPVDSNDTTEGRLRNRRVQLMI 242 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 13/27 (48%), Positives = 22/27 (81%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59 W + YADF+T+L AFF+VM+ I++ ++ Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNE 42 >gi|114320554|ref|YP_742237.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226948|gb|ABI56747.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 266 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L + VLA I + GHTD P R NW LS RA +L+++ E Sbjct: 141 LPILHTVAGVLAGQGGTIRVSGHTDDVPIDTERFRSNWELSTARATEVVHLLLEAAPIEP 200 Query: 308 RISKISGFAHHR-LKIASDPMNSA-NRRIDILV 338 G A R L+ + P N A NRR+D+L+ Sbjct: 201 GRFIAQGHADTRPLRPNTSPENRARNRRVDVLI 233 >gi|330830900|ref|YP_004393852.1| sodium-driven polar flagellar protein [Aeromonas veronii B565] gi|328806036|gb|AEB51235.1| Sodium-driven polar flagellar protein [Aeromonas veronii B565] Length = 283 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 76/318 (23%), Positives = 125/318 (39%), Gaps = 71/318 (22%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFDEQNP 89 +AD M++LM FF+++ D K I + FG +N++ KG + ++ Sbjct: 4 FADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMDKAFGVQNILEVKDIPKGTSVIAQEFR 63 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 P R ID + + I +L+ F S Q+ + Sbjct: 64 PGRPEPTPIDTVMQQTIDLTQTELE-----------------FLPGESDQAGG------Q 100 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 D GK T + +E++ L K LA + K ++QD A +I Sbjct: 101 DKSDGKQTGGDTAQDAKKAQEQSNTL-----AKALAEQMKDQIQDGAIEI---------- 145 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 E I+I I R F S+ P+ V++K+ +L I+I Sbjct: 146 --------EALGQQIIIRI---REKASFPAGSAFLQPQFWPVIRKVATLLKDVPGEITIS 194 Query: 270 GHTDASPFRNIA------RDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKI 322 GHTD N+A + NW LS RA + A+Q+L G + R+ + G A + + Sbjct: 195 GHTD-----NVATEDELFQSNWELSSQRAVAVAHQMLKVPGFDQGRLV-VQGMADSQPLV 248 Query: 323 A-SDPMN-SANRRIDILV 338 + P N NRR++I + Sbjct: 249 PNTTPENRRMNRRVEIAI 266 >gi|218662295|ref|ZP_03518225.1| hypothetical protein RetlI_23953 [Rhizobium etli IE4771] Length = 223 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + Sbjct: 144 VLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 202 Query: 323 ASD--PMNSANRRIDI 336 D + NRRI++ Sbjct: 203 PGDTPEARATNRRIEL 218 >gi|331007308|ref|ZP_08330507.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] gi|330418870|gb|EGG93337.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] Length = 434 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 265 VISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +ISI GHTD P + + NW LS RA A + LM+ G+ + + GFA+ R Sbjct: 333 LISIEGHTDHRPIVSTLAEKYPTNWELSAARASFAIRHLMEKGLPAKQFQAV-GFANTR- 390 Query: 321 KIASD---PMNSANRRIDILV 338 IA D NRRI+IL+ Sbjct: 391 PIAMDVDYASQKKNRRIEILL 411 >gi|15966529|ref|NP_386882.1| hypothetical protein SMc03992 [Sinorhizobium meliloti 1021] gi|15075800|emb|CAC47355.1| Hypothetical protein signal peptide [Sinorhizobium meliloti 1021] Length = 344 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+ A V+ + GHTD I R DNW LS RA S + L+ GV DR+ +G Sbjct: 257 EIPAEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AG 315 Query: 315 FAHHRLKIA---SDPMNSANRRIDI 336 F ++ IA S + NRRI++ Sbjct: 316 FGEYQ-PIAPGESQEARAQNRRIEL 339 >gi|307300434|ref|ZP_07580214.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] gi|307318299|ref|ZP_07597734.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306895981|gb|EFN26732.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306904600|gb|EFN35184.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] Length = 342 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+ A V+ + GHTD I R DNW LS RA S + L+ GV DR+ +G Sbjct: 255 EIPAEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AG 313 Query: 315 FAHHRLKIA---SDPMNSANRRIDI 336 F ++ IA S + NRRI++ Sbjct: 314 FGEYQ-PIAPGESQEARAQNRRIEL 337 >gi|254706491|ref|ZP_05168319.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] Length = 47 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 26/38 (68%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLV 50 + II+++ D ++ G WKI YADFMT +MAFFLV Sbjct: 10 EIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLV 47 >gi|330899174|gb|EGH30593.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 271 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 17/174 (9%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R DN +LS DR Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ A S+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265 >gi|253681414|ref|ZP_04862211.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873] gi|253561126|gb|EES90578.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873] Length = 242 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWR 286 II+ ++ +FD + + + +L KI +L I I GHTD P N NW Sbjct: 121 IIELKDNILFDSAQAEIKTPSKEILDKISNLLESVPNGIIIEGHTDNVPIHNAKYASNWE 180 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 LS RA + + +++ G++ D+ H ++ + N A NRR++IL+ Sbjct: 181 LSTQRAVNVLKYFVENKGLAPDKFQAAGYGEFHPIEKNDNYANKAKNRRVNILI 234 >gi|149909329|ref|ZP_01897985.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36] gi|149807646|gb|EDM67594.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36] Length = 290 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 124/310 (40%), Gaps = 52/310 (16%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG-------KNLMTASKGIFDEQN 88 +AD M++LM FF+++ + D K I + FG KN+ + I E Sbjct: 4 FADLMSLLMCFFVLLLSFSEMDVVKFKQIAGSMQHAFGVQNQIEVKNIPKGTTVIAQEFR 63 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P R I+ +I +H NS E + + Q+ KN L Sbjct: 64 PG-RPDPTPIE-TIMQHTIDNS-----------------EAELDFKDGEDQNAGGKNKLA 104 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 DS GK ST + +N + + E + A+ + L ++I S G+ Sbjct: 105 EDSNGGKSPETST---RDNTPTQNIEVTEDTSELVKALA-----EALKEEIDS--GGVEV 154 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 +N+ + ++ G F S+ P V+QK+ ++LA +I+I Sbjct: 155 ENLGQQIIIRINEKG------------SFPSGSAFLQPRFRPVIQKVAQLLATIPGIITI 202 Query: 269 RGHTDASPFRN-IARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 GHT + + R W LS RA S A+++L +E+R+ + G A + + Sbjct: 203 AGHTGKEQLHSELYRSKWDLSSQRAVSVAHEMLKVKEFTENRLI-VQGMADTQPLTDDEN 261 Query: 327 MNSANRRIDI 336 NRR++I Sbjct: 262 ELRRNRRVEI 271 >gi|330946399|gb|EGH47480.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 213 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 17/174 (9%) Query: 178 LSKEKILAMKRKKRLQDLA----KKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA K S+ G + D I+ ET R G+++++ D Sbjct: 43 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 99 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R DN +LS DR Sbjct: 100 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 154 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ A S+ + NRR++I+ D +G Sbjct: 155 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 207 >gi|331269325|ref|YP_004395817.1| chemotaxis motB protein [Clostridium botulinum BKT015925] gi|329125875|gb|AEB75820.1| chemotaxis motB protein [Clostridium botulinum BKT015925] Length = 242 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWR 286 II+ ++ +FD + + + +L KI +L I I GHTD P N + NW Sbjct: 121 IIELKDNILFDSAQAEIKAPSKEILDKISRLLESVPNGIIIEGHTDNVPIHNTKYESNWE 180 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 LS RA + + ++S G++ D+ H ++ + + A NRR++IL+ Sbjct: 181 LSTQRAVNVLKYFVESKGLAPDKFQAAGYGEFHPIEKNDNYADRAKNRRVNILI 234 >gi|83949920|ref|ZP_00958653.1| flagellar motor protein [Roseovarius nubinhibens ISM] gi|83837819|gb|EAP77115.1| flagellar motor protein [Roseovarius nubinhibens ISM] Length = 627 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 VI + GHTD P N A DNW LS RA S + +++S G+ DR+S +GF ++ Sbjct: 547 VIRVDGHTDDVPIVNSAEFADNWELSQARALSVVRYMIESLGIPPDRLSA-NGFGQYQPV 605 Query: 322 IASDPMN--SANRRIDI 336 D + NRRI++ Sbjct: 606 AQGDSAEARAQNRRIEL 622 >gi|114764496|ref|ZP_01443721.1| flagellar motor protein [Pelagibaca bermudensis HTCC2601] gi|114543063|gb|EAU46082.1| flagellar motor protein [Roseovarius sp. HTCC2601] Length = 634 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 12/85 (14%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 ++ + GHTD +P R AR DNW LS RA S + L++ G+ R+S +GF ++ Sbjct: 554 ILRVDGHTDDTPLRPGARFADNWELSQARALSVVRFLVEDMGIPPQRLSA-NGFGEYQ-- 610 Query: 322 IASDPMNS-----ANRRIDILVEDR 341 DP +S NRRI++ + +R Sbjct: 611 -PVDPADSPEARAQNRRIELKLTER 634 >gi|330980720|gb|EGH78823.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 271 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 17/174 (9%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R DN +LS DR Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ A S+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265 >gi|289679931|ref|ZP_06500821.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5] Length = 190 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ ET R G+++++ D Sbjct: 20 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 76 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R DN +LS DR Sbjct: 77 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---DNLKLSKDR 131 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDILVEDRQG 343 A + VLM GV E RI + G+ P+N + NRR++I+ D +G Sbjct: 132 AQAVADVLMDLGVDEKRI-HVEGYGQEF------PVNANTFERGRAQNRRVEIVFSDEKG 184 >gi|296536082|ref|ZP_06898216.1| OmpA family protein [Roseomonas cervicalis ATCC 49957] gi|296263579|gb|EFH10070.1| OmpA family protein [Roseomonas cervicalis ATCC 49957] Length = 235 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 ++ + GH D SP R AR NW LS RA + Q L+ G+ +R++ + + + Sbjct: 156 ILRVDGHADRSPLRAGARYASNWELSAARAIAVGQFLIGEGLPPNRVAATAFGEYQPIDS 215 Query: 323 ASDPMNSA-NRRIDILVEDR 341 P A NRRI++ + DR Sbjct: 216 GDSPEAFARNRRIELRLTDR 235 >gi|52140989|ref|YP_085838.1| flagellar motor protein MotB [Bacillus cereus E33L] gi|51974458|gb|AAU16008.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus E33L] Length = 262 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--S 329 P N NW LS RA + QVL+++ + ++ S I G+ +R +D + Sbjct: 187 NVPIANSQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKA 245 Query: 330 ANRRIDILV 338 NRR+++ + Sbjct: 246 KNRRVEVFI 254 >gi|225849164|ref|YP_002729328.1| chemotaxis protein MotB [Sulfurihydrogenibium azorense Az-Fu1] gi|225643203|gb|ACN98253.1| chemotaxis protein MotB (Motility protein B) [Sulfurihydrogenibium azorense Az-Fu1] Length = 265 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 10/154 (6%) Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K++ +D KKI + +V N+ V E G+ I I+D +F+ S E Sbjct: 76 KQKREDTKKKIKERVEQIVKKLNLEGKVQVEVIPMGVRIRILDYI---LFNPCSVEIKKE 132 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVS 305 +L + EV+ + + + GHTD P I NW LS RA S + L++S Sbjct: 133 YQELLSSVAEVIKEANLPVEVEGHTDNIPPSGNCIYPSNWELSAARAASVVRFLIQSKNL 192 Query: 306 EDRISKISGFAHHRLKIA---SDPMNSANRRIDI 336 + G+A R IA S+ S NRRI+I Sbjct: 193 PPAMFTAVGYADTR-PIAPNTSEIGRSMNRRIEI 225 >gi|226939690|ref|YP_002794763.1| OmpA/MotB [Laribacter hongkongensis HLHK9] gi|226714616|gb|ACO73754.1| OmpA/MotB [Laribacter hongkongensis HLHK9] Length = 225 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S++ P + K+ E L ++ + IRG+TD++ A N +LSL RA + Sbjct: 118 FNLNSAVVKPAFYPTMNKVAETLKQYNQTTLVIRGYTDST---GAAAYNQQLSLKRANAV 174 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 L+ GV+ +RI I G + ++D + NRR+ I + +QG Sbjct: 175 KSYLVGQGVAANRIQTI-GMGESDPRASNDTAQGRAMNRRVSITIVPQQG 223 >gi|126664984|ref|ZP_01735967.1| flagellar motor protein MotD [Marinobacter sp. ELB17] gi|126630354|gb|EBA00969.1| flagellar motor protein MotD [Marinobacter sp. ELB17] Length = 261 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 PLS R + LQ+LA ++ S L+ ++ + +++ N+ + Sbjct: 93 PLSLPAPDNASRSRALQELAGQLGQEFSALIEGGVIS---LNADDEWLQLNL---PNSLL 146 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYS 294 F + P ++ V++KI VL + I I G TD R+ R NW LS RA Sbjct: 147 FGSGDAEPHYDSFAVMEKIAGVLRDTDNAIRIEGFTDNQSIRS-GRFPSNWELSAARASV 205 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 ++L+ G+ R++ + G+ H+ Sbjct: 206 LVRMLVMDGIDPARLAAV-GYGEHQ 229 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YADF+T+L AFF+VM+ +++ ++ K + N +T G+F N PER Sbjct: 17 WLISYADFITLLFAFFVVMYSVSSVNEGKYKVL--------SNTLT---GVF---NAPER 62 Query: 93 S 93 S Sbjct: 63 S 63 >gi|190893330|ref|YP_001979872.1| outer membrane protein (OmpA protein) [Rhizobium etli CIAT 652] gi|190698609|gb|ACE92694.1| probable outer membrane protein (OmpA protein) [Rhizobium etli CIAT 652] Length = 343 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + Sbjct: 264 VLRVDGHTDNVPLVGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 322 Query: 323 ASDP--MNSANRRIDI 336 D + NRRI++ Sbjct: 323 PGDAPDARATNRRIEL 338 >gi|120555939|ref|YP_960290.1| hypothetical protein Maqu_3029 [Marinobacter aquaeolei VT8] gi|120325788|gb|ABM20103.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 217 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 209 DNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 D + KG V F R GI +++ + N+ L I LQ L E++ Sbjct: 70 DPLTKGLVTFRDGRIGISGNVLFELNSDQLQAEGEEVLESLIRPLQA---YLEQHDELLM 126 Query: 268 IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + G TD P N +DNW LS RA + + L + G+ DR+ + HH D Sbjct: 127 VSGFTDDLPMHPGNRYQDNWGLSAQRALTVTRTLTELGLPNDRVFAAAFGPHHPAVPNVD 186 Query: 326 PMNSA-NRRIDI 336 + A NRR++I Sbjct: 187 AESRAQNRRVEI 198 >gi|34558375|ref|NP_908190.1| putative flagellar motor protein [Wolinella succinogenes DSM 1740] gi|34484094|emb|CAE11090.1| HYPOTHETICAL PROTEIN-PUTATIVE FLAGELLAR MOTOR PROTEIN [Wolinella succinogenes] Length = 261 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + +RGHTD P A +D L+ RA S ++L+K G+ RI+ + L A Sbjct: 165 VEVRGHTDTLPLPAQAPQDKLELTAKRALSVSKLLVKEGIDPKRITTVGRGDQDPLTHAR 224 Query: 325 DP-MNSANRRIDI 336 P +NRR+DI Sbjct: 225 TPEAQESNRRVDI 237 >gi|322383007|ref|ZP_08056837.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153030|gb|EFX45490.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 254 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%) Query: 186 MKRK-KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSI 243 M+RK K LQD+ K T+ + +N ++ + + G+ +++ D +FD + Sbjct: 99 MERKEKELQDILK----TVQAYIEENHLEAQIAVGNSERGVSVTLKDLF---LFDLGKAE 151 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 PE VL K+ + ISI GHTD P R + +DNW LS R+ S + Sbjct: 152 LKPEAYPVLNKLASLFPTLDTKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTT 211 Query: 302 SGVSEDRISKI--SGFAHHRLKIASDPMN--SANRRIDILV 338 + SK +G+A +D M + NRR++I++ Sbjct: 212 KADPKISDSKFMSTGYADTIPVAPNDSMENRAKNRRVEIVI 252 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK---NLMTASKGIFDEQNP 89 W + YAD +T+L+AFF++M+ ++ D + + + Q + K ++++ + G+ + P Sbjct: 17 WLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKESNSILSMNSGVSGQNMP 76 Query: 90 PERS 93 P+ + Sbjct: 77 PKST 80 >gi|325281257|ref|YP_004253799.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313066|gb|ADY33619.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712] Length = 276 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETI 249 RLQ L + L G +D L T + G I +++ D+ +F+ S+ + Sbjct: 120 RLQSLLNSVKDALLGFSSDE-----LTVTEKNGKIYVAMSDK---LLFESGSAQVNKQGK 171 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD P + + +DNW LS+ RA S ++L K Sbjct: 172 EALGKLAEVLKKQHDIDVFIEGHTDNKPIKTVQFKDNWDLSVVRATSVVRILTK 225 >gi|325525466|gb|EGD03280.1| flagellar motor protein MotB [Burkholderia sp. TJI49] Length = 109 Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 37/59 (62%) Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS DRA ++ + L+ G+ E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 1 NWELSADRANASRRELIAGGMDEAKVMRVIGLASTQNLNKADPLDPENRRISVIVLNRK 59 >gi|260062810|ref|YP_003195890.1| putative flagellar motor protein MotB [Robiginitalea biformata HTCC2501] gi|88784378|gb|EAR15548.1| putative flagellar motor protein MotB [Robiginitalea biformata HTCC2501] Length = 287 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 35/235 (14%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 +TN + E N F +N+Q+ + +LT + KG + +LEKS+ Sbjct: 53 ATNDARLQTLEEQNAFLKANNQELINNMGNLTTLTAKGAE-----NLEKSLES------- 100 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---------FETTRTGILIS 227 KEK L + ++LQD + S LV +KGVL + + +S Sbjct: 101 --LKEKDLTI---RKLQDAVTRRDSVNLALVQS--LKGVLGNLDDEDIEISVEKGVVFVS 153 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNW 285 I D+ +F S VL K+ +V+ + + + GHTD P+R+ + DNW Sbjct: 154 ISDKL---LFSSGSYNVTNAAKNVLGKVAQVVNNKPDFEFMVEGHTDNVPYRSGVLLDNW 210 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 LS RA S ++L GV R++ + L N A NRR I+V Sbjct: 211 DLSAKRATSVVRILQNDFGVDPARMTAAGRSYYVPLASNDTAANRAKNRRTRIVV 265 >gi|295085810|emb|CBK67333.1| Flagellar motor protein [Bacteroides xylanisolvens XB1A] Length = 256 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ +T K Q L NN + N Q S KN L RD+ K + + ++N E Sbjct: 4 EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 61 Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 L L +K + ++R LQD+ K + + L+++ VK L + + + Sbjct: 62 KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 119 Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281 D + + +F S+ L K+ EVL T++ + I GHTD P + Sbjct: 120 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 179 Query: 282 RDNWRLSLDRAYSAYQVLMKS 302 +DNW LS+ RA S ++L+K+ Sbjct: 180 KDNWDLSVIRATSVVRILIKN 200 >gi|326404482|ref|YP_004284564.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301] gi|325051344|dbj|BAJ81682.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301] Length = 456 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L G + I KG E G + +I NT +F S+ + ++ KIG+ LA Sbjct: 315 LRGFLQPEITKG---EVAVLGTVNAPVIRINNTGLFASGSATVESTALPLISKIGQALAR 371 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + G+TD+ P + +N LS DRA +A VL ++ + RI+ A + Sbjct: 372 EKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGAADPI 431 Query: 321 KIASDPMNSA-NRRIDILV 338 + P A NRRI+I++ Sbjct: 432 ATNATPQGRALNRRIEIVL 450 >gi|256425427|ref|YP_003126080.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256040335|gb|ACU63879.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 285 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF-RNIARD 283 + ID + +F+ S P+ VL K+ +VL + ++ + GHTD++P+ + + D Sbjct: 154 VVYIDISDKMLFESGSYDVTPKAKEVLGKVAKVLLNQPDIEFMVEGHTDSNPYKKGVLLD 213 Query: 284 NWRLSLDRAYSAYQVL 299 NW LS+ RA + +VL Sbjct: 214 NWDLSVKRATAVTRVL 229 >gi|294644876|ref|ZP_06722614.1| OmpA family protein [Bacteroides ovatus SD CC 2a] gi|294808230|ref|ZP_06766993.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b] gi|292639770|gb|EFF58050.1| OmpA family protein [Bacteroides ovatus SD CC 2a] gi|294444557|gb|EFG13261.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b] Length = 256 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ +T K Q L NN + N Q S KN L RD+ K + + ++N E Sbjct: 4 EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 61 Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 L L +K + ++R LQD+ K + + L+++ VK L + + + Sbjct: 62 KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 119 Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281 D + + +F S+ L K+ EVL T++ + I GHTD P + Sbjct: 120 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 179 Query: 282 RDNWRLSLDRAYSAYQVLMKS 302 +DNW LS+ RA S ++L+K+ Sbjct: 180 KDNWDLSVIRATSVVRILIKN 200 >gi|297583574|ref|YP_003699354.1| OmpA/MotB domain-containing protein [Bacillus selenitireducens MLS10] gi|297142031|gb|ADH98788.1| OmpA/MotB domain protein [Bacillus selenitireducens MLS10] Length = 256 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G+++ + +Q +F+ + + LP+ L+K+G ++ ++ + GHTD+ P + Sbjct: 130 GVVLVLQEQA---LFETARAEILPQAEPFLEKVGTLVTTVPNMVKVEGHTDSRPINTVQF 186 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMN-SANRRIDILVE 339 NW LS RA S + ++ + ++R G+ R + + P N NRR+ I++ Sbjct: 187 PSNWELSGARASSVIRFILSNFDVDERRFLAVGYGETRPVAPNTTPDNLQQNRRVVIVIS 246 Query: 340 D 340 D Sbjct: 247 D 247 >gi|126663141|ref|ZP_01734139.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria bacterium BAL38] gi|126624799|gb|EAZ95489.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria bacterium BAL38] Length = 520 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 9/107 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S E+ + L KI EVL ++ + I+I HTD+ + N +LS RA +A Sbjct: 416 FDFNKSTVKKESELSLNKIVEVLTNNANMSITINAHTDS---KGSEAYNQKLSESRAKAA 472 Query: 296 YQVLMKSGVSEDRISKISGFAHHRL----KIASDPMNSANRRIDILV 338 YQ L+K G+ +++ G+ L + + + ANRRI+ + Sbjct: 473 YQYLLKKGIPASQLT-YKGYGESELLEKCEKCTASQDQANRRIEFKI 518 >gi|134292850|ref|YP_001116586.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134136007|gb|ABO57121.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 226 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LP+ VL +I L+ H++ I + GHTD P N + NW LS RA Sbjct: 119 LFNVGDARLLPDAAPVLTQIARALSEHASGDILVEGHTDNVPIANAKYESNWELSSARAG 178 Query: 294 SAYQVLMKSGVSEDRISKIS 313 S + L + GV+ R++ I Sbjct: 179 SVVRYLAERGVAPHRLAAIG 198 >gi|255534563|ref|YP_003094934.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium 3519-10] gi|255340759|gb|ACU06872.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium 3519-10] Length = 300 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L+ K+ +L + D++ VL + ++IS+ D+ ++ +P VL K Sbjct: 141 LSNKLKRSLDNIADDDVQVKVL----KGVVMISLSDKM---LYKTGDYNVMPAAQEVLGK 193 Query: 255 IGEVLA-HSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310 + +V+ + T + I G+TD P N+ +DNW LS RA S ++L K GV+ RI+ Sbjct: 194 VAQVINDYDTYSVLIEGNTDNVPLSSANLPKDNWDLSALRATSMAKILQTKFGVNPARIT 253 Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338 G + + K AS + NRR +I++ Sbjct: 254 A-GGRSEYNPKTTNASVSGRAENRRTEIII 282 >gi|284040562|ref|YP_003390492.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283819855|gb|ADB41693.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 294 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 17/133 (12%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273 V E + + +SI D+ +F S P+ VL K+ +V+ H I + GHTD Sbjct: 150 VQVEVKKGVVYVSISDK---LLFKSGSYDITPKAETVLGKVAKVVNDHKDLDILVEGHTD 206 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 A P A +DNW LS RA S + L K GV+ +R++ A R + A N+ Sbjct: 207 AVPISTPAIKDNWDLSALRATSVVRTLQAKFGVAPERLT-----AGGRSEFAPKDDNTTA 261 Query: 331 -----NRRIDILV 338 NRR +I++ Sbjct: 262 VGRQQNRRTEIII 274 >gi|301056021|ref|YP_003794232.1| motility protein B [Bacillus anthracis CI] gi|300378190|gb|ADK07094.1| motility protein B [Bacillus cereus biovar anthracis str. CI] Length = 262 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIA---SDPMN 328 P N NW LS RA + QVL+++ + ++ S I G+ +R IA + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYR-SIAPNNTQEGK 244 Query: 329 SANRRIDILV 338 + NRR+++ + Sbjct: 245 AKNRRVEVFI 254 >gi|49478673|ref|YP_038563.1| flagellar motor protein MotB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196034432|ref|ZP_03101841.1| chemotaxis protein MotB [Bacillus cereus W] gi|49330229|gb|AAT60875.1| motility protein B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195992974|gb|EDX56933.1| chemotaxis protein MotB [Bacillus cereus W] Length = 262 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%) Query: 217 FET--TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD 273 F+T T G++++I++ +FD + E++ + +++ +L + S I++ GHTD Sbjct: 130 FQTKLTEKGLMVTILE---NVLFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTD 186 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIA---SDPMN 328 P N NW LS RA + QVL+++ + ++ S I G+ +R IA + Sbjct: 187 NVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYR-SIAPNNTQEGK 244 Query: 329 SANRRIDILV 338 + NRR+++ + Sbjct: 245 AKNRRVEVFI 254 >gi|23099999|ref|NP_693465.1| motility protein B [Oceanobacillus iheyensis HTE831] gi|22778230|dbj|BAC14500.1| motility protein B (flagellar motor rotation) [Oceanobacillus iheyensis HTE831] Length = 257 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--- 88 SW + YAD +T+L+A F+V++ A D + EQ + F A G+ D Q Sbjct: 16 SWLLPYADLLTLLVALFIVLF---AMSDINIQKYEQLASVFRSEFSNAGSGVLDHQEIPV 72 Query: 89 -PPERSS--QNKIDLSIDEHITKNSVDLK 114 PPE+ +N+ DE ++K+ +L+ Sbjct: 73 PPPEQEEVDENEDSEEQDEQLSKSESELR 101 >gi|209550830|ref|YP_002282747.1| hypothetical protein Rleg2_3254 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536586|gb|ACI56521.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 343 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + + Sbjct: 264 VLRVDGHTDNVPLAGTGRYRDNWELSSARAISVVKFLIAQGVPADRLVA-AGFGEFQPIA 322 Query: 322 IASDP-MNSANRRIDI 336 P + NRRI++ Sbjct: 323 PGETPDARATNRRIEL 338 >gi|299134013|ref|ZP_07027206.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] gi|298590760|gb|EFI50962.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] Length = 464 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARD 283 L++ + + T F+ ++ P++ +L ++ E VL T I I GHTD++ + Sbjct: 351 LLTGLLAKGTIQFETGKAVIDPDSAGLLDRLIEAVLRCPTSQIEIEGHTDSNGEKEA--- 407 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N LS+ RA + +K+GV ++RIS + GF R ++D + NRRI+ +V Sbjct: 408 NLALSMRRAQAVADYFIKAGVPKERISAV-GFGSERPVASNDTEEGKAQNRRIEFVV 463 >gi|288959276|ref|YP_003449617.1| outer membrane protein [Azospirillum sp. B510] gi|288911584|dbj|BAI73073.1| outer membrane protein [Azospirillum sp. B510] Length = 146 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 10/105 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD +S++ PE+ VL K+ V+ + T I GHTDA + D N LS RA Sbjct: 44 FDFNSAVIKPESRAVLDKVAAVMTTAGTTRFRIVGHTDA-----VGGDAANLALSKRRAA 98 Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L + + DR+ ++SG L + P +ANRR++I+ Sbjct: 99 AVVEYLASRHRIQRDRL-EVSGMGARELLLPDQPTAAANRRVEII 142 >gi|148261080|ref|YP_001235207.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146402761|gb|ABQ31288.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 456 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L G + I KG E G + +I NT +F S+ + ++ KIG+ LA Sbjct: 315 LRGFLQPEITKG---EVAVLGTVNAPVIRINNTGLFASGSATVESTALPLISKIGQALAR 371 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + G+TD+ P + +N LS DRA +A VL ++ + RI+ A + Sbjct: 372 EKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGAADPI 431 Query: 321 KIASDPMNSA-NRRIDILV 338 + P A NRRI+I++ Sbjct: 432 ATNATPQGRALNRRIEIVL 450 >gi|229121280|ref|ZP_04250511.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] gi|228662125|gb|EEL17734.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] Length = 224 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 10/178 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K L K +D E+ K +P +S EK M KKR+ +L KK L V +N + Sbjct: 44 SKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKK----LKAYVDNNGI 99 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V TG+ + I+D +FD + PE ++ ++ I + GHT Sbjct: 100 SQVNVYREDTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHT 156 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN 328 D+ P N NW LS RA + L++ +D+ G+A + + +D P N Sbjct: 157 DSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQN 214 >gi|281420329|ref|ZP_06251328.1| lipoprotein PG3 [Prevotella copri DSM 18205] gi|281405631|gb|EFB36311.1| lipoprotein PG3 [Prevotella copri DSM 18205] Length = 248 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + VL ++T+ +SI+G+TDA+ I N LS RA + Y L GV+ ++ Sbjct: 148 LAQFAGVLKNNTDCEVSIQGYTDATGNDGI---NLPLSQKRAEAVYNYLASCGVTSRQVK 204 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + GF + + + NRR+++ + Q Sbjct: 205 NVQGFGSANPVVNTTAACAQNRRVEVYMYASQ 236 >gi|167950042|ref|ZP_02537116.1| flagellar motor protein MotB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 9/134 (6%) Query: 211 IVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 I +G+L ET T I+I I ++ + F + P V+ KI +V+A + + + Sbjct: 6 IDEGMLEVETEATKIIIRIQEKGS---FGSGRATLNPGFFDVISKITKVIASTPGKVVVA 62 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM 327 GHTD P R NW LS DRA + ++ + G+ R+S + G A + +D Sbjct: 63 GHTDDIPISTKRFRSNWELSSDRAVTVVHAMLSNHGLDPSRVS-VEGHADSSPLVPNDSW 121 Query: 328 --NSANRRIDILVE 339 + NRR+++++E Sbjct: 122 ANRAKNRRVELIIE 135 >gi|253575920|ref|ZP_04853254.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844714|gb|EES72728.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 293 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 12/167 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235 PL++ ++ K+++ L +L K I S + DN ++ + GI I++ D+ Sbjct: 128 PLTERELAFRKQEEELANLMKLIES----YIKDNSLEDQIHVADLPQGISITLSDRF--- 180 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAY 293 +FD + + L K+ + VISI GHTD P + + +DNW LS RA Sbjct: 181 LFDTGKADLKSGSAKTLAKLASLFRQLDTVISIEGHTDNLPIVYASEFKDNWELSGARAL 240 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 S + + + + + +G+A R +D NRR++I V Sbjct: 241 SVLRFFVDKEKLDPQQFQYAGYADTRPAADNDTPEGRQKNRRVEITV 287 >gi|330947752|gb|EGH48208.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 102 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 6/100 (6%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P + +L+ + + + V+ I G+TD++ R +DN +LS DRA + VLM GV Sbjct: 1 PPSRTILKVVQFLQINPRRVVRIEGYTDSTGDR---QDNLKLSKDRAQAVADVLMDLGVD 57 Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 E RI + G+ A S+ + NRR++I+ D +G Sbjct: 58 EKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 96 >gi|322435021|ref|YP_004217233.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321162748|gb|ADW68453.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 255 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 26/162 (16%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 KE + A KK+L A + +T GLV + R F Sbjct: 104 KEVVKAQVEKKQLTSDAVSVRATGDGLV---------------------VSLREAGFFAS 142 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298 S+ PE + VLQ + L + + + GHTD P NW LS RA + ++ Sbjct: 143 GSADVRPEALAVLQTVAAALPRQS--MRVEGHTDNIPIHTTQFATNWELSTARAATITRL 200 Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 L+ + +G A R A+D + NRR+DI++ Sbjct: 201 LIAQNAVDPAQVSAAGDAEFRPIADNATDAGRAQNRRVDIIL 242 >gi|90418921|ref|ZP_01226832.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1] gi|90337001|gb|EAS50706.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1] Length = 342 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 L E IV L + E+ + +I + GHTD P DNW LS +RA + + L+ G Sbjct: 246 LAEAIVALNR--EIPSDINWIIRVDGHTDNVPISGGRFEDNWELSTERAGAVVKYLISQG 303 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDR 341 V +R++ +GF ++ DP N+ NRRI+ + +R Sbjct: 304 VPPERLAA-TGFGEYQ---PIDPDNTPEARARNRRIEFKLTER 342 >gi|256823714|ref|YP_003147677.1| type IV / VI secretion system protein, DotU family [Kangiella koreensis DSM 16069] gi|256797253|gb|ACV27909.1| type IV / VI secretion system protein, DotU family [Kangiella koreensis DSM 16069] Length = 439 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294 M+ +S+ +I +++KIG++ + I + GH+D F NW LSL RA S Sbjct: 318 MYSSASAQLNENSIALIEKIGQIATTTPGHIQVVGHSDDQKIFTAKYHSNWELSLARANS 377 Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++L ++ R+ ++ G A R+ +D + NRR++IL+ Sbjct: 378 VVRILNQNQNLAGRVTAEGRGAAEPRVANDTDTNRALNRRVEILL 422 >gi|260172785|ref|ZP_05759197.1| putative flagellar motor protein MotB [Bacteroides sp. D2] Length = 256 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR---- 191 N+Q S KN L RD+ K + + ++N E L L +K + ++R Sbjct: 25 NAQMSAQIKN-LLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINE 83 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPL 245 LQD+ K + + L+++ VK L + + + D + + +F S+ Sbjct: 84 LQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREKDGKVYVAMSDKLLFQSGSARLD 141 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K+ Sbjct: 142 KRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 200 >gi|261341826|ref|ZP_05969684.1| hypothetical protein ENTCAN_08313 [Enterobacter cancerogenus ATCC 35316] gi|288316202|gb|EFC55140.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR+G I I++ N FD SS+ P L + VL +S +++ G Sbjct: 92 MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYSKTAVNVIG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD++ +++ N RLS RA S L+ GV+ +RI + SG IAS+ Sbjct: 151 YTDSTGSQDL---NMRLSQQRADSVASALITQGVAANRI-RTSGMGPAN-PIASNSTAEG 205 Query: 328 NSANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 206 KAQNRRVEITLSPVQ 220 >gi|238916758|ref|YP_002930275.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750] gi|238872118|gb|ACR71828.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750] Length = 266 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292 +FD + P+ + +L K+ + L + VI+I GHTD P N +R +N LSL RA Sbjct: 154 LFDSGKAELTPQALTLLDKVADALIEYDDNVITIEGHTDNVPI-NTSRYPNNMMLSLYRA 212 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSA-NRRIDILV 338 YS + + D+ SG + IA + P A NRR++I V Sbjct: 213 YSVFDFFVSDKGFSDKTMSSSGRGDA-VPIADNGTPEGRAQNRRVEIKV 260 >gi|237722039|ref|ZP_04552520.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298483221|ref|ZP_07001400.1| flagellar motor protein MotB [Bacteroides sp. D22] gi|229448908|gb|EEO54699.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298270538|gb|EFI12120.1| flagellar motor protein MotB [Bacteroides sp. D22] Length = 280 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ +T K Q L NN + N Q S KN L RD+ K + + ++N E Sbjct: 28 EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 85 Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 L L +K + ++R LQD+ K + + L+++ VK L + + + Sbjct: 86 KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 143 Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281 D + + +F S+ L K+ EVL T++ + I GHTD P + Sbjct: 144 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 203 Query: 282 RDNWRLSLDRAYSAYQVLMKS 302 +DNW LS+ RA S ++L+K+ Sbjct: 204 KDNWDLSVIRATSVVRILIKN 224 >gi|15893597|ref|NP_346946.1| chemotaxis motility protein B, gene motB [Clostridium acetobutylicum ATCC 824] gi|15023148|gb|AAK78286.1|AE007545_3 Chemotaxis motility protein B, gene motB [Clostridium acetobutylicum ATCC 824] gi|325507717|gb|ADZ19353.1| Chemotaxis motility protein B, gene motB [Clostridium acetobutylicum EA 2018] Length = 256 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 24/183 (13%) Query: 167 INKEENYFLPPLSKEKILAMKRKK-RLQDLAKKI-----SSTLSGLVADNIVKGVLFETT 220 I +Y SK+ A K ++ +L+D+ KKI + + G V+ N+ Sbjct: 72 IKSTSSYVTQEASKQSASAEKAEENKLKDVKKKIDQYVNQNGMQGSVSTNL--------Q 123 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G+++SI+D T MFD + P+ L +IGE+L I I GHTD +P N Sbjct: 124 EKGLVVSIVD---TLMFDTGRAEVKPDFQKKLVEIGEILKTIDNYIRIEGHTDNTPISNS 180 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA----NRRID 335 N L R+ + + + VS+ ++++ ++ + +D + A NRR+D Sbjct: 181 QYASNIELGSARSNNVEHLFID--VSKIPVTQMYTVSYADTRPVADNNSEAGKARNRRVD 238 Query: 336 ILV 338 I++ Sbjct: 239 IVI 241 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMW 52 + P N W + Y+D +T+LMAFF+VM+ Sbjct: 7 EEPENSERWLLTYSDLITLLMAFFIVMY 34 >gi|221638712|ref|YP_002524974.1| hypothetical protein RSKD131_0613 [Rhodobacter sphaeroides KD131] gi|221159493|gb|ACM00473.1| OmpA/MotB domain protein [Rhodobacter sphaeroides KD131] Length = 525 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 14/119 (11%) Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285 +F+ S+ PE V+Q + E+ E +I + GHTD P RDNW Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 LS RA S + + +S G R++ +GF +R D + + NRRI++ + +R Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSADARAQNRRIELKLTER 525 >gi|15641766|ref|NP_231398.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585850|ref|ZP_01675644.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80] gi|121727708|ref|ZP_01680803.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52] gi|147673520|ref|YP_001217304.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395] gi|153819630|ref|ZP_01972297.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457] gi|153821127|ref|ZP_01973794.1| hypothetical protein A5E_2064 [Vibrio cholerae B33] gi|227081908|ref|YP_002810459.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2] gi|229508134|ref|ZP_04397639.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286] gi|229511627|ref|ZP_04401106.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33] gi|229518766|ref|ZP_04408209.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9] gi|229607695|ref|YP_002878343.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236] gi|255744822|ref|ZP_05418772.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101] gi|262161895|ref|ZP_06030913.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE 91/1] gi|262169763|ref|ZP_06037454.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27] gi|298498167|ref|ZP_07007974.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656285|gb|AAF94912.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549988|gb|EAX60006.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80] gi|121630005|gb|EAX62413.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52] gi|126509834|gb|EAZ72428.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457] gi|126521323|gb|EAZ78546.1| hypothetical protein A5E_2064 [Vibrio cholerae B33] gi|146315403|gb|ABQ19942.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395] gi|227009796|gb|ACP06008.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2] gi|227013663|gb|ACP09873.1| chemotaxis protein MotB-related protein [Vibrio cholerae O395] gi|229343455|gb|EEO08430.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9] gi|229351592|gb|EEO16533.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33] gi|229355639|gb|EEO20560.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286] gi|229370350|gb|ACQ60773.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236] gi|255737293|gb|EET92688.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101] gi|262021997|gb|EEY40707.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27] gi|262028627|gb|EEY47282.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE 91/1] gi|297542500|gb|EFH78550.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 244 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 69/164 (42%), Gaps = 34/164 (20%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256 L NI+ V E + +++ I D +S SSIP TI ++ IG Sbjct: 64 LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIG 123 Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300 VL HS + I I GHTD+ + NW LS DRA S + V Sbjct: 124 VVL-HSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182 Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336 K G E+ ++ +SG+A R L A+ S NRRIDI Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLHEANQQEKSQNRRIDI 226 >gi|118588357|ref|ZP_01545766.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614] gi|118439063|gb|EAV45695.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614] Length = 321 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTDA P R +NW LS RA S + L++ GV R+ +GF + Sbjct: 242 VLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRYLIERGVDPKRLVA-AGFGEFQPLE 300 Query: 323 ASDPMNSA--NRRIDILVEDR 341 D + NRRI++ + +R Sbjct: 301 EGDTQEALAKNRRIELKLTER 321 >gi|327405866|ref|YP_004346704.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321374|gb|AEA45866.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 687 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284 IS I+ FD +I PE+ + L K+ ++L A+ T I I GHTD R A N Sbjct: 564 ISNINPLKNVFFDLDKAILRPESFLELNKLRDLLKANPTMKIEIGGHTDT---RGDAAKN 620 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 +LS RA S + L+ G+ R+S GF + I D +N Sbjct: 621 MQLSDARAKSVKEYLIAQGIEASRLSS-KGFGATKPIITDDVIN 663 >gi|254440394|ref|ZP_05053888.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198255840|gb|EDY80154.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 315 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A+ + R + A++ L + I +G++ R GI+ + F S+ Sbjct: 157 ALNQMARAIEKAREAEEQLRANLQSEIEQGLVTVEQRDGIVFVSLGAGGA--FPSGSADL 214 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS 302 + ++++++G V + + + GHTD P F + RDNW L+ RA S Q + + Sbjct: 215 TQQASIIIEELGAVTSDPASRVIVSGHTDNVPISFGALYRDNWDLAAARAASVVQAIEAT 274 Query: 303 GVSEDRISKISGFAHHRLKIASD---PMNSANRRIDILVE 339 + R F + IA + NRRI+I +E Sbjct: 275 NPVQGRTMSAVSFGQTQ-PIADNFTAEGREQNRRIEIEIE 313 >gi|148546771|ref|YP_001266873.1| flagellar motor protein MotD [Pseudomonas putida F1] gi|148510829|gb|ABQ77689.1| OmpA/MotB domain protein [Pseudomonas putida F1] gi|313497822|gb|ADR59188.1| Flagellar motor protein MotD [Pseudomonas putida BIRD-1] Length = 285 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 24/206 (11%) Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +GK S L N E P P+ E+ L+++ + L K T +GL A N+ Sbjct: 42 EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98 Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 V+ + T R L I+ ++ +F ++P + +++K+ Sbjct: 99 DPLKTISDDVRDAFGDLINSDQMTVRGNELWVEIELNSSLLFGSGDAMPSDKAFAIIEKV 158 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + G TD P R NW LS RA S ++L GV+ R++ + G Sbjct: 159 ANILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217 Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338 + ++ ++D + NRR+ +++ Sbjct: 218 YGEYQPVASNDTAEGRARNRRVVLVI 243 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 >gi|89094432|ref|ZP_01167372.1| chemotaxis protein MotB [Oceanospirillum sp. MED92] gi|89081324|gb|EAR60556.1| chemotaxis protein MotB [Oceanospirillum sp. MED92] Length = 311 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 11/52 (21%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 W I YADF+T+L AFF+VM+ I++ ++ E+Y KNL A G+F Sbjct: 16 WVISYADFITLLFAFFVVMYAISSVNE------EKY-----KNLTDALAGVF 56 >gi|269967472|ref|ZP_06181529.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B] gi|269827913|gb|EEZ82190.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B] Length = 430 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I+ +S +A I KG++ E + + IS+ Q +F+ S+ + V+ K+ Sbjct: 287 IAEKISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343 Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315 L + I + GHTD P F + NW LSL RA + + L+ + E R I + G Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSALEGRVIPEGLGD 403 Query: 316 AHHRLKIASDPMNSANRRIDI 336 A ++ +SD + NRRI+I Sbjct: 404 ARPLVENSSDENRAINRRIEI 424 >gi|262198644|ref|YP_003269853.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081991|gb|ACY17960.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 637 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 8/99 (8%) Query: 247 ETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 E+ +L + + + ++ I ++GHTDA R A N RLS +RA S L+K GV Sbjct: 540 ESFPILDAVAATIMGNPDIRLIEVQGHTDA---RGSASYNLRLSDERAKSVRAYLLKKGV 596 Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 DR+ G+ + +S + ++ NRR++ L+ +R Sbjct: 597 EPDRVDA-KGYGETKPIDSSNTEKAHATNRRVEFLIMNR 634 >gi|163801699|ref|ZP_02195597.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4] gi|159174616|gb|EDP59418.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4] Length = 244 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 34/164 (20%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256 L NI+ V E + +++ I D +S SSIP TI L+ IG Sbjct: 64 LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQALKDIG 123 Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300 VL HS + + I GHTD+ + NW LS DRA S + V Sbjct: 124 VVL-HSAIQKKDRFQYLDTVFIEGHTDSDGIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182 Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336 K G E+ ++ +SG+A R L+ ++ S NRRIDI Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKSQNRRIDI 226 >gi|291613389|ref|YP_003523546.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291583501|gb|ADE11159.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 163 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSL 289 ++ + FD + E + V+QK E L H +V++++G+ D R + N L Sbjct: 54 EKQSDYFDFNKYTVKSEYMNVIQKEAEFLKTHKNDVVTLQGNADE---RGSEKYNLGLGE 110 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 +RA + +VL K GV D+I +S G RL + NRR+D L Sbjct: 111 NRADAVAKVLEKDGVPADQIKMVSLGKDKPRLTCHKEKCWKENRRVDFL 159 >gi|84683658|ref|ZP_01011561.1| flagellar motor protein [Maritimibacter alkaliphilus HTCC2654] gi|84668401|gb|EAQ14868.1| flagellar motor protein [Rhodobacterales bacterium HTCC2654] Length = 617 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321 ++ + GHTD+ PFR A DNW LS RA S + + + G DR+ +GF + Sbjct: 537 ILRVDGHTDSQPFRGNAEYADNWELSQARALSVVRYMQDQLGFPPDRLVA-AGFGEWQ-P 594 Query: 322 IA---SDPMNSANRRIDI 336 IA SD +ANRRI++ Sbjct: 595 IAEGDSDEALAANRRIEL 612 >gi|91224571|ref|ZP_01259832.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01] gi|91190459|gb|EAS76727.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01] Length = 430 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I+ +S +A I KG++ E + + IS+ Q +F+ S+ + V+ K+ Sbjct: 287 IAEKISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343 Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315 L + I + GHTD P F + NW LSL RA + + L+ + E R I + G Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSALEGRVIPEGLGD 403 Query: 316 AHHRLKIASDPMNSANRRIDI 336 A ++ +SD + NRRI+I Sbjct: 404 ARPLVENSSDENRAINRRIEI 424 >gi|299145102|ref|ZP_07038170.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23] gi|298515593|gb|EFI39474.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23] Length = 280 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ +T K Q L NN + N Q S KN L RD+ K + + ++N E Sbjct: 28 EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 85 Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 L L +K + ++R LQD+ K + + L+++ VK L + + + Sbjct: 86 KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 143 Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281 D + + +F S+ L K+ EVL T++ + I GHTD P + Sbjct: 144 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 203 Query: 282 RDNWRLSLDRAYSAYQVLMKS 302 +DNW LS+ RA S ++L+K+ Sbjct: 204 KDNWDLSVIRATSVVRILIKN 224 >gi|237716994|ref|ZP_04547475.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405762|ref|ZP_06082312.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229442977|gb|EEO48768.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356637|gb|EEZ05727.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 280 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ +T K Q L NN + N Q S KN L RD+ K + + ++N E Sbjct: 28 EMAATASKDSLQGLLNNSREVGN-QLSAQVKN-LLRDTTKMGNSIRQYQSMLNVNMTEQE 85 Query: 174 FLPPLSKEKILAMKRKKR----LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 L L +K + ++R LQD+ K + + L+++ VK L + + + Sbjct: 86 KLNALLSQKKNELNERERTINELQDMIKAQNDKVQNLLSN--VKDALLGFSTDELTVREK 143 Query: 230 DQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA- 281 D + + +F S+ L K+ EVL T++ + I GHTD P + Sbjct: 144 DGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQF 203 Query: 282 RDNWRLSLDRAYSAYQVLMKS 302 +DNW LS+ RA S ++L+K+ Sbjct: 204 KDNWDLSVIRATSVVRILIKN 224 >gi|225382176|gb|ACN89316.1| hypothetical protein VEPGS_0610 [Vibrio alginolyticus] Length = 430 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I+ +S +A I KG++ E + + IS+ Q +F+ S+ + V+ K+ Sbjct: 287 IAEKISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343 Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315 L + I + GHTD P F + NW LSL RA + + L+ + E R I + G Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSALEGRVIPEGLGD 403 Query: 316 AHHRLKIASDPMNSANRRIDI 336 A ++ +SD + NRRI+I Sbjct: 404 ARPLVENSSDENRAINRRIEI 424 >gi|167463460|ref|ZP_02328549.1| flagellar motor protein MotB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 258 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%) Query: 186 MKRK-KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSI 243 M+RK K LQD+ K T+ + +N ++ + + G+ +++ D +FD + Sbjct: 103 MERKEKELQDILK----TVQAYIEENHLEAQIAVGNSERGVSVTLKDLF---LFDLGKAE 155 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 PE VL K+ + ISI GHTD P R + +DNW LS R+ S + Sbjct: 156 LKPEAYPVLNKLASLFPTLDTKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTT 215 Query: 302 SGVSEDRISKI--SGFAHHRLKIASDPMN--SANRRIDILV 338 + SK +G+A +D M + NRR++I++ Sbjct: 216 KADPKISDSKFMSTGYADTIPVAPNDSMENRAKNRRVEIVI 256 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK---NLMTASKGIFDEQNP 89 W + YAD +T+L+AFF++M+ ++ D + + + Q + K ++++ + G+ + P Sbjct: 21 WLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKESNSILSMNSGVSGQNMP 80 Query: 90 PERS 93 P+ + Sbjct: 81 PKST 84 >gi|78356582|ref|YP_388031.1| motB protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218987|gb|ABB38336.1| motB protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 245 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +++ +K+L + +K+ S + + V+GV+ G++ I +F+K+S Sbjct: 84 SVRLQKQLIEAQRKVYSDVRTFLNRKGVEGVIGAVFDEGVIT--IKVPAGVLFEKNSVDI 141 Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMK 301 + + +L+ + + L + I+IRG+TD S + RDNW +S RA + + +K Sbjct: 142 SADGLSMLEGLNDFFLKKKDQSINIRGYTDDSVPAAGSRFRDNWEISALRAVNVLRFFLK 201 Query: 302 SGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 SG+ R++ G S+ + NRR++ ++E R G Sbjct: 202 SGIEPGRLTATGLGDLDPLFPNTSEENRAKNRRVEFVLERRVG 244 >gi|163796351|ref|ZP_02190312.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159178493|gb|EDP63035.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 561 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 ++ + GHTD P N R NW LS RA S + L+ G+ +R+S +G+ ++ Sbjct: 487 ILQVEGHTDTVPIHNEQFRSNWELSAARAISVVKYLVDQGIPAERLSA-TGYGEYQ---- 541 Query: 324 SDPMNSA----NRRIDI 336 P++ A NRRI++ Sbjct: 542 --PIDPADLERNRRIEM 556 >gi|269792934|ref|YP_003317838.1| OmpA/MotB domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100569|gb|ACZ19556.1| OmpA/MotB domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 241 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KR Q+ + I+ L L + ++ + + G+ +S+ +Q +F S+ P Sbjct: 86 KRTQEFKEGIARQLQALAKEEGLQSQMKVHVDQRGVTVSMSEQF---LFAPGSAELSPFA 142 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSE 306 VL K+G+VL +S GHTD +P + DNW LS RA + ++ + G+S+ Sbjct: 143 RRVLFKVGQVLRVVRFPLSFEGHTDNTPMEGGLYGDNWGLSAARAAAVASYMVNRIGLSD 202 Query: 307 DRISKISGFAHHRLKIASD-PMNSA-NRRIDILV 338 + + G+ + + +D P + A NRR+DI++ Sbjct: 203 KNVQAV-GYGPSKPLVPNDTPEHRAINRRVDIVI 235 >gi|325271956|ref|ZP_08138407.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51] gi|324102904|gb|EGC00300.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51] Length = 285 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYS 294 +F ++P + +++K+ ++L + + G TD P R NW LS RA S Sbjct: 139 LFGSGDAMPSDKAFAIIEKVADILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAAS 198 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 ++L GV+ R++ + G+ ++ ++D + + NRR+ +++ Sbjct: 199 IVRLLAMEGVNPARMASV-GYGEYQPVASNDTADGRARNRRVVLVI 243 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 >gi|218459695|ref|ZP_03499786.1| hypothetical protein RetlK5_09429 [Rhizobium etli Kim 5] Length = 91 Score = 42.7 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF + Sbjct: 12 VLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AGFGEFQPIA 70 Query: 323 ASDP--MNSANRRIDILVEDR 341 D + NRRI++ + ++ Sbjct: 71 PGDTPEARATNRRIELKLTEK 91 >gi|88704268|ref|ZP_01101982.1| flagellar motor protein MotB [Congregibacter litoralis KT71] gi|88701319|gb|EAQ98424.1| flagellar motor protein MotB [Congregibacter litoralis KT71] Length = 272 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 4/106 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F S L +I +LQ++ E L + ++GHTD P RN NW LS RA + Sbjct: 156 LFPSGSRSLLASSIPMLQRLAETLGGLPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAA 215 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 +V G+ R+S + GF +R ++ + NRR+ ILV Sbjct: 216 VARVFEDEGIDPSRLSAV-GFGPNRPITDNLTEESRAENRRVVILV 260 >gi|311992350|gb|ADQ26748.1| flagellar stator protein [Aeromonas hydrophila] Length = 291 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFNPFGK 74 + KKK A + P N W + YADFMT+L A F+V++ A +T+ I+ + GK Sbjct: 1 VAKKKKA--EAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLGK 58 Query: 75 -NLMTASKG 82 L++ + G Sbjct: 59 IGLISPAAG 67 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 23/114 (20%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293 +F S+ P+ I ++ KI +LA + + GHTD S P + R NW LS+ R+ Sbjct: 171 LFPADSAFLQPQFIPLVNKISGILADIPGKVVVTGHTDNSQAPV-ELYRSNWELSVLRSA 229 Query: 294 SAYQVLM-----------KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 S L+ GV++ + + A HR ANRR++I Sbjct: 230 SIVHTLLTNPKLDATRVIAQGVADAQPRYPNDTAEHR---------QANRRVEI 274 >gi|157889001|dbj|BAF80950.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G+VL + + +I GHTD++ + N +LSL+RA + + L KSGV Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKVY---NQKLSLERAKAVAKELEKSGV 289 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335 ++++I+ G+ + K ++D + NRR++ Sbjct: 290 AKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|157889016|dbj|BAF80962.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 7/93 (7%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G+VL + + +I GHTD++ + N +LSL+RA + + L KSGV Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKSGV 289 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335 +++I+ G+ + K ++D + NRR++ Sbjct: 290 VKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|332557731|ref|ZP_08412053.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N] gi|332275443|gb|EGJ20758.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N] Length = 525 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%) Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285 +F+ S+ PE V+Q + E+ E +I + GHTD P RDNW Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS RA S + + +S G R++ +GF +R D + NRRI++ + +R Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSPDARAQNRRIELKLTER 525 >gi|188587883|ref|YP_001922642.1| chemotaxis MotB protein [Clostridium botulinum E3 str. Alaska E43] gi|188498164|gb|ACD51300.1| putative chemotaxis MotB protein [Clostridium botulinum E3 str. Alaska E43] Length = 244 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 18/125 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS D F+ + E L I ++L + I + G+TD N+A Sbjct: 115 GLIISFNDN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTD-----NVAI 166 Query: 282 -----RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRR 333 NW+LS RA + ++L+K G +S D++S I G+ +R ++D + +ANRR Sbjct: 167 NTENFHSNWQLSAIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRR 225 Query: 334 IDILV 338 +DI++ Sbjct: 226 VDIVI 230 >gi|26991025|ref|NP_746450.1| flagellar motor protein MotD [Pseudomonas putida KT2440] gi|24986055|gb|AAN69914.1|AE016630_5 flagellar motor protein MotB [Pseudomonas putida KT2440] Length = 285 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 24/206 (11%) Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +GK S L N E P P+ E+ L+++ + L K T +GL A N+ Sbjct: 42 EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98 Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 V+ + T R L I+ ++ +F ++P + +++K+ Sbjct: 99 DPLKTISDDVRDAFGDLINSDQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKV 158 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + G TD P R NW LS RA S ++L GV+ R++ + G Sbjct: 159 ASILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217 Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338 + ++ ++D + NRR+ +++ Sbjct: 218 YGEYQPVASNDTAEGRARNRRVVLVI 243 >gi|126461734|ref|YP_001042848.1| hypothetical protein Rsph17029_0965 [Rhodobacter sphaeroides ATCC 17029] gi|126103398|gb|ABN76076.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 525 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%) Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285 +F+ S+ PE V+Q + E+ E +I + GHTD P RDNW Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS RA S + + +S G R++ +GF +R D + NRRI++ + +R Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSPDARAQNRRIELKLTER 525 >gi|251777807|ref|ZP_04820727.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082122|gb|EES48012.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 244 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 18/125 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS D F+ + E L I ++L + I + G+TD N+A Sbjct: 115 GLIISFNDN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTD-----NVAI 166 Query: 282 -----RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRR 333 NW+LS RA + ++L+K G +S D++S I G+ +R ++D + +ANRR Sbjct: 167 NTENFHSNWQLSAIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRR 225 Query: 334 IDILV 338 +DI++ Sbjct: 226 VDIVI 230 >gi|2853603|gb|AAC08067.1| MotB [Pseudomonas putida] Length = 285 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 24/206 (11%) Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +GK S L N E P P+ E+ L+++ + L K T +GL A N+ Sbjct: 42 EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98 Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 V+ + T R L I+ ++ +F ++P + ++ K+ Sbjct: 99 DPLKTISDDVRDAFGDLINSNQMTVRGNELWIEIELSSSLLFGSGDAMPSDKAFAIIDKV 158 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + G TD P R NW LS RA S ++L GV+ R++ + G Sbjct: 159 ASILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217 Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338 + ++ +D + NRR+ +++ Sbjct: 218 YGEYQPVAGNDTAEGRARNRRVVLVI 243 >gi|157889006|dbj|BAF80954.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 7/93 (7%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G+VL + + +I GHTD++ + N +LSL+RA + + L KSGV Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTDSTGSKVY---NQKLSLERAKAVAKELEKSGV 289 Query: 305 SEDRISKISGFAHHRLKIASDPMN--SANRRID 335 ++++I+ G+ + K ++D + NRR++ Sbjct: 290 AKEKIA-AKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|149277137|ref|ZP_01883279.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39] gi|149232014|gb|EDM37391.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39] Length = 280 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 S+ + K++ L + K QY R+++N L ++ SE N L++D +K + K Sbjct: 54 SLIAKLRKDTTGLSSALNDMKNQYSRMDSNYNKLRSNSSSEI--NKLSQDLKKREQRLKE 111 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 E+IL KR + L +K+ L G G+ E Sbjct: 112 V-------------------EEILR-KRDEATNQLKEKLQQALLGFTKS----GLTVEIK 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 + +S+ D+ P S SI + E L ++ VL E+ I++ GHTD+ Sbjct: 148 NGKVYVSMTDKLLFP----SGSIVIDEKGKQALTQLATVLKQQPEINIAVEGHTDSQKIT 203 Query: 279 NIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 N+ +DNW LS+ R+ S + L + E +G + + A+ S NRRI Sbjct: 204 NLGQIKDNWDLSVLRSTSVVRYLTEVNKVESVRMTATGKGEFQPLVSNANAEGRSKNRRI 263 Query: 335 DILV 338 +I++ Sbjct: 264 EIVL 267 >gi|71280941|ref|YP_267837.1| flagellar motor protein MotB [Colwellia psychrerythraea 34H] gi|71146681|gb|AAZ27154.1| sodium-driven polar flagellar protein [Colwellia psychrerythraea 34H] Length = 314 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 41/283 (14%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN----LMTASK 81 P L +W +AD M++LM FF+++ + D K I FG + K Sbjct: 10 PPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKIEVKDIPK 69 Query: 82 G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G I ++ P + I++ + + L+ + ++ R E Q Sbjct: 70 GTSIIAQEFRPGKPEPTPIEVIQQQTMEMTQQMLEFQAGDETSAGGRQEQR--GTERGGQ 127 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S++ +++L S++ D K D+E++ ++ N +L KKI Sbjct: 128 SQNTEDAL---SQQALDQAKQ-DMEEAAQEQVN---------------------ELVKKI 162 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L + D ++ E+ ++I I R F S+ P+ V+++IGE+L Sbjct: 163 AEQLEQQIQDGAIE---LESLGQQVIIRI---RENGSFPSGSAFLQPKFWPVIREIGELL 216 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK 301 I I GHTD + NW LS RA + L+K Sbjct: 217 NTVPGEIMISGHTDNRGVDSELFSSNWDLSSKRAVAIAHQLIK 259 >gi|121533429|ref|ZP_01665257.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] gi|121307988|gb|EAX48902.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] Length = 262 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 8/133 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N+ + T G++I I ++T +F + PE++ + +I ++A ++ + + Sbjct: 123 NLAGDIQTALTDDGLMIRI---KDTALFASGRAELKPESLRLGTEIARMIAPLSQRVIVA 179 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P NW LS RA + + ++ ++ + +RIS +SG+ +R ++D Sbjct: 180 GHTDNMPINTPEFPSNWDLSTKRALNFMKYMLSQAEIKPERIS-VSGYGEYRPVASNDTE 238 Query: 328 N--SANRRIDILV 338 + NRR+++L+ Sbjct: 239 EGRAKNRRVEVLI 251 >gi|167034899|ref|YP_001670130.1| flagellar motor protein MotD [Pseudomonas putida GB-1] gi|166861387|gb|ABY99794.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 285 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 24/206 (11%) Query: 153 KGKDLCKSTDLEKSINKEENYFLP-PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +GK S L N E P P+ E+ L+++ + L K T +GL A N+ Sbjct: 42 EGKYKVISQALLGVFNDPERSMKPIPIGDEQPLSVRPA---EPLVKDSEQTEAGLAATNV 98 Query: 212 ---------VKGVLFE-------TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 V+ + T R L I+ ++ +F ++P + ++ K+ Sbjct: 99 DPLKTISDDVRDAFGDLINSNQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIDKV 158 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + G TD P R NW LS RA S ++L GV+ R++ + G Sbjct: 159 ANILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-G 217 Query: 315 FAHHRLKIASDPMN--SANRRIDILV 338 + ++ ++D + + NRR+ +++ Sbjct: 218 YGEYQPVASNDTADGRARNRRVVLVI 243 >gi|120610159|ref|YP_969837.1| hypothetical protein Aave_1472 [Acidovorax citrulli AAC00-1] gi|120588623|gb|ABM32063.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 452 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 4/115 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284 SI+ R +FD +S+ P + V+Q+I L + + + G++D P R AR N Sbjct: 309 SIVTLRGDGLFDPASTEVKPRYVAVIQRIASALNEVSGKVVVNGYSDNQPIRT-ARFPSN 367 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 W LS +RA + +L ++ R+ + S P A NRR++I++ Sbjct: 368 WHLSQERAQAVAAMLQRTIADGSRLRAEGRAESDPIAPNSTPEGRALNRRVEIVL 422 >gi|77462842|ref|YP_352346.1| hypothetical protein RSP_2289 [Rhodobacter sphaeroides 2.4.1] gi|77387260|gb|ABA78445.1| Outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides 2.4.1] Length = 525 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%) Query: 236 MFDKSSSIPLPETIV----VLQKIGEVLAHSTE----VISIRGHTDASPFRNIA--RDNW 285 +F+ S+ PE V+Q + E+ E +I + GHTD P RDNW Sbjct: 408 LFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVDGHTDNVPLSGFGAFRDNW 467 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS RA S + + +S G R++ +GF +R D + NRRI++ + +R Sbjct: 468 ELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDSPDARAQNRRIELKLTER 525 >gi|332533102|ref|ZP_08408971.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] gi|332037384|gb|EGI73838.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] Length = 319 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWR 286 II+ + +F SS+ V++ + +++A + +RG+TD RN I R NW Sbjct: 153 IIELSSGMLFSSGSSVAHSRAKQVVKIVKDIIAPVDNYVRVRGYTDDESIRNEIFRSNWE 212 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 LS+ RA S L G++ R++ I G+ + Sbjct: 213 LSVARATSILVELEALGINSARMA-IEGYGQY 243 >gi|148559624|ref|YP_001259565.1| hypothetical protein BOV_1656 [Brucella ovis ATCC 25840] gi|148370881|gb|ABQ60860.1| OmpA/MotB domain [Brucella ovis ATCC 25840] Length = 314 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 235 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 290 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 291 ---PLDTANTADARARNRRIELKLTER 314 >gi|262395314|ref|YP_003287167.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] gi|262338908|gb|ACY52702.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] Length = 430 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 IS +S +A I KG++ E + + IS+ Q +F+ S+ + V+ K+ Sbjct: 287 ISERISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343 Query: 258 VLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGF 315 L + I + GHTD P F + NW LSL RA + + L+ + E R I + G Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSTLEGRVIPEGLGD 403 Query: 316 AHHRLKIASDPMNSANRRIDI 336 A ++ SD + NRRI+I Sbjct: 404 ARPLVENNSDENRAINRRIEI 424 >gi|258404712|ref|YP_003197454.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257796939|gb|ACV67876.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692] Length = 248 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD + P +L+++ +++ + + GHTD P NW +S++RA S Sbjct: 122 LFDSGETALKPRAAPLLREVAQLVRPLHLDMRVEGHTDNVPVSRPGISNWDISIERAVSV 181 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVE 339 + L + +G+ R + +D P N A NRR+D +E Sbjct: 182 VKFLTSRDLLPPSRLSAAGYGDQRPLVRNDSPENRAKNRRVDFYLE 227 >gi|224436415|ref|ZP_03657435.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818] gi|313142933|ref|ZP_07805126.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818] gi|313127964|gb|EFR45581.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818] Length = 250 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 266 ISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I +RG+TD + P + +DN+ LS R+ + + L+K+G+S +RIS SG+ H+ Sbjct: 153 IDVRGYTDNASLPIGSRYKDNYELSSARSLAVMKNLIKNGISPERIS-FSGYGEHQAVAP 211 Query: 324 SDP-MNSA-NRRIDIL 337 +D +N A N R++I Sbjct: 212 NDSTINRAKNNRVEIF 227 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I++T +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISSTGSADSEALKTEF 52 >gi|218133672|ref|ZP_03462476.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC 43243] gi|217991047|gb|EEC57053.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC 43243] Length = 266 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY 293 +FD S E + +L K+ +L ++ +I+I GHTD +P N DN LSL RAY Sbjct: 155 LFDSGKSELKTEAVTLLDKVSSILWEYNDNMIAIEGHTDNNPIHNSKYPDNTMLSLYRAY 214 Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDI 336 S + L + G D + ++ + IAS+ + NRR++I Sbjct: 215 SVFTYLTDQKGF--DASTMLATGRGESVPIASNATAEGRAQNRRVEI 259 >gi|170722824|ref|YP_001750512.1| flagellar motor protein MotD [Pseudomonas putida W619] gi|169760827|gb|ACA74143.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 285 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ-----------ALLGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T R L I+ ++ +F ++P + +++K+ +L + + G TD P R Sbjct: 122 TIRGNELWVEIELNSSLLFGSGDAMPSDKAFDIIEKVANILKPFANPVHVEGFTDNLPIR 181 Query: 279 NIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 NW LS RA S ++L GV+ R++ + G+ ++ +D + NRR+ Sbjct: 182 TAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTAEGRARNRRVV 240 Query: 336 ILV 338 +++ Sbjct: 241 LVI 243 >gi|91204077|emb|CAJ71730.1| similar to flagellar motor protein B [Candidatus Kuenenia stuttgartiensis] Length = 215 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 27/129 (20%) Query: 234 TPMFDKSSSIPLPETIV--------------VLQKIGEVLAH--STEVISIRGHTDASPF 277 T + D S SI LP++I+ L+KI +L S E++ I GHTD+ P Sbjct: 85 TKIKDGSVSIVLPDSILFDPGQTKLREQSKATLKKIAGILKTDISNEMVRIEGHTDSDPI 144 Query: 278 ---RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330 ++ NW LS RA S L+ + G+S R+ ++GF + SD A Sbjct: 145 QKQKDKYPSNWELSTARANSVLHYLVDECGISPTRVY-VAGFGQ--FQPISDNKTKAGKA 201 Query: 331 -NRRIDILV 338 NRR++ ++ Sbjct: 202 QNRRVEFVI 210 >gi|68164502|gb|AAY87231.1| predicted flagellar motor protein [uncultured bacterium BAC17H8] Length = 385 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSG-VSED 307 ++++I V + I++ GHTD P F + RDNW L+ RA S Q L +G V Sbjct: 292 IMEEIAGVNEAGSGEITVSGHTDDVPLIFGSQFRDNWDLAAARAASVVQALEDTGKVPAG 351 Query: 308 RISKISGFAHHRLKIASDPM--NSANRRIDI 336 R+ +S F + ++D + NRRI+I Sbjct: 352 RMQAVS-FGESQPVESNDTARGRATNRRIEI 381 >gi|315921071|ref|ZP_07917311.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694946|gb|EFS31781.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 280 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K+ Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 224 >gi|261252277|ref|ZP_05944850.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP 102891] gi|260935668|gb|EEX91657.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP 102891] Length = 313 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 72/330 (21%), Positives = 126/330 (38%), Gaps = 63/330 (19%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 10 PPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 69 Query: 82 G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G I ++ P R ID+ I + ++D+ T Q ++ E++ Sbjct: 70 GTSIIAQEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFHEGESD--------- 111 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 R +D K T + +N ++ + + + L+ L + I Sbjct: 112 ---------RAGGTQRDQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQELETLMESI 162 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L + ++ E I I I R F + S+ P+ ++++I +++ Sbjct: 163 KKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLV 216 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + GHTD + R NW LS RA S Q + K+ GF H Sbjct: 217 KDVPGRIRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQ----------EMEKVRGFNHE 266 Query: 319 RLKIA----SDPMN--------SANRRIDI 336 RL++ ++P+ S NRR++I Sbjct: 267 RLRVRGMADTEPLGPNDTEAQRSRNRRVEI 296 >gi|254973922|ref|ZP_05270394.1| chemotaxis protein [Clostridium difficile QCD-66c26] gi|255091309|ref|ZP_05320787.1| chemotaxis protein [Clostridium difficile CIP 107932] gi|255312966|ref|ZP_05354549.1| chemotaxis protein [Clostridium difficile QCD-76w55] gi|255515725|ref|ZP_05383401.1| chemotaxis protein [Clostridium difficile QCD-97b34] gi|255648819|ref|ZP_05395721.1| chemotaxis protein [Clostridium difficile QCD-37x79] gi|260682038|ref|YP_003213323.1| chemotaxis protein [Clostridium difficile CD196] gi|260685636|ref|YP_003216769.1| chemotaxis protein [Clostridium difficile R20291] gi|306518934|ref|ZP_07405281.1| chemotaxis protein [Clostridium difficile QCD-32g58] gi|260208201|emb|CBA60548.1| chemotaxis protein [Clostridium difficile CD196] gi|260211652|emb|CBE01912.1| chemotaxis protein [Clostridium difficile R20291] Length = 231 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 QDL K++++ N+ V + GIL+ + D + +FD S ++ L Sbjct: 90 QDLKDKVNNS-------NLQNSVTVKDDSRGILLELDD---SILFDSGISELKADSKATL 139 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISK 311 K+ +++ I I GHTD P ++ + NW LS RA S + ++ + R+ Sbjct: 140 NKVYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPRLFS 199 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338 +G ++ ++++ + NRR++IL+ Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228 >gi|16265946|gb|AAL16679.1|AF358690_1 flagellar motor rotation protein [Helicobacter hepaticus] Length = 98 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 8/91 (8%) Query: 247 ETIVVLQKIGEVLAHSTEVISI--RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 + + LQ++ ++ + + I RG+TD +P +R DN+ LS R+ S + L+K+ Sbjct: 11 DVFLYLQRMSAIIKKLPDYVKIDVRGYTDNAPLPVGSRYKDNYELSSARSLSVMKNLIKN 70 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 G+S +RIS SG+ H+ A P +SA R Sbjct: 71 GISPERIS-FSGYGEHQ---AVAPNDSALNR 97 >gi|260776526|ref|ZP_05885421.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] gi|260607749|gb|EEX34014.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] Length = 300 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 72/325 (22%), Positives = 131/325 (40%), Gaps = 67/325 (20%) Query: 36 VYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFDEQN 88 +AD M++LM FF+++ + D K I FG +N + KG I ++ Sbjct: 3 TFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEF 62 Query: 89 PPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 P R ID+ + + IT+ +++ G +++ QR + Q ++ Sbjct: 63 RPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDKGK-------QTGGKSPDT 115 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 T+DS+ + +D E+ + E LS+E L+ L + I L Sbjct: 116 STQDSQNSE-----SDSEQQQSAE-------LSQE----------LETLMESIKKALERE 153 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + ++ E I I I R F + S+ P+ ++++I E++ ++ Sbjct: 154 IEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGIV 207 Query: 267 SIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-- 323 + GHTD + R NW LS RA S Q + K+ F+H RL++ Sbjct: 208 RVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQ----------EMEKVRDFSHQRLQVRGM 257 Query: 324 ----------SDPMNSANRRIDILV 338 ++ S NRR++I + Sbjct: 258 ADTQPLGPNDTEAQRSRNRRVEISI 282 >gi|254694373|ref|ZP_05156201.1| hypothetical protein Babob3T_06882 [Brucella abortus bv. 3 str. Tulya] gi|261214683|ref|ZP_05928964.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260916290|gb|EEX83151.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 343 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343 >gi|160884848|ref|ZP_02065851.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483] gi|156109883|gb|EDO11628.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483] Length = 280 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K+ Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 224 >gi|119775566|ref|YP_928306.1| flagellar motor protein MotB [Shewanella amazonensis SB2B] gi|119768066|gb|ABM00637.1| sodium-driven polar flagellar protein PomB [Shewanella amazonensis SB2B] Length = 312 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 29/156 (18%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KK++ L+ + D ++ E+ I+I I R F S P V++ +G Sbjct: 155 KKMAEQLNEEIVDGAIE---IESLGQQIIIRI---REKGAFGSGSGFLQPRFRPVIRAVG 208 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 E+L +I++ G+TD N + NW LS RA S L+ K+ GF Sbjct: 209 ELLKDVPGIITVSGYTDDMQISNELYSSNWDLSSKRAVSVAHELV----------KVKGF 258 Query: 316 AHHRLKI----ASDPM--------NSANRRIDILVE 339 R+K+ +++P+ + NRR++I +E Sbjct: 259 DSSRMKVVGMGSNNPLVPNESAENRARNRRVEIAIE 294 >gi|254719715|ref|ZP_05181526.1| hypothetical protein Bru83_09258 [Brucella sp. 83/13] gi|265984730|ref|ZP_06097465.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13] gi|306837825|ref|ZP_07470687.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653] gi|306841432|ref|ZP_07474134.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2] gi|264663322|gb|EEZ33583.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13] gi|306288538|gb|EFM59890.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2] gi|306407064|gb|EFM63281.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653] Length = 343 Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQPLD 322 Query: 323 ASDPMN--SANRRIDILVEDR 341 +D + + NRRI++ + +R Sbjct: 323 TADTADARARNRRIELKLTER 343 >gi|153807056|ref|ZP_01959724.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185] gi|149130176|gb|EDM21386.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185] Length = 278 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K+ Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 224 >gi|254225118|ref|ZP_04918732.1| chemotaxis protein PomB [Vibrio cholerae V51] gi|125622505|gb|EAZ50825.1| chemotaxis protein PomB [Vibrio cholerae V51] Length = 318 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 63/330 (19%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L +W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 11 PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70 Query: 82 G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G I ++ P R ID+ I + ++D+ T Q ++Q E++ +Q Sbjct: 71 GTSIIAQEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFQEGESD--RAGGNQ- 118 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 RDS + L E S+ +N ++ A ++++ +A+ I Sbjct: 119 ---------RDSGQ---LTGGQSAETSVQDSQNTQ---SEMQQQQAQAMSEQMETVAESI 163 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 LS + ++ E I I I R F + S+ P+ ++++I E++ Sbjct: 164 KKALSREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELV 217 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + GHTD + R NW LS RA S Q + K+ F H Sbjct: 218 KDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKDFDHL 267 Query: 319 RLKIA----SDPMN--------SANRRIDI 336 RL++ + P+ + NRR++I Sbjct: 268 RLQVRGLADTQPLGPNDTEAQRATNRRVEI 297 >gi|262172094|ref|ZP_06039772.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] gi|261893170|gb|EEY39156.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] Length = 279 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 30/165 (18%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLP 246 Q AK +S + VA++I K + E + I + + Q R F + S+ P Sbjct: 106 QQQAKAMSEQME-TVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQP 164 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + ++++I +++ + + GHTD + R NW LS RA S Q Sbjct: 165 KFRPLVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ-------- 216 Query: 306 EDRISKISGFAHHRLKIA------------SDPMNSANRRIDILV 338 + K+ GF H RL++ ++ + NRR++I + Sbjct: 217 --EMEKVKGFDHQRLQVRGMADTQPIGPNDTEAQRALNRRVEISI 259 >gi|254700373|ref|ZP_05162201.1| hypothetical protein Bsuib55_05884 [Brucella suis bv. 5 str. 513] gi|261750869|ref|ZP_05994578.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513] gi|261740622|gb|EEY28548.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513] Length = 343 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADTRARNRRIELKLTER 343 >gi|312116065|ref|YP_004013661.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311221194|gb|ADP72562.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 339 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 24/118 (20%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIA-RDNWR 286 FD S+ P L K+G L V+ I GHTD P A R NW Sbjct: 224 FFDSGSADLSPLGYAELDKLGTALRDLENKIPRDINWVLRIDGHTDVRPIATAAFRSNWE 283 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 LS RA S + L+ GV +R+ +GF ++ P+ S NRRI++ Sbjct: 284 LSSQRAISVVKYLVSKGVPPNRLVA-AGFGEYQ------PLTSGYTDADLRRNRRIEL 334 >gi|23502572|ref|NP_698699.1| hypothetical protein BR1714 [Brucella suis 1330] gi|161619642|ref|YP_001593529.1| hypothetical protein BCAN_A1752 [Brucella canis ATCC 23365] gi|254703491|ref|ZP_05165319.1| hypothetical protein Bsuib36_06117 [Brucella suis bv. 3 str. 686] gi|260568797|ref|ZP_05839265.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261754122|ref|ZP_05997831.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686] gi|23348573|gb|AAN30614.1| OmpA family protein [Brucella suis 1330] gi|161336453|gb|ABX62758.1| OmpA/MotB domain protein [Brucella canis ATCC 23365] gi|260154181|gb|EEW89263.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743875|gb|EEY31801.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686] Length = 343 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343 >gi|306844705|ref|ZP_07477290.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1] gi|306274877|gb|EFM56647.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1] Length = 343 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343 >gi|237750612|ref|ZP_04581092.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC 43879] gi|229373702|gb|EEO24093.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC 43879] Length = 255 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK ++ P W + YADF+++L+A F+ ++ I+A + KA+ + F Sbjct: 1 MAKKCKCEECPAG-EKWAVPYADFLSLLLALFIALYAISAANTSRVKAVTEAF------- 52 Query: 77 MTASKGIFDEQNPPERS 93 IFD PER+ Sbjct: 53 ----ITIFDATPMPERT 65 >gi|225628282|ref|ZP_03786316.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|254708420|ref|ZP_05170248.1| hypothetical protein BpinM_16075 [Brucella pinnipedialis M163/99/10] gi|254708727|ref|ZP_05170538.1| hypothetical protein BpinB_00411 [Brucella pinnipedialis B2/94] gi|254714572|ref|ZP_05176383.1| hypothetical protein BcetM6_14787 [Brucella ceti M644/93/1] gi|254717469|ref|ZP_05179280.1| hypothetical protein BcetM_13911 [Brucella ceti M13/05/1] gi|256030252|ref|ZP_05443866.1| hypothetical protein BpinM2_06326 [Brucella pinnipedialis M292/94/1] gi|256160427|ref|ZP_05458116.1| hypothetical protein BcetM4_15574 [Brucella ceti M490/95/1] gi|256255633|ref|ZP_05461169.1| hypothetical protein BcetB_15393 [Brucella ceti B1/94] gi|260167927|ref|ZP_05754738.1| hypothetical protein BruF5_06077 [Brucella sp. F5/99] gi|261219302|ref|ZP_05933583.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1] gi|261222836|ref|ZP_05937117.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94] gi|261315919|ref|ZP_05955116.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316219|ref|ZP_05955416.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94] gi|261322363|ref|ZP_05961560.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1] gi|261757366|ref|ZP_06001075.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|265987280|ref|ZP_06099837.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265998795|ref|ZP_06111352.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1] gi|225616128|gb|EEH13176.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|260921420|gb|EEX88073.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94] gi|260924391|gb|EEX90959.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1] gi|261295053|gb|EEX98549.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1] gi|261295442|gb|EEX98938.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94] gi|261304945|gb|EEY08442.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261737350|gb|EEY25346.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|262553484|gb|EEZ09253.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1] gi|264659477|gb|EEZ29738.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 343 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343 >gi|17986607|ref|NP_539241.1| hypothetical protein BMEI0324 [Brucella melitensis bv. 1 str. 16M] gi|62290586|ref|YP_222379.1| hypothetical protein BruAb1_1699 [Brucella abortus bv. 1 str. 9-941] gi|82700502|ref|YP_415076.1| hypothetical protein BAB1_1726 [Brucella melitensis biovar Abortus 2308] gi|163845293|ref|YP_001622948.1| hypothetical protein BSUIS_B1189 [Brucella suis ATCC 23445] gi|189024803|ref|YP_001935571.1| hypothetical protein BAbS19_I16130 [Brucella abortus S19] gi|225853169|ref|YP_002733402.1| hypothetical protein BMEA_A1766 [Brucella melitensis ATCC 23457] gi|237816090|ref|ZP_04595086.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254689881|ref|ZP_05153135.1| hypothetical protein Babob68_06877 [Brucella abortus bv. 6 str. 870] gi|254698031|ref|ZP_05159859.1| hypothetical protein Babob28_10068 [Brucella abortus bv. 2 str. 86/8/59] gi|254730915|ref|ZP_05189493.1| hypothetical protein Babob42_06907 [Brucella abortus bv. 4 str. 292] gi|256045322|ref|ZP_05448216.1| hypothetical protein Bmelb1R_12582 [Brucella melitensis bv. 1 str. Rev.1] gi|256061749|ref|ZP_05451886.1| hypothetical protein Bneo5_15516 [Brucella neotomae 5K33] gi|256114280|ref|ZP_05455025.1| hypothetical protein Bmelb3E_15803 [Brucella melitensis bv. 3 str. Ether] gi|256258134|ref|ZP_05463670.1| hypothetical protein Babob9C_12474 [Brucella abortus bv. 9 str. C68] gi|256263341|ref|ZP_05465873.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370121|ref|YP_003107632.1| flagellar motor protein [Brucella microti CCM 4915] gi|260547172|ref|ZP_05822910.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260565786|ref|ZP_05836269.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260755413|ref|ZP_05867761.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758635|ref|ZP_05870983.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762467|ref|ZP_05874804.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884428|ref|ZP_05896042.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261325753|ref|ZP_05964950.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33] gi|265991747|ref|ZP_06104304.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995585|ref|ZP_06108142.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|297248983|ref|ZP_06932691.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] gi|17982219|gb|AAL51505.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M] gi|62196718|gb|AAX75018.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941] gi|82616603|emb|CAJ11682.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308] gi|163676016|gb|ABY40126.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020375|gb|ACD73097.1| OmpA/MotB domain protein [Brucella abortus S19] gi|225641534|gb|ACO01448.1| OmpA/MotB domain protein [Brucella melitensis ATCC 23457] gi|237788753|gb|EEP62965.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|256000284|gb|ACU48683.1| flagellar motor protein [Brucella microti CCM 4915] gi|260095537|gb|EEW79415.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260151159|gb|EEW86254.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260668953|gb|EEX55893.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672893|gb|EEX59714.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675521|gb|EEX62342.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873956|gb|EEX81025.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261301733|gb|EEY05230.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33] gi|262766869|gb|EEZ12487.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002703|gb|EEZ15106.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093340|gb|EEZ17409.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|297174116|gb|EFH33473.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] gi|326409725|gb|ADZ66790.1| OmpA/MotB domain protein [Brucella melitensis M28] gi|326539433|gb|ADZ87648.1| OmpA/MotB domain protein [Brucella melitensis M5-90] Length = 343 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343 >gi|134094541|ref|YP_001099616.1| flagellar motor protein MotD [Herminiimonas arsenicoxydans] gi|133738444|emb|CAL61489.1| putative flagellar motor protein MotD [Herminiimonas arsenicoxydans] Length = 261 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 8/127 (6%) Query: 185 AMKRKK-RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 A KR+K R+ ++A+ I ++ L+ + V+ + +T R G+ + I + +F + Sbjct: 94 ATKREKARMTNIARDILKAMAPLIREGKVR--VTQTNR-GVSVEI---NASVLFAPGEAR 147 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS 302 ++ L+ + EVL I + GHTD P N + NW LS RA S ++ ++S Sbjct: 148 LSAQSEKALRAVAEVLNKVDNDIQVEGHTDNVPINNAMFPSNWELSAVRASSVVRLFLES 207 Query: 303 GVSEDRI 309 G++E R+ Sbjct: 208 GMNEKRL 214 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/27 (48%), Positives = 22/27 (81%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59 W + YADF+T+L AFF+VM+ I++ ++ Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNE 42 >gi|294850964|ref|ZP_06791640.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] gi|294821607|gb|EFG38603.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] Length = 343 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 17/87 (19%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGEYQ--- 319 Query: 323 ASDPMNSA--------NRRIDILVEDR 341 P+++A NRRI++ + +R Sbjct: 320 ---PLDTANTADARARNRRIELKLTER 343 >gi|225012121|ref|ZP_03702558.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225003676|gb|EEG41649.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 ++L ++K+ L +L K++S L KG+ E + IS+ N +F S Sbjct: 131 ELLMSEQKEALLELKKRLSDALLNFEG----KGLTVEQRNGKVYISM---ENKLLFKSGS 183 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298 + L ++G VLA + + V+ I GHTD PF + NW LS RA + ++ Sbjct: 184 WNVGSQGQEALGQLGTVLAENPDIVVVIEGHTDNVPFSPKEALESNWDLSTKRATAVVKI 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILV 338 L+ +E + + A + P N+A NRRI+I++ Sbjct: 244 LLN---NESVLPQNLTAAGRSEYVPIAPNNNATGRAVNRRIEIIL 285 >gi|15640909|ref|NP_230540.1| flagellar motor protein MotB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588125|ref|ZP_01677872.1| chemotaxis protein PomB [Vibrio cholerae 2740-80] gi|121728326|ref|ZP_01681356.1| chemotaxis protein PomB [Vibrio cholerae V52] gi|147674334|ref|YP_001216371.1| flagellar motor protein MotB [Vibrio cholerae O395] gi|153216012|ref|ZP_01950234.1| flagellar motor protein [Vibrio cholerae 1587] gi|153802297|ref|ZP_01956883.1| chemotaxis protein PomB [Vibrio cholerae MZO-3] gi|153817212|ref|ZP_01969879.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457] gi|153823690|ref|ZP_01976357.1| chemotaxis protein PomB [Vibrio cholerae B33] gi|153827046|ref|ZP_01979713.1| chemotaxis protein PomB [Vibrio cholerae MZO-2] gi|153830558|ref|ZP_01983225.1| chemotaxis protein PomB [Vibrio cholerae 623-39] gi|227081069|ref|YP_002809620.1| chemotaxis protein PomB [Vibrio cholerae M66-2] gi|229505502|ref|ZP_04395012.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286] gi|229510828|ref|ZP_04400307.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33] gi|229513008|ref|ZP_04402474.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21] gi|229517949|ref|ZP_04407393.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9] gi|229523310|ref|ZP_04412717.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80] gi|229525508|ref|ZP_04414913.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis VL426] gi|229530005|ref|ZP_04419395.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)] gi|229608521|ref|YP_002879169.1| flagellar motor protein MotB [Vibrio cholerae MJ-1236] gi|254285566|ref|ZP_04960530.1| chemotaxis protein PomB [Vibrio cholerae AM-19226] gi|254848028|ref|ZP_05237378.1| flagellar motor protein PomB [Vibrio cholerae MO10] gi|262191489|ref|ZP_06049674.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93] gi|297581278|ref|ZP_06943202.1| chemotaxis protein PomB [Vibrio cholerae RC385] gi|298498985|ref|ZP_07008792.1| flagellar motor protein PomB [Vibrio cholerae MAK 757] gi|9655348|gb|AAF94055.1| chemotaxis protein PomB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|51241597|emb|CAH17908.1| flagellar motor protein PomB [Vibrio cholerae] gi|121547616|gb|EAX57715.1| chemotaxis protein PomB [Vibrio cholerae 2740-80] gi|121629381|gb|EAX61811.1| chemotaxis protein PomB [Vibrio cholerae V52] gi|124114525|gb|EAY33345.1| flagellar motor protein [Vibrio cholerae 1587] gi|124122179|gb|EAY40922.1| chemotaxis protein PomB [Vibrio cholerae MZO-3] gi|126512246|gb|EAZ74840.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457] gi|126518793|gb|EAZ76016.1| chemotaxis protein PomB [Vibrio cholerae B33] gi|146316217|gb|ABQ20756.1| chemotaxis protein PomB [Vibrio cholerae O395] gi|148873956|gb|EDL72091.1| chemotaxis protein PomB [Vibrio cholerae 623-39] gi|149739087|gb|EDM53383.1| chemotaxis protein PomB [Vibrio cholerae MZO-2] gi|150424428|gb|EDN16365.1| chemotaxis protein PomB [Vibrio cholerae AM-19226] gi|227008957|gb|ACP05169.1| chemotaxis protein PomB [Vibrio cholerae M66-2] gi|227012713|gb|ACP08923.1| chemotaxis protein PomB [Vibrio cholerae O395] gi|229333779|gb|EEN99265.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)] gi|229339089|gb|EEO04106.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis VL426] gi|229339673|gb|EEO04688.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80] gi|229344664|gb|EEO09638.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9] gi|229349901|gb|EEO14855.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21] gi|229350793|gb|EEO15734.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33] gi|229357725|gb|EEO22642.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286] gi|229371176|gb|ACQ61599.1| Flagellar motor rotation protein MotB [Vibrio cholerae MJ-1236] gi|254843733|gb|EET22147.1| flagellar motor protein PomB [Vibrio cholerae MO10] gi|262032637|gb|EEY51190.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93] gi|297534594|gb|EFH73431.1| chemotaxis protein PomB [Vibrio cholerae RC385] gi|297543318|gb|EFH79368.1| flagellar motor protein PomB [Vibrio cholerae MAK 757] Length = 318 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 75/330 (22%), Positives = 132/330 (40%), Gaps = 63/330 (19%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SK 81 P L +W +AD M++LM FF+++ + D K I FG +N + K Sbjct: 11 PPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPK 70 Query: 82 G--IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G I ++ P R ID+ I + ++D+ T Q ++Q E++ +Q Sbjct: 71 GTSIIAQEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFQEGESD--RAGGNQ- 118 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 RDS + L E S+ +N ++ A ++++ +A+ I Sbjct: 119 ---------RDSGQ---LTGGQSAETSVQDNQNTQS---EMQQQQAQAMSEQMETVAESI 163 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 LS + ++ E I I I R F + S+ P+ ++++I E++ Sbjct: 164 KKALSREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELV 217 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + GHTD + R NW LS RA S Q + K+ F H Sbjct: 218 KDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKDFDHL 267 Query: 319 RLKIA----SDPMN--------SANRRIDI 336 RL++ + P+ + NRR++I Sbjct: 268 RLQVRGLADTQPLGPNDTEAQRATNRRVEI 297 >gi|29348538|ref|NP_812041.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron VPI-5482] gi|253569097|ref|ZP_04846507.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29340443|gb|AAO78235.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron VPI-5482] gi|251841116|gb|EES69197.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 280 Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223 >gi|298386938|ref|ZP_06996492.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14] gi|298260088|gb|EFI02958.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14] Length = 280 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K Sbjct: 171 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223 >gi|229163499|ref|ZP_04291450.1| OmpA/MotB domain protein [Bacillus cereus R309803] gi|228620068|gb|EEK76943.1| OmpA/MotB domain protein [Bacillus cereus R309803] Length = 233 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G+ ++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 106 TEKGLKVTILE---NVLFDSGKADVKLESLNIAKEMSNLLVSTSPREITVSGHTDNVPIA 162 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 N NW LS RA + QVL+++ + ++ S + G+ +R +D + NRR+ Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPNDTQEGKAKNRRV 221 Query: 335 DILV 338 ++ + Sbjct: 222 EVFI 225 >gi|293369282|ref|ZP_06615869.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] gi|292635612|gb|EFF54117.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] Length = 256 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS 302 L K+ EVL T++ + I GHTD P + +DNW LS+ RA S ++L+K+ Sbjct: 147 ALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKN 200 >gi|251772419|gb|EES52986.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum ferrodiazotrophum] Length = 285 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + I VL+ I +L+ + I + GHTD P ++NW LS RA + L+ + Sbjct: 133 QAIPVLKNIAALLSKTKRDIRVEGHTDNVPIHGRYKNNWALSSMRAVNVLTTLIALAPID 192 Query: 307 DRISKISGFAHHRLKIASDPMNSA-----NRRIDILV 338 + +G+ +R + P SA NRR++I+V Sbjct: 193 PSRASAAGYGQYRPLV---PNTSAENRQKNRRVEIVV 226 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 24/37 (64%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 NL W + YADF+T+L FF++M+ I+A + K + Sbjct: 12 NLERWLVSYADFITLLFTFFVMMYAISAVNTGKYKVL 48 >gi|116619472|ref|YP_821628.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222634|gb|ABJ81343.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 267 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 P N W + YADF+T+L AFF+VM+ +D + +A+ Sbjct: 9 PENHERWLVSYADFITLLFAFFVVMFASTQSDKNKARAV 47 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 16/191 (8%) Query: 153 KGKDLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +GK K L + +E EN PP + DLAK + + GL ++ Sbjct: 70 RGKHEAKKAPLSQQTTEERENPTAPPPRPAET-------HPPDLAKSLDTLQKGLDSELK 122 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + G++IS+ R F P ++ +L KI V+ + + GH Sbjct: 123 NGKLQLRLDPRGLIISM---REATFFASGDDAVAPGSLPILTKIAAVVQSLPNPVRLEGH 179 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA--SDPM 327 TD+ P R NW LS R+ + ++L + + R++ ++G+A + ++ Sbjct: 180 TDSRPIHTSRFRSNWELSAARSIAMLELLRDRFQIPASRMA-VAGYAENAPADTNETEEG 238 Query: 328 NSANRRIDILV 338 + NRR+D+++ Sbjct: 239 RAHNRRVDLVL 249 >gi|309388829|gb|ADO76709.1| OmpA/MotB domain protein [Halanaerobium praevalens DSM 2228] Length = 282 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 9/156 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + +Q + K+I + + +N+ V E R G++IS+ + +++ + + Sbjct: 89 ENIQQVMKQIDNYIEN---NNLSDKVNVENKRKGLVISLTGEI---LYELGKADIREQGK 142 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL KI E+L I I GHTD P R NW LS RA + + L++ + Sbjct: 143 EVLTKISEILKEIPNDIMIEGHTDDLPIRTAEFPSNWELSTARAVNVIKYLIEEKDFDPA 202 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 +G++ +R ++ + NRR++++V + Q Sbjct: 203 RLSAAGYSEYRPVATNNSTEGRAENRRVEVVVLNSQ 238 >gi|51246518|ref|YP_066402.1| flagellar motor protein (MotB) [Desulfotalea psychrophila LSv54] gi|50877555|emb|CAG37395.1| related to flagellar motor protein (MotB) [Desulfotalea psychrophila LSv54] Length = 249 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293 +F + S P + ++L+ I +++ + I GH+D P NIA NW LS RA Sbjct: 132 LFARGQSEISPRSYMLLRNIADIIRPLPVNVRIEGHSDDIPLGINNIA--NWNLSTSRAV 189 Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 SA + + +S DR+S I H + + N A NRR+D ++ Sbjct: 190 SALRFFYRGNLISLDRLSAIGYGDMHPIAPNTTEENRAKNRRVDFVL 236 >gi|89093474|ref|ZP_01166422.1| flagellar motor protein [Oceanospirillum sp. MED92] gi|89082164|gb|EAR61388.1| flagellar motor protein [Oceanospirillum sp. MED92] Length = 313 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS- 294 FD S+ E+I VL KI +VL +SI GH+D P+ NW LS+ RA + Sbjct: 176 FDSGSAELKFESIPVLAKIRDVLLDVKGNVSIEGHSDNIPYAGRRFESNWDLSVARALAV 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 A+++ + + R K+ G A + + +D + NRR++I+V Sbjct: 236 AHELFGDPRIDQSRF-KVLGMADTKPLVPNDTRANRVKNRRVEIIV 280 >gi|157149164|ref|YP_001456483.1| putative outer membrane lipoprotein [Citrobacter koseri ATCC BAA-895] gi|157086369|gb|ABV16047.1| hypothetical protein CKO_05004 [Citrobacter koseri ATCC BAA-895] Length = 220 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR+G I I++ N FD SS+ P L + VL ++ +++ G Sbjct: 92 MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYNKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD++ +++ N RLS RA S L+ GV+ +RI + SG IAS+ Sbjct: 151 YTDSTGGQDL---NMRLSQQRADSVASALITQGVAANRI-RTSGMGPAN-PIASNSTAEG 205 Query: 328 NSANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 206 KAQNRRVEITLSPLQ 220 >gi|194288765|ref|YP_002004672.1| replication/virulence associated protein; outer membrane protein, ompa family membrane protein [Cupriavidus taiwanensis LMG 19424] gi|193222600|emb|CAQ68603.1| replication/virulence associated protein; putative outer membrane protein, OmpA family membrane protein [Cupriavidus taiwanensis LMG 19424] Length = 425 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ L+ D I +GV+ + TR+ I R MF + + + + +L K+ + Sbjct: 288 LAELLRDEIARGVVSVQEDATRSAITF-----RGDDMFGRGRADVSEKILPLLDKVAAEV 342 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + T +++ GHTD P + N LS +RA + + L GV+++R+ I Sbjct: 343 SKVTGKVTVIGHTDNVPIKTAKYPSNQALSEERAATVAEYLASKGVAKNRLEAIGKGDSQ 402 Query: 319 RLKIASDPMNSA-NRRIDILV 338 L P+ A NRR++I+V Sbjct: 403 PLADNKAPVGRARNRRVEIVV 423 >gi|307944516|ref|ZP_07659856.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4] gi|307772265|gb|EFO31486.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4] Length = 344 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321 V+ + GHTDA P R +NW LS RA S + L+ G+ R+ +GF + L+ Sbjct: 265 VLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRYLVDQGIDPKRLVA-AGFGEFQPLE 323 Query: 322 IASDPMNSA-NRRIDILVEDR 341 P A NRRI++ + +R Sbjct: 324 EGDTPEALAKNRRIELKLTER 344 >gi|237741116|ref|ZP_04571597.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|229430648|gb|EEO40860.1| outer membrane protein [Fusobacterium sp. 4_1_13] Length = 144 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L+ I E + + I+I+GHTD+ I + N Sbjct: 20 VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIQGHTDS-----IGSNAYN 72 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G++EDRI I + IA++ NRR++ + R Sbjct: 73 FKLSRRRAESVKAKLLEFGLAEDRIVGIEAMGEEQ-PIATNETKEGRAQNRRVEFKLVQR 131 Query: 342 Q 342 + Sbjct: 132 E 132 >gi|103487468|ref|YP_617029.1| ABC transporter related [Sphingopyxis alaskensis RB2256] gi|98977545|gb|ABF53696.1| ABC transporter related [Sphingopyxis alaskensis RB2256] Length = 597 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 D P+ + IV A + + F+ V W+ T D ++A++ +NL+ + G Sbjct: 70 DVAPHFRLFYAIVVALALATALRFYFVSWLGERTVADIRQAVQ-------RNLLRLAPGF 122 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 F+E P E +S+ D +I E + +V + + Sbjct: 123 FEENRPSEIASRMTADTAIIEQVVGTTVSVAL 154 >gi|144898366|emb|CAM75230.1| flagellar motor protein MotB [Magnetospirillum gryphiswaldense MSR-1] Length = 319 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 35/185 (18%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILIS---IIDQ 231 L++++K ++ DL K+++ L+G V + ++ VL E R GI I + Q Sbjct: 143 LSVEQKAQIADLGKRLNVALAGKVEELQRYRSEFFGKLRKVLGE--RQGIRIEGDRFVFQ 200 Query: 232 RNTPMFDKSSS----------IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 + +FD +S+ L +T++ L K ++ V+ + GHTD P ++ Sbjct: 201 -SELLFDSASADLGVSGEQQVRQLAKTLIDLSK--QIPKEVNWVLRVDGHTDKRPIKS-G 256 Query: 282 R--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDI 336 R NW LS RA S + L+ +GV DR++ +GF L + S+ + NRRI+I Sbjct: 257 RFPSNWELSTARAISVIRTLIDAGVPADRLAA-AGFGEF-LPLDNSDSEAALAKNRRIEI 314 Query: 337 LVEDR 341 + R Sbjct: 315 RFDQR 319 >gi|71280429|ref|YP_268267.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H] gi|71146169|gb|AAZ26642.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H] Length = 329 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-------RNTPMFDKSSSIPLPETIV 250 K+ S LS L + + L+E +G ID + +F SS Sbjct: 114 KVGSNLSSLEKE--LHTALYELVESGFAQLQIDGDWLEIELNSGLLFPSGSSSATLSAEA 171 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L I +V+ ++ I +RG+TD N I NW LS+ RA + +VL K G++ R+ Sbjct: 172 ILTVIYDVIGQASNFIRVRGYTDNQVINNEIYSSNWELSVFRATAILRVLEKLGLNPARM 231 Query: 310 SKISGFAHH 318 + I G+ + Sbjct: 232 A-IEGYGQY 239 >gi|162453404|ref|YP_001615771.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161163986|emb|CAN95291.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 263 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 24/145 (16%) Query: 209 DNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266 + +VK G+ + R ++IS+ +FD + +L+KI +V+ ++ Sbjct: 112 EELVKLGLEVQVRRNRMVISLP---GDVLFDSGKDTLSKDGQQILKKISDVIRGDKSLVD 168 Query: 267 ---SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321 + GHTD+ P+++ +DNW LSL RA + L+ K G R +GFA Sbjct: 169 RDYQVAGHTDSQPYKSGPFQDNWGLSLMRARAVLLFLIGKEGQLPTRHWSAAGFAD---- 224 Query: 322 IASDPMNS--------ANRRIDILV 338 +DP+ S NRR D++V Sbjct: 225 --TDPIASNNTPAGKQKNRRCDLIV 247 >gi|117619885|ref|YP_856319.1| flagellar motor protein MotB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561292|gb|ABK38240.1| chemotaxis protein MotB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 291 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFNPFGK 74 + KKK A + P N W + YADFMT+L A F+V++ A +T+ I+ + GK Sbjct: 1 MAKKKKA--EAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLGK 58 Query: 75 -NLMTASKG 82 L++ + G Sbjct: 59 IGLISPAAG 67 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293 +F S+ P+ I ++ KI +LA + + GHTD S P + R NW LS+ R+ Sbjct: 171 LFPADSAFLQPQFIPLVNKISGILADIPGKVVVTGHTDNSQAPV-ELYRSNWELSVLRSA 229 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDI 336 S L+ + + G A + + +D P + ANRR++I Sbjct: 230 SIVHTLLTNPKLDATRVIAQGVADAQPRYPNDTPEHRQANRRVEI 274 >gi|218887954|ref|YP_002437275.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758908|gb|ACL09807.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 248 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292 +F+ S E +LQ + ++ H + I++RG TD+SP + R DNW LS RA Sbjct: 132 LFEPGSDTITAEGRKLLQHMYDLFVRHPDQDINVRGFTDSSPTPSGGRFRDNWDLSSSRA 191 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVE 339 + + L+ G++ RI+ + L + N A NRR++ ++E Sbjct: 192 INVLRTLLDMGIAPHRITATGLADMNPLFPNTTEENRARNRRVEFVLE 239 >gi|115373102|ref|ZP_01460404.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|310824354|ref|YP_003956712.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1] gi|115369858|gb|EAU68791.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|309397426|gb|ADO74885.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 14/117 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTD------ASPFRNIARDNWRLS 288 +F S+ E L KI + L +I + GHTD PF + NW LS Sbjct: 160 LFASGSTRVGKEGQEALAKIADALKSVQGRIIRVEGHTDDVPTDKNGPFPS----NWELS 215 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 L RA + + L +GV +S +G+ ++ A+D S NRRI+I++ + G Sbjct: 216 LARAMAVVRALQDAGVDPTVLS-AAGYGQYQPIAANDSAENRSLNRRIEIVLAAKAG 271 >gi|149375611|ref|ZP_01893380.1| Flagellar motor protein [Marinobacter algicola DG893] gi|149360013|gb|EDM48468.1| Flagellar motor protein [Marinobacter algicola DG893] Length = 277 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS-AYQVLMKSG 303 P + +++++ EVL+ T + + G+TD P + R NW LS RA S ++++M Sbjct: 162 PGMVPIIERVVEVLSGCTGDVLVAGYTDDRPIASGRYRSNWDLSAARAVSVVHELVMNRQ 221 Query: 304 VSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDILVEDRQ 342 V +R+ +G A + +D P N A NRR++I + + Q Sbjct: 222 VPAERVVA-AGRAETNPLVPNDSPENRAKNRRVEIAIRNPQ 261 >gi|323498631|ref|ZP_08103623.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326] gi|323316329|gb|EGA69348.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326] Length = 314 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 23/118 (19%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLD 290 R F + S+ P+ ++++I E++ +I + GHTD + + R NW LS Sbjct: 189 REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGIIRVSGHTDNQRIESELYRSNWDLSAQ 248 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRIDI 336 RA S Q + K+ GF RL++ ++P+ S NRR++I Sbjct: 249 RAVSVAQ----------EMEKVRGFTPQRLRVRGMADTEPLGPNDTEAQRSRNRRVEI 296 >gi|237740939|ref|ZP_04571420.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|229430983|gb|EEO41195.1| outer membrane protein [Fusobacterium sp. 4_1_13] Length = 147 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L+ I E + + I+I GHTD+ I + N Sbjct: 20 VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 72 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ NRR++ + R Sbjct: 73 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 131 Query: 342 Q 342 + Sbjct: 132 E 132 >gi|28869391|ref|NP_792010.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213968194|ref|ZP_03396339.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|301383801|ref|ZP_07232219.1| ompA family protein [Pseudomonas syringae pv. tomato Max13] gi|302060757|ref|ZP_07252298.1| ompA family protein [Pseudomonas syringae pv. tomato K40] gi|302131856|ref|ZP_07257846.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852632|gb|AAO55705.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213927174|gb|EEB60724.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|331018607|gb|EGH98663.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 271 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 19/175 (10%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ +T R G+++++ D Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQTDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R DN LS DR Sbjct: 158 --VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRE---DNLTLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVEDRQG 343 A + VLM GV + RI ++ G+ + AS+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDDKRI-QVEGYGQQ-FPVDANASERGRAQNRRVEIVFSDEKG 265 >gi|254228178|ref|ZP_04921607.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262394011|ref|YP_003285865.1| chemotaxis protein MotB-like protein [Vibrio sp. Ex25] gi|151939251|gb|EDN58080.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262337605|gb|ACY51400.1| chemotaxis protein MotB-related protein [Vibrio sp. Ex25] Length = 244 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 34/164 (20%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256 L NI+ V E + +++ I D +S SSIP TI ++ IG Sbjct: 64 LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIG 123 Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300 VL HS + + I GHTD+ + NW LS DRA S + V Sbjct: 124 VVL-HSAIQKKDRFQYLDTVFIEGHTDSDSIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182 Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336 K G E+ ++ +SG+A R L+ ++ S NRRIDI Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKSQNRRIDI 226 >gi|153832075|ref|ZP_01984742.1| flagellar motor protein [Vibrio harveyi HY01] gi|148871690|gb|EDL70531.1| flagellar motor protein [Vibrio harveyi HY01] Length = 430 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +K ++ D+A+++S L A I KG V + + ISI Q +F+ S+ Sbjct: 278 VKTDSQVTDIAERVSMYL----ATEISKGLVTVDALPDRVRISIKAQ---DLFESGSAEV 330 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSG 303 + V+ K+ L + I + GHTD P F + NW LSL RA + + L+ + Sbjct: 331 VEYIQPVISKLARTLEATEGKILVAGHTDDKPIFTSKYPSNWHLSLARATAMSEQLIANS 390 Query: 304 VSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336 E R+ + G A ++ SD + NRRI+I Sbjct: 391 ALEGRVLPEGLGDARPLVENTSDENRALNRRIEI 424 >gi|291615624|ref|YP_003518366.1| YiaD [Pantoea ananatis LMG 20103] gi|291150654|gb|ADD75238.1| YiaD [Pantoea ananatis LMG 20103] Length = 237 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 +KG TR G I +++ N FD SSS P L + VL + +++ G Sbjct: 109 MKGTGVSVTRQGDNI-VLNMPNNVTFDSSSSSLKPAGANTLTGVAMVLKEYPKTAVNVVG 167 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 HTD++ R + N RLS RA S L+ GV+ +R+ ++ +G +++ + Sbjct: 168 HTDSTGSRAL---NMRLSQQRAESVASALIVQGVAGNRLHTQGAGPDSPVATNSTEAGKA 224 Query: 330 ANRRIDI 336 NRR++I Sbjct: 225 QNRRVEI 231 >gi|56698003|ref|YP_168374.1| hypothetical protein SPO3171 [Ruegeria pomeroyi DSS-3] gi|56679740|gb|AAV96406.1| OmpA domain protein [Ruegeria pomeroyi DSS-3] Length = 766 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 26/120 (21%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIAR--DNW 285 +FD S+ PE + K+ +L VI + GHTD P + DNW Sbjct: 649 LFDPGSADLSPEGQFEIAKVARILRAIAADIPPEINWVIRVDGHTDNVPLLGTGKYADNW 708 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 LS RA S + +++S G+ DR+S +GF ++ P+N A NRRI++ Sbjct: 709 ELSQGRALSVVRYMVESLGLPPDRLSA-NGFGEYQ------PVNPADTAEARAQNRRIEL 761 >gi|302187430|ref|ZP_07264103.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 271 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 17/174 (9%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N +LS DR Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 A + VLM GV E RI + G+ A S+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGVDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265 >gi|160880837|ref|YP_001559805.1| OmpA/MotB domain-containing protein [Clostridium phytofermentans ISDg] gi|160429503|gb|ABX43066.1| OmpA/MotB domain protein [Clostridium phytofermentans ISDg] Length = 275 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISI 268 N+ K + ET +TG +I+ + ++D + E + + K+G++L + IS+ Sbjct: 136 NLDKYLDIETDKTGGQYVLINISGSLLYDSGKAQLKSEALPIFSKVGDILKTYKGYRISV 195 Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI-ASD 325 GHTD P I R N LS RA +A + L+ G+ I I + + +S+ Sbjct: 196 IGHTDNVPVTSGIYRSNKELSSARAINAAEYLIDVKGIDPSNIEWIGRGEYDPIADNSSE 255 Query: 326 PMNSANRRIDILV 338 S NRRI+I + Sbjct: 256 AGRSKNRRIEIRI 268 >gi|121533623|ref|ZP_01665450.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] gi|121307614|gb|EAX48529.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] Length = 262 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 9/137 (6%) Query: 207 VADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +A+N + G + T G++I I ++T +F + PE++ + +I ++A + Sbjct: 119 IAENNLAGDIQTALTDDGLMIRI---KDTALFASGRAELKPESLRLGTEIARMIAPLPQR 175 Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA 323 + + GHTD P NW LS RA + + ++ ++ + +RIS +SG+ +R + Sbjct: 176 VIVAGHTDNMPINTPEFPSNWDLSTVRALNFMKYMLSQAEIKPERIS-VSGYGEYRPVAS 234 Query: 324 SDPMN--SANRRIDILV 338 +D + NRR+++L+ Sbjct: 235 NDTEEGRAKNRRVEVLI 251 >gi|323490130|ref|ZP_08095350.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2] gi|323396178|gb|EGA89004.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2] Length = 256 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W + YAD +T+L+A F+V++ + D AI + FN + + G+ DEQ P E Sbjct: 16 AWLLPYADVLTLLLALFIVLFASSQVDAKKFNAIAESFN----SELQGGSGVLDEQAPVE 71 >gi|325981887|ref|YP_004294289.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531406|gb|ADZ26127.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 264 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 16 IIKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 +I ++ I+++P N W + Y+DF+T+L AFF+VM+ +++ +D + + Sbjct: 1 MINRRKKINESPLENQERWLVSYSDFITLLFAFFVVMYAVSSVNDGKYRVL 51 >gi|238927470|ref|ZP_04659230.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531] gi|238884752|gb|EEQ48390.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531] Length = 308 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 MK + L + KK+ + +N+ V E T G+++ + ++ +F S++ Sbjct: 92 MKENQDLSEAQKKLDQYIKD---NNLQDQVSTELTEEGLMVRLKEKA---LFSSGSAVLQ 145 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM--KS 302 + ++ I VLA E ++I GHTD P NW LS RA S + +M + Sbjct: 146 GDAEKIVPVIAGVLASLPERVTISGHTDNVPISTAQYPSNWELSSARAVSLMRGVMAVQP 205 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 ++ R S + G++ +R IAS+ NRR+++ + Sbjct: 206 SLNPARFSAL-GYSEYR-PIASNDTEEGRAQNRRVEVFI 242 >gi|157889021|dbj|BAF80966.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ + N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGSKTY---NQKLSLERAKAVAKELEKTGV 289 Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335 ++++I +K GF + + + NRR++ Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|299134154|ref|ZP_07027347.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] gi|298590901|gb|EFI51103.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] Length = 338 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 24/118 (20%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286 FD S+ LPE L ++ L A V+ + GHTD P + + NW Sbjct: 223 FFDSGSAALLPEGRNELDQLATALGDLEKKIPAEIPWVLRVDGHTDVRPINSPQFKSNWD 282 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 LS RA S Q L+ GVS R+ +GF + P+++ NRRI++ Sbjct: 283 LSAARAISVVQYLISRGVSPQRLVA-AGFGEFQ------PLDTGTTEEAYKRNRRIEL 333 >gi|332664792|ref|YP_004447580.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333606|gb|AEE50707.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 256 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQR-----NTPMFDKSSSIPLPETI--VVLQKIGEVLAHS 262 N V G+ +G+ D R + PM K+ S L + V Q + ++ Sbjct: 105 NEVNGIFSAYKSSGLTAEERDGRLYLMTSAPMDYKTGSYALSKAQREAVAQLATTLKSNP 164 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHR 319 I + GHTD+ R A +DNW LS R+ + + L+K+GVS +++ + G + Sbjct: 165 KLKILVEGHTDSDKVRGGAAYQDNWELSSKRSLAICRELIKNGVSPAQVATVGRGETMPK 224 Query: 320 LKIASDPMNSANRRIDILVE 339 ++ +ANRR D++ + Sbjct: 225 ADNSTKEGKAANRRSDVVAD 244 >gi|198276042|ref|ZP_03208573.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135] gi|198271671|gb|EDY95941.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135] Length = 280 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL TE+ + I GHTD P +DNW LS+ RA S ++L++ Sbjct: 176 ALGKLAEVLNKQTEIDVCIEGHTDNKPIHTAQFKDNWDLSVIRATSVVRILIE 228 >gi|94263332|ref|ZP_01287147.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456287|gb|EAT06417.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 272 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 35/135 (25%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---------------------AHSTEVISIRGHTDAS 275 F +I E + L K+G+VL A E + I GHTD Sbjct: 116 FPSGQAILPEEELAKLAKVGDVLVDTLPCYTADPPAYLNCSPEHAGKLESVFIEGHTDNV 175 Query: 276 PFRNIAR---DNWRLSLDRAYSAYQVLM---------KSGVSEDRISKISGFAHHRL--K 321 P R+ +R DNW LS RA AY+ ++ + + I +SG+ R + Sbjct: 176 PLRDGSRKFQDNWDLSAQRAIFAYRSMVIGEQPLLGQLTNTAGFPIFSVSGYGEGRPRNR 235 Query: 322 IASDPMNSANRRIDI 336 + ++ANRRID+ Sbjct: 236 YEAPTADAANRRIDL 250 >gi|239905381|ref|YP_002952120.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239795245|dbj|BAH74234.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 234 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94 + YADF+T +MAFFL++W++ + TK+ + F D+ P + + Sbjct: 1 MAYADFVTAMMAFFLLLWLVVSLKPQTKQELSLVFQ--------------DKNVPSKEKT 46 Query: 95 QN--KIDLSIDEHITKNSVDLKIGSTNQKK 122 QN K+ I K S + K+ N+ K Sbjct: 47 QNLEKVPTFISPDAIKGSPEFKLSQENKLK 76 >gi|104782795|ref|YP_609293.1| flagellar motor protein MotD [Pseudomonas entomophila L48] gi|95111782|emb|CAK16506.1| flagellar motor protein MotB [Pseudomonas entomophila L48] Length = 285 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K I Q A G+F N PER Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKQISQ-----------ALIGVF---NDPER 61 Query: 93 S 93 S Sbjct: 62 S 62 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T R L I+ ++ +F + ++P +++K+ ++L + + G TD P R Sbjct: 122 TVRGNELWVEIELNSSLLFASADAMPSDVAFEIIEKVAKILKPFANPVHVEGFTDNLPIR 181 Query: 279 NIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 NW LS RA S ++L GV+ R++ + G+ ++ +D + + NRR+ Sbjct: 182 TAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTADGRARNRRVV 240 Query: 336 ILV 338 +++ Sbjct: 241 LVI 243 >gi|126697829|ref|YP_001086726.1| chemotaxis protein [Clostridium difficile 630] gi|255099425|ref|ZP_05328402.1| chemotaxis protein [Clostridium difficile QCD-63q42] gi|115249266|emb|CAJ67079.1| Flagellar motor rotation protein MotB (Chemotaxis protein MotB) [Clostridium difficile] Length = 231 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 QDL K++++ N+ V + GIL+ + D + +FD S ++ L Sbjct: 90 QDLKDKVNNS-------NLQNSVTVKDDSRGILLELDD---SILFDSGISELKVDSKATL 139 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISK 311 K+ +++ I I GHTD P ++ + NW LS RA S + ++ + R+ Sbjct: 140 NKVYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPRLFS 199 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338 +G ++ ++++ + NRR++IL+ Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228 >gi|114563544|ref|YP_751057.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334837|gb|ABI72219.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 429 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRA 292 T +F ++ P + +L KI L + I I GHTD P F + NW LSL RA Sbjct: 321 TELFASGNTQPRSDFEAILAKIALTLESTDGKILITGHTDDEPIFTSKYPSNWHLSLARA 380 Query: 293 YSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336 S VL S R+ + G + R+ ++ + NRRI+I Sbjct: 381 TSIANVLANSASLSGRLWPEGRGESEPRVVNDNEQNRALNRRIEI 425 >gi|319790576|ref|YP_004152209.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] gi|317115078|gb|ADU97568.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] Length = 251 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 71/135 (52%), Gaps = 10/135 (7%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +++D K V+ E R +++ +++ +F +S+ PE + LQ+I + L + + Sbjct: 113 VISDKRPKAVVKEPGRVKVVL-----KDSVLFGLNSAELKPEAVKELQRIAQTLKENPKT 167 Query: 266 -ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + G+TD + + N +LS +RA + +VL+++GV +RI + + Sbjct: 168 TVVVVGYTDNT---GSLKYNLKLSKERAEAVKKVLVEAGVRPERILVFGCGPKNPIAPND 224 Query: 325 DPMNSA-NRRIDILV 338 P + A NRR++IL+ Sbjct: 225 TPQHRALNRRVEILI 239 >gi|269137375|ref|YP_003294075.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202] gi|267983035|gb|ACY82864.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202] gi|304557476|gb|ADM40140.1| Outer membrane protein [Edwardsiella tarda FL6-60] Length = 219 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 ++G TR G I +++ N FD +SS P L + VL + +++ G Sbjct: 92 MRGTGVSVTRQGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYQKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 +TD++ R++ N RLS RA S L+ GVS RI I + + S A Sbjct: 151 YTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRIRTIGMGPANPIATNSTAAGKA 207 Query: 331 -NRRIDI 336 NRR++I Sbjct: 208 QNRRVEI 214 >gi|311746921|ref|ZP_07720706.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1] gi|126578612|gb|EAZ82776.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1] Length = 562 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 9/96 (9%) Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ET VL ++ E L+ ++ V + I GHTD ++ + LSLDRA S L+ GV+ Sbjct: 470 ETEAVLSELAEFLSENSSVKLRINGHTDGGGDPSLNKG---LSLDRARSVRDYLVDHGVT 526 Query: 306 EDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 + + +I+G+ R IAS+ S NRR+++ V Sbjct: 527 FENL-RIAGWGGTR-PIASNATESGRSKNRRVELEV 560 >gi|229141242|ref|ZP_04269781.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] gi|229198660|ref|ZP_04325361.1| OmpA/MotB domain protein [Bacillus cereus m1293] gi|228584819|gb|EEK42936.1| OmpA/MotB domain protein [Bacillus cereus m1293] gi|228642283|gb|EEK98575.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] Length = 233 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 11/125 (8%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G+ ++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 106 TEKGLKVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTDNVPIA 162 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN--SANRR 333 N NW LS RA + QVL+++ E + K S G+ +R +D + NRR Sbjct: 163 NAQFASNWELSTQRAVNFMQVLLQN--KELQPGKFSAVGYGEYRSIAPNDTQEGKAKNRR 220 Query: 334 IDILV 338 +++ + Sbjct: 221 VEVFI 225 >gi|228964710|ref|ZP_04125817.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228794960|gb|EEM42459.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 223 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 11/158 (6%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 EKI++ KKR+ +L KK L V +N + V TG+ + I+D +FD Sbjct: 74 EKIIS---KKRMDELYKK----LKAYVDNNGISQVNVYREDTGVSVVIVDNL---IFDTG 123 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + PE ++ ++ I + GHTD+ P N NW LS RA + L Sbjct: 124 DANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHL 183 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ +D+ G+A + + +D + + + +L Sbjct: 184 IEVYNVDDKRLAAVGYADTKPIVPNDSPQNWEKTVALL 221 >gi|222087026|ref|YP_002545561.1| OmpA family protein [Agrobacterium radiobacter K84] gi|221724474|gb|ACM27630.1| OmpA family protein [Agrobacterium radiobacter K84] Length = 321 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD P R DNW LS RA + + L+ GV DR+ +GF + Sbjct: 242 VLRVDGHTDNVPLSGNGRYPDNWALSSARAIAVVKFLIAQGVPADRLVA-AGFGEFQPIA 300 Query: 323 ASDP--MNSANRRIDI 336 D + NRRI++ Sbjct: 301 PGDTPEARATNRRIEL 316 >gi|46578465|ref|YP_009273.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough] gi|120603951|ref|YP_968351.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46447876|gb|AAS94532.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough] gi|120564180|gb|ABM29924.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311232393|gb|ADP85247.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 246 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P ++ +L + +VLA +++ HTDA+ D W LS RA S + ++ G+ Sbjct: 146 PASLRLLDTLTDVLAGLDADVNVSAHTDAT---EGGADPWDLSDRRALSVLEHFLQRGMD 202 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 R S +SG+ R AS +A NRR++ILV+ Sbjct: 203 PARFS-VSGYGPDRPLDASASPEAAQRNRRVEILVK 237 >gi|145298724|ref|YP_001141565.1| flagellar motor protein MotB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851496|gb|ABO89817.1| Flagellar motor component MotB [Aeromonas salmonicida subsp. salmonicida A449] Length = 292 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW-IINATDDDTKKAIEQYFN--- 70 ++ KKK + P N W + YADFMT+L A F+V++ A +T+ I+ + Sbjct: 1 MVAKKKK--PEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGFIESLG 58 Query: 71 -------PFGKNLMTASKGIFDEQNPPERSSQNK 97 P G +M GI + ++ SS +K Sbjct: 59 KIGLISPPAGSPVMQGGTGILEPESRTTPSSPDK 92 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 23/114 (20%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAY 293 +F S+ P+ I ++ KI +LA+ + + GHTD S P + R NW LS+ RA Sbjct: 172 LFPADSAFLQPQFIPLVHKIAGILANIPGKVVVTGHTDNSQAPL-ELYRSNWELSVLRAA 230 Query: 294 SAYQVLM-----------KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 S +++ GV++ + + A HR ANRR++I Sbjct: 231 SIVHIMLTDPKLDATRVIAQGVADAQPRYPNDTAEHR---------QANRRVEI 275 >gi|239905020|ref|YP_002951759.1| hypothetical protein DMR_03820 [Desulfovibrio magneticus RS-1] gi|239794884|dbj|BAH73873.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 424 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 18/163 (11%) Query: 191 RLQDLAKK---ISSTLSGLVADNIVKG------VLFETTRTGILISIIDQRNTPMFDKSS 241 R QDL +K + + LVAD ++G + R + I+ +D+ +F S Sbjct: 68 RAQDLERKTEELQTAYDALVAD--LRGEVDSRQIRVRQFREKLEINFVDKI---LFPSGS 122 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 + P +L ++G VLA + I + GHTD P + + NW LS RA S + L Sbjct: 123 AEISPRGRDILTRVGAVLAKVKDKSIYVVGHTDNVPIHSALFPSNWELSASRAASVIRHL 182 Query: 300 MKS-GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 +S G++ +R + + F A+ NRR+DI+V D Sbjct: 183 SESGGLAPERFTAMGRAFYQPVASNATPEGRQENRRVDIIVAD 225 >gi|238918002|ref|YP_002931516.1| outer membrane lipoprotein [Edwardsiella ictaluri 93-146] gi|238867570|gb|ACR67281.1| inner membrane lipoprotein YiaD [Edwardsiella ictaluri 93-146] Length = 219 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 ++G TR G I +++ N FD +SS P L + VL + +++ G Sbjct: 92 MRGTGVSVTRQGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYQKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 +TD++ R++ N RLS RA S L+ GVS RI I + + S A Sbjct: 151 YTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRIRTIGMGPANPIATNSTAAGKA 207 Query: 331 -NRRIDI 336 NRR++I Sbjct: 208 QNRRVEI 214 >gi|325953665|ref|YP_004237325.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323436283|gb|ADX66747.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 218 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ +++ + I ++L A+ T + I G+TD + I N ++S +RA Sbjct: 114 FDINKSVITDNSLIQIDNIAKILKAYPTATLKIGGYTDNTGDAAI---NKKISTNRADEV 170 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + L+ G+S +RIS H L A+D + NRR+DI + Sbjct: 171 AKALVNKGISANRISTEGYGDQHFLCEANDTDLCRAQNRRVDIRI 215 >gi|300855151|ref|YP_003780135.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] gi|300435266|gb|ADK15033.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] Length = 249 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 11/155 (7%) Query: 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K QD +I TL + D V E ++ G+ ISI + +F+ + L Sbjct: 89 KTEQDTMNEIKKTLDAKIKQDGYDDKVKVEISKDGLGISI---QEAILFNSGDAEVLTHI 145 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L I E++ + I I GHTD P N R NW LS RA + ++K+G Sbjct: 146 HPLLISISEMIRNLDNNIRIAGHTDNVPIHNSKFRSNWDLSAMRAINVMNFMVKNG--GI 203 Query: 308 RISKISGFAHHRLKIASDPMN----SANRRIDILV 338 I+K+S A+ + S + + NRR++I + Sbjct: 204 NITKVSIQAYSEYQPKSTNLTKEGRAQNRRVEIFI 238 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +W I YAD +T+L+A F+VM+ I+ D + I Q FN Sbjct: 15 TWLIPYADMLTLLLALFIVMFAISKVDQEKLAKISQQFN 53 >gi|298530631|ref|ZP_07018033.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510005|gb|EFI33909.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 274 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTD------ASPFRNIARD-----NWRLSLDRAYSA 295 E I VL K+ VL + + GHT + ++ + D WRLSLDRA + Sbjct: 136 EGIEVLDKVVPVLKDLEYPVLLAGHTSLVRDEFGAGWQALKDDVIINPTWRLSLDRALNV 195 Query: 296 YQVLMKSGVSEDRISKISGFAHH--RLKIASDPMNSANRRIDILVEDR 341 Y+ +M+ GV + + ++ F R ++ NRR++I+++ R Sbjct: 196 YRYIMEQGVDPEMV-RLEAFGEFQPRYGTRTEANRRQNRRVEIVLDRR 242 >gi|120552993|ref|YP_957344.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120322842|gb|ABM17157.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 277 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS-AYQVLMKSG 303 PE I +++++ VL+ + + + GH+D P + R NW LS RA S +++++ Sbjct: 162 PEMIPIIERVVSVLSACSGDVVVSGHSDDRPISSSQYRSNWDLSAARAVSVVHELVLNRD 221 Query: 304 VSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILV 338 + +R+ +G A R L + P N A NRR++I + Sbjct: 222 IPAERVVA-AGRAETRPLAPNTSPENRAINRRVEIAI 257 >gi|229591826|ref|YP_002873945.1| flagellar motor protein MotD [Pseudomonas fluorescens SBW25] gi|229363692|emb|CAY51066.1| putative chemotaxis protein [Pseudomonas fluorescens SBW25] Length = 297 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K I Q Sbjct: 19 WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISQ 53 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 14/152 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A IS+ L++ N + T R L I+ ++ +F + ++P + + Sbjct: 103 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFASADAMPSDQAFTI 156 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + K+ +L I + G TD P N A+ NW LS RA S ++L GV+ R+ Sbjct: 157 IDKVASILRPFENPIHVEGFTDNFPI-NTAQYPTNWELSSARAASIVRMLAMQGVNPGRL 215 Query: 310 SKISGFAHHRLKIASDPM---NSANRRIDILV 338 + + G+ + +A++ + NRR+ ++V Sbjct: 216 ASV-GYGEFQ-PVANNATVEGRARNRRVVLVV 245 >gi|327187188|dbj|BAK08928.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+K+G +L+ ++ + GHTD+ P N NW LS RA S + L+++ + + Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211 Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +G+ R + + + + NRR+ I++ D Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243 >gi|229520255|ref|ZP_04409681.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM 11079-80] gi|167832518|gb|ACA01828.1| hypothetical protein VPI2_0011c [Vibrio cholerae] gi|229342621|gb|EEO07613.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM 11079-80] Length = 244 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 69/164 (42%), Gaps = 34/164 (20%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS--------SSIPLPETIV-VLQKIG 256 L NI+ V E + +++ I D +S SSIP TI ++ IG Sbjct: 64 LARKNIIYDVRDELAKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIG 123 Query: 257 EVLAHST----------EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------ 300 VL HS + I I GHTD+ + NW LS DRA S + V Sbjct: 124 VVL-HSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKGNWGLSTDRAISVWNVWQNELSLT 182 Query: 301 -KSGVSED----RISKISGFAHHR---LKIASDPMNSANRRIDI 336 K G E+ ++ +SG+A R L ++ S NRRIDI Sbjct: 183 PKLGDLENAYHAKLFSVSGYAATRRANLHESNQQEKSQNRRIDI 226 >gi|34763480|ref|ZP_00144424.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886853|gb|EAA23981.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 157 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L+ I E + + I+I GHTD+ I + N Sbjct: 30 VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ NRR++ + R Sbjct: 83 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141 Query: 342 Q 342 + Sbjct: 142 E 142 >gi|332669204|ref|YP_004452212.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338242|gb|AEE44825.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484] Length = 301 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322 E +S+ GH + P NW LS DRA + L++ G+ RI + GF R + Sbjct: 207 ENVSVEGHANVIPVSGRYPTNWELSADRATQVLRHLVEVDGMPGPRIMAV-GFGDTRPLV 265 Query: 323 ASDPMN--SANRRIDILV 338 A D +ANRR+D+++ Sbjct: 266 AGDSPEALAANRRVDLVI 283 >gi|288553786|ref|YP_003425721.1| flagellar motor protein MotS [Bacillus pseudofirmus OF4] gi|34485061|gb|AAB94398.2| channel protein [Bacillus pseudofirmus OF4] gi|288544946|gb|ADC48829.1| Flagellar motor rotation protein motS [Bacillus pseudofirmus OF4] gi|327187185|dbj|BAK08926.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+K+G +L+ ++ + GHTD+ P N NW LS RA S + L+++ + + Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211 Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +G+ R + + + + NRR+ I++ D Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243 >gi|327187191|dbj|BAK08930.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+K+G +L+ ++ + GHTD+ P N NW LS RA S + L+++ + + Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211 Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +G+ R + + + + NRR+ I++ D Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243 >gi|294012218|ref|YP_003545678.1| OmpA-family protein [Sphingobium japonicum UT26S] gi|292675548|dbj|BAI97066.1| OmpA-family protein [Sphingobium japonicum UT26S] Length = 236 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 13/107 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + PLPE + + + A + G+TD S R N LSL RA + Sbjct: 132 FFDWNMDTPLPEGAGTISTLTQTAAQCGWTRFGVTGYTDTSGSN---RYNDGLSLRRARN 188 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-----DPMNSANRRIDI 336 ++ + GVS D I+ ++G +LKI + +PM NRR++I Sbjct: 189 VASLMSQGGVSADAIT-VTGLGETQLKIETADGVREPM---NRRVEI 231 >gi|327187194|dbj|BAK08932.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+K+G +L+ ++ + GHTD+ P N NW LS RA S + L+++ + + Sbjct: 152 LEKVGTLLSAIPNMVKVEGHTDSRPISNFRYPSNWELSGARASSVIRYLVETNDLDPKRF 211 Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +G+ R + + + + NRR+ I++ D Sbjct: 212 IATGYGDTRPVVPNTTVENLQLNRRVVIVISD 243 >gi|294638308|ref|ZP_06716561.1| OmpA family protein [Edwardsiella tarda ATCC 23685] gi|291088561|gb|EFE21122.1| OmpA family protein [Edwardsiella tarda ATCC 23685] Length = 219 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 ++G TR G I +++ N FD +SS P L + VL + +++ G Sbjct: 92 MRGTGVSVTRQGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYQKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329 +TD++ R++ N RLS RA S L+ GV+ RI I G A+ ++ + Sbjct: 151 YTDSTGSRDL---NMRLSQQRADSVASALITQGVAAGRIRTIGMGPANPIASNSTAAGKA 207 Query: 330 ANRRIDI 336 NRR++I Sbjct: 208 QNRRVEI 214 >gi|292493578|ref|YP_003529017.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291582173|gb|ADE16630.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 279 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 12/154 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ + +++ TL L+ +++V+ R G ++ + +F S+ E + V Sbjct: 113 LKAITEEVRITLQPLIDEDLVR------LRQGQEWLEVEINDRVLFTSGSAKLEAEAVPV 166 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+K+ ++L I + G TD P + NW LS RA S + + GVS R++ Sbjct: 167 LKKLAKILRRFPNPIQVEGFTDNVPISTAVFPSNWELSSARAASVVHLFDRFGVSPARMA 226 Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 I G+ +R +A + NRR+ +++ R Sbjct: 227 AI-GYGQYR-PVADNSTPEGRRRNRRVALVILGR 258 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ +++ ++ + + + Sbjct: 16 WLVSYADFITLLFAFFVVMYAVSSVNEGKYRVLSE 50 >gi|256846250|ref|ZP_05551707.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|256718019|gb|EEU31575.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] Length = 191 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L+ I E + + I+I GHTD+ I + N Sbjct: 64 VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 116 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ NRR++ + R Sbjct: 117 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 175 Query: 342 Q 342 + Sbjct: 176 E 176 >gi|222149694|ref|YP_002550651.1| hypothetical protein Avi_3670 [Agrobacterium vitis S4] gi|221736676|gb|ACM37639.1| flagellar motor protein [Agrobacterium vitis S4] Length = 343 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD R DNW LS RA S + L+ GV DR++ +GF + Sbjct: 264 VLRVDGHTDNVQLSGNGRYPDNWALSAARAVSVVKFLISKGVPADRLAA-AGFGEFQPIA 322 Query: 323 ASDP--MNSANRRIDILVEDR 341 D + NRRI++ + +R Sbjct: 323 PGDTPEARAQNRRIELKLTER 343 >gi|42783685|ref|NP_980932.1| flagellar motor protein MotB [Bacillus cereus ATCC 10987] gi|42739614|gb|AAS43540.1| sodium-driven polar flagellar protein PomB, putative [Bacillus cereus ATCC 10987] Length = 261 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G+ ++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 134 TEKGLKVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTDNVPIA 190 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N NW LS RA + QVL+++ + G+ +R +D + NRR++ Sbjct: 191 NAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAVGYGEYRSIAPNDTQEGKAKNRRVE 250 Query: 336 ILV 338 + + Sbjct: 251 VFI 253 >gi|206977733|ref|ZP_03238624.1| chemotaxis protein MotB [Bacillus cereus H3081.97] gi|217961995|ref|YP_002340565.1| flagellar motor protein MotB [Bacillus cereus AH187] gi|222097978|ref|YP_002532035.1| flagellar motor protein motb [Bacillus cereus Q1] gi|206744034|gb|EDZ55450.1| chemotaxis protein MotB [Bacillus cereus H3081.97] gi|217067135|gb|ACJ81385.1| chemotaxis protein MotB [Bacillus cereus AH187] gi|221242036|gb|ACM14746.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus Q1] gi|324328404|gb|ADY23664.1| flagellar motor protein MotB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 261 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T G+ ++I++ +FD + E++ + +++ +L + S I++ GHTD P Sbjct: 134 TEKGLKVTILE---NVLFDSGKADVKLESLSIAKEMSNLLVSASPREITVSGHTDNVPIA 190 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 N NW LS RA + QVL+++ + G+ +R +D + NRR++ Sbjct: 191 NAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAVGYGEYRSIAPNDTQEGKAKNRRVE 250 Query: 336 ILV 338 + + Sbjct: 251 VFI 253 >gi|256846747|ref|ZP_05552203.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|256717967|gb|EEU31524.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] Length = 190 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L+ I E + + I+I GHTD+ I + N Sbjct: 63 VLDERSLNFDFDKSNV--KPQYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 115 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ + NRR++ + R Sbjct: 116 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 174 Query: 342 Q 342 + Sbjct: 175 E 175 >gi|261212057|ref|ZP_05926343.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341] gi|260838665|gb|EEX65316.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341] Length = 304 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 63/324 (19%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFG-KNLMTA---SKG--IFD 85 W +AD M++LM FF+++ + D K I FG +N + KG I Sbjct: 2 WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++ P R ID+ I + ++D+ T Q ++Q E++ Sbjct: 62 QEFRPGRPEPTPIDV-----IMQQTIDI----TQQTLEFQEGESD------------RAG 100 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 RDS + L E S+ + +N ++ A ++++ +A+ I LS Sbjct: 101 GNQRDSGQ---LTGGQSAETSVQENQNTQ---SEMQQQQAQAMSEQMETVAESIKKALSR 154 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 + ++ E I I I R F + S+ P+ ++++I +++ Sbjct: 155 EIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPGK 208 Query: 266 ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323 + + GHTD + R NW LS RA S Q + K+ GF H RL++ Sbjct: 209 VRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKGFDHQRLQVRG 258 Query: 324 ---SDPMN--------SANRRIDI 336 + P+ + NRR++I Sbjct: 259 MADTQPLGPNDTEAQRTINRRVEI 282 >gi|332703401|ref|ZP_08423489.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553550|gb|EGJ50594.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 249 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 12/105 (11%) Query: 247 ETIVVLQKIGEVL-AHSTEVISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 + + VL+ + ++L H+ + I+IRG TD P N +DNW +S R+ + +VLM G Sbjct: 148 QGVAVLRDLKDLLIKHADQRINIRGFTDDVRPSGNSRFKDNWEISAMRSVNVLRVLMSLG 207 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVEDRQG 343 + R++ +G A P NS NRRI+I +E R G Sbjct: 208 MEPTRLTA-TGLADLEPLF---PNNSTENRARNRRIEITLEKRVG 248 >gi|118588924|ref|ZP_01546331.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614] gi|118438253|gb|EAV44887.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614] Length = 234 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 LA +T VI GHTD + N RLS DRA + Q L+ GVS DR+ ++ + Sbjct: 158 LAKATFVI--EGHTDGIGSTSY---NQRLSEDRAQAVTQFLVNLGVSRDRLKTVA-YGET 211 Query: 319 RLKIASDPMNSANRRID 335 R K+A D + ANRR++ Sbjct: 212 RPKVA-DVNDPANRRVE 227 >gi|114777571|ref|ZP_01452552.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] gi|114552042|gb|EAU54559.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] Length = 258 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 266 ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 I I GHTDA+P +N NW LS RA + + L + GV R+ H +K Sbjct: 157 IQIEGHTDATPTKNSDYPSNWELSAARAMAVFHELAEQGVPRGRMIAAGMGDQHPIKGHP 216 Query: 325 DPMNSANRRIDILVEDR 341 + +RR+DI ++ R Sbjct: 217 E----LSRRVDITLKFR 229 >gi|146278244|ref|YP_001168403.1| hypothetical protein Rsph17025_2208 [Rhodobacter sphaeroides ATCC 17025] gi|145556485|gb|ABP71098.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 525 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%) Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-- 319 +I + GHTD P RDNW LS RA S + + ++ G R++ +GF +R Sbjct: 445 IIRVDGHTDDVPLSGFGAFRDNWELSSARALSVVRYMQQTLGFPPSRLAA-TGFGEYRPV 503 Query: 320 LKIASDPMNSANRRIDILVEDR 341 ++ +S + NRRI++ + +R Sbjct: 504 VEGSSPEARAQNRRIELKLTER 525 >gi|34763583|ref|ZP_00144517.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886747|gb|EAA23886.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 157 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L+ I E + + I+I GHTD+ I + N Sbjct: 30 VLDERSLHFDFDKSNV--KPQYYDLLKNIQEFVEQNNYEITIVGHTDS-----IGSNAYN 82 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ NRR++ + R Sbjct: 83 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141 Query: 342 Q 342 + Sbjct: 142 E 142 >gi|312962248|ref|ZP_07776740.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gi|311283585|gb|EFQ62174.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 295 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K I Q Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQ 51 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A IS+ L++ N + T R L I+ ++ +F + ++P + + Sbjct: 101 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFASADAMPSDQAFTI 154 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ +L + + G TD P NW LS RA S ++L GVS R++ Sbjct: 155 IDKVAAILKPFENPVHVEGFTDNVPISTAQYPTNWELSSARAASIVRMLAMQGVSPGRLA 214 Query: 311 KISGFAHHRLKIASDPM---NSANRRIDILV 338 + G+ + +A++ + NRR+ ++V Sbjct: 215 SV-GYGEFQ-PVANNATVEGRARNRRVVLVV 243 >gi|224417757|ref|ZP_03655763.1| motility protein MotB [Helicobacter canadensis MIT 98-5491] gi|253827100|ref|ZP_04869985.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491] gi|313141298|ref|ZP_07803491.1| motb protein [Helicobacter canadensis MIT 98-5491] gi|253510506|gb|EES89165.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491] gi|313130329|gb|EFR47946.1| motb protein [Helicobacter canadensis MIT 98-5491] Length = 256 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%) Query: 263 TEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 T +I GHTD P R I DN LS+ R + ++++ G+S++R+ + G Sbjct: 160 TALIKAIGHTDNVPMRENPIFADNLELSIARGVNVAELIITEGISKERV--LGGGEGEFS 217 Query: 321 KIASD---PMNSANRRIDILV 338 IAS+ + + NRR+D+ + Sbjct: 218 PIASNKIPELRAKNRRVDLYI 238 >gi|117621021|ref|YP_857806.1| flagellar motor protein MotB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562428|gb|ABK39376.1| sodium-driven polar flagellar protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LAK ++ + + D ++ E I+I I R F S+ P+ V++K Sbjct: 142 LAKALADQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPVVRK 195 Query: 255 IGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312 + +L I+I GHTD A+ + + NW LS RA + A+Q++ G R+ + Sbjct: 196 VAALLKDVPGEITISGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRLV-V 254 Query: 313 SGFAHHRLKIA-SDPMN-SANRRIDI 336 G A + + + P N NRR++I Sbjct: 255 QGMADSQPLVPNTSPENRRMNRRVEI 280 >gi|66045239|ref|YP_235080.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63255946|gb|AAY37042.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 271 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 17/174 (9%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N +LS DR Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLKLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 A + VLM G+ E RI + G+ A S+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGIDEKRI-HVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265 >gi|320354327|ref|YP_004195666.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122829|gb|ADW18375.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 248 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD+ + P + +L+K+ +++ + I GHTD++P NW LS+ RA + Sbjct: 126 LFDEGQATLNPASYPILRKVADIIRPLPMSMRIEGHTDSTPMAGATTSNWDLSVARAVAV 185 Query: 296 YQVLMKSGV-SEDRISKISGFAHHRLKIASDPMN---SANRRIDILV 338 + + + DR+S +G+ R +A + + NRR+D ++ Sbjct: 186 MSFYHRGELFALDRMSA-AGYGDTR-PLAPNTTKDNMAKNRRVDFVL 230 >gi|261414988|ref|YP_003248671.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371444|gb|ACX74189.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326246|gb|ADL25447.1| ompA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 756 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 27/132 (20%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 D + KG+ FE +L KSS L + I +L+KI EV + + Sbjct: 539 DYLKKGIQFEFDSAKLL-------------KSSYPTLDDIIALLEKIPEVK------LEV 579 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SD 325 +GHTD + N +LS DRA+S G++ DR+ I GF R+ +A +D Sbjct: 580 QGHTDIVGTEDY---NQKLSEDRAHSVTDYFQSKGIAADRLRAI-GFG-TRMPLADNVTD 634 Query: 326 PMNSANRRIDIL 337 + NRR++++ Sbjct: 635 EGRAKNRRVELI 646 >gi|118588929|ref|ZP_01546336.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614] gi|118438258|gb|EAV44892.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614] Length = 533 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 13/103 (12%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +S+ L+GL E ++ G I + R FD +++ PE ++++++ + Sbjct: 391 VSAQLAGLEG--------LEISQAGPAIML---RMRAQFDVAAATLRPEFQLLVEQVSQT 439 Query: 259 LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 L I + GHTD+ P RN R NW LS++RA + V+ Sbjct: 440 LDQVDGEILVVGHTDSDPIRNNPRFPTNWHLSVERAKAVAAVM 482 >gi|325287672|ref|YP_004263462.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323126|gb|ADY30591.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 285 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 39/246 (15%) Query: 109 NSVDLKIGSTNQKK-----QYQRLEN-NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 NS +K+ S ++K + + LE+ N F +N+Q +LT S KG + + Sbjct: 41 NSATVKLNSCIEEKATADARLRTLEDQNDFLKANNQVLVDNMGNLTDLSAKGAE-----N 95 Query: 163 LEKSIN--KEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGL----VADNIVKGV 215 LEKS+ KE++ + L+ A+ R+ + L + + L L + ++ KGV Sbjct: 96 LEKSLESLKEKDLTIRKLND----AITRRDSVNLSLVQSLKGVLGNLDDEDIEISVEKGV 151 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 +F +SI D+ +F S VL K+ +V+ + + + GHTDA Sbjct: 152 VF--------VSISDKL---LFSSGSYNVATRAKEVLGKVAQVVNNKPDFEFMVEGHTDA 200 Query: 275 SPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+R + DNW LS+ RA + ++L + GV R++ +G + + ++D + NR Sbjct: 201 VPYRKGVLLDNWDLSVKRATAVVRILQNEYGVDPKRMTA-AGRSQYIPVSSTDK--ARNR 257 Query: 333 RIDILV 338 R I+V Sbjct: 258 RTRIVV 263 >gi|190895276|ref|YP_001985569.1| hypothetical protein RHECIAT_PC0000949 [Rhizobium etli CIAT 652] gi|190700937|gb|ACE95019.1| hypothetical conserved membrane protein [Rhizobium etli CIAT 652] gi|327193548|gb|EGE60440.1| hypothetical conserved membrane protein [Rhizobium etli CNPAF512] Length = 441 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 21/130 (16%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHSTEVI---SIRGHTDASPFR--N 279 ++++ Q +TP +S+ L + ++ I VL + E+I +I GHTD P + N Sbjct: 318 VTLLLQSSTPELFQSARPELTKGFEPLVASIATVLKQNAELIGGITITGHTDNVPLQASN 377 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSAN 331 +N RLS RA + +L SGV ++ K G + A++P+ +AN Sbjct: 378 PLSNNQRLSEARAATIASLLAASGVPAGQL-KSQG------RAATEPLAGNDSREGRAAN 430 Query: 332 RRIDILVEDR 341 RRI+IL++ R Sbjct: 431 RRIEILIQKR 440 >gi|260432828|ref|ZP_05786799.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416656|gb|EEX09915.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 580 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 14/119 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIAR--DNW 285 +FD S++ E + K+ E+L VI + GHTD P R DNW Sbjct: 463 LFDPGSAVLSDEGKREIAKVAEILRSVAAEIPPELNWVIRVDGHTDNIPVSGAGRYRDNW 522 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILVEDR 341 LS RA S + +++ G+ +R++ +GF + + A P A NRRI++ + +R Sbjct: 523 ELSQGRALSVVRYMVEELGIPPNRLAA-NGFGEFQPVDTADTPEARAKNRRIELKLTER 580 >gi|317151983|ref|YP_004120031.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942234|gb|ADU61285.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 241 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 13/95 (13%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI- 309 +L+ + VL + +++ GHTDAS + D + LS DRA + L+ +GV + R Sbjct: 145 LLEALTPVLLFTAAPVNVAGHTDAS---DTGADPYALSGDRALAVLSFLVDAGVPDRRFS 201 Query: 310 -----SKISGFAHHRLKIASDPMNSANRRIDILVE 339 S + +AS S NRR++IL++ Sbjct: 202 LSAYGSDVPALDERDRPVAS----SMNRRVEILLK 232 >gi|146306332|ref|YP_001186797.1| flagellar motor protein MotB [Pseudomonas mendocina ymp] gi|145574533|gb|ABP84065.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 296 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++++D + L G +++ ++ L E R IL +++R + F S+ P Sbjct: 121 QQVRDSVAALQQLLQGELSEGRLQ--LLEERRRIILR--VEERGS--FASGSAELTPAFE 174 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E+L +++ GHTD P R NW LS RA + L+ + E + Sbjct: 175 DMLLGMSELLVEIPGTLTVEGHTDDVPISTARFRSNWDLSAARASAVANALLLNPALEPQ 234 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 ++ GFA R ++A+D + NRR++I+++ Sbjct: 235 RLEVKGFADTRPRVANDSAQQRALNRRVEIIID 267 >gi|115372711|ref|ZP_01460017.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|310823482|ref|YP_003955840.1| thrombospondin type 3 repeat protein, outer membrane domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115370192|gb|EAU69121.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|309396554|gb|ADO74013.1| Thrombospondin type 3 repeat protein, outer membrane domain protein [Stigmatella aurantiaca DW4/3-1] Length = 5149 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 10/107 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLDRAYS 294 F + LP++ +L+++ +VL E+ +R G+TD + +N RLS RA + Sbjct: 5035 FTSKMDVILPKSFSLLKQVAQVLKAHPEIEKVRVEGYTDD---QGPDEENLRLSERRAKA 5091 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338 + L++ GV+ +R+ + GF R +AS+ + ANRR++ V Sbjct: 5092 VLERLVQEGVAAERLDSV-GFGEAR-PVASNKTSKGRDANRRVEFSV 5136 >gi|317129962|ref|YP_004096244.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474910|gb|ADU31513.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522] Length = 258 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E L K+++ Q L + L L A+N+ + + G+++ + +Q +F+ + Sbjct: 90 ENFLDSKKEENNQQLDDLLVEVLDFLEANNLYESISASRDDRGVVLVLQEQV---LFESA 146 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + + + L K+G ++ I + GHTD+ P NW LS RA S + L Sbjct: 147 RAELISDATAFLDKVGTLIESVPNPIMVEGHTDSRPIETFQFPSNWELSGARASSVIRYL 206 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILV 338 + + + + R + G+ R IA + N NRR+ I++ Sbjct: 207 VDNHDLDQSRFVSV-GYGDTR-PIAPNTTNENLQKNRRVVIVI 247 >gi|83854840|ref|ZP_00948370.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1] gi|83842683|gb|EAP81850.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1] Length = 582 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 8/83 (9%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 VI + GHTD P + DNW LS RA S + ++ G++ +R++ +GF ++ Sbjct: 502 VIRVDGHTDNQPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQ-P 559 Query: 322 IASDPMNSA---NRRIDILVEDR 341 +AS +A NRRI++ + +R Sbjct: 560 VASGNTEAARAQNRRIELKLTER 582 >gi|311277523|ref|YP_003939754.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1] gi|308746718|gb|ADO46470.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1] Length = 220 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR+G I I++ N FD SS+ P L + VL + +++ G Sbjct: 92 MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYEKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD++ +++ N RLS RA S L+ GV+ +RI + +G IAS+ Sbjct: 151 YTDSTGSKDL---NMRLSQQRADSVASSLITQGVAANRI-RTTGMGQAN-PIASNSTAEG 205 Query: 328 NSANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 206 KAQNRRVEITLSPLQ 220 >gi|229592593|ref|YP_002874712.1| putative lipoprotein [Pseudomonas fluorescens SBW25] gi|229364459|emb|CAY52284.1| putative putative lipoprotein [Pseudomonas fluorescens SBW25] Length = 163 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 251 VLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++Q+IG+ +L E + I GHTDAS N +LSL RA S VLM G+ E+ I Sbjct: 74 IVQRIGKALLGVGIERVRIDGHTDASGKETY---NQQLSLRRAKSVATVLMSVGMKEENI 130 Query: 310 SKISGFAHHRLKIASDPM--NSANRRIDILV 338 ++ G ++D + NRR+ I+V Sbjct: 131 -QLRGLGSSEPVASNDTAAGRTENRRVSIVV 160 >gi|307721192|ref|YP_003892332.1| OmpA/MotB domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979285|gb|ADN09320.1| OmpA/MotB domain protein [Sulfurimonas autotrophica DSM 16294] Length = 259 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 265 VISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 ++ ++GHTD P N +DNW LS RA + L+ GV R+S +GFA ++ I Sbjct: 160 LVDVQGHTDNTGPGANSPYKDNWELSTARALAVLHELILDGVDPARMSA-TGFAQYQ-PI 217 Query: 323 ASDPMNSA---NRRIDI 336 A++ + NRR+++ Sbjct: 218 ATNATATGREKNRRVEL 234 >gi|157889031|dbj|BAF80974.1| fibronectin-binding protein [Campylobacter lari] gi|157889036|dbj|BAF80978.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ + N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335 ++++I +K GF + + + NRR++ Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|157889041|dbj|BAF80982.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ + N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335 ++++I +K GF + + + NRR++ Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|157889046|dbj|BAF80986.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ + N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335 ++++I +K GF + + + NRR++ Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|42524415|ref|NP_969795.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100] gi|39576624|emb|CAE80788.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100] Length = 319 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 W + YAD MT+L FF++M+ ++ D D +K + +Y FG N+ S + EQ Sbjct: 26 WLVSYADMMTLLFGFFVLMYSMSRFDNTKFDLVRKEVAKY---FGGNIKEVSAALLAEQ 81 >gi|163789638|ref|ZP_02184076.1| chemotaxis motB protein [Carnobacterium sp. AT7] gi|159875170|gb|EDP69236.1| chemotaxis motB protein [Carnobacterium sp. AT7] Length = 249 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 17/142 (11%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 NI E + GI ++I + + +F S+I L +GE++ + I Sbjct: 114 NITSQASVEYDQDGIYVNI---QESILFGSGSAIIADSGKQTLNDLGELIQKFDNAVVIE 170 Query: 270 GHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDR-------ISKISGFAHHRLK 321 G+TD P N NW LS RA S + L SE+R +K G H + Sbjct: 171 GYTDNVPMYNANFSSNWELSTGRALSVLRYL-----SEERDVNPTRLAAKGYGEYHPLVP 225 Query: 322 IASDPMNSANRRIDI-LVEDRQ 342 S+ S NRR++I +V D+Q Sbjct: 226 NDSEENRSKNRRVNIVIVYDQQ 247 >gi|254302656|ref|ZP_04970014.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322848|gb|EDK88098.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 157 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R FDKS+ PE +L+ I E + + I+I GHTD+ I + N Sbjct: 30 VLDERALNFDFDKSNV--KPEYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G++EDRI I + IA++ NRR++ + R Sbjct: 83 FKLSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQ-PIATNETKEGRAQNRRVEFKLVQR 141 Query: 342 Q 342 + Sbjct: 142 E 142 >gi|188996771|ref|YP_001931022.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931838|gb|ACD66468.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 264 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 14/156 (8%) Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K++ +D KKI + ++ N+ V E G+ I I+D +F S+ E Sbjct: 76 KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILDYI---LFPPCSTEINQE 132 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L I EV+ + + + GHTD P I NW LS RA + + L+ +G Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192 Query: 306 EDRISKISGFAHHRLKIASDPMNSA-----NRRIDI 336 + G+A + P NS NRRI+I Sbjct: 193 PPYLFSAVGYADTK---PISPNNSELGRKLNRRIEI 225 >gi|222056198|ref|YP_002538560.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221565487|gb|ACM21459.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 349 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I I GHTD++P ++ R NW LS RA S + L K G ++G+ + A Sbjct: 254 IRIEGHTDSTPIKSKHRYASNWDLSAARAASVVRHLQKKGAVNPEFLTLAGYGPYAPAAA 313 Query: 324 SDPM--NSANRRIDI 336 ++ S NRRI+I Sbjct: 314 NNTSRGRSLNRRIEI 328 >gi|237756519|ref|ZP_04585048.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5] gi|237691319|gb|EEP60398.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5] Length = 264 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 14/156 (8%) Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K++ +D KKI + ++ N+ V E G+ I I+D +F S+ E Sbjct: 76 KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILDYI---LFPPCSTEINQE 132 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L I EV+ + + + GHTD P I NW LS RA + + L+ +G Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192 Query: 306 EDRISKISGFAHHRLKIASDPMNSA-----NRRIDI 336 + G+A + P NS NRRI+I Sbjct: 193 PPYLFSAVGYADTK---PISPNNSELGRKLNRRIEI 225 >gi|209522383|ref|ZP_03270996.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209497180|gb|EDZ97422.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 150 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS P VL ++ + L + EV+ S+ GHTD++ + N LS++RA S Sbjct: 41 FDTSSYTIKPSFAPVLDQLAQTLQQNPEVVASVVGHTDST---GSLQYNQTLSVNRAESV 97 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 L + G++ R+S +G ++ IA ++ +ANRR++I + Sbjct: 98 TGYLTQRGIAPQRLSA-TGMGPNQ-PIADNNTEAGRAANRRVEIYL 141 >gi|304311123|ref|YP_003810721.1| Flagellar motor protein MotB [gamma proteobacterium HdN1] gi|301796856|emb|CBL45068.1| Flagellar motor protein MotB [gamma proteobacterium HdN1] Length = 359 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD-----------DTKKAIEQYFNPFGKNLMTASK 81 W I YADF+T+L AFF+VM+ I++ +D D ++ + NP A+ Sbjct: 16 WVISYADFITLLFAFFVVMYSISSVNDGKYRVLSDSLVDAFQSASRTINPVSIGEKVATS 75 Query: 82 GIFD 85 G F+ Sbjct: 76 GNFE 79 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L KI EVL + + + G TD P R NW LS RA + ++ + GV+ R+ Sbjct: 178 LLGKISEVLKPADYSVQVEGFTDNVPIRTEQFPSNWELSAARAAAVVRLFVLGGVNPARL 237 Query: 310 SKISGFAHHRL--KIASDPMNSANRRIDILV 338 + I G+A R A+ + NRRI+I+V Sbjct: 238 AAI-GYADQRALGDNATAEGRALNRRINIIV 267 >gi|157889051|dbj|BAF80990.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ + N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDSTGPKAY---NQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRID 335 ++++I +K GF + + + NRR++ Sbjct: 290 AKEKIVTKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|108758523|ref|YP_629116.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622] gi|108462403|gb|ABF87588.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622] Length = 267 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDRAY 293 +F S+ E L+KI + L ++I + GHTD P NW LSL RA Sbjct: 159 LFASGSARVGKEGEEALKKIADALKTVQGKIIRVEGHTDDVPTGGGQFPSNWELSLARAM 218 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + + L +GV +S +G+ ++ A+D S NRRI+I++ Sbjct: 219 AVVRSLQNAGVDPTFLS-AAGYGQYQPIAANDSAENRSLNRRIEIVL 264 >gi|330951673|gb|EGH51933.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 271 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 17/174 (9%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQR 232 LS+E++ M +++ LA + + S + D I+ ET R G+++++ D Sbjct: 101 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDR-GLVMTLGD-- 157 Query: 233 NTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + +L+ + + + V+ I G+TD++ R +N LS DR Sbjct: 158 --VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDSTGDRQ---ENLTLSKDR 212 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 A + VLM G+ E RI ++ G+ A S+ + NRR++I+ D +G Sbjct: 213 AQAVADVLMDLGIDEKRI-QVEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 265 >gi|288957797|ref|YP_003448138.1| chemotaxis protein [Azospirillum sp. B510] gi|288910105|dbj|BAI71594.1| chemotaxis protein [Azospirillum sp. B510] Length = 464 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KI 322 V+ + GHTD P R NW LS RA S + L+ G+ +R++ + F + Sbjct: 387 VLRVDGHTDIKPVRFQFSSNWELSSARALSVVKFLIDQGIPAERLAA-AAFGEFQPIDPG 445 Query: 323 ASDPMNSANRRIDILVEDR 341 SD + NRRI+I ++ R Sbjct: 446 TSDEALAKNRRIEIKLDQR 464 >gi|78189866|ref|YP_380204.1| OmpA domain-containing protein [Chlorobium chlorochromatii CaD3] gi|78172065|gb|ABB29161.1| OmpA domain protein [Chlorobium chlorochromatii CaD3] Length = 205 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S+T + LV VKG ++ + G L I + ++ D+S+ + L + +LQ+ Sbjct: 73 SATTTTLVPAT-VKGYGYDQWQKGPLGDIFFEYDSATLDESAQMQLQQNAALLQQF---- 127 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 E I I GH D R + N L RA +A + LM+ GV R+ +S F R Sbjct: 128 --IVESIQIEGHCD---IRGTSEYNLALGERRATTAKEYLMRLGVPASRLETVS-FGEER 181 >gi|194365634|ref|YP_002028244.1| flagellar motor protein MotD [Stenotrophomonas maltophilia R551-3] gi|194348438|gb|ACF51561.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 338 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 23/28 (82%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDD 59 +W I YAD MT+L+AFF+VM+ I++ ++ Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISSVNE 42 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + EVL + + GHTD P NW LS RA S + GV R++ Sbjct: 184 LASLAEVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLA 243 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 + G+ R + +D NR ++V Sbjct: 244 MV-GYGQFRPREENDSAQGRNRNRRVMV 270 >gi|119470009|ref|ZP_01612814.1| putative chemotaxis protein [Alteromonadales bacterium TW-7] gi|119446719|gb|EAW27992.1| putative chemotaxis protein [Alteromonadales bacterium TW-7] Length = 319 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWR 286 II+ + +F S++ V++ + +++A I +RG+TD +N I R NW Sbjct: 153 IIELSSGMLFSSGSAVAHSRAKQVVKIVKDIIAPVDNYIRVRGYTDDETIKNEIFRSNWE 212 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 LS+ RA S L G++ R++ I G+ + Sbjct: 213 LSVARATSILVELEALGINSARMA-IEGYGQY 243 >gi|114321978|ref|YP_743661.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228372|gb|ABI58171.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 362 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322 V+ + GHTD P R NW LS RA + + LM G+ +R++ +GFA +H + Sbjct: 284 VLQVEGHTDRRPIRTAEFPSNWELSTARAQTIVRYLMDQGIPPERLAA-AGFAEYHPVDD 342 Query: 323 ASDPMNSA-NRRIDILVEDR 341 P A NRRI++ + +R Sbjct: 343 RDTPEAWARNRRIELRLTNR 362 >gi|254523338|ref|ZP_05135393.1| MotB protein [Stenotrophomonas sp. SKA14] gi|219720929|gb|EED39454.1| MotB protein [Stenotrophomonas sp. SKA14] Length = 338 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 23/28 (82%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDD 59 +W I YAD MT+L+AFF+VM+ I++ ++ Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISSVNE 42 >gi|19703598|ref|NP_603160.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713702|gb|AAL94459.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 157 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L I E + + I+I GHTD+ I + N Sbjct: 30 VLDERSLNFDFDKSNV--KPQYYDLLNNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ NRR++ + R Sbjct: 83 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141 Query: 342 Q 342 + Sbjct: 142 E 142 >gi|237752655|ref|ZP_04583135.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430] gi|229376144|gb|EEO26235.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430] Length = 233 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQKIGEVLAHSTEVISIR--GH 271 V E G++I I ++ +F S+ + P I L+++ L + + ++ GH Sbjct: 88 VELEEAERGVIIRIPEEL---LFATGSAELTNPSGIAFLKRLSLELLRMPKAVLVKAIGH 144 Query: 272 TDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---P 326 TD P R + DN LS+ R + ++L+K G+ ++RI + G IA++ Sbjct: 145 TDNVPMRANAVFADNLELSVARGVNVAELLLKQGLEKNRI--LGGGEGEFSPIANNDIPA 202 Query: 327 MNSANRRIDILV 338 + + NRR+D+ V Sbjct: 203 LRAKNRRVDLYV 214 >gi|327438679|dbj|BAK15044.1| flagellar motor protein [Solibacillus silvestris StLB046] Length = 251 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 15/103 (14%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP-- 89 SW + YAD +T+L+A F+V++ ++ D +K +EQ F N+ T G+ D NP Sbjct: 18 SWLVPYADILTLLLALFIVLFASSSVD---EKKLEQMSAVF-TNIFTGGTGVMD--NPAI 71 Query: 90 ---PERSSQNKIDLSIDE----HITKNSVDLKIGSTNQKKQYQ 125 P+ S+ I I++ T+N VD I + Q++ Sbjct: 72 IQTPDNSTPTGISKYIEDQERLQETQNRVDEFIAINELEDQFE 114 >gi|23099679|ref|NP_693145.1| flagellar motor protein MotS [Oceanobacillus iheyensis HTE831] gi|22777909|dbj|BAC14180.1| flagellar motor aparatus [Oceanobacillus iheyensis HTE831] Length = 251 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 7/161 (4%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 LA + +++ D ++ +S + +N +K V+ ++ ++ ++ +F+ + Sbjct: 92 LANEEEEKSTDELDELMMNVSQYLEENNLKDVITANRNERGVVLVLQEK--ILFESGEAE 149 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 L E L IG +L+ +++ GHTD+ P N NW LS RA S + +++ Sbjct: 150 ILEEAGPFLNHIGTLLSELDNQVNVEGHTDSRPISNYRYPSNWELSGARASSVVRYFIEA 209 Query: 303 -GVSEDRISKISGFAHH-RLKIASDPMN-SANRRIDILVED 340 + R S + G+A L+ S+ N S NRR++I++ D Sbjct: 210 ESLHMSRFSTV-GYADTVPLEPNSNEANMSKNRRVEIIILD 249 >gi|190574215|ref|YP_001972060.1| flagellar motor protein MotD [Stenotrophomonas maltophilia K279a] gi|190012137|emb|CAQ45760.1| putative chemotaxis protein MotB [Stenotrophomonas maltophilia K279a] Length = 338 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 23/28 (82%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDD 59 +W I YAD MT+L+AFF+VM+ I++ ++ Sbjct: 15 AWAIPYADLMTLLLAFFVVMYAISSVNE 42 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + EVL + + GHTD P NW LS RA S + GV R++ Sbjct: 184 LASLAEVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLA 243 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 + G+ R + +D NR ++V Sbjct: 244 MV-GYGQFRPREENDSAQGRNRNRRVMV 270 >gi|149195189|ref|ZP_01872279.1| OmpA domain protein [Caminibacter mediatlanticus TB-2] gi|149134622|gb|EDM23108.1| OmpA domain protein [Caminibacter mediatlanticus TB-2] Length = 383 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 N KG F+ + G I+ + N FD +S+ PE + ++K E L + +V I Sbjct: 259 NTPKG--FKVDQNGCAITYNFEIN---FDTNSAKIKPEYMPKIEKFAEFLKNHPDVKAEI 313 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PM 327 +G+TD R A N LS RA + Y+ L+K GV++D+I+ + G+ ++D P Sbjct: 314 QGYTDN---RGSATYNMILSEKRAKAVYEALLKLGVNKDQITFV-GYGEANPIASNDTPE 369 Query: 328 NSA-NRRI 334 A NRR+ Sbjct: 370 GRAKNRRV 377 >gi|223040101|ref|ZP_03610381.1| OmpA/MotB [Campylobacter rectus RM3267] gi|222878578|gb|EEF13679.1| OmpA/MotB [Campylobacter rectus RM3267] Length = 256 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 7/100 (7%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSS-IPLPETIVVLQKIGEVLAHSTE--VISIRGH 271 V FE + +G +I + +FDK S+ + + ++ L++I V+A V ++ GH Sbjct: 111 VTFEESESGFVIRLPANL---LFDKDSARLQNDDALLFLKRIAMVIAKLPPDVVANVIGH 167 Query: 272 TDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 TD+ P +DNW+LS RA S L+K GV +++ Sbjct: 168 TDSEQPGSAEFKDNWQLSSARAISVVTELIKDGVDPKKLT 207 >gi|168186129|ref|ZP_02620764.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund] gi|169295847|gb|EDS77980.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund] Length = 242 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWR 286 I++ + +FD + + +L KI E++ + I GHTD P N D NW Sbjct: 121 ILELKENILFDSGQADIKSSSKEILDKISELIKSVPNGVVIEGHTDNVPIHNSKYDSNWE 180 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 LS RA + + + + + + +G+ + +D + NRR++IL+ Sbjct: 181 LSTQRAVNVLKYFVVNKGEKPEKLQAAGYGEYHPIAKNDTYADRAKNRRVNILI 234 >gi|310817592|ref|YP_003949950.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309390664|gb|ADO68123.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 640 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARD--N 284 ID + T FD + + +L ++ ++L E+ I++ GHTD N+ + N Sbjct: 523 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTD-----NVGKPEAN 577 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SANRRIDILVEDR 341 RLS RA + L + GV+ R+ + G+ R IA + + + NRR+D + R Sbjct: 578 LRLSQQRAEAVRDYLARKGVAPQRL-EAKGYGQER-PIAPNTTSKGRATNRRVDFITTTR 635 Query: 342 QG 343 +G Sbjct: 636 EG 637 >gi|19705338|ref|NP_602833.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19705349|ref|NP_602844.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713317|gb|AAL94132.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713330|gb|AAL94143.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 151 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L I E + + I+I GHTD+ I + N Sbjct: 30 VLDERSLNFDFDKSNV--KPQYYDLLNNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 82 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G+SEDRI I + IA++ NRR++ + R Sbjct: 83 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQR 141 Query: 342 Q 342 + Sbjct: 142 E 142 >gi|255305283|ref|ZP_05349455.1| chemotaxis protein [Clostridium difficile ATCC 43255] Length = 231 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 QDL K++++ N+ V + GIL+ + D + +FD S ++ L Sbjct: 90 QDLKDKVNNS-------NLQNSVTVKDDSRGILLELDD---SILFDSGISELKADSKATL 139 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISK 311 K+ +++ I I GHTD P ++ + NW LS RA S + ++ + ++ Sbjct: 140 NKVYDMIKMIKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPKLFS 199 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338 +G ++ ++++ + NRR++IL+ Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228 >gi|217978313|ref|YP_002362460.1| OmpA/MotB domain protein [Methylocella silvestris BL2] gi|217503689|gb|ACK51098.1| OmpA/MotB domain protein [Methylocella silvestris BL2] Length = 337 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 16/130 (12%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 VLFE+++ +++D DK L ++ L+ E+ +I + GHTD Sbjct: 221 VLFESSQ-----AVLDTAGRAELDK-----LASALIELEH--EIPPDIPWIIRVDGHTDK 268 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSAN 331 P ++ NW LS RA + Q L+ GVS R++ +GF + D N N Sbjct: 269 KPIQSSQYPSNWSLSAARAIAVVQYLVSKGVSPQRLAA-AGFGEFQPLDPGEGDDANRRN 327 Query: 332 RRIDILVEDR 341 RRI++ + ++ Sbjct: 328 RRIELKITEK 337 >gi|167741105|ref|ZP_02413879.1| hypothetical protein Bpse14_23766 [Burkholderia pseudomallei 14] Length = 394 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 257 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 312 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 313 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 371 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 372 PIGDNRTPQGRALNRRVEITV 392 >gi|254302309|ref|ZP_04969667.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322501|gb|EDK87751.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 189 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R FDKS+ PE +L+ I E + + I+I GHTD+ I + N Sbjct: 62 VLDERALNFDFDKSNV--KPEYYDLLKNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 114 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++LS RA S L++ G++EDRI I + IA++ NRR++ + R Sbjct: 115 FKLSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQ-PIATNETKEGRAQNRRVEFKLVQR 173 Query: 342 Q 342 + Sbjct: 174 E 174 >gi|224539344|ref|ZP_03679883.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus DSM 14838] gi|224519039|gb|EEF88144.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus DSM 14838] Length = 224 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 8/89 (8%) Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+++ ++L T I+I GHTD N ++S DRAY+ L GVS + Sbjct: 128 LRELAQILKEDPTTDIAIVGHTDKV---GTYEANMKVSKDRAYTVENYLQDCGVSPSQFK 184 Query: 311 KISGFAHHRLKIASDPMN-SANRRIDILV 338 K+ G +++ D M+ S NRR+DI + Sbjct: 185 KVEGVGYNQY---DDSMSASQNRRVDIYM 210 >gi|167818291|ref|ZP_02449971.1| hypothetical protein Bpse9_24346 [Burkholderia pseudomallei 91] gi|167913436|ref|ZP_02500527.1| hypothetical protein Bpse112_23310 [Burkholderia pseudomallei 112] Length = 393 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 256 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 311 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 312 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 370 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 371 PIGDNRTPQGRALNRRVEITV 391 >gi|115373816|ref|ZP_01461109.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|115369215|gb|EAU68157.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] Length = 669 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARD--N 284 ID + T FD + + +L ++ ++L E+ I++ GHTD N+ + N Sbjct: 552 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTD-----NVGKPEAN 606 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SANRRIDILVEDR 341 RLS RA + L + GV+ R+ + G+ R IA + + + NRR+D + R Sbjct: 607 LRLSQQRAEAVRDYLARKGVAPQRL-EAKGYGQER-PIAPNTTSKGRATNRRVDFITTTR 664 Query: 342 QG 343 +G Sbjct: 665 EG 666 >gi|254189549|ref|ZP_04896059.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157937227|gb|EDO92897.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 421 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 340 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419 >gi|311992352|gb|ADQ26749.1| MotB-1 [Aeromonas hydrophila] Length = 298 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 11/146 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LAK ++ + + D ++ E I+I I R F S+ P+ V++K Sbjct: 141 LAKALADQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPVVRK 194 Query: 255 IGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312 + +L I++ GHTD A+ + + NW LS RA + A+Q++ G R+ + Sbjct: 195 VAALLKDVPGEITVSGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRLV-V 253 Query: 313 SGFAHHRLKIA-SDPMN-SANRRIDI 336 G A + + + P N NRR++I Sbjct: 254 QGMADSQPLVPNTSPENRRMNRRVEI 279 >gi|67642544|ref|ZP_00441299.1| OmpA domain protein [Burkholderia mallei GB8 horse 4] gi|121597981|ref|YP_990526.1| hypothetical protein BMASAVP1_0927 [Burkholderia mallei SAVP1] gi|124381968|ref|YP_001025016.1| hypothetical protein BMA10229_1214 [Burkholderia mallei NCTC 10229] gi|126447715|ref|YP_001079360.1| hypothetical protein BMA10247_A2189 [Burkholderia mallei NCTC 10247] gi|166999157|ref|ZP_02265003.1| OmpA family protein [Burkholderia mallei PRL-20] gi|254176494|ref|ZP_04883152.1| OmpA domain protein [Burkholderia mallei ATCC 10399] gi|254203448|ref|ZP_04909809.1| OmpA family protein [Burkholderia mallei FMH] gi|254205327|ref|ZP_04911680.1| OmpA family protein [Burkholderia mallei JHU] gi|254299607|ref|ZP_04967056.1| OmpA domain protein [Burkholderia pseudomallei 406e] gi|254356134|ref|ZP_04972411.1| OmpA family protein [Burkholderia mallei 2002721280] gi|121225779|gb|ABM49310.1| OmpA domain protein [Burkholderia mallei SAVP1] gi|126240569|gb|ABO03681.1| OmpA domain protein [Burkholderia mallei NCTC 10247] gi|147745687|gb|EDK52766.1| OmpA family protein [Burkholderia mallei FMH] gi|147754913|gb|EDK61977.1| OmpA family protein [Burkholderia mallei JHU] gi|148025117|gb|EDK83286.1| OmpA family protein [Burkholderia mallei 2002721280] gi|157809319|gb|EDO86489.1| OmpA domain protein [Burkholderia pseudomallei 406e] gi|160697536|gb|EDP87506.1| OmpA domain protein [Burkholderia mallei ATCC 10399] gi|238523712|gb|EEP87149.1| OmpA domain protein [Burkholderia mallei GB8 horse 4] gi|243064713|gb|EES46899.1| OmpA family protein [Burkholderia mallei PRL-20] gi|261826580|gb|ABM99761.2| OmpA domain protein [Burkholderia mallei NCTC 10229] Length = 421 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 340 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419 >gi|193215633|ref|YP_001996832.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089110|gb|ACF14385.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110] Length = 398 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+I + +I ++ AH+ S+ GHTD+ A N LS RA S Sbjct: 297 FDVGKATLRPESIGPINEIYSLMKAHADIKFSVEGHTDSD---GDASSNQTLSEQRAKSV 353 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDIL 337 L++ G+S DR+ K GF + +D P A NRR++ + Sbjct: 354 MDELIRMGISADRL-KFKGFGESKPVDTNDTPEGKANNRRVEFV 396 >gi|170724980|ref|YP_001759006.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810327|gb|ACA84911.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 229 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S PE+ ++L K+ + L + EVI + GHTD S N+ L L RA +A Sbjct: 126 FDFDSKSLTPESRLILDKVAKRLVQAPEVIKLVGHTDNSGSEEY---NYSLGLLRADNAQ 182 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDIL 337 L K GV + ++ S IAS+ + NRR+++L Sbjct: 183 TYLNKQGVRDTQLKSES--QGETRPIASNENLDGRALNRRVELL 224 >gi|193212308|ref|YP_001998261.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB 8327] gi|193085785|gb|ACF11061.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB 8327] Length = 108 Score = 40.8 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SI PE+ L+ E +A + ++ + GH D R A N L RA SA Sbjct: 7 FDFDRSIITPESQAQLRDNAEWMAQNKSKSLVCEGHCDE---RGTAEYNMALGERRAESA 63 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRI 334 + LM GVS DR+S IS I D S NRR+ Sbjct: 64 KESLMSLGVSGDRLSTISYGEEKPFAIGHDEAAWSQNRRV 103 >gi|53715977|ref|YP_106445.1| hypothetical protein BMAA1914 [Burkholderia mallei ATCC 23344] gi|52421947|gb|AAU45517.1| OmpA domain protein [Burkholderia mallei ATCC 23344] Length = 426 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 289 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 344 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 345 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 403 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 404 PIGDNRTPQGRALNRRVEITV 424 >gi|237509611|ref|ZP_04522326.1| type VI secretion system OmpA/MotB family protein [Burkholderia pseudomallei MSHR346] gi|235001816|gb|EEP51240.1| type VI secretion system OmpA/MotB family protein [Burkholderia pseudomallei MSHR346] Length = 421 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 340 RVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419 >gi|328542518|ref|YP_004302627.1| OmpA family protein [polymorphum gilvum SL003B-26A1] gi|326412264|gb|ADZ69327.1| OmpA family protein [Polymorphum gilvum SL003B-26A1] Length = 343 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LK 321 V+ + GHTD+ P R +NW LS RA S + L+ GV R+ +GF + L+ Sbjct: 264 VLRVDGHTDSRPLSGTGRLRNNWELSSARAISVVRYLIDRGVDPKRLVA-AGFGEFQPLE 322 Query: 322 IASDPMNSA-NRRIDILVEDR 341 P A NRRI++ + +R Sbjct: 323 DGDSPEALARNRRIELKLTER 343 >gi|167908679|ref|ZP_02495884.1| hypothetical protein BpseN_41039 [Burkholderia pseudomallei NCTC 13177] Length = 395 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 258 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 313 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 314 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 372 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 373 PIGDNRTPQGRALNRRVEITV 393 >gi|167826676|ref|ZP_02458147.1| hypothetical protein Bpseu9_23575 [Burkholderia pseudomallei 9] Length = 390 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 253 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 308 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 309 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 367 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 368 PIGDNRTPQGRALNRRVEITV 388 >gi|332702326|ref|ZP_08422414.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552475|gb|EGJ49519.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 243 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%) Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 K S++P +L++I VLA T +++ GH+D R + N+ +S +RA Q Sbjct: 141 KDSALP------ILERIAYVLAFMTAPVNVAGHSDMVGGR--SDGNYAISANRAMEVLQF 192 Query: 299 LMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 L + G+ R+S +S F + L+ + + NRR++ILV+ Sbjct: 193 LQEYGLDNRRLS-VSAFGPDQPLLEGNGPAVWNKNRRVEILVK 234 >gi|126665356|ref|ZP_01736338.1| flagellar motor protein MotB [Marinobacter sp. ELB17] gi|126629984|gb|EBA00600.1| flagellar motor protein MotB [Marinobacter sp. ELB17] Length = 313 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 11/96 (11%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSG-VS 305 +L +I EVLA ++I GHTD P I+ D NW LS RA S L+ SG V Sbjct: 181 LLLEIAEVLASIPGELTIEGHTDNVP---ISTDRFYSNWDLSAARAASVANALLASGTVE 237 Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 DR++ + G A ++ +D + NRR++I+++ Sbjct: 238 PDRLA-VKGLADTAARVDNDSAENRAKNRRVEIIID 272 >gi|163732302|ref|ZP_02139748.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149] gi|161394600|gb|EDQ18923.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149] Length = 659 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-L 320 +I + GHTD P + + DNW LS RA S + +++S G+ +R++ +GF + + Sbjct: 579 IIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVESLGIPPNRLAA-NGFGEFQPV 637 Query: 321 KIASDPMNSA-NRRIDILVEDR 341 + + P A NRRI++ +R Sbjct: 638 AVENTPQARAQNRRIELKFTER 659 >gi|73540381|ref|YP_294901.1| OmpA [Ralstonia eutropha JMP134] gi|72117794|gb|AAZ60057.1| OmpA [Ralstonia eutropha JMP134] Length = 212 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 5/109 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P VL ++ + L +V++ + GHTD++ A+ N +LS RA S Sbjct: 107 FDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHTDST---GNAQYNMQLSQRRAQSV 163 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L GV+ +R+S G A++ + NRR++I ++ QG Sbjct: 164 ATYLGDRGVARNRLSAEGRGQTQPVADNATEAGRTQNRRVEIFLKPIQG 212 >gi|307547058|ref|YP_003899537.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581] gi|307219082|emb|CBV44352.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581] Length = 223 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P L + VL T+ I+I GHTD++ A N RLS RA + Sbjct: 117 FGFDSSDLTPAATSALNDVSNVLTQYTDTRINIAGHTDST---GDAGYNQRLSERRAQAV 173 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 Q L +SGVS R++ + G+ ++ +AS+ + NRR+++ + Sbjct: 174 GQYLSQSGVSAGRLN-MQGYGENQ-PVASNDTEAGRAQNRRVEMTL 217 >gi|308188742|ref|YP_003932873.1| OOP family outer membrane lipoprotein yiaD precursor [Pantoea vagans C9-1] gi|308059252|gb|ADO11424.1| Putative OOP family outer membrane lipoprotein yiaD precursor [Pantoea vagans C9-1] Length = 220 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR G I +++ N FD SSS P L + VL + +++ G Sbjct: 92 MRGTGVSVTRNGDNI-VLNMPNNVTFDSSSSNLKPAGANTLTGVSMVLKEYPKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 +TD++ R + N RLS RA S L+ GV+ DR+ ++ +G + +++ + Sbjct: 151 YTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLRTQGAGPDNPVATNSTEAGKA 207 Query: 330 ANRRIDI 336 NRR++I Sbjct: 208 QNRRVEI 214 >gi|291483903|dbj|BAI84978.1| flagellar motor protein MotB [Bacillus subtilis subsp. natto BEST195] Length = 260 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89 SW + YAD +T+L+A F+V++ ++ D + + + FN + T G+ D + P Sbjct: 16 SWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EVFTGGTGVLDYSSVTP 71 Query: 90 PERSS 94 PE S Sbjct: 72 PENES 76 >gi|16078432|ref|NP_389251.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. 168] gi|221309232|ref|ZP_03591079.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. 168] gi|221313560|ref|ZP_03595365.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318482|ref|ZP_03599776.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. JH642] gi|221322755|ref|ZP_03604049.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. SMY] gi|321315123|ref|YP_004207410.1| flagellar motor protein MotB [Bacillus subtilis BSn5] gi|127250|sp|P28612|MOTB_BACSU RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|143208|gb|AAA22603.1| motility protein B [Bacillus subtilis] gi|2633739|emb|CAB13241.1| motility protein B; MotB component of the stator flagellum complex [Bacillus subtilis subsp. subtilis str. 168] gi|320021397|gb|ADV96383.1| flagellar motor protein MotB [Bacillus subtilis BSn5] Length = 261 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89 SW + YAD +T+L+A F+V++ ++ D + + + FN + T G+ D + P Sbjct: 17 SWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EVFTGGTGVLDYSSVTP 72 Query: 90 PERSS 94 PE S Sbjct: 73 PENES 77 >gi|13472147|ref|NP_103714.1| hypothetical protein mlr2348 [Mesorhizobium loti MAFF303099] gi|14022892|dbj|BAB49500.1| mlr2348 [Mesorhizobium loti MAFF303099] Length = 442 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 20/104 (19%) Query: 251 VLQKIGEVLAHSTEVI---SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++Q I +V+ + E+I +I GHTD + N N RLS RA + +L+++GV Sbjct: 345 LIQSIAKVILANQELIGNITIVGHTDNVRLQRSNPLASNQRLSEARAQTIADLLVQAGVP 404 Query: 306 EDRISKISGFAHHRLKIASDPM--------NSANRRIDILVEDR 341 ++RI H + SDP+ + NRR+++LVE R Sbjct: 405 QERI-------HSEGRADSDPVADNSTREGRALNRRVEVLVEKR 441 >gi|160899279|ref|YP_001564861.1| hypothetical protein Daci_3845 [Delftia acidovorans SPH-1] gi|160364863|gb|ABX36476.1| type IV / VI secretion system protein, DotU family [Delftia acidovorans SPH-1] Length = 443 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 18/122 (14%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284 S + R +FD ++++ P + V+ ++ L + + G+TD P R AR N Sbjct: 308 STVILRGDGLFDPAATVVKPRYVQVIHRVAAALDEVPGKVVVNGYTDNLPIRT-ARFPSN 366 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSA-----NRRIDI 336 W LS +RA + Q+L S R+ H + SDP+ N+A NRR++I Sbjct: 367 WNLSQERAQAVSQMLGGSLRDRQRL-------HAEGRADSDPVAPNNTAEGRALNRRVEI 419 Query: 337 LV 338 ++ Sbjct: 420 VL 421 >gi|154490982|ref|ZP_02030923.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC 43184] gi|154088730|gb|EDN87774.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC 43184] Length = 278 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+Q+L + L G +D + + +++ D+ +F+ S+ Sbjct: 120 ERVQNLLNSVKDALLGFSSDELT----VREKDGKVYVAMSDK---LLFESGSARVDKRGK 172 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL +++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 173 EALAKLAEVLNKQSDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226 >gi|297569175|ref|YP_003690519.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925090|gb|ADH85900.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 251 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSED 307 +L ++GE+L S + + GHTD P R A NW LS R+ + + L++ + D Sbjct: 139 LLDQLGEILVTSQATMVVEGHTDNVPMRPGAPFSSNWALSAARSVAVVEYLLEHYEIPRD 198 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R++ +A R +D +ANRR++ + Sbjct: 199 RLAA-EAYADSRPVAPNDTAEGRAANRRVEFRI 230 >gi|167848193|ref|ZP_02473701.1| hypothetical protein BpseB_23171 [Burkholderia pseudomallei B7210] Length = 382 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 245 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 300 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 301 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 359 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 360 PIGDNRTPQGRALNRRVEITV 380 >gi|330973477|gb|EGH73543.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 271 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323 V+ I G+TD++ R +N +LS DRA + VLM G+ E RI + G+ A Sbjct: 189 VVRIEGYTDSTGDRQ---ENLKLSKDRAQAVADVLMDLGIDEKRI-HVEGYGQEFPVNAN 244 Query: 324 -SDPMNSANRRIDILVEDRQG 343 S+ + NRR++I+ D +G Sbjct: 245 TSERGRAQNRRVEIVFSDEKG 265 >gi|197122876|ref|YP_002134827.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|196172725|gb|ACG73698.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] Length = 259 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE-----QYFNPFGKNLMTASKGIFDEQ 87 W + YADFMT+L AFF+VM+ ++ D+ K+ ++ ++ F T + +FD Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDN--KRVVQATESIRWAMHFSGTGGTGALPLFD-- 71 Query: 88 NPPERSSQNKID 99 PP ++ Sbjct: 72 GPPSEGGGPALE 83 >gi|326336238|ref|ZP_08202410.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691747|gb|EGD33714.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 278 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 107/238 (44%), Gaps = 26/238 (10%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 N+ +K+ S + K+ + +N + +N + N +T ++KG D +LE+S+ Sbjct: 38 NTATVKLNSCLKDKELLQSKNELLQKNNEGLLTNLGN-MTTLTQKGAD-----NLERSLE 91 Query: 169 KEENYFLPPLSKEKILAMKRKK----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 KEK L +K + R + + +L G++ + + + + + + Sbjct: 92 S---------LKEKDLTIKNLRDAVTRRDSINLALVQSLKGVLGNLDDQDITIQVDKGVV 142 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IAR 282 +SI D+ +F S P VL K+ +V+ + + + GHTD P +N + Sbjct: 143 YVSISDKM---LFSSGSYNVTPRAREVLGKVAKVVNNKPDFEFMVEGHTDNVPIKNNCIK 199 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI-ASDPMNSANRRIDILV 338 DNW LS+ RA + ++L GV+ R++ + + AS + NRR I+V Sbjct: 200 DNWDLSVLRATAVVRILQNDFGVTPARMTAAGRSEYVPVTTNASADGRALNRRTRIVV 257 >gi|302873043|ref|YP_003841676.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|307688801|ref|ZP_07631247.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|302575900|gb|ADL49912.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B] Length = 256 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IA 281 G++I++ D FD + + L + ++L+ + + GHTD P + Sbjct: 128 GLVITVKDNL---FFDSGKATVKEQYKRQLNALSKILSSIDNYVRVEGHTDNVPIKTPYF 184 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILV 338 NW+LS RA + ++ + G++ +R+ + G+ +R A++ +ANRR+DI++ Sbjct: 185 NSNWQLSSIRASNVVEIFATECGLNPNRLLPV-GYGEYRPIATNATEEGRAANRRVDIVI 243 >gi|254519159|ref|ZP_05131215.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226912908|gb|EEH98109.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 242 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 25/168 (14%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT------GILISIIDQRNTP 235 K L +++LQ + ++ ++IVK + E + T G++IS D Sbjct: 78 KPLVQTEEEKLQGIESQV---------NDIVKDLELEGSVTTSIEERGLIISFTDN---V 125 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294 FD + + E L + +L + + GHTD P NW+LS RA + Sbjct: 126 FFDSAKADIKEELKPKLISVSNILNKIDNYVRVEGHTDNLPISTSDYHSNWQLSSVRASN 185 Query: 295 AYQVLMKSG-VSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 + L+ G +S R+S + G+ +R +A ++ + NRR+DIL+ Sbjct: 186 VVEFLISYGSISPSRLSAV-GYGEYR-PVADNTAEEGRAKNRRVDILI 231 >gi|187932715|ref|YP_001887659.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B] gi|187720868|gb|ACD22089.1| putative chemotaxis MotB protein [Clostridium botulinum B str. Eklund 17B] Length = 244 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 18/125 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G++IS D F+ + E L I ++L I + G+TD N+A Sbjct: 115 GLIISFNDN---VFFNSGDATIKSEYKQKLISISKILNDIDNYIRVEGNTD-----NVAI 166 Query: 282 -----RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRR 333 NW+LS RA + ++L+K G ++ D++S I G+ +R ++D +ANRR Sbjct: 167 NTENFHSNWQLSAIRAANVVELLVKEGNINSDKLSAI-GYGEYRPVKSNDTEEGRAANRR 225 Query: 334 IDILV 338 +DI++ Sbjct: 226 VDIVI 230 >gi|77359764|ref|YP_339339.1| chemotaxis protein [Pseudoalteromonas haloplanktis TAC125] gi|76874675|emb|CAI85896.1| putative chemotaxis protein [Pseudoalteromonas haloplanktis TAC125] Length = 319 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 33/219 (15%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + N+++++Q L ++I Y+ + +H S++G + L + E+ Sbjct: 41 AINKEEKFQVLSDSIGYVFDKSARQH--------SQQGTGVNGDAILTDRVTPEQEV--- 89 Query: 177 PLSKEKILAMKRKKRLQD------------LAKKISSTLSGL---VADNIVKG-VLFETT 220 L E IL + +L D L K + S L+ L + D I G E + Sbjct: 90 -LYGESILKEEHGPKLLDGQSDTSNIEQKLLGKPLDSLLAKLQSSLIDEIRDGEASLELS 148 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN- 279 + + II+ + +F SS+ V++ I +++A I +RG+TD N Sbjct: 149 QDWL---IIELSSGMLFSSGSSVAQVRAKQVVKIIKDIIAPVDNYIRVRGYTDNQTIGNE 205 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + R NW LS+ RA + L G++ R++ I G+ + Sbjct: 206 MYRSNWELSVARATAVLVELESLGINSARMA-IEGYGQY 243 >gi|322421651|ref|YP_004200874.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320128038|gb|ADW15598.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 254 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 14/135 (10%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V T+ G+++S+ + FD S+ + +L + LA + + + GHTD Sbjct: 121 VSISVTQRGLVVSL---KEAGFFDSGSATLKQSSFSLLNDVVTSLASYSNSVRVEGHTDN 177 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED----RISKISGFAHHRLKI--ASDPM 327 P + + NW LS RA + Q L K ED RIS +G+ +R + Sbjct: 178 IPISSASFPSNWELSTARATNVLQYLTK---QEDFDPARISA-AGYGEYRPVADNGDEEG 233 Query: 328 NSANRRIDILVEDRQ 342 NRR+DI++ Q Sbjct: 234 RGKNRRVDIVLLSEQ 248 >gi|302878266|ref|YP_003846830.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581055|gb|ADL55066.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 281 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 28 NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +N W I YADF+T+L AFF+VM+ I++ ++ K N Sbjct: 11 DNHERWLISYADFVTLLFAFFVVMYSISSVNEGKYKTFSDSLN 53 >gi|254509011|ref|ZP_05121116.1| flagellar motor protein [Vibrio parahaemolyticus 16] gi|219548046|gb|EED25066.1| flagellar motor protein [Vibrio parahaemolyticus 16] Length = 298 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 23/118 (19%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLD 290 R F + S+ P+ ++++I +++ ++ + GHTD + + R NW LS Sbjct: 173 REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPGIVRVSGHTDNQRIESELYRSNWDLSAQ 232 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMN--------SANRRIDI 336 RA S Q + K+ GF RL++ ++P+ S NRR++I Sbjct: 233 RAVSVAQ----------EMEKVRGFTSQRLRVRGMADTEPLGPNDTEAQRSRNRRVEI 280 >gi|124010248|ref|ZP_01694902.1| chemotaxis protein MotB [Microscilla marina ATCC 23134] gi|123983684|gb|EAY24121.1| chemotaxis protein MotB [Microscilla marina ATCC 23134] Length = 286 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL + ++ I I GHTD+ P RDNW LS+ RA S ++L+K Sbjct: 181 ALGKLAEVLNKNQDIDIQIEGHTDSIPITTARFRDNWDLSVLRATSIVRILVK 233 >gi|308071044|ref|YP_003872649.1| flagellar motor protein [Paenibacillus polymyxa E681] gi|305860323|gb|ADM72111.1| Flagellar motor protein [Paenibacillus polymyxa E681] Length = 271 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 15/159 (9%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLP 246 ++K LQ+L I + DN ++ +F + + GI+I++ D+ +FD+ + Sbjct: 114 QEKELQNLMGVIQE----YITDNKLENQIFVSDQPRGIVITLNDRF---LFDQGRAALKQ 166 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-----RNIARDNWRLSLDRAYSAYQVLMK 301 + L K+ + ISI GHTD PF + +DNW LS RA S + + Sbjct: 167 GSANTLSKLASLFRDLKTPISIEGHTDNIPFTRSSNSSTYKDNWELSGARALSVLRFFLD 226 Query: 302 SGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338 + +G+A R +++ NRR++I V Sbjct: 227 REQLSPSGFQYAGYADTRPVGDNSTEAGRQKNRRVEITV 265 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 11/68 (16%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKNLMTASKGI----- 83 W I YAD +T+L+ FF+VM+ +++ D D ++++ F+ G +++ GI Sbjct: 21 WMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSLQDTFHK-GDSILEQGSGITGTAD 79 Query: 84 -FDEQNPP 90 + +NPP Sbjct: 80 RYTSKNPP 87 >gi|226940371|ref|YP_002795445.1| Outer membrane protein A [Laribacter hongkongensis HLHK9] gi|226715298|gb|ACO74436.1| Outer membrane protein A [Laribacter hongkongensis HLHK9] Length = 226 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 207 VADNIVKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHST 263 +A I G +F R IL+++ Q FD +S+ P + + I ++ + Sbjct: 91 LATQIRDGQIFVVKRADNSILVTMTSQ---TAFDTNSASLKPGFMPTINTISRIVNQYGK 147 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI 322 + I GHTD++ I N LS +RA + L+ V R+S G + R Sbjct: 148 TTLDITGHTDSTGNDRI---NVPLSQNRAAAVQNALLSRNVHPQRLSAYGMGASQPRASN 204 Query: 323 ASDPMNSANRRIDILVE 339 AS+ NRR++IL+E Sbjct: 205 ASEAGRQLNRRVEILIE 221 >gi|86141364|ref|ZP_01059910.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] gi|85831923|gb|EAQ50378.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] Length = 276 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 8/94 (8%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 VL K+ V+ + ++ + GHTD+ P ++ DNW LS+ RA S ++L + GV + Sbjct: 167 VLGKVATVVKNKPDIEFMVEGHTDSQPISTSVIEDNWDLSVKRATSVVRILQEEFGVPPE 226 Query: 308 RISKISGFAHHRLKIASDPM---NSANRRIDILV 338 R+ ++ + + +AS+ + NRR I+V Sbjct: 227 RM--VAAGRSYYVPLASNDTAEGRARNRRTRIVV 258 >gi|256370966|ref|YP_003108790.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007550|gb|ACU53117.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 258 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS 294 F S+ P V+ I VL +SI G+TD+ P N+ LS RA + Sbjct: 142 FFATDSAALGPVGDAVVDAIAGVLRTLPNDVSIEGYTDSEPIVGGPYSSNFELSAVRAVT 201 Query: 295 AYQVLMK-SGVSEDRISKISGFA-HHRLKIASDPMNSA-NRRIDILV 338 + L K G++ DR+S +GF H L + P N A NRR+DI++ Sbjct: 202 VLERLWKVDGINPDRLSA-TGFGDTHPLVPNTTPQNMAMNRRVDIVI 247 >gi|254447506|ref|ZP_05060972.1| OmpA family protein [gamma proteobacterium HTCC5015] gi|198262849|gb|EDY87128.1| OmpA family protein [gamma proteobacterium HTCC5015] Length = 1980 Score = 40.0 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%) Query: 253 QKIGEVLAHSTEVISIRGHTDASPFR----NIARDNWRLSLDRA-YSAYQVLMKSGVSED 307 Q + +V + I++ GH D P R +I DN LSL RA +A + G+ D Sbjct: 491 QILSQVDKQRVQRITVIGHADTRPIRARSQSIYADNQALSLARANVAAEYARQRLGLEAD 550 Query: 308 RISKI-SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ + G + LK S N+ANRR++I++E Q Sbjct: 551 KVDVLGKGDSFPLLKGRSGEDNAANRRVEIVIESLQ 586 >gi|254486344|ref|ZP_05099549.1| flagellar motor protein [Roseobacter sp. GAI101] gi|214043213|gb|EEB83851.1| flagellar motor protein [Roseobacter sp. GAI101] Length = 598 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 VI + GHTD P + DNW LS RA S + ++ G++ DR++ +GF ++ Sbjct: 518 VIRVDGHTDNQPLSGLGAFADNWELSQARALSVVKYMINFLGIAPDRLAA-NGFGQYQ-P 575 Query: 322 IA---SDPMNSANRRIDI 336 +A S+ + NRRI++ Sbjct: 576 VAEGDSESARAQNRRIEL 593 >gi|53721204|ref|YP_110189.1| hypothetical protein BPSS0168 [Burkholderia pseudomallei K96243] gi|76819105|ref|YP_336847.1| hypothetical protein BURPS1710b_A1690 [Burkholderia pseudomallei 1710b] gi|126443128|ref|YP_001061334.1| hypothetical protein BURPS668_A0328 [Burkholderia pseudomallei 668] gi|134280864|ref|ZP_01767574.1| OmpA domain protein [Burkholderia pseudomallei 305] gi|217423202|ref|ZP_03454704.1| OmpA family protein [Burkholderia pseudomallei 576] gi|226198699|ref|ZP_03794263.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|254263222|ref|ZP_04954087.1| OmpA domain protein [Burkholderia pseudomallei 1710a] gi|52211618|emb|CAH37613.1| OmpA family membrane protein [Burkholderia pseudomallei K96243] gi|76583578|gb|ABA53052.1| OmpA domain protein [Burkholderia pseudomallei 1710b] gi|126222619|gb|ABN86124.1| OmpA domain protein [Burkholderia pseudomallei 668] gi|134247886|gb|EBA47970.1| OmpA domain protein [Burkholderia pseudomallei 305] gi|217394110|gb|EEC34130.1| OmpA family protein [Burkholderia pseudomallei 576] gi|225929139|gb|EEH25162.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|254214224|gb|EET03609.1| OmpA domain protein [Burkholderia pseudomallei 1710a] Length = 421 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 340 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419 >gi|296329693|ref|ZP_06872178.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674090|ref|YP_003865762.1| motility protein B; MotB component of the stator flagellum complex [Bacillus subtilis subsp. spizizenii str. W23] gi|296153191|gb|EFG94055.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412334|gb|ADM37453.1| motility protein B; MotB component of the stator flagellum complex [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--P 89 SW + YAD +T+L+A F+V++ ++ D + + + FN + T G+ D + P Sbjct: 17 SWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EVFTGGTGVMDYSSVTP 72 Query: 90 PERSS 94 PE S Sbjct: 73 PENES 77 >gi|330808241|ref|YP_004352703.1| flagellar motor protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376349|gb|AEA67699.1| flagellar motor protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 294 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K I + Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKVISE 50 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A IS+ L++ N + T R L I+ ++ +F ++P + Sbjct: 100 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFGSGDAMPSDMAFNI 153 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ +L I + G TD P R NW LS R+ S ++L GV+ R++ Sbjct: 154 IDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLA 213 Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338 + G+ + A+ + NRR+ ++V Sbjct: 214 SV-GYGEFQPVANNATAEGRARNRRVVLVV 242 >gi|167896753|ref|ZP_02484155.1| hypothetical protein Bpse7_23620 [Burkholderia pseudomallei 7894] Length = 389 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ L+A I G L R+ ++ R MF ++ P +++KI + Sbjct: 252 LATLLAGEIAAGTLSVEENARRSSVMF-----RGDAMFAPGAAGVNPAMGPLIRKIAAEI 306 Query: 260 AHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 A +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 307 ARVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGA 365 Query: 318 HRLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 366 EPIGDNRTPQGRALNRRVEITV 387 >gi|124009612|ref|ZP_01694285.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC 23134] gi|123984753|gb|EAY24733.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC 23134] Length = 493 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 22/125 (17%) Query: 227 SIIDQRNTP---------MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASP 276 + D R P +F +I P + VL ++ E+L +++ I + GHTD Sbjct: 371 GVKDNRGCPEVLERASKVLFAPGKAIINPVSFPVLNELSELLKKYASTKIYLEGHTD--- 427 Query: 277 FRNIARD--NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---N 331 N D N +LS DRA + L+K G+++ RI +GF + IA + + N Sbjct: 428 --NQGDDDANLKLSKDRAQAVADYLIKKGIAKSRIES-TGFGETK-PIADNKTAAGRKKN 483 Query: 332 RRIDI 336 RR+D+ Sbjct: 484 RRVDM 488 >gi|91216090|ref|ZP_01253058.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] gi|91185607|gb|EAS71982.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] Length = 319 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNW 285 + N +F S E ++++G+VLA + ++ + I GHTD P+ DNW Sbjct: 192 VSMENKLLFASGSWTVGGEGQKAVKELGKVLADNPDIAVLIEGHTDNVPYGGNGPLTDNW 251 Query: 286 RLSLDRAYSAYQVLMKSG 303 LS RA ++L+K+G Sbjct: 252 DLSTKRATEVLKLLLKNG 269 >gi|254447387|ref|ZP_05060853.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015] gi|198262730|gb|EDY87009.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015] Length = 204 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 193 QDLA--KKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 QDL K+ L +AD + G + F+ R GI +++ + N+ + Sbjct: 45 QDLEAEKQRRQALERALADPLASGRITFQDGRIGISGNLLFRINSADLQSGGN------- 97 Query: 250 VVLQKIGE----VLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSG 303 VLQ + E L+ E++ + G TD N+ RDNW LS RA + + L++ G Sbjct: 98 QVLQDLAEPLKVYLSQHDELLMVSGFTDDLSLHEDNLYRDNWGLSAQRALTVTRTLVEQG 157 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336 + +DR+ + A+ D + A NRR++I Sbjct: 158 LPQDRLFAAAFGANAPTVPNRDAASRAKNRRVEI 191 >gi|54309669|ref|YP_130689.1| outer membrane protein [Photobacterium profundum SS9] gi|46914107|emb|CAG20887.1| conserved hypothetical outer membrane protein [Photobacterium profundum SS9] Length = 220 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 PE+ VL+ I L +S + +S+ GHTD+ + N+ L L RA S+ Q L+ + V Sbjct: 130 PESQTVLKAIARKLTNSQQTVSLAGHTDSVGSQGY---NYTLGLQRAKSSMQYLIDNEVK 186 Query: 306 EDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 + + SK G + + NRR+D+++ Sbjct: 187 DTNLKSKTYGETQPIESNTTSQGRAMNRRVDVVM 220 >gi|42521782|ref|NP_967162.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100] gi|39574312|emb|CAE77816.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100] Length = 249 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 25/34 (73%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 W + YADF+T+L AFF+VM+ + ++++ +K E Sbjct: 17 WLVSYADFITLLFAFFVVMYATSTSNEEKQKEFE 50 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYS 294 F + S+ PE + L K+ +VL + I I GHTD P + NW L+ RA + Sbjct: 135 FFQEGSAKLKPEALKSLDKVADVLKTHKKRIIIEGHTDDLPIAGTLFPSNWELAGGRASA 194 Query: 295 AYQVLMKSGVSEDR--ISKISGFAHHRLKIASDPMNSANRRIDILV 338 + L+K + + +S G + SD + NRRI+I + Sbjct: 195 VVRYLVKVHQMDPKRFVSLSYGDQKPVVPNDSDEHRAMNRRIEIFI 240 >gi|126457554|ref|YP_001074280.1| hypothetical protein BURPS1106A_A0237 [Burkholderia pseudomallei 1106a] gi|242313025|ref|ZP_04812042.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|254195472|ref|ZP_04901900.1| OmpA domain protein [Burkholderia pseudomallei S13] gi|126231322|gb|ABN94735.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|169652219|gb|EDS84912.1| OmpA domain protein [Burkholderia pseudomallei S13] gi|242136264|gb|EES22667.1| OmpA family protein [Burkholderia pseudomallei 1106b] Length = 421 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 340 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 398 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419 >gi|162146328|ref|YP_001600787.1| hypothetical protein GDI_0503 [Gluconacetobacter diazotrophicus PAl 5] gi|161784903|emb|CAP54446.1| putative outer membrane protein [Gluconacetobacter diazotrophicus PAl 5] Length = 326 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323 ++ + GH D P + NW LS RA + ++L+ G+S ++ +GFA + L Sbjct: 249 ILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHHLAA-TGFADFQPLDTH 307 Query: 324 SDPMNSA-NRRIDILVEDR 341 P A NRRI+ + DR Sbjct: 308 ETPAAFARNRRIEFRLTDR 326 >gi|38327415|gb|AAR17735.1| motility protein B [Bdellovibrio bacteriovorus] Length = 248 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 25/34 (73%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 W + YADF+T+L AFF+VM+ + ++++ +K E Sbjct: 17 WLVSYADFITLLFAFFVVMYATSTSNEEKQKEFE 50 >gi|228471996|ref|ZP_04056764.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276608|gb|EEK15321.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624] Length = 278 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 25/209 (11%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 N+ +K+ S + K+ + +N + +N + N +T ++KG D +LE+S+ Sbjct: 38 NTATIKLNSCLKDKELLQSKNEMLAKNNEGLMTNLGN-MTILTQKGAD-----NLERSLE 91 Query: 169 KEENYFLPPLSKEKILAMKRKK----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 KEK L +K + R + + +L G++ + + + + + + Sbjct: 92 S---------LKEKDLTIKNLRDAVTRRDSINLALVQSLKGVLGNLDDEDITVQVDKGVV 142 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-R 282 +SI D+ +F S P VL K+ +V+ + + + GHTD P +N + Sbjct: 143 YVSISDKM---LFSSGSYNVTPRAREVLGKVAKVVNNKPDFEFMVEGHTDNVPIKNTCIK 199 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 DNW LS+ RA + ++L GV+ R++ Sbjct: 200 DNWDLSVLRATAVVRILQNDFGVTASRMT 228 >gi|209543669|ref|YP_002275898.1| hypothetical protein Gdia_1504 [Gluconacetobacter diazotrophicus PAl 5] gi|209531346|gb|ACI51283.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 326 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323 ++ + GH D P + NW LS RA + ++L+ G+S ++ +GFA + L Sbjct: 249 ILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHHLAA-TGFADFQPLDTH 307 Query: 324 SDPMNSA-NRRIDILVEDR 341 P A NRRI+ + DR Sbjct: 308 ETPAAFARNRRIEFRLTDR 326 >gi|86157810|ref|YP_464595.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774321|gb|ABC81158.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 259 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 21/27 (77%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59 W + YADFMT+L AFF+VM+ ++ D+ Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDN 42 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V VL E R + ++ T FD + P+ + +L I L + + GH Sbjct: 118 VVSVLVEGRRLTVRLA-----ATEFFDPGQAALRPQALAMLDAIAAELVPLARPLRVEGH 172 Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDP-M 327 TD +P R NW LS RA + L ++ + +S + + H L + P Sbjct: 173 TDETPVGGGGRWISNWELSAARAATVVGYLEQAHAARPAGLSAVGLGSAHPLSTDATPEA 232 Query: 328 NSANRRIDILVE 339 + NRR+++++E Sbjct: 233 HERNRRVELVLE 244 >gi|170693360|ref|ZP_02884520.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170141890|gb|EDT10058.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 230 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LPE+ VL +I VL + I + GHTD+ P + NW LS RA Sbjct: 123 LFNSGDARLLPESFAVLDRIAAVLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAG 182 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR-IDILVE 339 + + G+ R++ I + L I +D +A R + ILVE Sbjct: 183 AVVRFFADKGIEAHRMAAIGRADNFPLIIGNDAAANAANRRVTILVE 229 >gi|220917668|ref|YP_002492972.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955522|gb|ACL65906.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 259 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 21/27 (77%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDD 59 W + YADFMT+L AFF+VM+ ++ D+ Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDN 42 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V VL E R + ++ T FD + P+ + +L I + + + GH Sbjct: 118 VVSVLVEGRRLTVRLA-----ATEFFDPGQAALRPQALALLDAIAVEIVPLERPLRVEGH 172 Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-HRLKIASDP-M 327 TD +P + R NW LS RA + L ++ + + G H L + P Sbjct: 173 TDETPVGSGGRWMSNWELSATRAATVVGYLEQAHAARPALLAAVGLGSAHPLSTDATPEA 232 Query: 328 NSANRRIDILVE 339 + NRR+++++E Sbjct: 233 HERNRRVELVLE 244 >gi|158314079|ref|YP_001506587.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec] gi|158109484|gb|ABW11681.1| OmpA/MotB domain protein [Frankia sp. EAN1pec] Length = 407 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L K+ L + + GHTD++ R + N LS+DRA A + L+ GV +RI + Sbjct: 320 LDKVARALLPGDLTVIVGGHTDSTGPRAL---NQALSIDRARVAREYLVMRGVPAERI-R 375 Query: 312 ISGFAHHRLKI--ASDPMNSANRRIDI 336 +GF + AS +ANRR+D+ Sbjct: 376 AAGFGPDQPIADNASTSGRAANRRVDV 402 >gi|149913687|ref|ZP_01902220.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b] gi|149812807|gb|EDM72636.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b] Length = 599 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 18/83 (21%) Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 V+ + GHTD P R A DNW LS+ RA S + ++ + G+ +R+S +GF ++ Sbjct: 519 VLQVDGHTDDVPVRPGAAFEDNWELSMARALSVVRYMIDTLGLPPERLSA-NGFGQYQ-- 575 Query: 322 IASDPMN--------SANRRIDI 336 P+N + NRRI++ Sbjct: 576 ----PVNPDDTPEARAQNRRIEL 594 >gi|225181601|ref|ZP_03735042.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1] gi|225167709|gb|EEG76519.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1] Length = 227 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G+++ I D+ +FD + PE +L K+ +LA+ I + GHTD P + Sbjct: 98 GVVLEIQDRL---LFDTGRAEIRPEARELLVKVAGILANVPNQIIVEGHTDNVPIQTAQY 154 Query: 283 -DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDIL 337 NW LS+DRA + L + + +R +G+ + +AS+ + NRR++I+ Sbjct: 155 PSNWELSVDRAVRVVRYLSERQDIDPERFLA-TGYGEFQ-PVASNETVQGRAKNRRVNIV 212 Query: 338 VED 340 + + Sbjct: 213 ISE 215 >gi|167921374|ref|ZP_02508465.1| hypothetical protein BpseBC_22683 [Burkholderia pseudomallei BCC215] Length = 396 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 259 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 314 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 315 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGVE 373 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 374 PIGDNRTPQGRALNRRVEITV 394 >gi|194366042|ref|YP_002028652.1| hypothetical protein Smal_2266 [Stenotrophomonas maltophilia R551-3] gi|194348846|gb|ACF51969.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 212 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%) Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRLQ L + ++ L+ G V +V G R GI S++ N+ PE Sbjct: 60 KRLQTLEQALAGPLAAGRV--TLVDG------RIGISGSVLFALNSDQLQ-------PEG 104 Query: 249 IVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301 +L+ + LA E++ + G TD +P R R DNW LS R+ + + L+ Sbjct: 105 QELLRSLAAPLAAYLGTREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIA 164 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336 GV D + + + + +D A NRR++I Sbjct: 165 DGVPADAVFAAAFGSEQPVSSNADEAGRARNRRVEI 200 >gi|330876044|gb|EGH10193.1| flagellar motor protein MotD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 295 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|315186462|gb|EFU20222.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578] Length = 395 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +K+ + + D + ET+ G+ I + F S++ LPE L+KI Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSAVLLPEEQEKLRKIA 310 Query: 257 EVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++L+ E + + GHT +P +A LS++RA + LMK GV I Sbjct: 311 QILSRYPERDLLVEGHTALAGTPEGRLA-----LSIERAKAVADFLMKLGVRRPEQIVIQ 365 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILV 338 G+ R A++ S NRR++I + Sbjct: 366 GYGATRPIADNATEAGRSRNRRVEITI 392 >gi|331016979|gb|EGH97035.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 295 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|289627957|ref|ZP_06460911.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647094|ref|ZP_06478437.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str. 2250] gi|298487807|ref|ZP_07005848.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157899|gb|EFH98978.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866472|gb|EGH01181.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 295 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|302185388|ref|ZP_07262061.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae 642] Length = 296 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|213967534|ref|ZP_03395682.1| motB protein [Pseudomonas syringae pv. tomato T1] gi|301382871|ref|ZP_07231289.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato Max13] gi|302062803|ref|ZP_07254344.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato K40] gi|302131302|ref|ZP_07257292.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927835|gb|EEB61382.1| motB protein [Pseudomonas syringae pv. tomato T1] Length = 295 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|71737581|ref|YP_275515.1| flagellar motor protein MotD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558134|gb|AAZ37345.1| chemotaxis protein MotB [Pseudomonas syringae pv. phaseolicola 1448A] gi|283133060|dbj|BAI63827.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci] gi|320325140|gb|EFW81209.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea str. B076] gi|320329399|gb|EFW85392.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea str. race 4] gi|330889033|gb|EGH21694.1| flagellar motor protein MotD [Pseudomonas syringae pv. mori str. 301020] gi|330986516|gb|EGH84619.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 295 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|83941363|ref|ZP_00953825.1| flagellar motor protein [Sulfitobacter sp. EE-36] gi|83847183|gb|EAP85058.1| flagellar motor protein [Sulfitobacter sp. EE-36] Length = 582 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 6/82 (7%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHR-- 319 VI + GHTD P + DNW LS RA S + ++ G++ +R++ +GF ++ Sbjct: 502 VIRVDGHTDNQPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQPV 560 Query: 320 LKIASDPMNSANRRIDILVEDR 341 + ++ + NRRI++ + +R Sbjct: 561 ARGNTEAARAQNRRIELKLTER 582 >gi|269119353|ref|YP_003307530.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] gi|268613231|gb|ACZ07599.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] Length = 178 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S PE L+ EV+ +S+ ++I G+TD+ + A N +LSL RA + Sbjct: 70 FDFDDSRVKPEYYGELRAAAEVIKNSSMRVNITGYTDS---KGSAEYNEKLSLRRAEAVK 126 Query: 297 QVLMKSGVSEDRISKISGFAH 317 LM+ G++E+ I+ + G Sbjct: 127 AKLMEFGLNENYIAGVRGLGE 147 >gi|218885922|ref|YP_002435243.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756876|gb|ACL07775.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 244 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 266 ISIRGHTDAS-PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI 322 I+IRG TD S P +N RDNW LS RA S + +K+G+ R++ G Sbjct: 163 INIRGFTDDSQPGQNSRFRDNWELSSLRAVSVLRYFLKAGIDSKRLTATGLGELDPLFPN 222 Query: 323 ASDPMNSANRRIDILVEDR 341 ++ + NRR++ ++E R Sbjct: 223 TTEENRARNRRVEFMLERR 241 >gi|28869189|ref|NP_791808.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852429|gb|AAO55503.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 295 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|330964668|gb|EGH64928.1| flagellar motor protein MotD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 295 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|209964330|ref|YP_002297245.1| chemotaxis MotB protein [Rhodospirillum centenum SW] gi|209957796|gb|ACI98432.1| chemotaxis MotB protein [Rhodospirillum centenum SW] Length = 309 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL ++ +LA I++ GHTD NW LS RA + + L+ +GV R+ Sbjct: 210 VLDRLVPMLARMPGTITVEGHTDPVAIATTRFPSNWELSAARAAAVVRHLVAAGVPAQRL 269 Query: 310 SKISGFAHHRLKIASDPMNSA-NRRIDILVE 339 + +G A R + +DP A NRR++I+++ Sbjct: 270 -RATGLADSR-PLTTDPARWAMNRRVEIVID 298 >gi|331011090|gb|EGH91146.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 295 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|330953776|gb|EGH54036.1| flagellar motor protein MotD [Pseudomonas syringae Cit 7] Length = 295 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|330899454|gb|EGH30873.1| flagellar motor protein MotD [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940674|gb|EGH43692.1| flagellar motor protein MotD [Pseudomonas syringae pv. pisi str. 1704B] gi|330976021|gb|EGH76087.1| flagellar motor protein MotD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 295 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|257484887|ref|ZP_05638928.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 295 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|66046660|ref|YP_236501.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae B728a] gi|63257367|gb|AAY38463.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|330972462|gb|EGH72528.1| flagellar motor protein MotD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 295 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|197120112|ref|YP_002140539.1| chemotaxis protein MotB [Geobacter bemidjiensis Bem] gi|197089472|gb|ACH40743.1| chemotaxis MotB protein [Geobacter bemidjiensis Bem] Length = 254 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V T G+++S+ + FD S+ ++ +L+ + L+ + I + GHTD Sbjct: 121 VSVSVTPRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVVSSLSSYSNGIRVEGHTDN 177 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHR-LKIASDPMNSA- 330 P + + NW LS RA + Q L K + RIS +G+ +R + SD Sbjct: 178 MPISSASFPSNWELSTARATNVLQYLTKQTDFDPYRIS-AAGYGEYRPVADNSDAEGRGK 236 Query: 331 NRRIDILVEDRQ 342 NRR+DI++ Q Sbjct: 237 NRRVDIVLLSEQ 248 >gi|254182815|ref|ZP_04889408.1| OmpA domain protein [Burkholderia pseudomallei 1655] gi|184213349|gb|EDU10392.1| OmpA domain protein [Burkholderia pseudomallei 1655] Length = 421 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+A I G L E R S + R MF ++ P +++KI +A Sbjct: 284 LATLLAGEIAAGTLSVEENARR----SSVTFRGDAMFAPGAAGVNPAMGPLIRKIAAEIA 339 Query: 261 HSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++RG+TD P R A N LS +RA Q+L +GV R+ + Sbjct: 340 KVPGKVTVRGYTDNQPIKSRQFA-SNEALSEERATQVMQMLQSAGVPASRLEALGKGGAA 398 Query: 319 RLKIASDPMNSA-NRRIDILV 338 + P A NRR++I V Sbjct: 399 PIGDNRTPQGRALNRRVEITV 419 >gi|256827978|ref|YP_003156706.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577154|gb|ACU88290.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 223 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + LP +++I +VL + I + GHTD++ N LS RA+S Sbjct: 114 FAVDSDVVLPGLYTEIERIAQVLVKYPQTTIVVEGHTDSTGSDTY---NQALSERRAWSV 170 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 ++L++ GV+ RI+ + G+ R +D NRR++I V Sbjct: 171 QRLLVERGVNPSRITAM-GYGESRPVATNDTPEGRQMNRRVEIRV 214 >gi|152983975|ref|YP_001346830.1| outer membrane protein [Pseudomonas aeruginosa PA7] gi|150959133|gb|ABR81158.1| probable outer membrane protein [Pseudomonas aeruginosa PA7] Length = 261 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 178 LSKEKILAMKRKKRLQDL-AKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNT 234 L+K+ I+ + +LQ+ A++ + L A D + + + T G +++ D Sbjct: 88 LAKQTIVLRNAESQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGD---- 143 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S P + +Q++ E L + E + + G+TD++ N N RLS RA Sbjct: 144 VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANY---NQRLSERRAD 200 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 S L+ G+S +R++ G+ +AS+ +S NRR+++ + Sbjct: 201 SVRMALLSRGISPERVA-TRGYGKE-YPVASNGTSSGRAMNRRVEVTI 246 >gi|90415361|ref|ZP_01223295.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] gi|90332684|gb|EAS47854.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] Length = 399 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPE 247 +R QD+ K L AD + L E R G I++ + Q + F SS P Sbjct: 247 QRRQDIDDKYQQIRLSLAAD--INNGLAEVERDGDKIIVRLASQGS---FVSGSSNLQPG 301 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L ++G L+ ++ + + GHTD P F NW LS R+ S + Sbjct: 302 FTGLLTRVGNSLSVTSGKVRVEGHTDNIPVAFSERFNSNWDLSAARSASVADFFADNSEL 361 Query: 306 EDRISKISGFAHHRLKIASDPMNSA-----NRRIDILVE 339 + ++GFA R D N+A NRRI+++V+ Sbjct: 362 DQSAITVAGFADTR---PIDSNNTAAGRARNRRIEVIVD 397 >gi|255322336|ref|ZP_05363482.1| OmpA/MotB [Campylobacter showae RM3277] gi|255300709|gb|EET79980.1| OmpA/MotB [Campylobacter showae RM3277] Length = 256 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHT 272 V FE + +G +I + N S+ + + ++ L++I V+A V ++ GHT Sbjct: 111 VTFEESESGFVIRL--PANLLFAKDSAKLQNDDALLFLKRIAMVIAKLPPDVVANVIGHT 168 Query: 273 DAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 D+ P +DNW+LS RA S L+K GV +++ Sbjct: 169 DSEQPASTEFKDNWQLSSARAISVVSELIKDGVDPKKLT 207 >gi|228910334|ref|ZP_04074150.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] gi|229032155|ref|ZP_04188131.1| OmpA/MotB domain protein [Bacillus cereus AH1271] gi|228729161|gb|EEL80161.1| OmpA/MotB domain protein [Bacillus cereus AH1271] gi|228849286|gb|EEM94124.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] Length = 123 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGF 315 +++ S I++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ Sbjct: 32 LVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GY 90 Query: 316 AHHRLKIASDPMN--SANRRIDILV 338 +R +D + NRR+++ + Sbjct: 91 GEYRSIAPNDTQEGKAKNRRVEVFI 115 >gi|82701882|ref|YP_411448.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] gi|82409947|gb|ABB74056.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] Length = 225 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 6/77 (7%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 ++I GHTD+S + N LSL+RA S L GVS +R+ +I G +A+D Sbjct: 145 VTIIGHTDSSGSDAV---NNPLSLNRAASTRDYLASRGVSPNRV-RIEGRGSREPIVAND 200 Query: 326 -PMNSA-NRRIDILVED 340 P N A NRR++I V + Sbjct: 201 TPQNRARNRRVEIYVAE 217 >gi|262384794|ref|ZP_06077926.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293510|gb|EEY81446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 277 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 174 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226 >gi|157889026|dbj|BAF80970.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 11/95 (11%) Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKS 302 PE +Q++G+VL + + +I GHTD NI N +LSL+RA + L K+ Sbjct: 233 PEFAQKIQEVGKVLEENPQYYTILEGHTD-----NIGPKAYNQKLSLERAKVVAKELEKT 287 Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 GV++++I+ G+ + K ++D + NRR++ Sbjct: 288 GVTKEKIA-TKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|300775912|ref|ZP_07085772.1| OmpA family protein [Chryseobacterium gleum ATCC 35910] gi|300505462|gb|EFK36600.1| OmpA family protein [Chryseobacterium gleum ATCC 35910] Length = 277 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%) Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMK 301 LP VL K+ +V+ + + I G+TD +P N+ RDNW LS R S +VL Sbjct: 162 LPAAQEVLGKVAKVINDYDKYSVLIEGNTDNAPLNSPNLPRDNWDLSALRGTSVAKVLQT 221 Query: 302 S-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 GV RI+ G + + K + ++ + NRR +I++ Sbjct: 222 QFGVDPARITA-GGRSEYNPKATNMSVSGRAENRRTEIII 260 >gi|298377743|ref|ZP_06987694.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19] gi|298265446|gb|EFI07108.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19] Length = 280 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 177 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 229 >gi|288940353|ref|YP_003442593.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288895725|gb|ADC61561.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 608 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 10/105 (9%) Query: 241 SSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 +++P E + L++I E+L AH I GHTD+ + N LSL RA + Q L Sbjct: 509 ATLPTGE-LASLERIAELLKAHPELTARIEGHTDSLGSAAL---NQSLSLQRAEAVRQAL 564 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDR 341 ++ GV R+S G R IA + NRR+++ + DR Sbjct: 565 VERGVDGGRLS-AEGLGPTR-PIADNATAEGRGKNRRVEVYILDR 607 >gi|254511081|ref|ZP_05123148.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11] gi|221534792|gb|EEE37780.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11] Length = 559 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 26/125 (20%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTE-------VISIRGHTDASPFRNIAR--DNW 285 +FD S++ E + K+ +L A + E VI + GHTD P R DNW Sbjct: 442 LFDTGSAVLSLEGREEVAKVANILRAVAAEIPEGLNWVIRVDGHTDNVPLAGSGRYRDNW 501 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 LS RA S + ++ + G+ +R++ +GF + P+N A NRRI++ Sbjct: 502 ELSQGRALSVVRYMVDALGIPPNRLAA-NGFGEFQ------PVNPADTPDARAQNRRIEL 554 Query: 337 LVEDR 341 + +R Sbjct: 555 KLTER 559 >gi|305665914|ref|YP_003862201.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170] gi|88710689|gb|EAR02921.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170] Length = 446 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 22/170 (12%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 EN P K+ + + + D+A G VA+N V E + + D Sbjct: 291 ENKGCPWTDKDGDSVLDKDDQCPDVA--------GTVANNGCPEVTEEVQK-----QLND 337 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289 T +FD S E+ V+ I ++L+ + T ++ GHTD+ A+ N LS Sbjct: 338 YARTILFDTGKSSIKAESTSVMVDIIQILSEYPTAKFTVEGHTDS---VGSAKLNQTLSE 394 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 RA S L+ G+ R+S I G+ + IA++ S NRR++I Sbjct: 395 SRANSVRDFLIDKGIGSSRLSAI-GYGEDK-PIATNNTRSGRKQNRRVEI 442 >gi|15598888|ref|NP_252382.1| Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1] gi|107103206|ref|ZP_01367124.1| hypothetical protein PaerPA_01004275 [Pseudomonas aeruginosa PACS2] gi|116051689|ref|YP_789472.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa UCBPP-PA14] gi|218890031|ref|YP_002438895.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254236602|ref|ZP_04929925.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719] gi|254242387|ref|ZP_04935709.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192] gi|296387801|ref|ZP_06877276.1| putative outer membrane protein precursor [Pseudomonas aeruginosa PAb1] gi|313109098|ref|ZP_07795070.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|9949856|gb|AAG07080.1|AE004788_10 Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1] gi|115586910|gb|ABJ12925.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa UCBPP-PA14] gi|126168533|gb|EAZ54044.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719] gi|126195765|gb|EAZ59828.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192] gi|218770254|emb|CAW26019.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|310881572|gb|EFQ40166.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 261 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 178 LSKEKILAMKRKKRLQDL-AKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNT 234 L+K+ I+ + +LQ+ A++ + L A D + + + T G +++ D Sbjct: 88 LAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGD---- 143 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S P + +Q++ E L + E + + G+TD++ N N RLS RA Sbjct: 144 VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANY---NQRLSERRAD 200 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 S L+ G+S +R++ G+ +AS+ +S NRR+++ + Sbjct: 201 SVRMALLSRGISPERVA-TRGYGKE-YPVASNGTSSGRAMNRRVEVTI 246 >gi|331006366|ref|ZP_08329676.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] gi|330419826|gb|EGG94182.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] Length = 321 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWR 286 I N +FD + P + V+ +I ++ + I + G TD N A+ NW+ Sbjct: 110 ISLSNRILFDIGNVKPSEQANEVIAQIATIMKDTVNPIRVEGFTDNLAI-NTAQFPSNWQ 168 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 LS RA + Q+L SGVS ++S + G+ + IA S+ + NRR+ +++ Sbjct: 169 LSAARASAIVQLLSASGVSPSQLSAV-GYGEFQ-PIADNSSEAGRAKNRRVVLMI 221 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 W + YADF+T+L AFF+VM+ ++ ++ + + N F Sbjct: 16 WLVSYADFVTLLFAFFVVMYSVSQINESKYEELTSTLNGF 55 >gi|70729063|ref|YP_258799.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf-5] gi|68343362|gb|AAY90968.1| motB protein [Pseudomonas fluorescens Pf-5] Length = 294 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K I + Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKVISE 50 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A IS+ L++ N + T R L I+ ++ +F ++P + + Sbjct: 100 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFGSGDAMPSDQAFTI 153 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ ++L I + G TD P + NW LS R+ S ++L GV+ R++ Sbjct: 154 IDKVAKILKPFDNPIHVEGFTDNLPIQTAQYPTNWELSSARSASIVRMLAMQGVNPARMA 213 Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338 + G+ + A+ + NRR+ ++V Sbjct: 214 SV-GYGEFQPVANNATAEGRARNRRVVLVV 242 >gi|150006781|ref|YP_001301524.1| putative flagellar motor protein MotB [Parabacteroides distasonis ATCC 8503] gi|149935205|gb|ABR41902.1| putative flagellar motor protein MotB [Parabacteroides distasonis ATCC 8503] Length = 277 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 174 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226 >gi|49083000|gb|AAT50900.1| PA3692 [synthetic construct] Length = 262 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 16/170 (9%) Query: 178 LSKEKILAMKRKKRLQDL-AKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNT 234 L+K+ I+ + +LQ+ A++ + L A D + + + T G +++ D Sbjct: 88 LAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGD---- 143 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S P + +Q++ E L + E + + G+TD++ N N RLS RA Sbjct: 144 VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANY---NQRLSERRAD 200 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVED 340 S L+ G+S +R++ G+ +AS+ +S NRR+++ + + Sbjct: 201 SVRMALLSRGISPERVA-TRGYGKE-YPVASNGTSSGRAMNRRVEVTISN 248 >gi|332668363|ref|YP_004451151.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337177|gb|AEE54278.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 312 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAY 293 +F S+ + VL KI ++L ++ + + G+TD P + DNW LS+ RA Sbjct: 188 LFQSGSATMTTKANEVLGKIAQILKSRPDLEVMVEGYTDNKPIKTACIEDNWDLSVKRAT 247 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILV 338 + + L K+ GV +R+ ++ L ++ S NRR I++ Sbjct: 248 AVARTLQKTHGVDPNRLIAAGRGEYNALATNDTEEGRSTNRRTRIII 294 >gi|301309047|ref|ZP_07214992.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3] gi|300833073|gb|EFK63698.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3] Length = 277 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 174 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 226 >gi|253702421|ref|YP_003023610.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251777271|gb|ACT19852.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 253 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 10/133 (7%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V T+ G+++S+ + FD S+ ++ +L+ + L+ + + + GHTD Sbjct: 120 VSVSVTQRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVVSSLSSYSNGLRVEGHTDN 176 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330 P + + NW LS RA + Q L K S+ KIS + + +D + Sbjct: 177 MPISSASFPSNWELSTARATNVLQYLTKQ--SDFDPYKISAAGYGEYRPVADNSEAEGRG 234 Query: 331 -NRRIDILVEDRQ 342 NRR+DI++ Q Sbjct: 235 KNRRVDIVLLSEQ 247 >gi|295136349|ref|YP_003587025.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294984364|gb|ADF54829.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 316 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 33/188 (17%) Query: 180 KEKILAMKRKKRLQDLAKKISS------TLSGLVA------------------DNIVKGV 215 KEK LA + + RL+ L K +++ L GL+A D KG+ Sbjct: 118 KEKTLAAE-QARLEKLQKDLAARSQRIDELEGLIAAKDAKMNALKDAISKALTDFEGKGL 176 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 E + +S+ N +F+ S + + ++G VLA + ++ + I GHTD Sbjct: 177 TVEQRDGKVYVSM---ENKLLFNSGSWAVNADGRQAVNQLGSVLAQNPDISVLIEGHTDN 233 Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330 P+ +DNW LS RA + Q+L ++ + + +G + +D + Sbjct: 234 VPYGGNGPLKDNWDLSTKRATAIVQILRENSNIDPQNLTAAGRGEYAPVATNDTAEGKAK 293 Query: 331 NRRIDILV 338 NRRI++++ Sbjct: 294 NRRIEVIL 301 >gi|326316328|ref|YP_004234000.1| type IV / VI secretion system protein, DotU family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373164|gb|ADX45433.1| type IV / VI secretion system protein, DotU family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 450 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 18/122 (14%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DN 284 S + R +F+ +S+ P + V+Q++ L + + + G++D P R AR N Sbjct: 307 STVTLRGDGLFEPASTEVKPRYVAVIQRVASALNEVSGKVVVNGYSDNQPIRT-ARFPSN 365 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336 W LS +RA + +L ++ R+ K G A SDP+ + NRR++I Sbjct: 366 WHLSQERAQAVAAMLQRTITDGSRV-KAEGRAE------SDPIAPNSTPEGRALNRRVEI 418 Query: 337 LV 338 ++ Sbjct: 419 VL 420 >gi|255016489|ref|ZP_05288615.1| putative flagellar motor protein MotB [Bacteroides sp. 2_1_7] Length = 280 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 177 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 229 >gi|255530239|ref|YP_003090611.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343223|gb|ACU02549.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 280 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E+IL KR + L +K+ L G G+ E + +S+ D+ +F Sbjct: 113 EEILR-KRDEATNKLKEKLQQALLGFTQS----GLTVEIKNGKVYVSLTDKL---LFPSG 164 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S I + L ++ +VL E+ I++ GHTD+ N+ +DNW LS+ R+ S + Sbjct: 165 SIIIDEKGKQALTQLADVLKQQPEINIAVEGHTDSQKITNLGQIKDNWDLSVLRSTSVVR 224 Query: 298 VLMK-SGVSEDRISKISGFAHHRLKI-ASDPMNSANRRIDILV 338 L + V R++ L S S NRRI+I++ Sbjct: 225 FLTEICKVQPVRMTATGKGEFQPLGPNTSAESRSKNRRIEIVL 267 >gi|120436189|ref|YP_861875.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578339|emb|CAL66808.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 620 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S P+ L K+ ++ + VI I HTD R N +L+ RA S Sbjct: 512 FDFDKSNIRPDAATELDKLVALMKDEYPELVIEIGSHTDR---RGTNSYNEKLAERRAKS 568 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 Y L+ G+SEDRI + G+ + I D + + +++ Sbjct: 569 TYDYLVSKGISEDRIVEFKGYGETKPAIDCDRCSEKDHQLN 609 >gi|34556728|ref|NP_906543.1| motility protein MotB [Wolinella succinogenes DSM 1740] gi|34482442|emb|CAE09443.1| MOTB PROTEIN [Wolinella succinogenes] Length = 255 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDK-SSSIPLPETIVVLQKIG-EVLAHSTEV-ISIRG 270 V E G ++SI + +F+ S++I E I+ L++ E+ S ++ I + G Sbjct: 110 AVKMEEAEDGFILSIPSEL---LFESGSATITNKEGILFLKRTALEINKLSNDMHIKVIG 166 Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTD R A +DNW LS+ R + ++L++ V+ RIS + + P Sbjct: 167 HTDNDRLRPTATYKDNWELSIARGVNVAKMLLEERVNPARISAGGNGEFDPVASNATPEG 226 Query: 329 SA-NRRIDI 336 A NRR+D+ Sbjct: 227 KAKNRRVDL 235 >gi|260891212|ref|ZP_05902475.1| OmpA family protein [Leptotrichia hofstadii F0254] gi|260859239|gb|EEX73739.1| OmpA family protein [Leptotrichia hofstadii F0254] Length = 172 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD +S+ E L+K+ + + + ISI G+TD+ R R+ LSL RA S Sbjct: 71 FDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTREYNRE---LSLRRAESLE 127 Query: 297 QVLMKSGVSEDRI--SKISGFAHHRLKIASDPMNSANRRIDI 336 + L+ G+S +RI +K +G A+ ++ +ANRRI+I Sbjct: 128 EKLIDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169 >gi|256828444|ref|YP_003157172.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577620|gb|ACU88756.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 198 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIAS 324 + I GH+D R DN RLSL+RA A +L+K G+ + S G + + A Sbjct: 127 VRINGHSDTIGQRE---DNARLSLERAEGARDILIKEGIDPSIMQVFSHGEGNLLIPTAD 183 Query: 325 DPMNSANRRIDILV 338 D NRR+++LV Sbjct: 184 DTPEPRNRRVEVLV 197 >gi|154173716|ref|YP_001407729.1| flagellar motor protein MotB [Campylobacter curvus 525.92] gi|112803650|gb|EAU00994.1| flagellar motor protein [Campylobacter curvus 525.92] Length = 242 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 26/37 (70%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ ++ I+A + + KA++ F Sbjct: 16 WAVPYADFLSLLLALFIALYAISAANTEKVKALKTEF 52 >gi|298209046|ref|YP_003717225.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] gi|83848973|gb|EAP86842.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] Length = 286 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 37/211 (17%) Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSIN--KEENYFLPPLSKEKILAMKRKKRLQ-DLAKK 198 K +LT + KG +T+LEKS+ KE++ + L A+ RK + L Sbjct: 78 ETKGNLTTLTTKG-----ATNLEKSLESLKEKDLQIKTLRD----AVTRKDSVTLALVTS 128 Query: 199 ISSTLSGLVAD-----NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + L G +AD N+ KGV++ +SI D+ +F S VL Sbjct: 129 LKGAL-GNMADEDIEINVEKGVVY--------VSISDKL---LFKSGSYNVTSRAKEVLG 176 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 K+ V+ ++ + GHTD P +N + DNW LS RA S ++L + GV R++ Sbjct: 177 KVATVVNAKPDIEFMVEGHTDNVPIKNAVLEDNWDLSAKRATSVVRILQDEYGVPPQRMT 236 Query: 311 KISGFAHHRLKIASDPM---NSANRRIDILV 338 +G +++ + +AS+ + NRR I+V Sbjct: 237 A-AGRSYY-IPVASNDTAEGRAKNRRTRIVV 265 >gi|315638943|ref|ZP_07894114.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21] gi|315480972|gb|EFU71605.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21] Length = 244 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISETNPAKVEALKTEF 52 >gi|237799262|ref|ZP_04587723.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806231|ref|ZP_04592935.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022118|gb|EGI02175.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027345|gb|EGI07400.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 296 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSQ 50 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F ++P + +++K+ +++ I + G TD P R NW LS R+ S Sbjct: 139 LFVSGDAMPSDKAFTIIEKVSDIVKRFDNPIHVEGFTDDQPIRTAQFPTNWELSSARSAS 198 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 ++L GV+ R++ + G+ + +AS+ + NRR+ +++ Sbjct: 199 IVRMLAMDGVNPARLASV-GYGEFQ-PVASNATAAGRAKNRRVVLVI 243 >gi|295675817|ref|YP_003604341.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295435660|gb|ADG14830.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 217 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS P VL ++ + L + EV+ S+ GHTD + + N LS++RA S Sbjct: 108 FDTSSYAIKPTFAPVLDQLAQTLQQNPEVVASVVGHTDNT---GSLQYNQTLSVNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 L + G++ R+S +G ++ IA ++ +ANRR++I + Sbjct: 165 TGYLTQRGIAPQRLSA-TGMGPNQ-PIADNNTEAGRAANRRVEIYL 208 >gi|46202032|ref|ZP_00053894.2| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 274 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 V+ I GHTD P NW LS RA + + L +GV +DR++ +GF + Sbjct: 196 VLRIDGHTDRRPMVSGRYPSNWELSTARAITVLRTLAANGVPKDRLA-AAGFGEFQ---P 251 Query: 324 SDPMN-----SANRRIDILVEDR 341 DP + + NRRI+I + R Sbjct: 252 VDPADNEAAYAKNRRIEIRFDQR 274 >gi|256842297|ref|ZP_05547801.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736181|gb|EEU49511.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 295 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL ++ + I GHTD+ P N A +DNW LS+ RA S ++L K Sbjct: 192 ALAKLAEVLNKQNDIDVYIEGHTDSKPI-NTAQFKDNWDLSVIRATSVVRILTK 244 >gi|92113628|ref|YP_573556.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91796718|gb|ABE58857.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 283 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + GV+ + G+ I N +F S + E VL+++ + L I+I G Sbjct: 148 FIDGVVVTQSAQGLNFRI---ENHLLFSSSQADLTDEGRAVLRQLLDSLRAFDGEITIEG 204 Query: 271 HTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 HTD+ P IA D NW LS RA + + L+ G+ + + + G+A R ++D Sbjct: 205 HTDSRP---IATDRFPSNWELSTARATAVLRFLVGEGLDSEALRAV-GYADTRPLQSNDS 260 Query: 327 MN--SANRRIDILVEDRQ 342 +ANRR+++++ + + Sbjct: 261 AEGRAANRRVELVLHEPE 278 >gi|146309839|ref|YP_001174913.1| putative outer membrane lipoprotein [Enterobacter sp. 638] gi|145316715|gb|ABP58862.1| OmpA/MotB domain protein [Enterobacter sp. 638] Length = 220 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 14/137 (10%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR G I I++ + FD SS+ P L + VL +S +++ G Sbjct: 92 MQGTGVSVTRNGDNI-ILNMPSNVTFDSSSATLKPAGANTLTGVAMVLKEYSKTAVNVIG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 +TD++ +++ N RLS RA S L+ GV+ +RI + SG IAS+ N+A Sbjct: 151 YTDSTGSQDL---NMRLSQQRADSVASSLITQGVAANRI-RTSGMGPAN-PIASN--NTA 203 Query: 331 -----NRRIDILVEDRQ 342 NRR++I + Q Sbjct: 204 EGKAQNRRVEITLSPIQ 220 >gi|77918775|ref|YP_356590.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380] gi|77544858|gb|ABA88420.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380] Length = 247 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I+ ++ +FD S+ P + +L+++ ++ ++ I GHTD N A NW + Sbjct: 113 ILRVKDAILFDAGSTELKPTALPILREVAGLVKPLPLLLRIEGHTDNQKPANPAITNWDI 172 Query: 288 SLDRAYSAYQVLMKSGVSE-DRISKISGFAHHR-LKIASDPMNSA-NRRIDILVED 340 S+ RA + + + DR+S + G+ R + P A NRR++ ++E+ Sbjct: 173 SVQRAVAVLKFFAGEDLLPLDRLSAV-GYGDQRPVAPGLGPEQQALNRRVEFVLEN 227 >gi|315057756|gb|ADT72085.1| Flagellar motor rotation protein MotB [Campylobacter jejuni subsp. jejuni S3] Length = 247 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|328470797|gb|EGF41708.1| hypothetical protein VP10329_08362 [Vibrio parahaemolyticus 10329] Length = 430 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A++IS L+ + ++V E + + IS+ R +F+ S+ + V+ K Sbjct: 287 IAERISMYLATEIGKDLVT---VEALQDRVRISL---RAQDLFESGSASVVAYIQPVISK 340 Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKI 312 + L + I I GHTD P F + NW LSL RA S + Q++ S + I + Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIPEG 400 Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336 G A ++ S+ + NRRI+I Sbjct: 401 LGDARPLVENDSEENRAMNRRIEI 424 >gi|186476941|ref|YP_001858411.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184193400|gb|ACC71365.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 217 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S P VL ++ + L + EV++ + GHTD++ N LS++RA S Sbjct: 109 FDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHTDST---GQPAYNQTLSVNRAQSV 165 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 Q L GV+ R+S A+ + + A NRR++I + Sbjct: 166 AQQLATDGVAPQRLSATGMGANQPIADNNTETGRAQNRRVEIYL 209 >gi|108756980|ref|YP_628607.1| OmpA family protein [Myxococcus xanthus DK 1622] gi|108460860|gb|ABF86045.1| OmpA family protein [Myxococcus xanthus DK 1622] Length = 409 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E+ L +R+ RL D ++ + L+ L ++ + V G+++++ Q +F + Sbjct: 239 ERELERERQARL-DAEQRATEALTQL--ESTARDVKVREEERGLVLTMSGQ---VLFASN 292 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQV 298 + LP L ++ L S + I GHTD ++ D N LS RA + Sbjct: 293 AVDLLPTAREQLTEVAHALKVSDSPMVIEGHTD-----SMGSDAMNEALSYRRAEHVREF 347 Query: 299 LMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA-NRRIDILV 338 L+ GVS DRI ++ G +R +A S P A NRR++I++ Sbjct: 348 LISQGVSRDRI-QVRGLGEYR-PVANNSTPEGRANNRRVEIIL 388 >gi|283955187|ref|ZP_06372689.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 414] gi|283793400|gb|EFC32167.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 414] Length = 247 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|283955761|ref|ZP_06373252.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 1336] gi|283792716|gb|EFC31494.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 1336] Length = 247 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|153952261|ref|YP_001398613.1| flagellar motor protein MotB [Campylobacter jejuni subsp. doylei 269.97] gi|152939707|gb|ABS44448.1| putative chemotaxis protein MotB [Campylobacter jejuni subsp. doylei 269.97] Length = 247 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|57237387|ref|YP_178400.1| flagellar motor protein MotB [Campylobacter jejuni RM1221] gi|86151261|ref|ZP_01069476.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|86153764|ref|ZP_01071967.1| flagellar motor component MotB [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612816|ref|YP_001000046.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni 81-176] gi|148926431|ref|ZP_01810114.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414633|ref|YP_001481889.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni 81116] gi|167005002|ref|ZP_02270760.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|205356014|ref|ZP_03222782.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315123901|ref|YP_004065905.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57166191|gb|AAW34970.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221] gi|85841608|gb|EAQ58855.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|85842725|gb|EAQ59937.1| flagellar motor component MotB [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250338|gb|EAQ73296.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|145844594|gb|EDK21700.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385597|gb|ABV51912.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81116] gi|205346138|gb|EDZ32773.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8421] gi|307747273|gb|ADN90543.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni M1] gi|315017623|gb|ADT65716.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931586|gb|EFV10552.1| ompA family protein [Campylobacter jejuni subsp. jejuni 327] Length = 247 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|86148944|ref|ZP_01067176.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597451|ref|ZP_01100686.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218561995|ref|YP_002343774.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840302|gb|EAQ57559.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190512|gb|EAQ94486.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112359701|emb|CAL34487.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925608|gb|ADC27960.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni IA3902] gi|315927861|gb|EFV07186.1| ompA family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928678|gb|EFV07961.1| ompA family protein [Campylobacter jejuni subsp. jejuni 305] Length = 247 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|298293019|ref|YP_003694958.1| OmpA/MotB domain protein [Starkeya novella DSM 506] gi|296929530|gb|ADH90339.1| OmpA/MotB domain protein [Starkeya novella DSM 506] Length = 344 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 12/117 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRN-IARDNWR 286 FD++S+ P+ + L K+ E L + V+ + GHTD P + NW+ Sbjct: 229 FFDRASADLRPDAMPALDKLAEALVALEKEIPSDISWVLRVDGHTDNRPIATPLFPSNWQ 288 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVEDR 341 LS R+ + Q L GVS + +GF ++ SD + NRRI++ + +R Sbjct: 289 LSAARSIAVVQYLAGKGVSPQHLVA-AGFGEYQPIDDADSDDARARNRRIELKLTER 344 >gi|187929080|ref|YP_001899567.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J] gi|187725970|gb|ACD27135.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] Length = 167 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 16/97 (16%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ VLA + +++ GHTD +P R+ N LS RA + + L + G++ DR+S Sbjct: 66 LDRLATVLADTRGKVTVLGHTDDAPGPRDRMESNLALSTARATAVARHLQERGIASDRLS 125 Query: 311 KISGFAHHRLKIASDPMN--------SANRRIDILVE 339 I + DP+ + NRR++I++E Sbjct: 126 IIG-------RGVKDPVGDNRTAAGRALNRRVEIILE 155 >gi|152984991|ref|YP_001349219.1| flagellar motor protein MotD [Pseudomonas aeruginosa PA7] gi|150960149|gb|ABR82174.1| probable chemotaxis protein [Pseudomonas aeruginosa PA7] Length = 296 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 11/70 (15%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNLMTASKGIFDEQN 88 W + YADF+T+L AFF+VM+ I++ ++ K + + FN ++L G E+ Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQPDRSLKPIPIG---EER 73 Query: 89 P----PERSS 94 P PER+S Sbjct: 74 PRTTEPERTS 83 >gi|189466239|ref|ZP_03015024.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM 17393] gi|189434503|gb|EDV03488.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM 17393] Length = 224 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 17/121 (14%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T +GIL N+ +S L E +L++ T I+I GHTD Sbjct: 106 TFESGILFGF----NSSALSNTSKASLRELAQILKE------DPTTDIAIVGHTDKV--- 152 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337 N ++S DRAY+ L GVS + ++ G +++ D M S NRR+DI Sbjct: 153 GTYEANMKVSKDRAYTVENYLQDCGVSPAQFKQVEGVGYNQY---DDSMTASQNRRVDIY 209 Query: 338 V 338 + Sbjct: 210 M 210 >gi|183222583|ref|YP_001840579.1| putative outer-membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912618|ref|YP_001964173.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777294|gb|ABZ95595.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781005|gb|ABZ99303.1| Putative outer-membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 670 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 12/84 (14%) Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSL--DRAYSAYQVLMKSGVSEDRISKISGF 315 ++ H E + I GHTD NI + ++L DRA S YQ L GV ++R+ K+ + Sbjct: 590 LIHHKNEKVEIGGHTD-----NIGNKEYNINLSEDRALSVYQYLRLKGVPKERM-KVQAY 643 Query: 316 AHHRLKIA---SDPMNSANRRIDI 336 H+ IA ++ S NRR++ Sbjct: 644 -HYSQPIADNETEEGRSRNRRVNF 666 >gi|261342404|ref|ZP_05970262.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] gi|288315039|gb|EFC53977.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] Length = 451 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE + V+++I + + I GHTDA+P R +N LS RA Q + +G+ Sbjct: 355 PEMVKVIERIASEVRRVNGDVVIVGHTDATPISRPGLPNNVVLSEKRAAEVAQYFISAGL 414 Query: 305 SEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338 E ++ K+ G + +ASD + NRR++ V Sbjct: 415 PESKV-KVRGVGSSQ-PVASDATAQGRAKNRRVEFFV 449 >gi|94270700|ref|ZP_01291804.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93450704|gb|EAT01786.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 227 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 10/93 (10%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM-KSGVSED 307 +L ++GE++ S + + GHTD P R A NW LS RA + + L+ + + D Sbjct: 110 LLDQLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRD 169 Query: 308 RISKISGFAHHRLK-IASDPM---NSANRRIDI 336 R++ + AH K +A++ +ANRR++ Sbjct: 170 RLAAV---AHADGKPVATNDTAEGRAANRRVEF 199 >gi|94264078|ref|ZP_01287877.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93455494|gb|EAT05684.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 235 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 10/92 (10%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM-KSGVSED 307 +L ++GE++ S + + GHTD P R A NW LS RA + + L+ + + D Sbjct: 118 LLDQLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRD 177 Query: 308 RISKISGFAHHRLK-IASDPM---NSANRRID 335 R++ + AH K +A++ +ANRR++ Sbjct: 178 RLAAV---AHADGKPVATNDTAEGRAANRRVE 206 >gi|78485928|ref|YP_391853.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78364214|gb|ABB42179.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2] Length = 259 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 23/123 (18%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-----------EQYFNPFGKNLMTASK 81 W I YAD MT+++AFF+++ I+ D + + E+ NP +NL +A Sbjct: 41 WLITYADAMTLILAFFILILSISEIKQDKFETLQTNLGQGLLKKEKVVNPL-QNLESALS 99 Query: 82 GIFDEQ--NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL------ENNIFY 133 + + NP E + N+ +L ID + ++GST + + ++L E N F Sbjct: 100 KVLESNQINPAEAMTLNENELRID---LPGELLFEVGSTQLEPKSKQLITALAKEINAFP 156 Query: 134 LSN 136 L N Sbjct: 157 LHN 159 >gi|57505391|ref|ZP_00371319.1| probable flagellar motor protein Cj0336c [Campylobacter upsaliensis RM3195] gi|57016216|gb|EAL53002.1| probable flagellar motor protein Cj0336c [Campylobacter upsaliensis RM3195] Length = 244 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISETNPAKVEALKTEF 52 >gi|146282902|ref|YP_001173055.1| flagellar motor protein MotD [Pseudomonas stutzeri A1501] gi|145571107|gb|ABP80213.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] Length = 278 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A+ + T L+A++ + T R L I+ ++ +F ++P + + Sbjct: 99 LERIAQSMRETFGELIANDQL------TIRGNELWIEIELSSSLLFPSGDALPNDQAFQL 152 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSED 307 + K+ +LA + + G TD P I+ D NW LS RA S ++L GV+ Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLP---ISTDKFPTNWELSAARAGSVVRMLAAQGVNPS 209 Query: 308 RISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 R++ + G+ + A+ + NRR+ ++V Sbjct: 210 RLAAV-GYGEFQPVADNATAEGRARNRRVVLVV 241 >gi|118443271|ref|YP_877986.1| chemotaxis motB protein [Clostridium novyi NT] gi|118133727|gb|ABK60771.1| chemotaxis motB protein [Clostridium novyi NT] Length = 241 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWR 286 I++ + +FD + + +L KI ++ I I GHTD P N D NW Sbjct: 121 ILELKENILFDSGQADLKLSSKEILDKISALIESVPNGIIIEGHTDNVPIHNSKYDSNWE 180 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 LS RA + + + S + + +G+ + +D + NRR++IL+ Sbjct: 181 LSTQRAVNVLKYFVVSKGEKPEKFQAAGYGEYHPIAKNDNYVDRAKNRRVNILI 234 >gi|4580974|gb|AAD24561.1|AF117969_1 OprF [Pseudomonas fluorescens] Length = 326 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ + D N +LS RA Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 275 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 + QVL+K GV+ RI+ + G+ R A++ + NRR++ VE Sbjct: 276 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|332799185|ref|YP_004460684.1| OmpA/MotB domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696920|gb|AEE91377.1| OmpA/MotB domain protein [Tepidanaerobacter sp. Re1] Length = 226 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 12/160 (7%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 +++ + ++ + L +KI + DNI GV G+++ ++ +FD + Sbjct: 64 LISAEEQREFELLEEKIQKIID---EDNI-GGVQVNLDERGLVVRFVE---GVLFDSGKA 116 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 + +L K+ +L S I I GHTD P NW LS RA + + +++ Sbjct: 117 DIRNDAKEILDKLAPLLIESHRQIRIEGHTDNLPIHTSEFPSNWELSTARAVNVVKYMIE 176 Query: 302 SGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 I +G++ +R IA S+ + NRR+DI++ Sbjct: 177 RHNLSPYIISAAGYSEYR-PIAPNDSEKNRALNRRVDIII 215 >gi|332292958|ref|YP_004431567.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171044|gb|AEE20299.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 640 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%) Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 LQ+I +++ + +I I HTD R A N LS +RA S L+K+G++ RI Sbjct: 545 LQRIIDIMNEYPALIIKIESHTDQ---RGGASYNQTLSENRATSTRDYLIKNGITSSRIE 601 Query: 311 KISGFAHHR-LKIASDPMNSA-------NRRIDILVEDR 341 GF R + I + +S NRR D +V R Sbjct: 602 SAKGFGESRPIHICDEADDSCTEVQYLENRRSDFIVVSR 640 >gi|304398041|ref|ZP_07379916.1| OmpA/MotB domain protein [Pantoea sp. aB] gi|304354327|gb|EFM18699.1| OmpA/MotB domain protein [Pantoea sp. aB] Length = 219 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR G I +++ N FD +SS P L + VL + +++ G Sbjct: 92 MRGTGVSVTRNGDNI-VLNMPNNVTFDSNSSNLKPAGANTLTGVSMVLKEYPKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 +TD++ R + N RLS RA S L+ GV+ DR+ ++ +G + +++ + Sbjct: 151 YTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLRTQGAGPDNPVATNSTEAGKA 207 Query: 330 ANRRIDI 336 NRR++I Sbjct: 208 QNRRVEI 214 >gi|84514795|ref|ZP_01002158.1| flagellar MotB protein [Loktanella vestfoldensis SKA53] gi|84510954|gb|EAQ07408.1| flagellar MotB protein [Loktanella vestfoldensis SKA53] Length = 411 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ ++ V T + + GHTD P F + RDNW L+ RA S Q + S + R Sbjct: 316 IIDELAAVTVDPTSKVVVSGHTDNVPISFGALYRDNWDLAAARAASVVQEIEASIPAPGR 375 Query: 309 ISKISGFAHHRLKIASDPMNSA----NRRIDILVEDRQ 342 ++S + K +D + NRRI++ +E Q Sbjct: 376 --EMSAISFGETKPVADNATAEGRERNRRIELEIEFEQ 411 >gi|257125599|ref|YP_003163713.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257049538|gb|ACV38722.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 256 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 17/97 (17%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E VL+ I + + ++SI G+TD S IA N RLSL RA L++ G+S+ Sbjct: 160 EAYSVLKDIKNYIEENDYLVSIVGYTDES---GIAAYNNRLSLRRAEKVSSKLLELGLSK 216 Query: 307 DRISKISGFAHHRLKIASDPMNS--------ANRRID 335 DRI + G + +P+NS NRR++ Sbjct: 217 DRILDLIGRGEN------NPINSNETKEGRERNRRVE 247 >gi|294787848|ref|ZP_06753092.1| OmpA family protein [Simonsiella muelleri ATCC 29453] gi|294484141|gb|EFG31824.1| OmpA family protein [Simonsiella muelleri ATCC 29453] Length = 217 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + LA E ISI GHTD++ +I N LS +RA + Q L+ GVS RIS Sbjct: 127 LNGAAQTLATYNETTISIIGHTDSTGNDSI---NIPLSQNRANAVAQYLISKGVSSSRIS 183 Query: 311 KISGFAHHRLKIASDPMNSA-NRRIDILV 338 A + S A NRR++IL+ Sbjct: 184 TAGHGASQPIASNSTAEGRAQNRRVEILI 212 >gi|327481242|gb|AEA84552.1| flagellar motor protein MotD [Pseudomonas stutzeri DSM 4166] Length = 278 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A+ + T L+A++ + T R L I+ ++ +F ++P + + Sbjct: 99 LERIAQSMRETFGELIANDQL------TIRGNELWIEIELSSSLLFPSGDALPNNQAFQL 152 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD----NWRLSLDRAYSAYQVLMKSGVSED 307 + K+ +LA + + G TD P I+ D NW LS RA S ++L GV+ Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLP---ISTDKFPTNWELSAARAGSVVRMLAAQGVNPS 209 Query: 308 RISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 R++ + G+ + A+ + NRR+ ++V Sbjct: 210 RLAAV-GYGEFQPVADNATAEGRARNRRVVLVV 241 >gi|229592015|ref|YP_002874134.1| putative outer membrane porin A protein [Pseudomonas fluorescens SBW25] gi|229363881|emb|CAY51363.1| putative outer membrane porin A protein [Pseudomonas fluorescens SBW25] Length = 326 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ + D N +LS RA Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 275 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 + QVL+K GV+ RI+ + G+ R A++ + NRR++ VE Sbjct: 276 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|330961246|gb|EGH61506.1| flagellar motor protein MotD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 265 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSQ 50 >gi|57168474|ref|ZP_00367608.1| chemotaxis motB protein, putative [Campylobacter coli RM2228] gi|305432893|ref|ZP_07402051.1| chemotaxis motB protein [Campylobacter coli JV20] gi|57020282|gb|EAL56956.1| chemotaxis motB protein, putative [Campylobacter coli RM2228] gi|304444047|gb|EFM36702.1| chemotaxis motB protein [Campylobacter coli JV20] Length = 243 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF 52 >gi|311031291|ref|ZP_07709381.1| flagellar motor protein MotS [Bacillus sp. m3-13] Length = 254 Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 LQ+L ++ + L A+N ++ V+ T GI++ + ++ +++ + + LP Sbjct: 101 LQELLVEVQTFL----AENDLEDVVVANRTERGIVLVLEEKV---LYETAEARILPIAHP 153 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDR 308 L K+G +L ++ + GHTD P NW LS RA S + L+ + + +R Sbjct: 154 FLDKVGTLLTKIPNLVKVEGHTDNRPISTEKFPSNWELSAARASSVIRYLVDAHDLDPER 213 Query: 309 ISKISGFAHHR--LKIASDPMNSANRRIDILVEDRQ 342 + G+ R ++ S+ NRR++I++ D Q Sbjct: 214 FIAV-GYGDTRPIVENTSNANYQKNRRVEIVISDPQ 248 >gi|119357472|ref|YP_912116.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354821|gb|ABL65692.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266] Length = 229 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 13/109 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD--NWRLSLDRA 292 +F+ SS + ++K+ +LA + + I GHTD+ + D N LS +RA Sbjct: 111 LFNTGSSAITSTSRYNIEKLAGILAKYDDTNLIIEGHTDS-----VGSDSMNQTLSENRA 165 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 S +L GVS R+S I G+ R IAS+ S NRR+++L+ Sbjct: 166 QSVANLLKAYGVSSSRLSAI-GYGESR-PIASNETESGRRLNRRVEVLI 212 >gi|90412166|ref|ZP_01220172.1| Conserved hypothetical outer membrane protein [Photobacterium profundum 3TCK] gi|90326890|gb|EAS43275.1| Conserved hypothetical outer membrane protein [Photobacterium profundum 3TCK] Length = 220 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 PE+ VL+ I + L +S + +++ GHTD+ + N+ L L RA S+ Q L+ + V Sbjct: 130 PESQTVLKTIAQKLKNSPQTVTLNGHTDSVGPQGY---NYTLGLQRAKSSMQYLIDNEVK 186 Query: 306 EDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 + + SK G + + NRR+D+++ Sbjct: 187 DTNLKSKTYGETQPIESNTTSQGRAMNRRVDVVM 220 >gi|330502789|ref|YP_004379658.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01] gi|328917075|gb|AEB57906.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01] Length = 269 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYS 294 +F +IP + +++K+ ++LA + + G TD P + NW LS RA S Sbjct: 130 LFPSGDAIPNNQAFDIIEKVAKILAPYQNPVKVEGFTDNLPIQTAQYPTNWELSTARASS 189 Query: 295 AYQVLMKSGVSEDRISKI 312 ++L GV R++ + Sbjct: 190 IVRMLAMDGVDPSRLAAV 207 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K + + G+F N P+R Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSESLT-----------GVF---NQPDR 61 Query: 93 S 93 S Sbjct: 62 S 62 >gi|289678953|ref|ZP_06499843.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae FF5] Length = 234 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQ 50 >gi|74055057|gb|AAZ95862.1| PomB [Aeromonas hydrophila] Length = 303 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 11/162 (6%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK---KISSTLSGLVAD 209 +GK L + ++ + + E+ LP S I + K+ LAK ++ ++ LV Sbjct: 72 QGKSLLNN-EVSAAPSVLESALLPSPSLAPISGVPIKQDGMTLAKIDTQLKESMGTLVDA 130 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 +VK L + T ++ + +F S+ VL + ++L + +R Sbjct: 131 GVVKLTLDDNWLT------VELSSGLLFGSGSAFMSTNADPVLNTLSDILKPVDNYVRVR 184 Query: 270 GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 G+TD N I R NW LS RA + VL+ G++ R++ Sbjct: 185 GYTDNQQINNEIFRSNWTLSAARAEAVLTVLIAKGIAPQRLA 226 >gi|77457796|ref|YP_347301.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf0-1] gi|77381799|gb|ABA73312.1| putative chemotaxis protein [Pseudomonas fluorescens Pf0-1] Length = 296 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K I + Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKIISE 50 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A IS+ L++ N + T R L I+ ++ +F ++P + Sbjct: 100 LKSIADDISAAFGDLISSNQM------TVRGNELWVEIELNSSLLFGSGDAMPSDIAFNI 153 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ +L I + G TD P R NW LS R+ S ++L GV+ R++ Sbjct: 154 IDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLA 213 Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338 + G+ + A+ + NRR+ ++V Sbjct: 214 SV-GYGEFQPVANNATAEGRAKNRRVVLVV 242 >gi|304393260|ref|ZP_07375188.1| OmpA/MotB domain protein [Ahrensia sp. R2A130] gi|303294267|gb|EFL88639.1| OmpA/MotB domain protein [Ahrensia sp. R2A130] Length = 343 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--L 320 V+ + GHTD P R DNW LS RA S + L+ GV +R+ +GF + Sbjct: 264 VLRVDGHTDNIPLSGSGRYADNWELSSGRATSVVKYLITQGVPAERLVA-AGFGEFQPLE 322 Query: 321 KIASDPMNSANRRIDI 336 + + NRRI++ Sbjct: 323 DVDTQEARDRNRRIEL 338 >gi|317503691|ref|ZP_07961708.1| OmpA family protein [Prevotella salivae DSM 15606] gi|315665212|gb|EFV04862.1| OmpA family protein [Prevotella salivae DSM 15606] Length = 683 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D + + PE+ L + +L + V I I H D +R A N RLS RA + Sbjct: 521 FYDFNKATLRPESTAALDDLVALLNENPHVTIEISAHCD---YRGSAEYNLRLSQQRAEN 577 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI 322 + L+ G+S DR++ + G+ R K+ Sbjct: 578 VVRYLISKGISADRLTAV-GYGKQRPKV 604 >gi|260886728|ref|ZP_05897991.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185] gi|330839448|ref|YP_004414028.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185] gi|260863580|gb|EEX78080.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185] gi|329747212|gb|AEC00569.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185] Length = 303 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W + Y+D MT+L+A F+ ++ ++ATD + Q F T F + P E Sbjct: 17 AWLLPYSDLMTLLLATFIALYAMSATDSSKMAQMAQAFT---AAFNTGGPSFFSQMGPSE 73 >gi|332975535|gb|EGK12425.1| OmpA domain protein [Desmospora sp. 8437] Length = 243 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 L K+G+ L + I G+TD R A N +LS +RA + L+K G++ D + Sbjct: 155 LDKLGKSLKEYKGTVRIYGYTDD---RGSAAYNQKLSQERAEAVKAYLVKECGIAGDHL- 210 Query: 311 KISGFA--HHRLKIASDPMNSANRRIDILVEDR 341 KI GF H + SD NRR++I+V+ + Sbjct: 211 KIKGFGKKHPVVPNNSDSNRQKNRRVEIIVDSK 243 >gi|317133447|ref|YP_004092761.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3] gi|315471426|gb|ADU28030.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3] Length = 259 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271 K V +T G++I++ D NT S+ + P +VL +IG+ L + +I + GH Sbjct: 110 KNVDLSSTSKGLVITLKD--NTLYTPGSAVMNQPGQDLVL-RIGDALKQVNYALIIVEGH 166 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TD+ P N +DN LS RA + + L+ G+ +I+ + + P N A Sbjct: 167 TDSDPIHNAQFQDNIELSSARADNVERALIGRGLDAAKIAAMGRGDTVPVAPNDTPANKA 226 Query: 331 -NRRIDILV 338 NRR+ I + Sbjct: 227 KNRRVVITI 235 >gi|312793260|ref|YP_004026183.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180400|gb|ADQ40570.1| OmpA/MotB domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 257 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +K+VA + N+ W I YAD +T+L+ +F+VM+ ++ D D F F ++L Sbjct: 3 RKRVAEPEKENH-ERWLITYADLITLLLIYFIVMYSMSKLDMDK-------FKNFTESLT 54 Query: 78 TASKG---IFDEQNP 89 + KG IF+ P Sbjct: 55 SVLKGTAYIFENSGP 69 >gi|269962960|ref|ZP_06177298.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832322|gb|EEZ86443.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 430 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 12/150 (8%) Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ D+A++IS L A I KG V + + ISI Q +F+ S+ + Sbjct: 283 QVTDIAERISMYL----ATEISKGLVTVDALPDRVRISIKAQ---DLFESGSAEVVEYIQ 335 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 V+ K+ L + I + GHTD P F + NW LSL RA + + L+ + + R Sbjct: 336 PVISKLARTLEATEGKILVAGHTDDKPIFTSKYPSNWHLSLARATAMSEQLIANSALKGR 395 Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + G R + SD + NRRI+I Sbjct: 396 VLP-EGLGDARPLVDNTSDENRALNRRIEI 424 >gi|220935429|ref|YP_002514328.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996739|gb|ACL73341.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 427 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322 V+ + GHTD P R NW LS RA S L+ GV+ R++ +GF +H L Sbjct: 347 VLMVEGHTDRRPIRTEQFPSNWELSSARAQSIVNYLISRGVAPRRLAA-AGFGEYHPLDA 405 Query: 323 AS-DPMNSANRRIDI 336 S + S NRRI++ Sbjct: 406 GSTEAAFSRNRRIEM 420 >gi|313681736|ref|YP_004059474.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154596|gb|ADR33274.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 266 ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKI 322 ISIRG+TD P A +DN LS RA + + L+++GV+ +R+S G A + Sbjct: 182 ISIRGYTDNQPLPPGAGYKDNIELSSRRAETVMRELIRNGVAPERLSTAGFGAAKPVAEN 241 Query: 323 ASDPMNSANRRIDILV 338 ++ + NRR++ + Sbjct: 242 TTEENRAKNRRVEFYM 257 >gi|222823421|ref|YP_002574995.1| outer membrane fibronectin-binding protein [Campylobacter lari RM2100] gi|222538643|gb|ACM63744.1| outer membrane fibronectin-binding protein [Campylobacter lari RM2100] gi|244538678|dbj|BAH82830.1| fibronectin-binding protein [Campylobacter lari] gi|244538683|dbj|BAH82834.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVISI-RGHTDAS 275 R G L+ I T M + PE +Q++G+VL + + +I GHTD + Sbjct: 204 RKGALLDHIGCEKTIMLEGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT 263 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR 332 + N +LSL+RA + + L K+GV++++I+ G+ + IAS+ NR Sbjct: 264 GPKAY---NQKLSLERAKAVAKELEKAGVAKEKIT-TKGYGFEK-PIASNDTKEGRAQNR 318 Query: 333 RID 335 R++ Sbjct: 319 RVE 321 >gi|312127873|ref|YP_003992747.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311777892|gb|ADQ07378.1| OmpA/MotB domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 257 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +K+VA + N+ W I YAD +T+L+ +F+VM+ ++ D D F F ++L Sbjct: 3 RKRVAEPEKENH-ERWLITYADLITLLLIYFIVMYSMSKLDMDK-------FKNFTESLT 54 Query: 78 TASKG---IFDEQNP 89 + KG IF+ P Sbjct: 55 SVLKGTAYIFENSGP 69 >gi|244538668|dbj|BAH82822.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVISI-RGHTDAS 275 R G L+ I T M + PE +Q++G+VL + + +I GHTD + Sbjct: 204 RKGALLDHIGCEKTIMLEGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT 263 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR 332 + N +LSL+RA + + L K+GV++++I+ G+ + IAS+ NR Sbjct: 264 GPKAY---NQKLSLERAKAVAKELEKAGVAKEKIT-TKGYGFEK-PIASNDTKEGRAQNR 318 Query: 333 RID 335 R++ Sbjct: 319 RVE 321 >gi|15895120|ref|NP_348469.1| flagellar motor protein MotB [Clostridium acetobutylicum ATCC 824] gi|15024821|gb|AAK79809.1|AE007693_7 Flagellar motor protein MotB [Clostridium acetobutylicum ATCC 824] gi|325509259|gb|ADZ20895.1| Flagellar motor protein MotB [Clostridium acetobutylicum EA 2018] Length = 254 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 +W I YAD +T+L+A F+VM+ ++ D+ + + Q F+ + ++ KG+ E Sbjct: 16 TWLIPYADMLTLLLALFIVMFAMSKVDNKKLQKMSQEFSA----IFSSGKGVLVE 66 >gi|323528401|ref|YP_004230553.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323385403|gb|ADX57493.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 233 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F+ + LPE+ VL +I VL + I + GHTD+ P + NW LS RA Sbjct: 126 LFNSGDARLLPESFAVLGQIATVLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAG 185 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR-IDILVE 339 + + G+ R++ I + L I +D +A R + ILVE Sbjct: 186 AVVRFFADRGIEAHRMAAIGRADNFPLIIGNDAAANAANRRVTILVE 232 >gi|244538673|dbj|BAH82826.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 13/123 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPL----PETIVVLQKIGEVLAHSTEVISI-RGHTDAS 275 R G L+ I T M + PE +Q++G+VL + + +I GHTD + Sbjct: 204 RKGALLDHIGCEKTIMLEGHFGFDQITVNPEFAQKIQEVGKVLEENPQYYTILEGHTDNT 263 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NR 332 + N +LSL+RA + + L K+GV++++I+ G+ + IAS+ NR Sbjct: 264 GPKAY---NQKLSLERAKAVAKELEKAGVAKEKIT-TKGYGFEK-PIASNDTKEGRAQNR 318 Query: 333 RID 335 R++ Sbjct: 319 RVE 321 >gi|88800584|ref|ZP_01116145.1| chemotaxis MotB protein, putative [Reinekea sp. MED297] gi|88776639|gb|EAR07853.1| chemotaxis MotB protein, putative [Reinekea sp. MED297] Length = 355 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 22/126 (17%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---------------VISIRGHTDASPFR 278 T + D +++I LPE+I+ ++ A + +ISI+GHTD+ Sbjct: 216 TQLEDGTTAIKLPESILFASGRADINAEGRQSLANLATALSSFPNHLISIQGHTDSQTIA 275 Query: 279 NIARD----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANR 332 + NW LS RA SA + L+K G+ D++ + G+A R ++ S NR Sbjct: 276 PATAEKYPTNWELSAARAASAVRELLKQGIPADQMQAV-GYADTRPLVEETSAQTRQQNR 334 Query: 333 RIDILV 338 RI++++ Sbjct: 335 RIEVIL 340 >gi|319786952|ref|YP_004146427.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465464|gb|ADV27196.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 216 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIAR---DN 284 R +F +S PE VL+ + LA E V+ + G TD P R DN Sbjct: 88 RGNVLFALNSDQLQPEGRQVLRSLAAPLARYLEAGEQVLMVSGFTDDRPVHEGNRRFADN 147 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336 W LS RA + + L++ GV D + + A + D A NRR++I Sbjct: 148 WELSAQRALTVTRALIEEGVPADSVFAAAFGAQQPVSPNDDEEGRARNRRVEI 200 >gi|126662605|ref|ZP_01733604.1| possible outer membrane protein [Flavobacteria bacterium BAL38] gi|126625984|gb|EAZ96673.1| possible outer membrane protein [Flavobacteria bacterium BAL38] Length = 467 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-A 260 T++G VA+N V +T + + D T +F+ + +TI VLQ + +L Sbjct: 335 TVAGTVANNGCPEVSDDTMK-----KLNDYGKTILFNSGKASFQKQTIPVLQAMTAILKE 389 Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + T S+ GHTD++ + N +LS +RA + L+++G+ R+S GF Sbjct: 390 YPTAKFSLEGHTDSTGADAL---NQKLSEERAAAVKNFLVENGIDASRLSS-KGFGESMP 445 Query: 321 ----KIASDPMNSANRRIDI 336 K A N NRR+++ Sbjct: 446 VDSNKTAKGKAN--NRRVEV 463 >gi|77164341|ref|YP_342866.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|254434085|ref|ZP_05047593.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani AFC27] gi|76882655|gb|ABA57336.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|207090418|gb|EDZ67689.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani AFC27] Length = 248 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + P + L KI EVL ++ V+ + GHTD++ + N LSL RA + Sbjct: 121 FDHDSDVLKPAFLPTLDKIAEVLKKYNKTVVHVIGHTDST---GSEKYNLDLSLRRAGNV 177 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + GV R+S G + R A+ NRR++I++ Sbjct: 178 AVYFERKGVPSQRLSIYGRGESEPRASNATAAGRQLNRRVEIIL 221 >gi|330752332|emb|CBL87286.1| protein with similarity to outer membrane OmpA family protein [uncultured Flavobacteria bacterium] Length = 292 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDN 284 + ++ Q F +++ LP++I L+++ + +L H + +RGH + P + Sbjct: 175 VGMVYQLKEIFFIPATAQYLPKSIKELERLKQFLLNHEVLKVQVRGHVNG-PAQTKPEFY 233 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338 LS RA + Q L+ +GV E+R+ + G ++ +++ +S NRR++I++ Sbjct: 234 QELSDARAKAIKQFLVGNGVGEERVDE-KGMSNFQMRYSSPKTAFEAGENRRVEIII 289 >gi|254464778|ref|ZP_05078189.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206685686|gb|EDZ46168.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 613 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 22/85 (25%) Query: 265 VISIRGHTDASPFRNIAR----DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR 319 +I + GHTD +P +A DNW LS RA S + ++++ GV R++ +GF ++ Sbjct: 533 IIRVDGHTDDTPL--VAHPKFNDNWELSQGRALSVVRYMVEALGVPPSRLAA-NGFGEYQ 589 Query: 320 LKIASDPMNSA--------NRRIDI 336 P+NSA NRRI++ Sbjct: 590 ------PVNSAGTPEARAQNRRIEL 608 >gi|186472558|ref|YP_001859900.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184194890|gb|ACC72854.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 207 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 220 TRTGILISIIDQRNTP-----MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTD 273 TR G L++ R T +FD ++ + P++ V +Q++ VLA +++ GHTD Sbjct: 85 TRYGTLLAAQPPRPTTFTINFLFDSATEL-APQSAVTVQQMKAVLATWPAPHLTVVGHTD 143 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANR 332 + RLS+ RA + + L+K+G+ +I + L +D + N NR Sbjct: 144 ---LAGSPEYDDRLSMQRAQTVAKFLIKAGIPARQIETAARGKREPLVHTADGVPNQMNR 200 Query: 333 RIDILVE 339 R+ I ++ Sbjct: 201 RVVITIQ 207 >gi|328958204|ref|YP_004375590.1| flagellar motor protein MotB [Carnobacterium sp. 17-4] gi|328674528|gb|AEB30574.1| flagellar motor protein MotB [Carnobacterium sp. 17-4] Length = 249 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 24/35 (68%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD 58 ++ P N W + YADF+T+LM FF++M+ ++ D Sbjct: 9 EEEPENHERWLLSYADFITLLMIFFIIMYSMSEMD 43 >gi|283853198|ref|ZP_06370451.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283571456|gb|EFC19463.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 245 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 10/171 (5%) Query: 177 PLSKEKILAM----KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 P+S +++ A+ + K+R+ +++ V+ ++GVL T +G + I Sbjct: 72 PVSGQEMSALVEQARIKQRIIGEQRRVFENFRSFVSQKGLEGVLGATLESGTIT--ISLP 129 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR--DNWRLSL 289 +F K E V L+ + E L + E I+IRG TD P +R DNW +S Sbjct: 130 TGVLFPKDGVDLTDEGKVRLRTLHEFLIKTAGERINIRGFTDDLPPAAGSRFRDNWEVSS 189 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILVE 339 RA + + ++ G++ +R++ L + P + A N+R++ ++E Sbjct: 190 LRAVAVLRYMLSLGMAPNRLTATGLADLEPLYPNTTPEHRARNQRVEFVLE 240 >gi|229592075|ref|YP_002874194.1| hypothetical protein PFLU4673 [Pseudomonas fluorescens SBW25] gi|229363941|emb|CAY51462.1| putative outer membrane protein [Pseudomonas fluorescens SBW25] Length = 271 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI- 322 V+ I G+ D + R+N +LS DRA S VL+ G+ E RI ++ G+ + ++ Sbjct: 189 VVRIEGYADNTGGE---RENLKLSRDRAQSVADVLVDLGIDEKRI-QVEGYGDQYPVEAN 244 Query: 323 ASDPMNSANRRIDILVEDRQG 343 AS+ + NRR++I+ D +G Sbjct: 245 ASERGRAQNRRVEIVFSDAKG 265 >gi|213962352|ref|ZP_03390615.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena Capno] gi|213955018|gb|EEB66337.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena Capno] Length = 360 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 12/115 (10%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLD 290 T +FD S+ P+ +L I ++ + + + GHTD +P N+ +LS D Sbjct: 252 TILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNTGTPEHNL-----KLSQD 306 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342 RA + Q L + GVS+ R+ + G+ R ++D NRR++I +++D+Q Sbjct: 307 RADAIKQYLSRHGVSKKRL-EAKGYGQTRPIESNDTERGKEINRRVEINVIKDQQ 360 >gi|256824209|ref|YP_003148169.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Kytococcus sedentarius DSM 20547] gi|256687602|gb|ACV05404.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Kytococcus sedentarius DSM 20547] Length = 437 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 12/109 (11%) Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRA 292 PM F SS E+ V +IGE LA + + GHTD ++ + N RLS RA Sbjct: 335 PMRFPSSSDALYGESAVNAARIGEKLAGCDFDVVVVGHTD-----SVGGEVNERLSAFRA 389 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 Q L+ +GV DRI + + A IAS+ NRR++ILV Sbjct: 390 EKIAQALVVAGVDFDRIQQSNASASQ--PIASNETEDGRAKNRRVEILV 436 >gi|54307864|ref|YP_128884.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9] gi|46912290|emb|CAG19082.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9] Length = 439 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L KI L + I I GHTD P F + NW LSL RA + VL R+ Sbjct: 341 ILSKIAHTLESTNGRIMIVGHTDDKPIFTSKYPSNWHLSLARATAVANVLAMGTELRGRL 400 Query: 310 -SKISGFAHHRLKIASDPMNSANRR--IDILVEDRQG 343 + G A+ R S ++NRR ID+L + R+ Sbjct: 401 WPEGQGDANPRNPNTSKANRASNRRVEIDLLYQQRRA 437 >gi|153873003|ref|ZP_02001734.1| outer membrane protein ompA [Beggiatoa sp. PS] gi|152070531|gb|EDN68266.1| outer membrane protein ompA [Beggiatoa sp. PS] Length = 301 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 9/112 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-----RDNWRLSL 289 +F+ S++ + LQKI VL ++ ++GH+DA P+R + R N +LS Sbjct: 191 VFNTSTTTLKQASTRQLQKIASVLKMVDPTMVKVKGHSDAQPWRGRSQSESKRLNLKLSQ 250 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHH-RLKIASDP-MNSANRRIDILVE 339 RA S VL+ G ++ +++ G+ + L + + P + + NRR++I V+ Sbjct: 251 QRAESVKNVLVNEGFPKN-LTQAKGYGSNDPLVLGNSPAIWAKNRRVEIEVK 301 >gi|257125214|ref|YP_003163328.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257049153|gb|ACV38337.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 173 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 5/111 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I+ N FD +S+ E VL+K+ + ISI G+TD+ + R+ L Sbjct: 63 IVLDANALKFDFNSATIKEEYTPVLEKLKNYIESKNHKISITGYTDSKGTKEYNRE---L 119 Query: 288 SLDRAYSAYQVLMKSGVSEDRI--SKISGFAHHRLKIASDPMNSANRRIDI 336 SL RA S + L++ G++ ++I +K +G A+ ++ S NRRI+I Sbjct: 120 SLRRAESVEEKLIELGLAPEKIIETKGNGDANPIASNDTEEGRSVNRRIEI 170 >gi|163745692|ref|ZP_02153052.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45] gi|161382510|gb|EDQ06919.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45] Length = 645 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 VI + GHTD P DNW LS RA S + ++ G++ DR++ +GF ++ Sbjct: 565 VIRVDGHTDNVPLSGFGEFADNWELSQARALSVVKYMVNFLGIAPDRLAA-NGFGQYQ-P 622 Query: 322 IA---SDPMNSANRRIDI 336 +A ++ + NRRI++ Sbjct: 623 VAEGNTEAARAQNRRIEL 640 >gi|162453377|ref|YP_001615744.1| hypothetical protein sce5101 [Sorangium cellulosum 'So ce 56'] gi|161163959|emb|CAN95264.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 190 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 10/105 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F SS PLP+ V L+ + + L S+ I + G D R A N LSL RA Sbjct: 81 FAFDSSEPLPQEHVELRALVDCLRSSSLEGARIELVGRADP---RGTAAYNQDLSLRRAA 137 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 ++L+K G+ DRI+ + A + + PM S +RR+D+ Sbjct: 138 RVKEILVKEGIPADRITTRATGASE--AVGAQPMYSYGYDRRVDV 180 >gi|124005143|ref|ZP_01689985.1| outer membrane protein, putative [Microscilla marina ATCC 23134] gi|123989395|gb|EAY28956.1| outer membrane protein, putative [Microscilla marina ATCC 23134] Length = 329 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Query: 252 LQKIGEVLA----HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +++G V+ H T I I HTD+ R N RLS RA S Y LMK G++ Sbjct: 238 FEELGRVVKLLKDHPTSHILIEAHTDSDGTR---LANLRLSQQRAKSVYNYLMKQGIAAQ 294 Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 R+ + + +N A NRR +++V Sbjct: 295 RLQTRGAGELKPIAPNNTEINKARNRRFELIV 326 >gi|218892666|ref|YP_002441535.1| flagellar motor protein MotD [Pseudomonas aeruginosa LESB58] gi|218772894|emb|CAW28706.1| MotD [Pseudomonas aeruginosa LESB58] Length = 296 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 14/61 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K + + G+F++ P+R Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLT-----------GVFNQ---PDR 62 Query: 93 S 93 S Sbjct: 63 S 63 >gi|296390172|ref|ZP_06879647.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAb1] Length = 296 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE 51 >gi|284040434|ref|YP_003390364.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283819727|gb|ADB41565.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 537 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 19/153 (12%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQR--------------NTPMFDKSSSIPLPE 247 T+ + D I +G + T+ I DQ+ N FD S PE Sbjct: 385 TMRAVAKDFIAEGANIDLTQPKGYQQITDQQLKLIPIEVGSVVRLNNIFFDTGKSELRPE 444 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + L ++ L + ++ I +RGHTD + I N +LS DRA + + + G+ Sbjct: 445 SGPELDRLVTTLNDAPKMTIEVRGHTDNTGSNEI---NAKLSQDRADAVREYFISKGIEP 501 Query: 307 DRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 DRI SK G A ++ NRR++ ++ Sbjct: 502 DRIASKGFGEAKPTASNNTEEGRQQNRRVEFVI 534 >gi|15596658|ref|NP_250152.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAO1] gi|107100895|ref|ZP_01364813.1| hypothetical protein PaerPA_01001925 [Pseudomonas aeruginosa PACS2] gi|116049406|ref|YP_791791.1| flagellar motor protein MotD [Pseudomonas aeruginosa UCBPP-PA14] gi|254234559|ref|ZP_04927882.1| MotD [Pseudomonas aeruginosa C3719] gi|254239810|ref|ZP_04933132.1| MotD [Pseudomonas aeruginosa 2192] gi|313106460|ref|ZP_07792691.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016] gi|9947413|gb|AAG04850.1|AE004575_9 MotD [Pseudomonas aeruginosa PAO1] gi|3721573|dbj|BAA33552.1| ORF2 [Pseudomonas aeruginosa] gi|115584627|gb|ABJ10642.1| chemotaxis protein, MotD [Pseudomonas aeruginosa UCBPP-PA14] gi|126166490|gb|EAZ52001.1| MotD [Pseudomonas aeruginosa C3719] gi|126193188|gb|EAZ57251.1| MotD [Pseudomonas aeruginosa 2192] gi|310879193|gb|EFQ37787.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016] Length = 296 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 17 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE 51 >gi|222824332|ref|YP_002575906.1| flagellar motor component MotB [Campylobacter lari RM2100] gi|222539553|gb|ACM64654.1| flagellar motor component MotB [Campylobacter lari RM2100] Length = 244 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 25/37 (67%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 W + YADF+++L+A F+ +W I+ ++ +A++ F Sbjct: 16 WAVPYADFLSLLLALFIALWAISESNPAKTEALKTEF 52 >gi|332292401|ref|YP_004431010.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170487|gb|AEE19742.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 652 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD--RA 292 FD + P+ + L KI +L+ + I I HTDA A DN+ + L RA Sbjct: 542 FFDLNKDYIRPDAAMELNKIVTLLSQQPSIEIRIESHTDAR-----ADDNYNMELSQRRA 596 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL------KIASDPM-NSANRRIDILVE 339 S L++ G++++RI GF +L + D + + NRR + ++E Sbjct: 597 ISTKNYLIRQGIAKERILSAQGFGETQLLNDCSNGVQCDEVQHQINRRSEFIIE 650 >gi|260574902|ref|ZP_05842904.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259022907|gb|EEW26201.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 328 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 252 LQKIGEVL-AHSTEVISIRGHTDAS-PFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 LQ + + L AH I++ GHTDAS P NIA LS RA S QVL+ S GV Sbjct: 238 LQALADYLKAHPDRAIAVVGHTDASGPLAVNIA-----LSRKRAASVRQVLIDSLGVPAT 292 Query: 308 R-ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + I++ GF R ++ + NRR+++++ Q Sbjct: 293 QVIAEGVGFLVPRASNLTEAGRAQNRRVEVMLTSTQ 328 >gi|254525016|ref|ZP_05137071.1| OmpA family protein [Stenotrophomonas sp. SKA14] gi|219722607|gb|EED41132.1| OmpA family protein [Stenotrophomonas sp. SKA14] Length = 212 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%) Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRLQ L + ++ L+ G V ++ G R GI S++ N+ PE Sbjct: 60 KRLQTLEQALAGPLAAGRV--TLIDG------RIGISGSVLFALNSDQLQ-------PEG 104 Query: 249 IVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301 +L+ + LA E++ + G TD +P R R DNW LS R+ + + L+ Sbjct: 105 QELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIA 164 Query: 302 SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336 GV D + + G AS+ + NRR++I Sbjct: 165 DGVPADAVFAAAFGSEQPVSSNASEDGRARNRRVEI 200 >gi|260597012|ref|YP_003209583.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032] gi|260216189|emb|CBA29047.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032] Length = 424 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 MF ++I P+ + +++++ + + I GHTD++P R+ A N LS RA + Sbjct: 318 MFSSGAAIVRPDRVDIIRRVAAEVRRVDGAVVIIGHTDSTPIRSGAFASNQALSEKRAEA 377 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILV 338 + G++ ++I+ A IAS + S NRR++I V Sbjct: 378 VAAYFLAQGIAPEKITPKG--AGDTQPIASNHDEKGRSQNRRVEIFV 422 >gi|159185884|ref|NP_356875.2| hypothetical protein Atu3746 [Agrobacterium tumefaciens str. C58] gi|159141018|gb|AAK89660.2| flagellar motor protein [Agrobacterium tumefaciens str. C58] Length = 261 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+ A V+ + GHTD R DNW LS RA S + L+ GV +R+ +G Sbjct: 174 EIPAEINWVLRVDGHTDNVQLTGSGRYRDNWELSSARATSVVKFLISKGVPANRLVA-AG 232 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 F ++ D NRRI++ + +R Sbjct: 233 FGEYQPIAEGDSPEARQQNRRIELKLTER 261 >gi|330991015|ref|ZP_08314969.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1] gi|329761836|gb|EGG78326.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1] Length = 320 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIA 323 ++ + GH D P + NW LS RA + ++L+ G+ ++ +GF+ ++ L Sbjct: 243 ILRVDGHADRQPIHSAFPSNWELSSARAITVVKLLIAEGIDPHHLAA-TGFSDYQPLDKG 301 Query: 324 SDPMNSA-NRRIDILVEDR 341 + P A NRRI+ + DR Sbjct: 302 TTPEAFARNRRIEFRLTDR 320 >gi|256830501|ref|YP_003159229.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579677|gb|ACU90813.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 260 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 15/106 (14%) Query: 251 VLQKIGEVLAHSTEVISIRGHTD-----------ASPFRNIARDNWRLSLDRAYSAYQVL 299 +L ++ V+ S+ + + GHT A P+ + +W LSL R + Y+ Sbjct: 119 LLDRLRPVVMESSHPLGLSGHTSEGMDEFGPDYLAKPWIKVDF-SWELSLARVMAVYKYF 177 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQG 343 +++GV +++ ++ F R ++ ++ NRR++I ++ R G Sbjct: 178 IETGVEPEKL-RLEAFGRFRPRLTTEAPGERQTNRRVEITLDRRVG 222 >gi|88811500|ref|ZP_01126755.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231] gi|88791389|gb|EAR22501.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231] Length = 435 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL K+ L + + GHTD P R++ +DN+ LS RA +A + L + R+ Sbjct: 338 VLDKVAGALKQVPGRVLVVGHTDDVPIRSLRFKDNYELSRQRALNAAERLKERLDDPGRV 397 Query: 310 SKIS-GFAHHRLKIASDPMNSA-NRRIDIL 337 S + G R + P N A NRRI+I+ Sbjct: 398 SYLGVGPDQPRYRPVDTPENRARNRRIEII 427 >gi|146307821|ref|YP_001188286.1| flagellar motor protein MotD [Pseudomonas mendocina ymp] gi|145576022|gb|ABP85554.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 269 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 25/35 (71%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE 50 >gi|104782672|ref|YP_609170.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95111659|emb|CAK16380.1| putative outer membrane protein; OmpA family [Pseudomonas entomophila L48] Length = 269 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI- 322 V+ I G+TD++ DN +LS DRA + +L+ GV E RI ++ G+ + ++ Sbjct: 187 VVRIEGYTDST---GNPEDNLKLSRDRAQAVADMLVDLGVDEKRI-QVEGYGDQYPVEAN 242 Query: 323 ASDPMNSANRRIDILVEDRQG 343 AS+ + NRR++I+ D +G Sbjct: 243 ASERGRAQNRRVEIVFSDDKG 263 >gi|330828822|ref|YP_004391774.1| OmpA family protein [Aeromonas veronii B565] gi|328803958|gb|AEB49157.1| OmpA family protein [Aeromonas veronii B565] Length = 306 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 L P+S +L + L L ++ ++ LV IVK E T ++ + Sbjct: 98 LAPISGVPVL--QDGATLAKLDMQLQQSMGSLVDAGIVKLTQDENWLT------VELSSG 149 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAY 293 +F S+ P V+ + +L + +RG+TD N I R NW LS RA Sbjct: 150 LLFGSGSAFLGPNAAPVINTLSSILKPVDNYVRVRGYTDNQQINNEIYRSNWALSAARAE 209 Query: 294 SAYQVLMKSGVSEDRIS 310 + L+ G++ R++ Sbjct: 210 AVLNGLIADGIAPQRLA 226 >gi|313895933|ref|ZP_07829487.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430] gi|312975358|gb|EFR40819.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430] Length = 310 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V E + G++I + ++ +FD S+ + ++ I +L E ++I GHTD Sbjct: 117 VSTELSEDGLMIRLKEKA---LFDSGSAALQGQAEQIVPVIAALLTSLPERVTISGHTDN 173 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 P NW LS RA S + LM + ++ R S + G++ +R IAS+ Sbjct: 174 VPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-GYSEYR-PIASNDTEEGR 231 Query: 331 --NRRIDILV 338 NRR+++ + Sbjct: 232 AQNRRVEVFI 241 >gi|149370978|ref|ZP_01890573.1| outer membrane protein, OmpA family [unidentified eubacterium SCB49] gi|149355764|gb|EDM44322.1| outer membrane protein, OmpA family [unidentified eubacterium SCB49] Length = 323 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 27/173 (15%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 L E I+A K + ++ L IS+ L+ + G+ E + +S+ N +F Sbjct: 153 LELEGIIAAK-EAQMDALKNAISAALTSFEGN----GLTVEQREGKVYVSM---ENKLLF 204 Query: 238 DKSS---SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF--RNIARDNWRLSLDR 291 + S + E +V L G+VL + E+ + I GHTD P+ + + +DNW LS R Sbjct: 205 ESGSWDVNSRGREAVVAL---GKVLGDNKEIAVLIEGHTDNVPYGEKGLIKDNWDLSTKR 261 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------SANRRIDILV 338 A + +L ++ + I K + A R + A N + NRRI++++ Sbjct: 262 ATAIVAILTEN----NNIPKENLTAAGRGEYAPIASNNTSEGKAKNRRIEVVL 310 >gi|37676652|ref|NP_937048.1| hypothetical protein VVA0992 [Vibrio vulnificus YJ016] gi|37201195|dbj|BAC97018.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 442 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294 +F+ S+ + V+ K+ L + I + GHTD +P F + NW LSL RA + Sbjct: 323 LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATA 382 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR--IDILVE 339 L +G R+ G R ++++ + S NRR ID+LV+ Sbjct: 383 LTDRLASAGKLSGRVIP-EGMGDARPLVSNETVEGRSINRRVEIDLLVQ 430 >gi|325107821|ref|YP_004268889.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305] gi|324968089|gb|ADY58867.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305] Length = 280 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 270 GHTDASPF---RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--AS 324 GHTD P R NW LS +RA S L SG+SE R+ +G++ ++ + + Sbjct: 192 GHTDDQPIASARGTHPTNWHLSTNRANSVVLALKNSGISEHRMGA-AGYSLNQPLVPNTN 250 Query: 325 DPMNSANRRIDILV 338 D NRR++I V Sbjct: 251 DHSRQRNRRVEIFV 264 >gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] gi|300076456|gb|ADJ65855.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 11/109 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD + PE VL + L + ++I GHTD N D N LSL RA Sbjct: 112 FDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTD-----NTGSDAINDPLSLQRAS 166 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 L GV+ +R S I G H +A SD + NRR++I V + Sbjct: 167 RTRDYLSSRGVAANRFS-IQGRGSHEPLVANTSDANRARNRRVEIFVAE 214 >gi|307728928|ref|YP_003906152.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307583463|gb|ADN56861.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 217 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S P VL ++ + L + EVI+ + GHTD++ N LS++RA S Sbjct: 108 FDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHTDST---GQPAYNQTLSVNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 L + GV+ R+S G ++ IA ++ +ANRR++I + Sbjct: 165 VSFLEQRGVAAQRLSA-QGMGQNQ-PIADNNTEAGRAANRRVEIYL 208 >gi|315123150|ref|YP_004065156.1| hypothetical protein PSM_B0207 [Pseudoalteromonas sp. SM9913] gi|315016910|gb|ADT70247.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 426 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 25/126 (19%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 GI I+I + +F + S LP +L+K+ L + + I GHTD P I+ Sbjct: 310 GIRITINSEN---LFKQGDSQLLPSFQPILEKLALSLEGTKGRVLITGHTDDLP---IST 363 Query: 283 D----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSA 330 D NW LSL RA ++ KS + +SG K A++P+ S Sbjct: 364 DKYPSNWHLSLARATQVANLMAKS-------TNLSGRLWPEGKGAAEPIASNSDSASRSL 416 Query: 331 NRRIDI 336 NRRI+I Sbjct: 417 NRRIEI 422 >gi|303239756|ref|ZP_07326280.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] gi|302592693|gb|EFL62417.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] Length = 277 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +W + Y+D MT+L+A F+VM+ ++ TD+ K + + F Sbjct: 15 TWLLPYSDMMTLLLALFIVMFAMSKTDNAKMKEMSEQF 52 >gi|89053531|ref|YP_508982.1| hypothetical protein Jann_1040 [Jannaschia sp. CCS1] gi|88863080|gb|ABD53957.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 799 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%) Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 +I + GHTD R A +NW LS RA + + + G+ R++ +GF HR Sbjct: 719 IIRVDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAA-TGFGEHR-P 776 Query: 322 IA---SDPMNSANRRIDILVEDR 341 IA +D +ANRRI++ + +R Sbjct: 777 IAPNDTDEGQAANRRIELKLTER 799 >gi|332293247|ref|YP_004431856.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171333|gb|AEE20588.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 275 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 24/133 (18%) Query: 217 FETTRTGILISIIDQRNT-PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 E T +L + + T M SS I L + + L+ + T I I GH S Sbjct: 154 LEINETTVLFGVFFKGGTDKMLGSSSVITLRKVVRFLE------GYPTRKILITGHICCS 207 Query: 276 PFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 P R D + LS DR Y L+K+G+S R+ +R K ++P++ Sbjct: 208 PDREPQLDGYNNRTGSMTLSEDRGKMVYDYLIKNGISAGRLK-------YRGKAYTEPLD 260 Query: 329 ---SANRRIDILV 338 + NRR+++ + Sbjct: 261 WEETKNRRVEMTI 273 >gi|307718975|ref|YP_003874507.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM 6192] gi|306532700|gb|ADN02234.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM 6192] Length = 395 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 16/148 (10%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +K+ + + D + ET+ G+ I + F S++ LPE L+KI Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSALLLPEEQEKLRKIA 310 Query: 257 EVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++L+ E + + GHT +P +A LS++RA + LMK GV I Sbjct: 311 QILSRYPERDLLVEGHTALAGTPEGRLA-----LSIERAKAVADFLMKLGVRRPEQIVIR 365 Query: 314 GFAHHRLKIA---SDPMNSANRRIDILV 338 G+ R IA ++ S NRR++I + Sbjct: 366 GYGATR-PIADNTTEEGRSRNRRVEITI 392 >gi|323525137|ref|YP_004227290.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323382139|gb|ADX54230.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 217 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S P VL ++ + L + EVI+ + GHTD++ N LS++RA S Sbjct: 108 FDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHTDST---GQPAYNQTLSVNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 L + GV+ R+S G ++ IA ++ +ANRR++I + Sbjct: 165 VGFLEQRGVAPQRLSA-QGMGQNQ-PIADNSTEAGRAANRRVEIYL 208 >gi|320529440|ref|ZP_08030528.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399] gi|320138406|gb|EFW30300.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399] Length = 310 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V E + G++I + ++ +FD S+ + ++ I +L E ++I GHTD Sbjct: 117 VSTELSEDGLMIRLKEKA---LFDSGSAALQGQAEQIVPVIAALLTSLPERVTISGHTDN 173 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 P NW LS RA S + LM + ++ R S + G++ +R IAS+ Sbjct: 174 VPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-GYSEYR-PIASNDTEEGR 231 Query: 331 --NRRIDILV 338 NRR+++ + Sbjct: 232 AQNRRVEVFI 241 >gi|146282858|ref|YP_001173011.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] gi|145571063|gb|ABP80169.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] Length = 244 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V+ ++ LA + I + GHTD P + NW LS RA S + L +G+ R+ Sbjct: 148 VIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASSVVRYLQLAGIEATRL 207 Query: 310 SKISGFAHHRLKI--ASDPMNSANRRIDILVE 339 S +G+A R A + ++NRR++++++ Sbjct: 208 SA-TGYADTRPLADNADERGRASNRRVELVMQ 238 >gi|327481195|gb|AEA84505.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166] Length = 244 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V+ ++ LA + I + GHTD P + NW LS RA S + L +G+ R+ Sbjct: 148 VIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASSVVRYLQLAGIEATRL 207 Query: 310 SKISGFAHHRLKI--ASDPMNSANRRIDILVE 339 S +G+A R A + ++NRR++++++ Sbjct: 208 SA-TGYADTRPLADNADERGRASNRRVELVMQ 238 >gi|585710|sp|P37726|PORF_PSEFL RecName: Full=Outer membrane porin F; AltName: Full=Root adhesin; Flags: Precursor gi|5668610|gb|AAD45981.1| OprF [Pseudomonas fluorescens] Length = 326 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ I D N +LS RA Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----IGPDAYNQKLSQRRAD 275 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 QVL+K GV+ RI+ + G+ R A++ + NRR++ VE Sbjct: 276 RVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|296329419|ref|ZP_06871912.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153464|gb|EFG94289.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 153 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%) Query: 228 IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--N 284 ++D+R+ FDKS+ P+ +L I E + + I+I GHTD+ I + N Sbjct: 63 VLDERSLNFDFDKSNV--KPQYYDLLNNIKEFVEQNNYEITIVGHTDS-----IGSNAYN 115 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 ++LS RA S L++ G+SEDRI I + Sbjct: 116 FKLSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQ 150 >gi|325288156|ref|YP_004263946.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323610|gb|ADY31075.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 638 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 11/101 (10%) Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P + LQK+ VL + I I HTD+ R N LS +RA S + L+ GV Sbjct: 538 PRAEIELQKVLFVLKEFPKTKIKIESHTDS---RGKDAYNLELSDNRAKSTRRYLVSKGV 594 Query: 305 SEDRISKISGFAHHRLK-------IASDPMNSANRRIDILV 338 DRI +GF +LK S+ + NRR D ++ Sbjct: 595 DIDRIESANGFGELKLKNKCSNGVKCSEQEHLVNRRSDFII 635 >gi|126734135|ref|ZP_01749882.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2] gi|126717001|gb|EBA13865.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2] Length = 536 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 VI + GHTD P + +R DNW LS RA S + + + G+ R++ +GF + Sbjct: 456 VIRVDGHTDNVPIGSNSRFADNWELSQARALSVVRFMSEDLGIDPRRLAA-NGFGEFQ-- 512 Query: 322 IASDPMNSA-----NRRIDILVEDR 341 +P+N+A NRRI++ + +R Sbjct: 513 -PLNPLNTAEARAQNRRIELKLTER 536 >gi|320158759|ref|YP_004191137.1| outer membrane protein ImpK/VasF, OmpA/MotB domain [Vibrio vulnificus MO6-24/O] gi|319934071|gb|ADV88934.1| outer membrane protein ImpK/VasF OmpA/MotB domain [Vibrio vulnificus MO6-24/O] Length = 442 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294 +F+ S+ + V+ K+ L + I + GHTD +P F + NW LSL RA + Sbjct: 323 LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATA 382 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR--IDILVE 339 L +G R+ G R ++++ S NRR ID+LV+ Sbjct: 383 LTDRLASAGKLSGRVIP-EGMGEARPLVSNETAEGRSINRRVEIDLLVQ 430 >gi|254474819|ref|ZP_05088205.1| flagellar motor protein [Ruegeria sp. R11] gi|214029062|gb|EEB69897.1| flagellar motor protein [Ruegeria sp. R11] Length = 655 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 18/88 (20%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 +I + GHTD +P + DNW LS RA S + ++++ G+ +R+S +GF ++ Sbjct: 575 IIRVDGHTDDTPLGAHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQ-- 631 Query: 322 IASDPMNSA--------NRRIDILVEDR 341 P+N A NRRI++ +R Sbjct: 632 ----PVNPAETPEARAQNRRIELKFTER 655 >gi|159045480|ref|YP_001534274.1| hypothetical protein Dshi_2940 [Dinoroseobacter shibae DFL 12] gi|157913240|gb|ABV94673.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 648 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHR-L 320 V+ + GHTD P + DNW LS RA S + L++ G+ DR++ +GF ++ + Sbjct: 568 VLRVDGHTDNVPVTGGGKYADNWELSQGRALSVARFLIEDQGIPPDRLAP-TGFGEYQPV 626 Query: 321 KIASDPMNSA-NRRIDI 336 + P A NRRI++ Sbjct: 627 SLEDTPEGRALNRRIEL 643 >gi|283853398|ref|ZP_06370644.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283571211|gb|EFC19225.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 301 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 16/109 (14%) Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297 KS +PL L+ I L+ + +++ GHTD P + + NW LS RA + Sbjct: 198 KSGGLPL------LRDIAATLSGTPYRVTVEGHTDNRPIESWLYPSNWELSSARASRVAR 251 Query: 298 VLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA-------NRRIDILV 338 +L+ GV + ++ G A + + +DP + NRR+ ILV Sbjct: 252 LLIDGGVPAGHM-RVEGLADTQPVAPNTDPAGRSIAENQARNRRVVILV 299 >gi|325294742|ref|YP_004281256.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065190|gb|ADY73197.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 255 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHT---DASPFRNIARDNWRL 287 N +F +S P+ L K+ E++ + I GHT + + + D+W L Sbjct: 107 NKVLFKPNSLELTPKAKEALDKVAEIIKKLPGNYQVRIEGHTSIEEPTKYLPYIHDDWDL 166 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDILVE 339 S+ RA + + L+ GV+ +I + G+ + R L +P+ A NRR++I +E Sbjct: 167 SIRRATTVAKYLVSRGVNPKKIIAV-GYGNTRPLYTWKNPILQARNRRVEIYLE 219 >gi|323697841|ref|ZP_08109753.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457773|gb|EGB13638.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 254 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + M+ K +++L K+ +G+ AD GV+F T+ + +F ++ Sbjct: 104 VVMRIKSMVENLDNKLKEG-AGVNADR--DGVVFRTS------------SAALFQPFTAE 148 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P+ +L + +VL + +RGHTD P NW LS RA A ++ Sbjct: 149 LRPDATQILDGVIKVLKDYKLNLVVRGHTDDRPIHTAKYPSNWELSAARAAVALDYIVNK 208 Query: 303 GVSEDRISKISGFAHHRLKIASD 325 G E +K G+A R ++ +D Sbjct: 209 GGIEINRAKAVGYADTRPEVPND 231 >gi|88798977|ref|ZP_01114558.1| OmpA/MotB [Reinekea sp. MED297] gi|88778204|gb|EAR09398.1| OmpA/MotB [Reinekea sp. MED297] Length = 300 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%) Query: 250 VVLQKIGEVL-AHSTEVISIRGHTDASPF-RNIARD---NWRLSLDRAYSAYQVLMKSGV 304 VL + EVL H + + GH DA P ++A+ NW LS RA L+ GV Sbjct: 205 TVLTSLSEVLKQHPDRRVQVIGHADARPIVSDLAQTYPTNWELSSARASRVVTFLIDQGV 264 Query: 305 SEDRISKISGFAHHRLKIASDPMN-SANRRIDILVE 339 S+ R+ A+ ++ ++ + S NRRI++ ++ Sbjct: 265 SDHRLLASGRAANQPVRDGANEEDWSVNRRIEVQIQ 300 >gi|120553254|ref|YP_957605.1| flagellar motor protein MotB [Marinobacter aquaeolei VT8] gi|120323103|gb|ABM17418.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 305 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS-LDRAYSAYQVLMKSGVSEDR 308 +L + EVLA ++I GHTD P R NW LS A A +L + V+ DR Sbjct: 173 LLMDMAEVLADMPGDLAIEGHTDNVPIRTERFYSNWDLSAARAAAVANVLLAREQVTPDR 232 Query: 309 ISKISGFAHHRLKIA-SDPMNSA-NRRIDILVE 339 I +++G A ++ + P N A NRR++I+++ Sbjct: 233 I-RVTGLADTEPRVPNTSPENRAKNRRVEIVID 264 >gi|120437695|ref|YP_863381.1| thrombospondin repeat-containing OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117579845|emb|CAL68314.1| OmpA/MotB family outer membrane protein containing thrombospondin 3 repeats [Gramella forsetii KT0803] Length = 472 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 9/110 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD + + PE+ LQ I +++ +ST + I GHTD+S + N +LS +RA Sbjct: 355 TVLFDLNKATIRPESEEALQSIHDIMHEYSTTIFHIEGHTDSSGSDSY---NMKLSKERA 411 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVE 339 S L ++G+ R++ G+ + IA++ NRR++I ++ Sbjct: 412 ASVATWLEQNGIPAKRLTS-EGYGETQ-PIATNSTAKGRQDNRRVEISLD 459 >gi|218550833|ref|YP_002384624.1| outer membrane lipoprotein [Escherichia fergusonii ATCC 35469] gi|218358374|emb|CAQ91021.1| putative outer membrane lipoprotien [Escherichia fergusonii ATCC 35469] gi|324111886|gb|EGC05866.1| OmpA family protein [Escherichia fergusonii B253] gi|325499107|gb|EGC96966.1| outer membrane lipoprotein [Escherichia fergusonii ECD227] Length = 219 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR+G I I++ N FD +S+ P L + VL + +++ G Sbjct: 92 MRGTGVSVTRSGDNI-ILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEYPKTAVNVLG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 +TD++ ++ N RLS RA S L+ GV+ +RI ++ G A+ ++ + Sbjct: 151 YTDSTGGYDL---NMRLSQQRADSVASALITQGVAANRINTRGMGPANPIASNSTAEGKA 207 Query: 330 ANRRIDI 336 NRR++I Sbjct: 208 QNRRVEI 214 >gi|298529977|ref|ZP_07017379.1| peptidoglycan-associated lipoprotein [Desulfonatronospira thiodismutans ASO3-1] gi|298509351|gb|EFI33255.1| peptidoglycan-associated lipoprotein [Desulfonatronospira thiodismutans ASO3-1] Length = 200 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 LQKI E + E+ + I GHTD R A N L RA +AY+ L+ GVS DR+ Sbjct: 112 ALQKISEHMKRFDELRLVIEGHTDE---RGTAEYNLALGERRARAAYEFLVLLGVSSDRL 168 Query: 310 SKIS 313 IS Sbjct: 169 QIIS 172 >gi|289665938|ref|ZP_06487519.1| OmpA family membrane protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 438 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ L + + GHTD P R+++ +DN+ LS RA S VL +G+ + R Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLSFKDNFALSARRAESVGAVL-AAGLRDRRR 402 Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338 + SG + IA P + NRR++IL+ Sbjct: 403 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434 >gi|87121845|ref|ZP_01077731.1| flagellar motor aparatus [Marinomonas sp. MED121] gi|86162874|gb|EAQ64153.1| flagellar motor aparatus [Marinomonas sp. MED121] Length = 258 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 I+I+GHTD P R + NW LS RA + + ++ G+ R++ +G+A Sbjct: 181 INIKGHTDNIPIRTVKFPSNWELSAIRATTVLRYFLEEGIGAQRMTA-TGYA 231 >gi|330807890|ref|YP_004352352.1| hypothetical protein PSEBR_a1170 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375998|gb|AEA67348.1| Conserved hypothetical protein; putative outer membrane protein, putative OmpA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 370 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Query: 245 LPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 LP T+ ++ ++L A + I GH D S A N +LS +RA S + SG Sbjct: 182 LPVTLGPFTRVAKILEADPKTAVLILGHADTS---GAAPANLKLSQERAQSVAAIFRLSG 238 Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + DR+ + G + A+D + + NRR+++LV Sbjct: 239 LQRDRL-MLRGMGAVAPRAANDSVEGRALNRRVELLV 274 >gi|312963125|ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gi|311282636|gb|EFQ61232.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 229 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 256 GEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 G+VL H+ + R TD F + DN+ LS RA A ++L+++ + R + Sbjct: 134 GQVLVEGHTDNLPVSRPVTDYERFCTVYDDNYTLSAARAREARKLLIQAIEPQQARRVVV 193 Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336 +G+ R K DP ++ NRR+++ Sbjct: 194 AGYGDSRPKPGIDPASALNRRVEV 217 >gi|238023638|ref|YP_002907870.1| hypothetical protein bglu_2g01470 [Burkholderia glumae BGR1] gi|237878303|gb|ACR30635.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 438 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS L+ D I +G L T S + R MF S PE VL K+ +A Sbjct: 301 LSVLLKDEIARGEL--TVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARV 358 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRL 320 + + G+TD+ P DN LS RA VL G +RI I G A Sbjct: 359 GGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSIGKGDAQPVA 418 Query: 321 KIASDPMNSANRRIDILV 338 A+ S NRR+++LV Sbjct: 419 DNATPQGRSRNRRVEVLV 436 >gi|163742880|ref|ZP_02150264.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10] gi|161383844|gb|EDQ08229.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10] Length = 655 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 18/88 (20%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 +I + GHTD +P + DNW LS RA S + ++++ G+ +R+S +GF ++ Sbjct: 575 IIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQ-- 631 Query: 322 IASDPMNSA--------NRRIDILVEDR 341 P+N A NRRI++ +R Sbjct: 632 ----PVNPAPTAVARAQNRRIELKFTER 655 >gi|153837220|ref|ZP_01989887.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|260366108|ref|ZP_05778568.1| flagellar motor protein [Vibrio parahaemolyticus K5030] gi|260879749|ref|ZP_05892104.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034] gi|260896795|ref|ZP_05905291.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466] gi|260903584|ref|ZP_05911979.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037] gi|149749483|gb|EDM60237.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|308087342|gb|EFO37037.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466] gi|308092264|gb|EFO41959.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034] gi|308109501|gb|EFO47041.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037] gi|308114754|gb|EFO52294.1| flagellar motor protein [Vibrio parahaemolyticus K5030] Length = 430 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A++IS L+ + ++V E + + IS+ Q +F+ S+ + V+ K Sbjct: 287 IAERISMYLATEIGKDLVT---VEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 340 Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKI 312 + L + I I GHTD P F + NW LSL RA S + L+ + + R I + Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIPEG 400 Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336 G A ++ S+ + NRRI+I Sbjct: 401 LGDARPLVENDSEKNRAMNRRIEI 424 >gi|302326566|gb|ADL25767.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 215 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 GI++S+ D +FD + + + L KI +L+ + +SI G+TD + Sbjct: 97 GIILSMSD----ILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGNTDNTGSEEF- 151 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 N LS RA + + L++ G++E R++ G + IA + NRR+D+++ Sbjct: 152 --NMTLSQQRAENVMKFLVEQGIAETRLTA-KGLGMT-MPIADNSTKEGRQKNRRVDLVI 207 Query: 339 EDR 341 DR Sbjct: 208 TDR 210 >gi|190574725|ref|YP_001972570.1| hypothetical protein Smlt2808 [Stenotrophomonas maltophilia K279a] gi|190012647|emb|CAQ46275.1| putative OmpA family membrane protein [Stenotrophomonas maltophilia K279a] Length = 212 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 24/156 (15%) Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRLQ L + ++ L+ G V +V G R GI S++ N+ PE Sbjct: 60 KRLQTLEQALAGPLAAGRV--TLVDG------RIGISGSVLFALNSDQLQ-------PEG 104 Query: 249 IVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301 +L+ + LA E++ + G TD +P R R DNW LS R+ + + L+ Sbjct: 105 QELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIA 164 Query: 302 SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336 GV D + + G A++ + NRR++I Sbjct: 165 DGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200 >gi|325286152|ref|YP_004261942.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321606|gb|ADY29071.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 452 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 14/138 (10%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAH 261 ++G VA+N V E + + D T +FD SSI T V++ I + + Sbjct: 321 VAGTVANNGCPEVTEEVQK-----KLNDYARTILFDTGKSSIKAESTAVMVDIITILKEY 375 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++ GHTD+ + N +LS RA S + L++ G+ E R+S + G+ + Sbjct: 376 PNAKFTVEGHTDSVGSATL---NQKLSESRALSVKEFLVEKGIGEFRLSAV-GYGEDK-P 430 Query: 322 IASDPMNSA---NRRIDI 336 IA++ + NRR++I Sbjct: 431 IATNKTRAGRKQNRRVEI 448 >gi|91975492|ref|YP_568151.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91681948|gb|ABE38250.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 217 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ P L+ +G+ L S ++ + GHTDA + N LS RA Sbjct: 107 FDYNSAALTPRAEPQLKSLGDALISSDLKDSIVMLAGHTDAKGGDDY---NQTLSERRAE 163 Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 S + L+ + + D + + G+ +LK SDP+ + NRR+ I+ Sbjct: 164 SVKRYLIDRYSIRPDHLVAV-GYGKKQLKDPSDPLGAENRRVQIV 207 >gi|332716479|ref|YP_004443945.1| Flagellar motor protein [Agrobacterium sp. H13-3] gi|325063164|gb|ADY66854.1| Flagellar motor protein [Agrobacterium sp. H13-3] Length = 343 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ + GHTD R DNW LS RA S + L+ GV +R+ +GF ++ Sbjct: 264 VLRVDGHTDNVQLSGSGRFRDNWELSSARATSVVKFLISKGVPANRLVA-AGFGEYQPIA 322 Query: 323 ASDP--MNSANRRIDILVEDR 341 D NRRI++ + +R Sbjct: 323 EGDTPEARQQNRRIELKLTER 343 >gi|284035326|ref|YP_003385256.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283814619|gb|ADB36457.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 399 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD+SS + PE+ L ++ VL S T I IRGHTD + N +LS DR + Sbjct: 297 FDQSSPVLRPESSTELDQLAAVLLESPTTKIEIRGHTDN---QGDFDSNVKLSRDRCQAV 353 Query: 296 YQVLMKSGVSEDRISKI 312 L G++++R+ + Sbjct: 354 IDYLASKGIAKNRLKAV 370 >gi|84500108|ref|ZP_00998374.1| flagellar motor protein [Oceanicola batsensis HTCC2597] gi|84392042|gb|EAQ04310.1| flagellar motor protein [Oceanicola batsensis HTCC2597] Length = 852 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 V+ + GHTD P +DNW LS RA S + + G DR++ +GF H+ Sbjct: 772 VLRVDGHTDDVPLSGQGEFQDNWELSQARALSVVRYMEDFLGFPPDRLAA-NGFGEHQ-P 829 Query: 322 IA---SDPMNSANRRIDI 336 IA S+ +ANRRI++ Sbjct: 830 IASGDSEAARAANRRIEL 847 >gi|255744684|ref|ZP_05418635.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101] gi|262161183|ref|ZP_06030294.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1] gi|262168686|ref|ZP_06036381.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27] gi|255737715|gb|EET93109.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101] gi|262022804|gb|EEY41510.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27] gi|262028933|gb|EEY47586.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1] Length = 294 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 29/149 (19%) Query: 207 VADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 VA++I K + E + I + + Q R F + S+ P+ ++++I E++ Sbjct: 135 VAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFPEGSAFLQPKFRPLVRQIAELVK 194 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + GHTD + R NW LS RA S Q + K+ F H R Sbjct: 195 DIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ----------EMEKVKDFDHLR 244 Query: 320 LKIA----SDPMN--------SANRRIDI 336 L++ + P+ + NRR++I Sbjct: 245 LQVRGLADTQPLGPNDTEAQRATNRRVEI 273 >gi|121596298|ref|YP_988194.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42] gi|222112527|ref|YP_002554791.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY] gi|120608378|gb|ABM44118.1| OmpA/MotB domain protein [Acidovorax sp. JS42] gi|221731971|gb|ACM34791.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY] Length = 216 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 11/98 (11%) Query: 251 VLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E L ++ TEV I GHTD++ I N LSLDRA S L GV+ +R Sbjct: 123 ILDRFAEGLRNNPNTEV-RIVGHTDSTGSDAI---NNPLSLDRAESTRNYLTARGVNGNR 178 Query: 309 ISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQG 343 I + G R +AS+ + NRR++I V +RQG Sbjct: 179 I-HVEGRG-SREPVASNDTSDGRARNRRVEIYVGERQG 214 >gi|332519368|ref|ZP_08395835.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045216|gb|EGI81409.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 370 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ +I + +I L K+ L + + I I GHTD +A+ N LSL RA S Sbjct: 265 LFEFDKAILVNTSIEELDKLNLHLKENKNLNIEIYGHTDNI---GLAKRNQELSLQRAKS 321 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVEDR 341 + L+ G+ ++RI GF + +K +S+ + NRR++ + D+ Sbjct: 322 VSEYLISKGLKKERIQWF-GFGSSKPLVKNSSEDNRAKNRRVEFKLIDK 369 >gi|213961761|ref|ZP_03390027.1| OmpA family protein [Capnocytophaga sputigena Capno] gi|213955550|gb|EEB66866.1| OmpA family protein [Capnocytophaga sputigena Capno] Length = 290 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 VL+K+ +V+ + + + GHTD + RDNW LS+ RA +VL K GV+ + Sbjct: 174 VLEKVAKVVKNKPDFEFMVEGHTDNVNIKTGCIRDNWDLSVMRATEIVRVLQKDFGVAPE 233 Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 R++ + L D A NRR I+V Sbjct: 234 RMTAAGRSYYVPLASNGDANGRALNRRTRIVV 265 >gi|28900895|ref|NP_800550.1| hypothetical protein VPA1040 [Vibrio parahaemolyticus RIMD 2210633] gi|28809341|dbj|BAC62383.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 433 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A++IS L+ + ++V E + + IS+ Q +F+ S+ + V+ K Sbjct: 290 IAERISMYLATEIGKDLVT---VEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 343 Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKI 312 + L + I I GHTD P F + NW LSL RA S + L+ + + R I + Sbjct: 344 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIPEG 403 Query: 313 SGFAHHRLKIASDPMNSANRRIDI 336 G A ++ S+ + NRRI+I Sbjct: 404 LGDARPLVENDSEKNRAMNRRIEI 427 >gi|229090688|ref|ZP_04221921.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] gi|228692630|gb|EEL46356.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] Length = 126 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 TG+ + I+D +FD + PE ++ ++ I + GHTD+ P N Sbjct: 8 TGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDK 64 Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILV 338 NW LS RA + L++ +D+ G+A + + +D P N NRR+ I + Sbjct: 65 FPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 124 Query: 339 ED 340 ++ Sbjct: 125 KE 126 >gi|315223432|ref|ZP_07865289.1| OmpA family protein [Capnocytophaga ochracea F0287] gi|314946605|gb|EFS98596.1| OmpA family protein [Capnocytophaga ochracea F0287] Length = 290 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 VL+K+ +V+ + + + GHTD + + RDNW LS+ RA +VL K GV+ + Sbjct: 174 VLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKDFGVAPE 233 Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 R++ + L D A NRR I+V Sbjct: 234 RMTAAGRSYYVPLASNGDANGRALNRRTRIVV 265 >gi|256028784|ref|ZP_05442618.1| Outer membrane protein [Fusobacterium sp. D11] Length = 191 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 ++D+R+ FD SI + +L+ I E + + I+I GHTD+ N+ L Sbjct: 64 VLDERSLN-FDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDSIGSNQY---NFGL 119 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDRQG 343 S RA + L++ G++EDRI I + IA++ + NRR++ + R+ Sbjct: 120 SRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQREA 177 >gi|83593142|ref|YP_426894.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|83576056|gb|ABC22607.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 21/175 (12%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 +E I + + K +++L ++ + L +++V + G++I ++ ++ Sbjct: 59 QESIGSREVTKPIEELRQQTGDVIKSLQVEDVVG---LGQDQQGLVIEFA---SSAFYEP 112 Query: 240 SSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYS 294 S+ P I VL+++ L + I I+GHTD P N A+ NW LS RA Sbjct: 113 GSADIRPTAIPVLEQVIATLNEPRYQGFQIEIQGHTDDIPI-NTAQYPSNWELSGARATR 171 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSA-NRRIDILVEDR 341 + ++ GV+++R+ I+ +A K+ + P+N NRRI + V R Sbjct: 172 VLRFMLDQGVAKERVLAIA-YADVAPKVPNRTPEGQAIPLNQELNRRIAVRVFPR 225 >gi|296274015|ref|YP_003656646.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098189|gb|ADG94139.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299] Length = 256 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 266 ISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I I G+TD S F++ I RD W LS RA S + L+K+ + ++ K+S ++ +R K Sbjct: 165 IEIIGYTDRSNFKSDTIPRDGWDLSALRAISVVKELIKNRIDPAQL-KVSAYSSYRPKSE 223 Query: 324 SDPMNSANRRIDI 336 + NRR++I Sbjct: 224 N---AVENRRVEI 233 >gi|163737814|ref|ZP_02145231.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis BS107] gi|161389340|gb|EDQ13692.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis BS107] Length = 655 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 18/88 (20%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 +I + GHTD +P + DNW LS RA S + ++++ G+ +R+S +GF ++ Sbjct: 575 IIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQ-- 631 Query: 322 IASDPMNSA--------NRRIDILVEDR 341 P+N A NRRI++ +R Sbjct: 632 ----PVNPAPTAVARAQNRRIELKFTER 655 >gi|109947291|ref|YP_664519.1| flagellar motor protein MotB [Helicobacter acinonychis str. Sheeba] gi|109714512|emb|CAJ99520.1| flagellar motor rotation protein MotB [Helicobacter acinonychis str. Sheeba] Length = 253 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 266 ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 I++RG TD +P + + ++ L+ +RAY +VLM+ GV D++S Sbjct: 158 INVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLMQYGVDPDQLS 203 >gi|83310388|ref|YP_420652.1| hypothetical protein amb1289 [Magnetospirillum magneticum AMB-1] gi|82945229|dbj|BAE50093.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1] Length = 333 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 16/86 (18%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 V+ + GHTD P + NW LS RA + + L GV DR++ +GF + Sbjct: 255 VLRVDGHTDKRPITSGKFPSNWELSTARAITVLRALAADGVPRDRLAA-AGFGEFQ---- 309 Query: 324 SDPMNSA--------NRRIDILVEDR 341 P++S NRRI+I + R Sbjct: 310 --PVDSGNTEAAYAKNRRIEIRFDQR 333 >gi|89889933|ref|ZP_01201444.1| putative outer membrane protein, ompA family [Flavobacteria bacterium BBFL7] gi|89518206|gb|EAS20862.1| putative outer membrane protein, ompA family [Flavobacteria bacterium BBFL7] Length = 457 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD + E+ VL I +L + T SI GHTD+ A+ N RLS RA Sbjct: 352 TILFDTGKATIKAESAKVLSDITAILKKYPTAKFSIDGHTDSV---GSAKLNQRLSDSRA 408 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 L+ +G+ E R+S + G+ R +A + + NRR++I Sbjct: 409 NEVKNYLVANGIDEFRLSSV-GYGEAR-PVADNKTKTGRAQNRRVEI 453 >gi|317153382|ref|YP_004121430.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943633|gb|ADU62684.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 254 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRN 279 ++G+++ N+ MF + S+ P+ L+ + + + + I GHTD+ +P + Sbjct: 129 KSGVMLRF---NNSAMFQRGSAELSPQAKPALEVVIAGMENKNFNLVINGHTDSETPESD 185 Query: 280 IARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + NW LS RA + + +L S +S +R+ + G+A + + S + NR+I+ V Sbjct: 186 LYTSNWELSAARAATCLRYILTHSDISANRMKAV-GYAGAKPIVPS--TSEENRQINRRV 242 Query: 339 E 339 E Sbjct: 243 E 243 >gi|319763880|ref|YP_004127817.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|330823856|ref|YP_004387159.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|317118441|gb|ADV00930.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] gi|329309228|gb|AEB83643.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 171 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 11/108 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTD--ASPFRNIARDNWRLSLDRA 292 +FD +S E +L ++G L + + GH D SP N RLSL RA Sbjct: 67 LFDFNSDAMTGERREMLVRMGHALVGVGVRALRVEGHADDQGSP-----DYNERLSLRRA 121 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 + QVL ++G+ +RI I G+ R + S+ NRR+ ++V Sbjct: 122 QAVAQVLAEAGIPRERID-IRGYGASRPLVIGTSEAARQENRRVALIV 168 >gi|325982315|ref|YP_004294717.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531834|gb|ADZ26555.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 277 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 13/128 (10%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278 T G++I++ N +F + + + +QK+ + L T+ + I GHTD + Sbjct: 153 TERGLVITL----NDVLFRTNMAQLEANGVRTVQKLADFLRQYTQHKVLIEGHTDNTGSH 208 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRID 335 + N LS RA + L+ SG+S DR++ G+ L IA + NRR++ Sbjct: 209 HY---NQELSERRANAVKMALLNSGISNDRVAS-RGYG-ETLPIAGNDTAEHRQLNRRVE 263 Query: 336 ILVEDRQG 343 I++ D G Sbjct: 264 IILSDENG 271 >gi|315225274|ref|ZP_07867091.1| OmpA domain protein [Capnocytophaga ochracea F0287] gi|314944957|gb|EFS96989.1| OmpA domain protein [Capnocytophaga ochracea F0287] Length = 360 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLD 290 T +FD S+ P+ +L I ++ + + + GHTD +P N+ +LS D Sbjct: 252 TILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNTGTPEHNL-----KLSQD 306 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI-LVEDRQ 342 RA + Q L + GVS+ R+ G+ R I S+ NRR++I +V+D Q Sbjct: 307 RADAIKQYLSRHGVSKKRLDA-KGYGQTR-PIESNETERGKEINRRVEINVVKDNQ 360 >gi|332521842|ref|ZP_08398291.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332042514|gb|EGI78716.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 282 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 13/94 (13%) Query: 257 EVLAHSTEVIS--------IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E+LA VI+ + GHTD P+ + +DNW LS+ R+ S + L + GV Sbjct: 168 EILAKVATVINGKPNFEAMVEGHTDNVPYNRGGVLQDNWDLSVKRSTSIVRALQELGVKP 227 Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 +++ +G H +++D + NRR I + Sbjct: 228 EQLIA-AGRGDHLPLVSNDTAENRAINRRTKIYI 260 >gi|289766688|ref|ZP_06526066.1| outer membrane protein [Fusobacterium sp. D11] gi|289718243|gb|EFD82255.1| outer membrane protein [Fusobacterium sp. D11] Length = 180 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 ++D+R+ FD SI + +L+ I E + + I+I GHTD+ N+ L Sbjct: 53 VLDERSLN-FDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDSIGSNQY---NFGL 108 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVEDRQG 343 S RA + L++ G++EDRI I + IA++ + NRR++ + R+ Sbjct: 109 SRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQ-PIATNATKEGRAQNRRVEFKLVQREA 166 >gi|170693231|ref|ZP_02884391.1| type IV / VI secretion system protein, DotU family [Burkholderia graminis C4D1M] gi|170141761|gb|EDT09929.1| type IV / VI secretion system protein, DotU family [Burkholderia graminis C4D1M] Length = 446 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F + LP+ I +L+++ L + + GHTD P ++ +DN+ LS RA + Sbjct: 337 LFPSGGADLLPDEIPLLRRVASALNQVRGRVIVVGHTDDQPVHSLRFKDNFALSTARAQN 396 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-NRRIDIL 337 VL + R+ + + +D P N A NRR++IL Sbjct: 397 TLAVLAQGLDDPRRLEANGAGSSQPIATPADLPANRARNRRVEIL 441 >gi|313201307|ref|YP_004039965.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312440623|gb|ADQ84729.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 222 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S P VL + L A+ ++I GHTD N D N LSL+RA Sbjct: 111 FDSGKSDIKPNFRPVLDSFAQSLVANPATKVTIVGHTD-----NTGTDAVNNPLSLNRAN 165 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDILVEDRQG 343 A L+ GV+ R + +H L + SD + NRR++I V + Q Sbjct: 166 HARDYLVTRGVASSRFTTEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216 >gi|83589634|ref|YP_429643.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] gi|83572548|gb|ABC19100.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] Length = 256 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRL 287 +D + +FD + PE +L K+ +L+ + + G+TD P + NW L Sbjct: 126 LDIKERILFDSGRADLKPEARQLLDKLSGLLSRLPNEVKVEGYTDNRPIHTVQFPTNWEL 185 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 S RA + ++ + DR I +H L P + A NRR+ +L+ Sbjct: 186 STARAARVVRYFIEEHHLQPDRFMAIGYGEYHPLYPNDSPEHMAENRRVVLLL 238 >gi|77464614|ref|YP_354118.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1] gi|126463454|ref|YP_001044568.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|332559507|ref|ZP_08413829.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] gi|77389032|gb|ABA80217.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1] gi|126105118|gb|ABN77796.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332277219|gb|EGJ22534.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 228 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 +L + I++ GHTD++ A N LS+ RA S VL+ +GV R+S I Sbjct: 146 LLRYPNSTIAVVGHTDST---GAAAYNQDLSMRRAQSVAGVLIGNGVPSYRVSAIGRGED 202 Query: 318 HRLKIASDPMNSA-NRRIDILV 338 + P A NRR+DI++ Sbjct: 203 QPIASNLTPEGRAQNRRVDIII 224 >gi|227115434|ref|ZP_03829090.1| putative porin [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 505 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASP 276 T G++ + D + MFD +S+ + + ++KI + + VI + GHTDA+ Sbjct: 108 TETVGLVAQVQD---SGMFDTNSAQLSTDGLRQVKKIATAMKEGDQSGVILVVGHTDAT- 163 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRID 335 A N RLS RA + +VL ++G+S ++ + +G A A+ +ANRR++ Sbjct: 164 --GSAEWNQRLSEQRAQNVGRVLEQAGLSAQKLYFQGAGSARPVADNATVTGRTANRRVE 221 Query: 336 IL 337 I+ Sbjct: 222 IV 223 >gi|218679284|ref|ZP_03527181.1| flagellar motor protein MotB [Rhizobium etli CIAT 894] Length = 200 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + +K+ + L +I+ + G VA + +G+ + G+L+SI DQ + MF+ S++P Sbjct: 137 AQEQKQAEQLQAEIAQQIGG-VAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPR 195 Query: 246 PETIV 250 E ++ Sbjct: 196 QEMVL 200 >gi|237728863|ref|ZP_04559344.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2] gi|226909485|gb|EEH95403.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2] Length = 220 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR+G I I++ N FD SS+ P L + VL ++ +++ G Sbjct: 92 MQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYNKTAVNVLG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 TD++ +++ N RLS RA S L+ GV+ +RI ++ G A+ ++ + Sbjct: 151 FTDSTGSQDL---NMRLSQQRADSVASALITQGVAANRIRTQGMGPANPIASNSTAEGKA 207 Query: 330 ANRRIDILVEDRQ 342 NRR++I + Q Sbjct: 208 QNRRVEITLSPIQ 220 >gi|253999219|ref|YP_003051282.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4] gi|253985898|gb|ACT50755.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] Length = 222 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S P VL + L A+ ++I GHTD N D N LSL+RA Sbjct: 111 FDSGKSDIKPNFRPVLDSFAQSLVANPATRVTIVGHTD-----NTGTDAVNNPLSLNRAN 165 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDILVEDRQG 343 A L+ GV+ R + +H L + SD + NRR++I V + Q Sbjct: 166 HARDYLVTRGVASSRFTTEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216 >gi|27366879|ref|NP_762406.1| flagellar motor protein [Vibrio vulnificus CMCP6] gi|27358446|gb|AAO07396.1|AE016809_158 Flagellar motor protein [Vibrio vulnificus CMCP6] Length = 442 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294 +F+ S+ + V+ K+ L + I + GHTD +P F + NW LSL RA + Sbjct: 323 LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATA 382 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR--IDILVE 339 L +G R+ G R ++++ S NRR ID+LV+ Sbjct: 383 LTDRLASAGKLSGRVIP-EGMGDARPLVSNETAEGRSINRRVEIDLLVQ 430 >gi|296114560|ref|ZP_06833213.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC 23769] gi|295978916|gb|EFG85641.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC 23769] Length = 321 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 23/122 (18%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--------VISIRGHTDASPFRNIARDNWRL 287 +F S+ PE I ++ +G L + ++ + GH D P NW L Sbjct: 207 LFPVGSADLSPEGIQEIKVLGRTLKQVAQQIPPSVPWILRVDGHADRLPIHTAFPSNWEL 266 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDILVE 339 S RA + ++L+ G+S ++ +GFA + P+++ NRRI+ + Sbjct: 267 SSARAITVVKMLIADGISPRHLAA-TGFADFQ------PLDNGTTAEAFARNRRIEFRLT 319 Query: 340 DR 341 DR Sbjct: 320 DR 321 >gi|154252545|ref|YP_001413369.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156495|gb|ABS63712.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1] Length = 338 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322 V+ + GHTDA+P NW LS RA + L++ GV ++R+ +GF +H L Sbjct: 260 VLRVDGHTDANPIATAQFPSNWYLSSARAIAVVNYLVERGVPQNRLVA-AGFGQYHPLAD 318 Query: 323 ASDPM-NSANRRIDILVEDR 341 N NRRI+ + +R Sbjct: 319 GRGTAENRRNRRIEFKLTER 338 >gi|329297799|ref|ZP_08255135.1| putative outer membrane lipoprotein [Plautia stali symbiont] Length = 177 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 10/129 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR G I +++ N FD SS+ P L + VL + +++ G Sbjct: 49 MRGTGVSVTRQGDNI-VLNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYPKAAVNVVG 107 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TD++ R + N RLS RA S L+ GV+++R+ + G +AS+ + Sbjct: 108 FTDSTGTRAL---NMRLSQQRAESVASALIVQGVAQNRL-RTQGMGPDN-PVASNSTEAG 162 Query: 331 ---NRRIDI 336 NRR++I Sbjct: 163 KAQNRRVEI 171 >gi|312962474|ref|ZP_07776965.1| Outer membrane porin F [Pseudomonas fluorescens WH6] gi|311283401|gb|EFQ61991.1| Outer membrane porin F [Pseudomonas fluorescens WH6] Length = 326 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD ++ P + ++ + + +A + + + GHTD+ + D N +LS RA Sbjct: 221 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 275 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 + QVL+K GV+ R++ + G+ R A++ + NRR++ VE Sbjct: 276 AVKQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|261417296|ref|YP_003250979.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373752|gb|ACX76497.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325429|gb|ADL24630.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 659 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 34/177 (19%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI----------LISI-IDQRNTPM- 236 K + D K T SG V D++ G L + + G+ L + +DQ P+ Sbjct: 485 KDGIADFKDKCPGTPSGHVVDSL--GCLPDFDKDGVPDVLDKCPNTLPGVRVDQNGCPLN 542 Query: 237 -------------FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282 F +S+ + L I E++ E + ++GHTD + + Sbjct: 543 KKEDLDQLKKGINFKTASARLTKSSYGTLDDIAELMIKIPEANLEVQGHTDN---KGSEK 599 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSA-NRRIDIL 337 N +LS DRA + + L+K GV++DR+ + +G+ + + +D A NRR++++ Sbjct: 600 RNKKLSEDRAAAVVKYLVKKGVAKDRL-RAAGYGSEKPIADNTDAAGRAQNRRVELV 655 >gi|71907729|ref|YP_285316.1| hypothetical protein Daro_2103 [Dechloromonas aromatica RCB] gi|71847350|gb|AAZ46846.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 214 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 Q I L S +++ + G TD P R R DNW LS RA + + L+ GV I Sbjct: 112 QPIAAYLGASEQMLMVSGFTDDMPVRGSNRQFADNWELSAQRALTVTRTLIDDGVPASSI 171 Query: 310 SKISGFAHHRLKI-ASDPMNSANRRIDI 336 + A + A+ + NRR+++ Sbjct: 172 FAAAFGAQQPVADNAAAEGRARNRRVEM 199 >gi|153006608|ref|YP_001380933.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030181|gb|ABS27949.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 440 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%) Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 LP++ +L ++ +VL + ISI GHTD+ + N RLS RA + L+ G Sbjct: 344 LPDSFPLLNQVVQVLRDFPNMQISIEGHTDSVGGEAL---NMRLSQQRAEAVLDYLISKG 400 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 VS +R+ I GF + IAS+ S NRR + + Sbjct: 401 VSPERLEAI-GFGPTK-PIASNKTASGRARNRRTEFRI 436 >gi|319952094|ref|YP_004163361.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319420754|gb|ADV47863.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 370 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIAS 324 + + GHTDA + N LS RA + L+KSG+S++RIS K GF + Sbjct: 284 VYLYGHTDA---MGSVKYNDDLSEKRAATVASFLVKSGLSKNRISWKGFGFKKPVVSNEK 340 Query: 325 DPMNSANRRIDILVEDRQG 343 + + NRR++ LV + Q Sbjct: 341 EDIRFKNRRVEFLVAEPQS 359 >gi|256819872|ref|YP_003141151.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581455|gb|ACU92590.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 360 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD--ASPFRNIARDNWRLSLD 290 T +FD S+ P+ +L I ++ + + + GHTD +P N+ +LS D Sbjct: 252 TILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNTGTPEHNL-----KLSQD 306 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI-LVEDRQ 342 RA + Q L + GVS+ R+ G+ R I S+ NRR++I +V+D Q Sbjct: 307 RADAIKQYLSRHGVSKKRLDA-KGYGQTR-PIESNETERGKEINRRVEINVVKDNQ 360 >gi|220921404|ref|YP_002496705.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946010|gb|ACL56402.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 213 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 251 VLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSE 306 V++ +G LA ++ +I I GHTDA + R N LS RA + Q ++++ GV Sbjct: 116 VVKMLGATLARPQLASSIILIVGHTDA---KGSDRVNQLLSERRAEAVKQYIVQNYGVPA 172 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRI 334 + + G+ RLK ++P+ ANRR+ Sbjct: 173 GNLVAV-GYGKSRLKDPANPLAPANRRV 199 >gi|254462550|ref|ZP_05075966.1| flagellar MotB protein [Rhodobacterales bacterium HTCC2083] gi|206679139|gb|EDZ43626.1| flagellar MotB protein [Rhodobacteraceae bacterium HTCC2083] Length = 411 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 266 ISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD P F + RDNW L+ RA S Q + + +R + + R Sbjct: 331 VVVAGHTDNVPIGFGALYRDNWDLAAARAASVVQEIEGLNLVPEREMSATSYGEARPIAD 390 Query: 324 SDPMNS--ANRRIDILVEDRQ 342 +D NRRI+I +E +Q Sbjct: 391 NDTPEGREKNRRIEIEIEFKQ 411 >gi|312131420|ref|YP_003998760.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311907966|gb|ADQ18407.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 532 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 30/179 (16%) Query: 177 PLSKEKILAMKRKKR---------LQDLAKKISSTLSGLVADNIVKGVLFETT--RTGIL 225 P++ E + + KR L ++K I T+ G + + G ET + G Sbjct: 364 PITGEYKIVLPYGKRYSIRPESDNLLGVSKSIDLTIPGQYKE--ITGQDLETAPIKAGTA 421 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 I++ N F+ + + E+ + L ++ +L + + I ++GHTD N+ DN Sbjct: 422 ITL----NNVFFEFAKATLEKESFLELDRLIALLVKNPNMAIEVQGHTD-----NVGSDN 472 Query: 285 --WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 RLS RA + ++ G++ DRI+ +GF R +AS+ NRR++ ++ Sbjct: 473 ANMRLSQQRADAVKAYFVEKGIATDRITS-TGFGESR-PVASNETTEGQAKNRRVEFVI 529 >gi|330752331|emb|CBL87285.1| protein with similarity to outer membrane OmpA family protein [uncultured Flavobacteria bacterium] Length = 266 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%) Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 A+ I + GH ++ RN N LS RA + + L+K G+ E R+S I GF + + Sbjct: 186 AYPNLKILVEGHVNSPGKRN-TNTNQVLSTQRAEAVVKYLIKKGIRESRLSFI-GFGNTK 243 Query: 320 LKIASDPMN---SANRRIDILVE 339 + + + NRR++ILV+ Sbjct: 244 MIYPNTKLEYEMQFNRRVEILVQ 266 >gi|152972417|ref|YP_001337563.1| putative outer membrane lipoprotein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578997|ref|YP_002236080.1| OmpA family protein [Klebsiella pneumoniae 342] gi|238897010|ref|YP_002921755.1| putative outer membrane lipoprotein [Klebsiella pneumoniae NTUH-K2044] gi|262040618|ref|ZP_06013856.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288933077|ref|YP_003437136.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|290511871|ref|ZP_06551239.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55] gi|329999890|ref|ZP_08303557.1| OmpA family protein [Klebsiella sp. MS 92-3] gi|150957266|gb|ABR79296.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568055|gb|ACI09831.1| OmpA family protein [Klebsiella pneumoniae 342] gi|238549337|dbj|BAH65688.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041982|gb|EEW43015.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288887806|gb|ADC56124.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|289775661|gb|EFD83661.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55] gi|328538172|gb|EGF64327.1| OmpA family protein [Klebsiella sp. MS 92-3] Length = 220 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR G I +++ N FD +S+ P L + VL + +++ G Sbjct: 92 MQGTGVSVTRNGDNI-VLNMPNNVTFDSNSANLKPAGANTLTGVAMVLKEYEKTAVNVVG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD++ +++ N RLS RA S L+ GV+ +RI + +G IAS+ Sbjct: 151 YTDSTGSKDL---NMRLSQQRADSVASALITQGVAANRI-RTTGMGPAN-PIASNSTAEG 205 Query: 328 NSANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 206 KAQNRRVEITLSPLQ 220 >gi|119476926|ref|ZP_01617207.1| ompA family protein [marine gamma proteobacterium HTCC2143] gi|119449733|gb|EAW30970.1| ompA family protein [marine gamma proteobacterium HTCC2143] Length = 213 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL+ +G VLA E ++ + GHTD + N RLS DRA S LM GV +R+ Sbjct: 123 VLESVGLVLAKYNETMMRVTGHTDNTGGEQY---NQRLSEDRAQSVASNLMSQGVDGNRL 179 Query: 310 SKISGFAHHRLKIASDPMNSA---NRRIDILV 338 I G + + IA + +S NRR+++ + Sbjct: 180 -YIQG-SGETMPIADNNTSSGRASNRRVELYI 209 >gi|261417272|ref|YP_003250955.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373728|gb|ACX76473.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 294 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 GI++S+ D +FD + + + L KI +L+ + +SI G+TD + Sbjct: 176 GIILSMSD----ILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGNTDNTGSEEF- 230 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340 N LS RA + + L++ G++E R+ +K G ++ NRR+D+++ D Sbjct: 231 --NMTLSQQRAENVMKFLVEQGIAETRLTAKGLGMTMPIADNSTKEGRQKNRRVDLVITD 288 Query: 341 R 341 R Sbjct: 289 R 289 >gi|347153|gb|AAC36899.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 11/104 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ + D N +LS RA Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPDTNVEVAGHTDS-----VGPDAYNQKLSQRRAD 272 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335 + QVL+K GV+ RI+ + G+ R A++ + NRR++ Sbjct: 273 AVKQVLVKDGVAPSRITSV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|330831642|ref|YP_004394594.1| outer membrane lipoprotein [Aeromonas veronii B565] gi|328806778|gb|AEB51977.1| Outer membrane lipoprotein [Aeromonas veronii B565] Length = 218 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G + I++ N FD SSS L + V+A + +++ G Sbjct: 90 LQGTGVSVTRNGNEL-ILNMPNNVTFDSSSSQLKAAGANTLSGVAMVVAEFDKTRLNVVG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD++ R++ N +LS DRA + L+ GV+ RIS + S A Sbjct: 149 HTDSTGSRDL---NMKLSRDRADAVAAQLIGQGVAGSRISTTGVGPDQPVATNSTAAGKA 205 Query: 331 -NRRIDI 336 NRR+ I Sbjct: 206 QNRRVTI 212 >gi|46579053|ref|YP_009861.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough] gi|120603363|ref|YP_967763.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46448466|gb|AAS95120.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough] gi|120563592|gb|ABM29336.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311232899|gb|ADP85753.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 257 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 8/165 (4%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNT 234 P ++ ++L ++ + +++ L LV + I K + GI + + + Sbjct: 87 PTTESQVLITEKLDAAEQEQLEVARMLKELVNEQAEIAKNAIISAEEGGINLRV---NSR 143 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAY 293 +F+ S+ LP+ V++ + +L + + GHT + PF + +W LS RA Sbjct: 144 ALFEPGSARLLPDGEAVIRLVHTILLKHKYDLIVEGHTGSREPFSSQFPTHWELSAARAV 203 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDIL 337 + + ++ GVS R+ + G+ R L +D NRR++ Sbjct: 204 TLVRHILSLGVSPRRLKAV-GYGDTRPLVPENDDTGELNRRVEFF 247 >gi|226944060|ref|YP_002799133.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii DJ] gi|226718987|gb|ACO78158.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii DJ] Length = 215 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 VKG FE R G L+ + ++ S+ L T+ L ++ ++ A EV + + G Sbjct: 62 VKGSQFEVERRGDLLVVTAPVDSSFNPDRPSMLLVATLGPLSRVAKLAAQDREVAVLLLG 121 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNS 329 H D+S A RLS +RA S + SG+ DR+ K G R A+ S Sbjct: 122 HGDSS---GSAELTNRLSQERAQSMAAIFRMSGLHHDRLMYKGMGSDVPRSSNANKDGRS 178 Query: 330 ANRRIDILVEDR 341 NRR+++ + R Sbjct: 179 LNRRVEMYLTTR 190 >gi|189912837|ref|YP_001964392.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777513|gb|ABZ95814.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 423 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 11/131 (8%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 +N+V+ L ET + L S+ +R + + SSIPL + L + +S + + I Sbjct: 300 ENLVQKKLEETKKIS-LDSVYFERASSVLKSESSIPLDSIVDYLHE------NSDQKMKI 352 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPM 327 GHTD + DN LS +RA S Q L+ GV +R +++ G ++ + Sbjct: 353 IGHTDLT---GTYDDNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEAS 409 Query: 328 NSANRRIDILV 338 + NRR + ++ Sbjct: 410 SKKNRRTEFVL 420 >gi|90023231|ref|YP_529058.1| HAD family hydrolase [Saccharophagus degradans 2-40] gi|89952831|gb|ABD82846.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 380 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS+ PE ++K+ + +A + V+ I GHTD R A N LS RA + Sbjct: 269 FDSNSSVVKPEYFAEIRKVADFMAQYENSVVVIEGHTDT---RGAAAYNKSLSQKRADAV 325 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS---ANRRI 334 VL+ V++ R++ + G+ + IA + ANRR+ Sbjct: 326 AAVLVSEMNVAKRRVTSV-GYGEEQ-PIADESTREGLVANRRV 366 >gi|326795346|ref|YP_004313166.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326546110|gb|ADZ91330.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 254 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%) Query: 266 ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 ISI+GHTD P N R NW LS RA + + ++ G+ +R++ +G+A + Sbjct: 173 ISIKGHTDNIPI-NTTRFPSNWELSAIRATTTLRYFLEKGIPPERMTA-TGYADVIPLVP 230 Query: 324 SD-PMNSA-NRRIDILVE 339 +D P + A NRR + +++ Sbjct: 231 NDTPEHRAQNRRAEFVLQ 248 >gi|91202869|emb|CAJ72508.1| similar to flagellar motor protein MotB [Candidatus Kuenenia stuttgartiensis] Length = 223 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 266 ISIRGHTDASPF---RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLK 321 + I GHTD+ P +++ N LS RA S + L K G + E RI I+GF +R Sbjct: 130 LRIDGHTDSDPIIKTKHLWDSNHHLSAARALSVFHFLTKKGNIPEQRI-HIAGFGPNR-P 187 Query: 322 IASDPMNSA---NRRIDILV 338 IA + + NRR++ L+ Sbjct: 188 IAPNTTPAGKKENRRVEFLI 207 >gi|256820420|ref|YP_003141699.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582003|gb|ACU93138.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 290 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 VL+K+ +V+ + + + GHTD + + RDNW LS+ RA +VL K GV+ + Sbjct: 174 VLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKDFGVAPE 233 Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 R++ + L D A NRR I++ Sbjct: 234 RMTAAGRSYYVPLASNGDANGRALNRRTRIVI 265 >gi|224370727|ref|YP_002604891.1| MotB3 [Desulfobacterium autotrophicum HRM2] gi|223693444|gb|ACN16727.1| MotB3 [Desulfobacterium autotrophicum HRM2] Length = 272 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYS 294 FD + P+ L++IG +L ++ V+++ GHTD P NW LS RA Sbjct: 147 FFDLGKADLKPQAQWRLRQIGRILQENSFVVNVIGHTDDMPNHSEQYPTNWELSTARACR 206 Query: 295 AYQVLMKSG-VSEDRISKISGFAH-HRLKIASDPMN-SANRRIDILV 338 + L+K + E+R +SG A L+ + N S NRR++I++ Sbjct: 207 VARFLIKEAQLPEERFF-VSGHAWLQPLRPNNTAHNRSLNRRVEIVL 252 >gi|126662535|ref|ZP_01733534.1| OmpA family protein [Flavobacteria bacterium BAL38] gi|126625914|gb|EAZ96603.1| OmpA family protein [Flavobacteria bacterium BAL38] Length = 621 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 14/124 (11%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T + IL I + N + L + + V+ + E+ VI + HTD+ R Sbjct: 505 TEKEVILQPIFFEFNKSNITADGAAELDKLVAVMNEYPEM------VIFAKSHTDS---R 555 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRI 334 N +LS RA S Q L+ GV+++RIS GF K+A ++ ++ NRR Sbjct: 556 GSDSYNIKLSDRRAKSTVQYLISKGVAKERISG-QGFGESEPKVACKSCTEEEHAQNRRS 614 Query: 335 DILV 338 + L+ Sbjct: 615 EFLI 618 >gi|120436663|ref|YP_862349.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578813|emb|CAL67282.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 281 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 37/180 (20%) Query: 180 KEKILAMKRKKRLQDLAKK-------ISSTLSGLVAD--------NIVKGVLFETTRTGI 224 KEK LA++ +QD K + ++L G + D N+ KGV++ Sbjct: 95 KEKDLAIRS---MQDAMNKKDSVTLALVTSLKGALGDLSDEDIEINVEKGVVY------- 144 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIAR 282 +SI D+ +FD P VL K+ V+ + + + GHTD ++ Sbjct: 145 -VSISDK---LLFDSGRYNIKPRAKEVLGKVATVVKNKPNIEFMVEGHTDDQAISTSMFE 200 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338 DNW LS+ RA S +VL G+ R++ +G +++ + +AS+ + NRR I+V Sbjct: 201 DNWDLSVKRATSVVRVLQDDFGIEPARMTA-AGRSYY-IPVASNETAEGRAKNRRTRIVV 258 >gi|86359723|ref|YP_471614.1| hypothetical protein RHE_PA00018 [Rhizobium etli CFN 42] gi|86283825|gb|ABC92887.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 572 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +++ S PLP +VV+ +I + +A + + G+ P R +A + S+ +A Sbjct: 246 LYEDVDSSPLPRQMVVMDRISQRMAKAKSGPVVHGYMGFDPLREVAFRKGKSSVSSLATA 305 Query: 296 YQVLMKSGVSEDRISKISGF 315 + LMK G ++ GF Sbjct: 306 HSALMKHGFIGIKLYPPMGF 325 >gi|332882653|ref|ZP_08450265.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679453|gb|EGJ52438.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 290 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 39/218 (17%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N+QQ H +LT ++KG + +LEKS+ +EK L +K L+D Sbjct: 72 NNQQLIHNMGNLTTLTQKGAE-----NLEKSLES---------LREKDLTIKN---LRDA 114 Query: 196 AKKISSTLSGLVADNIVKGVL---------FETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + S LV +KGVL + + + I+I D+ +F S Sbjct: 115 VTRRDSVNLALVQS--LKGVLGNLDDQDVDIKVEKGVVFINISDKM---LFSSGSYTISK 169 Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-G 303 VL+K+ +V+ + + + GHTD + + RDNW LS+ RA +VL G Sbjct: 170 NAKNVLEKVAKVVKNKPDFEFMVEGHTDDVRIKKDCIRDNWDLSVMRATEIVRVLQNDFG 229 Query: 304 VSEDRISKISGFAHHRLKIASDPM---NSANRRIDILV 338 ++ +R++ +G +++ + +AS+ + NRR I+V Sbjct: 230 IAPERMTA-AGRSYY-VPVASNTTAEGRAQNRRTRIVV 265 >gi|115376920|ref|ZP_01464141.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|310825376|ref|YP_003957734.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|115366099|gb|EAU65113.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|309398448|gb|ADO75907.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 374 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%) Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 LP L ++ E L + ++I GHTDA + R N LS RA L+ GV Sbjct: 266 LPSARSKLSEVAEALKPTHNRLTIEGHTDA---QGADRFNEDLSFRRAERVRNFLVSQGV 322 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVE 339 + +R+ ++ G +R +AS+ NRR++I+++ Sbjct: 323 AANRV-EVRGLGEYR-PVASNSTAEGRANNRRVEIILQ 358 >gi|302339235|ref|YP_003804441.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301636420|gb|ADK81847.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 340 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +T F S+ PE+ L +I +L + I GHT R + LSL RA Sbjct: 236 STLSFKPDSAELTPESGEELSRIASILKKKRIEVEIAGHTADVGDRA---SQYTLSLQRA 292 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 S + L+ GV E R+S + G+ R ++D + NRR++ LV Sbjct: 293 ESVKRTLVSLGVKERRLS-VKGYGGSRPIASNDSQEGRAQNRRVEFLV 339 >gi|183222805|ref|YP_001840801.1| hypothetical protein LEPBI_I3466 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781227|gb|ABZ99525.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 461 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 11/131 (8%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 +N+V+ L ET + L S+ +R + + SSIPL + L + +S + + I Sbjct: 338 ENLVQKKLEETKKIS-LDSVYFERASSVLKSESSIPLDSIVDYLHE------NSDQKMKI 390 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPM 327 GHTD + DN LS +RA S Q L+ GV +R +++ G ++ + Sbjct: 391 IGHTDLT---GTYDDNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEAS 447 Query: 328 NSANRRIDILV 338 + NRR + ++ Sbjct: 448 SKKNRRTEFVL 458 >gi|325927851|ref|ZP_08189076.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas perforans 91-118] gi|325541841|gb|EGD13358.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas perforans 91-118] Length = 368 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 MF S+ + +L+++ L + + GHTD P R++ +DN+ LS RA S Sbjct: 259 MFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAQS 318 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338 VL +G+ + R + SG A IA P + NRR++IL+ Sbjct: 319 VGAVL-AAGLRDPRRVQTSG-AGDSQPIALPPQLPGNRARNRRVEILL 364 >gi|86132374|ref|ZP_01050968.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85816935|gb|EAQ38119.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 650 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%) Query: 186 MKRKKRLQDLAKKISST--LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++ K A+ I+ T +SG V +++ +L + + G ++ I + N FD Sbjct: 489 IRGAKETYSGAEAITKTPDVSGTVTNDLELSLLQKPIKVGDDLAKILELNPIYFDFDRFN 548 Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLD--RAYSAYQVLM 300 P+ + L+K+ V+ + VI +R HTD+ D++ LSL RA S ++ Sbjct: 549 IRPDAALELEKVLAVMREYPNMVIDVRSHTDSR-----GNDSYNLSLSDKRAKSTVNYII 603 Query: 301 KSGVSEDRISKISGFAHHRLK-------IASDPMNSANRRIDILV 338 G+S RIS G+ +L S+ + NRR + +V Sbjct: 604 AEGISSSRISG-RGYGETQLTNECSNGVQCSEEAHQLNRRSEFIV 647 >gi|78047693|ref|YP_363868.1| OmpA family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036123|emb|CAJ23814.1| OmpA family membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 438 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ L + + GHTD P R++ +DN+ LS RA S VL +G+ + R Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRR 402 Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338 + SG A IA P + NRR++IL+ Sbjct: 403 VQTSG-AGDSQPIALPPQLPGNRARNRRVEILL 434 >gi|150024426|ref|YP_001295252.1| OmpA family outer membrane protein [Flavobacterium psychrophilum JIP02/86] gi|150025241|ref|YP_001296067.1| OmpA family outer membrane protein [Flavobacterium psychrophilum JIP02/86] gi|149770967|emb|CAL42434.1| Probable outer membrane protein, OmpA family [Flavobacterium psychrophilum JIP02/86] gi|149771782|emb|CAL43256.1| Probable outer membrane protein, OmpA family [Flavobacterium psychrophilum JIP02/86] Length = 644 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ + V L KI VL + T I IR HTD+ R A N LS RA S Sbjct: 536 FDLNKSVIRKDASVELAKILTVLNLNPTIKIDIRSHTDS---RQTAAYNMSLSDRRAKST 592 Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSA------NRRIDILV 338 + L++ G+S DR++ G+ +L SD +N NRR + ++ Sbjct: 593 IEWLVQKGISPDRLTG-RGYGESQLVNECSDGVNCTGEQHQLNRRSEFII 641 >gi|170720335|ref|YP_001748023.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169758338|gb|ACA71654.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 327 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 245 LPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 LP ++ + ++ + + + + GH D S A N +LSL+RA S + SG Sbjct: 140 LPMSLGPITRVAKAVEGDPKTAVLVLGHADTS---GAAATNQKLSLERAASVSAIFRLSG 196 Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + DR+S + G + A+D + + NRR+++L+ Sbjct: 197 LKRDRLS-LKGMGSEMPRAANDSVEGRALNRRVEMLL 232 >gi|125974911|ref|YP_001038821.1| OmpA/MotB [Clostridium thermocellum ATCC 27405] gi|281418623|ref|ZP_06249642.1| OmpA/MotB domain protein [Clostridium thermocellum JW20] gi|125715136|gb|ABN53628.1| OmpA/MotB [Clostridium thermocellum ATCC 27405] gi|281407707|gb|EFB37966.1| OmpA/MotB domain protein [Clostridium thermocellum JW20] Length = 266 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS-- 242 A K ++++D ++ + + + D VK + + + T + S+I +FD + Sbjct: 113 ADKEAQKIEDFINEVQNIVEEMDLDEYVKVIEDDKSLTVRMNSVI------LFDLGKADI 166 Query: 243 -IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300 P ET L+KIG ++ + I+GHTD P + NW LS RA + L+ Sbjct: 167 KEPGKET---LRKIGTLIKQLNKNAVIQGHTDNLPINTMLFPTNWELSTKRATNVVLFLV 223 Query: 301 -KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 + GV +++ +G R +D + NRRIDI++E Sbjct: 224 DECGVDPVKLTA-TGNGEFRPIAPNDTEENRQKNRRIDIVIE 264 >gi|119385179|ref|YP_916235.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans PD1222] gi|119374946|gb|ABL70539.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222] Length = 463 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 20/134 (14%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFR 278 +G+++ ++ + +F + + P +++ IG + AH +++ GHTD P + Sbjct: 337 SGLVVLVVRASDPEVFRSAKASLNPAYQPLVEAIGRTVVANAHRIGAVAVSGHTDNVPVQ 396 Query: 279 --NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-------- 328 N N LS RA + Q L +GV + IS A R S P+ Sbjct: 397 RSNPFASNQGLSEARAETVAQALAAAGVPAELIS-----AEGRAD--SQPVGDNATRDGR 449 Query: 329 SANRRIDILVEDRQ 342 + NRRI+I +E RQ Sbjct: 450 AQNRRIEIRIEKRQ 463 >gi|171060845|ref|YP_001793194.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170778290|gb|ACB36429.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 229 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S P + VL K+ + L + +V I GHTD+S + N LSLDRA + Sbjct: 125 FDVGRSAVKPVMVPVLDKLAQGLDATVQVQVI-GHTDSSGSDAV---NNPLSLDRAEAVR 180 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA-NRRIDILVEDRQ 342 L + GV RI ++ G R +A + P A NRR++I + + Q Sbjct: 181 DYLSRHGVPAARI-QVEGRG-EREPVADNATPDGRAQNRRVEIFLREPQ 227 >gi|283835926|ref|ZP_06355667.1| OmpA family protein [Citrobacter youngae ATCC 29220] gi|291068103|gb|EFE06212.1| OmpA family protein [Citrobacter youngae ATCC 29220] Length = 220 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRG 270 ++G TR+G I I++ N FD +SS P L + VL + +++ G Sbjct: 92 MQGTGVSVTRSGDNI-ILNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEYDKTAVNVLG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNS 329 TD++ +++ N RLS RA S L+ GV+ +RI ++ G A+ ++ + Sbjct: 151 FTDSTGSQDL---NMRLSQQRADSVASALITQGVAANRIRTQGMGPANPIASNSTAEGKA 207 Query: 330 ANRRIDILVEDRQ 342 NRR++I + Q Sbjct: 208 QNRRVEITLSPVQ 220 >gi|285017932|ref|YP_003375643.1| hypothetical protein XALc_1141 [Xanthomonas albilineans GPE PC73] gi|283473150|emb|CBA15656.1| hypothetical protein XALc_1141 [Xanthomonas albilineans] Length = 231 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 13/108 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD + S P+ L + + L+ ++ +I + GHTD NI D N RLS RA Sbjct: 126 FDFNQSTLKPQFYSALNGVAKTLSEYNQTMIEVVGHTD-----NIGSDAVNQRLSEQRAS 180 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 S L GV +RI + A + IA ++ + NRR++I V Sbjct: 181 SVAAYLTAQGVQPERIQTLG--AGKKYPIADNSTEAGRAQNRRVEIRV 226 >gi|308270955|emb|CBX27565.1| hypothetical protein N47_H23870 [uncultured Desulfobacterium sp.] Length = 229 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 9/107 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ +SS P L ++ +V+ + I + GHTD++ A N +LS RA + Sbjct: 123 LYAVNSSTLFPGAYDELDRVAKVINQYPDTRIQVGGHTDST---GSAEYNQKLSEQRAQA 179 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 L+ GV+ RIS I G+ ++ IAS+ + NRR++I + Sbjct: 180 VKNALVSRGVNASRISAI-GYGENK-SIASNETEAGRQQNRRVEIRI 224 >gi|323697842|ref|ZP_08109754.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457774|gb|EGB13639.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 250 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFRN 279 ++G+++ + Q +FDK S E LQ + + + + + IRGHTD +P Sbjct: 125 KSGVMLRLSSQL---LFDKGSVELTAEAKQALQMVIDSMKQTDFNLVIRGHTDGETPESV 181 Query: 280 IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 NW LS RA S + +++ S + R+ + G + L S+ ANRR++ Sbjct: 182 QYGSNWSLSAARAASCLRYIIEHSDIPATRMKAVGYGGSKPLLPGTSEENRQANRRVEFF 241 >gi|303240000|ref|ZP_07326522.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] gi|302592479|gb|EFL62205.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] Length = 261 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 9/155 (5%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++K + + +++ + +SGL D V V +T +++ I + +FD + Sbjct: 112 KQKAITEFKEEVQALISGLKIDEYVHVV---DVKTSVILRI---DSAILFDVGKADIKES 165 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L+K+GE++ I++ GHTD P ++ NW LS RA + L+ Sbjct: 166 GKDTLKKVGELMDKLNTNIAVMGHTDNIPINTSLFPSNWELSTRRATNVVVFLVNECNLN 225 Query: 307 DRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 +G R +D + NRR+DI+++ Sbjct: 226 PTKLTATGNGEFRPIAPNDSEENRQKNRRVDIVID 260 >gi|347159|gb|AAC36902.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 11/104 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ I D N +LS RA Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----IGPDAYNQKLSQRRAD 272 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335 + QVL+K GV+ RI+ + G+ R A++ + NRR++ Sbjct: 273 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|311696900|gb|ADP99773.1| flagellar motor protein MotB [marine bacterium HP15] Length = 307 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 11/96 (11%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSEDR 308 +L + EV+ ++I GHTD P R + NW LS R+ + VL+ + V R Sbjct: 173 LLLDMAEVIEGIPGDLTIEGHTDNVPIRTDRFYSNWDLSAARSAAVANVLVARDQVEPTR 232 Query: 309 ISKISGFAHHRLKIASDPMNSA-----NRRIDILVE 339 +S ++G A + ++ P SA NRR++I+++ Sbjct: 233 LS-VTGLADTKPRV---PNTSAENRAKNRRVEIIID 264 >gi|167035280|ref|YP_001670511.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861768|gb|ABZ00176.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 325 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 245 LPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 LP T+ + ++ + V + + GH D+S A N +LSL+RA S + SG Sbjct: 140 LPMTLGPITRVAKTVEGDPKTAVLVLGHADSS---GAAAANQKLSLERAASVSAIFRLSG 196 Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + DR++ + G + A+D S NRR+++L+ Sbjct: 197 LQRDRLT-LKGMGSVMPRAANDSAEGRSLNRRVEMLL 232 >gi|319955585|ref|YP_004166852.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319424245|gb|ADV51354.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 275 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 7/84 (8%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFR 278 +T ++I+I D+ +F+ S + +L+KI +V+ S EV+ + GHTD+ + Sbjct: 141 KTVVMINISDKL---LFNSGSYTVSNKANNILKKIADVINSEPSMEVM-VEGHTDSRTIQ 196 Query: 279 N-IARDNWRLSLDRAYSAYQVLMK 301 + +DNW LS+ RA S ++L K Sbjct: 197 TPMFQDNWDLSVKRATSVVRILQK 220 >gi|15618690|ref|NP_224976.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae CWL029] gi|15836314|ref|NP_300838.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae J138] gi|16752260|ref|NP_445628.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae AR39] gi|33242140|ref|NP_877081.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila pneumoniae TW-183] gi|4377090|gb|AAD18919.1| Peptidoglycan-Associated Lipoprotein [Chlamydophila pneumoniae CWL029] gi|7190005|gb|AAF38862.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae AR39] gi|8979154|dbj|BAA98989.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae J138] gi|33236650|gb|AAP98738.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila pneumoniae TW-183] Length = 192 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 RN S +I E + +L + + + + + I GHTD R A N L Sbjct: 84 RNITFATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDE---RGAASYNLALGAR 140 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 RA + + L K G+S DR+S IS H L + + NRR + + R Sbjct: 141 RANAIKEHLRKQGISADRLSTISYGKEHPLNSGHNELAWQQNRRTEFKIHAR 192 >gi|332877182|ref|ZP_08444932.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684925|gb|EGJ57772.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 284 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 17/133 (12%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHSTEV-ISI 268 ++KGV++ IS+ D M KS S + E L KI +++ E + I Sbjct: 141 VLKGVVY--------ISLADN----MLYKSGSYEISERAGETLSKIAKIIMDYKEYEVLI 188 Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 G+TD P R R+NW LS RA S Q L + GV R++ ++ + P Sbjct: 189 EGNTDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLTAAGRGEYNPVASNDTP 248 Query: 327 MNSA-NRRIDILV 338 NRR I++ Sbjct: 249 EGKMRNRRTQIII 261 >gi|116249829|ref|YP_765667.1| hypothetical protein RL0063 [Rhizobium leguminosarum bv. viciae 3841] gi|115254477|emb|CAK05551.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 418 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I GHTDAS A N RLSL+RA + L++ GV+ DR+ ++ A IAS+ Sbjct: 111 LRIVGHTDAS---GNAETNERLSLERANAIKAALVERGVNTDRL--LAAGAGQTRPIASN 165 Query: 326 PMNSA---NRRIDIL 337 NRR++++ Sbjct: 166 ETAEGKALNRRVELV 180 >gi|77457455|ref|YP_346960.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77381458|gb|ABA72971.1| putative outer membrane protein [Pseudomonas fluorescens Pf0-1] Length = 364 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 245 LPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 LP T+ ++ ++L A + + GH+D + A N +LS +RA + + SG Sbjct: 180 LPVTLGPFTRVAKILEADPKTAVLVLGHSDTT---GAAPANVKLSQERAQAVAAIFRLSG 236 Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + DR+ + G + A+D + + NRR+++LV Sbjct: 237 LQRDRL-MLRGMGSEAPRAANDSVEGRALNRRVELLV 272 >gi|224367491|ref|YP_002601654.1| OmpA1 [Desulfobacterium autotrophicum HRM2] gi|223690207|gb|ACN13490.1| OmpA1 [Desulfobacterium autotrophicum HRM2] Length = 374 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SI P L K+ +VL + + I+GHTD+ R + N LSL RA + Sbjct: 271 FDFDKSIIKPAGFEFLDKVVDVLKSRPALFVKIQGHTDSIGTR---KYNDALSLRRAKAV 327 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDI 336 L+ G+ ++R+S GFA + +AS+ + NRR+++ Sbjct: 328 KTYLINKGIDKNRLS-CEGFAFSK-PVASNKTAEGRAMNRRVEL 369 >gi|221640526|ref|YP_002526788.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161307|gb|ACM02287.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 228 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 +L + I++ GHTD++ A N LS+ RA S VL+ +GV R+S I Sbjct: 146 LLRYPNSTIAVVGHTDST---GSAAYNQDLSMRRAQSVAGVLIGNGVPSYRVSAIGRGED 202 Query: 318 HRLKIASDPMNSA-NRRIDILV 338 + P A NRR+DI++ Sbjct: 203 QPIASNLTPEGRAQNRRVDIII 224 >gi|313205304|ref|YP_004043961.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312444620|gb|ADQ80976.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 294 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN-IARDNWRLSLDRAY 293 +F S+ + I ++ + +VL + E+ I + GHTD P + + +DNW LS+ RA Sbjct: 174 LFKSGSAAIESKGIDAIKVLADVLNKNAEIDILVEGHTDNIPIKTALYQDNWDLSVARAI 233 Query: 294 SAYQVLMKSGVSEDRISKI------SGFAHHRLKIASDPMNSANRRIDILV 338 S ++L +E RI+ G R A+ ++NRR +I++ Sbjct: 234 SIVRIL----TNEYRIAPTRLTASGKGEFSPRASNATPEGRASNRRTEIIL 280 >gi|242280306|ref|YP_002992435.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242123200|gb|ACS80896.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 250 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 259 LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++H + I+I+G+TD + + +R DNW +S RA + + LMK G+ +R++ Sbjct: 161 ISHPDQYINIKGYTDDTQPSSKSRLKDNWEISSLRAVNVLRYLMKLGIKPNRLT 214 >gi|289668951|ref|ZP_06490026.1| OmpA family protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ L + + GHTD P R++ +DN+ LS RA S VL +G+ + R Sbjct: 106 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRR 164 Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338 + SG + IA P + NRR++IL+ Sbjct: 165 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 196 >gi|254787924|ref|YP_003075353.1| OmpA/MotB domain-containing protein [Teredinibacter turnerae T7901] gi|237683974|gb|ACR11238.1| OmpA/MotB domain protein [Teredinibacter turnerae T7901] Length = 304 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 22/159 (13%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +A+ R +++ A +++S L + V + + G++I++ D +F S Sbjct: 149 MAVARANSMEEKASQMASKL---------ESVTTKLDKRGLVITMGD----ILFATDESE 195 Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + L+K+ ++LA + I + G TD++ A N LS RA + + L+ + Sbjct: 196 VKPGAVRTLEKVSDLLAEYPDREILVEGFTDST---GAADYNKNLSERRAEAVVKQLVDN 252 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 G++EDR+S G+ +AS+ + NRR++++V Sbjct: 253 GLAEDRLS-AKGYGEE-YPVASNDTAAGRQQNRRVELVV 289 >gi|56698398|ref|YP_168771.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680135|gb|AAV96801.1| OmpA domain protein [Ruegeria pomeroyi DSS-3] Length = 221 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWR 286 I+ N FD SS P LQK+ L + + + GHTD+ A N Sbjct: 108 IVSVPNDITFDTDSSTVRPGLRSDLQKVAAHLVRYPQSSVQVIGHTDSD---GEAAYNQG 164 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSA-NRRIDILVEDR 341 LS RA + +L GV+ DRIS + G + IAS+ P A NRR++I+V R Sbjct: 165 LSERRAGAVADILQAGGVTYDRISTL-GMGENS-PIASNLTPEGKARNRRVEIVVIPR 220 >gi|288801975|ref|ZP_06407416.1| lipoprotein PG3 [Prevotella melaninogenica D18] gi|288335410|gb|EFC73844.1| lipoprotein PG3 [Prevotella melaninogenica D18] Length = 225 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 ++I+G+TDAS NI N LS RA + L GVS +I + GF I + Sbjct: 142 VAIQGYTDASGNDNI---NLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGSAN-PIENK 197 Query: 326 PMNSANRRIDILV 338 ++ ANRR+++ + Sbjct: 198 TISQANRRVEVYL 210 >gi|302347069|ref|YP_003815367.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] gi|302150976|gb|ADK97237.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] Length = 225 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 ++I+G+TDAS NI N LS RA + L GVS +I + GF I + Sbjct: 142 VAIQGYTDASGNDNI---NLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGSAN-PIENK 197 Query: 326 PMNSANRRIDILV 338 ++ ANRR+++ + Sbjct: 198 TVSQANRRVEVYL 210 >gi|326799849|ref|YP_004317668.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326550613|gb|ADZ78998.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 302 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 23/136 (16%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEV-ISI 268 ++KGV++ IS+ D M KS S + P L KI +++ E + I Sbjct: 149 VLKGVVY--------ISLSDN----MLYKSGSYEISPAAGETLGKIAKIIMDYKEYEVLI 196 Query: 269 RGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325 G+TD P +NI R+NW LS RA S Q L GV R++ +G IAS+ Sbjct: 197 EGNTDNVPISQKNI-RNNWDLSALRASSVVQALQNDYGVDPKRLT--AGGRGEYNPIASN 253 Query: 326 PMNSA---NRRIDILV 338 + NRR I++ Sbjct: 254 DTEAGRTRNRRTQIII 269 >gi|117621479|ref|YP_855927.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562886|gb|ABK39834.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 308 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL + +L + +RG+TD N I R NW LS RA + L+ G++ R+ Sbjct: 166 VLNTLSSILKQVDNYVRVRGYTDNQQINNEIFRSNWTLSAARAEAVLTALIAKGIAPQRL 225 Query: 310 S 310 + Sbjct: 226 A 226 >gi|254491010|ref|ZP_05104191.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224463523|gb|EEF79791.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 263 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL I E LA + + GH+D P R+ R NW LS RA S L++ Sbjct: 168 VLSLIAETLAELDDTFIVSGHSDNVPLRSGNYRSNWELSGARATSVVHALLRHPKLVPSQ 227 Query: 310 SKISGFAHHRLKIASDPM--NSANRRIDI 336 +I +A + ++D + NRR++I Sbjct: 228 FRIEAYADTQPVESNDTAAGRATNRRVEI 256 >gi|119896572|ref|YP_931785.1| hypothetical protein azo0281 [Azoarcus sp. BH72] gi|119668985|emb|CAL92898.1| conserved hypothetical outer membrane protein [Azoarcus sp. BH72] Length = 214 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 259 LAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGV 304 LA E++ + G TD P R+ R DNW LS RA + +VL++ GV Sbjct: 118 LASHDEMLMVSGFTDDRPVRDSNRQFADNWELSAQRALTVTRVLVEEGV 166 >gi|256833230|ref|YP_003161957.1| OmpA/MotB domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686761|gb|ACV09654.1| OmpA/MotB domain protein [Jonesia denitrificans DSM 20603] Length = 305 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 16/165 (9%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLS--GLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 K+ A + LQ LA +I + L GL V + G+++ ++ + +F Sbjct: 124 KDMAAAQAEYENLQSLADRIDAALRKRGLEG-----SVEYRINERGLIVGLV---SDELF 175 Query: 238 DKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 ++ + L +T V+ +L +SI GH ++ N + NW LS DRA Sbjct: 176 FQADTARLTKTTERVVDTTARILRELDNELSIEGHANSLQSVNY-KSNWELSSDRATQVL 234 Query: 297 QVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 + ++ G +S RI+ + GF R +D NRR+DI++ Sbjct: 235 RRYVEKGKISGTRIAAV-GFGDTRPLADNDTKRGLKINRRVDIVI 278 >gi|84624549|ref|YP_451921.1| hypothetical protein XOO_2892 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368489|dbj|BAE69647.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 438 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 MF S+ + +L+++ L + + GHTD P R++ +DN+ LS RA S Sbjct: 329 MFPSGSAELDADQTYLLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAES 388 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338 VL +G+ + R + SG + IA P + NRR++IL+ Sbjct: 389 VGAVL-AAGLRDRRRVQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434 >gi|117922218|ref|YP_871410.1| chemotaxis protein MotB-like protein [Shewanella sp. ANA-3] gi|117614550|gb|ABK50004.1| chemotaxis protein MotB-related protein [Shewanella sp. ANA-3] Length = 243 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 14/87 (16%) Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-----------KI 312 + + + GHTD++ + NW LS DRA S +++ ++S + Sbjct: 139 DTVFVEGHTDSNGIWYRGKGNWGLSTDRAVSIWKLWQTEINVAPKLSVLTNYNGQLLFSV 198 Query: 313 SGFAHHR---LKIASDPMNSANRRIDI 336 SG+A R L+ ++ + NRRIDI Sbjct: 199 SGYADTRRVDLQETTEEQRARNRRIDI 225 >gi|330998481|ref|ZP_08322305.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] gi|329568587|gb|EGG50392.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] Length = 292 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 17/133 (12%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI-VVLQKIGEVLAHSTEV-ISI 268 ++KGV++ IS+ D M KS S + E L KI +++ E + I Sbjct: 149 VLKGVVY--------ISLADN----MLYKSGSYEISERAGETLSKIAKIIMDYKEYEVLI 196 Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 G+TD P R R+NW LS RA S Q L + GV R++ ++ + P Sbjct: 197 EGNTDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLTAAGRGEYNPVASNDTP 256 Query: 327 MNSA-NRRIDILV 338 NRR I++ Sbjct: 257 EGKMRNRRTQIII 269 >gi|182680245|ref|YP_001834391.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636128|gb|ACB96902.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 345 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%) Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 V+ + GHTD +++ NW LS+ RA + L GV DR++ +GF + Sbjct: 267 VMRVDGHTDKKQIKSVQFPSNWELSVARALAVVHYLTDKGVPPDRLAA-AGFGSFQ---P 322 Query: 324 SDPMNSA-----NRRIDILVEDR 341 DP +S NRRI++ + ++ Sbjct: 323 LDPGDSEEALKRNRRIELKITEK 345 >gi|149919675|ref|ZP_01908153.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1] gi|149819446|gb|EDM78876.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1] Length = 262 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--S 324 + GHTD P + + NW LS RA L+ +G+ +RI +G+A +A S Sbjct: 175 VAGHTDNVPIKTAKFQSNWELSSARAVEVVTFLIDTGMPAERIGS-AGYAEFD-PVADNS 232 Query: 325 DPMNSA-NRRIDILV 338 P A NRRI+I++ Sbjct: 233 SPEGRAQNRRIEIVL 247 >gi|255533363|ref|YP_003093735.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346347|gb|ACU05673.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 282 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 19/134 (14%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEV-ISI 268 ++KGV++ IS+ D M KS S LP+ L KI +++ + + I Sbjct: 142 VLKGVVY--------ISLSDN----MLYKSGSYEILPKAGETLSKIAKIIKDYRDYDVLI 189 Query: 269 RGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD- 325 G+TD P + R+NW LS RA S Q L + GV R++ G + A+D Sbjct: 190 EGNTDNVPISMVNIRNNWDLSALRASSVVQALQNTYGVDPKRLTA-GGRGEYNPLAANDT 248 Query: 326 -PMNSANRRIDILV 338 + NRR I++ Sbjct: 249 EAGKAKNRRTQIII 262 >gi|641920|gb|AAA85840.1| protein F precursor [Pseudomonas fluorescens] Length = 317 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 11/104 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ + D N +LS RA Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 272 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335 + QVL+K GV+ RI+ + G+ R A++ + NRR++ Sbjct: 273 AVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|167590675|ref|ZP_02383063.1| hypothetical protein BuboB_35381 [Burkholderia ubonensis Bu] Length = 394 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285 S + R MF + + ++ KI +A +++ G+TD +P R A N Sbjct: 279 STVTFRGDAMFPPGKAAVNASSGPLIAKIAAEIARVPGKVTVLGYTDNAPVRGSAFPSNE 338 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 LS RA Q+L +GV +R++ + G A+ + P + NRR++I V Sbjct: 339 ALSDARATQVMQMLQAAGVPANRLAALGKGAANPIGDNRTVPGRALNRRVEITV 392 >gi|256830500|ref|YP_003159228.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579676|gb|ACU90812.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 242 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L + + LA T +++ G+TD P +DN+ LS +RA S ++ G R S Sbjct: 148 LLSEFAQFLASVTMPVNVAGYTDNIPAGQ--KDNYMLSSERAMSVLTFFLQQGFDPRRFS 205 Query: 311 KISGFAHHRLKIASDPMNSA-NRRIDILVE 339 + L + P A NRR++IL++ Sbjct: 206 VSAYGEAFPLGDNATPEGRAKNRRVEILLK 235 >gi|91217237|ref|ZP_01254198.1| OmpA family protein [Psychroflexus torquis ATCC 700755] gi|91184580|gb|EAS70962.1| OmpA family protein [Psychroflexus torquis ATCC 700755] Length = 616 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276 E T T I I+ +R FD PE L K+ E+L + + I + HTD Sbjct: 494 EMTSTEAKILILQER--IFFDYDKVNIKPEAAFELDKLIEILKENENINIQVVSHTDE-- 549 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 R N +LS DRA S L+++GV +R+S Sbjct: 550 -RGSGAYNMKLSQDRAGSTVAYLIENGVDPERLS 582 >gi|295134908|ref|YP_003585584.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294982923|gb|ADF53388.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 281 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 19/135 (14%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 N+ KGV++ +SI D+ +FD + VL K+ V+ + ++ + Sbjct: 137 NVEKGVVY--------VSISDK---LLFDSGRYNVTNQAREVLGKVATVIKNKPDIEFMV 185 Query: 269 RGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD S ++ +DNW LS+ RA S ++L GV R++ +G +++ + +AS+ Sbjct: 186 EGHTDDKSISTSMFQDNWDLSVKRATSVVRILQDEFGVDPKRMTA-AGRSYY-MPVASNA 243 Query: 327 M---NSANRRIDILV 338 + NRR I+V Sbjct: 244 TAEGRAKNRRTRIVV 258 >gi|166712215|ref|ZP_02243422.1| hypothetical protein Xoryp_12360 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 438 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ L + + GHTD P R++ +DN+ LS RA S VL +G+ + R Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRR 402 Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338 + SG A IA P + NRR++IL+ Sbjct: 403 VQTSG-AGDSQPIALPPQLPGNRARNRRVEILL 434 >gi|297183087|gb|ADI19231.1| flagellar motor protein [uncultured delta proteobacterium HF0200_14D13] Length = 211 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 16/102 (15%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLM-KSGVSEDRI 309 QKI ++ H +++++ GH D P + NW LS RA + +L+ + G + D + Sbjct: 93 FQKIRDLPEHQGDLVTVEGHADNLPIHTDKYPSNWELSTARATNVATMLINRMGYASDTL 152 Query: 310 SKISGFAHHRLKI-------------ASDPMNSANRRIDILV 338 S ++G++ R K+ A + NRR++I++ Sbjct: 153 S-VNGYSDTRPKVSYKDARGNALRGTALEVARRTNRRVEIVI 193 >gi|285019096|ref|YP_003376807.1| outer membrane protein [Xanthomonas albilineans GPE PC73] gi|283474314|emb|CBA16815.1| hypothetical outer membrane protein [Xanthomonas albilineans] Length = 216 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 264 EVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 E++ + G TD R R DNW LS +RA + + L+ +GV D I + A + Sbjct: 124 EILMVSGFTDDRQVRVGNRQFVDNWELSAERALTVTRALIDAGVPADAIFAAAFGAQQPV 183 Query: 321 KI-ASDPMNSANRRIDI 336 A D ++NRR+++ Sbjct: 184 ASNADDAGRASNRRVEM 200 >gi|99082187|ref|YP_614341.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99038467|gb|ABF65079.1| OmpA family protein [Ruegeria sp. TM1040] Length = 207 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 + GHTDA + N RL L RA +A L+ G+S R+ ++ F + I +D Sbjct: 98 VYGHTDAVGSQTY---NKRLGLRRARAAVNYLVSRGISRSRLEAVASFGETQPLIVTDQR 154 Query: 328 NSANRR 333 NRR Sbjct: 155 ERRNRR 160 >gi|284038953|ref|YP_003388883.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283818246|gb|ADB40084.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 285 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 V + I + H TE ++I GHTD++ N +LS RA L+K G S+ I Sbjct: 197 VREAITYLYNHPTERLTITGHTDST---GTEAFNLKLSRLRAMVVRDKLIKQGASKRWIQ 253 Query: 311 KISGFAHHRLKIASDPM---NSANRRIDILVEDR 341 I+ ++L IA + + ANRR+ +LV+ R Sbjct: 254 VIA--MGNKLPIAPNNLPEGREANRRVTLLVKKR 285 >gi|110680553|ref|YP_683560.1| hypothetical protein RD1_3382 [Roseobacter denitrificans OCh 114] gi|109456669|gb|ABG32874.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 659 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Query: 265 VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR-L 320 +I + GHTD P + + DNW LS RA S + ++ + G+ +R++ +GF + + Sbjct: 579 IIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVDTLGIPPNRLAA-NGFGEFQPV 637 Query: 321 KIASDPMNSA-NRRIDI 336 + P A NRRI++ Sbjct: 638 AVEDTPEARAQNRRIEL 654 >gi|150377808|ref|YP_001314403.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419] gi|150032355|gb|ABR64470.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 420 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P +L I L + + + I GHTDAS A N RLSL+RA + Sbjct: 83 FDTGQSTLQPSAKPLLDDIATALKNFPDWGLRIVGHTDAS---GSAESNERLSLERADTI 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDIL 337 L++ G+ ++ ++ A IAS D + NRR++++ Sbjct: 140 KAALVERGIDAGKL--LAAGAGQNRPIASNETDEGRALNRRVELM 182 >gi|110639902|ref|YP_680112.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110282583|gb|ABG60769.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 505 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 41/172 (23%) Query: 174 FLPPLSKEKILAMKRKK----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + P L I A ++K R+ +L+K S T + ++ VLFE T +L Sbjct: 361 YYPTLDTFVITAAEQKALYATRIIELSKLSSGT------NILLHNVLFERTSYELL---- 410 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRL 287 SSS+P + +V + + +I + GHTD N+ A+ N L Sbjct: 411 ----------SSSLPALDQLVTVMN-----QYPGMIIELSGHTD-----NVGSAKKNMEL 450 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDI 336 S +R SA + L+ G+S DRI + G+ + +AS + NRR+++ Sbjct: 451 SKNRVESAKKYLVSKGISADRIKSV-GYG-SKYPVASNDGEQTRKYNRRVEL 500 >gi|145298369|ref|YP_001141210.1| flagellar motor protein MotB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851141|gb|ABO89462.1| Flagellar motor protein MotB [Aeromonas salmonicida subsp. salmonicida A449] Length = 305 Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL + +L + +RG+TD N I R NW LS RA + L+ GV+ R+ Sbjct: 166 VLNTLSSILKPVDNYVRVRGYTDNQQINNEIFRSNWTLSAARAEAVLTALIAKGVAPQRL 225 Query: 310 S 310 + Sbjct: 226 A 226 >gi|312795362|ref|YP_004028284.1| OmpA family protein [Burkholderia rhizoxinica HKI 454] gi|312167137|emb|CBW74140.1| OmpA family protein [Burkholderia rhizoxinica HKI 454] Length = 224 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S P VL ++ + L E+++ + GHTD++ R N LS +RA S Sbjct: 116 FDTNSYAIKPSFTPVLDQVAQTLTQHPELVAHVVGHTDST---GQPRYNQMLSQERAQSV 172 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 Q L GV+ R++ G + +++ + NRR++I + Sbjct: 173 AQYLALHGVAAQRLAAEGRGQSQPIADNSTEAGRAQNRRVEIYL 216 >gi|308066932|ref|YP_003868537.1| chemotaxis motB protein (Motility protein B) [Paenibacillus polymyxa E681] gi|305856211|gb|ADM67999.1| Chemotaxis motB protein (Motility protein B) [Paenibacillus polymyxa E681] Length = 275 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 12/104 (11%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--NP 89 SW + Y+D MT+L+A F+V++ +++ D + + Q + G+ D NP Sbjct: 16 SWLLPYSDLMTLLLALFIVLFGMSSLDAKKFETMAQSLSA----AFNGGTGVLDHSAANP 71 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTN--QKKQYQRLENNI 131 +S +D+ ++ V K ST+ QK+ QR E ++ Sbjct: 72 SSQS----MDMGKNKEQVSQPVKSKATSTSELQKQLAQREEEDL 111 >gi|58582662|ref|YP_201678.1| hypothetical protein XOO3039 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427256|gb|AAW76293.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 438 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ L + + GHTD P R++ +DN+ LS RA S VL +G+ + R Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRR 402 Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338 + SG + IA P + NRR++IL+ Sbjct: 403 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434 >gi|310639572|ref|YP_003944330.1| ompa/motb domain-containing protein [Paenibacillus polymyxa SC2] gi|309244522|gb|ADO54089.1| OmpA/MotB domain-containing protein [Paenibacillus polymyxa SC2] Length = 275 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 12/104 (11%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ--NP 89 SW + Y+D MT+L+A F+V++ +++ D + + Q + + + G+ D NP Sbjct: 16 SWLLPYSDLMTLLLALFIVLFGMSSLDAKKFETMAQSLS----SAFSGGTGVLDHSAANP 71 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTN--QKKQYQRLENNI 131 +S +D+ ++ + K ST+ QK+ QR E ++ Sbjct: 72 SSQS----MDMGKNKEEVSQPLKSKATSTSDLQKQLAQREEEDL 111 >gi|150024266|ref|YP_001295092.1| OmpA family outer membrane protein P60 [Flavobacterium psychrophilum JIP02/86] gi|113927364|emb|CAL07968.2| outer membrane protein A [Flavobacterium psychrophilum JIP02/86] gi|149770807|emb|CAL42272.1| Outer membrane protein OmpA family P60 [Flavobacterium psychrophilum JIP02/86] Length = 465 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 14/141 (9%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-A 260 T+ G VA+N V E + + D T +FD + +T+ +L + +L Sbjct: 333 TVKGTVANNGCPEVSEEAIK-----KLNDYAKTILFDNAKFTFQKQTLPILDAMVAILNE 387 Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 T SI G+TD S + N LS +RA + L+ G+S DR++ I G+ + Sbjct: 388 FPTSKFSIEGNTDNSGKKAT---NQTLSENRAKAVADFLISKGISSDRLTSI-GYGDS-M 442 Query: 321 KIASDPMNSA---NRRIDILV 338 IAS+ + NRR+++ V Sbjct: 443 PIASNKTKAGKAQNRRVEVKV 463 >gi|104780481|ref|YP_606979.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95109468|emb|CAK14169.1| putative outer membrane protein, OmpA family [Pseudomonas entomophila L48] Length = 322 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 LP T+ + ++ +V+ T+ + I GH D+S N +LSL+RA S + SG Sbjct: 139 LPITLGPITQVAKVIETDTKTAVLILGHADSS---GATAANQKLSLERAASVSAIFRLSG 195 Query: 304 VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + DR+ + G + A+D + NRR+++L+ Sbjct: 196 LQRDRL-MLKGMGSVMPRAANDSAEGRALNRRVEMLL 231 >gi|323697552|ref|ZP_08109464.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457484|gb|EGB13349.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 248 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 259 LAHSTEVISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + H + I I G+TD P N +DNW +S RA + + L+K G+ R++ +G A Sbjct: 159 IKHKDQNIKIVGYTDNVRPGGNSRFKDNWEISAMRAVNVLRELLKLGLESTRLTA-TGLA 217 Query: 317 HHR--LKIASDPMNSANRRIDILVEDR 341 + S+ + NRR++ ++E R Sbjct: 218 YLNPLYPNTSEEYRAKNRRVEFILEKR 244 >gi|294666305|ref|ZP_06731554.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603907|gb|EFF47309.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 419 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291 + MF P+ V+ +I + + + GHTD P R++ +DN+ LS R Sbjct: 307 SAAMFASGGVEVEPQQRGVIAQIAAAIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAAR 366 Query: 292 AYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSA-NRRIDILVE 339 A + QVL + R+ I +G + + P N A NRR++IL + Sbjct: 367 AQALAQVLQAQLSTPGRVEAIGAGDSQPIAQPVQLPANRARNRRVEILFQ 416 >gi|188575822|ref|YP_001912751.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520274|gb|ACD58219.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 438 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ L + + GHTD P R++ +DN+ LS RA S VL +G+ + R Sbjct: 344 LLERVAAALEQVPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRR 402 Query: 310 SKISGFAHHRLKIASDPM----NSANRRIDILV 338 + SG + IA P + NRR++IL+ Sbjct: 403 VQTSGAGDSQ-PIALPPQLPGNRARNRRVEILL 434 >gi|94500908|ref|ZP_01307434.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65] gi|94427027|gb|EAT12009.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65] Length = 2033 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 266 ISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-- 319 I + GHTD P R+I +N+ LSL RA SA LM+ ISG+ R Sbjct: 872 IEVAGHTDNVPIAKRSRHIFNNNYELSLARARSAADYLMRELELGPEQVTISGYGSQRPV 931 Query: 320 LKIASDPMNSANRRIDI 336 ++ + NRR+++ Sbjct: 932 TNNGNEQSRALNRRVEV 948 >gi|325335721|gb|ADZ11995.1| Flagellar motor protein [Riemerella anatipestifer RA-GD] Length = 281 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%) Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMK 301 LP VL K+ +V+ + + I G+TD P + + +DNW LS RA S +VL Sbjct: 165 LPAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQN 224 Query: 302 S-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 GV RI+ G + + K + ++ + NRR +I++ Sbjct: 225 QFGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIII 263 >gi|261417146|ref|YP_003250829.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373602|gb|ACX76347.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326585|gb|ADL25786.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 232 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 37/219 (16%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSE-KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N+ Y +N + H K LT + KGK + +TD + E ++ +P IL Sbjct: 33 NVTY-TNEENVPHAKKKLTFVGQNKGKKVVITTD----VYGEASFHIPREDSYTIL---- 83 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG---VLFETTR---TGILISIIDQRNTPMFDKSSS 242 + L + V+ G V+F+ TR TG+ F S+ Sbjct: 84 ---CESLTGPFECGETPYVSRTASTGGISVVFDDTRSELTGV-----------TFKAGSA 129 Query: 243 IPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +P ++ L I + + I + GHT + A N +LS DRA S +++ Sbjct: 130 ELVPSSLKTLNAAIAGLKRNPKAKIEVEGHTSSD---GSAELNQQLSEDRANSVRNYMIE 186 Query: 302 SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 G+ DR++ + G+ R K +++ ANRRI++ V Sbjct: 187 QGIDADRVTAV-GYGPSRPKGDNSTEAGRRANRRIELKV 224 >gi|313206839|ref|YP_004046016.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868] gi|312446155|gb|ADQ82510.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868] gi|315023913|gb|EFT36915.1| putative flagellar motor protein MotB [Riemerella anatipestifer RA-YM] Length = 278 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%) Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMK 301 LP VL K+ +V+ + + I G+TD P + + +DNW LS RA S +VL Sbjct: 162 LPAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQN 221 Query: 302 S-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 GV RI+ G + + K + ++ + NRR +I++ Sbjct: 222 QFGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIII 260 >gi|304312414|ref|YP_003812012.1| Predicted OmpA family protein [gamma proteobacterium HdN1] gi|301798147|emb|CBL46369.1| Predicted OmpA family protein [gamma proteobacterium HdN1] Length = 244 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 207 VADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAH 261 +AD + G + + R GI S+ +F +S+ PE + +L+++ + L Sbjct: 72 LADPLASGRITLDRGRIGISGSV-------LFALNSAELQPEGLALLREVSAPLRKYLEQ 124 Query: 262 STEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 E++ + G TD P + + DNW LS +RA + + L+ +G+ + + A Sbjct: 125 RQELLMVSGFTDDLPIQKGNHSFTDNWALSAERALTVTRALIDNGLPSTLVFAAAFGAEQ 184 Query: 319 RLKIASDPMNSA-NRRIDI 336 + SD A NRR++I Sbjct: 185 PIASNSDAEGRAKNRRVEI 203 >gi|237738475|ref|ZP_04568956.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817] gi|229420355|gb|EEO35402.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817] Length = 185 Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%) Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L +G+ LA + ++ + I GHTD + + N LSL RA S L+ GVS + IS Sbjct: 93 LNTLGKALAENKDIKLKIDGHTD---YIGTEQYNLNLSLKRANSIKNYLIGRGVSANNIS 149 Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILV 338 I G+ +A++ + NRR++ ++ Sbjct: 150 -IEGYGKQN-PVANNSTEAGRAKNRRVEFII 178 >gi|113866689|ref|YP_725178.1| outer membrane protein [Ralstonia eutropha H16] gi|113525465|emb|CAJ91810.1| outer membrane protein [Ralstonia eutropha H16] Length = 425 Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 10/141 (7%) Query: 203 LSGLVADNIVKGVLF---ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ L+ D I +GV+ + TR+ + R MF + + + +L K+ + Sbjct: 288 LAELLKDEIARGVISVQEDATRSAVTF-----RGDDMFGGGRAEVSDKVLPLLDKVAGEI 342 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + +++ GH+D P + N LS +RA + + L GV+++R+ I Sbjct: 343 NKVSGKVTVVGHSDNVPIKTAKYPSNQVLSEERAATVTEYLASKGVAKNRLEAIGKGDSE 402 Query: 319 RLKIASDPMNSA-NRRIDILV 338 L P A NRR++I+V Sbjct: 403 PLTDNKTPAARARNRRVEIVV 423 >gi|312891209|ref|ZP_07750731.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311296376|gb|EFQ73523.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 267 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSE 306 L+++ VL ++ I++ GHTD N+ +DNW LS+ RA S + L ++ V Sbjct: 162 ALKQLAAVLNKEPDIYIAVEGHTDDKKVINLGQIKDNWDLSVLRATSVTRYLTETEKVDP 221 Query: 307 DRISKISGFAHHRLKIASDPMNSA-NRRIDILVEDR 341 R++ + A P A NRRI+I++ R Sbjct: 222 VRLTATGKGQFQPIDPAGTPEARAKNRRIEIVLSPR 257 >gi|150388139|ref|YP_001318188.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948001|gb|ABR46529.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF] Length = 237 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWR 286 +I R++ +F + E ++L + L I I G TD P + N NW Sbjct: 122 VIRFRDSVLFGSGQARISQEGYMLLDHVTAKLRTIDNAIVIEGFTDNIPIQTNEFPSNWE 181 Query: 287 LSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILV 338 LS+ RA + ++ + + E RIS +SGF + I S+ N NRRI+I + Sbjct: 182 LSVARAIGVARYMIDEEYIEESRIS-VSGFGEQQ-PIDSNETNEGRANNRRIEITI 235 >gi|257871284|ref|ZP_05650937.1| flagellar motor protein MotB [Enterococcus gallinarum EG2] gi|257805448|gb|EEV34270.1| flagellar motor protein MotB [Enterococcus gallinarum EG2] Length = 254 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 24/39 (61%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +W + Y+D +T+L+A F+VM+ + DD+ + I F Sbjct: 14 AWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIRSEFG 52 >gi|302878485|ref|YP_003847049.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581274|gb|ADL55285.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 347 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS+ P L ++ + A E ++I GHTD+ R + N +LSL RA S Sbjct: 235 FDTSSAKIKPAADKKLNEVVDFAAKYKESNLAISGHTDS---RGSEKLNQKLSLSRAESV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDI 336 L+K GVS RI+ G A R +A + + NRR++I Sbjct: 292 KAYLVKKGVSAARIT-TKGEASTR-PVADNKTKAGRAQNRRVEI 333 >gi|124007678|ref|ZP_01692381.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123986800|gb|EAY26572.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 705 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ V L K+ +++ ++ ++ + I HTD + N RLS RA S + L+K+GV Sbjct: 608 DSYVELAKVVQLMENNKDIKLEISAHTDNV---GVYSRNMRLSRQRAQSVFNYLIKTGVD 664 Query: 306 EDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338 + R +SK G A + + + NRR++ V Sbjct: 665 KKRLVSKGYGSARPLVPNTTKKNKAKNRRVEFKV 698 >gi|330819528|ref|YP_004348390.1| type IV / VI secretion system protein, DotU family [Burkholderia gladioli BSR3] gi|327371523|gb|AEA62878.1| type IV / VI secretion system protein, DotU family [Burkholderia gladioli BSR3] Length = 469 Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F + P I +L+++ L + + GHTD P R++ +DN+ LS RA + Sbjct: 360 LFPSGGADIAPAEIPLLRQVAAALNQVKGRVIVVGHTDDQPIRSLKFKDNFALSTARAQN 419 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM----NSANRRIDIL 337 +L + G+ + R + +G A IA+ P + NRR++IL Sbjct: 420 TLAILAQ-GLDDPRRLEANG-AGSSQPIATPPSLPENRARNRRVEIL 464 >gi|302875899|ref|YP_003844532.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|307689333|ref|ZP_07631779.1| chemotaxis MotB protein [Clostridium cellulovorans 743B] gi|302578756|gb|ADL52768.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B] Length = 245 Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +W I YAD +T+L+A F+VM+ ++ D+ + Q N Sbjct: 15 TWLIPYADMLTLLLALFIVMFAMSKLDNQKVSQVSQQLN 53 >gi|89890270|ref|ZP_01201780.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7] gi|89517185|gb|EAS19842.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7] Length = 286 Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%) Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPF---RNIARDNWRLSLDRAYS 294 + SS P+ ++I I +L H I I+GH SP R++ W LS RA Sbjct: 185 RESSFPVMDSI-----INSLLLHKKYEIEIQGHICCLSPGVYGRDMDTGQWNLSKARAEQ 239 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + L+K GV+ DR++ I A+ + + + +RR++I Sbjct: 240 VKRFLVKYGVAADRLTTIGKQANFK----TGKGDFYDRRVEI 277 >gi|311746464|ref|ZP_07720249.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1] gi|126575359|gb|EAZ79691.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1] Length = 282 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Query: 251 VLQKIGEVL-AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 +LQK+ EV+ A + + I GHTD S + +DNW LS+ RA S + L ++ V+ + Sbjct: 180 LLQKLAEVINAEPSLQVMIEGHTDPRSISTGVLQDNWDLSVKRATSIVRKLQENYSVAPE 239 Query: 308 RISKISGFAHHRLKIASDPMNSA-NRRIDILV 338 ++ ++ L P N A NRR I++ Sbjct: 240 KMIAAGRSSYMPLVENDTPENMAINRRTRIVL 271 >gi|86740618|ref|YP_481018.1| OmpA/MotB [Frankia sp. CcI3] gi|86567480|gb|ABD11289.1| OmpA/MotB [Frankia sp. CcI3] Length = 363 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 8/95 (8%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P + L ++ L V+ + GH DAS A N LSLDRA L GV Sbjct: 269 PPARLWLDRVAAALRAGRVVVLVGGHADAS---GSATLNQALSLDRAQVIADYLTDRGVR 325 Query: 306 EDRISKISGFAHHRLKIA--SDPMN-SANRRIDIL 337 D I +++GF R +A + P +ANRR++I+ Sbjct: 326 PDLI-RVAGFG-SRWPVADNATPRGRAANRRVEIV 358 >gi|66770081|ref|YP_244843.1| hypothetical protein XC_3783 [Xanthomonas campestris pv. campestris str. 8004] gi|77747955|ref|NP_639058.2| hypothetical protein XCC3712 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188993294|ref|YP_001905304.1| hypothetical protein xccb100_3899 [Xanthomonas campestris pv. campestris str. B100] gi|66575413|gb|AAY50823.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167735054|emb|CAP53266.1| OmpA family protein [Xanthomonas campestris pv. campestris] Length = 215 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTEVISIRGHTDASPFRNIAR-- 282 I R + +F +S PE VL+ + E L E++ I G TD P + R Sbjct: 85 IGIRGSVLFALNSDQLQPEGREVLKSLAAPLSEYLVSREEILMISGFTDDRPVLDSNRRY 144 Query: 283 -DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-NRRIDI 336 DNW LS RA + + L+ GV + + + + +D A NRR++I Sbjct: 145 ADNWELSAQRALTVTRALIAEGVPASSVFAAAFGSQQPVDSNADETRRAKNRRVEI 200 >gi|224540643|ref|ZP_03681182.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus DSM 14838] gi|224517715|gb|EEF86820.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus DSM 14838] Length = 299 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 29/142 (20%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--- 267 ++KGV++ IS+ D M KS S + E + GE L+ ++I+ Sbjct: 155 VLKGVVY--------ISLADN----MLYKSGSYEINE------RAGETLSKIAKIITDYK 196 Query: 268 -----IRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRL 320 + G+TD P R R+NW LS RA S Q L K GV R+S ++ + Sbjct: 197 DYEVLVEGNTDNVPISRTNIRNNWDLSALRASSVVQELQNKYGVDPKRLSAAGRGEYNPI 256 Query: 321 KIASDPMNSA-NRRIDILVEDR 341 + NRR I+V R Sbjct: 257 TDNDSELGKQRNRRTQIIVTPR 278 >gi|270285686|ref|ZP_06195080.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Nigg] gi|270289694|ref|ZP_06195996.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Weiss] gi|301337081|ref|ZP_07225283.1| peptidoglycan-associated lipoprotein [Chlamydia muridarum MopnTet14] Length = 188 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 RN S SI + + +L + L S + + I GHTD R A N L Sbjct: 80 RNITFATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGAR 136 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 RA + Q L+K G++ DR+ IS H + + + NRR + + R Sbjct: 137 RANAVKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 188 >gi|15835503|ref|NP_297262.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Nigg] gi|7190917|gb|AAF39684.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Nigg] Length = 202 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 RN S SI + + +L + L S + + I GHTD R A N L Sbjct: 94 RNITFATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGAR 150 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 RA + Q L+K G++ DR+ IS H + + + NRR + + R Sbjct: 151 RANAVKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 202 >gi|325953930|ref|YP_004237590.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323436548|gb|ADX67012.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 284 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 17/133 (12%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEV-ISI 268 ++KGV++ IS+ D M KS S + P L KI +++ + + I Sbjct: 146 VLKGVVY--------ISLADN----MLYKSGSYEISPAAGETLSKIAKIIKDYRDYDVLI 193 Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKI-ASD 325 G+TD P R R+NW LS RA S Q L + GV R++ ++ + A++ Sbjct: 194 EGNTDNVPINRPNIRNNWDLSALRASSVVQALQNQYGVDPKRLTAGGRGEYNPVTTNATE 253 Query: 326 PMNSANRRIDILV 338 S NRR I++ Sbjct: 254 EGKSKNRRTQIII 266 >gi|347163|gb|AAA62423.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 11/104 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARD--NWRLSLDRAY 293 FD S+ P + ++ + + +A + + + GHTD+ + D N +LS RA Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDS-----VGPDAYNQKLSQRRAD 272 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRID 335 + QVL+K GV+ R++ + G+ R A++ + NRR++ Sbjct: 273 AVKQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 315 Searching..................................................done Results from round 2 >gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] gi|254040206|gb|ACT57002.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD Sbjct: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ Sbjct: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK Sbjct: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS Sbjct: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM Sbjct: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG Sbjct: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 >gi|306841271|ref|ZP_07473982.1| flagellar motor protein MotB [Brucella sp. BO2] gi|306845424|ref|ZP_07477998.1| flagellar motor protein MotB [Brucella sp. BO1] gi|306274167|gb|EFM55983.1| flagellar motor protein MotB [Brucella sp. BO1] gi|306288673|gb|EFM60004.1| flagellar motor protein MotB [Brucella sp. BO2] Length = 366 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 35/364 (9%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQ 125 FNP LM +N +R K+ D+ + TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVENVDQRD--GKVRFESDQQVENSTKVVNDTTVRPASDQEERQ 121 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK--- 182 L+ + + + G S + F P K Sbjct: 122 LFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181 Query: 183 -----------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLF 217 K+ + ++L + +G A N K V Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVTV 241 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF Sbjct: 242 VPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPF 301 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDIF 361 Query: 338 VEDR 341 ++ + Sbjct: 362 IKSK 365 >gi|23500858|ref|NP_700298.1| flagellar motor protein MotB [Brucella suis 1330] gi|163845462|ref|YP_001623117.1| flagellar motor protein MotB [Brucella suis ATCC 23445] gi|225628433|ref|ZP_03786467.1| Protein mbhA [Brucella ceti str. Cudo] gi|254711223|ref|ZP_05173034.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94] gi|254711824|ref|ZP_05173635.1| flagellar motor protein MotB [Brucella ceti M644/93/1] gi|254714893|ref|ZP_05176704.1| flagellar motor protein MotB [Brucella ceti M13/05/1] gi|256015903|ref|YP_003105912.1| flagellar motor protein [Brucella microti CCM 4915] gi|256030148|ref|ZP_05443762.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1] gi|256059799|ref|ZP_05449994.1| flagellar motor protein MotB [Brucella neotomae 5K33] gi|256158327|ref|ZP_05456231.1| flagellar motor protein MotB [Brucella ceti M490/95/1] gi|256252739|ref|ZP_05458275.1| flagellar motor protein MotB [Brucella ceti B1/94] gi|260166800|ref|ZP_05753611.1| flagellar motor protein MotB [Brucella sp. F5/99] gi|261216582|ref|ZP_05930863.1| flagellar motor protein MotB [Brucella ceti M13/05/1] gi|261219818|ref|ZP_05934099.1| flagellar motor protein MotB [Brucella ceti B1/94] gi|261318815|ref|ZP_05958012.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94] gi|261319452|ref|ZP_05958649.1| flagellar motor protein MotB [Brucella ceti M644/93/1] gi|261323779|ref|ZP_05962976.1| flagellar motor protein MotB [Brucella neotomae 5K33] gi|261756178|ref|ZP_05999887.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|265987178|ref|ZP_06099735.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1] gi|265996841|ref|ZP_06109398.1| flagellar motor protein MotB [Brucella ceti M490/95/1] gi|23464523|gb|AAN34303.1| chemotaxis motB protein [Brucella suis 1330] gi|163676185|gb|ABY40295.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|225616279|gb|EEH13327.1| Protein mbhA [Brucella ceti str. Cudo] gi|255998563|gb|ACU50250.1| flagellar motor protein [Brucella microti CCM 4915] gi|260918402|gb|EEX85055.1| flagellar motor protein MotB [Brucella ceti B1/94] gi|260921671|gb|EEX88239.1| flagellar motor protein MotB [Brucella ceti M13/05/1] gi|261292142|gb|EEX95638.1| flagellar motor protein MotB [Brucella ceti M644/93/1] gi|261298038|gb|EEY01535.1| flagellar motor protein MotB [Brucella pinnipedialis B2/94] gi|261299759|gb|EEY03256.1| flagellar motor protein MotB [Brucella neotomae 5K33] gi|261736162|gb|EEY24158.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|262551138|gb|EEZ07299.1| flagellar motor protein MotB [Brucella ceti M490/95/1] gi|264659375|gb|EEZ29636.1| flagellar motor protein MotB [Brucella pinnipedialis M292/94/1] Length = 366 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM +N +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|294852974|ref|ZP_06793646.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] gi|294818629|gb|EFG35629.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] Length = 366 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM +N +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEKRQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|161621187|ref|YP_001595073.1| flagellar motor protein MotB [Brucella canis ATCC 23365] gi|254702390|ref|ZP_05164218.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686] gi|260568709|ref|ZP_05839178.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261752951|ref|ZP_05996660.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686] gi|161337998|gb|ABX64302.1| Protein mbhA [Brucella canis ATCC 23365] gi|260155374|gb|EEW90455.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261742704|gb|EEY30630.1| flagellar motor protein MotB [Brucella suis bv. 3 str. 686] Length = 366 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM +N +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSTRAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|306840141|ref|ZP_07472926.1| flagellar motor protein MotB [Brucella sp. NF 2653] gi|306404786|gb|EFM61080.1| flagellar motor protein MotB [Brucella sp. NF 2653] Length = 366 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 35/364 (9%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQ 125 FNP LM +N +R K+ D+ + TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVENVDQRD--GKVRFESDQQVENSTKVVNDTTVRPASDQEERQ 121 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK--- 182 L+ + + + G S + F P K Sbjct: 122 LFREPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181 Query: 183 -----------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLF 217 K+ + ++L + +G A N K V Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVTV 241 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF Sbjct: 242 VPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARPF 301 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDIF 361 Query: 338 VEDR 341 ++ + Sbjct: 362 IKSK 365 >gi|254720768|ref|ZP_05182579.1| flagellar motor protein MotB [Brucella sp. 83/13] gi|265985826|ref|ZP_06098561.1| flagellar motor protein MotB [Brucella sp. 83/13] gi|264664418|gb|EEZ34679.1| flagellar motor protein MotB [Brucella sp. 83/13] Length = 366 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 35/364 (9%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQ 125 FNP LM +N +R K+ D+ + TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVENVDQRD--GKVRFESDQQVENSTKVVNDTTVRPASDQEERQ 121 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK--- 182 L+ + + + G S + F P K Sbjct: 122 LFREPYAMLAELAHETGVLQNQSVKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVG 181 Query: 183 -----------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLF 217 K+ + ++L + +G A N K V Sbjct: 182 DLTPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAQNAGKAAKPEPMPDVTV 241 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF Sbjct: 242 VPVEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQLGEVIISGHTDARPF 301 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI Sbjct: 302 KSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPTDPNAAENRRIDIF 361 Query: 338 VEDR 341 ++ + Sbjct: 362 IKSK 365 >gi|256112172|ref|ZP_05453093.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether] gi|265993598|ref|ZP_06106155.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether] gi|262764468|gb|EEZ10500.1| flagellar motor protein MotB [Brucella melitensis bv. 3 str. Ether] Length = 366 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM QN +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S+ + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSSSGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|254695098|ref|ZP_05156926.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya] gi|261215449|ref|ZP_05929730.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya] gi|260917056|gb|EEX83917.1| flagellar motor protein MotB [Brucella abortus bv. 3 str. Tulya] Length = 366 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 96/362 (26%), Positives = 158/362 (43%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM QN +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|17988498|ref|NP_541131.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. 16M] gi|256042871|ref|ZP_05445817.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1] gi|260564108|ref|ZP_05834593.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265989306|ref|ZP_06101863.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1] gi|17984289|gb|AAL53395.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M] gi|260151751|gb|EEW86844.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262999975|gb|EEZ12665.1| flagellar motor protein MotB [Brucella melitensis bv. 1 str. Rev.1] Length = 366 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP L+ QN +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLIDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|319409174|emb|CBI82818.1| putative flagellar motor protein MotB [Bartonella schoenbuchensis R1] Length = 396 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 171/364 (46%), Gaps = 29/364 (7%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 + Q + + II+++ D ++ G+WKI YADF+T +MAFFLVMW++NA D++T++ Sbjct: 2 KSEDEQSHSEIIIVRRGGHDDHDEHHGGAWKIAYADFVTAMMAFFLVMWLVNAKDEETRE 61 Query: 64 AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 AI YFNP S ++N E + + S ++++ S + + Sbjct: 62 AIANYFNPIKLTDSQTSSRSIQKKNDVEDDKICPVGQTCGGD--SKSENVQLVSLEETEL 119 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK----SINKEENYFLPPLS 179 + + + + SQQ+ SL K + L ++ + + + F P Sbjct: 120 MRDPYSGLDKIVQSQQNVQNMQSLPDSDGKHETLMGNSKGDSKENLPVTDYRDPFSPHYW 179 Query: 180 KEKILA-----------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT------ 222 KE + + K + Q LA++ + + + ++ E T Sbjct: 180 KENVASHNNTLNAQGIEWKEGQAQQQLAQEDAPSQESRDFAKELADLIKEITDENHLSAS 239 Query: 223 ------GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G++I ++DQ MF SS+P +T+ + +I +V+A + + GHTDA P Sbjct: 240 VLPIREGVMIELMDQPEYEMFKVGSSVPTAQTVEFIDRIAKVIAKHPGNVVVGGHTDARP 299 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 +R+ RDNW+LS RA Y +L++ G+ E RI ++ G+A LK DP S NRR I Sbjct: 300 YRSTTRDNWQLSTSRAQMVYYMLVRGGLDEKRILRVEGYADRNLKNKQDPYASENRRTSI 359 Query: 337 LVED 340 V D Sbjct: 360 FVRD 363 >gi|225686890|ref|YP_002734862.1| flagellar motor protein MotB [Brucella melitensis ATCC 23457] gi|256261973|ref|ZP_05464505.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225642995|gb|ACO02908.1| Protein mbhA [Brucella melitensis ATCC 23457] gi|263091457|gb|EEZ15993.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326411308|gb|ADZ68372.1| flagellar motor protein MotB [Brucella melitensis M28] gi|326554597|gb|ADZ89236.1| flagellar motor protein MotB [Brucella melitensis M5-90] Length = 366 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 158/362 (43%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVVSY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM QN +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAAIGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 304 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|167571659|ref|ZP_02364533.1| flagellar motor protein MotB [Burkholderia oklahomensis C6786] Length = 340 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ ++ G+T + L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDSSIVKGGGRDISSIEAGATRRTDGSTSL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + I S + + SL R + Sbjct: 109 ADRIVKKSEDEALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQARLHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|153011513|ref|YP_001372727.1| flagellar motor protein MotB [Ochrobactrum anthropi ATCC 49188] gi|151563401|gb|ABS16898.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 371 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 42/369 (11%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQY 124 FNP + ++SKG+ D + K+ D+ I TK D + + +++ Sbjct: 66 FNPVKLMDRHSSSKGVQDVE-----EKDGKVRYESDQKIENSTKVINDTTVAPPSDQEER 120 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 Q LS + + + G + + F P K + Sbjct: 121 QLFREPYAVLSELAHETGVLQNQSAKGDGGTSQSGPATGAEGGEAYRDPFSPDYWSSKAV 180 Query: 185 -----------------------------AMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 A +++ + DL K + A+ Sbjct: 181 DDLTPPDAAPAAPPKPETAQPKPEETAKPAETQEQLIADLKKAAEGEAAKEGAEAKKAEP 240 Query: 216 LFETT----RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + + T G++I + D+ + MF S+ P + +L++I +V++ + I GH Sbjct: 241 MPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQPGEVIISGH 300 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 TDA PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K ASDP + N Sbjct: 301 TDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNASDPNAAEN 360 Query: 332 RRIDILVED 340 RRIDI ++ Sbjct: 361 RRIDIFLKS 369 >gi|167564510|ref|ZP_02357426.1| flagellar motor protein MotB [Burkholderia oklahomensis EO147] Length = 340 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ ++ G+T + L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDSSIVKGGGRDISSIEAGATRRTDGSTSL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + I S + + SL R + Sbjct: 109 ADRIVKKSEDEALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|239834431|ref|ZP_04682759.1| Protein mbhA [Ochrobactrum intermedium LMG 3301] gi|239822494|gb|EEQ94063.1| Protein mbhA [Ochrobactrum intermedium LMG 3301] Length = 379 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 97/377 (25%), Positives = 165/377 (43%), Gaps = 50/377 (13%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLVMW+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHDSHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASY 65 Query: 69 FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI---TKNSVDLKIGSTNQKKQY 124 FNP + ++ KG+ D + K+ D+ I TK D + +++++ Sbjct: 66 FNPVKLMDRHSSPKGVQDVE-----EKDGKVRYESDQKIENSTKVINDTTVAPPSEQEER 120 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 Q LS + + + G + F P K + Sbjct: 121 QLFREPYAVLSELAHETGVLQNQSAKGDGGTSKSGPATGADGGEAYRDPFSPDYWSSKAV 180 Query: 185 -------------------------------------AMKRKKRLQDLAK----KISSTL 203 A K+++ + DL K + + Sbjct: 181 EDLTPPDAAPATPPRPEAAQPKPEEAAKPAEAPADTPAEKQEQLIADLKKAAEGETAKEG 240 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V G++I + D+ + MF S+ P + +L++I +V++ Sbjct: 241 TAAKKAEPMPDVTVVPVDGGVMIQLTDKIDYGMFTIGSAKPDARVVQMLERIAQVISRQP 300 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + I GHTDA PF++ DNWRLS RA AY +L++ G+ E R+ ++ G+A + K A Sbjct: 301 GEVIISGHTDARPFKSATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNA 360 Query: 324 SDPMNSANRRIDILVED 340 +DP + NRRIDI ++ Sbjct: 361 NDPNAAENRRIDIFLKS 377 >gi|330815146|ref|YP_004358851.1| MotB [Burkholderia gladioli BSR3] gi|327367539|gb|AEA58895.1| MotB [Burkholderia gladioli BSR3] Length = 361 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW+++A K I YFN K Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + N S + I IT++ Sbjct: 69 ALFG--------NGDRSSHDSSIINGGGSDITRS-----------------------DSG 97 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +++++ R ++ G+D D + + RL DL Sbjct: 98 TTRRTDGSTMLANRLTQAGRDDEHDVD------------------RGSQDRQEQVRLHDL 139 Query: 196 AKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 K+ + + V + + ++T TG+ I I+D + PMF SS P +L++ Sbjct: 140 QIKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDTQKRPMFALSSDAVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 200 IGKTLNDVPNRIVMQGHTDAVPYSGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +G A + +DP++ NRRI ILV +R+ Sbjct: 260 TGLASTQNLNKADPLDPENRRISILVLNRK 289 >gi|76809964|ref|YP_331496.1| flagellar motor protein MotB [Burkholderia pseudomallei 1710b] gi|126438376|ref|YP_001060851.1| flagellar motor protein MotB [Burkholderia pseudomallei 668] gi|126452767|ref|YP_001068158.1| flagellar motor protein MotB [Burkholderia pseudomallei 1106a] gi|134281430|ref|ZP_01768138.1| chemotaxis protein MotB [Burkholderia pseudomallei 305] gi|167721693|ref|ZP_02404929.1| flagellar motor protein MotB [Burkholderia pseudomallei DM98] gi|167740671|ref|ZP_02413445.1| flagellar motor protein MotB [Burkholderia pseudomallei 14] gi|167826260|ref|ZP_02457731.1| flagellar motor protein MotB [Burkholderia pseudomallei 9] gi|167847768|ref|ZP_02473276.1| flagellar motor protein MotB [Burkholderia pseudomallei B7210] gi|167896356|ref|ZP_02483758.1| flagellar motor protein MotB [Burkholderia pseudomallei 7894] gi|167904730|ref|ZP_02491935.1| flagellar motor protein MotB [Burkholderia pseudomallei NCTC 13177] gi|167913010|ref|ZP_02500101.1| flagellar motor protein MotB [Burkholderia pseudomallei 112] gi|167920947|ref|ZP_02508038.1| flagellar motor protein MotB [Burkholderia pseudomallei BCC215] gi|217423951|ref|ZP_03455451.1| chemotaxis protein MotB [Burkholderia pseudomallei 576] gi|226193238|ref|ZP_03788848.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9] gi|237814248|ref|YP_002898699.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346] gi|242314580|ref|ZP_04813596.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b] gi|254183890|ref|ZP_04890481.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655] gi|254186366|ref|ZP_04892883.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237] gi|254261280|ref|ZP_04952334.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a] gi|254298791|ref|ZP_04966242.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e] gi|42766714|gb|AAS45440.1| MotB [Burkholderia pseudomallei] gi|76579417|gb|ABA48892.1| MotB [Burkholderia pseudomallei 1710b] gi|126217869|gb|ABN81375.1| chemotaxis protein MotB [Burkholderia pseudomallei 668] gi|126226409|gb|ABN89949.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106a] gi|134247097|gb|EBA47183.1| chemotaxis protein MotB [Burkholderia pseudomallei 305] gi|157808693|gb|EDO85863.1| chemotaxis protein MotB [Burkholderia pseudomallei 406e] gi|157934051|gb|EDO89721.1| chemotaxis protein MotB [Burkholderia pseudomallei Pasteur 52237] gi|184214422|gb|EDU11465.1| chemotaxis protein MotB [Burkholderia pseudomallei 1655] gi|217393014|gb|EEC33036.1| chemotaxis protein MotB [Burkholderia pseudomallei 576] gi|225934838|gb|EEH30815.1| chemotaxis protein MotB [Burkholderia pseudomallei Pakistan 9] gi|237506677|gb|ACQ98995.1| flagellar motor protein MotB [Burkholderia pseudomallei MSHR346] gi|242137819|gb|EES24221.1| chemotaxis protein MotB [Burkholderia pseudomallei 1106b] gi|254219969|gb|EET09353.1| chemotaxis protein MotB [Burkholderia pseudomallei 1710a] Length = 340 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ L G+T + L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDASIIKGGGRDISSLDAGTTRRTDGSTHL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S + SL R + Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|53720918|ref|YP_109904.1| flagellar motor protein MotB [Burkholderia pseudomallei K96243] gi|167817882|ref|ZP_02449562.1| flagellar motor protein MotB [Burkholderia pseudomallei 91] gi|52211332|emb|CAH37321.1| chemotaxis protein MotB [Burkholderia pseudomallei K96243] Length = 340 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ L G+T + L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDASIIKGGGRDISSLDAGTTRRTDGSTHL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S + SL R + Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|83721243|ref|YP_443678.1| flagellar motor protein MotB [Burkholderia thailandensis E264] gi|167582718|ref|ZP_02375592.1| flagellar motor protein MotB [Burkholderia thailandensis TXDOH] gi|83655068|gb|ABC39131.1| chemotaxis protein MotB [Burkholderia thailandensis E264] Length = 344 Score = 259 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ + G+T L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDSSIIKGGGRDISSVDAGTTRLTDGSTHL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S + SL R + Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQIRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|221214225|ref|ZP_03587197.1| flagellar motor protein [Burkholderia multivorans CGD1] gi|221165880|gb|EED98354.1| flagellar motor protein [Burkholderia multivorans CGD1] Length = 338 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 50/335 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YF Sbjct: 3 KGKERAIVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N + + S ++ D SI ++ + G+ + +L Sbjct: 63 NTPLRAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTQLAE 110 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + K D ++ ++ + E L L + + A++ Sbjct: 111 RV--------------------AKPADDTAQARMQGALERREQVRLHDLQIKLMAAIEAN 150 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 151 PTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMR 194 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E Sbjct: 195 DILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEA 254 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 255 KVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|254250906|ref|ZP_04944224.1| Flagellar motor protein [Burkholderia dolosa AUO158] gi|124893515|gb|EAY67395.1| Flagellar motor protein [Burkholderia dolosa AUO158] Length = 339 Score = 259 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ + G+ + L Sbjct: 61 YFNTPLKAALFGS------------GDRSSQDSSIIDGGGRDLSSVDAGTLRRTDGTTNL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + ++ + +L R + Sbjct: 109 ADRVAKKNDEDAQAQAQGALER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDHVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|254194681|ref|ZP_04901112.1| chemotaxis protein MotB [Burkholderia pseudomallei S13] gi|169651431|gb|EDS84124.1| chemotaxis protein MotB [Burkholderia pseudomallei S13] Length = 340 Score = 259 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ L G+T + L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDASIIKGGGRDISSLDAGTTRRTDGSAHL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S + SL R + Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|167620832|ref|ZP_02389463.1| flagellar motor protein MotB [Burkholderia thailandensis Bt4] Length = 348 Score = 259 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKGKDQAIIVKR-VNQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ + G+T L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDSSIIKGGGRDISSVDAGTTRLTDGSTHL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S + SL R + Sbjct: 109 AERVAKKSEDDALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQIRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|83593178|ref|YP_426930.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|83576092|gb|ABC22643.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 360 Score = 259 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 149/333 (44%), Gaps = 19/333 (5%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ IIIK+ + ++ G+WK+ YADF+T +MAFFL++W++N+ ++ I YF P Sbjct: 3 DQPIIIKR-IKKGGHAHHGGAWKLAYADFVTAMMAFFLLLWLLNSVTEEQLVGISNYFAP 61 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + + G + S +T + G + + ++ + Sbjct: 62 TAVSQSPSGAGGVLGGQVLGEGASQSNSSSPAVQLTLPPPTIGAGGQDFSDANEGVDASD 121 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + E S GK + TD + + +E+ ++++ Sbjct: 122 SDDDAGK-GEGKGASAGDLEGLGKLGVEPTDKQLAAAEEK---------------RQQEE 165 Query: 192 LQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 A ++ + + + + +L + T G+ I +ID+ MF SS LP T Sbjct: 166 FNKTATELRQAIQAVPSLQALSNSLLIDNTPEGLRIQLIDREGLSMFPTGSSALLPHTRD 225 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + + +A ISI GHTDA P+ + NW LS DRA ++ +VL+ +G+ EDR+ Sbjct: 226 LLALVAKAVADVPNKISISGHTDAPPYSDPSGYGNWELSADRALASRRVLLANGLKEDRV 285 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G A +A DP +NRRI I + + Sbjct: 286 DRVVGKAETEPLLADDPKAPSNRRIAITLLRDR 318 >gi|238025855|ref|YP_002910086.1| flagellar motor protein MotB [Burkholderia glumae BGR1] gi|124695899|gb|ABN14293.1| MotB [Burkholderia glumae BGR1] gi|124695929|gb|ABN14297.1| MotB [Burkholderia glumae BGR1] gi|237875049|gb|ACR27382.1| MotB [Burkholderia glumae BGR1] Length = 349 Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats. Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 52/330 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW+++A K I YFN K Sbjct: 9 IVVKRVAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIADYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + N S + I IT++ + RL Sbjct: 69 ALFG--------NGDRSSHDSSIIQGGGSDITRSDAGTTRRTDGTTMLASRL-------- 112 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++KG+D TD E + RL DL Sbjct: 113 ---------------AQKGRDDLHDTDPGSQDRAE------------------QARLHDL 139 Query: 196 AKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 K+ + + V + + ++T +G+ I I+D + PMF +S++ P +L++ Sbjct: 140 QIKLMAAIEANPVLRQFKQQIRIDSTLSGLRIEIVDTQKRPMFATASNMVEPYMRDILRE 199 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ + ++ ++ Sbjct: 200 IGKTLNEVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELISGGMDDAKVLRV 259 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +G A + +DP + NRRI ILV + + Sbjct: 260 TGLASTQNLNKADPFDPENRRISILVLNHK 289 >gi|295678083|ref|YP_003606607.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295437926|gb|ADG17096.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 336 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 149/338 (44%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 3 SKDKDRAIVVKRSAPRKH-GHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN KI L + ++S LK G + Q + Sbjct: 62 YFNQPL-----------------------KITLWGGDRSAEDSSILKGGGRDISTDAQGV 98 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + SN + +N+ + + L + Sbjct: 99 TRSTDGSSNRAERTASRNNEDSVKQ---------------------------LQGELERR 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + + P Sbjct: 132 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELVAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +++ Sbjct: 252 DEAKVMRVLGLASTQNLNKADPLDPENRRISIIVLNKK 289 >gi|167587857|ref|ZP_02380245.1| flagellar motor protein MotB [Burkholderia ubonensis Bu] Length = 340 Score = 258 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 151/338 (44%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN + + S ++ D SI ++ + GST + L Sbjct: 61 YFNTPLQAALFGS------------GDRSSQDSSIINGGGRDISSVDAGSTRRTDGSTSL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + ++ + + SL R + Sbjct: 109 ADRVAKKNDDEAQAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDSQKRPMFAMSSDHVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 252 DESKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|221202105|ref|ZP_03575140.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221209087|ref|ZP_03582082.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221171082|gb|EEE03534.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221177899|gb|EEE10311.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 338 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 50/335 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YF Sbjct: 3 KGKERAIVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N + + S ++ D SI ++ + G+ + +L Sbjct: 63 NTPLRAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTQLAE 110 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + K D ++ ++ + E L L + + A++ Sbjct: 111 RV--------------------AKPTDDTAQARMQGALERREQVRLHDLQIKLMAAIEAN 150 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 151 PTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDQVEPYMR 194 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E Sbjct: 195 DILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEA 254 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 255 KVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|161523343|ref|YP_001578355.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616] gi|189351884|ref|YP_001947512.1| flagellar motor protein MotB [Burkholderia multivorans ATCC 17616] gi|160340772|gb|ABX13858.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189335906|dbj|BAG44976.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616] Length = 338 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 147/335 (43%), Gaps = 50/335 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YF Sbjct: 3 KGKERAIVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N + + S ++ D SI ++ G+ + +L Sbjct: 63 NTPLRAALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDGTTQLAE 110 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + K D ++ ++ + E L L + + A++ Sbjct: 111 RV--------------------AKPADDTAQARMQGALERREQVRLHDLQIKLMAAIEAN 150 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 151 PTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMR 194 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E Sbjct: 195 DILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGMDEA 254 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 255 KVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|62317962|ref|YP_223815.1| flagellar motor protein MotB [Brucella abortus bv. 1 str. 9-941] gi|83269939|ref|YP_419230.1| flagellar motor protein MotB [Brucella melitensis biovar Abortus 2308] gi|189023213|ref|YP_001932954.1| flagellar motor protein MotB [Brucella abortus S19] gi|237817509|ref|ZP_04596499.1| Protein mbhA [Brucella abortus str. 2308 A] gi|254691605|ref|ZP_05154859.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870] gi|254698194|ref|ZP_05160022.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59] gi|254731639|ref|ZP_05190217.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292] gi|256256793|ref|ZP_05462329.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68] gi|260544147|ref|ZP_05819968.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260757237|ref|ZP_05869585.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870] gi|260759398|ref|ZP_05871746.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292] gi|260762641|ref|ZP_05874973.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59] gi|260883041|ref|ZP_05894655.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68] gi|297250146|ref|ZP_06933847.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] gi|62198155|gb|AAX76454.1| MotB, chemotaxis protein [Brucella abortus bv. 1 str. 9-941] gi|82940213|emb|CAJ13269.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308] gi|189021787|gb|ACD74508.1| OmpA/MotB domain protein [Brucella abortus S19] gi|237787264|gb|EEP61482.1| Protein mbhA [Brucella abortus str. 2308 A] gi|260097418|gb|EEW81292.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260669716|gb|EEX56656.1| flagellar motor protein MotB [Brucella abortus bv. 4 str. 292] gi|260673062|gb|EEX59883.1| flagellar motor protein MotB [Brucella abortus bv. 2 str. 86/8/59] gi|260677345|gb|EEX64166.1| flagellar motor protein MotB [Brucella abortus bv. 6 str. 870] gi|260872569|gb|EEX79638.1| flagellar motor protein MotB [Brucella abortus bv. 9 str. C68] gi|297174015|gb|EFH33379.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] Length = 366 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 31/362 (8%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT +MAFFLV+W+INA +++TK A+ Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLVLWLINAANEETKAAVASY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM QN +R + + + E TK D + + +++ Q Sbjct: 66 FNPV--KLMDRHSSPKGVQNVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 123 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 124 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 183 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 184 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 243 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++ + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 244 VEGGVMSQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 303 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DN RLS RA AY +L++ G+ E R+ ++ G+A K +DP + NRRIDI ++ Sbjct: 304 ATYDNRRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIK 363 Query: 340 DR 341 + Sbjct: 364 SK 365 >gi|253998520|ref|YP_003050583.1| flagellar motor protein MotB [Methylovorus sp. SIP3-4] gi|313200598|ref|YP_004039256.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|253985199|gb|ACT50056.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] gi|312439914|gb|ADQ84020.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 316 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 62/337 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ + II+K+ + ++ G+WKI YADF+T +MAFFL+MW++ +T T + I +YF Sbjct: 3 EDTKPIIVKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKATLEGISEYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K + + + + + +TK +K + KQ Sbjct: 62 KMPLKVALQGGPSVAASDS---------VLKGGGKDLTKKQAQVKPVDGPKGKQ------ 106 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 K D++ + E + Sbjct: 107 -----------------------------KEVDIKDAKTALEKA--------------EQ 123 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L +L KI + + K +L + T G+ I I+D++N PMF S + P Sbjct: 124 EKLAELKLKIEEAIDASATLSKFKKQLLIDITSEGLRIQIVDEQNRPMFASSKAELQPYA 183 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L +IG +L IS+ GHTDA P+ NW LS DRA ++ + L+ G+ E Sbjct: 184 KQILHEIGSMLNDVPNKISLSGHTDAVPYPTGDKGYSNWELSSDRANASRRELVAGGMDE 243 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G + L +P+N NRRI I++ +++ Sbjct: 244 SKLLRVVGLSSASLFDKENPLNPVNRRISIIIMNKKA 280 >gi|78064833|ref|YP_367602.1| flagellar motor protein MotB [Burkholderia sp. 383] gi|77965578|gb|ABB06958.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 338 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 147/338 (43%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPSKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQMKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI ++ + G+ + +L Sbjct: 61 YFNTPLKAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTQL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + + + R Sbjct: 109 AERLAKVGDEHSRSQEQGAQDRL------------------------------------- 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS P Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDNVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYSGGEGGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|206558533|ref|YP_002229293.1| flagellar motor protein MotB [Burkholderia cenocepacia J2315] gi|198034570|emb|CAR50435.1| chemotaxis protein MotB [Burkholderia cenocepacia J2315] Length = 339 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 51/337 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI ++ + G+ + Sbjct: 61 YFNMPLKAAILGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDG---- 104 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 SL K D + + + ++ E L L + + A++ Sbjct: 105 ----------------TTSLAERLAKAGDENSRSQAQGAQDRLEQTRLHDLQIKLMAAIE 148 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDRVEPY 192 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 193 MRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMD 252 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 253 EAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|254246760|ref|ZP_04940081.1| Flagellar motor protein [Burkholderia cenocepacia PC184] gi|124871536|gb|EAY63252.1| Flagellar motor protein [Burkholderia cenocepacia PC184] Length = 339 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 51/337 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI ++ + G+ + Sbjct: 61 YFNMPLKAAILGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDG---- 104 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 SL K D + + + ++ E L L + + A++ Sbjct: 105 ----------------TTSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIE 148 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPY 192 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 193 MRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMD 252 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 253 EAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|167838309|ref|ZP_02465168.1| flagellar motor protein MotB [Burkholderia thailandensis MSMB43] Length = 488 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ DQ II+K+ V+ ++ G+WK+ YADFMT +MAFFL+MW+++A K I Sbjct: 2 SKGKDQAIIVKR-VSQQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI + ++ ++ G+T L Sbjct: 61 YFNTPLKAAIFGS------------GDRSADDSSIVKGGGRDISSVEAGATRLTDGSTHL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + S + SL R + Sbjct: 109 ADRVAKKSEDDALAQAQGSLER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS+ P Sbjct: 132 EQVRLHDLQVKLMAAIEANPTLRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSNAVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNRK 289 >gi|107024396|ref|YP_622723.1| flagellar motor protein MotB [Burkholderia cenocepacia AU 1054] gi|116688278|ref|YP_833901.1| flagellar motor protein MotB [Burkholderia cenocepacia HI2424] gi|170731591|ref|YP_001763538.1| flagellar motor protein MotB [Burkholderia cenocepacia MC0-3] gi|105894585|gb|ABF77750.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116646367|gb|ABK07008.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] gi|169814833|gb|ACA89416.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 339 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 51/337 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPAKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S D S E N + S + + Sbjct: 61 YFNMPLKAAILGSG-----------------DRSSQESSIINGGGRDLSSVDAGTLRR-- 101 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 SL K D + + + ++ E L L + + A++ Sbjct: 102 -------------TDGTTSLAERLAKAGDDNSRSQAQGAQDRLEQTRLHDLQIKLMAAIE 148 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPY 192 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 193 MRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMD 252 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 253 EAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|89068739|ref|ZP_01156125.1| MotB [Oceanicola granulosus HTCC2516] gi|89045702|gb|EAR51764.1| MotB [Oceanicola granulosus HTCC2516] Length = 345 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 143/335 (42%), Gaps = 5/335 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 Q III++ ++ G WK+ YADFMT +MAFFL+MWII A+D++ + I YF Sbjct: 3 SEKQPIIIRRMTEDAHDGHHGGGWKVAYADFMTAMMAFFLLMWIIAASDEEKLRGIADYF 62 Query: 70 NPFGKNLMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 P A G+ D + + + + + +N +++ T + Sbjct: 63 TPSLVTADGAGSGLLDGEAVEGQGTRGGGVVPELPSFGQENPLEISANRTPEAPSVIVEY 122 Query: 129 NNIFYLSNSQQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + L + + H D E + E S + LA + Sbjct: 123 VPVEDLGDDPFARLHAAAGEVVDGETTPLDGAGSAPEASEGEAGTAASEAALAAAELAEQ 182 Query: 188 RKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R L+ L ++ ++ + +L + T G+ I+D MF S+ Sbjct: 183 RAAALEVLRGEVEERIAEDPELATFAENLLVDATDLGLRFQIVDHEGVAMFRSGSAEIEE 242 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGV 304 T ++ +GE + ++I GHTD+ PF NW LS DRA +A + L+ +GV Sbjct: 243 STRELIGVVGETIRGLPYPVAITGHTDSVPFSGARDGYSNWELSADRANAARRTLIAAGV 302 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RI +ISG A L++ P NRRI++L++ Sbjct: 303 DAARIVEISGLAATELRVPDIPDAPENRRIEVLMQ 337 >gi|171322726|ref|ZP_02911473.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171091928|gb|EDT37395.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 339 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S ++ D SI ++ G+ + Sbjct: 69 ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + + ++ E L L + + A++ L+ Sbjct: 105 --------TTSLADRVAKAGDQNSRSQAQGAQDRLEQTRLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELISGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|172059245|ref|YP_001806897.1| flagellar motor protein MotB [Burkholderia ambifaria MC40-6] gi|171991762|gb|ACB62681.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 339 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S ++ D SI ++ G+ + Sbjct: 69 ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + ++ E L L + + A++ L+ Sbjct: 105 --------TTSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDTQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++S NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDSENRRISVIVLNRK 289 >gi|115350223|ref|YP_772062.1| flagellar motor protein MotB [Burkholderia ambifaria AMMD] gi|115280211|gb|ABI85728.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 339 Score = 255 bits (650), Expect = 8e-66, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S ++ D SI ++ G+ + Sbjct: 69 ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + ++ E L L + + A++ L+ Sbjct: 105 --------TTSLADRVAKAGDQNSRAQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDESKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|170703865|ref|ZP_02894555.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170131226|gb|EDS99863.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 339 Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 50/329 (15%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K+VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I +YFN K Sbjct: 9 IVVKRVAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSVTPVQLKGIAEYFNTPLKA 68 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S ++ D SI ++ G+ + Sbjct: 69 ALFGS------------GDRSSQDSSIINGGGRDLSSADAGTLRRTDG------------ 104 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL K D + + + ++ E L L + + A++ L+ Sbjct: 105 --------TTSLADRVAKAGDQNSRSQAQGAQDRLEQARLHDLQIKLMAAIEANPTLRQF 156 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++I ++T G+ I I+D + PMF SS P +L++I Sbjct: 157 KQQI----------------RIDSTLMGLRIEIVDSQKRPMFAMSSDHVEPYMRDILREI 200 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 201 GKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELITGGMDEAKVLRVL 260 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A + +DP++ NRRI ++V +R+ Sbjct: 261 GLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|2275156|gb|AAB81408.1| MotB [Sinorhizobium meliloti] Length = 394 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 112/397 (28%), Positives = 181/397 (45%), Gaps = 57/397 (14%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN + N +N+ III ++ A ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK AI YFNP ++ + + Q + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLT 118 Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 + E NI + ++ ++ E +D Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAQSGPSTGAAGGEAYRD 178 Query: 157 L------------------------------CKSTDLEKSINKEENYFLPPLSKEKILAM 186 ++ + +K E + + A Sbjct: 179 PFDPDFWTKQVEVKDAGNTAESEVASAANSAREAASAPEVPDKAEGAKAADAPENQAPAE 238 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K + L +I L G A +++G+ G+L++I +Q + PMF S++P Sbjct: 239 NPQKEAEALKAEIEKELGGE-AGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQK 297 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ G+ E Sbjct: 298 ELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEE 357 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +R+ +ISGFA RL++ +D ANRRI+IL++ QG Sbjct: 358 ERVKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394 >gi|209515722|ref|ZP_03264585.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209503749|gb|EEA03742.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 336 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ + ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 3 SKDKDRAIVVKR-ASPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + ++ + + + D+S D S D Sbjct: 62 YFNQPLKITLWGGDRSAEDSSILKGGGR---DISTDAQGVTRSTD--------------- 103 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 +S ++EH + DS K + L + Sbjct: 104 -------GSSSRAEHTASHNNDDSVK-------------------------QLQGALERQ 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + + P Sbjct: 132 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDVVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGHTLNDVPNRIIVQGHTDAVPYAGGDKGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 252 DEAKVMRVLGLASAQNLNKADPLDPENRRISIIVLNRK 289 >gi|15964427|ref|NP_384780.1| flagellar motor protein MotB [Sinorhizobium meliloti 1021] gi|307311569|ref|ZP_07591210.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] gi|15073604|emb|CAC45246.1| Chemotaxis (motility protein B) transmembrane [Sinorhizobium meliloti 1021] gi|306899586|gb|EFN30215.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] Length = 394 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 112/397 (28%), Positives = 180/397 (45%), Gaps = 57/397 (14%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN + N +N+ III ++ A ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MNDESNHNGKNE--IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK AI YFNP ++ + + Q + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLT 118 Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 + E NI + ++ ++ E +D Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAQSGPSTGAAGGEAYRD 178 Query: 157 L------------------------------CKSTDLEKSINKEENYFLPPLSKEKILAM 186 ++ +K E + + A Sbjct: 179 PFDPDFWTKQVEVKDAGNTAESDVASAANSAREAASGPGVPDKAEGAKAADAPENQAPAE 238 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K + L +I L G A +++G+ G+L++I +Q + PMF S++P Sbjct: 239 NPQKEAEALKAEIEKELGG-GAGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQK 297 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ G+ E Sbjct: 298 ELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEE 357 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +R+ +ISGFA RL++ +D ANRRI+IL++ QG Sbjct: 358 ERVKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394 >gi|186477722|ref|YP_001859192.1| flagellar motor protein MotB [Burkholderia phymatum STM815] gi|184194181|gb|ACC72146.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 369 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 56/339 (16%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKR-AAPKKGGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFN-PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN P L + D P D Sbjct: 61 YFNQPLKITLWGGDRSAVDSSQIPGGGRDISTD--------------------------- 93 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + Q++ N + + D + + Sbjct: 94 ------KDGITHQTDGSTNRAEHTAARADDQALQ------------------QLQGAVER 129 Query: 187 KRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + RL DL K+ + + V + + ++T G+ I I+D + PMF + +I Sbjct: 130 REQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLQGLRIEIVDTQKRPMFATAQAIVQ 189 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303 P +LQ IG L I ++GHTDA P+ NW LS DRA ++ + L+ G Sbjct: 190 PYMHDILQAIGNTLNDVPNRIVVQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGG 249 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + E ++ ++ G A + +DP++ NRRI I+V +++ Sbjct: 250 MDEAKVLRVLGLASTQNLNKADPLDPENRRISIIVLNKR 288 >gi|254497974|ref|ZP_05110737.1| flagellar motor protein MotB [Legionella drancourtii LLAP12] gi|254352751|gb|EET11523.1| flagellar motor protein MotB [Legionella drancourtii LLAP12] Length = 293 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 148/343 (43%), Gaps = 64/343 (18%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + +E Q IIIKK V ++ GSWKI YADF+T +MAFFL+MW+I + + Sbjct: 1 MSENENSAKEKSQPIIIKK-VKKHGHAHHGGSWKIAYADFVTAMMAFFLLMWLIASLNKA 59 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I +YF K+ + + + +K G Sbjct: 60 QREGIAEYFKQPI-----------------------KVTFFGGKDVGNQQIRVKGGGLQI 96 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + ++ S + P + Sbjct: 97 EDTNGQVSTTKMNDSKDAK------------------------------------PQDIE 120 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDK 239 + + ++L++L +I+ ++ + N +K +L E G+ I +ID + PMFD Sbjct: 121 VIQSSQTQTQKLEELKSEINLSIQNDPSLNGLKDRMLMEVVHDGLRIQLIDNQKNPMFDV 180 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI---ARDNWRLSLDRAYSAY 296 S P+ + KI ++L ++I+G+TDA P+ N NW LS RA +A Sbjct: 181 GSEKLNPQFEPIFTKISKLLNGVPNKVTIQGYTDAHPYHNPDELEYTNWELSTQRANAAR 240 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 + L+K+G+ E+++ K+SGF+ DP N+ NRRI I+V Sbjct: 241 RALIKAGLDENKVMKVSGFSSTMPLDKKDPFNAINRRISIIVM 283 >gi|148260894|ref|YP_001235021.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146402575|gb|ABQ31102.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 371 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 14/339 (4%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--FG 73 +I ++ I + ++ G+WK+ YADF+T +MAFFL+MW+INAT + + + YF+ Sbjct: 18 LIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFSQANVL 77 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + F P ++ + + ++ + N V ++ T Q +Q + Sbjct: 78 NRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYQVPHTPQGQQIRPDHPTGND 137 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR----- 188 + N+ K + + + +L+K + P ++ Sbjct: 138 MVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAPSGEKAAAGTGGAIGGL 197 Query: 189 ------KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + R + +I ++ ++ K V T G+ I I+D PMF S Sbjct: 198 APGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKRPMFALGS 257 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 + P P T+ +L KI +L+ + I I G+TDA P+ +DNW LS++RA + VL+K Sbjct: 258 ARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANATRAVLVK 317 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +G + I+++SG+A +L I S+P+ +ANRR+ ILV Sbjct: 318 AGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILVVR 356 >gi|187925787|ref|YP_001897429.1| flagellar motor protein MotB [Burkholderia phytofirmans PsJN] gi|187716981|gb|ACD18205.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 335 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + + Sbjct: 61 YFNQPLKITLWGGD-------------------------------------------RSA 77 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 E++ + +TR SE + + + S + + + L + Sbjct: 78 EDSSILKGGGRDISTDAQGVTRSSEGSNNRAEHSAAHGSEDSIKQ-------LQGELERR 130 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + P Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIGGGM 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DPM+ NRRI I+V +R+ Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288 >gi|134294329|ref|YP_001118064.1| flagellar motor protein MotB [Burkholderia vietnamiensis G4] gi|134137486|gb|ABO53229.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 338 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 53/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKSKDRAIVVKR-VAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSSATPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN + + S ++ D SI ++ + G+T + L Sbjct: 61 YFNTPLQAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTTRRTDGSTSL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + ++ R + Sbjct: 109 ADRVAKKGEDTAQAQAQGAIER-------------------------------------R 131 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + + + ++T G+ I I+D + PMF SS+ P Sbjct: 132 EQARLHDLQIKLMAAIEANPTLRQFRQQIRIDSTLMGLRIEIVDSQKRPMFAMSSNNVEP 191 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG+ L I ++GHTDA P+ NW LS DRA ++ + L+ G+ Sbjct: 192 YMRDILREIGKTLNDVPNRIIVQGHTDAVPYAGGEGGYSNWELSADRANASRRELIAGGM 251 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 252 DEAKVLRVLGLASTQNLNKADPLDPENRRISVIVLNRK 289 >gi|323527738|ref|YP_004229891.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323384740|gb|ADX56831.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 335 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A + ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASSAQLKGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + ++ + + + D+S D + D I +++ + Sbjct: 61 YFNQPLKITLWGGDRSAEDSSILKGGGR---DISTDSQGVTRTSDGSINRSDRTVAHGSE 117 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + L + Sbjct: 118 DAM-----------------------------------------------KQLQGELERR 130 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + P Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVEP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA + NW LS DRA ++ + L+ G+ Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGGM 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DPM+ NRRI I+V +R+ Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNRK 288 >gi|307318924|ref|ZP_07598355.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306895338|gb|EFN26093.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] Length = 394 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 111/397 (27%), Positives = 181/397 (45%), Gaps = 57/397 (14%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN + N +N+ III ++ A + ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MNDESNHNGKNE--IIIVRRSADNHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK AI YFNP ++ + + Q + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLT 118 Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 + E NI + ++ ++ E +D Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAQSGPSTGAAGGEAYRD 178 Query: 157 L------------------------------CKSTDLEKSINKEENYFLPPLSKEKILAM 186 ++ + + E + + A Sbjct: 179 PFDPDFWTKQVEVKDAGNTAERDVASAANSAREAASAPEVPDNAEGAKAADAPENQAPAE 238 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K + L +I L G A +++G+ G+L++I +Q + PMF S++P Sbjct: 239 NPQKEAEALKAEIEKELGGE-AGRLLEGLAVTPAEGGLLVTISEQTDAPMFAVGSAVPQK 297 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ G+ E Sbjct: 298 ELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLEE 357 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +R+ +ISGFA RL++ +D ANRRI+IL++ QG Sbjct: 358 ERVKQISGFADRRLQVPNDAYAPANRRIEILLQSGQG 394 >gi|326404291|ref|YP_004284373.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301] gi|325051153|dbj|BAJ81491.1| chemotaxis protein MotB [Acidiphilium multivorum AIU301] Length = 371 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 14/339 (4%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--FG 73 +I ++ I + ++ G+WK+ YADF+T +MAFFL+MW+INAT + + + YF+ Sbjct: 18 LIIRREEIVEGGHHGGAWKVAYADFVTAMMAFFLLMWLINATTEAQRVGLADYFSQANVL 77 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + F P ++ + + ++ + N V ++ T Q +Q + Sbjct: 78 NRAASGEGKPFGGSTPFDKGALSSDRGAVRVTVGHNPVSYEVPHTPQGQQIRPDHPTGND 137 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR----- 188 + N+ K + + + +L+K + P ++ Sbjct: 138 MVNTSPGAGHKPRASGATASNAAPKPAPELQKPASPAAGARSAPSGEKAAAGTGGAIGGL 197 Query: 189 ------KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + R + +I ++ ++ K V T G+ I I+D PMF S Sbjct: 198 APGNLGEARFRTAGSEIRQMMAQDPDLASLSKQVSVHVTPRGLRIQIMDAHKRPMFALGS 257 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 + P P T+ +L KI +L+ + I I G+TDA P+ +DNW LS++RA + VL+K Sbjct: 258 ARPNPMTLELLTKIAPILSRLGDRIRIAGYTDARPYVAGPKDNWDLSVERANATRAVLVK 317 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +G + I+++SG+A +L I S+P+ +ANRR+ ILV Sbjct: 318 AGFPKRLIARVSGYADRKLLIPSNPLAAANRRVGILVVR 356 >gi|296157481|ref|ZP_06840316.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295892253|gb|EFG72036.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 335 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 148/338 (43%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + ++ + + + D+S D S D Sbjct: 61 YFNQPLKVTLWGGDRSAEDSSILKGGGR---DISTDAQGVTRSTD--------------- 102 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + E+S++ + L E L + Sbjct: 103 ------------------------------GSNNRSERSVSHNNEDSMKQLQGE--LERR 130 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + P Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGGM 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DPM+ NRRI I+V +++ Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNKK 288 >gi|91776291|ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus flagellatus KT] gi|91710278|gb|ABE50206.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 308 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 141/330 (42%), Gaps = 60/330 (18%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ K++ ++ G+WKI YADF+T +MAFFL+MW++ +T + I +YF K Sbjct: 8 IVVKRINKHAGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKADLQGISEYFKTPLKV 67 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 M G + + K + Q ++ + ++ Sbjct: 68 AMQGGSGA-----------------GASDSVLKGGGNDMTKKQGQIRRAEDIDARKKPDL 110 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + Q E K L + E + + ++ D +++ Sbjct: 111 KTAQEEVAKAELEKLKELKRRIEEAIDASETLR--------------------------- 143 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K +L + T G+ I I+D++N PMF S + P +L +I Sbjct: 144 --------------QFKKQLLLDITTEGLRIQIVDEQNRPMFASSKAELQPYARQILHEI 189 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G++L IS+ GHTDA+P+ + NW LS DRA ++ + L+ G+ E+++ ++ Sbjct: 190 GQLLNDVPNKISLSGHTDAAPYPSGERYYSNWELSSDRANASRRELVSGGMKEEKLLRVV 249 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G + L +P+N NRRI I++ +++ Sbjct: 250 GLSSAVLFDKDNPLNPINRRISIIIMNKKA 279 >gi|307731388|ref|YP_003908612.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307585923|gb|ADN59321.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 335 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 146/338 (43%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A + ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKDKDRAIVVKRS-APKKSGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + + + I I+ ++ + + + +R Sbjct: 61 YFNQPLKITLWGG---------DRSAEDSSILKGGGRDISTDAQGVTRSTDGSSNRAERT 111 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ S Q + L + Sbjct: 112 VSHSNEDSMKQ-----------------------------------------LQGELERR 130 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + P Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA + NW LS DRA ++ + L+ G+ Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAVQYAGGEKGYSNWELSADRANASRRELIAGGM 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DP++ NRRI I+V +R+ Sbjct: 251 DEAKVMRVLGLASTQNLNKADPLDPENRRISIIVLNRK 288 >gi|330501613|ref|YP_004378482.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01] gi|328915900|gb|AEB56731.1| flagellar motor protein MotB [Pseudomonas mendocina NK-01] Length = 334 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 61/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLVMW++++ + K+AI YF Sbjct: 2 ENNQPIIVKR-VKKTAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKRAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +AS D P + + ++ + E Sbjct: 61 QDPIGFTESASPYAIDLGGTPTPAPERTLNPDVSE------------------------- 95 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 T +S+ + + +E K E L L +E ++ Sbjct: 96 ------------------TPESQPDETGVSTDQIETLAEKMEQERLELLLQELQNKVEEN 137 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ +I LFE T+ G+ I I+D N PMF S+ P Sbjct: 138 PELQRFKDQI----------------LFEITQDGLRIQIMDAENRPMFALGSAELQPYFE 181 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA PF NW LS +RA +A + L+ G +++ Sbjct: 182 DILLAMADTIRAVPNKISISGHTDAKPFAGRGDFGNWELSSNRANAARRTLVAGGYPDEQ 241 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +DP N NRRIDI+V ++ Sbjct: 242 VARVVGYASSALFDRADPFNPVNRRIDIVVLTKKA 276 >gi|254293721|ref|YP_003059744.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] gi|254042252|gb|ACT59047.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] Length = 303 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 42/330 (12%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 ++ I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN T D K+ I YF P Sbjct: 4 NRPIVIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPDQKRGIADYFAP 63 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + ++ D +G T+ + R Sbjct: 64 ASVSK------------------------------SRQGSDGMLGGTSFQDDGARSGGTN 93 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+Q+ + + T+++ S ++ + + K +AM+ + Sbjct: 94 RPMPESKQTASKRRTSTKNAGTP-----------SNETNKSKEVSQSAMSKAIAMREQAE 142 Query: 192 LQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + + + + + + K ++ + T G+ I I+DQ MF +S+ PLP Sbjct: 143 FERAEQSLRQAMQDMPDLAALSKHLVIDQTPEGMRIQIVDQEGRAMFAAASAKPLPRAEK 202 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L + +V+ +SI GHT P NW+LS DRA SA +L SG+ DRI Sbjct: 203 ILAAVSQVIMKLPNRVSISGHTGDLPTGVEGYSNWQLSSDRANSARSILESSGLDADRIY 262 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 ++SG A DP NRRI I++ Sbjct: 263 QVSGKAGSEPLYPDDPDLPGNRRISIVLLR 292 >gi|170694367|ref|ZP_02885521.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170140790|gb|EDT08964.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 335 Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I + Sbjct: 2 SKDKDRAIVVKR-AAPKKAGHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN KI L + ++S LK G + Q + Sbjct: 61 YFNQPL-----------------------KITLWGGDRSAEDSSILKGGGRDISTDAQGV 97 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + +N + K+S + + L + Sbjct: 98 TRSTDGSNNRAERTVSKSSEDSMKQ---------------------------LQGELERR 130 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + P Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATARDQVEP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGGM 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DPM+ NRRI ++V +R+ Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISVIVLNRK 288 >gi|114765236|ref|ZP_01444368.1| OmpA/MotB [Pelagibaca bermudensis HTCC2601] gi|114542371|gb|EAU45399.1| OmpA/MotB [Roseovarius sp. HTCC2601] Length = 329 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 146/335 (43%), Gaps = 20/335 (5%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+Q I+IK+ D ++ G+WK+ YADFMT +MAFFL++WI+ A+D++ + + YF Sbjct: 5 NEQPIVIKRIEEDDGHGHHGGAWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLADYFT 64 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P G+ D + + D G + + N Sbjct: 65 PSLSQSGGRGDGLLDGTVLADDGVMSGTD----------------GPATPVQLPSFGQEN 108 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +S+ + N + + +S + + + E ++ + Sbjct: 109 PLAVFDSRLRDTNPNIQVEYDTRPEGRQESATINEGSDPMETARAQVAAERAQQEWDEAQ 168 Query: 191 RLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + L ++I + G ++ + F+ T G+ I I+D+ MF S+ T Sbjct: 169 --ERLEQQIMQEVVGSPELESYSDNLRFDRTENGLEIQIVDKSGESMFATGSARIQDRTR 226 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ I + + ++I GHTD+ P+ R NW LS DRA + +VLM +GVS +R Sbjct: 227 DLLRIIADAVVELPNELTISGHTDSVPYTRAATYSNWELSADRANATRRVLMANGVSPER 286 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 I++ISG A P NRRI + V+ + Sbjct: 287 ITRISGLADTEPLNPGSPDAPENRRISVTVQYPEA 321 >gi|91785660|ref|YP_560866.1| flagellar motor protein MotB [Burkholderia xenovorans LB400] gi|91689614|gb|ABE32814.1| outer membrane porin, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 335 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 54/338 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N++ D+ I++K+ A ++ G+WK+ YADFMT +MAFFL+MW++++ K I Sbjct: 2 NKDKDRAIVVKR-AAPKKASHHGGAWKLAYADFMTAMMAFFLLMWLLSSASTVQLKGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN KI L + ++S LK G + Q + Sbjct: 61 YFNQPL-----------------------KITLWGGDRSAEDSSILKGGGRDISTDAQGV 97 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + +N E+S++ + L E L + Sbjct: 98 TRSTDGSNN-------------------------RSERSVSHNNEDSVKQLQGE--LERR 130 Query: 188 RKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL K+ + + V + + ++T TG+ I I+D + PMF + P Sbjct: 131 EQVRLHDLQVKLMAAIEANPVLRQFKQQIRIDSTLTGLRIEIVDSQKRPMFATAKDQVEP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L I ++GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 191 YMRDILREIGHTLNDVPNRIIVQGHTDAAQYAGGEKGYSNWELSADRANASRRELIAGGM 250 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + +DPM+ NRRI I+V +++ Sbjct: 251 DEAKVMRVLGLASTQNLNKADPMDPENRRISIIVLNKK 288 >gi|285019703|ref|YP_003377414.1| flagellar motor protein [Xanthomonas albilineans GPE PC73] gi|283474921|emb|CBA17420.1| probable flagellar motor protein [Xanthomonas albilineans] Length = 383 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 58/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ YADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 ETKSTVIIRRVKKVQGGGHHGGAWKVAYADFVTAMMAFFLVLWLVAATTKEQRAAIAEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K + + QR N Sbjct: 63 RNPS-------------------PLAGKSPAPSPGMAGPGGASTSMIKLGGSGELQRGNN 103 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S S + + K S K K Sbjct: 104 KDPFGSKSLKGDDSKIS-------------------------------------QREKEK 126 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + A + +L + T G+ I I+D+ N PMFD S++ P T Sbjct: 127 QRLESLMQEMKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKENRPMFDLGSAVLKPYT 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ + ISI GHTD + + NW LS DRA +A + L+ G+SED Sbjct: 187 RGILHELSGFINQVPNHISITGHTDVTQYSGKNGYSNWELSADRANAARRELVAGGMSED 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++S++ G + L P N NRRI I+V + Sbjct: 247 KVSRVVGLSSSVLFDKQVPNNPINRRISIVVMTKDA 282 >gi|332161302|ref|YP_004297879.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665532|gb|ADZ42176.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 409 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 73/336 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +++ + D +P + Sbjct: 63 FRTPLKVALSSGEKSSDSTSPIPGGGDDP------------------------------- 91 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ ++ K D E+S ++E Y L L ++ ++ Sbjct: 92 ----------------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIES 127 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L + L G+ I IID +N PMF S+ P Sbjct: 128 DPRLKALRPHL----------------LINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYM 171 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L IS+ GHTD P+ + NW LS DRA ++ + L+ G+ E Sbjct: 172 RDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDE 231 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + NRRI ILV ++Q Sbjct: 232 GKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 >gi|318605218|emb|CBY26716.1| flagellar motor rotation protein MotB [Yersinia enterocolitica subsp. palearctica Y11] Length = 409 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 73/336 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +++ + D +P + Sbjct: 63 FRTPLKVALSSGEKSSDSTSPIPGGGDDP------------------------------- 91 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ ++ K D E+S ++E Y L L ++ ++ Sbjct: 92 ----------------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIES 127 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L + L G+ I IID +N PMF S+ P Sbjct: 128 DPRLKALRPHL----------------LINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYM 171 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L IS+ GHTD P+ + NW LS DRA ++ + L+ G+ E Sbjct: 172 RDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDE 231 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + NRRI ILV ++Q Sbjct: 232 GKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 >gi|327482425|gb|AEA85735.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166] Length = 337 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 94/335 (28%), Positives = 141/335 (42%), Gaps = 64/335 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N Q II+K+ + ++ G+WKI +ADF T +MAFFLVMW++++ + KK I YF Sbjct: 2 DNTQPIIVKRVKKVA-GGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E +S + IDL + + ++ Sbjct: 61 Q--------------DPIGFTESASPHVIDLGGTPTPSPDRTLNQV-------------- 92 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + E DSE+ + L + + E+ Sbjct: 93 ---------EQEPASKDAQFDSEQAETLAEQLERERLDLV-------------------- 123 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ+L K+ +LFE T+ G+ I I+D N PMF S+ P Sbjct: 124 --LQELQNKVDENPE---LQKFKDQILFEITQDGLRIQIMDAENRPMFALGSAQLQPYFE 178 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E +A ISI GHTDA PF NW LS RA +A + L+ G E++ Sbjct: 179 DILLALVETIAAVPNKISISGHTDAKPFSGRGDFGNWELSASRANAARRTLVYGGYPEEQ 238 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 I+++ G+A L DP N NRRIDILV ++ Sbjct: 239 IARVVGYASSALFDRKDPFNPVNRRIDILVLTKKA 273 >gi|123442804|ref|YP_001006781.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089765|emb|CAL12618.1| chemotaxis MotB protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 414 Score = 249 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 73/336 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +++ + D +P + Sbjct: 63 FRTPLKVALSSGEKSSDSTSPIPGGGDDP------------------------------- 91 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ ++ K D E+S ++E Y L L ++ ++ Sbjct: 92 ----------------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIES 127 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L + L G+ I IID +N PMF S+ P Sbjct: 128 DPRLKALRPHL----------------LINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYM 171 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L IS+ GHTD P+ + NW LS DRA ++ + L+ G+ E Sbjct: 172 RDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLDE 231 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + NRRI ILV ++Q Sbjct: 232 GKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 >gi|304392497|ref|ZP_07374437.1| chemotaxis protein MotB [Ahrensia sp. R2A130] gi|303295127|gb|EFL89487.1| chemotaxis protein MotB [Ahrensia sp. R2A130] Length = 364 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 107/361 (29%), Positives = 173/361 (47%), Gaps = 32/361 (8%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q III ++ I + ++ G+WKI +ADFMT +MA FLV+W+INA +++TKK++ YF Sbjct: 5 DNEQPIIIVRRNRIAEDGHHGGAWKIAFADFMTAMMALFLVLWLINAANEETKKSVASYF 64 Query: 70 NPFG-KNLMTASKGIFDEQNP----PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 NP + + KGI+ P E + D+ T G+ K++ Sbjct: 65 NPVKLVDRNRSKKGIWKSAGPSIETGEETEAGTDTQPEDKDSTSGPASSGAGADGSKREA 124 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-------------------TDLEK 165 + + + L +E + + +S TD Sbjct: 125 EFIADPFSELEEIASAERENMAAKTAAVGMAGDEESDAIRDPFSPVYWKPEPETPTDEIT 184 Query: 166 SINKEENYFLPPLSKEKILAMKRKKR------LQDLAKKISSTLSGLVADNIVKGVLFET 219 I EE P ++ E + + D+ K++ + ++ V D + Sbjct: 185 PIRAEEEKPQPEITSEVSADDEAAREETDDAGASDVLKELKAAVAKAVDDG--PRLDVTP 242 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G+LISI D + MF+ SS+P ++ + + +VL+ + I GHTDA PFR Sbjct: 243 TPDGLLISITDDFDFAMFETGSSVPSGRLVLAMDAVAQVLSERPGKLHIHGHTDARPFRG 302 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RDNW LS RA+SA +L++ G E RI +ISGFA RLK+ +P ++NRRI++L+E Sbjct: 303 GERDNWTLSSARAHSARYMLLRGGFGEKRIVEISGFADRRLKLVDEPDAASNRRIELLLE 362 Query: 340 D 340 Sbjct: 363 P 363 >gi|288962674|ref|YP_003452968.1| chemotaxis protein [Azospirillum sp. B510] gi|288914940|dbj|BAI76424.1| chemotaxis protein [Azospirillum sp. B510] Length = 347 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 144/340 (42%), Gaps = 11/340 (3%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 II+K+ + D + G+WK+ YADF+T +M FFLVMW++N T + +K I YFNP Sbjct: 8 PPIIVKRHLGSHDEEEHNGTWKLAYADFVTAMMTFFLVMWLMNITTTEQRKGIADYFNPV 67 Query: 73 GKNLMTASK-GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + + G+ ++ + S + + D+ S + + +Q ++ + Sbjct: 68 AVSQSNSGADGMLAGRSVDKSGSLTTPNAAGDQASPVASPPVVASVGDSDRQPAGRKDPM 127 Query: 132 FYLSNS--------QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + + + + + S + L L + + Sbjct: 128 PHPPGGTVPPVDLLRPASESAPGAPATEPPAPQMAPQMAPQASAPQATRAELEALLERQS 187 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 + K L+ L + + ++ N ++G ++ + G+ + + DQ MF S+ Sbjct: 188 SELGEKVALESLERDLRQRIAASPDLNALQGSLVIQQVPEGLRVQLTDQARFSMFKVGSA 247 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK 301 + +++ + LA I I GHTD + + NW LS DRA +A + L+ Sbjct: 248 QMNDQGRRLMRMVASALAAVPNPIGITGHTDGLGYAADAKYGNWELSSDRANAARRELIA 307 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 SG+ RI ++ G A A P++ +NRRI I + R Sbjct: 308 SGIPNTRIVRVEGRADLDHFGAGGPLDPSNRRISITLLRR 347 >gi|302878239|ref|YP_003846803.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581028|gb|ADL55039.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 328 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 59/339 (17%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +N + I+IK+ + ++ G+WKI YADF+T +MAFFL+MW++ +T I Q Sbjct: 3 EDKNKRPIVIKRIKKVA-AGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLAGISQ 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + + I + +T+ + +K G Sbjct: 62 YFKTPLKVALAGGS---------GSGDSSSIIKGGGKDLTRTTGQVKAG----------- 101 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 D+ + ++ Y + K Sbjct: 102 ----------------------------DVASDKRIINVKESQQEYL-------RAEREK 126 Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +L++L + I + +L + T G+ I I+D++N PMF + P Sbjct: 127 EMTKLKELKESIEKAIDNSEKLKQFKSQILLDITSEGLRIQIVDEKNRPMFQSGRAQLEP 186 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 T +L IG+ L +SI GHTDAS + NW LS DRA ++ + L+ G+ Sbjct: 187 YTREILHAIGQTLNDVPNKVSISGHTDASVYGGGGIGYSNWELSADRANASRRELIAGGM 246 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++I ++ G + L DP++ NRRI +++ +++ Sbjct: 247 ADEKIVRVVGLSSAVLFKKEDPLSPTNRRISLIIMNKKA 285 >gi|291613013|ref|YP_003523170.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291583125|gb|ADE10783.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 341 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 147/337 (43%), Gaps = 59/337 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ + I+IK+ + ++ G+WKI YADF+T +MAFFL+MW++ +T + I +YF Sbjct: 4 EDKRPIVIKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K + + I + +T+ + +K G +K+ L+ Sbjct: 63 KTPLKVALMGGT---------GSGDSSSIIKGGGQDLTRATGQVKSGELLPEKKVINLKA 113 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 E++ K Sbjct: 114 T----------------------------------------------QEEFERLERKKEL 127 Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L+DL I + V K +L + T G+ + I+D++N PMF SS P T Sbjct: 128 EKLKDLKANIEKAIDTDVKLKKYKNQILLDLTTEGLRVQIVDEKNRPMFQSGSSELEPYT 187 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L +IG++L IS+ GHTDA P+ NW LS DRA ++ + L+ G++E Sbjct: 188 KDILHEIGQMLNTMPNKISLSGHTDAQPYVTADRHYSNWELSADRANASRRELINGGLAE 247 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 D+I ++ G + L + P+N NRRI I+V +++ Sbjct: 248 DKIVRVVGLSSAVLFDKAQPLNPINRRISIIVMNKRA 284 >gi|74317262|ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus denitrificans ATCC 25259] gi|74056757|gb|AAZ97197.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans ATCC 25259] Length = 319 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 63/336 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E II+K+ + ++ G+WKI YADF+T +MAFFL+MW++ +T + I +YF Sbjct: 3 EQKAPIIVKR-IKKTSGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTRGDLEGIAEYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + + Q + K Q K+ + + Sbjct: 62 KT-----------------PLKVAMQGGTGSGDSSSVIKGGGADLTRKNGQIKKGEVDAD 104 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 Y + Q+E L Sbjct: 105 RKSYNLKAAQAE------------------------------------------LERLET 122 Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +L+ L +++ + + + +L + T G+ I I+D++N PMF+ +S+ P T Sbjct: 123 AKLKQLKQRLEAAIDRNPTLKQFKRQLLIDITSEGLRIQIVDEQNRPMFNLASAELQPYT 182 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 V+L +I +VL IS+ GHTDA P+ N NW LS DRA ++ + L+ G+SE Sbjct: 183 KVILHEIAQVLNDVENRISLSGHTDARPYANGERGYSNWELSADRANASRRELIVGGMSE 242 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ ++ G A + P + NRRI I+V +++ Sbjct: 243 AKMLRVVGLASSVPFTQAKPFDPVNRRISIIVLNKR 278 >gi|209964663|ref|YP_002297578.1| chemotaxis MotB protein [Rhodospirillum centenum SW] gi|209958129|gb|ACI98765.1| chemotaxis MotB protein [Rhodospirillum centenum SW] Length = 364 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 144/314 (45%), Gaps = 3/314 (0%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK-GIFDEQNPP 90 +WK+ YADF+T +MAFFL++W++N T + K+ I YF+P + + G+ Q Sbjct: 28 AWKVAYADFVTAMMAFFLLLWLLNVTTSEQKQGIADYFSPASPSKQESGAGGVLGGQTIT 87 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ++ + S+ S Q + + + + + Sbjct: 88 VPGAKINQSSPPQLTVPVPSMPASANSEEQVEDFDSSTKGRPDGTQDKVGQGEAGDSGGP 147 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-D 209 + D + + +K + + ++ LA +++ Q A+++ + + Sbjct: 148 GDSRLDALEKAGEIRQADKNRDGKIDEKELKEALAKLEQEQFQRTAQELRQAIQQVPELR 207 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + + ++ + T G+ I ++DQ MF S+ LP+T ++ + + + +S+ Sbjct: 208 ELSQNLVIDNTPEGLRIQLVDQEGYSMFPSGSANMLPQTAQLMALVAQAVGKLPNHLSVS 267 Query: 270 GHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTD++PF +R NW LS +RA ++ + L+ +GV E+RI +++G A DP + Sbjct: 268 GHTDSTPFAAGSSRSNWDLSTERANASVRALLAAGVPENRIDQVTGRADRDHLFPDDPRS 327 Query: 329 SANRRIDILVEDRQ 342 NRR+ I++ Q Sbjct: 328 PRNRRVSIVLLREQ 341 >gi|257094100|ref|YP_003167741.1| flagellar motor protein MotB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046624|gb|ACV35812.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 319 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 58/337 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ + I+IK+ + ++ G+WKI YADF+T +MAFFL+MW++ +T K I +F Sbjct: 2 EDVRPIVIKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTASGDLKGIADFF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K + + + +T+ S +K G + K + L+ Sbjct: 61 QNPLK---------IASTGGSGTGDSSSVLKGGGKDLTRRSGQVKSGDIDSKSKTVNLKE 111 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 K + K Sbjct: 112 TNAE---------------------------------------------QARKEFEEREK 126 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L +L + I + A +L + T G+ I I+D++N PMFD SS+ P T Sbjct: 127 ALLGELKESIEKLIESNPALKQFKSQLLIDITSEGLRIQIVDEQNRPMFDTSSAELKPHT 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306 V+L++IG+ L +S+ GHTDA+ + + NW LS +RA ++ + L+ G+ E Sbjct: 187 RVILREIGKALNAVHNKLSLSGHTDAAQYGGGDKGFSNWELSANRANASRRELIAGGMDE 246 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G A L +DP++S NRRI I+V +++ Sbjct: 247 HKVLRVVGLASTVLFDKNDPLSSINRRISIVVLNKRA 283 >gi|154253326|ref|YP_001414150.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157276|gb|ABS64493.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1] Length = 298 Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 84/331 (25%), Positives = 139/331 (41%), Gaps = 49/331 (14%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N Q II+KK + ++ G+WKI YADF+T +MAFFL+MW+I+ T + K+ + YF Sbjct: 5 NQQPIILKKVKKVVH-GHHGGAWKIAYADFVTAMMAFFLLMWLISMTTPEQKQGLADYFA 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + T+ G G+ ++ + Sbjct: 64 PSNVSRSTSGAGGI-----------------------------MGGTAFDEEGARMPGTK 94 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + K+ T + + EKS E N+ S + AM+ Sbjct: 95 PQVVMTISTPAQPKSPETAEEKAAAAQVDKLLKEKSARDERNFRSAAESIRQ--AMRENP 152 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L +L+ + V+ + T G+ I I+DQ MF ++ P T Sbjct: 153 DLAELS----------------RNVIIDETPEGLRIQIVDQDGRSMFPSGNAEPYERTRQ 196 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +++++ +L +SI GHTDA+P NW L+ DRA + ++L +G+S DRI Sbjct: 197 LIEEVSNILIKLPNRVSISGHTDANPVEGRPGYSNWELTADRANATRRILAGAGLSNDRI 256 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ G A DP +ANRR+ I++ Sbjct: 257 YQVIGKADSEPLFPEDPYMAANRRLSIVLLR 287 >gi|220934494|ref|YP_002513393.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995804|gb|ACL72406.1| chemotaxis MotB protein [Thioalkalivibrio sp. HL-EbGR7] Length = 290 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 144/334 (43%), Gaps = 65/334 (19%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + Q I++KK + ++ G+WKI +ADF T +MAFFL++WI+ TDD+ K AI ++ Sbjct: 4 DDKKQPIVVKKIIKK--GGHHGGAWKIAFADFATAMMAFFLLLWILGFTDDEQKAAISEF 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F + + F+ +S + ID + Sbjct: 62 FQNPSAFMGASPTPAFEAG---TGTSPSLIDFEGAIDMAP-------------------- 98 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 Q +E ++ +E+ +E L L + A++R Sbjct: 99 --------EQMAELDAETIEELAEQ----------------QEKERLEALMQALEEAIER 134 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L+ ++ L + T G+ I I+D+ N PMFD S+ + Sbjct: 135 SQALEPFKDQL----------------LLDITPEGLRIQIVDKENRPMFDLGSAQLRGYS 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +LQ++G ++ ISI GHTDA PF NW LS DRA +A + L+ G+ E + Sbjct: 179 TAILQELGGLINQVPNKISITGHTDARPFLRPNYSNWELSSDRANAARRALVSGGMDEAK 238 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 I ++ G A L ++P N NRRI I+V R+ Sbjct: 239 IGRVVGLASTVLFDKANPENPINRRISIIVMTRE 272 >gi|15600146|ref|NP_253640.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAO1] gi|107104052|ref|ZP_01367970.1| hypothetical protein PaerPA_01005125 [Pseudomonas aeruginosa PACS2] gi|116053102|ref|YP_793421.1| flagellar motor protein MotB [Pseudomonas aeruginosa UCBPP-PA14] gi|218894048|ref|YP_002442917.1| flagellar motor protein MotB [Pseudomonas aeruginosa LESB58] gi|254238332|ref|ZP_04931655.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719] gi|254244159|ref|ZP_04937481.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192] gi|313109955|ref|ZP_07795882.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016] gi|9951234|gb|AAG08338.1|AE004908_4 chemotaxis protein MotB [Pseudomonas aeruginosa PAO1] gi|115588323|gb|ABJ14338.1| chemotaxis protein MotB [Pseudomonas aeruginosa UCBPP-PA14] gi|126170263|gb|EAZ55774.1| chemotaxis protein MotB [Pseudomonas aeruginosa C3719] gi|126197537|gb|EAZ61600.1| chemotaxis protein MotB [Pseudomonas aeruginosa 2192] gi|218774276|emb|CAW30093.1| chemotaxis protein MotB [Pseudomonas aeruginosa LESB58] gi|310882384|gb|EFQ40978.1| chemotaxis protein MotB [Pseudomonas aeruginosa 39016] Length = 347 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 57/336 (16%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E +S IDL + Sbjct: 61 Q--------------DPIGFSESASPYVIDLGGTPTPAPD-------------------- 86 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E I+ E+++ + E + + Sbjct: 87 --------------------KTLNPQVQAQPDSNESRISPEQDHQVNADQAENLAEQVER 126 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL L +++ + + + + + FE TR G+ I I+D N PMFD S+ P Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + E + ISI GHTDA P+ N NW LS +RA +A + L+ G E Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +I+++ G+A RL DP+N NRRIDI+V R+ Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282 >gi|152985187|ref|YP_001351001.1| flagellar motor protein MotB [Pseudomonas aeruginosa PA7] gi|150960345|gb|ABR82370.1| chemotaxis protein MotB [Pseudomonas aeruginosa PA7] Length = 342 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 57/336 (16%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E +S IDL + Sbjct: 61 Q--------------DPIGFSESASPYVIDLGGTPTPAPD-------------------- 86 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E I+ E+++ + E + + Sbjct: 87 --------------------KTLNPQVQAQPDSNESRISPEQDHQVNADQAESLAEQVER 126 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL L +++ + + + + + FE TR G+ I I+D N PMFD S+ P Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + E + ISI GHTDA P+ N NW LS +RA +A + L+ G E Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPET 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +IS++ G+A RL DP+N NRRIDI+V R+ Sbjct: 247 QISQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282 >gi|209963560|ref|YP_002296475.1| chemotaxis MotB protein [Rhodospirillum centenum SW] gi|7025363|gb|AAF35851.1|AF220005_2 lateral flagellar motor protein MotB [Rhodospirillum centenum] gi|209957026|gb|ACI97662.1| chemotaxis MotB protein [Rhodospirillum centenum SW] Length = 325 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 26/334 (7%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + Q +I ++ D G+WKI YADF+T +MAFF+++W++N T + + I YF Sbjct: 6 QKPQIVIKRRAQEESDELEGNGTWKIAYADFVTAMMAFFMLLWLVNVTTPEQRHGIADYF 65 Query: 70 NPFGKN-LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP + + + G Q+ + S E I V ++ Sbjct: 66 NPIAVSDANSGANGQLAGQSVAREGALTSNAASAWETIPTARVPTLSPPGPDRELDDGEG 125 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N++ + N + + L + E+S ++ E L Sbjct: 126 GGASAQENAESAPADGNGTPMTAALEQQLQQVAAEEQSFDRIEQSVRDAL---------- 175 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +S + ++ + ++FE T G+ I I D+ + MFD ++ Sbjct: 176 --------------MSAVDLADLSQNLVFERTADGLRIQITDRPHFSMFDSGATDLNGRA 221 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L + E L+ I+I GHTD PF N NW LS DRA +A +VL++ G+ Sbjct: 222 VTLLGIVAEALSGVPNRIAISGHTDGRPFAANARYGNWELSADRANAARRVLLQKGIQPG 281 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 R++++ G A + DP + NRRI I+V R Sbjct: 282 RVARVEGLADTLHLLPEDPGDPRNRRISIIVMRR 315 >gi|71906362|ref|YP_283949.1| flagellar motor protein MotB [Dechloromonas aromatica RCB] gi|71845983|gb|AAZ45479.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 316 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 63/338 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + ++ + I+IK+K + + G+WKI YADF+T +MAFFL+MW++ +T + I Sbjct: 2 SDDSTRPIVIKRKKVVAGGAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLQGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 +F QNP + S Q I + + Q K+ Sbjct: 61 FF-----------------QNPLKVSQQGGAGSGDATSILQGGGKDLTRQSGQVKRGDVE 103 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 S Q+E + K Sbjct: 104 AKKSTSFSKEAQAEFRR------------------------------------------K 121 Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++RL+ L I + K +L + T G+ I I+D++N PMFD SS+ P Sbjct: 122 EQERLESLKASIEKMIEQSPQLAQFKKQMLLDITSEGLRIQIVDEQNRPMFDSSSADLKP 181 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 T +L++IG+ L + IS+ GHTDA+ F + NW LS +RA ++ + L+ G+ Sbjct: 182 YTRDILRQIGKALNGVSNRISLAGHTDAAQFAGGEKGFSNWELSANRANASRRELVVGGM 241 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + ++ ++ G A L +DP+NS NRRI I+V +++ Sbjct: 242 DDSKVLRVVGLASTVLFDKNDPLNSVNRRISIVVLNQK 279 >gi|323139665|ref|ZP_08074707.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] gi|322395097|gb|EFX97656.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] Length = 351 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 13/342 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N III+KK D ++ G WK+ +ADFMT +MAFFLVMW+IN+T +TK I QYF Sbjct: 5 HNGSPIIIRKKRGDGDEDHHGGVWKLAFADFMTAMMAFFLVMWLINSTSKETKAVIVQYF 64 Query: 70 NPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP + A KG+ D + + S K D ++ + K + Sbjct: 65 NPVQLIDSNPAHKGMRDPKQTGQGKSLQKADDVKTTQEAESKDKDSALHKDPIKTLDEIA 124 Query: 129 NNIFYLSNSQQSEHCK-----------NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 + + +E + + + + + KS E + + P Sbjct: 125 KREPPPTTADGAESSPKVGAMTPRDPFDRVAKSASPPQGAAKSAQEENKVESPKKDSHAP 184 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPM 236 K K L ++ ++ + + G+LI++ D N M Sbjct: 185 SVTPAEQGEKAKASAAALQAELEKIVNQEARGAHAAPKTEVKQADEGVLITLTDDANFSM 244 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ S P P+ + ++ +IG+VLA T I +RGHTD + + + DNWRLS DRA Sbjct: 245 FEVGSIEPKPQLVRIIGQIGKVLAKKTGEIEVRGHTDGRSYTSKSYDNWRLSSDRATVVN 304 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +L++ G+ R+ KI G A LK DP+ NRRI+IL+ Sbjct: 305 YMLIRGGLPPARVGKIVGMADRHLKTPKDPLAPVNRRIEILL 346 >gi|146284108|ref|YP_001174261.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] gi|145572313|gb|ABP81419.1| chemotaxis protein MotB [Pseudomonas stutzeri A1501] Length = 336 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 136/335 (40%), Gaps = 65/335 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N Q II+K+ + ++ G+WKI +ADF T +MAFFLVMW++++ + KK I YF Sbjct: 2 DNTQPIIVKRVKKVA-GGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKLISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E +S + IDL + + Sbjct: 61 Q--------------DPIGFTESASPHVIDLGGTPTPSPDRTLN---------------- 90 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + E ++ D+++ + + + E+ + Sbjct: 91 --------PELEPAQSEAQIDAQQAETFAEQIERERLELLLQELQ--------------- 127 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + +LFE T+ G+ I I+D N PMF S+ P Sbjct: 128 ----------NKVDENPELQKFKDQILFEITQDGLRIQIMDAENRPMFALGSAQLQPYFE 177 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E +A ISI GHTDA PF NW LS RA +A + L+ G E++ Sbjct: 178 DILLALVETIAAVPNKISISGHTDAKPFSGRGDFGNWELSASRANAARRTLVYGGYPEEQ 237 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 I+++ G+A L DP N NRRIDILV ++ Sbjct: 238 IARVVGYASSALFDRKDPFNPVNRRIDILVLTKKA 272 >gi|319405416|emb|CBI79035.1| putative flagellar motor protein MotB [Bartonella sp. AR 15-3] Length = 384 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 106/364 (29%), Positives = 175/364 (48%), Gaps = 37/364 (10%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 D Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD+ K+ Sbjct: 2 KSDDQQSSSEIIIVRRGRHDDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKE 61 Query: 64 AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 AI YFNP + T+++GI +QN E+ ++ +D ++ D + N + Sbjct: 62 AIANYFNPIKLVDPQTSNRGI--QQNDIEQDKKSSLDQ-------EHRDDAQSEKLNTTE 112 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN-----KEENYFLPP 177 + + + N L QSE+ + K DL + N + + F P Sbjct: 113 EAELMLNPYPGLEKIVQSEYSAQNSAEQQFKQGDLVGQGAGDTQENLQLGTEHHDPFSPY 172 Query: 178 LSKEKILAMKRKKRLQD-------------------LAKKISSTLSGLVADNIVKGVLFE 218 KE I + +++K + LAK ++ + +D + V + Sbjct: 173 YWKENIDSSQKRKNQKQKTLVKETTQENNFSENSRALAKDLTDLIEETNSDIL---VHVK 229 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 + G++I ++DQ MF S+P TI ++ + ++A I I GHTDA P+R Sbjct: 230 PIKEGVMIELMDQPKYEMFKVGLSVPTARTIDLIASMAGIIAKHQGDIVISGHTDARPYR 289 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + DNW+LS RA AY +L++ G+ E RI ++ G+A LK DP + NRRI I + Sbjct: 290 STVYDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFI 349 Query: 339 EDRQ 342 D + Sbjct: 350 RDPK 353 >gi|121596103|ref|YP_987999.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42] gi|120608183|gb|ABM43923.1| OmpA/MotB domain protein [Acidovorax sp. JS42] Length = 313 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 136/338 (40%), Gaps = 62/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q IIIK+ P+ G+WKI YADFMT +MAFFL+MW++ +T + I Y Sbjct: 3 EKKLQPIIIKRAKKRPHAPH-GGAWKIAYADFMTAMMAFFLLMWLLGSTAKGELQGIAAY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+ K M G + + I DL ++ Sbjct: 62 FSSPLKVAMQGGDGAGNSSSV----------------IPGGGNDLSKVHGQVRRSNSDSP 105 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N+ + ++E + R Sbjct: 106 TNMRSSVEASRAERARQDAQR--------------------------------------- 126 Query: 189 KKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ L KI + ++ N + + + T G+ I I+D +N PMFD S++ P Sbjct: 127 ---IKALQTKIEAMITESPRLNEYRSQIRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPY 183 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L +IG L IS+ GHTDA P+ N NW LS DRA ++ + L+ +G+ Sbjct: 184 MRDILHQIGAALGGVENRISLSGHTDAVPYGNGDRGYSNWELSADRANASRRELVAAGMP 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + ++ ++ G A L +P + NRRI I V + Sbjct: 244 DAKLGRVVGMAASDLLEPQNPRAAVNRRITITVLTHEA 281 >gi|121602153|ref|YP_989388.1| putative flagellar motor protein MotB [Bartonella bacilliformis KC583] gi|120614330|gb|ABM44931.1| putative flagellar motor protein MotB [Bartonella bacilliformis KC583] Length = 357 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 171/358 (47%), Gaps = 21/358 (5%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 + + + II+++ D ++ G WKI YADFMT +MA FLVMW++NA D++ K Sbjct: 2 KSEDQHTHSEIIIVRRGGHDDHDDHHGGVWKIAYADFMTAMMALFLVMWLVNAKDEEEKA 61 Query: 64 AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ-- 120 I YFNP + T +G+ +QN E ++ +D + E + L + + Sbjct: 62 VIANYFNPIKLVDHETTIRGV--KQNDAEDNNTPSVDPTRREEAQSENGQLNLTEEAELM 119 Query: 121 -KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL--------------EK 165 + + QS+ + T ++ D +++ + + Sbjct: 120 RDPYTGLEKIVDAKRTMQDQSDKNAENSTSMEQENGDSRENSKVGIDYYDPFSLNYWKQA 179 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + + P ++ + D AK+++ + V D+ V V E + G++ Sbjct: 180 ASDALVKAETPLAFQKLAQENFPSQESIDFAKELTEFMKETVNDHHVS-VYVEPIKEGVI 238 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 I ++DQ MF SS+P ET+ V+ ++ +++A + I GHTD+ P+R+ RDNW Sbjct: 239 IELMDQPQREMFRVGSSLPTAETVEVIGEMAKIIAKHQGDVIISGHTDSRPYRSANRDNW 298 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +LS RA AY +L++ G+ E RI ++ G+A LK +DP + NRRI I + + G Sbjct: 299 QLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKADPYAAENRRISIFIRNPNG 356 >gi|319406989|emb|CBI80626.1| putative flagellar motor protein MotB [Bartonella sp. 1-1C] Length = 384 Score = 242 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 102/365 (27%), Positives = 179/365 (49%), Gaps = 37/365 (10%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 + Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD+ K+ Sbjct: 2 KSEDQQSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDEAKE 61 Query: 64 AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 AI YFNP + T+++GI + E+ ++ +D + D + +N + Sbjct: 62 AIANYFNPIKLVDPQTSNRGIQHKD--IEQDKKSSLDQ-------ERRDDDQSEKSNPME 112 Query: 123 QYQRLENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKS-TDLEKSIN---KEENYFLPP 177 + + + N L QSEH KN + EKG L + D ++++ + + F P Sbjct: 113 EAELMHNPYLGLEKIVQSEHHAKNPSEQQFEKGDLLGQGVGDSQENLQLGIEYHDPFSPD 172 Query: 178 LSKEKILAMKRKKRLQD-------------------LAKKISSTLSGLVADNIVKGVLFE 218 +E I + +++K + LAK+++ + +D + + Sbjct: 173 YWRENIDSFQKRKDQKQKTLVKESIQENNSSENSRVLAKELTDLIEAKNSDILA---HVK 229 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 + G++I ++DQ MF S+P T+ ++ + ++A + I GHTDA P+R Sbjct: 230 PIKEGVMIELMDQPKYEMFKVGLSVPTARTVDLISSMAGIIAKYQGDVVISGHTDARPYR 289 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + DNW+LS RA AY +L++ G E RI ++ G+A LK +P + NRRI I + Sbjct: 290 STVYDNWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKNPYAAENRRISIFI 349 Query: 339 EDRQG 343 D + Sbjct: 350 RDPKA 354 >gi|313500883|gb|ADR62249.1| MotB [Pseudomonas putida BIRD-1] Length = 346 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D PE + I+ + Sbjct: 61 QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 T +++ +E + E L L +E ++ Sbjct: 95 ------------------TEPTQQSPTQLSKDQVETMAEQVERERLELLLQELQNKVEEN 136 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T+ G+ I I+D N PMFD S+ P Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L DP N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275 >gi|261855636|ref|YP_003262919.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261836105|gb|ACX95872.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 358 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 144/332 (43%), Gaps = 56/332 (16%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + IIIKK + G+WKI YADF+T +MAFFL+MW++ + + K I YF Sbjct: 6 DQSKPIIIKKVSKGHGGHH-GGAWKIAYADFVTAMMAFFLLMWLLGSVGEVKLKGIADYF 64 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N K + P + + E +T+ ++ GS K Sbjct: 65 NNPVKVTLEGG---------PSAGMSVSLIDAGGEDLTRKEGQVRNGSEPPAK------- 108 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + K + + K Sbjct: 109 --------------------------------------IETDQKKMTEEEARKKIEEEDK 130 Query: 190 KRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KR+++L K++ S ++ A K + + TR G+ I IIDQ N PMF SSS P Sbjct: 131 KRIENLKKELESLINVDPALKAYKDQIKLDMTRDGLRIQIIDQANRPMFKISSSRLEPYA 190 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+K+ V+ +SI GHTD+ P+ + R NW LS DRA +A + L++ G E + Sbjct: 191 AEILKKLAPVINKLPNRLSITGHTDSLPYNGVDRTNWELSADRANAARRELVQDGYDESK 250 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + ++ G A I SDP + NRRI I+V + Sbjct: 251 LLRVVGMAAALPFIPSDPADPRNRRISIIVMN 282 >gi|296391793|ref|ZP_06881268.1| flagellar motor protein MotB [Pseudomonas aeruginosa PAb1] Length = 347 Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 57/336 (16%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E +S IDL + Sbjct: 61 Q--------------DPIGFSESASPYVIDLGGTPTPAPD-------------------- 86 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E I+ E+++ + E + + Sbjct: 87 --------------------KTLNPQVQAQPDSNESRISPEQDHQVNADQAENLAEQVER 126 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL L +++ + + + + + FE TR G+ I I+D N PMFD S+ P Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + E + ISI GHTDA P+ N NW LS +RA +A + L+ G E Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYAGNGDFGNWELSANRANAARRALVAGGYPEG 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +I+++ G+A RL DP+N NRRIDI+V R+ Sbjct: 247 QIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKA 282 >gi|148549982|ref|YP_001270084.1| flagellar motor protein MotB [Pseudomonas putida F1] gi|148514040|gb|ABQ80900.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 346 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D PE + I+ + Sbjct: 61 QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 T +++ +E + E L L +E ++ Sbjct: 95 ------------------TEPTQQSPTQLNKDQVETMAEQVERERLELLLQELQNKVEEN 136 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T+ G+ I I+D N PMFD S+ P Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L DP N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275 >gi|114330218|ref|YP_746440.1| flagellar motor protein MotB [Nitrosomonas eutropha C91] gi|114307232|gb|ABI58475.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91] Length = 314 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 137/321 (42%), Gaps = 62/321 (19%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 ++ G+WKI YADF+T +MAFFL+MW++ +T K+ I +YF K + G D Sbjct: 20 GQHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGISEYFKMPLKVALLGGDGSGD 79 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + +K G + ++ ++ + F Sbjct: 80 STSV-----------------------IKGGGDDLSRRIGQMRRSDFDDLKQSLDMDALQ 116 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-S 204 +L E+ ++L+ L +I + S Sbjct: 117 TLQDRVER------------------------------------EQLEKLKARIEDAINS 140 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 V + +L + T G+ I I+D++N PMF + P T ++L +IG++L Sbjct: 141 NPVLNKFKSQLLLDITSEGLRIQIVDEKNRPMFAIGKAELQPYTKMILHEIGKMLNDVGN 200 Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 IS+ GHTDA+P+ + NW LS DRA ++ + L+ G++ +++ ++ G + + Sbjct: 201 KISLSGHTDATPYPSGEKSYSNWELSADRANASRRELIAGGMNPEKMLRVVGLSSAVMFD 260 Query: 323 ASDPMNSANRRIDILVEDRQG 343 D + NRRI I+V +++ Sbjct: 261 KEDSFSPFNRRISIIVMNKKA 281 >gi|222112258|ref|YP_002554522.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY] gi|221731702|gb|ACM34522.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY] Length = 313 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 134/338 (39%), Gaps = 62/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q IIIK+ P+ G+WKI YADF+T +MAFFL+MW++ +T + I Y Sbjct: 3 EKKLQPIIIKRAKKRPHAPH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+ K M G + + I DL ++ Sbjct: 62 FSSPLKVAMQGGDGAGNSSSV----------------IPGGGNDLSKVHGQVRRSNSDSS 105 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N+ + ++E + Sbjct: 106 TNMRSSVEASRAERARQDAQ---------------------------------------- 125 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R++ L KI + + + + + T G+ I I+D +N PMFD S++ P Sbjct: 126 --RIKALQTKIEAMITENPRLNEYRSQIRLDLTPDGLQIQIVDDQNRPMFDSGSALVKPY 183 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L +IG L IS+ GHTDA P+ N NW LS DRA ++ + L+ +G+ Sbjct: 184 MRDILHQIGAALGGVENRISLSGHTDAVPYGNGDRGYSNWELSADRANASRRELVAAGMP 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + ++ ++ G A L +P + NRRI I V + Sbjct: 244 DAKLGRVVGMAASDLLEPQNPRAAVNRRITITVLTHEA 281 >gi|26991582|ref|NP_747007.1| flagellar motor protein MotB [Pseudomonas putida KT2440] gi|24986670|gb|AAN70471.1|AE016688_10 motility protein, MotB family [Pseudomonas putida KT2440] Length = 346 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 139/335 (41%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D PE + I+ + Sbjct: 61 QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 T +++ +E + E L L +E ++ Sbjct: 95 ------------------TEPTQQSPTQLSKDQVETMAEQVERERLELLLQELQNKVEEN 136 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T+ G+ I I+D N PMFD S+ P Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + +SI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 181 DILLAMADTIKAVPNKVSISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L DP N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275 >gi|296447981|ref|ZP_06889887.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] gi|296254491|gb|EFH01612.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] Length = 381 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 110/379 (29%), Positives = 168/379 (44%), Gaps = 45/379 (11%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I I+K + ++ G+WKI +ADFMT +MAFFLVMWIIN+T +TK AI Q Sbjct: 3 EEKEAEIIFIRKNHGDHEEGHHGGAWKIAFADFMTAMMAFFLVMWIINSTSKETKAAIVQ 62 Query: 68 YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI-------------------- 106 YFNP + A KG+ D ++ + S+ + EH Sbjct: 63 YFNPVQLVDSNPAHKGLRDPKDGGQGKSEKPTAATQKEHSGAAPESDKDAPQREAALLFD 122 Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 ++D G N K+ IF + E G S Sbjct: 123 PITTLDEIAGPGNTKEGQTEQAPPIFGDPFDRSGRGVGYVEPHVEESGSPDKASETERAE 182 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS--------------------STLSGL 206 + PP S + + +R+ A + + ++ Sbjct: 183 ERAKPASSTPPTSAKTMTRQQRQAAATAAADEKAKAEEKAKAEAAQLAATRAAVDRIAKA 242 Query: 207 VADNIVKGVLFETTR--TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + N G E T G+LIS+ D N MF S P P+ + ++ +I VLA Sbjct: 243 ESANAQPGPHVEVTETAEGLLISLTDDANFSMFAIGSVKPKPQLVRIVGQIAGVLAKQPG 302 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + +RGHTDA +++ DNWRLS DRA AY +L++ G++E R+ KI+G+A LK Sbjct: 303 EVELRGHTDARSYKSKVYDNWRLSADRANMAYYMLLRGGLAEKRVVKIAGYADRNLKAQK 362 Query: 325 DPMNSANRRIDILVEDRQG 343 +P+ + NRRI+ILV R+G Sbjct: 363 EPLAAVNRRIEILV--RKG 379 >gi|319898651|ref|YP_004158744.1| flagellar motor protein MotB [Bartonella clarridgeiae 73] gi|319402615|emb|CBI76160.1| putative flagellar motor protein MotB [Bartonella clarridgeiae 73] Length = 384 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 104/361 (28%), Positives = 174/361 (48%), Gaps = 31/361 (8%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 D Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD TK+ Sbjct: 2 KSDDQQSSSEIIIVRRGGHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDATKE 61 Query: 64 AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 AI YFNP + T+++GI + N E+ ++ +D + D + +N + Sbjct: 62 AIANYFNPIKLVDPQTSNRGI--QHNDIEQDKKSSLDQECKD-------DAQSEKSNAME 112 Query: 123 QYQRLENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKST-DLEKSINKEENYFLP--PL 178 + + + + L QSE +N + E+G + + D +K++ Y P P Sbjct: 113 EAELMRDPYLGLKKIVQSERNAQNPAEQQFEQGNLVGQGAGDSQKNLQLGTEYHDPFSPY 172 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR----------------- 221 + +A +K+++Q + + +L E T Sbjct: 173 YWSENVASSQKRKIQKQKMMAKESEQENNSSENSHALLKELTDLIEGETNNILAHVKPIK 232 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G++I ++DQ MF SIP +TI ++ + ++A + I GHTDA P+R+ Sbjct: 233 EGVMIELMDQPKYEMFKVGLSIPTAQTIDLISSMAGIIAKHQGDVVISGHTDARPYRSNV 292 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 DNW+LS RA AY +L++ G+ E RI ++ G+A LK DP + NRRI I + D Sbjct: 293 YDNWQLSTARAQMAYYMLVRGGLDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRDP 352 Query: 342 Q 342 + Sbjct: 353 K 353 >gi|30248076|ref|NP_840146.1| flagellar motor protein MotB [Nitrosomonas europaea ATCC 19718] gi|30179961|emb|CAD83956.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718] Length = 307 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 62/321 (19%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 ++ G+WKI YADF+T +MAFFL+MW++ +T K+ I +YF K + G D Sbjct: 20 GQHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTQGDKEGIAEYFKTPLKVALLGGDGSGD 79 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + +K G + K+ +++ + F Sbjct: 80 STSV-----------------------VKGGGDDISKKIGQMKRSDF------------- 103 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 DL +S D++ ++ + L +L+ L +I T++ Sbjct: 104 ---------DDLKRSIDMDALQALQDRFELE--------------QLEKLKARIEDTINS 140 Query: 206 LVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 A N K +L + T G+ I I+D++N PMF + T ++L +IG++L Sbjct: 141 NPALNKFKSQLLLDITSEGLRIQIVDEKNRPMFSMGRAELQSYTKMILHEIGKMLNDVGN 200 Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 IS+ GHTDA+P+ NW LS DRA ++ + L+ G+S +++ ++ G + + Sbjct: 201 KISLSGHTDATPYPTGEKSYSNWELSADRANASRRELIAGGMSPEKMLRVVGLSSAVMFD 260 Query: 323 ASDPMNSANRRIDILVEDRQG 343 +DP + NRRI I+V +++ Sbjct: 261 KADPFSPFNRRISIIVMNKKA 281 >gi|332527142|ref|ZP_08403219.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111570|gb|EGJ11552.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 322 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 148/340 (43%), Gaps = 64/340 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + +K Sbjct: 4 DAKKLQPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDRK---- 58 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 GI D P + + N Sbjct: 59 --------------GIADYFTSPLKVALNSG----------------------------- 75 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ G+DL ++T K + E L K ++ Sbjct: 76 ------------GSGAGDASHVLKGGGQDLTRTTGQVKRGDIEAPRATVNLQALKQEQVR 123 Query: 188 RK-KRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + RLQDL ++I ++ + ++ + + TR G+ I I+D++N PMF S++ Sbjct: 124 AEIVRLQDLKRRIEEKIAANKRLSAMRSQLRLDMTRDGLRIQIVDEQNRPMFASGSAVVQ 183 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303 P +LQ+IG VLA +++ GHTDA + NW LS DRA ++ +VL + G Sbjct: 184 PYMRELLQEIGSVLAEVPNRLTLEGHTDAMAYAGGERGYSNWELSSDRANASRRVLAEGG 243 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + EDR+ ++ G A + DP+ NRRI I+V +R+ Sbjct: 244 LPEDRMLRVQGLASSQPFDRQDPLAPTNRRISIIVMNREA 283 >gi|319764525|ref|YP_004128462.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|317119086|gb|ADV01575.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] Length = 312 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 63/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + I Y Sbjct: 3 EKKLQPIIIKRIKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K M G + + + + Q ++ Sbjct: 62 FASPLKVAMQGGDGAGNSSS-----------------VIPGGGNDLSKVHGQVRRSDSES 104 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N ++ ++E + R Sbjct: 105 NTSTRSIDTVRAERARLDAQR--------------------------------------- 125 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ L KI + + + + + T G+ I I+D +N PMFD S++ P Sbjct: 126 ---IKALQSKIDAMITENPRLNEYRSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPY 182 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG L IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ Sbjct: 183 MRDILREIGAALGSVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMP 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + R+ ++ G A L +P NRRI I V + Sbjct: 243 DARLGRVVGLAASDLLEPDNPRAPVNRRITITVLTHEA 280 >gi|330826741|ref|YP_004390044.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|329312113|gb|AEB86528.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 311 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 63/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + I Y Sbjct: 3 EKKLQPIIIKRIKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K M G + + + + Q ++ Sbjct: 62 FASPLKVAMQGGDGAGNSSS-----------------VIPGGGNDLSKVHGQVRRSDSES 104 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N ++ ++E + R Sbjct: 105 NTSTRSIDTVRAERARLDAQR--------------------------------------- 125 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ L KI + + + + + T G+ I I+D +N PMFD S++ P Sbjct: 126 ---IKALQSKIDAMITENPRLNEYRSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPY 182 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG L IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ Sbjct: 183 MRDILREIGAALGSVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMP 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + R+ ++ G A L +P NRRI I V + Sbjct: 243 DARLGRVVGLAASDLLEPDNPRAPVNRRITITVLTHEA 280 >gi|171057687|ref|YP_001790036.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170775132|gb|ACB33271.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 320 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 137/338 (40%), Gaps = 63/338 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + Q IIIK+ + + G+WKI YADF+T +MAFFL+MW++ +T + K Sbjct: 4 DAKKLQPIIIKRVKKGGHSAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDK----- 57 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 KGI D P + + + Sbjct: 58 -------------KGIQDFFQSPLKVAMSG------------------------------ 74 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ + G DL +++ K + + Sbjct: 75 ------------GAGAGDATSVIKGGGTDLSQTSGQVKRGEVPSKKTYNAEAIKTSQRKA 122 Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++RL+ L +++ ++ + + TR G+ I I+D++N PMFD +S P Sbjct: 123 EQERLETLRQRVQDVMANSPKLAEFKNQIRLDMTRDGLRIQIVDEQNRPMFDSGASEVKP 182 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L+ IG VL +++ GHTDA P NW LS DRA ++ + L+ G+ Sbjct: 183 YMREILRAIGSVLTEVPNRLTLEGHTDAKPMGSGAGYSNWELSSDRANASRRELLAGGLD 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + R+ ++ G A DP+N NRRI I+V R+ Sbjct: 243 DARVLRVQGLAASVPFDQQDPLNPINRRISIIVMTREA 280 >gi|330901956|gb|EGH33293.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 302 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D + S IDL ++ N Sbjct: 61 K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQT------------------ 88 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 L+ Q+ +++ ++E + ++ + E + + Sbjct: 89 ----LNPEVQTTPSPDTVPIEAENAETKAEAVEQE----------------------RLE 122 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ+L K+ +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 123 MLLQELQTKVEE---NPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + +SI GHTDA+PF + NW LS +RA +A + L+ + + Sbjct: 180 DILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +P N NRRIDI+V ++ Sbjct: 240 VARVVGYASSALYDRQNPTNPINRRIDIVVLTKKA 274 >gi|23013133|ref|ZP_00053071.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 344 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 139/334 (41%), Gaps = 20/334 (5%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E Q IIIK+ + + G+WK+ YADF+T +MAFFL++W++NA ++ + YF Sbjct: 3 EGGQQIIIKRVKKVAGGAH-GGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSNYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + ++ G +Q S + G + + + Sbjct: 62 APTMASKSSSGAGGLLGGKVIGEGAQTSNTSSPSLVQHLPPASIGPGGEDLTGSKEFESD 121 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N SN + + +GKD ++ E ++ A + + Sbjct: 122 NPSE-SNQGPGQGAGQGAGQGPGQGKDRSGMSEQE---------------FKEAQAQREQ 165 Query: 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ + + + G+ +L + T G+ I I DQ MF SS P T Sbjct: 166 QKFDKAKEVLEGAMKGIPEMKQFQGSMLVDNTPEGLRIQITDQEGLAMFPSGSSAPFGHT 225 Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L + V+ I+I GHTDA PFR+ NW LS DRA + + L+ SGV E Sbjct: 226 RAMLDLVSRVVRQLPDNRIAISGHTDAVPFRDPSGYTNWELSADRALATRRALIASGVPE 285 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 RI +I G A +DP NRRI I++ Sbjct: 286 GRIDRIVGRADQEPLDKADPKGLRNRRISIILLR 319 >gi|150395498|ref|YP_001325965.1| flagellar motor protein MotB [Sinorhizobium medicae WSM419] gi|150027013|gb|ABR59130.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 397 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 185/400 (46%), Gaps = 60/400 (15%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ N +N+ III ++ A ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MSDESHHNGKNE--IIIVRRSAGSHEGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK AI YFNP ++ + + + + +D TK+ K G Sbjct: 59 TKAAIAAYFNPVQLTDQKPAEKGLKDPAKDAQGEKTQQRSKVDGDQTKSGGSAKSGDQLT 118 Query: 121 KKQYQRL------------------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 + E NI + +E ++ E +D Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAREVGHEANISVKGDGGAAESGPSTGAAGGEAYRD 178 Query: 157 L------------------CKSTDLEKSINKEENYFLPPLSKEKIL-------------- 184 +S + E F+P + K L Sbjct: 179 PFDPDFWTKQVEVKDAGNTVESDVAIAANAAAEEKFVPEETSAKALQNQANAEDRTENEA 238 Query: 185 -AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 A R++ + L +I L G A +++G++ G+L++I +Q + PMF S++ Sbjct: 239 AAEDRQQEAEALKAEIERELGGE-AGRLLEGLVVAPAEGGLLVTISEQTDAPMFAVGSAV 297 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P E ++ ++KIG +LA +++RGHTD PF++ DNWRLS RA SAY +L++ G Sbjct: 298 PQKELVLAMEKIGRLLAQRPGAVAVRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGG 357 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + E+R+ +ISGFA RL++ +DP ANRRI+IL++ QG Sbjct: 358 LKEERVKQISGFADRRLQVPNDPYAPANRRIEILLQSGQG 397 >gi|325981670|ref|YP_004294072.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531189|gb|ADZ25910.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 312 Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 64/336 (19%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + + I+IK+ + ++ G+WKI YADF+T +MAFFL+MW++ ++ + Sbjct: 6 SQRPIVIKRIKKVA-GGHHGGAWKIAYADFVTAMMAFFLLMWLLGSSTQSQLE------- 57 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 GI + P KI I +++ +K G T+ +Q+ +++N Sbjct: 58 -----------GISEYFKTPL-----KIAFMGGSSIGESNSLIKGGGTDLTRQHGQVKNG 101 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 ++ + K R + Sbjct: 102 EIITNDKANKQAIKVIKERI-------------------------------------ELE 124 Query: 191 RLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L+ L KKI + + +L + T G+ I I+D++N PMF + P T Sbjct: 125 KLEGLKKKIEEAIQANPQLQRFANQLLLDITTDGLRIQIVDEQNRPMFALGRAELQPYTR 184 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L++IG++L T IS+ GHTDA PF + NW LS DRA ++ + L+ G+ + Sbjct: 185 TILREIGKMLNEVTNKISLSGHTDAKPFPSGDKGYSNWELSADRANASRRELIVGGMDAN 244 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G + L DP+N NRRI I+V + + Sbjct: 245 KMLQVVGLSSAVLFDKDDPLNPINRRISIVVMNEKA 280 >gi|325271245|ref|ZP_08137790.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51] gi|324103648|gb|EGC00950.1| flagellar motor protein MotB [Pseudomonas sp. TJI-51] Length = 340 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D PE + I+ + Sbjct: 61 QDPIGFSESGTPYVIDLGGSPEMAPDKTINPEVK-------------------------- 94 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 T ++ +E + E L L +E ++ Sbjct: 95 ------------------TEPTQPSPTQLDKDQVETMAEQVERERLELLLQELQNKVEEN 136 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T+ G+ I I+D N PMFD S+ P Sbjct: 137 PQLQKFKDQI----------------LFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEFGNWELSANRANAARRALVAGGYPDGQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +P N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRKNPFNPVNRRIDIIVLTKKA 275 >gi|157373190|ref|YP_001471790.1| OmpA/MotB [Shewanella sediminis HAW-EB3] gi|157315564|gb|ABV34662.1| OmpA/MotB [Shewanella sediminis HAW-EB3] Length = 336 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 139/330 (42%), Gaps = 44/330 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ++ +IIK++ + + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 4 KNEPLIIKRRKRQKRSATHGGAWKVAFADFTLAMMALFMVLWILQIADQQERTMIVQYLN 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 G + S FD P + IDL + + + Sbjct: 64 --GDMFASGSINPFDLSQSP-----SMIDLQGSIALQQAIIPATGTGV------------ 104 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 E ++ G+D K E N +P + + Sbjct: 105 ----------EKAGPAIHNHIPVGEDNAK-----AGRGPELNSLVPG-------KFETQA 142 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ LA+++ S ++ + N+ V + G+ I I D + MF + SS P Sbjct: 143 QLEFLAREVDSVITEV---NLSANVEIKVVPQGVRILIHDNVHQFMFTRGSSNMKPYFED 199 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L +G +L ISI GHTD++P+ NW LS RA A +VL GV +I Sbjct: 200 LLMALGPLLGGVENKISISGHTDSTPYAGKTFTNWELSSKRALLARRVLEYGGVKRHQII 259 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A I +DP +ANRRI++LV Sbjct: 260 QVTGMADQSPYIQNDPAAAANRRIEMLVLT 289 >gi|124268058|ref|YP_001022062.1| chemotaxis signal transduction protein CheY [Methylibium petroleiphilum PM1] gi|124260833|gb|ABM95827.1| Chemotaxis signal transduction protein CheY [Methylibium petroleiphilum PM1] Length = 320 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 145/339 (42%), Gaps = 60/339 (17%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + Q II+KK + G+WKI YADF+T +MAFFL+MW++ +T + +K I+ Sbjct: 4 DAKKLQPIIVKKIKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDRKGIQD 62 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN NP + S + K ST Q K+ Sbjct: 63 YFN-----------------NPIKVSMMGGSGSGDSSSVVKGGGQDLTRSTGQVKRGDVE 105 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 Y + ++ + A Sbjct: 106 AERKSYTLQALKATRAQQ---------------------------------------ASA 126 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + L+ L ++ S L+ N +K + F+ T G+ I I+D++N PMF S++ P Sbjct: 127 EAESLKMLKGRVESKLANDPRFNELKAQIRFDMTADGLRIQIVDEQNRPMFATGSAVVQP 186 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L+ IG VLA +++ GHTD + F A NW LS DRA ++ + L+ G+ Sbjct: 187 YMRELLRTIGGVLAEVPNKLTLEGHTDTAAFSAGAGGYSNWELSADRANASRRELIAGGL 246 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ ++ G A L P+N NRRI I+V +R+ Sbjct: 247 ADEKVLRVQGLAASSLFDREQPLNPVNRRISIIVMNREA 285 >gi|323492326|ref|ZP_08097479.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546] gi|323313373|gb|EGA66484.1| chemotaxis LafU protein [Vibrio brasiliensis LMG 20546] Length = 330 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 133/336 (39%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ D P++ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QRQEQVVFKRSKKHDHEPHHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLASDSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H NS G E + +P Sbjct: 93 --------PSRHDSTHTVNSFFDGDGDGP--------------ETDSLIPG-------TF 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++RL LAK I + A V T G+ + + D MF + + P Sbjct: 124 DTQERLAALAKVIEEAVRQSSAQG---NVNVTVTPQGLRVVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V I I GHTD++ F R NW LS RA A L+ G+ Sbjct: 181 FFEDLLLALAPVFKRVVNPIIISGHTDSTQFKHRFKQASNWELSASRANVARVTLVSGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++R+ +++G + L DP +S NRRI++ V Sbjct: 241 PDERVLQVTGMSDRALLNNDDPESSENRRIELFVLT 276 >gi|283133065|dbj|BAI63831.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci] Length = 341 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTPNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|319403973|emb|CBI77561.1| putative flagellar motor protein MotB [Bartonella rochalimae ATCC BAA-1498] Length = 384 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 99/361 (27%), Positives = 169/361 (46%), Gaps = 31/361 (8%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 + Q + + II+++ D ++ G WKI YADFMT +MA FLV+W++N DD+TK+ Sbjct: 2 KSEDQQSSSEIIIVRRGQHGDHDDHHGGVWKIAYADFMTAMMALFLVLWLVNVQDDETKE 61 Query: 64 AIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 AI YFNP + T+++GI + E+ ++ +D + D + +N + Sbjct: 62 AIANYFNPIKLVDPQTSNRGIQHKD--IEQDKKSSLDQ-------ERRDDDQSEKSNAME 112 Query: 123 QYQRLENNIFYLSNSQQSEH-CKNSLTRDSEKGKDLCKSTDLEK---SINKEENYFLPPL 178 + + + N L QSEH KN + EKG + + + + E + P Sbjct: 113 EAELMHNPYPGLEKIVQSEHHAKNPSEQQFEKGDLVGQGVGDSQENLQLGTEHHDPFSPH 172 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR----------------- 221 + + +K++ Q + ++ + + + E T Sbjct: 173 YWRENIDFSQKRKDQKQKTLVKESIQENNSSENSRALAQELTDFIEGENSNILAHVKPIK 232 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G++I ++DQ MF S+P TI ++ + ++A + I GHTDA +R+ Sbjct: 233 EGVMIELMDQPKYEMFKVGLSVPTARTIDLISSMAGIIAKYQGDVVISGHTDARAYRSAV 292 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 DNW+LS RA AY +L++ G E RI ++ G+A LK DP + NRRI I + D Sbjct: 293 YDNWQLSTARAQMAYYMLVRGGFDEKRILRVEGYADRDLKNKKDPYAAENRRISIFIRDP 352 Query: 342 Q 342 + Sbjct: 353 K 353 >gi|329890064|ref|ZP_08268407.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568] gi|328845365|gb|EGF94929.1| chemotaxis protein motB [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 135/333 (40%), Gaps = 50/333 (15%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ND+ I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF Sbjct: 4 NDRPILIKKVKKVAGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFA 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + T+ G L Sbjct: 64 PANVSASTSGSG------------------------------------------GILGGT 81 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 S + + + + + D + ++ L +A + Sbjct: 82 SLGDSEGAKGAGSNAVIEQLAPEAPDAPQEAGQNSNLASASEAAL-----RAEIARREAA 136 Query: 191 RLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 A+ + + + + K ++ + T G+ I ++DQ MF+ SS P P Sbjct: 137 DFASAAESLRQAMQSMPELAELSKQLIIDQTPEGLRIQLVDQEGRSMFENGSSRPNPRAQ 196 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSED 307 ++L+ + +V+ I+I GHT A + A +W LS RA ++ L +GVS D Sbjct: 197 LLLRAVAKVINQLPNRITITGHTSAVAGSSRASSPGDWPLSSARADASRLTLQSAGVSSD 256 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ ++G A DP + NRRI I++ Sbjct: 257 RVYSVAGKAGSDPLYPDDPSLAGNRRIAIVLLR 289 >gi|253996630|ref|YP_003048694.1| flagellar motor protein MotB [Methylotenera mobilis JLW8] gi|253983309|gb|ACT48167.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8] Length = 312 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 60/331 (18%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II KK+ ++ G+WKI YADF+T +MAFFL+MW++ +T K+ I +YF Sbjct: 9 IIVKKIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKAQKEGISEYFKTPL-- 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 K+ L + + + +K G + Q + Sbjct: 67 ---------------------KVALMGGDSVGASDTLIKGGGGKDMTKKQGQVKPVDGPP 105 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 Q++ K++ + L +++L+ L Sbjct: 106 GKQKAVDIKDA----------------------------------KAALEKAEEQKLELL 131 Query: 196 AKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +KI ++ K +L + T G+ I I+D++N PMF+ + + P +L++ Sbjct: 132 KEKIEKSIEDSPTLSKFKKQLLIDITTEGLRIQIVDEQNRPMFESAKAEMQPYAKQILKE 191 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG++L T IS+ GHTDA+P+ + NW LS DRA ++ + L+ G+ E ++ ++ Sbjct: 192 IGQMLNGVTNKISLSGHTDAAPYSSGEKGYSNWELSSDRANASRRELIAGGMDEAKLLRV 251 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G + L DP+N NRRI I+V ++Q Sbjct: 252 VGLSSVSLFDKDDPLNPINRRISIIVMNKQA 282 >gi|237798269|ref|ZP_04586730.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021121|gb|EGI01178.1| flagellar motor protein MotB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 346 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D + S IDL ++ N Sbjct: 61 K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQT------------------ 88 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 L+ Q+ +++ ++E + ++ + E + + Sbjct: 89 ----LNPEVQTTPSPDTVPIEAETSETKAEAVEQE----------------------RLE 122 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ+L K+ +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 123 MLLQELQNKVEE---NPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + +SI GHTDA+PF + NW LS +RA +A + L+ + + Sbjct: 180 DILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDAQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +P N NRRIDI+V ++ Sbjct: 240 VARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|89902463|ref|YP_524934.1| OmpA/MotB [Rhodoferax ferrireducens T118] gi|89347200|gb|ABD71403.1| OmpA/MotB [Rhodoferax ferrireducens T118] Length = 314 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 145/339 (42%), Gaps = 62/339 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + Q II+KK + G+WKI YADF+T +MAFFL+MW++ +T + KK Sbjct: 4 DGKKLQPIIVKKIKKGGHVVH-GGAWKIAYADFVTAMMAFFLLMWLLGSTSEGDKK---- 58 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G+ D + P + S Q Sbjct: 59 --------------GLSDYFSAPLKVSM---------------------------QGGSG 77 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + ++ + S G D + ++ E +A + Sbjct: 78 AGGSNTILPGGGADLTQKSGQNRRGDGSDPMQKRMAANAVKAE-------------VAKQ 124 Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K+L ++ KIS+ +SG + + ETT G+ I I+D + PMFD S++ P Sbjct: 125 DAKKLAGISAKISALISGNTKLTEFSRQIRLETTADGLQIQIVDDQKRPMFDSGSAVVKP 184 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG L IS+ GHTD+SP+ + NW LS DRA ++ + L+ +G+ Sbjct: 185 YMRDILREIGGALNGVENKISLDGHTDSSPYSSAQRGYSNWELSSDRANASRRELVAAGM 244 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +D+++++ G A L +P + NRRI I V R+ Sbjct: 245 PDDKLARVVGLASSILLDPENPTGAVNRRISITVMTREA 283 >gi|83311678|ref|YP_421942.1| flagellar motor protein [Magnetospirillum magneticum AMB-1] gi|82946519|dbj|BAE51383.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1] Length = 344 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 134/334 (40%), Gaps = 20/334 (5%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E Q IIIK+ + + G+WK+ YADF+T +MAFFL++W++NA ++ + YF Sbjct: 3 EGGQQIIIKRVKKVAGGAH-GGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSNYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + ++ G +Q S + G + + Sbjct: 62 APTMASKSSSGAGGLLGGKVIGEGAQVSNTSSPSLVQHLPPASIGPGGEDLTGSKEFAPE 121 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N S + + + ++ + ++ A + + Sbjct: 122 NEGDSSLGPGK----------------GAGQGEGQGAGQGKDRSGMSEQEFKEAQAQREQ 165 Query: 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ + + + G+ +L + T G+ I I DQ MF SS P T Sbjct: 166 QKFDKAKEVLEGAMKGIPEMKQFQGSMLVDNTPEGLRIQITDQEGLAMFPSGSSAPYGHT 225 Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L + V+ I+I GHTDA PFR+ NW LS DRA + + L+ SGV E Sbjct: 226 RAMLDLVSRVVRQLPDNRIAISGHTDAIPFRDPSGYTNWELSADRALATRRALIASGVPE 285 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 RI +I G A +DP NRRI I++ Sbjct: 286 GRIDRIVGRADQEPLDKADPKGLRNRRISIILLR 319 >gi|330960099|gb|EGH60359.1| flagellar motor protein MotB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 341 Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + AI YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF + NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIKSVPNKISISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|330984570|gb|EGH82673.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 344 Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 85/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D + S IDL ++ N T Sbjct: 61 K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|295690006|ref|YP_003593699.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431909|gb|ADG11081.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756] Length = 299 Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 144/334 (43%), Gaps = 46/334 (13%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++Q I+IKK + ++ G+WK+ YADF+T +MAFFL+MW++N T + K+ I YF Sbjct: 4 SSEQPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYF 63 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P ++ + Sbjct: 64 AP-------------------------------------------ASISSTTSGSGGILG 80 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + +S+ +++ + + + D + +S + + LA K + Sbjct: 81 GTSLGDDGAKSDGKMSAIQQMAPEVPDNVEKDG--QSTDTANLSSASEQALRDALAKKEQ 138 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 A+ + +L + + K +L + T G+ I ++DQ MF ++S +P Sbjct: 139 DSFASAAQSLRQSLQDMPELAELSKQILIDQTPEGLRIQLVDQEGRSMFQENSKVPNDRA 198 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++L+ + +V+ ++I GHT AS + +W LS RA ++ Q+L +GV +DR Sbjct: 199 RILLRAVAKVITQLPNRVTISGHTSASAYGKKQDGDWSLSASRADASRQILRAAGVDDDR 258 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 I ++SG A+ A DP + NRRI I++ + Sbjct: 259 IYQVSGKANSEPLYADDPTLAGNRRISIVLLREK 292 >gi|257482421|ref|ZP_05636462.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009754|gb|EGH89810.1| flagellar motor protein MotB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 341 Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|330886588|gb|EGH20249.1| flagellar motor protein MotB [Pseudomonas syringae pv. mori str. 301020] Length = 341 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|320321894|gb|EFW77990.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea str. B076] gi|320331001|gb|EFW86975.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea str. race 4] gi|330872240|gb|EGH06389.1| flagellar motor protein MotB [Pseudomonas syringae pv. glycinea str. race 4] Length = 341 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDYENPTNPVNRRIDIVVLTKKA 274 >gi|260222452|emb|CBA32030.1| Chemotaxis protein motB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 313 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 146/341 (42%), Gaps = 66/341 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + K Sbjct: 4 DAKKLQPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTTEGDK----- 57 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 KGI D P + + Sbjct: 58 -------------KGISDYFQSPLKVAL-------------------------------- 72 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL--A 185 Q S + + G DL +S K E +++ + A Sbjct: 73 ----------QGGAGAGASNSVITGGGNDLTQSAGQSKRGEGTEKSAKKNAGEQRKIERA 122 Query: 186 MKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 K + L LA KI+ST+S + E T G+ I I+D + PMFD SS Sbjct: 123 KKDAQTLAALAAKIASTISNNPKMAEFSSQIKLEITPDGLQIQIVDDQRRPMFDIGSSSV 182 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302 P +L++IG LA IS+ GHTD +P+ N A NW LS DRA ++ + L+ + Sbjct: 183 KPYMRDILKEIGVTLADVDNKISLDGHTDQTPYGNAARGYSNWELSADRANASRRELIAA 242 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ E++++++ G A L +P++ ANRRI ILV ++ Sbjct: 243 GMPENKLARVVGMASSLLADPQNPLSPANRRISILVMTKEA 283 >gi|298484924|ref|ZP_07003023.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160611|gb|EFI01633.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 341 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|71737470|ref|YP_272857.1| flagellar motor protein MotB [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558023|gb|AAZ37234.1| motility protein, MotA family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 341 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|289648637|ref|ZP_06479980.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str. 2250] Length = 350 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|289623746|ref|ZP_06456700.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330865884|gb|EGH00593.1| flagellar motor protein MotB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 344 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETSETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLAMADTIKSVPNKISISGHTDATPFVGNGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|66043829|ref|YP_233670.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae B728a] gi|63254536|gb|AAY35632.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|330971543|gb|EGH71609.1| flagellar motor protein MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 349 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 84/335 (25%), Positives = 144/335 (42%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQT------------------ 88 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 L+ Q+ +++ ++E + ++ + E + + Sbjct: 89 ----LNPEVQTTPSPDTVPLEAENAETKAEAVEQE----------------------RLE 122 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ+L K+ +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 123 MLLQELQTKVEE---NPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + +SI GHTDA+PF + NW LS +RA +A + L+ + + Sbjct: 180 DILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +P N NRRIDI+V ++ Sbjct: 240 VARVVGYASSALYDRQNPTNPINRRIDIVVLTKKA 274 >gi|330978961|gb|EGH78020.1| flagellar motor protein MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 346 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D + S IDL ++ N Sbjct: 61 K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQT------------------ 88 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 L+ Q+ +++ ++E + ++ + + Sbjct: 89 ----LNPEVQTTPSPDTVPIEAENAETKAEAVE--------------------------Q 118 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVQENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + +SI GHTDA+PF + NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHQNPTNPINRRIDIVVLTKKA 274 >gi|120613045|ref|YP_972723.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1] gi|120591509|gb|ABM34949.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 312 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 62/334 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 7 QPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF--- 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 +S K+ + + +S + G + K + ++ + Sbjct: 63 --------------------ASPLKVAMQGGDGSGNSSSIIPGGGNDLSKVHGQVRRSDS 102 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + S+++ + A + + R+ Sbjct: 103 DTATSRRTNIENARAEQ-----------------------------------ARQDQMRI 127 Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + L KI + +S + + T G+ I I+D +N PMFD S++ P + Sbjct: 128 KALQAKIDALISENPRLKEFKSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDI 187 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG L IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ + ++ Sbjct: 188 LREIGSALGGVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKL 247 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A L +P NRRI I + ++ Sbjct: 248 GRVVGLAASDLLEPDNPRAPVNRRITITILTKEA 281 >gi|144899852|emb|CAM76716.1| Flagellar motor protein [Magnetospirillum gryphiswaldense MSR-1] Length = 323 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 140/332 (42%), Gaps = 47/332 (14%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q IIIK+ + ++ G+WK+ YADF+T +MAFFL++W++NA ++ I YF Sbjct: 3 EGQQIIIKRVKKVA-AGHHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGISNYFA 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + + ++ + + Sbjct: 62 PSMASKSASGA--------------------------GGLLGGQVIGQGAQVSQTSSPSL 95 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +L S ++ + ++E + + + EK +A + ++ Sbjct: 96 VQHLPPSSIGPGGEDMTSENTEPMEGMSEEDFREK------------------MAEREQQ 137 Query: 191 RLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + + + L G+ +G ++ + T G+ I I DQ MF SS T Sbjct: 138 KFDKAKEVLDNALKGIPELKQFEGSMMVDNTPEGLRIQITDQEGLAMFPSGSSAMFGHTR 197 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + ++ ISI GHTDA PFR+ NW LS DRA ++ + L+ SGV E+R Sbjct: 198 ALLDLVSRIVNQMPNKISITGHTDAIPFRDPSGYTNWELSADRALASRRALLGSGVPEER 257 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 I +I G A + DP NRRI I++ Sbjct: 258 IDRIVGRASSEPLVVDDPKAPRNRRISIILLR 289 >gi|120555689|ref|YP_960040.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120325538|gb|ABM19853.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 319 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 82/333 (24%), Positives = 136/333 (40%), Gaps = 69/333 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +Q IIIK+K + ++ GSWK+ +ADF T +MAFFLV+W+ + K A+E YF Sbjct: 2 EEQPIIIKRKKKV-VGGHHGGSWKVAFADFATAMMAFFLVLWLTATATPEQKLAVEGYFK 60 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 D + S N +DL + + + + ST Q Sbjct: 61 --------------DPVGFTDGGSPNPVDLEGSASVIEEATQDQEASTIQ---------- 96 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +++ + E + L +E ++ Sbjct: 97 ---------------------------IEDEVVDELADTLEQRRMRQLFQEFQERIENSD 129 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 LQ+ ++ L + T G+ I I+D+ PMFD + Sbjct: 130 TLQEFKDQL----------------LLDITDEGLRIQIVDRSGRPMFDSGRDELKYYSQD 173 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L ++ + L ISI GHTDA+PF NW LS DRA +A + L+ GV ++I Sbjct: 174 ILFELAKKLGSVDNKISITGHTDATPFSGRPGYTNWELSADRANTARRALVAGGVRLEQI 233 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +++ G + L +P NRRI I+V +++ Sbjct: 234 ARVVGLSDSVLFDKDNPTAPVNRRISIIVLNKK 266 >gi|227820870|ref|YP_002824840.1| flagellar motor protein MotB [Sinorhizobium fredii NGR234] gi|227339869|gb|ACP24087.1| chemotaxis protein motility protein B [Sinorhizobium fredii NGR234] Length = 392 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 177/395 (44%), Gaps = 55/395 (13%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ N +N+ III K+ ++ G WKI YADFMT +MAFFLVMW+INA +++ Sbjct: 1 MSEESHHNGKNE--IIIVKRSGDGHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEE 58 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK AI YFNP ++ + + + D TK+ K G Sbjct: 59 TKAAIASYFNPVQLTDQKPAEKGLKNPAKDAQGEETQQRSKSDGEQTKSGGSAKTGDQLT 118 Query: 121 KKQYQR--------LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + EN LS + + +++ E G + + Sbjct: 119 ATSGEETKYSDADFFENPYSVLSEIAKEAGQQANISAKGEGGAAQSGPATGAEGGEAYRD 178 Query: 173 YFLPPLSKEKILAMKRKKRLQ--------------------------------------- 193 F P +++ + Sbjct: 179 PFDPDFWTKQVEVKDAGNATEGDVADADAGNNPAAGEALKTAEARKGEVPLEQEAEAQQQ 238 Query: 194 -----DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L +I + G A +++G++ + G+L++I +Q + PMF S++P + Sbjct: 239 QKEAEALKAEIEKAVGGE-AGRLLEGLVVTPSEGGLLVTISEQTDAPMFAVGSAVPAKDL 297 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ ++KIG +LA ++IRGHTD PF++ DNWRLS RA SAY +L++ G+ E R Sbjct: 298 VLAMEKIGTLLAERQGAVAIRGHTDGRPFKDGTYDNWRLSAARAQSAYYMLVRGGLKEQR 357 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ISGFA RL++ +DP +ANRRI+IL++ QG Sbjct: 358 VNQISGFADRRLQVPNDPYAAANRRIEILLQSGQG 392 >gi|302189799|ref|ZP_07266472.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae 642] Length = 349 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D + S IDL ++ N T Sbjct: 61 K--------------DPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIETETAETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVQENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + +SI GHTDA+PF + NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V R+ Sbjct: 239 QVARVVGYASSALYDHQNPTNPINRRIDIVVLTRKA 274 >gi|330873802|gb|EGH07951.1| flagellar motor protein MotB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 341 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ E+ Sbjct: 179 EDILLALADTIKSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPEE 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G A L +P NRRIDI+V ++ Sbjct: 239 QVARVVGHASSVLYDRDNPTGPINRRIDIVVLTKKA 274 >gi|302062274|ref|ZP_07253815.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato K40] Length = 341 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDRENPTNPVNRRIDIVVLTKKA 274 >gi|149928472|ref|ZP_01916707.1| flagellar motor protein [Limnobacter sp. MED105] gi|149822806|gb|EDM82057.1| flagellar motor protein [Limnobacter sp. MED105] Length = 322 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 62/337 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + ++ II+ KK+ ++ G+WKI YADF+T +MAFFL+MW++ +T + K I YF Sbjct: 5 DEERPIIVVKKIKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSEGDLKGISDYF 64 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N K + + T SV G+ + Q Sbjct: 65 NSPLKVAL----------------------VGGPGSGTATSVIDAGGTDLSRSVGQIKSG 102 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + +NS ++ +L R Sbjct: 103 STDKATNSSNADATAEALER-------------------------------------AES 125 Query: 190 KRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL +L +I + + ++ + T G+ I I+D+RN PMFD S++ Sbjct: 126 KRLLELKGEIEGLIDASDLMKQFKNQIMLDITPEGLRIQIVDERNRPMFDSGSAVLKDYM 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ + ++L +++ GHTDA+P+ N NW LS DRA ++ + + +G+ + Sbjct: 186 KDILRNLTKLLNQVPNKLTLSGHTDATPYAAGNKGYSNWELSADRANASRREMTLAGMPD 245 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G A DP + NRRI I+V +++ Sbjct: 246 SKMLRVVGLASSVSLDEKDPYAAVNRRIAIVVMNKRA 282 >gi|330965971|gb|EGH66231.1| flagellar motor protein MotB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 341 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHENPTNPVNRRIDIVVLTKKA 274 >gi|237653884|ref|YP_002890198.1| OmpA/MotB domain protein [Thauera sp. MZ1T] gi|237625131|gb|ACR01821.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 330 Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 140/337 (41%), Gaps = 51/337 (15%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ Q I+ K++ ++ G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 3 DDTQQPIVVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGDLEGIADYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K M +G D + I E +++ ++ G T + Sbjct: 63 QNPLKLAMQGGEGTGDSSS---------IIKGGGEDLSRKVGQVRRGDTPSTRAINLDAA 113 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ + I + + Sbjct: 114 PARVKSEAEATAQA---------------------------------------IAERRER 134 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL DL K+ + + + +L + G+ I ++D +N PMF +S+ P T Sbjct: 135 ARLIDLKGKLEAVIEANPSLRQFKNQLLIDIVSEGLRIQLVDAQNRPMFTSASAELRPYT 194 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306 +L++I L +S+ GHTD++ + R NW LS +RA +A + L+ G+ Sbjct: 195 RELLREIAAALNDVDNRVSMSGHTDSAQYAGGERGFSNWELSSNRANAARRELVAGGLEA 254 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G A DP++ ANRRI I+V +R Sbjct: 255 GKMLRVVGLADTAHLNPGDPLDPANRRISIVVLNRAA 291 >gi|254419004|ref|ZP_05032728.1| OmpA family protein [Brevundimonas sp. BAL3] gi|196185181|gb|EDX80157.1| OmpA family protein [Brevundimonas sp. BAL3] Length = 297 Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 144/333 (43%), Gaps = 51/333 (15%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +D+ I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN TD + KK I +YF Sbjct: 2 SDRPILIKKVKKVSGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKKGIAEYFA 61 Query: 71 PFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + T S GI + ++ S+ E + Sbjct: 62 PASVSETTSGSGGILGGTALGDDGPKSSGSQSVLEQLAP--------------------- 100 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 E ++ T S L+ I K E ++ AM+ Sbjct: 101 -----------EAPADATTAGSSTNLASASEAALQAEIQKREAAEFASAAESLRQAMQSM 149 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L +L+K++ + + T G+ I ++DQ MFD +S+ P Sbjct: 150 PELAELSKQL----------------IVDQTPEGLRIQLVDQEGRSMFDNNSARPNARAQ 193 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQVLMKSGVSED 307 V+L+ + +V+ ISI GHT A+P N A +W LS +RA + VL +GV D Sbjct: 194 VLLRAVAKVINQLPNRISITGHTSATPGSNRASGPADWTLSSERANGSRLVLQSAGVDAD 253 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ ++G A DP + NRRI I++ Sbjct: 254 RVYSVAGKAGSDPLYPDDPTLAGNRRIAIVLLR 286 >gi|28872066|ref|NP_794685.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|301384434|ref|ZP_07232852.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato Max13] gi|302132278|ref|ZP_07258268.1| flagellar motor protein MotB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855319|gb|AAO58380.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331014600|gb|EGH94656.1| flagellar motor protein MotB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 341 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDRENPTNPVNRRIDIVVLTKKA 274 >gi|104783884|ref|YP_610382.1| flagellar motor protein MotB [Pseudomonas entomophila L48] gi|95112871|emb|CAK17599.1| putative flagellar motor MotB protein [Pseudomonas entomophila L48] Length = 341 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 131/335 (39%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + I D P Sbjct: 61 KDPIGFSESGTPYIIDLGGSP--------------------------------------- 81 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 Q + + SE D D ++ E L + Sbjct: 82 --------QLAPEKTINPETKSEPTPDTSIQLDKDQVETMAEQVERERLELLLQELQNKV 133 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + L K +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 134 EENPQLQK-------------FKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGDFGNWELSANRANAARRALVAGGYPDGQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +P N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRENPFNPVNRRIDIIVLTKKA 275 >gi|170723854|ref|YP_001751542.1| flagellar motor protein MotB [Pseudomonas putida W619] gi|169761857|gb|ACA75173.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 339 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 133/335 (39%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRYGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D Sbjct: 61 KDPIGFSESGTPYVIDLGG----------------------------------------- 79 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + Q + + SE D D ++ E L + Sbjct: 80 ------SPQLAPEKTINPEEKSEPTPDTSIQLDKDQVETMAEQVERERLELLLQELQNKV 133 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + L K +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 134 EENPQLQK-------------FKDQILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + IS+ GHTDA P+ + NW LS +RA +A + L+ G +D+ Sbjct: 181 DILLAMADTIKAVPNKISVSGHTDAKPYSGSSEFGNWELSANRANAARRALVAGGYPDDQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L DP N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275 >gi|326319083|ref|YP_004236755.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375919|gb|ADX48188.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 312 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 62/334 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + I YF Sbjct: 7 QPIIIKRVKKGGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYF--- 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 +S K+ + + +S + G + K + ++ + Sbjct: 63 --------------------ASPLKVAMQGGDGSGNSSSIIPGGGNDLSKVHGQVRRSDS 102 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + S+++ + A + + R+ Sbjct: 103 DTATSRRTNIENARAEQ-----------------------------------ARQDQMRI 127 Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + L KI + +S + + T G+ I I+D +N PMFD S++ P + Sbjct: 128 KALQAKIDALISENPRLKEFKSQIRIDVTPDGLQIQIVDDQNRPMFDSGSALVKPYMRDI 187 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG L IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ + ++ Sbjct: 188 LREIGAALGGVENRISLAGHTDAAPYGNGDRGYSNWELSADRANASRRELVAAGMPDAKL 247 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A L +P NRRI I V ++ Sbjct: 248 GRVVGLAASDLLEPENPRAPVNRRITITVLTKEA 281 >gi|213967914|ref|ZP_03396060.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1] gi|213927257|gb|EEB60806.1| chemotaxis motB protein [Pseudomonas syringae pv. tomato T1] Length = 341 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + E + Sbjct: 100 -----------------------------------------DTVPIEAETSETKAEAVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDADNRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF N NW LS +RA +A + L+ + Sbjct: 179 EGILLALADTIRSVPNKISISGHTDATPFVGNNGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDRENPTNPVNRRIDIVVLTKKA 274 >gi|114797285|ref|YP_758982.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444] gi|114737459|gb|ABI75584.1| putative chemotaxis MotB protein [Hyphomonas neptunium ATCC 15444] Length = 287 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 52/328 (15%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 IIK+K ++ G+WK+ YADF+T +MAFFL+MW++NAT ++ +K I YFNP Sbjct: 10 PTIIKRKKVYKADGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYFNPTI 69 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + G L+ ++++ N+K+ + Sbjct: 70 PISRISGGG--------------SDGLNGSSIFSEDTYAKMGTGANRKETVENPAYGDGK 115 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 ++Q ++L + +E +K++ Sbjct: 116 TKDAQDQTEDVDTLAKQAE------------------------------------EKQIA 139 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D + + +LS + + + ++ + + GI++ I D +TP+F S P + ++ Sbjct: 140 DELQGLKESLSAE-SRQLSEHLMIKMSPEGIVLEITDSESTPLFPLGRSEPSETMVQLID 198 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + E A I I GHTD+ +RN A DNW LS DRA +A ++L ++ + DRI ++ Sbjct: 199 VVAESFAEFDNDIKIVGHTDSHRYRNGAIYDNWNLSADRANAARRLLSRADIPSDRIREV 258 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340 SG A + DP + NRRI I + Sbjct: 259 SGKADTDPLVKDDPQAAQNRRISITILT 286 >gi|288958120|ref|YP_003448461.1| chemotaxis protein [Azospirillum sp. B510] gi|288910428|dbj|BAI71917.1| chemotaxis protein [Azospirillum sp. B510] Length = 386 Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 140/328 (42%), Gaps = 19/328 (5%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG--------- 82 +WK+ YADF+T +MAFFL++W++N T D +K I YF+P + + G Sbjct: 28 AWKVAYADFVTAMMAFFLLLWLLNVTTSDQRKGIADYFSPVSVSREQSGSGGMLGGKTIT 87 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE- 141 + Q P + +S + D T + + ++ Sbjct: 88 VPGAQVSPSSPMSADVPVSGPPGYSSQQSDDADDPTEATSGPGQGTGPGKPAKAAPDADI 147 Query: 142 ---HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL----AMKRKKRLQD 194 + ++ +++ K + E+ KE + A K ++ Q Sbjct: 148 ADQKPNETRAEFQKRMEEMAKQLGIPGQKPGEKLSDFGERVKEAMNSLQGAAKEARQFQQ 207 Query: 195 LAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 A +I + + + + + ++ + T G+ I I+DQ MF S P+T ++Q Sbjct: 208 AATEIRQAIQSVPELEPLAQNLMIDQTPEGLRIQIVDQDRVSMFPAGSGQMYPQTRQLVQ 267 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++ + L +SI GHTD+SPF RDNW LS +RA + + L+ G++ RI + Sbjct: 268 QVAKALTKLPNKLSISGHTDSSPFPAGSGRDNWDLSTERANATRRALLAGGINPSRIQNV 327 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340 G A +A P + NRRI +++ Sbjct: 328 VGKADTDPLVADQPNSPRNRRITMVLLR 355 >gi|77456741|ref|YP_346246.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf0-1] gi|77380744|gb|ABA72257.1| chemotaxis MotB protein [Pseudomonas fluorescens Pf0-1] Length = 355 Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRIAGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + I D P + +N ++ Sbjct: 61 KDPVGFSESGTPYIIDLGGTPTLAPENTLN------------------------------ 90 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + K + +E + E L L +E + Sbjct: 91 ---------------PEVKSQPQPDKVTVDTEQVEGMAEQVEKERLELLLQELQNKVDEN 135 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T G+ I I+D N PMFD S+ P Sbjct: 136 PQLQKFKDQI----------------LFEITPNGLRIQIMDAENRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ N NW LS +RA +A + L+ + + Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYVGNGDFGNWELSANRANAARRALVAGSYPDSQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +P N NRRIDI+V ++ Sbjct: 240 VARVVGYASSALFDKENPFNPVNRRIDIVVLTKKA 274 >gi|146305660|ref|YP_001186125.1| flagellar motor protein MotB [Pseudomonas mendocina ymp] gi|145573861|gb|ABP83393.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 329 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V + ++ G+WKI +ADF T +MAFFLVMW++++ + KKAI YF Sbjct: 2 ENNQPIIVKR-VKKNAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E +S + IDL + Sbjct: 61 Q--------------DPIGFTESASPHAIDLGGSPTPAPDR------------------- 87 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + +E + +E +K E L + +E ++ Sbjct: 88 ------------TLNPEIQDLTESRDVDIDADQVESLADKLERERLELVLQELQNKVEEN 135 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 LQ +I LFE T+ G+ I I+D N PMF S+ P Sbjct: 136 PELQRFKDQI----------------LFEITQDGLRIQIVDAENRPMFALGSANLQPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA PF NW LS +RA +A + L+ G ++++ Sbjct: 180 DILLAMADTIRAVPNKISISGHTDAKPFVGRGDFGNWELSANRANAARRALIAGGYADEQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L +DP N NRRIDI+V ++ Sbjct: 240 VARVVGYASSALFDRNDPFNPVNRRIDIVVLTKKA 274 >gi|323529505|ref|YP_004231657.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323386507|gb|ADX58597.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 328 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 137/345 (39%), Gaps = 64/345 (18%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 S G++ + I+ + K A D ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 RSRGEEQEVPPPIIVRRSKKADDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFD 64 Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 K+ GI D N P S Sbjct: 65 KQ------------------GIEDYFNTPLSSLLG------------------------- 81 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 ++ + + S+ + + + D +K+ + P++ Sbjct: 82 --------------GNEGAAAARPSVVQGGGRDISDTRPGDGKKTQIEAAT----PVNVV 123 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 +A RLQ L +K+ S + A + T G+ I I+D +N PMF Sbjct: 124 PTVAPADAARLQQLKEKLISLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFASG 183 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQV 298 S + +L +IG L ISI GHTDA P+ NW LS +RA +A + Sbjct: 184 SPRLQTYAVAILTQIGAALNDVDNRISIAGHTDAVPYTGGPVGYSNWELSSERANAARRA 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ +++ ++ G A ++ NRRI ILV ++ Sbjct: 244 LVSGGMHGEKLLQVRGLADVLPLNSNVVDEPTNRRISILVMNKAA 288 >gi|212637803|ref|YP_002314328.1| MotB protein [Shewanella piezotolerans WP3] gi|212559287|gb|ACJ31741.1| MotB protein [Shewanella piezotolerans WP3] Length = 330 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 44/330 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + I+I++K P + G+WK+ +ADF +MA F+V+WI+ D + I QY Sbjct: 4 RPEPIVIRRKKRTKAKPGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLK 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 G T S FD P + ID + I + + ++ Sbjct: 64 --GDLYSTGSINPFDLSRSP-----SLIDFQGNIAIQQAVLPATSTGVDRSGPAMHNHIP 116 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +++ I E N +P + + Sbjct: 117 L---------------------------GKDNVKAGIGPELNSLVPG-------KFETQA 142 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ LA++I ++ + + V + G+ I + D N MF + SS P Sbjct: 143 QLEFLAREIEQVITDVSMNA---NVELQVVPQGVRILMHDNINQFMFTRGSSNMKPYFED 199 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L +G +L +SI GHTD+SP+ NW LS RA A +VL SGV D++ Sbjct: 200 LLMALGPILGKVENKMSISGHTDSSPYAGKTFTNWELSSKRALLARRVLEYSGVQRDQVI 259 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A IA DP +ANRRI++LV Sbjct: 260 QVTGMADQAPYIADDPAAAANRRIEMLVMT 289 >gi|312958642|ref|ZP_07773162.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gi|311287185|gb|EFQ65746.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 339 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D PE + + I+ Sbjct: 61 KDPIGFSESGTPFVIDLGGSPELAPERTIN------------------------------ 90 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + ++ + K + +E + E L L +E ++ Sbjct: 91 ---------------PEVKTEAPQEKIPIERDTVETMAEQVEQERLELLLQELQNKVEEN 135 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ +IS FE T G+ I I D N PMFD S+ P Sbjct: 136 PQMMKFKDQIS----------------FEITPEGLRIQITDAANRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ + + Sbjct: 180 DILLAMADTIKTVPNKISISGHTDAKPYAGQGDFGNWELSANRANAARRALVAGSYPDPQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ GFA +L DP N ANRRIDI+V ++ Sbjct: 240 VARVVGFASSQLFDHKDPFNPANRRIDIVVLTKKA 274 >gi|288942642|ref|YP_003444882.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288898014|gb|ADC63850.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 305 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 57/318 (17%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 ++ G+WKI +ADF T +MAFF+++WI+ +T +D K AI YFN M + Sbjct: 19 GGHHGGAWKIAFADFATAMMAFFMLLWIMGSTTEDQKAAISDYFNNPSV-FMGIATSPSQ 77 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 Q S + ID + + + ++ + + Sbjct: 78 AQGEGTGSKPSLIDFEGAIDMGPPTPEPELTALDP------------------------- 112 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 E+ +L + D + + K L + S TL+ Sbjct: 113 ------ERLDELAREQDAAR--------------------LAALKELLERKLDQSETLAP 146 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 ++ V G+ + I+D+ + MFD S+ T +L+++G ++ Sbjct: 147 YKDQLLIDIV-----PEGLRVQIVDKEHRSMFDLGSAKLKDYTSDILRELGGLINQVPNR 201 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 IS+ GHTDA P ++ NW LS +RA +A + L+ G+ D++ ++ GFA SD Sbjct: 202 ISLTGHTDARPLGGLSYSNWELSTERANAARRALVAGGMRADKVGRVVGFASTVPFDTSD 261 Query: 326 PMNSANRRIDILVEDRQG 343 P N NRRI ++V R+ Sbjct: 262 PNNPINRRISLIVMTREA 279 >gi|190572619|ref|YP_001970464.1| flagellar motor protein MotB [Stenotrophomonas maltophilia K279a] gi|190010541|emb|CAQ44150.1| putative chemotaxis protein [Stenotrophomonas maltophilia K279a] Length = 312 Score = 232 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 144/334 (43%), Gaps = 59/334 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN +I+++ ++ GSWK+ YADF+T +MAFFLV+W++ T+ + + AI +YF Sbjct: 3 ENKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + P S + D+ G++N +Q + Sbjct: 63 R--------NPSPLSGQNATPAPGMAGPGGASTSMIKLGGATDISRGNSNDP--FQNQKE 112 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + QQ + K Sbjct: 113 AVPQPVDQQQ-----------------------------------------------RDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L+ L K++ +S A + +L + T G+ I I+D++N PMFD S+ P T Sbjct: 126 QQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ E L H IS+ GHTD + + NW LS DRA +A + L+ G+ + Sbjct: 186 QQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALVDGGLEDS 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +I+++ G + L +DP N NRRI I+V + Sbjct: 246 KITRVVGLSSSVLFDKTDPQNPINRRISIVVMTK 279 >gi|70734060|ref|YP_257700.1| flagellar motor protein MotB [Pseudomonas fluorescens Pf-5] gi|68348359|gb|AAY95965.1| motility protein, MotB family [Pseudomonas fluorescens Pf-5] Length = 372 Score = 232 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 133/335 (39%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRFAGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + I D Sbjct: 61 KDPIGFSESGTPYIID-------------------------------------------- 76 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + K + +E + E L L +E ++ Sbjct: 77 -LGGSPELAPDNTLNPEIKSQPQPDKVTVDADQVEGMAEQVERERLELLLQELQNKVEEN 135 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T G+ I I+D N PMFD S+ P Sbjct: 136 PQLQKFKDQI----------------LFEITPDGLRIQIMDAENRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 180 DILLAMADTIKTVPNKISISGHTDAKPYSGTGDFGNWELSANRANAARRALVAGGYPDPQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ GFA L DP N NRRIDI+V ++ Sbjct: 240 VARVVGFASSALFDRKDPFNPVNRRIDIVVLTKKA 274 >gi|167035946|ref|YP_001671177.1| flagellar motor protein MotB [Pseudomonas putida GB-1] gi|166862434|gb|ABZ00842.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 350 Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 62/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q II+K+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIVKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 D E + IDL + ++ Sbjct: 61 K--------------DPIGFSESGTPYVIDLGGSPELAPEKTINPEVKAEPTQEST---- 102 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ K+ + +E+ + L++ NK E Sbjct: 103 ----------TQLSKDQVETMAEQVERERLELLLQELQNKVE------------------ 134 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 135 --------------ENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ G + + Sbjct: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGEFGNWELSANRANAARRALVAGGYPDGQ 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L DP N NRRIDI+V ++ Sbjct: 241 VARVVGYASSSLFDRKDPFNPVNRRIDIIVLTKKA 275 >gi|330807221|ref|YP_004351683.1| Chemotaxis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375329|gb|AEA66679.1| Chemotaxis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 344 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 136/335 (40%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRIAAGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + I D P + ++ Sbjct: 61 KDPVGFTESGTPYIIDLGGSPTLAPDTTLNPE---------------------------- 92 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + K + +E + E L L +E ++ Sbjct: 93 -----------------VKSQPQPDKVTTDTEQVEGMAEQIERERLELLLQELQNKVEEN 135 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +LQ +I LFE T G+ I I+D N PMFD S+ P Sbjct: 136 PQLQKFKDQI----------------LFEITPNGLRIQIMDAENRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ +++ Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYVGKGDFGNWELSANRANAARRALVAGSYPDEQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G+A L DP N NRRIDI+V ++ Sbjct: 240 VARVVGYASSALFDRKDPFNPVNRRIDIVVLTKKA 274 >gi|89072298|ref|ZP_01158877.1| chemotaxis LafU protein [Photobacterium sp. SKA34] gi|89051830|gb|EAR57282.1| chemotaxis LafU protein [Photobacterium sp. SKA34] Length = 331 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 83/333 (24%), Positives = 133/333 (39%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N + I+ K+ V + G+WK+ +ADFM LMA FLV+W++ D+ + AI YF Sbjct: 2 QNTEQIVFKRAVKRHSHQQHGGAWKVAFADFMIALMALFLVLWLLQVVDEKERTAIVAYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N S FD N P + ID D Sbjct: 62 NNSSV-FDEGSGNPFDTDNSP-----SPIDFGGD-------------------------- 89 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++Q + S+ + G E + +P + + + Sbjct: 90 --AADMSAQNAAMTMKSIYNGNGNGP--------------ESDALIPG-------SFETQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LA + T + A + + T G+ +++ D MF + ++ P Sbjct: 127 EQLSILASVVEETAKQVSAQG---NIAIDITPQGLRVTLQDDFKQNMFHRGNANLTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL I + + I I GHTDA+ F+N + NW LS RA A Q L+ G+ D Sbjct: 184 DVLLTIAPIFKQISNSIIISGHTDATQFKNRFSRQTNWELSSSRANVARQTLISGGMPSD 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G A L DP S NRRI++ V Sbjct: 244 RVLQVAGMAERALLNKQDPSASENRRIELFVLT 276 >gi|167626173|ref|YP_001676467.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167356195|gb|ABZ78808.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 336 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 44/330 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + ++I++K + G+WK+ +ADF +MA F+V+WI+ D + I QY N Sbjct: 4 RPEPVVIRRKKRSKAKAGHGGAWKVAFADFTLAMMALFMVLWIMQIADQQERTMIVQYLN 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 G S F+ P D + Q+ Sbjct: 64 --GDLHDDGSINPFNLGGAPSM------------------FDFQGNIAIQQAVLPAAATG 103 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + + + + + +G +L + + + Sbjct: 104 VERSGPAMHNRIPQGTENAKAGRGPELNSLVPGK---------------------FETQA 142 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ LAK+I + + ++ V + G+ I + D N MF + S+ P Sbjct: 143 QLEFLAKEIDKVIENV---SMSANVELQVVPQGVRILMHDNVNQFMFTRGSADMKPYFED 199 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L +G +L+ I+I GHTD+SP+ NW LS RA A +VL G+ ++ Sbjct: 200 LLMALGPLLSQVENKITISGHTDSSPYAGKKFTNWELSSKRALLARRVLEYGGLRRHQVI 259 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A + DP +ANRRI++LV Sbjct: 260 QVTGMADQAPYVIKDPAAAANRRIEVLVMT 289 >gi|312115287|ref|YP_004012883.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220416|gb|ADP71784.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 358 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 16/356 (4%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 + KN+ I+++KK+ D N+ G WKI YADFMT +M FFLVMW++N++ + Sbjct: 2 ARHKKNERAHADIVVRKKLYRSDGDNHGGVWKIAYADFMTAMMTFFLVMWLVNSSSKERL 61 Query: 63 KAIEQYFNP-------FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 I YFNP + A+ +++P + + D H+ + Sbjct: 62 SQIANYFNPVKLNEHAPPAKDVAATAPKAQDKSPAAGRPNSAVVDPKDRHVFSEEELTRN 121 Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK------DLCKSTDLEKSINK 169 + + E + S Q S L+RD + ++ ++ Sbjct: 122 PFGVLTQLATQAEEALRIASKEQDSSAAAGQLSRDPFVAEPRLVRTAKVSTSSGSQTAPG 181 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA---DNIVKGVLFETTRTGILI 226 E + + +RK+ LA++I + + + V G LI Sbjct: 182 EWSDAPKSHKSANVAETERKEPAASLAEQILKDIESFQSNLPQSFRVQVSVAGVAEGTLI 241 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 S++D MFD S++P P+T++V+ +IG++++ I IRG+TD PF NW Sbjct: 242 SLMDDTKRSMFDVGSAMPKPDTVLVMTRIGDIISKYPGKIIIRGYTDGRPFAGDRYGNWV 301 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 LS RA A+ +L + + + R+ I G+A + + A DP+ NRRI++L++D + Sbjct: 302 LSSQRARMAFLMLARGKIGDGRVLSIEGYADRQPRNADDPLAPENRRIEVLLKDSE 357 >gi|83955101|ref|ZP_00963757.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1] gi|83840430|gb|EAP79603.1| chemotaxis MotB protein [Sulfitobacter sp. NAS-14.1] Length = 394 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 16/332 (4%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q + KK I+ ++ G WK+ YADFMT +MAFFL+MWI+++ D+ + I +YF Sbjct: 6 QPRVFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFT-- 63 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + G+ D + + + I +L +++ + Sbjct: 64 -NATLPGGSGVLDGATLGPPGTLT----ASNGAIVARGSELGKIDDPASAKWEIRDETAT 118 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + Q + + T + S + + + + ++ Sbjct: 119 SVPDETQIGSEDGAHENPAAANVASASQTASDGSKSAGDATIDNVHALDN-------EKF 171 Query: 193 QDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + L + I + D + K ++F+ T G+ I IIDQ PMF + T + Sbjct: 172 KKLEQDILQAMQENPDLDPLKKNLIFQQTPEGLQIQIIDQEGQPMFYSGRAEMQGATDQL 231 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L +G+ LA I++ GHTDA F N DNW LS DRA + +V SGV+ DRI Sbjct: 232 LANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRANATRRVFEASGVARDRII 291 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++SG A + +P +++NRRI + V+ ++ Sbjct: 292 RVSGLADTAPLVPENPTDASNRRITVSVQYQK 323 >gi|241763663|ref|ZP_04761713.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] gi|241367138|gb|EER61504.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] Length = 310 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 62/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 3 EKKLQPIIIKRIKKSGHAAH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQ----- 56 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI N P + + D + + ++ Sbjct: 57 -------------GIAAYFNSPLKVAMVGGDGAGNSSSVIPGG---------GNDLSKVH 94 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + Q E + T +E+ A + Sbjct: 95 GQVRRSDSDQDKERRASIDTTRAER-------------------------------AKQD 123 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R++ L KI + + + + + T G+ I I+D +N PMFD S++ P Sbjct: 124 AARIKALQAKIDAMITENPRLNEYKSQIRIDVTPDGLQIQIVDNQNRPMFDSGSALVKPY 183 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG L IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ Sbjct: 184 MRDILREIGAALGGVENRISLAGHTDAAPYGNSDRGYSNWELSADRANASRRELVSAGMP 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + ++ ++ G A L +P ANRRI I V R+ Sbjct: 244 DAKLGRVVGLAASDLLEPDNPRAPANRRITITVLTREA 281 >gi|83944198|ref|ZP_00956654.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36] gi|83845065|gb|EAP82946.1| chemotaxis MotB protein [Sulfitobacter sp. EE-36] Length = 394 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 145/332 (43%), Gaps = 16/332 (4%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q + KK I+ ++ G WK+ YADFMT +MAFFL+MWI+++ D+ + I +YF Sbjct: 6 QPRVFKKVEVIEGGGHHGGGWKVAYADFMTAMMAFFLLMWILSSADEQKLRGIAEYFT-- 63 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + G+ D + + + I +L +++ + Sbjct: 64 -NATLPGGSGVLDGATLGPPGTLT----ASNGAIVARGSELGKIDDPASAKWEIRDETAT 118 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + Q + + + S + + + + ++ Sbjct: 119 SVPDETQIGSEDGAHENPAAANVASASQAASDGSKSAGDATIDNVHALDN-------EKF 171 Query: 193 QDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + L + I + D + K ++F+ T G+ I IIDQ PMF + T + Sbjct: 172 KKLEQDILQAMQENPDLDPLKKNLIFQQTPEGLQIQIIDQEGQPMFYSGRAEMQGATDQL 231 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L +G+ LA I++ GHTDA F N DNW LS DRA + +V SGV+ DRI Sbjct: 232 LANLGKSLARLPNKITLSGHTDAVRFANSQKYDNWDLSSDRANATRRVFEASGVARDRII 291 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++SG A + +P +++NRRI + V+ ++ Sbjct: 292 RVSGLADTAPLVPENPTDASNRRITVSVQYQK 323 >gi|152980289|ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacterium sp. Marseille] gi|151280366|gb|ABR88776.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille] Length = 328 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 63/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 E + IIIK+ + ++ G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 3 DEGLRPIIIKR-IKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGDLQ----- 56 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI D + P + + S D + + +++ Sbjct: 57 -------------GIADFFSTPLKVAMAGGSGSGDSSSVIKGGGKDMTRIDGQQK----- 98 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 KG+DL + + + E L + Sbjct: 99 ------------------------KGEDLTPAKNFNLKAAEAE------------LERQE 122 Query: 189 KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 RL+ L ++I + + +L + T G+ I I+D++N PMF + + P Sbjct: 123 VNRLKALKERIEKAIDTIPGLQQFKNQLLIDITTEGLRIQIVDEKNRPMFALARAELQPY 182 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 T V+L +I ++L IS+ GHTDA+P+ + NW LS DRA ++ + L+ G++ Sbjct: 183 TKVILHEIAKILNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGMA 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E+++ ++ G + L +SDP+N NRRI I+V +++ Sbjct: 243 ENKVLRVVGLSSAVLFDSSDPLNPVNRRISIIVLNKKA 280 >gi|148359858|ref|YP_001251065.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby] gi|296107908|ref|YP_003619609.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy] gi|148281631|gb|ABQ55719.1| hypothetical protein LPC_1786 [Legionella pneumophila str. Corby] gi|295649810|gb|ADG25657.1| chemotaxis protein MotB [Legionella pneumophila 2300/99 Alcoy] Length = 312 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 63/335 (18%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N + I +K+ +D ++ GSWKI YADF+T +MAFFL+MW++ + + K I +YF Sbjct: 27 NTHYTPIIRKIKKNDHKHHGGSWKIAYADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFK 86 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K + + + + + + N D Sbjct: 87 QPMKMALFGGESMGNRKATIKGGGPNIED------------------------------- 115 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 ++ Q S K + K K++ +S E K Sbjct: 116 ----TDGQVSATNKPLINESIAKDKEIVESQANEI------------------------K 147 Query: 191 RLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L++L +I+ ++ + + K +L + G+ I +ID + PMFD S PE Sbjct: 148 KLEELKSEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIE 207 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L I ++L I+I+GHTDA+P+ N NW LS RA +A + L+K+G+ E Sbjct: 208 PILANIAKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDE 267 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +++ ++G++ L +P N NRRI I+V + Sbjct: 268 NKVMTVTGYSSTVLLDKKNPYNPENRRISIIVMKK 302 >gi|300312289|ref|YP_003776381.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] gi|300075074|gb|ADJ64473.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 139/338 (41%), Gaps = 63/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 E + II+K+ + ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 3 DEGLRPIIVKR-IKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDL------ 55 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI + P + + S D N+V G ++ Q + Sbjct: 56 ------------NGIAEYFKTPLKVAMAGGSGSGDA----NTVLPGGGKDLTRQDGQLRK 99 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + Q + + L + Sbjct: 100 GETDVTARKQNLKQAQQELEKM-------------------------------------E 122 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + RL++L ++ + S +L + T G+ I I+D++N PMF +S+ P Sbjct: 123 RTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPY 182 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 T +L +IG L IS+ GHTDA+P+ NW LS DRA ++ + L+ G+ Sbjct: 183 TKEILHEIGRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGGMD 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E ++ ++ G + L DP N NRRI I+V +++ Sbjct: 243 ESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKA 280 >gi|82702437|ref|YP_412003.1| flagellar motor protein MotB [Nitrosospira multiformis ATCC 25196] gi|82410502|gb|ABB74611.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] Length = 308 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 142/337 (42%), Gaps = 64/337 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + I+IKK + G WKI YADF+T +MAFFL+MW++ + + I YF Sbjct: 3 QTQHRIVIKKVRRQSQG--HGGQWKIAYADFVTAMMAFFLLMWLLGSATRAQLQGISDYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + ++ PER + S+ + K+ Sbjct: 61 -------------MKPLESVPERDIGSGDRTSLIQGGGKDL------------------- 88 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + ++K+ L + + L + Sbjct: 89 ---------------------------MRRDGQVQKTDVDSSEKPLSLRAAQLELERRDA 121 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+DL +++ + S K +L + T G+ I IID +N PMF + + P T Sbjct: 122 RRLEDLKRRLERLIESNPTMHEFRKQLLLDITTEGLRIQIIDDKNRPMFALARAELEPHT 181 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +LQK+G VL +S+ GHTD++P+ + NW LS DRA ++ + L+ G++E Sbjct: 182 REILQKLGSVLNEMPNKLSLSGHTDSTPYASGEKNYSNWELSADRANASRRELILGGMNE 241 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +I ++ G + L +DP N NRRI I+V + Sbjct: 242 QKIMRVVGLSSAVLFDRNDPTNPVNRRISIIVMSNRA 278 >gi|153836044|ref|ZP_01988711.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810] gi|149750798|gb|EDM61543.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ3810] Length = 330 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + G ++ Sbjct: 93 --------PSKHNSNHVVSSYFQGDGDGPEINSLVPG---------------------TF 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLAALAKVIEEMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + + T + I GHTDA PF R + NW LS RA A + L++ G+ Sbjct: 181 FFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 276 >gi|28901412|ref|NP_801067.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362966|ref|ZP_05775835.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030] gi|260880253|ref|ZP_05892608.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034] gi|260895370|ref|ZP_05903866.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466] gi|1346409|sp|Q03478|LAFU_VIBPA RecName: Full=Chemotaxis protein LafU gi|677910|gb|AAA62355.1| LafU [Vibrio parahaemolyticus] gi|1518954|gb|AAB07358.1| lateral flagellar MotB [Vibrio parahaemolyticus] gi|28809959|dbj|BAC62900.1| chemotaxis LafU protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085707|gb|EFO35402.1| chemotaxis protein LafU [Vibrio parahaemolyticus Peru-466] gi|308092138|gb|EFO41833.1| chemotaxis protein LafU [Vibrio parahaemolyticus AN-5034] gi|308111945|gb|EFO49485.1| chemotaxis protein LafU [Vibrio parahaemolyticus K5030] Length = 330 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + G ++ Sbjct: 93 --------PSKHNSNHVVSSYFQGDGDGPEINSLVPG---------------------TF 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLAALAKVIEEMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + + T + I GHTDA PF R + NW LS RA A + L++ G+ Sbjct: 181 FFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 276 >gi|188592087|ref|YP_001796685.1| flagellar motor protein motb [Cupriavidus taiwanensis LMG 19424] gi|170938461|emb|CAP63448.1| Chemotaxis protein MotB; Flagellar motor rotation, linking torque machinery to cell wall [Cupriavidus taiwanensis LMG 19424] Length = 321 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 135/339 (39%), Gaps = 68/339 (20%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + +D II ++ P+ SWKI YADFMT +MA FLV+W++++ + T + I + Sbjct: 2 SSAHDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAE 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K+ + E +++ + G + ++ + Sbjct: 62 YFRMPL-----------------------KVAIVGGEKSSQSPSVIPGGGMDVMRKDGEI 98 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + +Q + + Sbjct: 99 MRAHDNDPSDEQ------------------------------------------RRNEQQ 116 Query: 188 RKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +RL+ L +++ + V +L + T G+ I I+D +N PMF S+ Sbjct: 117 EAQRLRALKQRLEQIIENNPVLRQFRPQLLLDITSEGLRIQILDTQNRPMFRTGSATVES 176 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG VL +S+ GHTDA+ + N NW LS DRA ++ + L+ G+ Sbjct: 177 YMRTILREIGPVLNELPNKVSLSGHTDAANYSNGERTYSNWELSGDRANASRRELIAGGM 236 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E ++ ++ G A D + NRRI I+V +++ Sbjct: 237 QEGKVLRVLGLAATMPLDKQDLLAPVNRRISIVVLNQKA 275 >gi|284007193|emb|CBA72482.1| flagellar motor protein MotB [Arsenophonus nasoniae] Length = 320 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 120/318 (37%), Gaps = 74/318 (23%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 + GSWKI YADFMT +MAFFLVMWI++ + I YF K + Sbjct: 20 HYHGGSWKIAYADFMTAMMAFFLVMWILSISSPQELIRIADYFRTPLKVSLN-------- 71 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 N P+ I + IT D NQ Sbjct: 72 -NGPKSGDVTNIIPGGGKDITYREGDTLPKEPNQ-------------------------- 104 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 + + E L ++ L + RLQDL Sbjct: 105 --------------------LPETEQDRFKKLQQDLELLIMNDPRLQDLK---------- 134 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 +L + G+ I IID N PMF S++ +L + VL I Sbjct: 135 ------PNLLIDLMDEGLQIQIIDGENRPMFASGSAVIDKNMQKILHVLAPVLNDYPNKI 188 Query: 267 SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 S+ GHTD++ + NW LS DRA S+ + L+ G+ E +I ++ G A + Sbjct: 189 SLAGHTDSTAYAKGGYGYSNWELSADRANSSRRTLISGGLDEHKIMRVVGMASTVPLE-N 247 Query: 325 DPMNSANRRIDILVEDRQ 342 +P +ANRRI ILV +++ Sbjct: 248 NPAAAANRRISILVLNKE 265 >gi|145297473|ref|YP_001140314.1| LafU [Aeromonas salmonicida subsp. salmonicida A449] gi|22758827|gb|AAN04225.1| LafU [Aeromonas salmonicida] gi|142850245|gb|ABO88566.1| LafU [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 48/334 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N + IIIK++ P G+WK+ +ADF +MAFF+V+WI+ + + ++A+ Sbjct: 2 RNHEQIIIKRQQRRSSAPKGGGAWKVAFADFTLAMMAFFMVLWILAVSSQEEREAVASRL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + ++M + FD N P +DL + + + Sbjct: 62 RDY--SIMDSEANPFDISNSP-----YPVDLGGNPSVLEELSP----------------- 97 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + E+G+ + K + +SI + + ++ + Sbjct: 98 -------------------KFVEEGQRMPKHMERNRSIFS--DGVSGGYENLLVGKIEGE 136 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +++ LA I S + A N + + G+ I I D M+ + S+ P Sbjct: 137 AQMKQLAGFIGSLADQMQAKN---NLELQLVPQGLRILIRDDDEREMYSRGSARISPFFR 193 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + + + I GHTD++PF NW LS DRA A +VL+ G+ +R+ Sbjct: 194 HMLMALAPIFQRVENRVMISGHTDSTPFAGDNYSNWELSSDRAMMARRVLLAGGMPPERV 253 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ + L+ +DP S NRRI++LV Q Sbjct: 254 GQVVAMSDTMLENTADPRGSENRRIELLVMTSQA 287 >gi|283784104|ref|YP_003363969.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168] gi|282947558|emb|CBG87111.1| lateral flagellar motor protein B [Citrobacter rodentium ICC168] Length = 331 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 70/343 (20%), Positives = 140/343 (40%), Gaps = 52/343 (15%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M ++ + II++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKAANRRDRGAKTTIIRRQIKKNHGGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKT 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I + Q+ ++ + I + + + Sbjct: 61 ERENIVAALH---------------GQSIFNGGGLAPLNKIGKQTIVPGASSKSVTRSRP 105 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K E + SE+ K + + ++ K+++ Sbjct: 106 DKASPAKEE------------------VKVSEEVAKKAKDVNEKTALLKKKSATELGELA 147 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 I ++ RK ++ + E G+ + I D +N MF++ Sbjct: 148 TSIQSIARKAHME-------------------TNLEMEIVPQGLRVLIKDDKNRNMFERG 188 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S+ +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL Sbjct: 189 SARIMPFFQSLLTELAPVFDSLDNKIIITGHTDAMAYKSDIYNNWNLSGDRALSARRVLE 248 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 249 QAGMPEDKVMQVSAMADQMLLDAKNPESAGNRRIEIMVLTKSA 291 >gi|149377734|ref|ZP_01895468.1| Flagellar motor protein [Marinobacter algicola DG893] gi|149357960|gb|EDM46448.1| Flagellar motor protein [Marinobacter algicola DG893] Length = 319 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 82/333 (24%), Positives = 137/333 (41%), Gaps = 69/333 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +Q II+K+K + ++ GSWK+ +ADF T +MAFFLV+W+ + +A+E YF Sbjct: 2 EEQPIIVKRKKKVA-AGHHGGSWKVAFADFATAMMAFFLVLWLTATASPEQIRAVEGYFK 60 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 D E S N +DL + S + Sbjct: 61 --------------DPVGFTEGGSPNPVDLEGSASVINESSED----------------- 89 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 S+ Q + L + E+ + DL++ I + + Sbjct: 90 -IERSDIQIEDQVVEELAQTLEQQQMEELFQDLKERIE-------------------QNE 129 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 LQ+ ++ L + T G+ I I+D+ PMFD + + Sbjct: 130 TLQEFKDQL----------------LIDITSEGLRIQIVDRSQRPMFDSGRAELKYYSQD 173 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L ++ + L +SI GHTD++PF NW LS DRA +A + L+ GV +++I Sbjct: 174 ILFELAKTLGTVNNKLSITGHTDSTPFSGRPGYTNWELSADRANTARRALVAGGVRQNQI 233 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++ G + L DP NRRI I+V +++ Sbjct: 234 GRVVGLSDSVLFDQDDPQAPVNRRISIIVMNKK 266 >gi|328469346|gb|EGF40292.1| chemotaxis LafU protein [Vibrio parahaemolyticus 10329] Length = 330 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + G ++ Sbjct: 93 --------PSKHNSNHVVSSYFQGDGDGPEINSLVPG---------------------TF 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLAALAKVIEEMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + + T + I GHTDA PF R + NW LS RA A + L++ G+ Sbjct: 181 FFEDLLLALAPLFERVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 276 >gi|260779337|ref|ZP_05888229.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] gi|260605501|gb|EEX31796.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] Length = 330 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ +DD + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QRQEQVVFKRTKTVDDDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 S +FD+ NP + S S + IDL+ D + Sbjct: 62 Q---------SASVFDKSYGNPFDTSQSISPIDLAADSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + +G E + +P Sbjct: 93 --------PSRHDSTHIVSSFFQGDGEGP--------------ETDSLIPG-------TF 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++RL LAK I + + A V T G+ I + D MF + S P Sbjct: 124 DTQERLAALAKVIKEAVRQISAQG---NVNVTVTPQGLRIVLQDDYKQHMFGRGGSELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + I GHTD++ F+ R NW LS RA +A L+ G+ Sbjct: 181 FFEDLLLALAPVFKRVENPLIISGHTDSTRFKGHVERRSNWELSASRANAARHTLVAGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++R+ +++G + L +P +S NRRI++ + Sbjct: 241 PDERVLQVTGMSDRALLNGDEPESSENRRIELFILT 276 >gi|254699266|ref|ZP_05161094.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513] gi|261749708|ref|ZP_05993417.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513] gi|261739461|gb|EEY27387.1| flagellar motor protein MotB [Brucella suis bv. 5 str. 513] Length = 345 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 52/362 (14%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + II+++ D ++ G WKI YADFMT + Y Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAM---------------------ASY 44 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID-EHITKNSVDLKIGSTNQKKQYQRL 127 FNP LM +N +R + + + E TK D + + +++ Q Sbjct: 45 FNPV--KLMDRHSSPKGVENVDQRDGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLF 102 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK----- 182 L+ + + + G S + F P K Sbjct: 103 REPYAMLAELAHETGVLQNQSAKGDGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDL 162 Query: 183 ---------------ILAMKRKKRLQDLAKKISSTLSGLVADNIVK--------GVLFET 219 K+ + ++L + +G A N K V Sbjct: 163 TPPAPQTVPQTAPLPQAQPKKAETQEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVP 222 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 G++I + D+ + MF S+ P + +L++I +V+A + I GHTDA PF++ Sbjct: 223 VEGGVMIQLTDKVDYGMFTIGSAKPDARVVQMLERIAQVIARQPGEVIISGHTDARPFKS 282 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 DNWRLS RA AY +L++ G+ E R+ ++ G+A + K +DP + NRRIDI ++ Sbjct: 283 ATYDNWRLSSARAQMAYYMLVRGGLDEKRVLRVEGYADRQPKNPNDPNAAENRRIDIFIK 342 Query: 340 DR 341 + Sbjct: 343 SK 344 >gi|254228819|ref|ZP_04922242.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262396462|ref|YP_003288315.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] gi|151938766|gb|EDN57601.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262340056|gb|ACY53850.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] Length = 330 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHSHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 S+H N + +G D N Sbjct: 94 -------------SKHNSNHVVSSYFRGDGDGPEIDSLIPGN-----------------F 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLAALAKVIERMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + I GHTDA PF R + NW LS RA A L++ G+ Sbjct: 181 FFEDLLLALAPVFQRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ V Sbjct: 241 PDDRVMQVTGMSDRALLNPDEPDSSENRRIELFVLT 276 >gi|52842529|ref|YP_096328.1| flagellar motor protein MotB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629640|gb|AAU28381.1| chemotaxis (motility protein B) transmembrane [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 312 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 145/329 (44%), Gaps = 63/329 (19%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 I +K+ +D ++ GSWKI +ADF+T +MAFFL+MW++ + + K I +YF K Sbjct: 33 IIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVA 92 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + + + + + N D ++ Sbjct: 93 LFGGESMGNRKATIKGGGPNIED-----------------------------------TD 117 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q S K + K K++ +S E K+L++L Sbjct: 118 GQVSATNKPLINESIAKDKEIVESQANEI------------------------KKLEELK 153 Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +I+ ++ + + K +L + G+ I +ID + PMFD S PE +L I Sbjct: 154 SEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANI 213 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++L I+I+GHTDA+P+ N NW LS RA +A + L+K+G+ E+++ + Sbjct: 214 AKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTV 273 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDR 341 +G++ L +P N NRRI I+V + Sbjct: 274 TGYSSTILLDKKNPYNPENRRISIIVMKK 302 >gi|84502387|ref|ZP_01000523.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597] gi|84389199|gb|EAQ01996.1| chemotaxis MotB protein [Oceanicola batsensis HTCC2597] Length = 339 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 11/308 (3%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 WK+ YADFMT +MAFFL++WI+ A+D++ + + YF P +G+ D Sbjct: 26 WKVAYADFMTAMMAFFLLLWILAASDEEALRGLADYFTPSLSQAGGKGQGMLDGTIIAPN 85 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 Q + + + + + I + S+ + E Sbjct: 86 GDQGGSNTPDGNTRLPSFGQENPLAVFDSRLRDEATDVIVEYETKEDGTMEPKSM-GEGE 144 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNI 211 +D + + EE Y + +R+ ++ L ++I + V +++ Sbjct: 145 DEEDGSAAEQAAERQALEEQY--------QAEVKEREANMERLEEEIRRHIQERVDLEDL 196 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + + F+ T G+L+ I+D+ MF + S+ T +++ IGE + I I GH Sbjct: 197 GENLRFDRTSEGLLVQIMDKEGRSMFARGSARVDSRTRDLIRIIGESIVDMQNAIVITGH 256 Query: 272 TDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TDA PF N+ NW LS DRA + +VL+ +GVS RI +ISG A A DP + Sbjct: 257 TDAVPFVNNLGYSNWELSADRANATRRVLIDTGVSPARIKRISGLASTDPLNADDPEAAE 316 Query: 331 NRRIDILV 338 NRRI +L+ Sbjct: 317 NRRIGVLL 324 >gi|229588064|ref|YP_002870183.1| flagellar motor protein MotB [Pseudomonas fluorescens SBW25] gi|229359930|emb|CAY46784.1| chemotaxis MotB protein [Pseudomonas fluorescens SBW25] Length = 339 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 63/335 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+++ + K AI YF Sbjct: 2 ENNQPIIIKR-VKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + D +G + Q + + Sbjct: 61 KDPIGFSESGTPFVID-----------------------------LGGSPQLAPERTINP 91 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + ++ ++++ +E+ + L++ K E Sbjct: 92 EVKTEAPQEKIPIERDTVEAMAEQVEQERLELLLQELQTKVE------------------ 133 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + FE T G+ I I D N PMFD S+ P Sbjct: 134 --------------ENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFE 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + + + ISI GHTDA P+ NW LS +RA +A + L+ + + Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYAGQGDFGNWELSANRANAARRALVAGSYPDPQ 239 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ GFA +L DP N NRRIDI+V ++ Sbjct: 240 VARVVGFASSQLFDHKDPFNPINRRIDIVVLTKKA 274 >gi|319944147|ref|ZP_08018425.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599] gi|319742641|gb|EFV95050.1| chemotaxis MotB protein [Lautropia mirabilis ATCC 51599] Length = 309 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 76/335 (22%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + Q I++K+ ++ G+WKI YADF+T +MAFFL+MW++++ ++T K I +YF Sbjct: 7 KKAQPIVVKRIKKAAH-GHHGGAWKIAYADFVTAMMAFFLLMWLLSSASENTLKGISEYF 65 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K + G+ D P +T+ + G T Sbjct: 66 QQPLKLSLIGGSGVGDATAP---------VPGGGTDLTRKDGQVNKGIT----------- 105 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 KGKD K L+K + E + + Sbjct: 106 -----------------------KGKDSKKDVKLQKLKERLEASIM------------QV 130 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPET 248 L+ L +I E T G+ I I+D P+F S++ P Sbjct: 131 PALEALRDQI----------------RLEMTVDGLSIQIVDASKKPLFASGKSTVLSPNM 174 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKSGVS 305 +++ IG++L +S+ GHTDA+P+ NW LS +RA S+ + L++ G+ Sbjct: 175 RELMRTIGKLLNEVENPVSLSGHTDATPYAGGSTGGYSNWELSTERANSSRRELVQGGMD 234 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++I ++ G ++P + NRRI I+V + Sbjct: 235 PNKILRVQGLGAVVPLDKTNPNDPMNRRIAIVVLN 269 >gi|54298209|ref|YP_124578.1| flagellar motor protein MotB [Legionella pneumophila str. Paris] gi|53751994|emb|CAH13420.1| hypothetical protein lpp2267 [Legionella pneumophila str. Paris] Length = 312 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 145/329 (44%), Gaps = 63/329 (19%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 I +K+ +D ++ GSWKI +ADF+T +MAFFL+MW++ + + K I +YF K Sbjct: 33 IIRKIKKNDHKHHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVA 92 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + + + + + N D ++ Sbjct: 93 LFGGESMGNRKATIKGGGPNIED-----------------------------------TD 117 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q S K + K K++ +S E K+L++L Sbjct: 118 GQVSATNKPLINESIAKDKEIIESQANEI------------------------KKLEELK 153 Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +I+ ++ + + K +L + G+ I +ID + PMFD S PE +L I Sbjct: 154 SEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANI 213 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++L I+I+GHTDA+P+ N NW LS RA +A + L+K+G+ E+++ + Sbjct: 214 AKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTV 273 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDR 341 +G++ L +P N NRRI I+V + Sbjct: 274 TGYSSTVLLDKKNPYNPENRRISIIVMKK 302 >gi|295699068|ref|YP_003606961.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295438281|gb|ADG17450.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 344 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 132/345 (38%), Gaps = 64/345 (18%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 S + + I+ + + + ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 RSRAAQVEAPAPVIVRRSRKGDEHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKYD 64 Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 K+ GI D N P S Sbjct: 65 KQ------------------GIEDYFNTPLSSLLGG------------------------ 82 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 + G+D+ + + ++ E PP + Sbjct: 83 -----------------NEGTAAARPSVVQGGGRDISDTRPGVGTKSQTEPT--PPRAAM 123 Query: 182 KILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + KRLQ L K+S+ + V + + T G+ I I+D +N PMF Sbjct: 124 PAVTPMDAKRLQQLKAKLSALIEQSSVLNAFKDQIRISITNEGLRIEIVDSQNRPMFASG 183 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQV 298 SS P + +L +IG L ISI GHTDA P+ NW LS +RA +A + Sbjct: 184 SSKLQPYAVTILTQIGAALNDVDNRISIAGHTDAVPYTAGPEGYSNWELSSERANAARRA 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ D++ ++ G A + NRRI ILV ++ Sbjct: 244 LVAGGMHGDKLLQMRGLADVLPLNSHVADEPTNRRISILVLNKAA 288 >gi|194364216|ref|YP_002026826.1| flagellar motor protein MotB [Stenotrophomonas maltophilia R551-3] gi|194347020|gb|ACF50143.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 59/333 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +I+++ ++ GSWK+ YADF+T +MAFFLV+W++ +T + AI +YF Sbjct: 3 ETKPTVIVRRVRKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + P S + D+ GS+N +Q + Sbjct: 63 R--------NPSPLVGSSATPAPGMAGPGGASTSMIKLGGATDISRGSSNDP--FQNQKE 112 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + QQ + K Sbjct: 113 AVPQPVDQQQ-----------------------------------------------RDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L+ L K++ +S A + +L + T G+ I I+D++N PMFD S+ P T Sbjct: 126 QQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ E L H IS+ GHTD + + NW LS DRA +A + L+ G+ + Sbjct: 186 QQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALIDGGLEDS 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +I+++ G + L +DP N NRRI I+V Sbjct: 246 KITRVVGLSSSVLFDKADPQNPINRRISIVVMT 278 >gi|310767897|gb|ADP12847.1| Chemotaxis protein [Erwinia sp. Ejp617] Length = 343 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 129/334 (38%), Gaps = 71/334 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N + I++ K+ + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K+ L+ + + +S + G + ++ + Sbjct: 62 FKTPL-----------------------KVALTGGQRSSDSSSPIPGGGRDPTEKIGEVH 98 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 K DL+K +K + L L + ++ Sbjct: 99 ------------------------------KVADLDKQKSKLDEIRLNRLRENLDQLIEA 128 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L ++ + G+ I IID +N PMF S+ Sbjct: 129 DPRLRALR----------------PHLIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYM 172 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L IS+ GHTD P+ NW LS DRA ++ + L+ G++ Sbjct: 173 RDILRAIAPILNQIPNRISLAGHTDDFPYPGGERGYSNWELSADRANASRRELVAGGLNS 232 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ ++ G + ++ NRRI +LV + Sbjct: 233 GKMLRVVGMSDTMKLKNRGANDAVNRRISLLVLN 266 >gi|91223190|ref|ZP_01258456.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01] gi|269967120|ref|ZP_06181187.1| chemotaxis LafU protein [Vibrio alginolyticus 40B] gi|91192003|gb|EAS78266.1| chemotaxis LafU protein [Vibrio alginolyticus 12G01] gi|269828257|gb|EEZ82524.1| chemotaxis LafU protein [Vibrio alginolyticus 40B] Length = 331 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 66/337 (19%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q+ + + + KV D ++ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKVYSHDESSHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAH 61 Query: 69 FNPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 LH---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------ 94 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 S+H N + KG D N Sbjct: 95 --------------SKHNSNHVVSSYFKGDGDGPEIDSLIPGN----------------- 123 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +++L LAK I + + A V T G+ I + D MF + + Sbjct: 124 FDTQEQLAALAKVIEQMTAQINAQG---NVNVTVTPQGLRIVLQDDYKQHMFSRGGAELT 180 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 P +L + V + I GHTDA PF R + NW LS RA A L++ G Sbjct: 181 PFFEDLLLALAPVFHRVNNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARNTLVEGG 240 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + +DR+ +++G + L +P +S NRRI++ V Sbjct: 241 MPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFVLT 277 >gi|254525153|ref|ZP_05137208.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14] gi|219722744|gb|EED41269.1| chemotaxis MotB protein [Stenotrophomonas sp. SKA14] Length = 320 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 142/334 (42%), Gaps = 59/334 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +I+++ ++ GSWK+ YADF+T +MAFFLV+W++ +T + AI +YF Sbjct: 3 ETKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + P S + D+ G++N +Q + Sbjct: 63 R--------NPSPLSGKSATPAPGMAGPGGASTSMIKLGGATDVSRGNSNDP--FQNQKE 112 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + QQ + K Sbjct: 113 AVPQPLDQQQ-----------------------------------------------RDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L+ L K++ +S A + +L + T G+ I I+D++N PMFD S+ P T Sbjct: 126 QQLEQLMKELQEAISKSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ E L H IS+ GHTD + + NW LS DRA +A + L+ G+ + Sbjct: 186 QQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALIDGGLEDS 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +I+++ G + L +DP N NRRI I+V + Sbjct: 246 KITRVVGLSSSVLFDKADPQNPINRRISIVVMTQ 279 >gi|119897740|ref|YP_932953.1| flagellar motor protein MotB [Azoarcus sp. BH72] gi|119670153|emb|CAL94066.1| flagellar motor protein MotB [Azoarcus sp. BH72] Length = 357 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 77/339 (22%), Positives = 145/339 (42%), Gaps = 51/339 (15%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + ++ Q I++K+ + ++ G+WKI YADF+T ++AFFL+MW++ +T + I Sbjct: 2 SDDSQQPIVVKR-IKKGGGGHHGGAWKIAYADFVTAMIAFFLLMWLLGSTAQGDLEGIAD 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K M + + I E +T++ +K G Sbjct: 61 YFQNPLKLAMDGGE---------GSGDSSSIIKGGGEDLTRSVGQVKRG----------- 100 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ KG+D + + + Sbjct: 101 --DVEGDRRINLDAAKGRQAPSADGKGRDEAE-------------------------SNR 133 Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL DL +I + + +L + G+ I ++D++N PMF+ +S+ P Sbjct: 134 ERSRLIDLKGRIEAIVEANPDLRQFKNQILMDIVNEGLRIQLVDEQNRPMFNSASADLRP 193 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGV 304 T +L+ IG L +S+ GHTD++ + R NW LS +RA ++ + L+ G+ Sbjct: 194 YTRDLLRAIGRALNDVGNSVSVSGHTDSAQYAGGERGFSNWELSSNRANASRRELVSGGL 253 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G A ++PM++ NRRI I+V ++Q Sbjct: 254 LAGKVVRVVGLADTIPLNRANPMDAVNRRISIIVLNKQA 292 >gi|134094523|ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas arsenicoxydans] gi|133738426|emb|CAL61471.1| Chemotaxis protein MotB (Motility protein B) [Herminiimonas arsenicoxydans] Length = 327 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 146/337 (43%), Gaps = 63/337 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 E + II+K+ + ++ G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 3 DEGLRPIIVKR-IKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGNLQ----- 56 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI D + P + + S D + + +++ Sbjct: 57 -------------GIADYFSTPLKVAMAGGSGSGDATSVIKGGGKDMTRIDGQQK----- 98 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 KG++L + L + E L + Sbjct: 99 ------------------------KGENLTPTKSLNLKDAEAE------------LERQE 122 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 RL+ L ++I + + + K +L + T G+ I I+D++N PMF S + P Sbjct: 123 MNRLKSLKERIEEAIDSIPSLRQYKNQLLLDITSEGLRIQIVDEKNRPMFALSKADLQPY 182 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 T ++L +I + L IS+ GHTDA+P+ + NW LS DRA ++ + L+ G+ Sbjct: 183 TKLILHEIAKTLNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGGME 242 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G + L DP+N NRRI I+V +++ Sbjct: 243 EAKMLRVVGLSSAVLFDQKDPLNPINRRISIIVMNKK 279 >gi|153831776|ref|ZP_01984443.1| lateral flagellar motor protein B [Vibrio harveyi HY01] gi|148872286|gb|EDL71103.1| lateral flagellar motor protein B [Vibrio harveyi HY01] Length = 330 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 S+H N + +G D N Sbjct: 94 -------------SKHNSNHVVSSFFQGDGDGPEIDSLIPGN-----------------F 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQG---NVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + + I GHTD++PF R + NW LS RA A L++ G+ Sbjct: 181 FFEDLLLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILT 276 >gi|259908189|ref|YP_002648545.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96] gi|224963811|emb|CAX55313.1| Chemotaxis protein [Erwinia pyrifoliae Ep1/96] gi|283478118|emb|CAY74034.1| Chemotaxis protein MotB (Motility protein B) [Erwinia pyrifoliae DSM 12163] Length = 343 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 129/334 (38%), Gaps = 71/334 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N + I++ K+ + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K+ L+ + + +S + G + ++ + Sbjct: 62 FKTPL-----------------------KVALTGGQRSSDSSSPIPGGGRDPTEKIGEVH 98 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 K DL+K +K + L L + ++ Sbjct: 99 ------------------------------KVADLDKQKSKLDEIRLNRLRENLDQLIEA 128 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L ++ + G+ I IID +N PMF S+ Sbjct: 129 DPRLRALR----------------PHLIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYM 172 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L IS+ GHTD P+ NW LS DRA ++ + L+ G++ Sbjct: 173 RDILRAIAPILNQIPNRISLAGHTDDFPYPGGERGYSNWELSADRANASRRELVAGGLNS 232 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ ++ G + ++ NRRI +LV + Sbjct: 233 GKMLRVVGMSDTMKLKNRGANDAVNRRISLLVLN 266 >gi|121611336|ref|YP_999143.1| OmpA/MotB domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121555976|gb|ABM60125.1| OmpA/MotB domain protein [Verminephrobacter eiseniae EF01-2] Length = 327 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 133/341 (39%), Gaps = 67/341 (19%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q II+++ V ++G+WKI YADF+T +MAFFL++W++ +T + I Y Sbjct: 10 EKKLQPIIVRR-VHRAAPAGHMGTWKIAYADFVTAMMAFFLLLWLLGSTAKGDLQEIAAY 68 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F M + G + + + E +TK + Q + Sbjct: 69 FAAPLGASMVGTDGA---------GRSSSVIPAGGEDLTKALGQSRRSGAQASGQRRI-- 117 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 L+ +++ + L + M Sbjct: 118 ---------------------------------GLDAEYARQDRQRIEALRAKFDALMAS 144 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL + +I T G+ I IID++N PMFD S+ LP Sbjct: 145 NPRLNEYRSQI----------------RIRITPDGLQIQIIDEQNRPMFDSGSARVLPHM 188 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR------NIARDNWRLSLDRAYSAYQVLMKS 302 +L IG L IS+ GHTDA P+ NW LS DRA ++ + L+ + Sbjct: 189 RDILHAIGAALGGVKNRISLAGHTDAVPYGKYGPHDEPGYSNWELSADRANASRRELVSA 248 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ +D++ ++ G A DP+ ANRRI I V + Sbjct: 249 GMPDDQLGRVVGLAASDPLAPDDPLAPANRRISITVLTHEA 289 >gi|90577360|ref|ZP_01233171.1| chemotaxis LafU protein [Vibrio angustum S14] gi|90440446|gb|EAS65626.1| chemotaxis LafU protein [Vibrio angustum S14] Length = 332 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 126/333 (37%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N + I+ K+ + G+WK+ +ADFM LMA FLV+W++ D +KAI Y Sbjct: 2 QNTEQIVFKRAAKRHSHQQHGGAWKVAFADFMIALMALFLVLWLMQVVDQKERKAIVAYV 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N S +FDE G+ N L Sbjct: 62 N---------SASVFDE-----------------------------GAGNPFDTANSLSP 83 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 F + S H + G +D +P + + + Sbjct: 84 IDFGGEAADLSSHNAAMTIKSFFDGNGDGPESD----------ALIPG-------SFETQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LA + T + A + + T G+ I + D MF + S+ P Sbjct: 127 EQLAILASVVEETAKQVSAQG---NISVDVTPQGLRIILQDDFKQNMFHRGSANLTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 VL I + + + I GHTDA+PF+ R NW LS RA A Q L+ G+ + Sbjct: 184 DVLLSIAPIFKQISNSLIISGHTDATPFKRQFSNRSNWELSSSRANVARQTLIAGGMPSN 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++ A L P S NRRI++ + Sbjct: 244 RVLQVAAMAERALLNKQSPNASENRRIELFILT 276 >gi|156976178|ref|YP_001447084.1| flagellar motor protein [Vibrio harveyi ATCC BAA-1116] gi|156527772|gb|ABU72857.1| hypothetical protein VIBHAR_04949 [Vibrio harveyi ATCC BAA-1116] Length = 330 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 S+H N + +G D N Sbjct: 94 -------------SKHNSNHVVSSFFQGDGDGPEIDSLIPGN-----------------F 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQG---NVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + + I GHTD++PF R + NW LS RA A L++ G+ Sbjct: 181 FFEDLLLALAPVFERISNPLFISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILT 276 >gi|269960142|ref|ZP_06174518.1| chemotaxis LafU protein [Vibrio harveyi 1DA3] gi|269835113|gb|EEZ89196.1| chemotaxis LafU protein [Vibrio harveyi 1DA3] Length = 330 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHNHDEFHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVP------------------- 93 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 S+H N + +G D N Sbjct: 94 -------------SKHNSNHVVSSFFQGDGDGPEIDSLIPGN-----------------F 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A V T G+ I + D MF + + P Sbjct: 124 DTQEQLALLAKVIDEVVGQISAQG---NVNVTITPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + + I GHTD++PF R + NW LS RA A L++ G+ Sbjct: 181 FFEDLLLALAPVFERISNPLIISGHTDSTPFKKRFGRQSNWALSASRADVARNTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNPEEPDSSENRRIELFILT 276 >gi|157147077|ref|YP_001454396.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895] gi|157084282|gb|ABV13960.1| hypothetical protein CKO_02854 [Citrobacter koseri ATCC BAA-895] Length = 315 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 138/335 (41%), Gaps = 52/335 (15%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 +N+ + IIK+ + G+WK+ +ADF +MA F+V+WI+ A ++ +K I Sbjct: 2 RNRSKEHTTIIKRSSRKSHDEFHGGAWKVAFADFTLAMMALFMVLWIMGAVTEEERKEIV 61 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 N ++ E +S I + + +D R Sbjct: 62 SMLN---------------GESVFEGNSLTPITQKEGQGGQLSLID------------SR 94 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 ++ S+ ++ + +++ K D+ Sbjct: 95 HPKTPKPSKTAESSKPLTDAEKQVAQQAKQTESLDDVNA--------------------- 133 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + + ++DLA+ I S A +K E G+ I + D + MF +SS+I P Sbjct: 134 RSRNEIEDLARIIMKITSTYDAQANLK---MEIVPQGLRILVSDDQKREMFQRSSAILTP 190 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305 +L + L I I GHTDA+ FR+ + +NW LS +RA A VL G+ Sbjct: 191 FFKRLLTEFAPELNKIDNKIIITGHTDATRFRDQVLYNNWNLSGERAMQARAVLTTGGLD 250 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + +I ++SG A L P++SANRRI+I+V Sbjct: 251 QSKILQVSGMADQMLLDPQHPLSSANRRIEIMVLT 285 >gi|54307286|ref|YP_128306.1| chemotaxis LafU protein [Photobacterium profundum SS9] gi|46911706|emb|CAG18504.1| Hypothetical chemotaxis LafU protein [Photobacterium profundum SS9] Length = 330 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 127/334 (38%), Gaps = 47/334 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + II+KK+ ++ G+WK+ +ADF +MAFF+V+W++ T + + IEQ Sbjct: 3 KEPHIIIVKKRARRHHDEHHGGAWKVAFADFAIAMMAFFMVLWLMGITTQEERIEIEQRL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + IF+ N P ID + +N ++ Sbjct: 63 QT-----ASIFDNIFEITNSPH-----PIDFDGNASPFENPINSST-------------- 98 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +S++ +D + + +K P L+ Sbjct: 99 --------------------NSKRKRDTSVAQQTPQGDDKASAGRGPKLNSMLAGKHLST 138 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L LAK + L A N ++ E G+ I I D + MF + P Sbjct: 139 AQLTILAKGLKEMAEALSASN---NIVLEIVPQGLRILIQDDDDHFMFQRGGIEMTPFFE 195 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + VL + I GHTD+ PF NW LS RA A QVL+ SG+ I Sbjct: 196 DMLYNLAPVLGQIKNRMVISGHTDSIPFHRRDYSNWDLSGSRALKARQVLVDSGLPVANI 255 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ A P + NRRI+++V + Sbjct: 256 LQVAAMAARMPVNKQYPKSGKNRRIEMMVLTKNA 289 >gi|54295159|ref|YP_127574.1| flagellar motor protein MotB [Legionella pneumophila str. Lens] gi|53754991|emb|CAH16479.1| hypothetical protein lpl2239 [Legionella pneumophila str. Lens] Length = 312 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 144/329 (43%), Gaps = 63/329 (19%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 I +K+ +D + GSWKI +ADF+T +MAFFL+MW++ + + K I +YF K Sbjct: 33 IIRKIKKNDHKYHGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKRPMKVA 92 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + + + + + N D ++ Sbjct: 93 LFGGESMGNRKATIKGGGPNIED-----------------------------------TD 117 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q S K + K K++ +S E K+L++L Sbjct: 118 GQVSATNKPLINESIAKDKEIIESQANEI------------------------KKLEELK 153 Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +I+ ++ + + K +L + G+ I +ID + PMFD S PE +L I Sbjct: 154 SEINLSMEKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANI 213 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++L I+I+GHTDA+P+ N NW LS RA +A + L+K+G+ E+++ + Sbjct: 214 AKLLNSVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTV 273 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDR 341 +G++ L +P N NRRI I+V + Sbjct: 274 TGYSSTVLLDKKNPYNPENRRISIIVMKK 302 >gi|160896052|ref|YP_001561634.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1] gi|160361636|gb|ABX33249.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1] Length = 345 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 62/338 (18%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q IIIK+ P+ G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 3 EKKLQPIIIKRVKKTAHAPH-GGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQ----- 56 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI + P + + D G+ N Sbjct: 57 -------------GIAAYFSSPLKVAMAGGD----------------GAGNSSSVIPGGG 87 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N++ + + +S R + ++ Sbjct: 88 NDLAKVHGQVRRSEAADSSNRRTSVDAGRADQAQVDS----------------------- 124 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R++ L K+ + + S + + + T G+ I I+D++N PMFD S++ P Sbjct: 125 -NRIKALKAKVDAMITSNARLNEFRSQIRTDVTPDGLQIQIVDEQNRPMFDSGSAMVKPY 183 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L+++G LA + IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ Sbjct: 184 MRDILREVGAALAGAENRISLSGHTDAAPYGNADRGYSNWELSSDRANASRRELVAAGMP 243 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++I+G A L + DP NRRI I V ++ Sbjct: 244 LNQLARITGLASSDLLLPDDPRAPQNRRITITVLTQEA 281 >gi|238026965|ref|YP_002911196.1| OmpA/MotB [Burkholderia glumae BGR1] gi|237876159|gb|ACR28492.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 312 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 122/332 (36%), Gaps = 64/332 (19%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 II+++ ++ G+WKI YADF+T +MAFFL+MW++ +T ++ Sbjct: 18 TIIVRRVKRDAHEGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKYERQ---------- 67 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 GI N P + Sbjct: 68 --------GIESYFNTPLSALLG------------------------------------- 82 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 ++ S ++S+ + + +PP S K++L Sbjct: 83 -GSADGSGTARSSVINGGGHDLSDTHGGNGNATQQAAPARSVPPDSANDARLALLKQQLT 141 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + + TTR G+ I I+D R+ PMF SS +L Sbjct: 142 ALVDE------NPKLKAFKNQIRLSTTREGLRIEIVDSRSRPMFATGSSRLEDYAYDILF 195 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +IG VL +S+ GHTDA P+ NW LS +RA +A + L+ + ED++ + Sbjct: 196 QIGGVLNQVDNRVSLAGHTDAVPYSGGIAGYSNWELSSERANAARRALVAGHLREDKLLQ 255 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + G A NRRI ILV +++ Sbjct: 256 VRGLADVLPFDRGVADAEVNRRISILVLNKEA 287 >gi|292488570|ref|YP_003531454.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430] gi|292899741|ref|YP_003539110.1| chemotaxis protein [Erwinia amylovora ATCC 49946] gi|291199589|emb|CBJ46706.1| chemotaxis protein [Erwinia amylovora ATCC 49946] gi|291554001|emb|CBA21046.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora CFBP1430] gi|312172716|emb|CBX80972.1| Chemotaxis protein MotB (Motility protein B) [Erwinia amylovora ATCC BAA-2158] Length = 343 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 129/334 (38%), Gaps = 71/334 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N + I++ K+ + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNGRPIVLVKRKKSHKHVGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K+ L+ + + +S + G + ++ + Sbjct: 62 FKTPL-----------------------KVALTGGQRSSDSSSPIPGGGLDPTEKIGEVH 98 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 K DL+K +K + L L + ++ Sbjct: 99 ------------------------------KVADLDKQKSKLDEIRLNRLRENLDQLIEA 128 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L ++ + G+ I IID +N PMF S+ Sbjct: 129 DPRLRALR----------------PHLIINMVQEGLRIQIIDSQNRPMFKTGSAEVESYM 172 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L +S+ GHTD P+ NW LS +RA ++ + L+ G++ Sbjct: 173 RDILRAIAPILNQIPNRLSLAGHTDDFPYAGGERGYSNWELSANRANASRRELVAGGLNS 232 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ ++ G + ++ NRRI +LV + Sbjct: 233 GKMLRVVGMSDTMKLKNRGANDAVNRRISLLVLN 266 >gi|186473029|ref|YP_001860371.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184195361|gb|ACC73325.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 327 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 136/346 (39%), Gaps = 65/346 (18%) Query: 2 NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 G++ +I+++ K ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 RPRGEEASAKAAPVIVRRSKKGDGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKY 64 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 K+ IE YFN +L+ ++G + Sbjct: 65 DKQGIEDYFNTPLSSLLGGNEGTAAAR-----------------------------PNVI 95 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + + + + + Q E K +LT+ + D Sbjct: 96 QGGGRDISDTRPGDGKTMQQEPAKPTLTQITTVPNDTA---------------------- 133 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 RL+ L K+S+ + A + T G+ I I+D PMF Sbjct: 134 ----------RLEQLKSKLSALIEDTPALKAFKDQIRISITNEGLRIEIVDTLKRPMFAT 183 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQ 297 SS + +L +IG L ISI GHTDA + N NW LS +RA +A + Sbjct: 184 GSSKLQSYAVEILTRIGAALNDVDNRISIAGHTDAVTYANGPAGYSNWELSSERANAARR 243 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ ED++ ++ G A A+ NRRI +LV ++ Sbjct: 244 ALVAGGMREDKLLQVRGLADVLPLNANVADEPTNRRISVLVLNKAA 289 >gi|302877353|ref|YP_003845917.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580142|gb|ADL54153.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 295 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 59/315 (18%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 G+WKI YADF+T LMAFFL++W+I++T D ++AI +YF + + Q+ Sbjct: 29 GAWKIAYADFVTALMAFFLMLWLISSTSADYRQAISEYFETPLMVVFSGG------QSND 82 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 SS D+ + V+ G+ + ++ Sbjct: 83 VTSSLIVGSYGEDKTFSSGQVNKGEGAVEDIAISVSDAGRLLHM---------------- 126 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 +E + K +L+ L + + + Sbjct: 127 -----------------------------QEVVRLKLLKAQLEQLIR------TDPNLNQ 151 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + + T G+ I IID +N PMF+ S+I P T+ +L+ IG L I + G Sbjct: 152 FKEQLQIDLTSEGLRIMIIDAKNRPMFEIGSAILQPYTVEILRSIGSTLNRVPNKIGLSG 211 Query: 271 HTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTDA+ ++ + NW LS DRA ++ + L+ G+ +++I ++ G + L +DP + Sbjct: 212 HTDAANYQGGSAGYSNWDLSADRANASRRTLIAGGMGQEKILRVVGLSDSVLFNPADPYD 271 Query: 329 SANRRIDILVEDRQG 343 + NRRI I+V +++ Sbjct: 272 AHNRRISIIVMNQKA 286 >gi|78063638|ref|YP_373546.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77971523|gb|ABB12902.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 318 Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 66/342 (19%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 S K +++++K D ++ G+WKI YADF+T +MAFFL+MW++ + Sbjct: 5 RSTPSKQSVAASLVVVRRKKGEDHDAHHGGAWKIAYADFVTAMMAFFLLMWLLGSVSKYD 64 Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 K+ GI D N P + Sbjct: 65 KQ------------------GIEDYFNTPLST---------------------------- 78 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 LS Q ++ + S+ + G+D+ T + + +P S Sbjct: 79 -----------LLSGGQDAQAPRPSVVQGG--GRDMSDPTPAIDT----KAQPVPASSPA 121 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + ++L+ L K+++ ++ + + T G+ I I+D PMF Sbjct: 122 ALAGIVDTQKLERLKAKLTAAIAQSPSLRAYQDQIRIAITNEGLRIEIVDSLKRPMFASG 181 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298 SS P +L +IG L +SI GHTD++P+ + NW LS DRA +A + Sbjct: 182 SSQPESYATAILSQIGTALDDVENRVSIAGHTDSTPYPDGSTGYSNWELSSDRANAARRA 241 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 L+ G+ ED++ ++ G A + NRRI ILV + Sbjct: 242 LVAGGLREDKLLQVRGLADVLPLDKNVADEPTNRRISILVMN 283 >gi|330447921|ref|ZP_08311569.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492112|dbj|GAA06066.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 332 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 124/333 (37%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + I+ K+ ++ G+WK+ +ADFM LMA FLV+W++ D +KAI Y Sbjct: 2 QKTEHIVFKRAAKRHSNEHHGGAWKVAFADFMIALMALFLVLWLMQVVDQQERKAIVAYV 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N S +FDE G+ N L Sbjct: 62 N---------SASVFDE-----------------------------GAGNPFDTANSLSP 83 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 F + S H + G D +P + + + Sbjct: 84 IDFGGEAADLSSHNAAMTIKSFFDGNGDGPERD----------ALIPG-------SFETQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L LA + T + A + + T G+ I + D MF + S+ P Sbjct: 127 AQLAVLASVVEETAKQVSAQG---NISVDVTPQGLRIILQDDFKQNMFHRGSANLTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL I + + + I GHTDA+ F++ NW LS RA A Q L+ G+ + Sbjct: 184 DVLLNIAPIFKQISNSLIISGHTDATQFKSKFSRSTNWELSSSRANVARQTLIAGGMPSN 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G A L P S NRRI++ + Sbjct: 244 RVLQVAGMAERALLNKQSPDASENRRIELFILT 276 >gi|254463728|ref|ZP_05077139.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206684636|gb|EDZ45118.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 282 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 58/332 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIK+K ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 8 QSNVAPIIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 67 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P + G N + Q Q Sbjct: 68 FSPSIPLSRVSGGG--------------------------NGAFQGDSMFTEDIQPQSGT 101 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 Q + ++ +D K +E+ ++ Sbjct: 102 GATDINPMDAQKAQGDTGVESTEKREEDDSKFRAIEEQLSGRGG---------------- 145 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +V+ + + ++ T G++I + + P+F++ + P P Sbjct: 146 ---------------ESMVSVAMARHIVTRVTDEGLIIELFATEDMPLFEEDQAEPKPLF 190 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +++ I V T ++I GH + P W LS RA +L G+ R Sbjct: 191 RDLVRMIARVSDGVTSNVAIGGHIRSHPVVLAKNPVWELSHARADITRTLLESGGLDAGR 250 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + +++G A +L + +PM + N RI+I+ Sbjct: 251 VHRVTGHADRKLAVG-NPMAARNDRIEIIFLR 281 >gi|283834436|ref|ZP_06354177.1| MbhA protein [Citrobacter youngae ATCC 29220] gi|291069983|gb|EFE08092.1| MbhA protein [Citrobacter youngae ATCC 29220] Length = 332 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 137/343 (39%), Gaps = 52/343 (15%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M ++ + II++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKGPNRRDRGAKTTIIRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKA 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I + Q+ ++ + I Sbjct: 61 DRENIVAALH---------------GQSIFNGGGMAPLNKLGKQPIAPG----------- 94 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++ N + N Q++ + L K Sbjct: 95 AQKKNVTRNKLDKTVNPQETARIT-----------------------EENAKKALDVNEK 131 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 +L K + L +LA I+ ++ + E G+ + I D +N MF++ Sbjct: 132 TALLKQKSAQELGELATDINVIARKA---HMETNLEMEIVPQGLRVLIKDDQNRNMFERG 188 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S+ +P +L ++ V I I GHTDA +++ +NW LS DRA SA +VL Sbjct: 189 SAKIMPFFKSLLVELAPVFDSLDNKIIITGHTDAMSYKSNIYNNWNLSGDRALSARRVLE 248 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +G+ +D++ ++S A L A +P ++ NRRI+I+V + Sbjct: 249 DAGMPQDKVMQVSAMADQMLLDAKNPESAGNRRIEIMVLTQSA 291 >gi|120597323|ref|YP_961897.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|120557416|gb|ABM23343.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] Length = 305 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 62/331 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY Sbjct: 3 HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 G T F+ S + IDL + I + Sbjct: 63 R--GDMNPTGPINPFELS-----QSSSIIDLEGNMSIAPTIIPSH--------------- 100 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + EE +P + Sbjct: 101 ------------------------------PSPRAGAEGIEEGALIPG-------QFDTQ 123 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LA++++ + + ++ + + GI I I D N MF + S+ P Sbjct: 124 EQLTVLARQLNRVVQ---SSSMAENITVTIVPQGIRILIHDNVNRFMFTRGSAQMQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L +G +L + T + I GHTD++P+ NW LS +RA A +VL + GV D++ Sbjct: 181 ELLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQV 240 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A I SD +ANRRI+ L+ Sbjct: 241 IQVTGMADQVPYITSDTAAAANRRIEALILT 271 >gi|260767946|ref|ZP_05876880.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] gi|260615976|gb|EEX41161.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] Length = 330 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 129/333 (38%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ D P++ G+WK+ ADFM LMA FLV+W++ + + +KAI + Sbjct: 2 QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S +FD RS N D S Q + Sbjct: 62 H---------SASVFD------RSYGNPFDTS-----------------------QSISP 83 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +S S+H N G +D N + Sbjct: 84 IDLASESSVPSKHDANHTVTSFYNGNGNGPESDAIIPGN-----------------FDTQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK I + + + A V T G+ I + D MF + + P Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V + I GHTD++ F+ R NW LS +RA A Q L+ G+ E Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKRRFSHRTNWELSANRANIARQTLVAGGMPEQ 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L +P S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFVLT 276 >gi|197105150|ref|YP_002130527.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1] gi|196478570|gb|ACG78098.1| chemotaxis MotB protein [Phenylobacterium zucineum HLK1] Length = 301 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 45/331 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 DQ I+IKK ++ G+WK+ YADF+T +MAFFL+MW+IN T + K+ I YF Sbjct: 4 GDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLLMWLINTTSPEQKQGIADYFA 63 Query: 71 PFGKNLMTASKG-IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + ++ G I S++ I E + +S + G + LE Sbjct: 64 PASVSQTSSGAGGILGGTALGTDGSKSAGASPIIEELAPDSRNPNDGKNRDASKSDSLE- 122 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L ++ K E ++ +++ Sbjct: 123 ---------------------------AASTQALRDALQKREEAAFASAAQSLRQSLQDM 155 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L +L+K ++ + T G+ I ++DQ MF+ SS P Sbjct: 156 PELAELSK----------------NIIIDQTPEGLRIQLVDQEGRSMFNAGSSQPNDRAK 199 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++L+ + +V+ +SI GHT A+ + A +W LS RA ++ ++L SGV DR+ Sbjct: 200 LLLRAVSKVINQLPNRVSIYGHTSANANGSRAESDWPLSAARADASRRILQGSGVDPDRV 259 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++SG A DP + NRRI I++ Sbjct: 260 YQVSGKAASEPLYPDDPTLAGNRRIAIVLLR 290 >gi|315179650|gb|ADT86564.1| lateral flagellar motor protein B [Vibrio furnissii NCTC 11218] Length = 330 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ D P++ G+WK+ ADFM LMA FLV+W++ + + +KAI + Sbjct: 2 QKQEHVVFKRSTRSHDEPHHGGAWKVAMADFMIALMALFLVLWVMQVVNKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S +FD RS N D S Q + Sbjct: 62 H---------SASVFD------RSYGNPFDTS-----------------------QSISP 83 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +S S+H N G +D N + Sbjct: 84 IDLASESSVPSKHDANHTVTSFYNGNGNGPESDAIIPGN-----------------FDTQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK I + + + A V T G+ I + D MF + + P Sbjct: 127 EQLTILAKVIEAMMRQISAQG---NVHVSVTPQGLRIVLQDDYKQHMFSRGGTELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V + I GHTD++ F R R NW LS +RA A Q L+ G+ E Sbjct: 184 DLLLALAPVFQRVENPLIISGHTDSTAFKQRFSHRTNWELSANRANIARQTLVAGGMPEQ 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L +P S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNPDEPDGSENRRIELFVLT 276 >gi|73539429|ref|YP_299796.1| flagellar motor protein MotB [Ralstonia eutropha JMP134] gi|72122766|gb|AAZ64952.1| OmpA/MotB [Ralstonia eutropha JMP134] Length = 325 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 68/339 (20%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + ND II ++ P+ SWKI YADFMT +MA FLV+W++++ + T Sbjct: 2 SSANDMRPIIVRRAKSHAKPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTL----- 56 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 +GI + P K+ + E ++ + G + ++ + Sbjct: 57 -------------EGIAEYFRMPL-----KVAVVGGERSSQTPSVIPGGGMDVMRKDGEV 98 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 +++Q + + Sbjct: 99 MRAHDNDPSAEQ------------------------------------------RRNEFQ 116 Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +RL+ L ++ + +L + T G+ I I+D +N PMF + P Sbjct: 117 EAQRLRALKNRLEQIIENNPMLKQFRPQLLLDITSEGLRIQILDTQNRPMFRTGRAEVEP 176 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV 304 +L++IG V+ +S+ GHTD++ + N NW LS DRA ++ + L+ G+ Sbjct: 177 YMRAILREIGPVINDLPNKVSLSGHTDSANYSNGERTYSNWELSSDRANASRRELIAGGM 236 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E ++ ++ G A SD + NRRI I+V +++ Sbjct: 237 QEGKVLRVLGLAATMPLDKSDLLAPVNRRISIVVLNQKA 275 >gi|146294532|ref|YP_001184956.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|145566222|gb|ABP77157.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 305 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 124/331 (37%), Gaps = 62/331 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY Sbjct: 3 HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + Sbjct: 63 ----------------------------------------------------RGDMNPTG 70 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 I SQ S + + EE +P + Sbjct: 71 PINPFELSQSSSIIDLEGNMSIAPAIIPSHPSPRAGAEGIEEGALIPG-------QFDTQ 123 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LA++++ + + ++ + + GI I I D N MF + S+ P Sbjct: 124 EQLTVLARQLNRVVQ---SSSMAENITVTIVPQGIRILIHDNVNRFMFTRGSAQMQPYFE 180 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L +G +L + T + I GHTD++P+ NW LS +RA A +VL + GV D++ Sbjct: 181 ELLLSLGPILKNITNSMVISGHTDSTPYAGSLFTNWELSSERALLARRVLERGGVKRDQV 240 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A I SD +ANRRI+ L+ Sbjct: 241 IQVTGMADQVPYITSDTAAAANRRIEALILT 271 >gi|163800113|ref|ZP_02194014.1| chemotaxis LafU protein [Vibrio sp. AND4] gi|159175556|gb|EDP60350.1| chemotaxis LafU protein [Vibrio sp. AND4] Length = 330 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 66/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A D ++ G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHDHDESHGGAWKVAFADFMIALMALFLVLWVMQVVDKEDRKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + G ++ Sbjct: 93 --------PSQHNSNHVVSSFFQGDGDGPEMDSLIPGN---------------------F 123 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++L LAK I + + A + V T G+ I + D MF++ + P Sbjct: 124 DTQEQLALLAKVIDKVVGQISAQD---NVNVTITPQGLRIVLQDDYMQHMFNRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 +L + V + I GHTD++PF R + NW LS RA A L++ G+ Sbjct: 181 FFEDLLLALAPVFERINNPLIISGHTDSTPFKQRVGRKSNWALSASRADVARNTLVEGGM 240 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +DR+ +++G + L +P +S NRRI++ + Sbjct: 241 PDDRVMQVTGMSDRALLNREEPDSSENRRIELFILT 276 >gi|264676590|ref|YP_003276496.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|262207102|gb|ACY31200.1| OmpA/MotB [Comamonas testosteroni CNB-2] Length = 355 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 62/334 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ ++ G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 7 QPIIIKRVKKTAH-AHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQ--------- 56 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 GI N P K+ +S +S + G + K + ++ + Sbjct: 57 ---------GIAAYFNSPL-----KVAMSGGSGAGNSSSIVPGGGNDLSKVHGQVRRSES 102 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + +++S + + +RL Sbjct: 103 EDNANRRSSQAMGRADESA-----------------------------------RDAQRL 127 Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L K+ S ++ + + E T G++I I+D +N PMFD S++ P + Sbjct: 128 HALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYMRDI 187 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG + ++ IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ D++ Sbjct: 188 LREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPLDKL 247 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ G A L + +P + NRRI I V ++ Sbjct: 248 ARVVGMASSDLLLPEEPRAAQNRRITITVLTKEA 281 >gi|126738556|ref|ZP_01754261.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6] gi|126720355|gb|EBA17061.1| chemotaxis protein MotB [Roseobacter sp. SK209-2-6] Length = 278 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 59/334 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIKKK ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Y Sbjct: 4 QSNMAPIIIKKKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P + G Q D Q + Sbjct: 64 FSPSIPLSRVSGGGNGAFQG-----------------------DSMFTEDIQPQSGTGAT 100 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + Q E + S+K ++ K +E+ + Sbjct: 101 DMNPMDAQQAQGETGVSD----SQKAEEDSKLRAIEEQLQGRGG---------------- 140 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +V+ + + ++ + G++I + + +F+ ++ P P Sbjct: 141 ---------------ESMVSIEMARHIITRISDEGLIIELFETETAKLFEDGTAEPTPLF 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +++ + V A +++ GH + P W +S RA +A +L G+ +R Sbjct: 186 RDLVRMVSRVSATVANEVAVSGHIQSQPVVIAQNPVWGVSHQRADAARTLLESGGMKANR 245 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 I +++G+A +L A +PM+ N R++I++ Q Sbjct: 246 IQRVTGYADRKL-AAQNPMSPRNNRVEIILLREQ 278 >gi|163793054|ref|ZP_02187030.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159181700|gb|EDP66212.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 373 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 31/332 (9%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N I+IKK ++ G+WK+ YADF+T +MAFFL++W++NAT ++ K I YF Sbjct: 2 DNHATIVIKKVKKGGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLNATTEEQKMGISNYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +P + T++ +G T+ Sbjct: 62 DPTAIS-----------------------------RSTRSGSGGLLGGTSITVPGALKTP 92 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + ++ Q + T + D ++ + ++E + E+++ + + Sbjct: 93 SSPPQISTPQVARPQAERTESLDPDSDDPENIESRLGSREDEEGTVNQEVVEQLMREREQ 152 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ +D I + ++ + + ++T G+ I +IDQ +F S+ +T Sbjct: 153 QQFEDAEAAIKEAIEKSPELSDVAESIKVDSTPEGLRIQLIDQERIALFPNGSASMYEQT 212 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L K+ EV+A I I GHTD+ F NW LS DRA ++ +V++ +G+ E Sbjct: 213 RKLLIKVAEVVAALPNKIEITGHTDSKQFHPGSTYTNWDLSSDRANASRRVMVANGIDEK 272 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RI ++ G A + DP + NRRI I+++ Sbjct: 273 RIDEVVGKADRDPLVVEDPSDPTNRRISIILK 304 >gi|84622281|ref|YP_449653.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366221|dbj|BAE67379.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 385 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + P S + D+ G QK + R + Sbjct: 63 R--------NPSPLSGKSMAPSPGMNGPGGASTSMIKLGGTADMAKG---QKDEMGRKRD 111 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N + +S K K Sbjct: 112 NAADTTEDSRS----------------------------------------------KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L +++ + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLETLMQELKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L ++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VEILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|325923665|ref|ZP_08185290.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] gi|325545864|gb|EGD17093.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] Length = 404 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E ++I++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVVIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP S ++ + Sbjct: 63 R-----------------NPSPLSGKSP-----------------------------APS 76 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + K T D KG+ + + + E+ K K Sbjct: 77 PGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTTEDSR-----------AKDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+++ Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMADA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L ++P N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281 >gi|91794978|ref|YP_564629.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91716980|gb|ABE56906.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 330 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 133/331 (40%), Gaps = 44/331 (13%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ IIIK+ + ++ G+WK+ +ADF +MA F+V+WI+ D D + I QY Sbjct: 3 HKNEPIIIKRGRRSKRSASHGGAWKVAFADFTLAMMALFMVLWIMQIADQDERSQIVQYL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 G+ + + FD S + ID I Sbjct: 63 R--GEMYASGAMNPFDV-----AQSSSIIDFEGSPAI----------------------Q 93 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S E ++ + G++ + E N +P + Sbjct: 94 QAIITSAGSGPERAGPAMHNNIPAGEE-----EPNAGQGPEFNAMVPG-------QYDTQ 141 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L LA++++ + ++ + GI I I D + MF + S+ Sbjct: 142 AQLVMLARQLNHVVQQ---SSMADNIAVTLVPQGIRILIHDNIDRFMFTRGSAQMQVYFE 198 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L +G VL T + I GHTD++P+ NW LS RA A +VL GV +++ Sbjct: 199 DLLLALGPVLGQVTNAMVISGHTDSTPYVGTEFTNWELSSKRALLARRVLEFGGVKRNQV 258 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A I +P +ANRRI++L+ Sbjct: 259 IQVTGMADQVAYIPQEPAAAANRRIEVLILT 289 >gi|262173363|ref|ZP_06041040.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] gi|261890721|gb|EEY36708.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] Length = 315 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ + G+WKI ADFM LMA FLV+W++ + D +KAI + Sbjct: 2 QRQERVVFKRAKGYIYDEHYSGAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N + FD N S + IDL+ D + Sbjct: 62 NSSNV-FDESYGNPFDTSN-----SISPIDLASDSSV----------------------- 92 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S H +S + G + D + + Sbjct: 93 -----PSRHNSNHVVSSFFQGDGDGPESNSLIDGN---------------------FETQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK + + + A V T G+ I + D MF + S P Sbjct: 127 EQLTLLAKVVKKVIGQVSAQG---NVNVTVTPQGLRIVLQDDYKQFMFSRGGSELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V I I GHTD+ PFR NW LS RA A + L+ G+ + Sbjct: 184 DLLLALAPVFQRVANPIIISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAE 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L + P +S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNQTAPDSSENRRIELFVLT 276 >gi|58038613|ref|YP_190577.1| chemotaxis MotB protein [Gluconobacter oxydans 621H] gi|58001027|gb|AAW59921.1| Chemotaxis MotB protein [Gluconobacter oxydans 621H] Length = 311 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 143/334 (42%), Gaps = 30/334 (8%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 ++N + + IIIK+ + + ++ G+WKI YADF+T +MAFFLVMW+INAT +D +K Sbjct: 2 SNQNGKEARKIIIKR-FDVVEGGHHGGAWKIAYADFVTAMMAFFLVMWLINATTEDQRKG 60 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 I +FNP + PP + TK V LK G K Sbjct: 61 IANFFNPMAV----------WKDMPPPVDNVLPAAPEPVSLETK-PVALKPGKDQYGKAP 109 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 Q + + S H + + + S K E +++ Sbjct: 110 QGAAGSQQGKDQTAPSVHTAQIV--VLHDSQIQPGEPPVTPSAQKAEQEARAEAAQKIQA 167 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + L D+ ++S G+ + I D + PMF S P Sbjct: 168 LISNTPELADVRSQVS----------------VTVGDDGLHVQIADSDHQPMFAMGQSSP 211 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P + +++ I L +SI G+TDA+P+R NW LS RA + ++++SG Sbjct: 212 NPHAVQLIKAIVPYLEKLHGKLSIAGYTDAAPYRPGQLSNWSLSSARAVAVRDLVVQSGF 271 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + R+ +SG+A L + P+N NRRI +++ Sbjct: 272 PDRRLKSVSGYADRNLFDPTQPLNPRNRRIVLVL 305 >gi|327398736|ref|YP_004339605.1| OmpA/MotB domain-containing protein [Hippea maritima DSM 10411] gi|327181365|gb|AEA33546.1| OmpA/MotB domain protein [Hippea maritima DSM 10411] Length = 287 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 86/332 (25%), Positives = 135/332 (40%), Gaps = 50/332 (15%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +EN + I+KK +W++ Y DFMT +MAFFLVMW+I AT+ +K + Y Sbjct: 3 EENQEGGIVKKCKKCKCEEGGGSAWEVAYGDFMTSMMAFFLVMWLIAATNVKQRKVLSTY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F G +T + + + S++ L++ + I + + Sbjct: 63 FTQPGATSLTEGSSMLPSKGVFDIGSRS---LTVSQRIPEMPLP---------------- 103 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + KG+ L + S I K+ Sbjct: 104 ----------------SVQPQKTLKGRGLIPK--------------VLRKSGGGIGQSKQ 133 Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L ++ KKI ++ + E T G+ I I D+ PMF S P Sbjct: 134 TMNLYNIMKKIQQVIASKKELLQYRNQIKMEITEEGLRIVIFDKNKRPMFYPGSDKLEPW 193 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL + + LA + I+I GHTDA+P+ NW LS RA +A + + +GVS Sbjct: 194 AKEVLDIVAKQLADISNKITIEGHTDANPYVIGGLSNWDLSTMRANAARREIQTNGVSVS 253 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVE 339 R I G+ R +DP + NRRI ILV+ Sbjct: 254 RFDSIVGYGDTRPVPGTDPKDPINRRIVILVK 285 >gi|58580310|ref|YP_199326.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578754|ref|YP_001915683.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424904|gb|AAW73941.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523206|gb|ACD61151.1| chemotaxis MotB protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 377 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + P S + D+ G QK + R + Sbjct: 63 R--------NPSPLSGKSMAPSPGMNGPGGASTSMIKLGGTADMAKG---QKDEMGRKRD 111 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N + +S K K Sbjct: 112 NAADTTEDSRS----------------------------------------------KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L +++ + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLETLMQELKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L ++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|299531265|ref|ZP_07044675.1| OmpA/MotB [Comamonas testosteroni S44] gi|298720672|gb|EFI61619.1| OmpA/MotB [Comamonas testosteroni S44] Length = 355 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 62/334 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ ++ G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 7 QPIIIKRVKKTAH-AHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQ--------- 56 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 GI N P K+ +S +S + G + K + ++ + Sbjct: 57 ---------GIAAYFNSPL-----KVAMSGGSGAGNSSSIVPGGGNDLSKVHGQVRRSES 102 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + +++S + + +RL Sbjct: 103 EDNANRRSSQAMGRADESA-----------------------------------RDAQRL 127 Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L K+ S ++ + + E T G++I I+D +N PMFD S++ P + Sbjct: 128 HALKAKVDSMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYMRDI 187 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG + ++ IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ D++ Sbjct: 188 LREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVAAGMPLDKL 247 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ G A L + +P + NRRI I V ++ Sbjct: 248 ARVVGMASSDLLLPEEPRAAQNRRITITVLTKEA 281 >gi|166713570|ref|ZP_02244777.1| flagellar motor protein MotB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 385 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + P S + D+ G QK + R + Sbjct: 63 R--------NPSPLSGKSMAPSPGMNGPGGASTSMIKLGGTADMAKG---QKDEMGRKRD 111 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N + +S K K Sbjct: 112 NAADTTEDSRS----------------------------------------------KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L +++ + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLETLMQELKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L ++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILHELSNFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|330939854|gb|EGH43087.1| flagellar motor protein MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 333 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 136/321 (42%), Gaps = 64/321 (19%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 ++ G+WKI +ADF T +MAFFLV+W++++ + A+ YF + S + Sbjct: 3 GGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFSDSGSPYV- 61 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 IDL ++ N L+ Q+ Sbjct: 62 -------------IDLGGSPEMSPNQT----------------------LNPEVQTTPSP 86 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL- 203 +++ ++E + ++ + ++RL+ L +++ + + Sbjct: 87 DTVPIEAENAETKAEAVE--------------------------QERLEMLLQELQNKVQ 120 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +LFE T+ G+ I I+D N PMFD S+ P +L + + + Sbjct: 121 ENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVP 180 Query: 264 EVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +SI GHTDA+PF + NW LS +RA +A + L+ + +++++ G+A L Sbjct: 181 NKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYD 240 Query: 323 ASDPMNSANRRIDILVEDRQG 343 +P N NRRIDI+V ++ Sbjct: 241 HQNPTNPINRRIDIVVLTKKA 261 >gi|258624680|ref|ZP_05719615.1| chemotaxis LafU protein [Vibrio mimicus VM603] gi|258583072|gb|EEW07886.1| chemotaxis LafU protein [Vibrio mimicus VM603] Length = 315 Score = 222 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ + G+WKI ADFM LMA FLV+W++ + D +KAI + Sbjct: 2 QRQERVVFKRAKGYIYDEHYSGAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N + FD N S + IDL+ D + Sbjct: 62 NSSNV-FDESYGNPFDTSN-----SISPIDLASDSSV----------------------- 92 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S H +S + G + D + + Sbjct: 93 -----PSRHNSNHVVSSFFQGDGDGPESNSLIDGN---------------------FETQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK + + + A V T G+ I + D MF + S P Sbjct: 127 EQLTLLAKVVKKVIGQVSAQG---NVNVTVTPQGLRIVLQDDYKQFMFSRGGSELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V I I GHTD+ PFR NW LS RA A + L+ G+ + Sbjct: 184 DLLLALAPVFQRVANPIIISGHTDSIPFRKKISKTSNWELSASRANVARKALVDGGMPAE 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L + P +S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNQTAPDSSENRRIELFVLT 276 >gi|304412488|ref|ZP_07394094.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307307147|ref|ZP_07586885.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|304349130|gb|EFM13542.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306910386|gb|EFN40817.1| OmpA/MotB domain protein [Shewanella baltica BA175] Length = 306 Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 130/331 (39%), Gaps = 61/331 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY Sbjct: 3 HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 G T F+ S + IDL + IT + + + Sbjct: 63 R--GDMNPTGPINPFELS-----QSSSIIDLEGNMSITPPIIPSSSMPRGGESEGLEEGT 115 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 I ++Q Sbjct: 116 LIPGQFDTQ--------------------------------------------------- 124 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L LA++++ + ++ + + GI I I D N MF + S+ P Sbjct: 125 AQLTVLARELNRVVQN---SSMAENIAVTIVPQGIRILIHDNVNQFMFTRGSAQMQPYFE 181 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L +G +L + T + I GHTD++P+ NW LS +RA A +VL + GV D++ Sbjct: 182 ELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQV 241 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A IA+D +ANRRI+ L+ Sbjct: 242 IQVTGMADQIPYIATDTAAAANRRIEALILT 272 >gi|289665512|ref|ZP_06487093.1| flagellar motor protein MotB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668313|ref|ZP_06489388.1| flagellar motor protein MotB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 385 Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP S ++ + Sbjct: 63 R-----------------NPSPLSGKSP-----------------------------APS 76 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + K T D KG+ + + + E+ K K Sbjct: 77 PGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTTEDSRS-----------KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKIDPQNPINRRISIVVMTQDA 281 >gi|258622497|ref|ZP_05717519.1| chemotaxis LafU protein [Vibrio mimicus VM573] gi|258585197|gb|EEW09924.1| chemotaxis LafU protein [Vibrio mimicus VM573] Length = 315 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ + G+WKI ADFM LMA FLV+W++ + D +KAI + Sbjct: 2 QRQERVVFKRAKGYIYDEHYSGAWKIAMADFMIALMALFLVLWVMQTVNKDERKAIIAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N + FD N S + IDL+ D + Sbjct: 62 NSSNV-FDESYGNPFDTSN-----SISPIDLASDSSV----------------------- 92 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S H +S + G + D + + Sbjct: 93 -----PSRHNSNHVVSSFFQGDGDGPESDSLIDGN---------------------FETQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++L LAK + + + A V T G+ I + D MF + S P Sbjct: 127 EQLTLLAKVVKKVIGQVSAQG---NVNVTVTPQGLRIVLQDDYKQFMFSRGGSELTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V I I GHTD+ PFR NW LS RA A + L+ G+ + Sbjct: 184 DLLLALAPVFQRVANPIIISGHTDSIPFRKKISKTSNWELSASRANVARKTLVDGGMPAE 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L + P +S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNQTAPDSSENRRIELFVLT 276 >gi|296161288|ref|ZP_06844096.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295888446|gb|EFG68256.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 329 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 136/346 (39%), Gaps = 65/346 (18%) Query: 2 NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 NS + ++ +I+++ K D ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 NSRASQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKY 64 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 K+ GI D N P S Sbjct: 65 DKQ------------------GIEDYFNTPLSSLIG------------------------ 82 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++ + + S+ + + + D +KS + + Sbjct: 83 ---------------GNEGTAAARPSVVQGGGRDISDTRPGDGKKSQTQPTPPATAAPTV 127 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 A RL+ L K+++ + A + T G+ I I+D +N PMF Sbjct: 128 APSDA----ARLEQLKAKLTALIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFPS 183 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQ 297 SS P +L +IG L ISI GHTDA P+ NW LS +RA +A + Sbjct: 184 GSSKLQPYAETILTQIGAALNDVDNRISIAGHTDAVPYTAGPEGYSNWELSSERANAARR 243 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ +++ ++ G A ++ NRRI ILV ++ Sbjct: 244 ALVAGGMHGEKLLQVRGLADVLPLNSNIADEPTNRRISILVLNKAA 289 >gi|163758026|ref|ZP_02165114.1| flagellar motor protein [Hoeflea phototrophica DFL-43] gi|162284315|gb|EDQ34598.1| flagellar motor protein [Hoeflea phototrophica DFL-43] Length = 411 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 113/402 (28%), Positives = 180/402 (44%), Gaps = 70/402 (17%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +Q ++ II+K++ D ++ G WKI YADFMT +MAFFLVMW++NA++++TK AI Sbjct: 6 HQGKNEIIIVKRRGGGGDDGHHGGVWKIAYADFMTAMMAFFLVMWLVNASNEETKAAIAS 65 Query: 68 YFNPFG--------KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 YFNP K + K E P+ ++ + + + G Sbjct: 66 YFNPIKLMDDKPADKGIKQVGKSAEGEATAPKSKTEGDESTTGQAGEAGSQKNSTAGEKQ 125 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + EN L+ Q + +++ + G + F P Sbjct: 126 DYSEADYFENPYSVLAEIAQETGTQTNVSDKGDGGAAQSGPATGASGGEAYRDPFDPDFW 185 Query: 180 KEKILAMK-------------------------RKKRLQ----------DLAKKI----- 199 + + K+ LQ DL+ ++ Sbjct: 186 SKSVEKDSDTLEESQSMFEVETFANNRLPESPVDKEPLQDPTDADGPAGDLSAQMAGDGG 245 Query: 200 ------SSTLSGLVADNIVKGVLFETTR-------TGILIS---------IIDQRNTPMF 237 L L +++K + + G+++ I DQ + MF Sbjct: 246 TGALTPEQLLEQLAEADVLKEDIMKALGGALGKLAEGLVVEPAEGGLLVSITDQLDFGMF 305 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 + S++P + ++ ++KIGEVLA I+IRGHTDA PF + DNWRLSL RA+SAY Sbjct: 306 NVGSAVPGRDLVIAMEKIGEVLAERDGAIAIRGHTDARPFASDTDDNWRLSLARAHSAYY 365 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 +L++ G+SE+RIS++SGFA RLK +P++ NRRI+ILVE Sbjct: 366 MLVRGGLSEERISQVSGFADRRLKDPDNPLSEVNRRIEILVE 407 >gi|221069302|ref|ZP_03545407.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] gi|220714325|gb|EED69693.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] Length = 353 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 145/334 (43%), Gaps = 62/334 (18%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 Q IIIK+ ++ G+WKI YADF+T +MAFFL+MW++ +T + Sbjct: 7 QPIIIKRVKKTAH-AHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAQGELQ--------- 56 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 GI N P K+ +S +S + G + K + ++ + Sbjct: 57 ---------GIAAYFNSPL-----KVAMSGGSGAGNSSSIVPGGGNDLSKVHGQVRRSES 102 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + +++S + + +RL Sbjct: 103 EDNANRRSSQTMGRADESA-----------------------------------RDAQRL 127 Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L K+ + ++ + + E T G++I I+D +N PMFD S++ P + Sbjct: 128 HALKAKVDTMIANNARLNEFRSQIRTEITHDGLMIQIVDDQNRPMFDSGSAVVKPYMRDI 187 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L++IG + ++ IS+ GHTDA+P+ N NW LS DRA ++ + L+ +G+ D++ Sbjct: 188 LREIGAAMGNAENRISLSGHTDAAPYGNADRGYSNWELSADRANASRRELVSAGMPLDKL 247 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ G + L + +P + NRRI I V ++ Sbjct: 248 ARVVGMSSSDLLLPEEPRAAQNRRITITVLTKEA 281 >gi|325915929|ref|ZP_08178225.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] gi|325537896|gb|EGD09596.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] Length = 396 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 139/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP S ++ Sbjct: 63 R-----------------NPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 RRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+ + Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMEDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L ++P N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281 >gi|329298550|ref|ZP_08255886.1| OmpA/MotB domain-containing protein [Plautia stali symbiont] Length = 319 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 72/334 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N +++K++ ++ GSWKI YADFMT ++AFF+VMW+I+ + I +Y Sbjct: 3 HGNRPIVLVKRRKHKKHEGSH-GSWKIAYADFMTAMVAFFMVMWLISIANPQELVQIAEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T + D ++P + Sbjct: 62 FKTPLKVALTGGQRSSDSESPIPGGGDDP------------------------------- 90 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 ++K ++ K D++ + ++ L L ++ ++ Sbjct: 91 ----------------------TQKKGEVQKQVDMDAQKRQLDDIRLNRLREKLDQLIEA 128 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL+ L + + +V + + + ID +N PMF S+ P Sbjct: 129 DPRLKALRPHL---IINMVEEGLRIQI-------------IDSQNRPMFKTGSAEVEPYM 172 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I +L IS+ GHTD + + NW LS DRA ++ + L+ G+ Sbjct: 173 RDILRVIAPLLNDIPNKISLSGHTDDFQYASGDRGYSNWELSADRANASRRELVAGGLDG 232 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ ++ G A ++ NRRI +LV + Sbjct: 233 GKMLRVVGMADTMKLKNRGANDAVNRRISLLVLN 266 >gi|188993235|ref|YP_001905245.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris str. B100] gi|167734995|emb|CAP53207.1| motB2 [Xanthomonas campestris pv. campestris] Length = 392 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP S ++ Sbjct: 63 R-----------------NPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+++ Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMADA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L ++P N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281 >gi|157959885|ref|YP_001499919.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157844885|gb|ABV85384.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 336 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 138/330 (41%), Gaps = 44/330 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + IIIK+K + G+WK+ +ADF +MAFF+V+WII D + I ++ Sbjct: 4 RPEPIIIKRKRRGKPRKGHAGAWKVAFADFTLAMMAFFMVLWIIQIADQQERTVIAKHIQ 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 G S FD + P + +D I + + + Sbjct: 64 --GDLFEAGSINPFDLSSSP-----SMLDFEGQMTIQEPVLPTSSSGAGTRG-------- 108 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 +L +G++ K E N LP + + Sbjct: 109 --------------PALHNRIPEGENNAK-----AGKGPELNAMLPG-------KFETQA 142 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ LA++I + + ++ V + G+ I + D N MF + SS P Sbjct: 143 QLEVLAREIDRVIEDV---SMSANVKLQVVPQGVRILMHDNINKFMFTRGSSEMKPYFED 199 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L +G VL+ +SI GHTD++PF NW LS RA A +VL +GV +++ Sbjct: 200 LLMALGPVLSKVENKMSISGHTDSTPFIGKTFTNWELSSKRALLARRVLGYAGVKNNQVL 259 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A I+ DP +ANRRI++++ Sbjct: 260 QVTGMADQAPYISHDPAAAANRRIEMIIMT 289 >gi|312884825|ref|ZP_07744517.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC BAA-2122] gi|309367477|gb|EFP95037.1| Flagellar motor rotation protein MotB [Vibrio caribbenthicus ATCC BAA-2122] Length = 331 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 122/333 (36%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ + D + G+WK+ +ADFM LMA FLV+WI+ D + +KAI + Sbjct: 2 QRQESVVFKRSKSEDHDVVHGGAWKVAFADFMIALMALFLVLWIMQVVDREERKAIMAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + E+S N D S Q + Sbjct: 62 H---------------SASVFEKSYGNPFDTS-----------------------QSISP 83 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +S S H G TD N + Sbjct: 84 IDLASESSVPSRHDLTHTVNSFFDGDGDGPETDSLIPGN-----------------FDTQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +RL LAK I A V T G+ + + D MF + S P Sbjct: 127 ERLAALAKVIEEATKQNGAQG---NVNITVTPQGLRVVLQDDEKQTMFSRGGSKLTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307 +L I + I I GHTD+ +++ NW LS RA +A L+++G+ + Sbjct: 184 DLLVAIAPIFEKVANPIIISGHTDSIRYKSRFNIKSNWELSTSRANAARYTLVQAGMPSE 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L P +S NRRI++ V Sbjct: 244 RVLQVTGMSDRALLNPQAPKSSENRRIELFVLT 276 >gi|21233083|ref|NP_639000.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770023|ref|YP_244785.1| flagellar motor protein MotB [Xanthomonas campestris pv. campestris str. 8004] gi|21114936|gb|AAM42924.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575355|gb|AAY50765.1| chemotaxis MotB protein [Xanthomonas campestris pv. campestris str. 8004] Length = 393 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EGKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP S ++ Sbjct: 63 R-----------------NPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+++ Sbjct: 186 VDILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVGGGMADA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L ++P N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTNPQNPINRRISIVVMTQDA 281 >gi|126176136|ref|YP_001052285.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|125999341|gb|ABN63416.1| OmpA/MotB domain protein [Shewanella baltica OS155] Length = 306 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 76/331 (22%), Positives = 129/331 (38%), Gaps = 61/331 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ IIIK++ + G+WK+ +ADF +MA F+V+WI+ D + I QY Sbjct: 3 HKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 G T F+ S + IDL + I + + + Sbjct: 63 R--GDMNPTGPINPFELS-----QSSSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGT 115 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 I ++Q Sbjct: 116 LIPGQFDTQ--------------------------------------------------- 124 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L LA++++ + ++ + + GI I I D N MF + S+ P Sbjct: 125 AQLTVLARELNRVVQN---SSMAENIAVTIVPQGIRILIHDNVNQFMFTRGSAQMQPYFE 181 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L +G +L + T + I GHTD++P+ NW LS +RA A +VL + GV D++ Sbjct: 182 ELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQV 241 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A IA+D +ANRRI+ L+ Sbjct: 242 IQVTGMADQIPYIATDTAAAANRRIEALILT 272 >gi|163856411|ref|YP_001630709.1| flagellar motor protein MotB [Bordetella petrii DSM 12804] gi|163260139|emb|CAP42440.1| flagellar motor component MotB [Bordetella petrii] Length = 312 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 66/334 (19%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+ ++I++K P++ GSWKI YADF+T +MAFFLVMW+I+ + + + +YF Sbjct: 5 NNHRVVIRRK-RGGSRPHHGGSWKIAYADFITAMMAFFLVMWLISIVPKEELRGLAEYFR 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + +T E + + + D + + Q + Sbjct: 64 MPLRVALTGGPNYSAETSAIPGGGSDPLR------------DEGEVRKSDGSRVQSQVQS 111 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + E K L E+ L Sbjct: 112 DAERRDRHALERLKRRLDSMLEENPVLKNFRP---------------------------- 143 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+ D +G+ + +D + PMF S+ P Sbjct: 144 --------------QLLIDMTTEGLRIQI---------VDNQKRPMFATGSAEVQPYMRD 180 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+++G VL ISI GHTDA+ + A NW LS DRA ++ Q L+ G++E + Sbjct: 181 ILRELGPVLNELPNKISIAGHTDATQYARGERAYSNWELSADRANASRQELVAGGMAEGK 240 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +I G + + DP + NRRI ++V +R+ Sbjct: 241 LMRIQGLSSSMSLVKDDPYAAVNRRISLVVLNRR 274 >gi|33592172|ref|NP_879816.1| flagellar motor protein MotB [Bordetella pertussis Tohama I] gi|33596124|ref|NP_883767.1| flagellar motor protein MotB [Bordetella parapertussis 12822] gi|33601523|ref|NP_889083.1| flagellar motor protein MotB [Bordetella bronchiseptica RB50] gi|33571817|emb|CAE41326.1| chemotaxis protein MotB [Bordetella pertussis Tohama I] gi|33573127|emb|CAE36772.1| chemotaxis protein MotB [Bordetella parapertussis] gi|33575959|emb|CAE33038.1| chemotaxis protein MotB [Bordetella bronchiseptica RB50] gi|332381588|gb|AEE66435.1| flagellar motor protein MotB [Bordetella pertussis CS] Length = 315 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 67/318 (21%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 ++ GSWKI YADF+T +MAFFLVMW+I+ + KGI + Sbjct: 19 GGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREEL------------------KGIAE 60 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 P R + S E ++ + + +++E + Sbjct: 61 YFRMPLRVALTGGPSSSAETSAIPGG---------------GQDPLRSQGDVRRAEGNRV 105 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS- 204 + + + RL+ L ++ + + Sbjct: 106 EAQPMGD-------------------------------AERRDRHRLERLKVRLENLIEE 134 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 V N +L + T G+ I I+D +N PMF S+ P +L+++G VL Sbjct: 135 SPVLKNFRPQLLIDMTTEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPN 194 Query: 265 VISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 ISI GHTDAS + A NW LS DRA ++ Q L+ G+ E ++ +I G A + Sbjct: 195 KISIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASSMSLV 254 Query: 323 ASDPMNSANRRIDILVED 340 DP + NRRI ++V + Sbjct: 255 KDDPFAAVNRRISLVVLN 272 >gi|114570105|ref|YP_756785.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114340567|gb|ABI65847.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 307 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 39/310 (12%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW+IN T + K+ I YF P + + G P Sbjct: 25 AWKVAYADFVTAMMAFFLLMWLINTTTPEQKRGIADYFAPASVSPSNSGSGAPLAGTSPG 84 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 G ++Q+++ + Q E ++ + Sbjct: 85 DDGV-----------------QGSGDSSQRQRLAPTAPQLNDRDRQQTPEGSPEAVESVT 127 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E ++ + ++ + + L S AM+ L +L Sbjct: 128 E-----ITASAMAEAQQRRDAAELHSASMSLRQAMQEMPELAEL---------------- 166 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 VL + T G+ I +IDQ PMFD ++ P + +L+ + + +S+ GH Sbjct: 167 SNHVLIDETPEGLRIQLIDQEGRPMFDPGATRPNERAVTLLRAVARIAERLPNRLSVAGH 226 Query: 272 TDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TD++P NW LS DRA +A VL ++G+S+DRI ++ G A DP Sbjct: 227 TDSAPAAPGADYTNWELSADRANAARSVLQRAGISDDRIYEVRGKAGSEPLYPDDPYMPG 286 Query: 331 NRRIDILVED 340 NRRI +++ Sbjct: 287 NRRISVVLLR 296 >gi|187920655|ref|YP_001889687.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans PsJN] gi|187719093|gb|ACD20316.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 329 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 134/346 (38%), Gaps = 65/346 (18%) Query: 2 NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 S + ++ +I+++ + D ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 RSRASREEQAPAPVIVRRSRKGGDHGAHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKF 64 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 K+ GI D N P S N + Sbjct: 65 DKQ------------------GIEDYFNTPLSSLLG-----------GNEGTTAARPSVV 95 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + + + + + QSE ++T S D Sbjct: 96 QGGGRDISDTRPAVGKKSQSEPTPPAVTTPSVAPSDAT---------------------- 133 Query: 181 EKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 RL+ L K+++ + + + T G+ I I+D +N PMF Sbjct: 134 ----------RLEQLKAKLTALIEQSPILKAFKDQIRISITNEGLRIEIVDSQNRPMFPS 183 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQ 297 SS P + +L +IG L +SI GHTDA P+ NW LS +RA +A + Sbjct: 184 GSSKLQPYAVTILTQIGAALNDVDNRVSIAGHTDAVPYTAGPEGYSNWELSSERANAARR 243 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ +++ ++ G A + NRRI ILV ++ Sbjct: 244 SLVAGGMHGEKLLQVRGLADVLPLNSQVADEPTNRRISILVLNKAA 289 >gi|304311521|ref|YP_003811119.1| Chemotaxis protein MotB [gamma proteobacterium HdN1] gi|301797254|emb|CBL45474.1| Chemotaxis protein MotB [gamma proteobacterium HdN1] Length = 459 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 35/333 (10%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + ++ I+IK+ V + G+WK+ +ADF+T +MA FLV+W+I +T K AI YF Sbjct: 5 DANKPIVIKR-VKKYAAGAHGGAWKVAFADFVTAMMALFLVLWLIESTTQAEKLAISMYF 63 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + + R + +S T+ + + Q + Sbjct: 64 SNPTGYTEGGSPFVVNLGG-GMRDTDTIERVSSPAPPTQEPDVMPDRNIQPLDNIQTNPS 122 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 QQ+E + Sbjct: 123 QEKSDLEKQQAEKQMQEQQLQEMH-------------------------------EQRET 151 Query: 190 KRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + ++L + + + ++ + T G+LI ++D+ PMFD + P Sbjct: 152 QEFEELKRALEEKIEADPTIGAFRDQIIIKITEDGLLIEVVDKDKRPMFDLGKTSVKPYF 211 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+ I + L + +SI GHTDA PF + NW LS DRA +A + L+K+G+ ++ Sbjct: 212 NSILKAIAKTLEGTHNPLSISGHTDAVPFTESENYTNWELSSDRANAARRALLKAGMKKE 271 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +I+++ G A L P NRRI IL Sbjct: 272 QIARVVGLADSILFDEKHPDAPINRRISILAMR 304 >gi|83858208|ref|ZP_00951730.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633] gi|83853031|gb|EAP90883.1| chemotaxis MotB protein [Oceanicaulis alexandrii HTCC2633] Length = 303 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 42/332 (12%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +DQ I+IKK ++ G+WK+ YADF+T +MAFFL+MW+IN T+ + ++ I YF Sbjct: 2 SSDQPIVIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLMMWLINNTEPEQRQGIADYF 61 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 P + T S G+ + + ++ SI E + R E Sbjct: 62 APASVSRTTSGSGGVLGGTSFGDDGARGSGSSSIVERLAP-----------------RSE 104 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 ++ + Q+ G+ S L ++ + E + A++ Sbjct: 105 QDVSREQEADQASGAAG--------GQPEASSDALASAVARREAAQFASAEQSLRQALQD 156 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L +L + VL E T G+ I +IDQ PMF+ + P Sbjct: 157 MPELAEL----------------SRHVLIEETPEGLRIQLIDQEGRPMFEPGAIEPNSRA 200 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 V+L+ I E++ I+I GHTDASP NW LS RA +A ++ ++G+ + R Sbjct: 201 RVLLRTISEIVLRLPNRITISGHTDASPAPVGGVSNWELSSARANAALNIMTEAGIPDHR 260 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 I+++ G A DP NRR+ I + Sbjct: 261 IAEVRGKAGAEPLFPDDPYLPGNRRLSITLLR 292 >gi|330951464|gb|EGH51724.1| flagellar motor protein MotB [Pseudomonas syringae Cit 7] Length = 351 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 65/336 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 EN+Q IIIK+ V ++ G WKI +ADF T +MAFFLV+W++++ + A+ YF Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGGWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + S + IDL ++ N T Sbjct: 61 KDPVGFSDSGSPYV--------------IDLGGSPEMSPNQTLNPEVKTTPSP------- 99 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L + E + Sbjct: 100 -----------------------------------------DTVPLEAETAETKAEEVEQ 118 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L +++ + + +LFE T+ G+ I I+D N PMFD S+ P Sbjct: 119 ERLEMLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYF 178 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + + + ISI GHTDA+PF + NW LS +RA +A + L+ + Sbjct: 179 EDILLALADTIKSVPNKISISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDS 238 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G+A L +P N NRRIDI+V ++ Sbjct: 239 QVARVVGYASSALYDHQNPTNPVNRRIDIVVLTKKA 274 >gi|149908742|ref|ZP_01897403.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36] gi|149808284|gb|EDM68223.1| Hypothetical chemotaxis LafU protein [Moritella sp. PE36] Length = 334 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 138/329 (41%), Gaps = 41/329 (12%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 + IIIK+K G+WK+ +ADFM LMAFF+V+WI+ +D D +K + N Sbjct: 2 SESIIIKRKRRSRGKSKGGGAWKVAFADFMLALMAFFMVLWILAVSDADERKEFSE--NI 59 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 +L + FD P +S ++ Sbjct: 60 RNYSLFESESNPFDFSGNPLPTSIGA--------------------------------DL 87 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 L + Q + K+S+++ + + + ++ D E + + L K ++ + + Sbjct: 88 SVLDSKHQPDLTKHSVSKKTARSLNQ-RTADDEGDSGYGDKPMMNSLLKGQLTSPDQLAL 146 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + I+ ++ + + E G+ I + D MF + S+ P V Sbjct: 147 LASKLEAITDSI------GAAENIDIEVVPQGLRILLHDNAKHKMFRRGSAQMTPFFQDV 200 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 L+ + V + I GHTD S F N A NW LS RA A Q+L G+ +R+++ Sbjct: 201 LRSLAPVFIPIENKLMISGHTDRSKFHNAAFTNWELSSQRALQARQMLQIGGMPRERVAQ 260 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVED 340 + + A++P +S NRRI++L+ Sbjct: 261 VVAMSDTMPIDAANPKSSVNRRIELLLLT 289 >gi|283851000|ref|ZP_06368285.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283573646|gb|EFC21621.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 344 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 76/331 (22%), Positives = 132/331 (39%), Gaps = 40/331 (12%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q++ II K+V + GSWK+ YAD +T +MAFFL+MW++N D K+ + Sbjct: 3 EQDHKAKNIIIKRVKKVAAGAHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQDKKEQLAS 62 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN F + +G Q Sbjct: 63 YFNDFSIFQNPGPSAQLLDSG-------------------------GLGPPGAVVGSQDE 97 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ + + K T D + G+ L E + + Sbjct: 98 RPDVAIDRDGKAPSGGKGQGTGDLDGGRQLDAKAAAEAQAAAKAEAAAEAQAVA------ 151 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L +++ L V + V + + I I+D+ + P+FD LP+ Sbjct: 152 -------LEQQVEKALQESV-PELAGQVSVTQEKDKVRIEIMDKSDRPLFDLGGVALLPD 203 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V+ ++I GHTDA + + NW LS RA SA +++++ G+ D Sbjct: 204 AQRILAAVTGVIRKDGIKVAIEGHTDAYRY-SGTYSNWDLSAGRALSARRLMLQQGLPPD 262 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 +++ +SGFA R + P+++ NRRI +L+ Sbjct: 263 QVAAVSGFADTRPYVPGKPLDARNRRISLLL 293 >gi|261341475|ref|ZP_05969333.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316] gi|288316271|gb|EFC55209.1| chemotaxis protein LafU [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 79/331 (23%), Positives = 132/331 (39%), Gaps = 62/331 (18%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + IIK+ + G+WK+ +ADF +MA F+V+WI+ + ++ +K I N Sbjct: 7 KEHTTIIKRSSRKSHDTFHGGAWKVAFADFTLAMMALFMVLWIMGSVTEEERKEIVSQLN 66 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + IFD Q + N + + E Sbjct: 67 ---------GESIFDGQTLSPITQPNGV----------------------GGKIAVTEKR 95 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 Q E + S D + + + Sbjct: 96 DRGDHKHPQKETPTPAAMAKSASLDD---------------------------VKSRSQN 128 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++DLA+ I S A + +K E G+ I I D + MF +SS+I P Sbjct: 129 EIEDLARIIMKITSAYDAQSNLK---IEIVPQGLRILITDDQKREMFQRSSAILTPFFKR 185 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + L I I GHTDA+ FR+ +N+ LS +RA A +VL +G+ +D++ Sbjct: 186 LLTEFAPALNKIDNKIIITGHTDATRFRDQDLYNNYNLSGERAMQARKVLTHAGLDQDKV 245 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++SG A L ++P++S+NRRI+I+V Sbjct: 246 LQVSGMADQMLLDPANPLSSSNRRIEIMVLT 276 >gi|330501121|ref|YP_004377990.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328915407|gb|AEB56238.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 313 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 78/345 (22%), Positives = 127/345 (36%), Gaps = 63/345 (18%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G E IIIK++ + G+WK+ +ADF +MA F+V+WII D Sbjct: 1 MKPRGGDGHE----IIIKRRGKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQTQD 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +A N L+ GIFD + T +D Sbjct: 57 ASRANADMLN---NPLVDGGAGIFDGTS-----------------TTPLDLDGVPVQVAP 96 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++ + + E R Sbjct: 97 RRDPENRARTPQEDPGAALGEGLPGEPRRPH----------------------------- 127 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 ++Q+LAK + L A+ + + G+ I I D MF++ Sbjct: 128 -----FAEPLQMQELAKLMKELALQLDAEA---NIEVQVVPQGLRILIKDDAQRFMFNRG 179 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQV 298 SS P +L+++ +L + I GHTD+ P+R +NW LS DRA A V Sbjct: 180 SSHLNPHFETLLRRLAGILGRVENHLIISGHTDSMPYRGVVGGYNNWNLSGDRALRARNV 239 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+++G+ + +++ A + +DP N ANRRI++L+ Q Sbjct: 240 LVEAGLPTGNVLQVAAQADGMPLLPNDPENGANRRIELLLLTSQA 284 >gi|332531608|ref|ZP_08407505.1| OmpA/MotB [Hylemonella gracilis ATCC 19624] gi|332038971|gb|EGI75400.1| OmpA/MotB [Hylemonella gracilis ATCC 19624] Length = 318 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 138/338 (40%), Gaps = 67/338 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + Q IIIK+ + G+WKI YADF+T +MAFFL+MW++ +T K + Sbjct: 4 DAKKLQPIIIKRVKKGGHGVH-GGAWKIAYADFVTAMMAFFLLMWLLGSTSKGDLKGLAD 62 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K+ + +S + G + + Sbjct: 63 YFRAPL-----------------------KVSMVGGNGSGASSSIMPGGGADLTLTAGQH 99 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + +++E + R L LS + A+ Sbjct: 100 PEDASAADKRRRAETARRDAQR-------------------------LAALSAKISAAIS 134 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +L+ +++I E+T G+ I I+D++ PMF ++ P Sbjct: 135 NNAQLRRFSRQIQ----------------LESTPDGLKIQIVDEQGRPMFTTGNAAVQPY 178 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 +L++IG L IS+ GHTD + + N NW LS DRA +A + L+ +G+ Sbjct: 179 MRDILREIGAALNGVENKISLDGHTDVTQYGNQGRSYSNWELSADRANAARRELVAAGMP 238 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ED++ +++G A L + +P ANRRI I+V ++ Sbjct: 239 EDKLLRVTGLAASNLLVPDNPTAPANRRISIMVLTKEA 276 >gi|307824077|ref|ZP_07654304.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307734861|gb|EFO05711.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 302 Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 60/334 (17%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 DQ II KKV ++ G+WK+ YADF+T +MAFFL+MW++ T + +K Sbjct: 3 DQQPIIVKKVKKGGHAHHGGAWKLAYADFVTAMMAFFLLMWLLGTTSEPERK-------- 54 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 GI + P ++S + L + + + Sbjct: 55 ----------GIAEYFQDPFKASTEERGLDVGDRTSII---------------------- 82 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S ++G+ T E I EE +++ L ++K Sbjct: 83 ----------QAGGSDITSQDQGQVDKGKTAEEVEITPEEIEHKAEELEKEKLENLKQK- 131 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + KI ST + + + E T G+ I I+D +N PM+ +S+ P+ ++ Sbjct: 132 ---IQYKIDSTPE---LNEFKEQIKLEITSEGLRILIVDAQNRPMYKLASAETEPQIKLI 185 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L+ + V+ +S+ GHTDA PF NW LS DRA +A L ++G++E++I Sbjct: 186 LRALAPVINELPNKVSLNGHTDARPFPPNQKKYTNWELSSDRANAARYELNQAGLAEEKI 245 Query: 310 SKISGFAHHRLKIAS-DPMNSANRRIDILVEDRQ 342 ++ G + A+ +P++ NRRI I+V +++ Sbjct: 246 LRVIGLSSSVPYSATAEPLDPINRRISIIVMNKK 279 >gi|304413521|ref|ZP_07394994.1| flagellar motor component [Candidatus Regiella insecticola LSR1] gi|304284364|gb|EFL92757.1| flagellar motor component [Candidatus Regiella insecticola LSR1] Length = 326 Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 58/335 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + IIK+ + G+WK+ +ADF +MA F+V+WI+ A ++ + I + Sbjct: 6 RSTHTTIIKRSAKKHHAGVHTGAWKVAFADFTLAMMALFMVLWIVGAVSEEERHEIMSHI 65 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + I N L I N+ + E Sbjct: 66 H--------------------------------GNTIFSNQSFLSIPLKNKNGADKNFEM 93 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + E + N+ + F P K + K Sbjct: 94 LHTNKTRDSMKERARE----------------------NRLKEPFKEPDQIRKEVVDKSA 131 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +QDL++ + L A N + E G+ I I D + MF SS++ P Sbjct: 132 TEMQDLSRMV---LEISKAHNAQSNLNIEMVPQGLRILIQDDKKREMFPLSSALLTPFFT 188 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L ++ VL + I GHTD + +R+ +NW LS +RA +A + L + G+ + Sbjct: 189 RLLAELAPVLNDLNNKVIITGHTDGARYRDQELYNNWNLSGERAMAARRALERGGLDDAH 248 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 I +I+ A L DP+ +ANRRI+I+V + Sbjct: 249 ILQINAMADQMLLDEKDPLGAANRRIEIMVLTKAA 283 >gi|45442813|ref|NP_994352.1| hypothetical protein YP_3056 [Yersinia pestis biovar Microtus str. 91001] gi|108809034|ref|YP_652950.1| hypothetical protein YPA_3043 [Yersinia pestis Antiqua] gi|150260228|ref|ZP_01916956.1| lateral flagellar proton motor protein B [Yersinia pestis CA88-4125] gi|162420691|ref|YP_001604823.1| hypothetical protein YpAngola_A0200 [Yersinia pestis Angola] gi|165924864|ref|ZP_02220696.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. F1991016] gi|165939072|ref|ZP_02227624.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. IP275] gi|166008977|ref|ZP_02229875.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. E1979001] gi|166212177|ref|ZP_02238212.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. B42003004] gi|167398344|ref|ZP_02303868.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419079|ref|ZP_02310832.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466315|ref|ZP_02331019.1| flagellar motor protein B [Yersinia pestis FV-1] gi|170022980|ref|YP_001719485.1| hypothetical protein YPK_0731 [Yersinia pseudotuberculosis YPIII] gi|218927933|ref|YP_002345808.1| hypothetical protein YPO0747 [Yersinia pestis CO92] gi|229837433|ref|ZP_04457596.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A] gi|229840644|ref|ZP_04460803.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842804|ref|ZP_04462956.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. India 195] gi|294502809|ref|YP_003566871.1| flagellar motor protein [Yersinia pestis Z176003] gi|45437679|gb|AAS63229.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str. 91001] gi|108780947|gb|ABG15005.1| putative chemotaxis membrane protein [Yersinia pestis Antiqua] gi|115346544|emb|CAL19421.1| putative chemotaxis membrane protein [Yersinia pestis CO92] gi|149289636|gb|EDM39713.1| lateral flagellar proton motor protein B [Yersinia pestis CA88-4125] gi|162353506|gb|ABX87454.1| flagellar motor protein B [Yersinia pestis Angola] gi|165913028|gb|EDR31653.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. IP275] gi|165923064|gb|EDR40215.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. F1991016] gi|165992316|gb|EDR44617.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. E1979001] gi|166206923|gb|EDR51403.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. B42003004] gi|166963073|gb|EDR59094.1| flagellar motor protein B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050848|gb|EDR62256.1| flagellar motor protein B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|169749514|gb|ACA67032.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] gi|229690071|gb|EEO82128.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. India 195] gi|229697010|gb|EEO87057.1| Flagellar motor rotation protein motB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705556|gb|EEO91566.1| Flagellar motor rotation protein motB [Yersinia pestis Pestoides A] gi|262360841|gb|ACY57562.1| flagellar motor protein [Yersinia pestis D106004] gi|262364786|gb|ACY61343.1| flagellar motor protein [Yersinia pestis D182038] gi|294353268|gb|ADE63609.1| flagellar motor protein [Yersinia pestis Z176003] Length = 303 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 136/344 (39%), Gaps = 67/344 (19%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +H IIK+ + G+WK+ +ADF +MA F+V+WI+ ++ Sbjct: 1 MRNHA----SGGATTIIKRANRKKHHVRHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I N K IF +Q+ S++K Sbjct: 57 ERQEIVAQLN---------GKTIFAQQSFISIPSKSK----------------------- 84 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 +S GK+ K T +I E P Sbjct: 85 ----------------------SGGGKLSNSIDGKEQAKETKSNLAIEVPE-----PEQS 117 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + K + +++L++ I S N + E G+ I I D + MF +S Sbjct: 118 LEEVVDKSRHEMEELSRIIMQITSAY---NAQSNLQMEVVPQGLRILIQDDQQRDMFQRS 174 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A++ L Sbjct: 175 SAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLYNNWNLSGERALMAHKAL 234 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + G+ E R+ +I+ A L +DP+ + NRRI+I+V + Sbjct: 235 VNGGLDEGRVLQINAMADQMLLDPTDPLAAKNRRIEIMVLTKTA 278 >gi|303248925|ref|ZP_07335172.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489648|gb|EFL49584.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 355 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 130/330 (39%), Gaps = 46/330 (13%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ + II K+V + GSWK+ YAD +T +MAFFL+MW++N + K+ + Y Sbjct: 3 EQGQKANIIIKRVKKVAGGAHGGSWKVAYADLVTAMMAFFLLMWLLNMVPQEKKEQLASY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 FN F + +G Q Sbjct: 63 FNDFSLFQNPGPSSQLLDSG-------------------------GLGPPAVVVGSQDER 97 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 ++ ++ T D + GK L E + + Sbjct: 98 PDVAIDRGGKEPSGGAGQDTGDLDGGKRLEAKRRAEAAAKADAAAKA------------- 144 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L ++ L V + V + + I I+D+ + P+FD LP+ Sbjct: 145 ------LEGQLEQALQKDV-PELAGQVSVTQSNDKVRIEIMDKADRPLFDLGGVTLLPDA 197 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + +V+ ++I GHTDA + + NW LS RA +A +++++ G+S D+ Sbjct: 198 KRILAAVTDVIKKEGVKVAIEGHTDAYRY-SGTYTNWDLSAGRALAARRMMIQQGLSPDQ 256 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ ++G+A R + + + NRRI +L+ Sbjct: 257 VAAVTGYADTRPYVPGNLYDPKNRRISLLL 286 >gi|260431755|ref|ZP_05785726.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157] gi|260415583|gb|EEX08842.1| chemotaxis protein MotB [Silicibacter lacuscaerulensis ITI-1157] Length = 279 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 121/332 (36%), Gaps = 58/332 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIKKK ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 4 QTNAAPIIIKKKRTSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P I N V + Sbjct: 64 FSP---------------------------------TIPVNPVSGGGDGAFGGDNMFSEK 90 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + S + + R S + + E Sbjct: 91 TMVMDGSGATNKNPTEAKRARGSTGVDAEGGGRGATEDFSTLEATL-------------- 136 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + +V+ +K ++ T G+++ + D + P+F+ + P Sbjct: 137 ----------LGRAGESMVSKKALKHIVTRVTDKGLVVELFDTDDEPLFEPGTDNPTQLM 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ + T I++ GH +SP W LS RA Q+L GV R Sbjct: 187 RALVLFVARSSDLVTNAIAVEGHVKSSPLVVAHNPAWELSTSRAQVIRQLLQDKGVRPSR 246 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +++++G A +L + +PM + N RI+I+ Sbjct: 247 LNRVTGHADRKLAV-ENPMAARNDRIEIIFLR 277 >gi|192359644|ref|YP_001981667.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107] gi|190685809|gb|ACE83487.1| chemotaxis protein MotB [Cellvibrio japonicus Ueda107] Length = 333 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 60/336 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + Q +IIKK+ ++ SWK+ ADFMT +MAFFL+MW++ T ++ KKAI QY Sbjct: 2 ERGAQPLIIKKRKGRGH-GHHGSSWKVALADFMTAMMAFFLLMWLLGGTTEEEKKAISQY 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F G + G +G NQ + Q+ Sbjct: 61 FQDPGSQYVIGEGGA------------------------------DLGLINQDRPIQQ-- 88 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 S ++Q + ++ +++ + ++ + Sbjct: 89 ------SQAEQDTMETANTQEFTQDDQEVTEDK------------------IKREMERIE 124 Query: 189 KKRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++LQ+L +++ + ++ L V I +L + T G+ I I+D+ PMFD S+ Sbjct: 125 NEQLQELKEQLETEINQLDSVFQQIKDQILIDFTALGLRIQIVDKDQRPMFDVGSANLKT 184 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + VLQ + +L ISI GHTDA+P+ N NW LS DRA +A + +++ Sbjct: 185 YSKEVLQALAPILDKVPNKISITGHTDATPYGANATYTNWELSADRANAARRAMLEGSYP 244 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 E++++ + G + P+ NRRI I+V + Sbjct: 245 ENKVATVQGMGSVAPLLVDKPLEPINRRIAIIVLKK 280 >gi|255021445|ref|ZP_05293492.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] gi|254969150|gb|EET26665.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] Length = 307 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 127/337 (37%), Gaps = 66/337 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E Q I+IK+ + G+WKI YADF+T LMAFFL+MW++ +T T + Sbjct: 5 EKSQPIVIKRIKKT--AGGHGGAWKIAYADFVTALMAFFLLMWLLGSTTKATLQ------ 56 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 GI PE+ S S + N I T + Q + + Sbjct: 57 ------------GIAQWFKNPEQVSLMGGPGSGSSNSVLNGGGSNINKTVGEVQRGQKKQ 104 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ + + Sbjct: 105 SMPTNEAPADRSQTVD-------------------------------------------Q 121 Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L++L K+ + + + +L T G+ I ++D PMF S++ P Sbjct: 122 RNLRELKNKLMAQIKSNPELAAFRHQLLISITPEGLRIQVVDSSKRPMFANGSTVLEPYA 181 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + I L ISI GHTDA + N+ LS RA S Q+L++SG++E Sbjct: 182 RTIFSAIAPTLDELPNRISITGHTDALRYLNEGRGYSNFNLSAGRANSVRQILVQSGLAE 241 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ ++ G L + DP + NRR+ I+V R Sbjct: 242 NKVLRVVGMGSAVLFVPKDPDSPLNRRVSIVVLSRAA 278 >gi|307726280|ref|YP_003909493.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307586805|gb|ADN60202.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 330 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 84/347 (24%), Positives = 132/347 (38%), Gaps = 66/347 (19%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLG--SWKIVYADFMTVLMAFFLVMWIINATDD 59 S G + QE II ++ D +WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 RSRGSQEQEAPPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSK 64 Query: 60 DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 K+ GI D N P S Sbjct: 65 FDKQ------------------GIEDYFNTPLSSLLG----------------------- 83 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 SQ + + ++ + + D +K+ + P++ Sbjct: 84 ----------------GSQGTASARPNVIEGGGRDISDTRPGDGKKTQIEPAT----PVN 123 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFD 238 +A RLQ L +K+ S + A + T G+ I I+D +N PMF Sbjct: 124 VVPTVAPADAARLQQLKEKLVSLIEQSPALKAFKDQIRISITNEGLRIEIVDSQNRPMFA 183 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAY 296 S + +L +IG L ISI GHTDA P+ NW LS +RA +A Sbjct: 184 SGSPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERANAAR 243 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + L+ G+ +++ ++ G A ++ NRRI ILV ++ Sbjct: 244 RALVAGGMHGEKLLQVRGLADVLPLNSNVVDEPTNRRISILVMNKAA 290 >gi|153948417|ref|YP_001399654.1| hypothetical protein YpsIP31758_0662 [Yersinia pseudotuberculosis IP 31758] gi|152959912|gb|ABS47373.1| flagellar motor protein B [Yersinia pseudotuberculosis IP 31758] Length = 303 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 135/344 (39%), Gaps = 67/344 (19%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +H IIK+ + G+WK+ +ADF +MA F+V+WI+ ++ Sbjct: 1 MRNHA----SGGATTIIKRANRKKHHARHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I N K IF +Q+ S++K Sbjct: 57 ERQEIVAQLN---------GKTIFAQQSFISIPSKSK----------------------- 84 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 +S GK+ K T +I E P Sbjct: 85 ----------------------SGGGKLSNSIDGKEQAKETKSNLAIEVPE-----PEQS 117 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + K + +++L++ I S N + E G+ I I D MF +S Sbjct: 118 LEEVVDKSRNEMEELSRIIMQITSAY---NAQSNLQMEVVPQGLRILIQDDLQRDMFQRS 174 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A++ L Sbjct: 175 SAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLYNNWNLSGERALMAHKAL 234 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + G+ + R+ +I+ A L +DP+ + NRRI+I+V + Sbjct: 235 VSGGLDKGRVLQINAMADQMLLDPTDPLAAKNRRIEIMVLTKTA 278 >gi|170692674|ref|ZP_02883836.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170142330|gb|EDT10496.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 328 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 135/345 (39%), Gaps = 64/345 (18%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 S G +++ I+ + K D ++ G+WKI YADF+T +MAFFL+MW++ +T Sbjct: 5 RSRGSEDEAPPPIIVRRSKKGDDHGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKFD 64 Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 K+ GI D N P S Sbjct: 65 KQ------------------GIEDYFNTPLSSLLG------------------------- 81 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 S+ + + S+ + + + D +K+ + P++ Sbjct: 82 --------------GSEGTAAARPSVVQGGGRDISDTRPGDGKKTQIEAAT----PVNVV 123 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 +A RLQ L +K+ S + + T G+ I I+D +N PMF Sbjct: 124 PTVAPADAARLQQLKEKLISLIEQSPTLKAFKDQIRISITNEGLRIEIVDSQNRPMFASG 183 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQV 298 S + +L +IG L ISI GHTDA P+ NW LS +RA +A + Sbjct: 184 SPRLQTYAVAILTQIGAALNDVENRISIAGHTDAVPYTGGPVGYSNWELSSERANAARRA 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ +++ ++ G A ++ NRRI ILV ++ Sbjct: 244 LVSGGMHGEKLLQVRGLADVLPLNSNVVDEPTNRRISILVMNKAA 288 >gi|158327337|emb|CAM82843.1| flagellar motor protein MotB [Yersinia enterocolitica W22703] Length = 302 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 141/337 (41%), Gaps = 63/337 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N Q I+K+ + + G+WK+ +ADF +MA F+V+WI+ ++ ++ I Sbjct: 4 NARGGQTTIVKRAARKKHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEEERQEIVA 63 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 N K IF +Q+ S++K Sbjct: 64 QLN---------GKTIFAQQSFISIPSKSK------------------------------ 84 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 DS G + K T ++ E P + L + Sbjct: 85 ---------------SGGGKFSDSVDGHEQAKETKSNLAVEVPE-----PEQSLEELVDR 124 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + +++L + I+ S A + +K E G+ I I D ++ MF +SS++ P Sbjct: 125 SGREMEELTRIITQITSAYDAQSNLK---MEVVPQGLRILIQDDKHRDMFQRSSAVLTPF 181 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L ++ I I GHTDAS +R+ + +NW LS +RA A++ L+K G+ + Sbjct: 182 FSRLLAELAPAFNEMDNKIIITGHTDASRYRDQVLYNNWNLSGERALMAHKALVKGGLDD 241 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 DR+ +I+ A L +++P+ + NRRI+I+V + Sbjct: 242 DRVLQINAMAEQMLLDSAEPLAAKNRRIEIMVLTKTA 278 >gi|186896751|ref|YP_001873863.1| hypothetical protein YPTS_3453 [Yersinia pseudotuberculosis PB1/+] gi|186699777|gb|ACC90406.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 67/344 (19%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +H IIK+ + G+WK+ +ADF +MA F+V+WI+ ++ Sbjct: 1 MRNHA----SGGATTIIKRANRKKHHVRHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I N K IF +Q+ S++K Sbjct: 57 ERQEIVAQLN---------GKTIFAQQSFISIPSKSK----------------------- 84 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + S + K + + EKS+ + Sbjct: 85 -------------SGGGKLSNSIDGNEQAKETKSNLAIEVPEPEKSLEE----------- 120 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + K + +++L++ I S N + E G+ I I D + MF +S Sbjct: 121 ---VVDKSRHEMEELSRIIMQITSAY---NAQSNLQMEVVPQGLRILIQDDQQRDMFQRS 174 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A++ L Sbjct: 175 SAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLYNNWNLSGERALMAHKAL 234 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + G+ E R+ +I+ A L +DP+ + NRRI+I+V + Sbjct: 235 VNGGLDEGRVLQINTMADQMLLDPTDPLAAKNRRIEIMVLTKTA 278 >gi|238762341|ref|ZP_04623312.1| Lateral flagellar proton motor protein B [Yersinia kristensenii ATCC 33638] gi|238699326|gb|EEP92072.1| Lateral flagellar proton motor protein B [Yersinia kristensenii ATCC 33638] Length = 302 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 141/344 (40%), Gaps = 67/344 (19%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M SH Q IIK+ + + G+WK+ +ADF +MA F+V+WI+ ++ Sbjct: 1 MRSHA----RGGQTTIIKRSARKRHSGGHSGAWKVAFADFTLAMMALFMVLWIVGVVSEE 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 ++ I N + IF +Q+ S++K Sbjct: 57 ERQEIVAQLN---------GQTIFSQQSFISIPSKSK----------------------- 84 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 +S GK+ K T ++ + P Sbjct: 85 ----------------------SGGGKFSNSIDGKEQAKETKSNLAVEVPD-----PEQS 117 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + K +K +++L++ I S A + E G+ I I D + MF +S Sbjct: 118 LEDVVDKSRKEMEELSRIIMQITSAYDAQ---SNLQMEVVPQGLRILIQDDKQRDMFQRS 174 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A++ L Sbjct: 175 SAVLTPFFGRLLAELAPAFNEMDNKIIITGHTDASRYRDQVMYNNWNLSGERALMAHKAL 234 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +K G++E R+ +I+ A L ++P+ + NRRI+I+V + Sbjct: 235 VKGGLTEGRVLQINAMADQMLLDPAEPLAAKNRRIEIMVLTKTA 278 >gi|146305234|ref|YP_001185699.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145573435|gb|ABP82967.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 313 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 123/345 (35%), Gaps = 63/345 (18%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G + E II+K++ + G+WK+ +ADF +MA F+V+WII + Sbjct: 1 MRKRGGEEHE----IIVKRRSKKGGHDEHGGAWKVAFADFTMAMMALFMVLWIIQPQNQQ 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +A L+ GIFD + V + Sbjct: 57 QSRADADQLT---NPLVEGGAGIFDGSSRTPLDLDG------------VPVQVSPRKDRD 101 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + E+ L Q E + + + L ++ E Sbjct: 102 NQARTPQEDPGATLGEGQPGEPRRPHYAEPGQMQELAELLEQLALQLDAEA--------- 152 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + G+ I I D MF + Sbjct: 153 ---------------------------------NIEVQVVPQGLRILIKDDAQRFMFSRG 179 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQV 298 S+ P +LQ++ +LA + I GHTD++P+R +NW LS DRA A V Sbjct: 180 SARLDPHFEKLLQRLAGILAKVDNHLIISGHTDSTPYRGVVGGYNNWNLSGDRALRARNV 239 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+++G+ + +++ A + SDP N ANRRI++L+ Q Sbjct: 240 LVEAGLPTSAVLQVTAQADGMPLLPSDPQNGANRRIELLLLTSQA 284 >gi|21244419|ref|NP_644001.1| flagellar motor protein MotB [Xanthomonas axonopodis pv. citri str. 306] gi|21110081|gb|AAM38537.1| chemotaxis MotB protein [Xanthomonas axonopodis pv. citri str. 306] Length = 380 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 140/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP S ++ Sbjct: 63 R-----------------NPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|114705809|ref|ZP_01438712.1| flagellar motor protein [Fulvimarina pelagi HTCC2506] gi|114538655|gb|EAU41776.1| flagellar motor protein [Fulvimarina pelagi HTCC2506] Length = 407 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 158/395 (40%), Gaps = 60/395 (15%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 + + Q II+ ++ ++ G WKI +ADFMT +MAFFLVMW+ N+TD+ T+ Sbjct: 12 SEAGHRDHQEIIVVRRRGGGHDEHHGGVWKIAFADFMTAMMAFFLVMWLTNSTDEATRTQ 71 Query: 65 IEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNK-------------------------- 97 + QYFNP + ASKG+ + Q E +N+ Sbjct: 72 VAQYFNPIQLTDSTPASKGLKERQAQSEVEDENQGLVEEEIVGKSGGQPLAGDETGGEEQ 131 Query: 98 --------IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 + I + G + + + QS ++ Sbjct: 132 ALFRDPYAVLAEIAANSVSTGSGDNEGEPDGTGLTGLNGGDAYRDPFDPQSWQLSPNMRE 191 Query: 150 DSEKGKDLCKSTD-----LEKSINKEENYFLPPLSKEKILAMKRK--------------- 189 + DL + + E + E +A K Sbjct: 192 SGGELDDLPPAEFKTAVLPPEGTEASETESSAEETGETTVAAKAATGAETDLETEAETAE 251 Query: 190 ----KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 R DL I + L+ + + + V G++IS+ D ++ MF S+ P Sbjct: 252 AAATSRTADLKSDIEAELADM-GEGVPSQVEVSEGEGGLMISLADDFDSGMFSVGSAKPN 310 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +++KI VL I IRGHTDA PF + DNWRLS RA+ AY +L + G+ Sbjct: 311 GAAVQMMEKIANVLKTRNGRIIIRGHTDARPFTSENYDNWRLSTARAHMAYYMLTRGGLG 370 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +R+ I GFA + K A +P NRRI+IL+ + Sbjct: 371 AERVESIEGFADRQPKDAENPEADINRRIEILLVE 405 >gi|241761142|ref|ZP_04759231.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374761|gb|EER64222.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 326 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 59/340 (17%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +KN+ + II+KK + ++ G+WK+ YADF+T +MAFFL++W++ AT++ Sbjct: 1 MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +K I YFNP S+ + + + Sbjct: 61 ERKGIADYFNP--------------------------------------SLTPESAAGSD 82 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++I + + + K D+ Sbjct: 83 GGMGFLKGDSITAPQDMPTHSKLAPNGQKLVAKNPDVIAQA------------------- 123 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++I+ ++R + L + + + + + + V TR G+ I ++DQ + MF Sbjct: 124 KEIIKQNDRQRFEKLREMLEEHMKKDPSLARLQQSVRLVETREGLRIDLVDQSDFAMFTL 183 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298 + +P ++ ++ V+ +I +RGHTDA P+ + +NW LS RA + + Sbjct: 184 GTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYASGQNVNNWTLSAARADATRRG 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L+ GV +R +I G A + + M+ NRR+ I + Sbjct: 244 LIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSITL 283 >gi|87121902|ref|ZP_01077787.1| flagellar motor protein [Marinomonas sp. MED121] gi|86162700|gb|EAQ63980.1| flagellar motor protein [Marinomonas sp. MED121] Length = 304 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 128/326 (39%), Gaps = 62/326 (19%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II++ + ++ G+WKI ADF +MAFFLVMWIIN AI+ YFN Sbjct: 8 IIRRVKKVKKGGHHGGAWKIALADFALAMMAFFLVMWIINVASPQELAAIQGYFNDPKGM 67 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + +G + K ++L+ N+ Sbjct: 68 STAGYSN----------------------------NPIDLGGSPAKSTERKLDINLPDPG 99 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + Q+ + K ++ + + DL Sbjct: 100 SVQRPDSVKEDANSHRDQVAE---------------------------------QEQADL 126 Query: 196 AKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 A + G V + + + + E T GI ++++D++N PMF + S +P+ + + Sbjct: 127 AAALGKKFEGEKVFEAVKENLQIEITPDGIRVTLLDKQNKPMFAQGSGRLMPDFELAMVN 186 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 IG+VL+ + + GHTD+S + NW LS RA A ++L + G + R ++ G Sbjct: 187 IGQVLSGLNNKLVVSGHTDSSAYSFAGLGNWELSAMRANEARRLLREGGAGDTRFVQVMG 246 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 + +DP NRR+ +L+ Sbjct: 247 LSDTAPYDRTDPAAGINRRVSVLLLT 272 >gi|254512283|ref|ZP_05124350.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11] gi|221535994|gb|EEE38982.1| chemotaxis protein MotB [Rhodobacteraceae bacterium KLH11] Length = 279 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 123/332 (37%), Gaps = 58/332 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N IIIKKK ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 4 QTNVAPIIIKKKRVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTETQRKGLADY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P I N V + + Sbjct: 64 FSP---------------------------------TIPLNPV------SGGGDGAFGGD 84 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N + N +++K + E++ Sbjct: 85 NMFSENTMVMDGSGASNRNPTEAKKARGSTGVDAQGGGKGAFEDFSSLE----------- 133 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 A+ + T LV+D ++K ++ T G+++ + + P+F+ S P Sbjct: 134 -------AQLLGRTGESLVSDEMLKHIVTRVTDEGLVVELFSTEDQPLFESGSDKPTQMM 186 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + T I++ GH ++P W LS RA Q+L GV R Sbjct: 187 RALTLLVARSSDLVTNSIAVEGHVRSAPVVLAHNPTWDLSTTRAQITRQLLQNKGVQPQR 246 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + +++G A + +PM N R++I+ Sbjct: 247 LVRVAGHADREHAL-ENPMAVRNDRVEIIFLR 277 >gi|294624638|ref|ZP_06703310.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601073|gb|EFF45138.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 383 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +NP S ++ Sbjct: 63 -----------------RNPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|297538877|ref|YP_003674646.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297258224|gb|ADI30069.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 311 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 145/337 (43%), Gaps = 59/337 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +E + II+K K+ ++ G+WKI YADF+T +MAFFL+MW++ +T + K Sbjct: 3 EERVRPIIVK-KIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTSKEQK------ 55 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI D N P + Sbjct: 56 ------------AGISDYFNTPLMVALTG------------------------------- 72 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 S++ T+ S + K + + + SI+ EE + E+ +K Sbjct: 73 GTAVGASDTLIKGGGGKDFTKKSGQVKKIDGADGKKTSIDAEEAKK----ALEQAEKVKL 128 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ + + K I +L + T G+ + I+D++N MF+ S + P Sbjct: 129 EELKKKIEKAID---DSPTLSKFKNQLLLDITSDGLRVQIVDEQNRAMFNSSKAEMQPYA 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +LQ++G+ L IS+ GHTDA+P+ N NW LS DRA ++ + L+ G+ E Sbjct: 186 KQILQELGKTLNDVPNKISLSGHTDATPYPNGEKSYSNWELSSDRANASRRELVAGGMDE 245 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++ G + L +P ++ NRRI I++ ++Q Sbjct: 246 TKLLRVVGLSSASLFNKENPFDATNRRISIIIMNKQA 282 >gi|260752895|ref|YP_003225788.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552258|gb|ACV75204.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 326 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 59/340 (17%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +KN+ + II+KK + ++ G+WK+ YADF+T +MAFFL++W++ AT++ Sbjct: 1 MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +K I YFNP S+ + + + Sbjct: 61 ERKGIADYFNP--------------------------------------SLTPESAAGSD 82 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++I + + + K D+ Sbjct: 83 GGMGFLKGDSITAPQDMPTHSKLAPNGQKLVAKNPDVIAQA------------------- 123 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++I+ ++R + L + + + + + + V TR G+ I ++DQ + MF Sbjct: 124 KEIIKQNDRQRFEKLREMLEEHMKKDPSLARLQQSVRLVETREGLRIDLVDQSDFAMFTL 183 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298 + +P ++ ++ V+ +I +RGHTDA P+ + +NW LS RA + + Sbjct: 184 GTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYASGQNVNNWTLSAARADATRRG 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L+ GV +R +I G A + + M+ NRR+ I + Sbjct: 244 LIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSITL 283 >gi|56551498|ref|YP_162337.1| OmpA/MotB domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543072|gb|AAV89226.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 326 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 59/340 (17%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M +KN+ + II+KK + ++ G+WK+ YADF+T +MAFFL++W++ AT++ Sbjct: 1 MARKSNKNEPEIRPIIVKKIIDEGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATNEK 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +K I YFNP S+ + + + Sbjct: 61 ERKGIADYFNP--------------------------------------SLTPESSAGSD 82 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++I + + + K D+ Sbjct: 83 GGMGFLKGDSITAPQDMPTHSKLAPNGQKLVAKNPDVIAQA------------------- 123 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++I+ ++R + L + + + + + + V TR G+ I ++DQ + MF Sbjct: 124 KEIIKQNDRQRFEKLREMLEEHMKKDPSLARLQQSVRLVETREGLRIDLVDQSDFAMFTL 183 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQV 298 + +P ++ ++ V+ +I +RGHTDA P+ + +NW LS RA + + Sbjct: 184 GTENMVPAAQKLIAEVARVIKDVPNMIIVRGHTDALPYASGQNVNNWTLSAARADATRRG 243 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L+ GV +R +I G A + + M+ NRR+ I + Sbjct: 244 LIAGGVDINRFDRIEGVADREPYVPENRMDPRNRRMSITL 283 >gi|330821029|ref|YP_004349891.1| OmpA/MotB [Burkholderia gladioli BSR3] gi|327373024|gb|AEA64379.1| OmpA/MotB [Burkholderia gladioli BSR3] Length = 307 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 79/331 (23%), Positives = 121/331 (36%), Gaps = 69/331 (20%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 ++++ ++ G+WKI YADF+T +MAFFL+MW+ G Sbjct: 20 VVRRVRKNAHEGHHGGAWKIAYADFVTAMMAFFLLMWL------------------LGST 61 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 KGI D N P + L Sbjct: 62 SKYDRKGIEDYFNTP----------------------------------------LSTLL 81 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + + + G+DL D N + + RL L Sbjct: 82 GTHADSNGTARSSVLQAGGQDLSDRRDG--------NGHAASAPAAPAVDAEDAARLSRL 133 Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +++S+ + + TTR G+ I I+D R+ PMF S+ +L + Sbjct: 134 RQQLSTLVEENPQLRAFKDQIRLSTTREGLRIEIVDSRSRPMFATGSARLEDYASDILFR 193 Query: 255 IGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 IG +L +SI GHTDA P+ NW LS DRA +A + L+ + ED++ +I Sbjct: 194 IGTLLNQVDNRVSIAGHTDAVPYSGGIAGYSNWELSSDRANAARRALVAGHLREDKLLQI 253 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G A NRRI ILV ++Q Sbjct: 254 RGLADVLPLDQGAADAEVNRRISILVLNKQA 284 >gi|187478167|ref|YP_786191.1| flagellar motor protein MotB [Bordetella avium 197N] gi|115422753|emb|CAJ49281.1| chemotaxis protein [Bordetella avium 197N] Length = 324 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 125/334 (37%), Gaps = 68/334 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+ +++++K ++ GSWKI YADF+T +MAFFLVMW+++ + K I YF Sbjct: 5 NNHRVVVRRK-RSSAKAHHGGSWKIAYADFITAMMAFFLVMWLVSIVPREELKGIADYFR 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + +T E + + + G + + Sbjct: 64 MPLRVALTGGPNSSAETSAIPGGGSDPLRSK--------------GEVRRADGNRVEAQP 109 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + E K L + L Sbjct: 110 DADRRDRHRLESLKRRLEAVIDNSPVLKNFRP---------------------------- 141 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+ D +G+ + +N PMF S+ P Sbjct: 142 --------------QLLIDLTTEGLRIQIVD---------SQNRPMFATGSAQVQPYMRD 178 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+++G VL +SI GHTDA+ + R A NW LS DRA ++ Q L+ G++E + Sbjct: 179 ILRELGPVLNDLPNKVSISGHTDATQYARRERAYSNWELSTDRANASRQELVAGGMTEGK 238 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +I G A + DP + NRRI ++V + + Sbjct: 239 VMRIQGLASSMSIVKDDPYAAVNRRISLVVLNEK 272 >gi|226941125|ref|YP_002796199.1| flagellar motor protein MotB [Laribacter hongkongensis HLHK9] gi|226716052|gb|ACO75190.1| MotB [Laribacter hongkongensis HLHK9] Length = 293 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 74/336 (22%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 E+ + II+K+ + ++ G+WKI YADF+T +MAFFL+MW++++ T I +Y Sbjct: 3 DESQRPIIVKR-IKKGHGGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVSQGTLAGISEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K ++ G D + + + +T+++ +K N+++Q +R Sbjct: 62 FKTPLKVALSGGDGSGDATSAIK---------GGGQDLTRSAGQVKRTYMNEERQRERQ- 111 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 L L + +A++ Sbjct: 112 ---------------------------------------------VLSKLQQRISMAIES 126 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L+ ++ ++ +G+ + +N PMFD S+ LP T Sbjct: 127 NPVLRKYKNQLLLEMTP-------EGLKVQIVDE---------KNRPMFDSGSANLLPHT 170 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L ++G++ +S+ GHTDA+P+ NW LS DRA +A + L+ G+ + Sbjct: 171 KDILHELGKMFNDVPNRLSVSGHTDATPYAGGERGYSNWDLSADRANAARRELLAGGMQD 230 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +I ++ G + +N NRRI I+V ++Q Sbjct: 231 QKILRVVGLGSANPLDKQNAVNPINRRIAIVVLNKQ 266 >gi|294667303|ref|ZP_06732523.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602975|gb|EFF46406.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 387 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +NP S ++ Sbjct: 63 -----------------RNPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KRL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 KRLEALMQDLREAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|238795043|ref|ZP_04638637.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC 29909] gi|238725644|gb|EEQ17204.1| hypothetical protein yinte0001_4570 [Yersinia intermedia ATCC 29909] Length = 388 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 73/328 (22%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++K+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +YF K Sbjct: 2 VRKRKAKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQQLTQIAEYFRTPLKVA 61 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +T+ +P + Sbjct: 62 LTSGDKSSSSSSPIPGGGDDP--------------------------------------- 82 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +++ ++ K D E+S ++E Y L L ++ ++ RL+ L Sbjct: 83 --------------TQQVGEVRKHIDSEES--RKEEYRLNKLREKLDQLIESDPRLRALR 126 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + L ++ + + I IID +N PMF S+ P +L+ I Sbjct: 127 PHL---LINMMEEGL-------------RIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA 170 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L IS+ GHTD P+ N NW LS DRA ++ + L+ G+ E ++ ++ G Sbjct: 171 PILNDIPNKISLSGHTDDLPYANGERGYSNWELSADRANASRRELLVGGLDEGKVLRVVG 230 Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342 A + NRRI ILV ++Q Sbjct: 231 MASTMRLKEQPGDDPVNRRISILVLNKQ 258 >gi|78049371|ref|YP_365546.1| flagellar motor protein MotB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926421|ref|ZP_08187746.1| flagellar motor protein [Xanthomonas perforans 91-118] gi|78037801|emb|CAJ25546.1| flagellar motor protein MotB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543210|gb|EGD14648.1| flagellar motor protein [Xanthomonas perforans 91-118] Length = 385 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E +II++ + ++ G+WK+ +ADF+T +MAFFLV+W++ AT + + AI +YF Sbjct: 3 EAKSTVIIRRVKKVQGGGHHGGAWKVAFADFVTAMMAFFLVLWLMAATTKEQRAAISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +NP S ++ Sbjct: 63 -----------------RNPSPLSGKSP-------------------------------- 73 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 S ++ D+ K E ++ S+ K K Sbjct: 74 ---APSPGMNGPGGASTSMIKLGGTADMAKGQKDEMGRKRDNAADTDVDSRA-----KDK 125 Query: 190 KRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +RL+ L + + + A + +L + T G+ I I+D++N PMFD P T Sbjct: 126 RRLEALMQDLKEAIDKSQALEPFKDQLLLDLTPDGLRIQIVDKQNRPMFDIGRDQLKPYT 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + +L+++ + ISI GHTD + + + NW LS DRA +A + L+ G+S+ Sbjct: 186 VAILRELSSFINQVPNHISITGHTDTTAYSSDAGYTNWELSADRANAARRALVAGGMSDA 245 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++++ G + L +DP N NRRI I+V + Sbjct: 246 KVTRVVGLSSSVLFDKTDPQNPINRRISIVVMTQDA 281 >gi|13446371|gb|AAK20927.1| LafU [Aeromonas hydrophila] Length = 315 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 135/334 (40%), Gaps = 48/334 (14%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N + IIIK++ + P G+ K+ +ADF +MAFF+V+WI+ + + ++ + + Sbjct: 2 RNHEQIIIKRQQRRNSAPKGGGACKVAFADFTLAMMAFFMVLWILAVSSQEEREVVARRL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + ++M + FD +N P +DE K Sbjct: 62 RDY--SIMDSEANPFDIRNSPYPVDLGGNLSVLDELSPK--------------------- 98 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 E+G+ + K + +SI + + ++ + Sbjct: 99 --------------------FVEEGQRMPKHMERNRSIFS--DGASGGYENLLVGKIEGE 136 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +++ LA ++ + + R G+ I I D M+ + S+ P Sbjct: 137 AQMKQLAGSLARW---PIRCKSRTTLSCNWYRKGLRILIRDDDEREMYSRGSARISPFFR 193 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + + + I GHTD++PF NW LS DRA A +VL+ G+ +R+ Sbjct: 194 HMLMALAPIFQRVENRVMISGHTDSTPFAGDNYSNWELSSDRAMMARRVLLAGGMPPERV 253 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++ + L+ +DP S NRRI++LV Q Sbjct: 254 GQVAAMSDTMLENTADPRGSQNRRIELLVMTSQA 287 >gi|262273510|ref|ZP_06051324.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] gi|262222488|gb|EEY73799.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] Length = 340 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 145/335 (43%), Gaps = 44/335 (13%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + IIIKKK D ++ G+WK+ +ADF +MAFF+V+WI+ T + ++ I+ Sbjct: 3 HDKQHVIIIKKKKHGDHDDHHGGAWKVAFADFAIAMMAFFMVLWIMEITSKEEREEIQ-- 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 + + + +FD +N P ID + +N ++ + T++ Sbjct: 61 YRLQQSTIFESIDNLFDIRNSP-----FPIDFGGEASPFENPINSTLSGTSE-------- 107 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 NSL +G+ + E +++ E +L Sbjct: 108 --------------LGNSLHEQVPQGEKGNNAGQGENAMSVMEGQYL------------N 141 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +L LA + ++ L A ++ + + G+ I I D + MF + S+ P Sbjct: 142 AAQLSGLAIALKEIVASLDA---MENIHLDVVPQGLRIQIQDSKRNVMFQRGSAQMTPFF 198 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + L + I GHTD++ F A NW LS DRA A QV++ SG+ + + Sbjct: 199 EDILYALSPKLGKIQNRLIISGHTDSTVFSTQAYSNWELSGDRALKARQVMVGSGLPQQQ 258 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + ++ A L +DP + NRRI+I+V ++ Sbjct: 259 VLQVVAMADRTLLDEADPQSGKNRRIEIMVLTKEA 293 >gi|170748396|ref|YP_001754656.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170654918|gb|ACB23973.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 286 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 55/326 (16%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II KKV ++ G+WKI YADF+T +MAFFL+MW+I+ T + K + +YF+P + Sbjct: 4 IIIKKVKKAGHAHHGGAWKIAYADFVTAMMAFFLLMWLISMTTQEQKIGLAEYFSPAALS 63 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 T+ G + + S + S + ++ + + ++ Sbjct: 64 PATSGAGGILYGTALDTAGNKP---STPRDAERGSAEREVTARPTSPGLTSELDASRPVA 120 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N Q + SL + + D+ + Sbjct: 121 NVQANWSAIASLRQALQTMPDIAE------------------------------------ 144 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + K ++ E T+ G+ +S++DQ MF + S P T VL+ + Sbjct: 145 ---------------LSKNIVIEPTKEGVNVSLVDQDGRSMFREGSVEPYERTRRVLEAL 189 Query: 256 GEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L +SI G+T A P A + W LS RA + ++L +GV D S +SG Sbjct: 190 APALRRMPNRLSITGYTAVARPGSARAGEPWSLSAGRALAVREILSGAGVPNDNFSAVSG 249 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 +P + NRR+ I + + Sbjct: 250 RGDTEPVFPDNPYLAPNRRVTITLLN 275 >gi|315499937|ref|YP_004088740.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48] gi|315417949|gb|ADU14589.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48] Length = 300 Score = 212 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 79/309 (25%), Positives = 135/309 (43%), Gaps = 44/309 (14%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW+IN T + KK + YF P + T+ G Sbjct: 25 AWKVAYADFVTAMMAFFLLMWLINTTSPEQKKGVADYFAPASVSQTTSGSGGILAGTAIG 84 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 R Q+ +E+ + Q + + S Sbjct: 85 RDGVK-----------------------QEGSMAFIEHMAPEAPDVQDRDGTAKNAADLS 121 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 + ++ +L + + K E ++ A++ L +L+K Sbjct: 122 QTPEE-----ELREELQKREEASFRSAAESLRQALQDMPELAELSK-------------- 162 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 +L + T G+ I +IDQ MF+ +S+ P ++L+ + +V+ ISI GH Sbjct: 163 --NILVDQTPEGLRIQLIDQEGRAMFNANSTQPNERARLLLRAVAKVVNQLPNRISITGH 220 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 T +P + +W+LS DRA ++ QVL +GV +DR++++SG A DP + N Sbjct: 221 TTGTPGMGQSDKDWKLSADRADASRQVLQGAGVDQDRVAQVSGKAAKEPLYPDDPTLAGN 280 Query: 332 RRIDILVED 340 RRI I++ Sbjct: 281 RRIAIILLR 289 >gi|308050006|ref|YP_003913572.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307632196|gb|ADN76498.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 328 Score = 212 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 129/333 (38%), Gaps = 44/333 (13%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + ++++ + G+WK+ +ADF +MA FLV+W++ D + +I Q Sbjct: 3 GHEVVVVRSRSLGGKRAKAGGAWKVAFADFTLAMMALFLVLWLVQVADKQERASIVQALT 62 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 G+ L+ +S G + N P L +D ++ + T ++ + N Sbjct: 63 --GETLLESSSGGSWDSNRPHI-------LELDGTLSMTEAVMPATGTGVQRAGPAMVNQ 113 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 I + L+ ++ + Sbjct: 114 IPKGERGASAGQGDT--------------------------------LTSLLPGPVETQA 141 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ LA++ ++ I V + G+ I I D MF + SS P Sbjct: 142 QLEVLAREAGKIIAQ---SEIADNVAIQVVPQGLKILIRDNLQQFMFARGSSRMTPYFED 198 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L + +L + + GHTD++ FR+ NW LS +RA A + L GV ++ Sbjct: 199 LLFSLAPLLKQVQNPLMVSGHTDSTHFRSNDSSNWELSSERALEARRALEFGGVGRNQFF 258 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + G A SDP +SANRRI+++V + Sbjct: 259 NVVGMADQVPVEPSDPRSSANRRIELMVLTHKA 291 >gi|317403796|gb|EFV84276.1| chemotaxis protein MotB [Achromobacter xylosoxidans C54] Length = 329 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 68/334 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+ ++I++K + ++ GSWKI YADF+T +MAFFLVMW+I+ + Sbjct: 5 NNHRVVIRRK-KVHGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREEL-------- 55 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 KGI + P R + S E Sbjct: 56 ----------KGIAEYFRMPLRVALTGGPSSSAET------------------------- 80 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + G+D ++ E+ P E+ + + Sbjct: 81 -----------------SAVPGGGRDPLRNDGDERRAQGNRVEAQPKGDAER----RDQH 119 Query: 191 RLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL++L K++ + + V + +L + T G+ I IID +N PMF + P Sbjct: 120 RLENLKKRLENVIENSPVLKSFRPQLLIDMTTEGLRIQIIDNQNRPMFATGRAEVQPYMR 179 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+++G VL +SI GHTDAS + A NW LS DRA ++ Q L+ G++E Sbjct: 180 DILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMNES 239 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++ +I G + + DP + NRRI ++V ++ Sbjct: 240 KVMRIQGLSSSMSLVKDDPYAAVNRRISLVVLNQ 273 >gi|332187888|ref|ZP_08389621.1| ompA family protein [Sphingomonas sp. S17] gi|332012049|gb|EGI54121.1| ompA family protein [Sphingomonas sp. S17] Length = 297 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 52/344 (15%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M E + +I+KK +A ++ G+WK+ YADF+T +MAFFL++W++ AT + Sbjct: 1 MARAPHGKNEPPKIVIVKKIIADGHGGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEK 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +K I YF P + + G K + V+ + G Sbjct: 61 QRKGIADYFAPTLLDTKSVGVGGGVLNGGAGVGRMQKDSSTAIVQTLVTRVNGQGGDKPG 120 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 L N + + + K + Sbjct: 121 TGNKGSLRNPDALARDQKTFDAVK-----------------------------------R 145 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E + M+ L+ LA++ V F T +G+ I ++D + MF Sbjct: 146 ELLRKMEVTPELKKLAQQ----------------VRFIPTDSGLRIDLVDNADYSMFSMG 189 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL 299 ++ P ++ I + +A I IRGHTD+ P+ + A +NW LS RA + + L Sbjct: 190 TTSLEPAASQLIGTIAKTVADVPNTIMIRGHTDSVPYGDPRAMNNWMLSSGRAEATRRRL 249 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ E R +I G A I +P + NRR+ I + R+G Sbjct: 250 AAGGLPESRFERIEGVADREPMITGNPSDPRNRRVAITLLYRKG 293 >gi|293607844|ref|ZP_06690158.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553] gi|292813756|gb|EFF72923.1| chemotaxis protein MotB [Achromobacter piechaudii ATCC 43553] Length = 340 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 68/333 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+ ++I++K + ++ GSWKI YADF+T +MAFFLVMW+I+ + K Sbjct: 16 NNHRVVIRRK-KVKGGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELK------- 67 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 GI + P R + S E T+ R Sbjct: 68 -----------GIAEYFRMPLRVAITGGPSSSAE-------------TSAVPGGGRDPLR 103 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 Q ++ D+E+ + + Sbjct: 104 SEGDVRRGQGNRVESQPMGDAER---------------------------------REQH 130 Query: 191 RLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL++L K++ + + V + +L + T G+ I IID +N PMF + P Sbjct: 131 RLENLKKRLENVIETSPVLKSFRPQMLIDLTTEGLRIQIIDNQNRPMFATGRAEVQPYMR 190 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+++G VL +SI GHTDAS + A NW LS DRA ++ Q L+ G++E Sbjct: 191 DILRELGPVLNELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMNES 250 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ +I G + + DP + NRRI ++V + Sbjct: 251 KVMRIQGLSSSMSLVKDDPYAAVNRRISLVVLN 283 >gi|326386939|ref|ZP_08208553.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] gi|326208619|gb|EGD59422.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] Length = 277 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 62/326 (19%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 II KK+ + ++ G+WK+ YADF+T +MAFFL+MW++ AT + +K I YF P Sbjct: 13 IIVKKITVVAAGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTERQRKGIADYFTPTLVK 72 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 S G + + + + TK + + K + + Sbjct: 73 TRQGSAGSYGLLGGSSLTDADTYQFRAGQTGTKTLTIPRDATGGAKDGGSKAKRTAALQE 132 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +Q ++ ++L+ L Sbjct: 133 RLKQ---------------------------------------------KLQASEQLRQL 147 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 AK+ V T GI + ++D N MF ++I P+ + +++ I Sbjct: 148 AKQ----------------VHLTMTPDGIRLDLLDDANFSMFRLGTTILTPQAVELIRAI 191 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + +A +++RGHTD+ ++ +NW LS RA + Q L++ GV E R +I G Sbjct: 192 AQSIAPDQNGLTVRGHTDSLQWKPGDPANNWSLSAGRAEATRQALLRFGVPEKRFRRIEG 251 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 A I +P + NRR+ IL+ D Sbjct: 252 VADQEPLITDNPADPRNRRMSILLMD 277 >gi|16125820|ref|NP_420384.1| chemotaxis MotB protein [Caulobacter crescentus CB15] gi|221234581|ref|YP_002517017.1| chemotaxis motB protein [Caulobacter crescentus NA1000] gi|13422964|gb|AAK23552.1| chemotaxis MotB protein [Caulobacter crescentus CB15] gi|220963753|gb|ACL95109.1| chemotaxis motB protein [Caulobacter crescentus NA1000] Length = 298 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 47/312 (15%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW++N T + K+ I YF P Sbjct: 26 AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAP-------------------- 65 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 ++ + + +++ + + + + Sbjct: 66 -----------------------ASISSTTSGSGGILGGTSLGDDGAKADGKLSVVQQMA 102 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DN 210 + +D+ K ++ N + + LA K + A+ + +L + Sbjct: 103 PEAQDVTKEAQSSETANLDSAS---EQALRDALAKKEQDSFASAAQSLRQSLQDMPELAE 159 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + K +L + T G+ I ++DQ MF ++S P V+L+ + +V+ ++I G Sbjct: 160 LSKQILIDQTPEGLRIQLVDQEGRSMFKENSREPNDRARVLLRAVAKVINQLPNRVTISG 219 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HT A+ F +W LS RA ++ QVL +GV +DR+ ++SG A+ A DP + Sbjct: 220 HTSANAFGKKQDGDWALSAQRADASRQVLRSAGVDDDRVYQVSGKANSEPLYADDPTLAG 279 Query: 331 NRRIDILVEDRQ 342 NRRI I++ + Sbjct: 280 NRRISIVLLREK 291 >gi|296531741|ref|ZP_06894566.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957] gi|296267924|gb|EFH13726.1| chemotaxis MotB protein [Roseomonas cervicalis ATCC 49957] Length = 309 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 131/328 (39%), Gaps = 49/328 (14%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + +IIKK + + G WKI YADF+T +MAFFLVMW++++T + ++ I Q+F Sbjct: 10 RPVIIKKH-HGEHDDEHGGQWKIAYADFVTAMMAFFLVMWLLSSTTESQREGIAQFFTAS 68 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + + G D + N+ D D + G Sbjct: 69 SILDLPSGSGTLDGGRSVLLAGDNRQDALTQVDDGGARQDSQGG---------------- 112 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 +S N P ++ + ++R Sbjct: 113 --------------------------------ESANDGAAAQAAPQQQDAVRDPIERQRF 140 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L ++ + + + E T G+ + I D+ PMF +++ P P +L Sbjct: 141 DALKAELERQMQTDALREFSQNIQLEMTPEGLRLQIFDRDGQPMFAPAATEPTPRLARIL 200 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +G VLA + + GHTDA PF+ NW LS DRA +A + L +SGV R+ ++ Sbjct: 201 EVVGSVLASVPNEVVVSGHTDAQPFQRGNYSNWELSADRANAARRALERSGVRPARMFRV 260 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340 A +A +P + NRRI + V Sbjct: 261 EAKAAVEPLLAEEPNDPRNRRIAVTVLR 288 >gi|163744356|ref|ZP_02151716.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus indolifex HEL-45] gi|161381174|gb|EDQ05583.1| outer membrane porin, OmpA/MotB family protein [Oceanibulbus indolifex HEL-45] Length = 309 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 32/330 (9%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + ++ IIIK+ A ++ G WK+ YADFMT +MAFFL++WI+ A+D++ + + Y Sbjct: 3 DKKNELIIIKRYDAEGGHAHHGGGWKVAYADFMTAMMAFFLLLWILAASDEEKLRGLANY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F P + ++S D + + + + +T K+ Sbjct: 63 FTPTISDGGSSSDAAADLR----------------PLMAAGVMTGAVDNTGNVKKPTFGR 106 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +N + +S+ + + ++ + + + +E A +R Sbjct: 107 DNPMMVFDSRLRDKPSEVVVEYADAPEPAAAADPATVAAVEE--------------AERR 152 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K + +A+ I+ + S ++ + V E + + + ++DQ +F + S+ P+ Sbjct: 153 KSEIDRMAEDIAERITSDGELSDLARNVRLEKSNGALTVQVLDQDERSLFTRGSAEVTPK 212 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 T +L IG+V+A + + I GHTDA+ F N NW LS DRA + + LM +G++ Sbjct: 213 TRELLLAIGDVIAEQNQPVEIIGHTDAATFGANNGYTNWELSADRANATRRTLMAAGING 272 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDI 336 R ++SG A + DP+ + NRRI I Sbjct: 273 ARFMRVSGVADTQPINTIDPLAAENRRISI 302 >gi|260429438|ref|ZP_05783415.1| OmpA/MotB [Citreicella sp. SE45] gi|260420061|gb|EEX13314.1| OmpA/MotB [Citreicella sp. SE45] Length = 291 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 135/333 (40%), Gaps = 53/333 (15%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N +IIK+K ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Y Sbjct: 11 DSNVAPVIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 70 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P R S E + +V ++G+ Sbjct: 71 FSPTIAV---------------SRMSGGGDGTLGGESVFTEAVLPRVGTGATSLNPMAQN 115 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 Q E K ++E + + Sbjct: 116 RARGSSDPGQARETGK----------------------------------AEEPGASDED 141 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K L+DL + ++ DN+++ ++ T G+++ + + + +FD++ + P+P Sbjct: 142 LKALEDLL--MGRGGETMIDDNLMRHIVTRVTDEGLVVELFETEDARLFDETGA-PMPLL 198 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + I V T +++ GHT A P +W +S RA Q+L+ G+ R Sbjct: 199 RDLAGVIARVSRLVTNPLAVEGHTTAFPIVLARDPSWDVSTRRADDFRQLLLAGGLDRKR 258 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 I +++ A S+PM++ N R++++ + Sbjct: 259 IDRVTAHADREP-SQSNPMDARNNRLEVIFLRK 290 >gi|94312620|ref|YP_585829.1| flagellar motor rotation proteinOmpA/MotB [Cupriavidus metallidurans CH34] gi|93356472|gb|ABF10560.1| OmpA/MotB, protein that enables flagellar motor rotation [Cupriavidus metallidurans CH34] Length = 325 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 65/330 (19%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+ KK P+ SWKI YADFMT +MA FLV+W+++++ + +YF K Sbjct: 10 IVIKKAKSHAKPHGNHSWKIAYADFMTAMMALFLVLWLLSSSSPKVLVGVAEYFRTPLKV 69 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + + S + + +T ++ TN Sbjct: 70 AIAGG---------DKSSLSTSVIPGGGKDVTAKDGEIMKAQTND--------------- 105 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + D ++ ++ E+ L L KKRL+ + Sbjct: 106 -----------------------PAADAQRRRDQIESERLRGL----------KKRLEQI 132 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + + V +L + T G+ I I+D +N PMF S+ P +L++I Sbjct: 133 IE------NNPVLRQFRPQLLLDITSEGLRIQILDTQNRPMFRTGSAAVEPYMRTILREI 186 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 G VL +S+ GHTD++ + NW LS DRA ++ Q L+ G+ E ++ ++ Sbjct: 187 GPVLNELPNKVSLSGHTDSAKYMMGQRAYSNWELSADRANASRQELVAGGMEEGKLLRVL 246 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G A +DP+ NRRI I+V +++ Sbjct: 247 GLADTMPLEKNDPLAPVNRRISIVVLNQRA 276 >gi|296103598|ref|YP_003613744.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058057|gb|ADF62795.1| chemotaxis protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 301 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 72/334 (21%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N +II +K ++ G+WKI YADFMT +MAFFLVMW+++ + D ++ I YF Sbjct: 2 KNVTPVIISRKRKKKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLSQSTDMERELIADYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K M N + S + + + I K ++ G +++R E Sbjct: 62 RMPLKPSMA---------NGDKTSLSDSVIPGGGDDILKRQGEVFKGQIASIDKHKRFE- 111 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 SL + EK + + ++ Sbjct: 112 ----------------SLKQAKEKLQKMIETDP--------------------------- 128 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL + I L+ G+L + T D ++ PMF S +P Sbjct: 129 -RLNNFKSNILLNLTN-------DGLLIQIT---------DSQDRPMFRVGSELPESYMN 171 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSED 307 +LQ + +L +S+ GHTD+ P+ NW LS RA +A +VL++ G++++ Sbjct: 172 GILQALVPLLQELPNALSLTGHTDSLPYAGGDGGYSNWELSAGRANAARRVLVRGGLNDE 231 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 R ++ G A + P ++ NRRI ILV R Sbjct: 232 RFLRVIGTASRMPLENTSPDSAVNRRISILVLSR 265 >gi|290474940|ref|YP_003467824.1| flagellar protein [Xenorhabdus bovienii SS-2004] gi|289174257|emb|CBJ81046.1| enables flagellar motor rotation, linking torque machinery to cell wall [Xenorhabdus bovienii SS-2004] Length = 333 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 121/338 (35%), Gaps = 74/338 (21%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N+ +I KK + GSWKI YADFMT +MAFFLVMW+++ +I Y Sbjct: 2 RANNVTVIRVKKRKKHGEKHCGGSWKIAYADFMTAMMAFFLVMWLLSIASPQELTSIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F + + D NP + + + Sbjct: 62 FRTPLQVAINQGPQSSDSTNPIPGGGD---------------------------EVFQQD 94 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +F S +S K L R ++ L + Sbjct: 95 GEVFRESKLVESNKEKRRLNRLHQQLDQL----------------------------IIT 126 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL++L + + D + +G+ + N PMF S+ Sbjct: 127 DPRLKELRPHL-------LIDMMDEGLRIQIIDR---------ENRPMFMIGSAKVESYM 170 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +LQ I +L +S+ GHTD + N NW LS DRA ++ + L+ G+ E Sbjct: 171 RDILQAIAPILNEIPNKVSLSGHTDNLQYANGQRGYSNWELSADRANASRRELLNGGLDE 230 Query: 307 DRISKISGFAHHRLKIAS-DPMNSANRRIDILVEDRQG 343 +I ++ G A DP NRRI I+V ++ Sbjct: 231 VKILRVVGMASTVSMQKGIDPNAPVNRRISIVVLNKDA 268 >gi|94495402|ref|ZP_01301982.1| flagellar motor component [Sphingomonas sp. SKA58] gi|94424790|gb|EAT09811.1| flagellar motor component [Sphingomonas sp. SKA58] Length = 350 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 59/342 (17%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 N+ + +I+KK + ++ G+WK+ YADF+T +MAFFL+MW++ AT + + Sbjct: 4 KKRGANEPEPRPVIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR 63 Query: 63 KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 KA+ YF P L A S+ + + D K++ G N Sbjct: 64 KALADYFTPTLVELKMA-------------SAGSTGLMGGDSLTGKDNYPTTGGVGNLSI 110 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 R K Sbjct: 111 TIPRDATGTKDQGG---------------------------------------------K 125 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 + +++ + + K + + ++ + K V F TR G+ I +ID+ + MF + Sbjct: 126 AMRAADRQKFESIKKDLEARMNRKGLSRLRKNVRFTETREGLRIDLIDEADFAMFAMGTD 185 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301 +PE ++ ++ VL + +RGHTDA P+ + A +NWRLS RA S Q L Sbjct: 186 RLVPEARALVGEVASVLKTMPNDLIVRGHTDALPYASGKAMNNWRLSSARAESTRQALAD 245 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 SG+ R ++I G A + + + NRR+ I++ +G Sbjct: 246 SGIGNPRFARIEGVADREPFVKDNRYDPRNRRMSIILGWSRG 287 >gi|327478801|gb|AEA82111.1| OmpA/MotB domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 311 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 124/341 (36%), Gaps = 66/341 (19%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M S DK + ++ +I++++ + G+WK+ +ADF +MA F+V+WII Sbjct: 1 MKSR-DKGKAGEREVIVRRRTKKGHGDEHGGAWKVAFADFTLAMMALFMVLWIIQ----- 54 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 N + + E + VD G + Sbjct: 55 --------------------------------PQMNLTNPAFGEQESNPLVDGGAGIFDG 82 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + + + + + R + P Sbjct: 83 TSTSPLELDGVPLRPAPDEPQRPREETARGEGE---------------------TPADGT 121 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + + L L ++++ + L + + G+ I I D + MF + Sbjct: 122 RRYASTAELQALAALMQEVAGQVDALA------NLEVDVVPQGLRILIKDDQQRFMFQRG 175 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVL 299 S++ P +L + VL+ + I GHTDA+P+R DNW LS DRA A VL Sbjct: 176 SAVLNPHFAKLLAVLAGVLSKVENKLIISGHTDATPYRLQSGYDNWNLSGDRALRARNVL 235 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + +G+ + +++ A P + ANRR++IL+ Sbjct: 236 VDAGLPGRSVLQVTAQADVMPLRPEAPEDGANRRVEILLLT 276 >gi|302383636|ref|YP_003819459.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302194264|gb|ADL01836.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 298 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 142/333 (42%), Gaps = 50/333 (15%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +D+ I+IKK + ++ G+WK+ YADF+T +MAFFL+MW+IN TD + K+ I +YF Sbjct: 2 SDRPILIKKVKKVVGGGHHGGAWKVAYADFVTAMMAFFLLMWLINTTDPEQKRGIAEYFA 61 Query: 71 PFGKNLMTASKG-IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + T+ G I + E S++ +S+ E + + Sbjct: 62 PASVSQTTSGSGGILGGTSLGEDGSKSSGSMSVLEQQAPEAPEDAPEDVGTNANLAA--- 118 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +L + I E ++ AM+R Sbjct: 119 ----------------------------ASEEELRQEIAAREAAEFASAAESLRQAMQRM 150 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L +L+K++ + + T G+ I ++DQ MFD++S+ P Sbjct: 151 PELAELSKQL----------------IIDQTPEGLRIQLVDQEGRSMFDQNSARPNARAQ 194 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSED 307 V+L+ I V+ ISI GHT A A +W LS +RA ++ +L +GV D Sbjct: 195 VLLRAIAGVVNRLPNRISISGHTSAVAGSGRASVATDWPLSANRADASRAILQAAGVDAD 254 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ ++G A DP + NRRI I++ Sbjct: 255 RVYSVAGKAGSDPLYPDDPSLAGNRRIAIVLLR 287 >gi|162147455|ref|YP_001601916.1| chemotaxis protein motB (motility protein B) [Gluconacetobacter diazotrophicus PAl 5] gi|209545564|ref|YP_002277793.1| OmpA/MotB domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786032|emb|CAP55614.1| putative chemotaxis protein motB (Motility protein B) [Gluconacetobacter diazotrophicus PAl 5] gi|209533241|gb|ACI53178.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 368 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 143/340 (42%), Gaps = 15/340 (4%) Query: 7 KNQENDQFIIIKKKVAID--DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 KN Q I+I++ D + ++ G+WKI YADFMT +M+FFLVMW++NAT D+ ++ Sbjct: 3 KNDNKQQPILIRRSDGEDSEEGGHSGGAWKIAYADFMTAMMSFFLVMWLLNATTDEQRRG 62 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 I Q+FNP A P I T + V + Sbjct: 63 IAQFFNPMADRDTHAQPTDSMLDVQPSPLWGGSAIRRIKNGDTLDPVQDGAPGARNAPRT 122 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 R + + ++ ++ + G + + + + + Sbjct: 123 VRQDRSSDDITLGLRTRLNPSPPAIVPIGGPQTGAARSVGYIGAGSPAEASAEEAAVEQM 182 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A ++ +QD + V + R I I + D NTPMFD S+ P Sbjct: 183 ASGLRQAIQD----------NPEIRDAASDVSIQIGRDDIRIELRDSNNTPMFDSGSATP 232 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMK 301 +L +I LA E ISI G+TD +P+ + NW LS+ RA A + L++ Sbjct: 233 NRLGKQMLAQIAAWLAPMPEPISIVGYTDGAPYHVGRQWGMSNWTLSVMRADHARETLVQ 292 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +G + I +SG + L + SDP + NRR+ +++ R Sbjct: 293 AGYPDRNILDVSGRSDRDLALPSDPSGAGNRRVVLIMHRR 332 >gi|86136711|ref|ZP_01055289.1| chemotaxis protein MotB [Roseobacter sp. MED193] gi|85826035|gb|EAQ46232.1| chemotaxis protein MotB [Roseobacter sp. MED193] Length = 277 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 59/332 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q IIIKKK ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Y Sbjct: 4 QNGLAPIIIKKKKVSGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P + G + + Sbjct: 64 FSPSIPLSRISGGG---------------------------------------NGAFQGD 84 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + Q + D++K + +D EK+ + + + + Sbjct: 85 SMFTEDIQPQSGTGASDINPMDAQKAQGETGVSDAEKAEEDSKFRAIEEQLQGRGG---- 140 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +V+ + + ++ T G+++ + + +F+ + P P Sbjct: 141 ---------------ESMVSVEMSRHIITRVTDEGLIVELFETDGVSLFEAGGAEPTPLF 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +++ + V A T I+I GH + P W +S RA A +L G+ R Sbjct: 186 RDLVRMVARVSASVTNDIAISGHIQSHPVVLAQNPVWEMSHARANVARTLLESGGMKSSR 245 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 I +I+G A +L + ++PM N R++I++ Sbjct: 246 IHRITGHADRKLAV-TNPMAVRNNRVEIILLR 276 >gi|300697987|ref|YP_003748648.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum CFBP2957] gi|299074711|emb|CBJ54269.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum CFBP2957] Length = 314 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 127/336 (37%), Gaps = 66/336 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPAIK--------------QNMPQPNPSPSPTAQR 107 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + NI S+ K + E + + Sbjct: 108 QRNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +DQ+N PMF +S+ P Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFGNASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGAALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++++ G +D N NRRI I+V + + Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272 >gi|300694372|ref|YP_003750345.1| chemotaxis protein motb (motility protein b), flagellar motor protein [Ralstonia solanacearum PSI07] gi|299076409|emb|CBJ35725.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum PSI07] Length = 314 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 66/336 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + S K ++ +V + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILNGSPAIKQNMPQPNPSPSPTVQRQ------------- 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 N+ S+ K + E + + Sbjct: 109 -RNVRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +DQ+N PMF +S+ P Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGAALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++++ G +D N NRRI I+V + + Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272 >gi|83747601|ref|ZP_00944638.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551] gi|207738644|ref|YP_002257037.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum IPO1609] gi|83725781|gb|EAP72922.1| Probable chemotaxis motB protein [Ralstonia solanacearum UW551] gi|206592012|emb|CAQ58918.1| chemotaxis protein (motility protein b) [Ralstonia solanacearum IPO1609] Length = 314 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 130/336 (38%), Gaps = 66/336 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K ++ +V + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPAIKQNMPQPNPSPSPTVQRQ------------- 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 NI S+ K + E + + Sbjct: 109 -RNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +DQ+N PMF +S+ P Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGSALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++++ G +D N NRRI I+V + + Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272 >gi|17549629|ref|NP_522969.1| flagellar motor protein MotB [Ralstonia solanacearum GMI1000] gi|17431883|emb|CAD18561.1| probable chemotaxis (motility protein b) transmembrane [Ralstonia solanacearum GMI1000] Length = 314 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 66/336 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K Q + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPAIK--------------QNMPQPNPSPSQTVQR 107 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + NI S+ K + E + + Sbjct: 108 QRNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +DQ+N PMF +S+ P Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGVALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++++ G +D N NRRI I+V + + Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272 >gi|34497482|ref|NP_901697.1| flagellar motor protein MotB [Chromobacterium violaceum ATCC 12472] gi|34103337|gb|AAQ59699.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472] Length = 306 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 135/334 (40%), Gaps = 69/334 (20%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + Q I+ KK+ ++ G+WKI YADF+T +MAFFL+MW++ + T I +YF Sbjct: 3 DESQRPIVVKKIKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLGSASQGTLNGISEYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K ++ G D + + N + + G N+ Q Sbjct: 63 KTPLKVALSGGAGAGDATSVIKGGG--------------NDITKQAGQVNKAGAKQE--- 105 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 E ++E L L ++ + + Sbjct: 106 ----------------------------------EVMQKQKEQARLNQLQQKIQQTIDQS 131 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + ++ ++ +G+ + +N PMFD SS LP T Sbjct: 132 ELFKQYKNQLKLEMTP-------EGLKIQIVDE---------QNRPMFDSGSSRMLPHTR 175 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 V+LQ++ L ISI GHTDA PF NW LS DRA +A + L+ G++E+ Sbjct: 176 VLLQQLAPELNQLPNRISISGHTDAKPFGGGQGGYSNWELSADRANTARRELVAGGLTEN 235 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +I ++ G A I SD + NRRI I+V ++ Sbjct: 236 KILRVVGLASANPLIKSDVFSPENRRITIVVLNK 269 >gi|299069796|emb|CBJ41076.1| Chemotaxis protein motB (Motility protein B), flagellar motor protein [Ralstonia solanacearum CMR15] Length = 314 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 66/336 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K Q + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPAIK--------------QNMPQPNPSPSQTVQR 107 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + NI S+ K + E + + Sbjct: 108 QRNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +DQ+N PMF +S+ P Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGVALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMQP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++++ G +D N NRRI I+V + + Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272 >gi|167647023|ref|YP_001684686.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31] gi|167349453|gb|ABZ72188.1| OmpA/MotB domain protein [Caulobacter sp. K31] Length = 299 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 131/311 (42%), Gaps = 44/311 (14%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW++N T + K+ I YF P + T+ Sbjct: 26 AWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAPASISSSTS------------ 73 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + L S + ++ + + + Sbjct: 74 ----------------GSGGILGGTSLGDDGAKADGKMSVIQQMAPEAPDKTTKDGQSST 117 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 D L ++ K+E ++ +++ L +L+K+I Sbjct: 118 SASLDSASEEALRDALAKKEQDSFASAAQSLRQSLQDMPELAELSKQI------------ 165 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + + T G+ I +IDQ MF ++S P ++L+ I +++ I+I GH Sbjct: 166 ----MIDQTPEGLRIQLIDQDGRSMFKENSREPNDRARILLRAIAKIINQLPNRITISGH 221 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 T AS A +W LS +RA ++ QVL +GV EDRI ++SG A+ A DP + N Sbjct: 222 TSASAAGKRADSDWALSAERADASRQVLRGAGVDEDRIYQVSGKANSEPLYADDPTLAGN 281 Query: 332 RRIDILVEDRQ 342 RRI I++ + Sbjct: 282 RRISIVLLREK 292 >gi|254477135|ref|ZP_05090521.1| OmpA/MotB [Ruegeria sp. R11] gi|214031378|gb|EEB72213.1| OmpA/MotB [Ruegeria sp. R11] Length = 278 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 120/311 (38%), Gaps = 60/311 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFF++MW++NAT + +K + YF+P + G Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGG--------- 77 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 ++ Q ++ D+ Sbjct: 78 ------------------------------NGAFNGDSMFTEQIKPQNGTGASDTNPMDA 107 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADN 210 ++ + D ++ +E + LA++++ +V+ Sbjct: 108 QQAQGDTGVQDDQEREQTDET-------------------FRALAEELNGRGGESMVSLE 148 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + ++ T G++I + D +P+F + + P +++ + V I++ G Sbjct: 149 MAQHIITRVTDEGLVIELFDTETSPLFKEGTPEPTLLFRDIIEMVARVTGVVENNIAVGG 208 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HT + P W LS RA +L G RI +++G A +L A +PM + Sbjct: 209 HTRSHPVVIANNPVWELSHARADMTRVMLESGGTKSKRIHRVTGHADRKLTDA-NPMAAR 267 Query: 331 NRRIDILVEDR 341 N RI+I++ + Sbjct: 268 NNRIEIVLLRK 278 >gi|315126001|ref|YP_004068004.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913] gi|315014515|gb|ADT67853.1| chemotaxis LafU protein [Pseudoalteromonas sp. SM9913] Length = 331 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 137/335 (40%), Gaps = 43/335 (12%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + +Q I+IK+ + G+WK+ +ADF +MAFF+VMWI+ T++ ++ I Y Sbjct: 2 ENKNQEIVIKRSRRRATEKPHGGAWKVAFADFTLAMMAFFMVMWIMAITNESEREEIAHY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 ++ IFD QN P +DL + K+ L+ G T + Sbjct: 62 MRT--HSIFDGGPAIFDPQNSP-----FPVDLGGSPSVIKH---LESGITPPDSPKPGMS 111 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + + + L +I+ + + + Sbjct: 112 EVLQVPDGTVEPKAGQGE---------------KLNSAIDSQFEASSELSLLLESIDELS 156 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K+ L + +L E G+ + I D ++ MF++S S P Sbjct: 157 KEEL------------------LKNNLLVEEVPLGLRVIIRDDKHHQMFERSKSQMTPFF 198 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + +G ++ I I GH+DAS F + + NW +S DRA A +V+ G+ + Sbjct: 199 EDLFLYLGGLVKDINNKIIISGHSDASLFIDGSSRNWDISGDRAQQARKVMTMGGMPSSQ 258 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + +++ F+ +R + S NRR+++L+ + Sbjct: 259 VLQVNAFSSNRPLNKENQKASENRRVELLILTKDA 293 >gi|307293778|ref|ZP_07573622.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] gi|306879929|gb|EFN11146.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] Length = 351 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 137/343 (39%), Gaps = 60/343 (17%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 N+ + II+KK + ++ G+WK+ YADF+T +MAFFL+MW++ AT + + Sbjct: 4 KKRGANEPEPRPIIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR 63 Query: 63 KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 K + YF P + S+ + D K + G N Sbjct: 64 KGLADYFTPTLVQVKEG-------------SAGSNGMFGGDSMTAKENYPTTGGQGNLAI 110 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 R + ++G K+ D Sbjct: 111 TIPR-------------------DASGTKDQGGKATKAAD-------------------- 131 Query: 183 ILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + + + + K++ + ++ + + K V F TR G+ I +ID+ + MF + Sbjct: 132 ------RAKFESIKKELEARMARRHGINKLRKNVRFTETREGLRIDLIDEADFAMFAMGT 185 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300 LP+ ++ ++ + + + +RGHTD P+ + +NW LS RA + + L Sbjct: 186 DRLLPQARELVDEVAKTIRTMPNPLIVRGHTDGLPYSSGQTMNNWMLSSARAEATRKALA 245 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 SG+ DR ++I G A D + NRR+ I++ +G Sbjct: 246 ASGIGNDRFARIEGVADREPFAKGDVYDPRNRRMSIILGWSRG 288 >gi|126417355|gb|ABO13880.1| MotB [Ralstonia solanacearum] Length = 314 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 130/336 (38%), Gaps = 66/336 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K ++ +V + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPAIKQNMPQPNPSPSPTVQRQ------------- 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 NI S+ K + E + + Sbjct: 109 -RNIRDESDDAALNKLKQHIMEMIESNPVMNQFK-------------------------- 141 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +DQ+N PMF +S+ P Sbjct: 142 ----------------HQLLIDMTSEGLRIQI---------VDQQNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 LRTILRELGAALNDVPNPISLSGHTDATQYATQNGYSNWELSADRANASRRELIAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++++++ G +D N NRRI I+V + + Sbjct: 237 EKVARVVGLEASVPLDKTDAFNPINRRISIVVLNNR 272 >gi|32490782|ref|NP_871036.1| flagellar motor protein MotB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165988|dbj|BAC24179.1| motB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 326 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 125/335 (37%), Gaps = 72/335 (21%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + +I+ + + ++ GSWKI YADFMT +MAFFLVMW+++ + ++ I YF Sbjct: 2 KKNSPMILIRWKKSQHSGHHGGSWKIAYADFMTAMMAFFLVMWLLSTSTPQQREQIADYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K+ + Q + Sbjct: 62 RIPMKDSV---------------------------------------------QNSSKSS 76 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 Q ++ N + ++L D+ + N ++ Sbjct: 77 ISPIPMPKQGGDNIDNKTNNIKNRERELNHQKDIRRLNKTRYN---------LQQMLRNN 127 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL+D + TL + +G+ E + PMF P Sbjct: 128 PRLRDFQSNMKITL-------VHEGLRIEIID---------SKKRPMFTTGGKEIAPYMR 171 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 +++ + VL IS+ GHTD P+ N NW LS DRA ++ + L++ G+ D Sbjct: 172 YIMRILAPVLNELPNRISLAGHTDNQPYINGERGYSNWELSADRANASRRELIEGGLMND 231 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +I ++ G A+ + +++ RRI I++ +Q Sbjct: 232 KILRVIGMANTMSDVNKHHHHASQRRISIIILTKQ 266 >gi|254473231|ref|ZP_05086629.1| chemotaxis MotB protein [Pseudovibrio sp. JE062] gi|211957952|gb|EEA93154.1| chemotaxis MotB protein [Pseudovibrio sp. JE062] Length = 286 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 119/324 (36%), Gaps = 53/324 (16%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 P W + +AD M++L+ FF+++ + D + + + FG +T Sbjct: 3 GRKKQAPAGAPGWMVTFADLMSLLVCFFVLIISFSVQDKQKLQVVAGSIKDAFGIKQVTK 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G+ + + P R D++ ++ IT Sbjct: 63 RAGVLEIEGVPLRDFMK--DITYEKQIT---------------------------DADFA 93 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +E + E K D+EK A+ ++ Q++ + Sbjct: 94 TESHPEKRKQGPEANTHTTKKADIEKPRQF------------ATAAVSLRQAFQEMPE-- 139 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 I ++ E T G+ I I+DQ M+ + S P T +L K+ VL Sbjct: 140 --------ITEISNNIILEETDEGLNILIVDQEGRSMYPEGSKYPYEITRRLLAKMAPVL 191 Query: 260 AHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A + I GHT + + W LS DRA +A Q+L + G+ + I + G A Sbjct: 192 AKLPNRVRITGHTTTGQLITSPSETGWELSADRANTARQILSEYGLPSNNIHSVVGKADT 251 Query: 319 RLKIASDPMNSANRRIDILVEDRQ 342 +DP +ANRRI IL+ + Sbjct: 252 EPLFPNDPYLAANRRISILLMAEE 275 >gi|294013095|ref|YP_003546555.1| chemotaxis MotB protein [Sphingobium japonicum UT26S] gi|292676425|dbj|BAI97943.1| chemotaxis MotB protein [Sphingobium japonicum UT26S] Length = 351 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 80/337 (23%), Positives = 132/337 (39%), Gaps = 58/337 (17%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 N+ + II+KK V ++ G+WK+ YADF+T +MAFFL+MW++ AT + + Sbjct: 4 KKRGANEPEPRPIIVKKIVVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEKQR 63 Query: 63 KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 K + YF P L S G + D K + G N Sbjct: 64 KGLADYFTPTLVQLKEGSAG-------------SNGMFGGDSMTAKENYPTTGGQGNLAI 110 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 R + ++G K+ D K + KE Sbjct: 111 TIPR-------------------DASGTKDQGGKATKAADRAK---------FESIRKEL 142 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 M R++ ++ L +K + F T G+ I +ID+ + MF + Sbjct: 143 EARMARRQGIRKL----------------LKNIRFTETHEGLRIDLIDEADFAMFAMGTD 186 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMK 301 LP+ ++ ++ + + +RGHTD P+ +NW LS RA + + L Sbjct: 187 RLLPQARELVNEVAATIRTMPNPLIVRGHTDGLPYSAGQTMNNWMLSSARAEATRKALAA 246 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 SG+ DR ++I G A D + NRR+ I++ Sbjct: 247 SGIGNDRFARIEGVADREPFAKGDVYDPRNRRMSIIL 283 >gi|323224726|gb|EGA08995.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 309 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 118/340 (34%), Gaps = 74/340 (21%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT A+ Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMT---------------------AMM 39 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +F +++ K + + I ++ + Q++ Sbjct: 40 AFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGTGLPIAESPIPGGGDDYTQQQGEVE 99 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + NI +++ Sbjct: 100 KQPNI-------------------------------------------------DELKKR 110 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + RL L + + ++ + + + G+ I IID +N PMF S+ Sbjct: 111 MEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVE 170 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303 P +L+ I VL IS+ GHTD P+ N NW LS DRA ++ + L+ G Sbjct: 171 PYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGG 230 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 231 LDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270 >gi|89067516|ref|ZP_01155029.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516] gi|89047085|gb|EAR53139.1| putative chemotaxis MotB protein [Oceanicola granulosus HTCC2516] Length = 270 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 133/330 (40%), Gaps = 67/330 (20%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ++ IIIK+K ++ G+WK+ YADF+T +MAFF++MW++NAT + + Sbjct: 5 SNAPIIIKRKKITGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQR-------- 56 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 KGI D +P + I + +N Sbjct: 57 ----------KGIADYFSP----------------------TIPINRISGGGDGAFGGDN 84 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 IF + QS + +P + E+ + + Sbjct: 85 IFTDNTLAQSGTNPGAT------------------------GDAVPGATAEEAAQVAALE 120 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++++ + + ++AD ++ ++ + T G++I I D P+F ++ P P T+ Sbjct: 121 QIEE--QLLGRGGESMIADEALQHIVTKLTDEGLVIEIFDLDGAPLFAPGTAEPEPVTVE 178 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + VLA +++ GH A P W LS RA ++L SG + +RI Sbjct: 179 LAAVFARVLALVDNDVALAGHVRARPVVVADSRVWPLSTSRATRFRELLEASGQAPERIV 238 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 +++G A + + ++ N R++++V Sbjct: 239 RVTGHADRAPAVR-NAVSLRNNRLEVVVLR 267 >gi|187926231|ref|YP_001892576.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] gi|241665719|ref|YP_002984078.1| flagellar motor protein MotB [Ralstonia pickettii 12D] gi|187727985|gb|ACD29149.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] gi|240867746|gb|ACS65406.1| OmpA/MotB domain protein [Ralstonia pickettii 12D] Length = 315 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 127/337 (37%), Gaps = 66/337 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K ++ +V + Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPALKQNMPQPNPSPSPTVQRQ------------- 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 NI S+ K + E + + Sbjct: 109 -RNIRDESDDAALNKLKQKIAEMVETNPVMSQFKHQ------------------------ 143 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ D +G+ + +N PMF +S+ P Sbjct: 144 ------------------LLIDMTTEGLRIQIVDQ---------QNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGTALNDVPNPISLSGHTDATQYATQHGYSNWELSADRANASRRELVAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++S++ G ++ N NRRI I+V + + Sbjct: 237 EKVSRVVGLEASVPLDKTNIYNPINRRISIVVLNARA 273 >gi|258592514|emb|CBE68823.1| Outer membrane protein, OmpA/MotB family [NC10 bacterium 'Dutch sediment'] Length = 308 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 133/341 (39%), Gaps = 66/341 (19%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ +KN + I+ K ++ G+WK+ YADF+T +MA F+V+WI+ Sbjct: 1 MSEETEKNDNRPRKIV---KKKGGHGGHHGGAWKVAYADFVTAMMALFIVLWIVG-QSKS 56 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK+AI YF S G + S+ + + + ++ T + Sbjct: 57 TKEAIAGYFKDPSNFSKGGSPGGLQSKGSIGVLSKGGDPVVVAQQASQTMSPEGSEDTQK 116 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + +++ L ++ Sbjct: 117 SPED-------------------------------------------KEQDRIHLEEAAE 133 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + ++R LQ L +I E T G+ + +I+ FD Sbjct: 134 QFRQVIQRVPTLQALQGQI----------------RIEITSEGLRVQLIEGNRDSFFDLG 177 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQ 297 SS P T +L I +A + + GHTDA P+ NW LS DRA SA + Sbjct: 178 SSRLKPVTRQLLAAIAHEVAKLPNQVVVEGHTDARPYSGNTGRDYSNWELSTDRANSARR 237 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + + G+ +++S++ G+A L +DP+++ANRRI ILV Sbjct: 238 TMEEVGLRRNQVSRVIGYADQHLFNPTDPLDTANRRISILV 278 >gi|239908607|ref|YP_002955349.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239798474|dbj|BAH77463.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 346 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 64/313 (20%), Positives = 123/313 (39%), Gaps = 36/313 (11%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 + GSWK+ YAD +T +MAFFL+MW+++ + K+ I YFN F Sbjct: 20 AGAHGGSWKVAYADLVTAMMAFFLLMWLLSNAPQEKKEEIANYFNEFSLFNNPGPSATLL 79 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + +G ++ ++ + Sbjct: 80 DVG-------------------------GVGPPAAVVGTGEERPDVAIDRGGKEPTGGQG 114 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 D GK T E + + + A++++ I L Sbjct: 115 QNVGDMAGGKHEAPKTKAEADALAKAQAKAEAAAAAQAQALEQQ---------IEQALEK 165 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 V + V + + + I+D+ P++D LP+ +L + +V+ Sbjct: 166 AV-PELAGQVSVTQDKDKVRVEIMDKAERPLYDLGGVALLPDAQRILAAVTDVIRKEGVK 224 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 ++I GHTDA + + A NW LS RA +A + ++ +G++ D +++++G++ R + Sbjct: 225 VAIEGHTDAYRY-SGAYSNWDLSAGRALAARRFMVGAGLNPDAVAEVTGYSDTRPYVPGK 283 Query: 326 PMNSANRRIDILV 338 P + NRRI +L+ Sbjct: 284 PYDPKNRRISLLL 296 >gi|309778972|ref|ZP_07673742.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA] gi|308922319|gb|EFP67946.1| bacterial outer membrane protein [Ralstonia sp. 5_7_47FAA] Length = 315 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 130/337 (38%), Gaps = 66/337 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ ++E Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELSSVET 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + G D+ + + S K ++ +V + ++ Sbjct: 62 YFRTPLKVALFGGAGSGDQSSILQGSPALKQNMPQPNPSPSPTVQRQRNIRDES------ 115 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ L L ++ ++ Sbjct: 116 -------------------------------------------DDAALNKLKQKIAEMVE 132 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + ++ + D +G+ + +N PMF +S+ P Sbjct: 133 TNPVMSQFKHQL-------LIDMTTEGLRIQIVDQ---------QNRPMFANASAEVQPY 176 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++G L IS+ GHTDA+ + NW LS DRA ++ + L+ G+ Sbjct: 177 MRTILRELGSALNDVPNPISLSGHTDATQYATQHGYSNWELSADRANASRRELVAGGMKP 236 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +++S++ G ++ N NRRI I+V + + Sbjct: 237 EKVSRVVGLEASVPLDKANIYNPINRRISIVVLNARA 273 >gi|103488396|ref|YP_617957.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] gi|98978473|gb|ABF54624.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] Length = 287 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 59/333 (17%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + II+KK + ++ G+WK+ YADF+T +MAFFL+MW++ AT++ +KA+ YF P Sbjct: 10 RPIIVKKVIEAGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATNEKQRKALADYFAPT 69 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + G S +K Sbjct: 70 IVQSKQDTAGSNGLFGGDSLVSVDK----------------------------------- 94 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 Y + Q+ ++ RD+ G E KR Sbjct: 95 YPHGAAQTGTRAMTIPRDAVGGPREASGRARE----------------------AESKRF 132 Query: 193 QDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 LA+ + + + + + F T G+ I I+D + MF +S P + Sbjct: 133 SLLAQSMKDRIQSKGDLRRLARNLHFTETMEGLRIDIVDDADFSMFALGTSQLTPAGAKL 192 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++ +A + + IRGHTDA+P+ +NWRLS+DRA L GV+ DR + Sbjct: 193 FAEVAVPIAEAPNQLMIRGHTDAAPWSAKSGTNNWRLSVDRAEVTRHYLEFRGVASDRFA 252 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +I G A I SD + NRRI I + R Sbjct: 253 RIEGVADREPYIPSDRFDPRNRRISITLGWRPA 285 >gi|157376457|ref|YP_001475057.1| flagellar motor protein MotB [Shewanella sediminis HAW-EB3] gi|157318831|gb|ABV37929.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3] Length = 325 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 125/338 (36%), Gaps = 36/338 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + KK D P W +AD M++LM FF+++ + D K I Sbjct: 1 MAKKEKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P R I++ + +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNEMTEPVLEYQAGDDDSSGGVQQQ 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + KS +K E +E Sbjct: 121 RG------------------EQRGGEASATAQEEAESKSESKSEAEAKAKSEEESKAQAA 162 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + ++ D KK++ L+ + D + E+ I+I I R F S P Sbjct: 163 AQDQINDEVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFSSGSGFLQPR 216 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSE 306 V++++GE+L ++++ GHTD N NW LS RA + L++ + Sbjct: 217 FKPVIRRVGELLKDVPGIVTVSGHTDDMRISNELYSSNWDLSSKRAVAVAHELIRVKGFD 276 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 R K+ G A+ +A+D + NRR++I +E + Sbjct: 277 QRRMKVVGMANSDPLVANDSPGNRARNRRVEIAIEQGK 314 >gi|146278768|ref|YP_001168927.1| flagellar motor protein-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145557009|gb|ABP71622.1| Flagellar motor protein-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 135/335 (40%), Gaps = 62/335 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q N ++IK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Sbjct: 3 GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLAD 62 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 Y F+ P R S + + + + G Sbjct: 63 Y---------------FNPTIPMNRVSGGGDGAFGGDSVFHDRTMTQTG----------- 96 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 E E+G E A + Sbjct: 97 --------TGAVDERATPENKARGERG--------------------------ETGEAAE 122 Query: 188 RKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + RL+++ K + + + + +++ ++ T G++I I D + P+F + P P Sbjct: 123 EQARLEEVEKLLKARTGESMTMERLLRHIVTRITDEGLVIEIFDLPDVPLFLGDTDQPEP 182 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + + + EVL +T I++ GH + P I W LS RA +++ +G+ Sbjct: 183 ILPQIARLLAEVLPITTNRIAVSGHVRSYPITLIRNPAWDLSALRAQRMRELIESAGLPG 242 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +R +ISGFA + DPM N R+++++ + Sbjct: 243 ERTQRISGFADRKPATP-DPMAVRNNRLEVILLRK 276 >gi|149189846|ref|ZP_01868126.1| chemotaxis LafU protein [Vibrio shilonii AK1] gi|148836332|gb|EDL53289.1| chemotaxis LafU protein [Vibrio shilonii AK1] Length = 329 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 128/333 (38%), Gaps = 60/333 (18%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ D + G+WK+ ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEQVVFKRSGRRHDHEYHGGAWKVALADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 ++ +FD S + IDL+ D +T Sbjct: 62 Q-MASVFDKSTGSLFDTS-----QSISPIDLASDSSVT---------------------- 93 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S H S + G P + Sbjct: 94 ------SRHDSVHTVTSFFQGDRDG---------------------PESDSLINGTFDTQ 126 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +RL+ LAK ++ + + AD V T G+ I + D MF + S P Sbjct: 127 ERLEALAKVVNEMMRQINADG---NVDVTVTPQGLRIVLQDDYKQNMFRRGGSTLTPFFE 183 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + V + I GHTDA+ +R NW LS RA SA Q L+ G+ E Sbjct: 184 DLLLALAPVFQRVENPMIISGHTDATQYRKAFSSSSNWELSSSRANSARQTLVAGGMPEQ 243 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G + L DP +S NRRI++ + Sbjct: 244 RVLQVTGMSDRALLNQQDPKSSENRRIELFILT 276 >gi|254487666|ref|ZP_05100871.1| chemotaxis protein MotB [Roseobacter sp. GAI101] gi|214044535|gb|EEB85173.1| chemotaxis protein MotB [Roseobacter sp. GAI101] Length = 280 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 124/332 (37%), Gaps = 57/332 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N +IIK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 6 HANAAPVIIKRKKVVKGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADY 65 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F P I+ + K Sbjct: 66 FTPTIA-----------------------INRISGGGDGLFGGESIFTEMTLPKNGTGAT 102 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + + + + D E +L K D Sbjct: 103 SPMTPVEGQESGDVGAGTNGPDEEGNAELFKVVD-------------------------- 136 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 A+ + +V DNI + V+ T G++I + D + P+F P Sbjct: 137 -------AQLMGRGGESMVMDNIARHVITRQTEEGMVIELFDVEDVPLFKNGGDQPTQML 189 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ I + T I++ H ++P + W LS R +L K GV R Sbjct: 190 RELLEVIVDASKIVTNKIAVAAHVRSNPIVAVENPVWDLSAKRGTQTRILLEKLGVKPAR 249 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 I +++GFA + A D M+ N R++I++ Sbjct: 250 IERVTGFADRKP-AAIDTMDVRNNRVEIILLR 280 >gi|269965067|ref|ZP_06179232.1| flagellar motor protein [Vibrio alginolyticus 40B] gi|269830370|gb|EEZ84595.1| flagellar motor protein [Vibrio alginolyticus 40B] Length = 315 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 126/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S S D ++ + + + + + Sbjct: 127 GGQSPETSTQNNESAEADMQQQQ-----------------------------SKEMSQEM 157 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 158 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ + GHTD P + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + + D + NRR++I + + Sbjct: 271 RVRGMADTEPLLPNDSDDNRALNRRVEISIMQGE 304 >gi|92117049|ref|YP_576778.1| OmpA/MotB [Nitrobacter hamburgensis X14] gi|91799943|gb|ABE62318.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 276 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 66/326 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76 KKK + W + +AD M ++M+FF+++ + D++ K + + FG Sbjct: 3 KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNNKLKIVAGSMRDAFGVQT 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 GI + P R E + + Sbjct: 61 EVRYSGIIESDGLPTRPKLKNSAHVPPEETSATPTPNEQERFKTAG-------------- 106 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 L + + + ++ LQD+ Sbjct: 107 ------------------------------------ARLKTDREFALASASLRQALQDMP 130 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + K ++FE T+ G+ + I+DQ MF S P T ++++K+ Sbjct: 131 E----------LTELSKHIMFEETKEGLNLEIVDQDGRSMFADGSREPYERTRMLIRKLA 180 Query: 257 EVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + ISI GHT ++ P R+ D + LS DRA + Q+L + G+ I ++G Sbjct: 181 APLKATPLRISITGHTASNFIPTRS-DYDGFDLSADRANAVRQILEREGLPPSHIFAVAG 239 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 + DP +ANRR+ I + Sbjct: 240 KSDSMPLFPDDPSLAANRRVTITLMR 265 >gi|238788297|ref|ZP_04632091.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC 33641] gi|238723543|gb|EEQ15189.1| hypothetical protein yfred0001_7400 [Yersinia frederiksenii ATCC 33641] Length = 365 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 73/304 (24%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+++ + I +YF K +T+ +P + Sbjct: 1 MTAMMAFFLVMWLLSVSSPQELTQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDP--- 57 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 +++ ++ K Sbjct: 58 --------------------------------------------------TQQVGEVRKH 67 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 D E+S ++E Y L L ++ ++ RL+ L +L Sbjct: 68 IDSEES--RKEEYRLNKLREKLDQLIESDPRLRALR----------------PHLLINMM 109 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G+ I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ Sbjct: 110 DEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATG 169 Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E ++ ++ G A + NRRI ILV Sbjct: 170 ERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQTADDPVNRRISILV 229 Query: 339 EDRQ 342 ++Q Sbjct: 230 LNKQ 233 >gi|2130949|dbj|BAA20285.1| PomB [Vibrio alginolyticus] Length = 315 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + S S D ++ + + + + + Sbjct: 127 GGQSPATSTQNNESAEADMQQQQ-----------------------------SKEMSQEM 157 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 158 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ + GHTD P + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + + D + NRR++I + + Sbjct: 271 RVRGMADTEPLLPNDSDDNRALNRRVEISIMQGE 304 >gi|332534966|ref|ZP_08410784.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] gi|332035584|gb|EGI72076.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] Length = 306 Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 37/325 (11%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F QN E K I T + T Q++ + + + + + + S Sbjct: 55 AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + D G+ S + S E+ + +++ +L KKI+ Sbjct: 115 GRQEQRGDKRGGESRSTSQEQ---------------SSEQATSAADQEQTNELVKKIAQQ 159 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + D + E+ I+I I R F S+ P+ ++Q IG +L Sbjct: 160 LEKQIIDGA---IELESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGVLLKDV 213 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320 I++ GHTD N +NW LS RA + L G ++R+ + G A R Sbjct: 214 PGEITVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQTVQGFDKNRMM-VVGRADTRP 272 Query: 321 KIASDPM--NSANRRIDILVEDRQG 343 + +D NRR++I + + Sbjct: 273 LVPNDSNEDRRRNRRVEISILQGKA 297 >gi|77361278|ref|YP_340853.1| flagellar motor protein MotB [Pseudoalteromonas haloplanktis TAC125] gi|76876189|emb|CAI87411.1| sodium-driven polar flagellar protein [Pseudoalteromonas haloplanktis TAC125] Length = 306 Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 37/325 (11%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F QN E K I T + T Q++ + + + + + + S Sbjct: 55 AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + D G+ S + + E+ ++ +++ DL KKI+ Sbjct: 115 GRQEQRGDKRGGESRSTSKEQ---------------ASEQAISAADQQQTNDLVKKIAQQ 159 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + D + E+ I+I I R F S+ P+ ++Q+IG +L Sbjct: 160 LEKQIIDGA---IELESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQEIGVLLKDV 213 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320 I++ GHTD N +NW LS RA + L K G ++R+ + G A R Sbjct: 214 PGEITVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQKVVGFDKNRMM-VVGRAETRP 272 Query: 321 KIASDPM--NSANRRIDILVEDRQG 343 + +D NRR++I + + Sbjct: 273 LVPNDSNEDRRRNRRVEISILQGKA 297 >gi|34498443|ref|NP_902658.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472] gi|34104298|gb|AAQ60657.1| chemotaxis lafU protein [Chromobacterium violaceum ATCC 12472] Length = 328 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 139/340 (40%), Gaps = 63/340 (18%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G KN+ +IKK + + G+WK+ +ADF+ LM FLV+W++ A D + + Sbjct: 3 GLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENLQQ 62 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + +T S G +P + + +ID + T D G Sbjct: 63 L-----------LTTSGG-----SPLLQGNGKQIDHMGNPPGTLIPRDPIPGQAG----- 101 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 S + ++S R SE+ + +S D E + Sbjct: 102 ----------SQAASKSAVRDSDKRASEQPELPRRSYDSEADLR---------------- 135 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 K +L ++++K + + T G+ +++ D MF++ S+I Sbjct: 136 --KLAAQLSEMSQKA----------GLSSNLQTVITPYGLRVTLHDTDQQGMFERGSAIV 183 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN----IARDNWRLSLDRAYSAYQVLM 300 P +LQ+IG +L + + GHTDA+ + A NW LS +RA +A +M Sbjct: 184 EPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARLHMM 243 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + G++ D + ++ G A P+ + NRRI++LV Sbjct: 244 QGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLT 283 >gi|153835783|ref|ZP_01988450.1| PomB [Vibrio harveyi HY01] gi|148867501|gb|EDL66863.1| PomB [Vibrio harveyi HY01] Length = 314 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 6 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R + + Sbjct: 66 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGVSDRAGGTKRDQGKLT 125 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S H S D ++ + + + + Sbjct: 126 GGQSPETSTHNNQSAESD-----------------------------MQQQQSEQTSQEM 156 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 157 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ + GHTD P + R NW LS RA S Q + K G S R+ Sbjct: 211 RQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 269 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + D + NRR++I + + Sbjct: 270 RVRGMADTEPLAPNDSDANRALNRRVEISIMQGE 303 >gi|259417151|ref|ZP_05741070.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259346057|gb|EEW57871.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 279 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 57/310 (18%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW++NAT + +K + YF+P + G Q Sbjct: 27 AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQG--- 83 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 D E + IG+T + +++ QQS+ + + Sbjct: 84 -------DTMFTEDVKPQ---NGIGATKENPTDASRSQGDTGVADDQQSDEAEEANFLKI 133 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E+ +V+ ++ Sbjct: 134 EEALMGRGG-------------------------------------------ESMVSIDM 150 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + ++ T G++I + + + +F+ S P +L+ + V A ++I GH Sbjct: 151 ARHIVTRVTDEGLIIELFETEDAKLFENGSERPTILMRDLLRMVARVTASVENNVAIGGH 210 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 ++P W LS RA + ++L G+ RIS+++G+A L + +PM++ N Sbjct: 211 VASTPVVIANNPVWALSHARADATRELLETGGMQAKRISRVTGYADRDL-ASKNPMSARN 269 Query: 332 RRIDILVEDR 341 RI+I + + Sbjct: 270 NRINITLLRK 279 >gi|156973487|ref|YP_001444394.1| flagellar motor protein MotB [Vibrio harveyi ATCC BAA-1116] gi|156525081|gb|ABU70167.1| hypothetical protein VIBHAR_01177 [Vibrio harveyi ATCC BAA-1116] Length = 314 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 6 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R + + Sbjct: 66 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDQGKLT 125 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S H S D ++ + + + + Sbjct: 126 GGQSPETSTHNNQSAESD-----------------------------MQQQQSEQTSQEM 156 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 157 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ + GHTD P + R NW LS RA S Q + K G S R+ Sbjct: 211 RQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 269 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + D + NRR++I + + Sbjct: 270 RVRGMADTEPLAPNDSDANRALNRRVEISIMQGE 303 >gi|146341585|ref|YP_001206633.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278] gi|146194391|emb|CAL78416.1| putative chemotaxis protein MotB [Bradyrhizobium sp. ORS278] Length = 276 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 118/326 (36%), Gaps = 66/326 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76 KKK + W + +AD M ++M+FF+++ + D++ K + FG Sbjct: 3 KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNNKLKIVAGSMREAFGVQS 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + GI + P R E ++ +Q +R N L Sbjct: 61 ESRYSGIVESDGLPTRPKLKNAAHISPEETSREPSP---------EQEERQHTNGAKLKT 111 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +Q SL ++ LQD+ Sbjct: 112 DRQFALASASL-----------------------------------------RQALQDMP 130 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + I K ++FE T+ G+ + I+DQ MF S P T +++K+ Sbjct: 131 E----------MTEISKHIMFEETKQGLNLEIVDQDGRSMFADGSKTPYDRTRRLIEKLA 180 Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + + I GHT A P R+ + LS DRA + Q+L + G+ I +SG Sbjct: 181 APLKATPLRVQITGHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSG 239 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 A + DP +ANRR+ I + Sbjct: 240 KADTQPLFPDDPSLAANRRVTITLMR 265 >gi|312884943|ref|ZP_07744633.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122] gi|309367420|gb|EFP94982.1| flagellar motor protein MotB [Vibrio caribbenthicus ATCC BAA-2122] Length = 328 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 134/339 (39%), Gaps = 37/339 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 ++++ A P L W +AD M++LM FF+++ + D K I Sbjct: 1 MEEEEACKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P R ID+ + + IT+ +V+ G +++ QR Sbjct: 61 NRLEVKDIPKGTSVIAMEFRPGRPEPTPIDVIMQQTIDITQQTVEFHEGESDRAGGMQRD 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + +++ S ++EE S+E+ + Sbjct: 121 QGKETG-----------------GQSTETSTETSQEADSQSQEEQQQQQQESQEQQQQSE 163 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++L+ +A+ I L + ++ E I I I R F + S+ P+ Sbjct: 164 SSEQLETVAENIKQALEREIEQGAME---VENLGQQIDIRI---RERGAFPEGSAFLQPK 217 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVS 305 ++++I E++ V+ + GHTD P + R NW LS RA S Q + K G Sbjct: 218 FRPLVRQIAELVKDIPGVVRVSGHTDNQPIDSELYRSNWDLSAQRAVSVAQEMEKVRGFK 277 Query: 306 EDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQ 342 DR+ ++ G A ++ + NRR++I + + Sbjct: 278 HDRL-RVRGMADTEPLGPNKTEAQRALNRRVEISIMQGK 315 >gi|4322001|gb|AAD15905.1| sodium-driven polar flagellar protein [Vibrio parahaemolyticus] Length = 315 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 126/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S S D ++ + + + + + Sbjct: 127 GGQSPETSTQSNQSAESDMQQQQ-----------------------------SKEMSQEM 157 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L + I L + ++ E I+I + R F + S+ P+ ++ Sbjct: 158 ETLMESIKKALEREIEQGAIE---VENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ I GHTD + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + + D + NRR++I + + Sbjct: 271 RVRGMADTEPLVPNDSDENRALNRRVEISIMQGE 304 >gi|209885628|ref|YP_002289485.1| OmpA/MotB [Oligotropha carboxidovorans OM5] gi|209873824|gb|ACI93620.1| OmpA/MotB [Oligotropha carboxidovorans OM5] Length = 275 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 114/324 (35%), Gaps = 63/324 (19%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76 +KK + W + +AD M ++M+FF+++ + D K + FG Sbjct: 3 RKKRGDAHAGGHG--WFVTFADLMGLMMSFFVMLVAFSNQDQTKLKIVAGSMREAFGVQN 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G+ + P R +D E + Sbjct: 61 DARYSGVIETDGLPTRPKLKNVDHIPPEEASNTPSPD----------------------- 97 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 EK + K + + + + ++ LQD+ Sbjct: 98 ---------------------------EKEMAKLYGARIKTDREFALASASLRQALQDMP 130 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + K ++FE T+ G+ + I+DQ MF + S P T ++++K+ Sbjct: 131 E----------MTELSKHIMFEETKNGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLA 180 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L S I+I GHT A+ D + LS DRA + Q+L G+ I +SG A Sbjct: 181 APLRQSPLRIAIVGHTSANVPLRPGYDAFDLSADRANAVRQILQNEGLPATHIFSVSGKA 240 Query: 317 HHRLKIASDPMNSANRRIDILVED 340 DP SANRR+ I + Sbjct: 241 DTEPLFPDDPTLSANRRVTITLMR 264 >gi|170727809|ref|YP_001761835.1| flagellar motor protein MotB [Shewanella woodyi ATCC 51908] gi|169813156|gb|ACA87740.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 322 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 130/335 (38%), Gaps = 36/335 (10%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 K D P W +AD M++LM FF+++ + D K I N Sbjct: 3 KQKCDCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNKV 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + + + P R I E IT+ + ++ T +YQ E++ Sbjct: 63 EVKDIPKGTSVIALEFRPGRPEPTPI-----ETITQQTSEI----TEPVIEYQAGEDDSS 113 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 S QQ + + +++ S+D E +E E ++ + Sbjct: 114 GGSQKQQGQQRGGESSATAQEQSVAQSSSDSESEAKAKE---------ESDAQAAAQENI 164 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + KK++ L+ + D + E+ I+I I R F S P V+ Sbjct: 165 NEQVKKMAQELNTEIVDGA---IEIESLGQQIIIRI---REKGAFSSGSGFLQPRFKPVV 218 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 +++GE+L ++++ GHTD N NW LS RA + L+K G R+ Sbjct: 219 RRVGELLKDVPGIVTVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELIKVKGFDPQRM- 277 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 K+ G A+ +A+D + NRR++I +E + Sbjct: 278 KVVGMANSDPLVANDTSSHRARNRRVEIAIEQGKA 312 >gi|119472095|ref|ZP_01614326.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7] gi|119445115|gb|EAW26408.1| flagellar motor protein MotB [Alteromonadales bacterium TW-7] Length = 306 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 122/325 (37%), Gaps = 37/325 (11%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F QN E K I T + T Q++ + + + + + + S Sbjct: 55 AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + D G+ S + S E+ ++ +++ +L KKI+ Sbjct: 115 GRQEQRGDKRGGESRSTSQEQ---------------SSEQAISAADQEQTNELVKKIAQQ 159 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + D ++ E+ I+I I R F S+ P+ ++Q IGE+L Sbjct: 160 LERQIIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPKFKPIIQDIGELLKDV 213 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320 I++ GHTD N +NW LS RA + L G + R+ + G A R Sbjct: 214 PGEITVSGHTDDFQVSNELYVNNWDLSSKRAVAVASELQTVQGFDKTRMM-VVGRAETRP 272 Query: 321 KIAS--DPMNSANRRIDILVEDRQG 343 + + + NRR++I + + Sbjct: 273 LVPNETNEDRRRNRRVEISILQGKA 297 >gi|148254925|ref|YP_001239510.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1] gi|146407098|gb|ABQ35604.1| putative chemotaxis protein MotB [Bradyrhizobium sp. BTAi1] Length = 276 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 120/326 (36%), Gaps = 66/326 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76 KKK + W + +AD M +L++FF+++ + D++ K + + FG Sbjct: 3 KKKRGDAHGGGHG--WFVTFADLMGLLVSFFVMLVAFSTMDNNKLKVVAGSMRDAFGVQS 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + GI + P R E ++ +Q +R N L Sbjct: 61 ESRYSGIVESDGLPTRPKLKNAAHVSPEETSREPSP---------EQEERQHTNGAKLKT 111 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +Q SL ++ LQD+ Sbjct: 112 DRQFALASASL-----------------------------------------RQALQDMP 130 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + I K ++FE T+ G+ + I+DQ MF S +P T +++K+ Sbjct: 131 E----------MTEISKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLIEKLA 180 Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + + I GHT A P R+ + LS DRA + Q+L + G+ I +SG Sbjct: 181 APLKATPLRVQITGHTAAGFVPARS-DYGAFDLSADRANAVRQILEREGLPPSHIFAVSG 239 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 A + DP +ANRR+ I + Sbjct: 240 KADTQPLFPDDPSLAANRRVTITLMR 265 >gi|27378912|ref|NP_770441.1| chemotaxis protein [Bradyrhizobium japonicum USDA 110] gi|27352062|dbj|BAC49066.1| pomB [Bradyrhizobium japonicum USDA 110] Length = 276 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 117/326 (35%), Gaps = 66/326 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76 KKK + W + +AD M ++M+FF+++ + D + K + + FG Sbjct: 3 KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTQDANKLKIVAGSMRDAFGVQS 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 GI + P R +D E + + +++ N Sbjct: 61 EARYAGIVESDGLPTRPRLKNVDHIQPEDASNTPTPDQEDRDRTSGAKIKVDRNF----- 115 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + A ++ LQD+ Sbjct: 116 ---------------------------------------------ALAAASLRQALQDMP 130 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + K ++FE T+ G+ + I+DQ MF S +P T +++K+ Sbjct: 131 E----------LTEMSKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLVEKLA 180 Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + +SI GHT A P R+ + LS DRA + Q+L + G+ I +SG Sbjct: 181 IPLKATPLRVSIAGHTAAGFVPTRS-DYGAFDLSADRANAVRQILEREGLPASHIFAVSG 239 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 A + DP +ANRR+ I + Sbjct: 240 KADTQPLFPDDPSLAANRRVTITLMR 265 >gi|85715414|ref|ZP_01046396.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85697835|gb|EAQ35710.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 276 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 118/326 (36%), Gaps = 66/326 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76 KKK + W + +AD M ++M+FF+++ + D+ K + + FG Sbjct: 3 KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNQKLKIVAGSMRDAFGSQT 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 GI + P R Sbjct: 61 EVRYSGIIESDGLPTRPKL----------------------------------------- 79 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + H T + + + + + + L S + A++ L +L+ Sbjct: 80 -KNAAHVPPDETSTTPTPDEQERFKTAGARLKTDREFALASASLRQ--ALQDMPELTELS 136 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K ++FE T+ G+ + I+DQ MF + S P T +++ K+ Sbjct: 137 K----------------HIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIGKLA 180 Query: 257 EVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + ISI GHT ++ P R+ D + LS DRA Q+L + G+ I +SG Sbjct: 181 APLTATPFRISITGHTASNFVPMRS-DYDGFDLSADRANVVRQILEQEGLPPSHIFAVSG 239 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 + DP +ANRR+ I + Sbjct: 240 KSDSMPLFPDDPSLAANRRVTITLMR 265 >gi|221640801|ref|YP_002527063.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131] gi|221161582|gb|ACM02562.1| chemotaxis MotB protein [Rhodobacter sphaeroides KD131] Length = 285 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 137/341 (40%), Gaps = 62/341 (18%) Query: 2 NSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 G Q N ++IK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + Sbjct: 4 RGAGMAGQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQ 63 Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 +K G+ D NP ++ D + T Sbjct: 64 RK------------------GLADYFNPTIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTG 105 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 R + + + ++G D + Sbjct: 106 AANDR-------------ATAERKARGEMGQEGADAAE---------------------- 130 Query: 182 KILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 +K+L+++ K + + + + +++ V+ T G++I I D + P+F Sbjct: 131 -------QKQLEEVEKMLKARSGESMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGD 183 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P + + + E+L +T I++ GH + P I W +S RA +L Sbjct: 184 TDQPEAVLPQIARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLE 243 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 G+ ++R+ ++SGFA ++ DPM N R+++++ R Sbjct: 244 SEGLPDERMQRVSGFADRKIVTP-DPMAVRNNRLEVILLRR 283 >gi|238764369|ref|ZP_04625319.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC 33638] gi|238697395|gb|EEP90162.1| hypothetical protein ykris0001_37320 [Yersinia kristensenii ATCC 33638] Length = 375 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 73/301 (24%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 +MAFFLVMW+++ + I +YF K +T + D +P + Sbjct: 1 MMAFFLVMWLLSVSSPQELTQIAEYFRTPLKVALTHGEKSSDSTSPIPGGGDDP------ 54 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 +++ ++ K D Sbjct: 55 -----------------------------------------------TQQVGEVRKHIDS 67 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 E+S ++E Y L L ++ ++ RL+ L +L G Sbjct: 68 EES--RKEEYRLNKLREKLDQLIESDPRLRALR----------------PHLLINMMDEG 109 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-- 281 + I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ + Sbjct: 110 LRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYASGERG 169 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 NW LS DRA ++ + L+ G+ E ++ ++ G A + NRRI ILV ++ Sbjct: 170 YSNWELSADRANASRRELLAGGLDEGKVLRVVGMASTMRLKEQASDDPVNRRISILVLNK 229 Query: 342 Q 342 Q Sbjct: 230 Q 230 >gi|294139895|ref|YP_003555873.1| sodium-driven polar flagellar protein PomB [Shewanella violacea DSS12] gi|293326364|dbj|BAJ01095.1| sodium-driven polar flagellar protein PomB [Shewanella violacea DSS12] Length = 325 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 130/339 (38%), Gaps = 38/339 (11%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + KK + P W +AD M++LM FF+++ + D K I Sbjct: 1 MAKKAKCECPPPGAPLWLATFADLMSLLMCFFILLLSFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P R I++ + +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGRPEPTPIEIINQQTNEMTEPILEYQAGDDDSAGGVQQQ 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + D K+ +K E+ +E Sbjct: 121 RG------------------EQRGGEASATAQEQDEAKAESKAESESKAKAEEESKAQAA 162 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ + D KK++ L+ + D ++ E+ I+I I R F S P Sbjct: 163 AQENINDQVKKMAMELNKEIVDGAIE---IESLGQQIIIRI---REKGAFSSGSGFLQPR 216 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305 V++++GE+L ++++ GHTD N NW LS RA + L+K G Sbjct: 217 FKPVVRRVGELLRDIPGIVTVSGHTDDMHISNELYSSNWDLSSKRAVAVAHELIKVKGFE 276 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 ++R+ K+ G A+ + +D S NRR++I +E + Sbjct: 277 QNRM-KVVGMANSAPLVDNDSASNRSRNRRVEIAIEQGK 314 >gi|255264513|ref|ZP_05343855.1| OmpA/MotB [Thalassiobium sp. R2A62] gi|255106848|gb|EET49522.1| OmpA/MotB [Thalassiobium sp. R2A62] Length = 272 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 124/327 (37%), Gaps = 69/327 (21%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 IIIK+K + ++ G+WK+ YADF+T +MAFF++MW++ N Sbjct: 8 PIIIKRKKVVSGDGHHGGAWKVAYADFVTAMMAFFMLMWLL---------------NATT 52 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 +N F P R S E + + ++G+ Q Sbjct: 53 ENQRKGIADYFSPTIPISRISGGGDGAFGGESVLSKDLLPEVGNLPQP------------ 100 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + L +++I + + L Sbjct: 101 -----------------------------------SQAQAQLLGAEQDEISFNQVMEALT 125 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L+ + V D +++ V+ T G++I + D + P+F +S +P + Sbjct: 126 ALSGE------SAVIDRMLRHVITRVTDEGLIIELFDLEDQPLFIDASDVPTGVMQDLTA 179 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I +++ + +++ GH + P + NW +S RA + +L ++G ++++++ Sbjct: 180 MIAQIVGFVSNDLAVEGHVRSQPIVLLKNQNWEISHSRAQAIRLLLQQNGAYPQQMNRVT 239 Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340 + +P++ N RI+I+V Sbjct: 240 AHGDREPQYK-NPLSVRNNRIEIIVLR 265 >gi|126463722|ref|YP_001044836.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC 17029] gi|332559779|ref|ZP_08414101.1| MotB2 [Rhodobacter sphaeroides WS8N] gi|126105386|gb|ABN78064.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides ATCC 17029] gi|332277491|gb|EGJ22806.1| MotB2 [Rhodobacter sphaeroides WS8N] Length = 278 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 134/335 (40%), Gaps = 62/335 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q N ++IK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K Sbjct: 3 GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---- 58 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G+ D NP ++ D + T R Sbjct: 59 --------------GLADYFNPTIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGAANDR- 103 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 L E G++ + + Sbjct: 104 ---------------ATAELKASGETGQEGADAAE------------------------- 123 Query: 188 RKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K+L+++ K + + + + +++ V+ T G++I I D + P+F + P Sbjct: 124 -QKQLEEVEKMLKARSGESMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGDTDQPEA 182 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + + + E+L +T I++ GH + P I W +S RA +L G+ Sbjct: 183 VLPQIARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESEGLPG 242 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +R+ ++SGFA ++ DPM N R+++++ R Sbjct: 243 ERMQRVSGFADRKIVTP-DPMAVRNNRLEVILLRR 276 >gi|167624989|ref|YP_001675283.1| flagellar motor protein MotB [Shewanella halifaxensis HAW-EB4] gi|167355011|gb|ABZ77624.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 322 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 63/340 (18%), Positives = 125/340 (36%), Gaps = 41/340 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + KK D P W +AD M++LM FF+++ + D K I Sbjct: 1 MAKKAKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P + I++ + +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPMLEFQAGEDDSAGGIQQQ 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 S + + + + +ST + S Sbjct: 121 RGEQRGGQASATAVEQSEAEAKAESAAQSETESTKTQASA-------------------- 160 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + ++ + KK++ L+ + D + E+ I+I I R F S P Sbjct: 161 -QDKINEQVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPR 213 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305 V++++GE+L ++++ GHTD N NW LS RA + L++ G Sbjct: 214 FKPVVRRVGELLKDVPGIVTVSGHTDDWKISNELYSSNWDLSSKRAVAVAHELIRVKGFD 273 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + R+ K+ G A + ++ + NRR++I +E + Sbjct: 274 QQRM-KVVGMASSAPLVENNSSANRARNRRVEIAIEQGKA 312 >gi|85710173|ref|ZP_01041238.1| flagellar motor component [Erythrobacter sp. NAP1] gi|85688883|gb|EAQ28887.1| flagellar motor component [Erythrobacter sp. NAP1] Length = 319 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 139/333 (41%), Gaps = 60/333 (18%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 II+KK ++ G+WK+ YADF+T +MAFFL++W++ AT+++ ++ Sbjct: 10 PAPIIVKKVTIAQGDGHHGGAWKVAYADFVTAMMAFFLLLWLLGATEENQRR-------- 61 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 GI D P T + + L + Sbjct: 62 ----------GIADYFAP-----------------TLVKTRQQSAGADGMLGGSSLTDVD 94 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 Y + Q+ ++ R +E G ++ +R Sbjct: 95 NYPNAQGQTGTLSITVPRGAEGGPMEGGGDGDIET-----------------------ER 131 Query: 192 LQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L L ++I L+ ++ + V GI I ++D + MF ++I + Sbjct: 132 LDRLREQIDEALAQRRQISHLARQVKVMRAPDGIRIDLVDDADFSMFALGTTILTQDARG 191 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+ IGEVL + +RGHTD+ P+R+ +NW LS RA + Q L+ SG+ +R Sbjct: 192 LLEVIGEVLEAQRTPLILRGHTDSLPWRDGITANNWSLSAGRAEATRQALIASGLEANRF 251 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++I G A IA +P + NRRI +L+ ++Q Sbjct: 252 ARIEGVADTEPLIADNPADPRNRRISLLLLEQQ 284 >gi|75675430|ref|YP_317851.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74420300|gb|ABA04499.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 276 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 64/325 (19%), Positives = 116/325 (35%), Gaps = 64/325 (19%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76 KKK + W + +AD M ++M+FF+++ + D+ K + + FG Sbjct: 3 KKKRGDAHGGGHG--WFVTFADLMGLMMSFFVMLVAFSTMDNQKLKIVAGSMRDAFGSQT 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 GI + P R Sbjct: 61 EVRYSGIIESDGLPTRPKL----------------------------------------- 79 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + H T + + + + + + L S ++ LQD+ Sbjct: 80 -KNAAHVPPDETSTTPTPNEQERFKIAGARLKTDREFALASAS--------LRQALQDMP 130 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + K ++FE T+ G+ + I+DQ MF + S P T ++++++ Sbjct: 131 ELTE----------LSKHIMFEETKEGLNLEIVDQDGRSMFAEGSKEPYERTRMLIRRLA 180 Query: 257 EVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L + IS+ GHT ++ D + LS DRA Q+L + GV I +SG Sbjct: 181 APLKATPFRISVTGHTASNFIAMRSDYDGFDLSADRANVVRQILEREGVPAGHIFAVSGK 240 Query: 316 AHHRLKIASDPMNSANRRIDILVED 340 + DP +ANRR+ I + Sbjct: 241 SDSMPLFPDDPSLAANRRVTITLMR 265 >gi|127513695|ref|YP_001094892.1| flagellar motor protein MotB [Shewanella loihica PV-4] gi|126638990|gb|ABO24633.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 314 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 127/339 (37%), Gaps = 49/339 (14%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + KKV D P W +AD M++LM FF+++ + D K I Sbjct: 1 MAKKVKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P + I++ + +T+ +++++ G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPTIEVQAGEDDSAGGVQQQ 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + E S +E +K++ Sbjct: 121 RG-----------------------------EQRGGEASSTAQEEADSEAQAKQQQQEAA 151 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + ++ D KK++ L+ + D + E+ I+I I R F S P Sbjct: 152 SQDQINDRVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFSSGSGFLQPR 205 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVS 305 V++++GE+L +I++ GHTD N NW LS RA + L++ G Sbjct: 206 FKPVIRRVGELLKDVPGIITVSGHTDDMNISNELYSSNWDLSSKRAVAVAHELVRVPGFD 265 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + R+ K+ G A + +D + NRR++I +E + Sbjct: 266 QQRM-KVVGMASTAPLVPNDSAANRARNRRVEIAIEQGK 303 >gi|269962340|ref|ZP_06176690.1| flagellar motor protein [Vibrio harveyi 1DA3] gi|269832836|gb|EEZ86945.1| flagellar motor protein [Vibrio harveyi 1DA3] Length = 314 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 123/334 (36%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 6 KCDCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 65 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R + + Sbjct: 66 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDQGKLT 125 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S S D ++ + + + + Sbjct: 126 GGQSPETSTQNNQSAESD-----------------------------MQQQQSEQTSQEM 156 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 157 DTLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ + GHTD P + R NW LS RA S Q + K G S R+ Sbjct: 211 RQIAELVKDVPGIVRVSGHTDNQPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 269 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + D + NRR++I + + Sbjct: 270 RVRGMADTEPLAPNDSDANRALNRRVEISIMQGE 303 >gi|323495111|ref|ZP_08100198.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546] gi|323310662|gb|EGA63839.1| flagellar motor protein MotB [Vibrio brasiliensis LMG 20546] Length = 314 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 124/334 (37%), Gaps = 49/334 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 P L W +AD M++LM FF+++ + D K I N Sbjct: 7 CKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + I ++ P R ID+ + + IT+ +++ G +++ QR + ++ Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQRDKGSLTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + S + D+E+ + + + + L+ Sbjct: 127 GQSPDTSTQNNQNSESDNEQQQ-----------------------------SAEMSQELE 157 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L + + E I I I R F + S+ P+ +++ Sbjct: 158 TLMESIKKALEREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVR 211 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 +I +++ V+ + GHTD + R NW LS RA S Q + K G + +R+ + Sbjct: 212 QIADLVKDIPGVVRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQEMEKVRGFNHERL-R 270 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 + G A +D S NRR++I + + Sbjct: 271 VRGMADTEPLGPNDTEAQRSRNRRVEISIMQGEA 304 >gi|77464880|ref|YP_354384.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1] gi|77389298|gb|ABA80483.1| putative chemotaxis MotB protein [Rhodobacter sphaeroides 2.4.1] Length = 278 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 134/335 (40%), Gaps = 62/335 (18%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q N ++IK+K + ++ G+WK+ YADF+T +MAFF++MW++NAT + +K Sbjct: 3 GQSNAAPVVIKRKKVVQGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---- 58 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G+ D NP ++ D + T R Sbjct: 59 --------------GLADYFNPTIPMNRVSGGGEGAFGGNSVFHDQTMTQTGTGAANDR- 103 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 L E G++ + + Sbjct: 104 ---------------ATAELKASGEMGQEGADAAE------------------------- 123 Query: 188 RKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K+L+++ K + + + + +++ V+ T G++I I D + P+F + P Sbjct: 124 -QKQLEEVEKMLKARSGESMTMQRLLRHVVTRITDEGLVIEIFDLPDVPLFFGDTDQPEA 182 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + + + E+L +T I++ GH + P I W +S RA +L G+ Sbjct: 183 VLPQIARLLAEILPITTNRIAVNGHMRSYPITLIRNPVWDISAARAQRMRGLLESEGLPG 242 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +R+ ++SGFA ++ DPM N R+++++ R Sbjct: 243 ERMQRVSGFADRKIVTP-DPMAVRNNRLEVILLRR 276 >gi|254228602|ref|ZP_04922026.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262395023|ref|YP_003286877.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] gi|151938781|gb|EDN57615.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262338617|gb|ACY52412.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] Length = 315 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 125/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S S D ++ + S ++E Sbjct: 127 GGQSPETSTQNNQSAEADMQQQQSEEMSQEMET--------------------------- 159 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 160 --LMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ + GHTD P + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + + D + NRR++I + + Sbjct: 271 RVRGMADTEPLLPNDSDENRALNRRVEISIMQGE 304 >gi|212636367|ref|YP_002312892.1| flagellar motor protein MotB [Shewanella piezotolerans WP3] gi|212557851|gb|ACJ30305.1| MotB protein [Shewanella piezotolerans WP3] Length = 322 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 61/340 (17%), Positives = 124/340 (36%), Gaps = 41/340 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + KKV D P W +AD M++LM FF+++ + D K I Sbjct: 1 MAKKVKCDCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P R I++ + +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGRPESTPIEIINQQTNEMTEPMLEFQEGEDDSAGGVQQQ 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++G + + ++ S+ Sbjct: 121 RG---------------------EQRGGESSSTAQEQEDAQALAKSTSESKSEASKAEAA 159 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ + KK++ L+ + D + E+ I+I I R F S P Sbjct: 160 AQEEINQQVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFASGSGFLQPR 213 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305 +++++GE+L ++++ GHTD N NW LS RA + +++ G Sbjct: 214 FKPIVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVAHEMIRVKGFD 273 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + R+ K+ G A + ++ + NRR++I +E + Sbjct: 274 QQRL-KVVGMASSAPLVENNSQANRARNRRVEIAIEQGKA 312 >gi|37679056|ref|NP_933665.1| flagellar motor protein MotB [Vibrio vulnificus YJ016] gi|326423687|ref|NP_759314.2| flagellar motor rotation protein motB [Vibrio vulnificus CMCP6] gi|37197798|dbj|BAC93636.1| flagellar motor protein [Vibrio vulnificus YJ016] gi|319999044|gb|AAO08841.2| Flagellar motor rotation protein motB [Vibrio vulnificus CMCP6] Length = 318 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 122/334 (36%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ QR Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------ 120 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 D K T + + +++ + K + Sbjct: 121 -----------------------DQGKMTGGQSPETSTQTNQNTEQQQQQQQSEAMSKEM 157 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 158 ETLMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ I GHTD + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ G A + +D + NRR++I + + Sbjct: 271 RVRGMADTDPLVDNDTEENRARNRRVEISIMQGE 304 >gi|299133623|ref|ZP_07026817.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] gi|298591459|gb|EFI51660.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] Length = 275 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 63/324 (19%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KKK + W + +AD M ++M+FF+++ + D K + Sbjct: 3 KKKRGEAHAGGHG--WFVTFADLMGLMMSFFVMLVAFSNQDQTKLKIVAGSMREAFGVAN 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+ + P R +D E + Sbjct: 61 ARYSGVIETDGLPTRPKLKNVDHIPPEEASNTPSPD------------------------ 96 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 EK K + + + + ++ LQD+ + Sbjct: 97 --------------------------EKEQAKLYGARIKTDREFALASASLRQALQDMPE 130 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + K ++FE T+ G+ + I+DQ MF + S P T ++++K+ Sbjct: 131 ----------MTELSKHIMFEETKQGLNLEIVDQDGRSMFAEGSREPYERTRMLIRKLAA 180 Query: 258 VLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L S ++I GHT + D + LS DRA + Q+L ++G+ I +SG A Sbjct: 181 PLRQSPLRVAIVGHTSSDFTSPRPGYDAFDLSADRANAVRQILERAGLPSTHIFSVSGKA 240 Query: 317 HHRLKIASDPMNSANRRIDILVED 340 DP +ANRR+ I + Sbjct: 241 DSEPLFPDDPSLAANRRVTITLMR 264 >gi|258624381|ref|ZP_05719329.1| flagellar motor protein [Vibrio mimicus VM603] gi|258583343|gb|EEW08144.1| flagellar motor protein [Vibrio mimicus VM603] Length = 319 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 49/333 (14%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 4 EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ ++D + G +++ QR Sbjct: 64 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQRDSGK 123 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +++ S + + ++ + A + Sbjct: 124 LTGGQSAESSTQDNQNTQSEMQQQQ-----------------------------AKAMSE 154 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +++ +A+ I LS + + E I I I R F + S+ P+ Sbjct: 155 QMETVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++++I +++ + + GHTD + R NW LS RA S Q + K G R Sbjct: 209 LVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQR 268 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 + ++ G A + +D NRR++I + Sbjct: 269 L-QVRGMADTQPLGPNDTEAQRALNRRVEISIL 300 >gi|85058002|ref|YP_453704.1| flagellar motor protein MotB [Sodalis glossinidius str. 'morsitans'] gi|84778522|dbj|BAE73299.1| chemotaxis protein MotB [Sodalis glossinidius str. 'morsitans'] Length = 341 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 135/336 (40%), Gaps = 77/336 (22%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ ++IK + A + + +GSWKI YADFMT +MAFF+VMW++ AT ++ I Y Sbjct: 2 KKPSPPVVIKWRRAQNAN-HYVGSWKIAYADFMTAMMAFFMVMWMLGATTPQQREQIADY 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T G F+ N P Sbjct: 61 FKMPLKEALTH-NGKFNMGNIP-------------------------------------- 81 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ ++ R+ E +D+ + + + + ++ Sbjct: 82 ----LPVDAKDTDGLTRLRQRELEHQRDIQRLKNTRHRLEQM---------------LRN 122 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RL++L + TL + G+ E + PMF + P Sbjct: 123 DPRLRELQPNMRITL-------VHDGLRIEIID---------SKKRPMFATGGTAIAPYM 166 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+ I VL + IS+ GHTD P+ N NW LS DRA ++ + L++ G++ Sbjct: 167 RSILRIIAPVLDNLPNRISLAGHTDNQPYLNGERGYGNWELSTDRANASRRELVEGGLAG 226 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 D+I ++ G A+ N+A RRI I++ R+ Sbjct: 227 DKILRVIGMANTMAPAGKVDDNAAQRRISIVILTRE 262 >gi|157962805|ref|YP_001502839.1| flagellar motor protein MotB [Shewanella pealeana ATCC 700345] gi|157847805|gb|ABV88304.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 322 Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 125/340 (36%), Gaps = 41/340 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + KK D P W +AD M++LM FF+++ + D K I Sbjct: 1 MAKKAKCDCPPAGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRL 127 N + + + P + I++ + +T+ ++ + G + Q+ Sbjct: 61 NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPMLEFQEGEDDSAGGIQQQ 120 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 S + + + + +ST + S Sbjct: 121 RGEQRGGQASATAVEQSEAEAKAENAAQSDTQSTKTQASA-------------------- 160 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + ++ + KK++ L+ + D + E+ I+I I R F S P Sbjct: 161 -QDKINEQVKKMAQELNKEIVDGA---IEIESLGQQIIIRI---REKGAFASGSGFLQPR 213 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305 V++++GE+L ++++ GHTD N NW LS RA + L+K G Sbjct: 214 FKPVVRRVGELLKDVPGIVTVSGHTDDWNISNELYSSNWDLSSKRAVAVGHELIKVKGFE 273 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 +R+ K+ G A + ++ + NRR++I +E + Sbjct: 274 PNRM-KVVGMASSDPLVENNSSANRARNRRVEIAIEQGKA 312 >gi|83717140|ref|YP_438356.1| chemotaxis lafU protein [Burkholderia thailandensis E264] gi|167614802|ref|ZP_02383437.1| Chemotaxis lafU protein [Burkholderia thailandensis Bt4] gi|257141387|ref|ZP_05589649.1| chemotaxis lafU protein [Burkholderia thailandensis E264] gi|83650965|gb|ABC35029.1| Chemotaxis lafU protein [Burkholderia thailandensis E264] Length = 311 Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 129/338 (38%), Gaps = 76/338 (22%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N+E I ++ ++ G+WK+ +ADF LMA F+V+W++N T + +K + Sbjct: 4 NKEAGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G+ GIF+ QR Sbjct: 64 EI--AGRPFFDGGVGIFE---------------------------------------QRS 82 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + ++QQ E K P ++E+ + Sbjct: 83 RKPVVAPFDAQQPERVKR----------------------------RTPGAARERTIDSL 114 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +++R LA +I S L D V G+ I+I D MF++ S P+ Sbjct: 115 QQRR--ALAARIMDEASRLGMDG---NVATAINDDGVRITIHDSDKQGMFERRSDALNPQ 169 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +L + VL T + I GHTDA+ + ++ +NW LS RA A Q+L G+ Sbjct: 170 FVRLLTALVPVLGTVTNKMVIVGHTDATQYADTSVFSNNWNLSSRRALRARQILADGGMD 229 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 R+ +ISG + +P + NRR+++L+ + Sbjct: 230 VQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 267 >gi|254501723|ref|ZP_05113874.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222437794|gb|EEE44473.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 284 Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 120/324 (37%), Gaps = 53/324 (16%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 W + +AD M++L+ FF+++ + D + + + FG + Sbjct: 3 RKKPQGGGGAPDWLVTFADLMSLLVCFFVLIISFSIQDKEKLQVVAGSMREAFGVKDSSR 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + + P R + I++ +L ++ + +R + ++ + Sbjct: 63 KTGIIEVEGIPIRDYM--------KDISQVEQELDSDFAQERHEKRRKQGPEANTHDTME 114 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +E K + A ++ Q++ + Sbjct: 115 AEIEKPRQFATA---------------------------------AASLRQAWQEMPE-- 139 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + ++ E T G+ I ++DQ MF + S P T ++ ++ VL Sbjct: 140 --------ITEVSTNIILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAQMAPVL 191 Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I I GHT A + + + W LS +RA A Q+L + GV + + + G + Sbjct: 192 SRMPNRIEITGHTTAGAATVDPSYTGWDLSTERANVARQILSEYGVPDGQFYSVVGKSDT 251 Query: 319 RLKIASDPMNSANRRIDILVEDRQ 342 +DP +ANRR+ IL+ + Sbjct: 252 EPLFPNDPYLAANRRVGILLMAEE 275 >gi|83648052|ref|YP_436487.1| flagellar motor protein [Hahella chejuensis KCTC 2396] gi|83636095|gb|ABC32062.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 328 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 125/335 (37%), Gaps = 69/335 (20%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E II+++ + G+WK+ +ADF T M F ++ Sbjct: 3 EERPPIIVRRVRKGHHA--HGGAWKVAFADFATA-MMAFFLV------------------ 41 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 L + E TK D G +++ + Sbjct: 42 ------------------------------LWLSEAATKEQKDAISGYFTDPVGFEQGGS 71 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + ++ D + + + A + Sbjct: 72 PYVIDLGGSVTVTVTQDTAGKPQDQPEVRMRED----------------TIQDLAAQLEQ 115 Query: 190 KRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++L L ++I + + N K +L + T G+ I I+D+R PMFD S P Sbjct: 116 QKLTQLMQEIMAQIEKNPKLNAFKDQLLLDITDEGLRIQIVDKRQRPMFDSGRSELQPYF 175 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ + +A IS+ GHTDA PF NW LS DRA +A + L++ G+ E Sbjct: 176 EEILFELAKSIAKVRNKISVSGHTDAQPFLGRDNYSNWELSADRANAARRALVEGGLPEG 235 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 R++++ G A L DP N NRRI ILV +++ Sbjct: 236 RMARVVGLASSVLFDEKDPYNPVNRRISILVLNKK 270 >gi|261252277|ref|ZP_05944850.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP 102891] gi|260935668|gb|EEX91657.1| Flagellar motor rotation protein MotB [Vibrio orientalis CIP 102891] Length = 313 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 122/337 (36%), Gaps = 49/337 (14%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L W +AD M++LM FF+++ + D K I N Sbjct: 3 EEQPKCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ +++ G +++ QR Sbjct: 63 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR---- 118 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 D K T + +N ++ + + + Sbjct: 119 -------------------------DQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQ 153 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+ L + I L + ++ E I I I R F + S+ P+ Sbjct: 154 ELETLMESIKKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 207 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++++I +++ I + GHTD + R NW LS RA S Q + K G + +R Sbjct: 208 LVRQIADLVKDVPGRIRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQEMEKVRGFNHER 267 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 + ++ G A +D S NRR++I + + Sbjct: 268 L-RVRGMADTEPLGPNDTEAQRSRNRRVEISIMQGEA 303 >gi|258621630|ref|ZP_05716662.1| flagellar motor protein [Vibrio mimicus VM573] gi|262165143|ref|ZP_06032880.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223] gi|258586102|gb|EEW10819.1| flagellar motor protein [Vibrio mimicus VM573] gi|262024859|gb|EEY43527.1| Flagellar motor rotation protein MotB [Vibrio mimicus VM223] Length = 319 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 49/333 (14%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 4 EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ ++D + G +++ QR Sbjct: 64 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLDFQEGDSDRAGGNQRDSGK 123 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +++ S + + ++ + A + Sbjct: 124 LTGGQSAESSTQDNQNTQSEMQQQQ-----------------------------AKAMSE 154 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +++ +A+ I LS + + E I I I R F + S+ P+ Sbjct: 155 QMETVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++++I +++ + + GHTD + R NW LS RA S Q + K G R Sbjct: 209 LVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQR 268 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 + ++ G A + +D NRR++I + Sbjct: 269 L-QVRGMADTQPIGPNDTEAQRALNRRVEISIL 300 >gi|149184216|ref|ZP_01862534.1| OmpA/MotB [Erythrobacter sp. SD-21] gi|148831536|gb|EDL49969.1| OmpA/MotB [Erythrobacter sp. SD-21] Length = 276 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 140/337 (41%), Gaps = 65/337 (19%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G N+ II KK+ + + ++ G+WK+ YADF+T +MAFFL++W++ AT +D +K Sbjct: 3 GAATGRNEPAPIIVKKITVVEAGHHGGAWKVAYADFVTAMMAFFLLLWLLGATTEDQRK- 61 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 G+ D P T + ++ Sbjct: 62 -----------------GLADYFTP-----------------TLVKTKEQSAGSDGMLGG 87 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 L + Y + Q+ ++ RD+ G KE + ++ Sbjct: 88 ASLTDVDNYPHAAGQTGTNSLTIPRDATGGP-------------KEGVATIKRINSRVSK 134 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ K L+ L ++ V T TGI I ++D N MF +++ Sbjct: 135 MIESDKELKRLMRQ----------------VRMIDTTTGIRIDLVDDANFSMFSLGTTVL 178 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG 303 + +L I LA I++RGHTDA +R +R +NW LS RA Q L++ G Sbjct: 179 TNDARELLVVIAAALAPEGGKITVRGHTDALRYRYPSRVNNWSLSAGRAEETRQTLIREG 238 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++++R +I G A I +P + NRRI I +ED Sbjct: 239 INQERFRRIEGVAATEPLIGDNPSDPRNRRISISLED 275 >gi|28897464|ref|NP_797069.1| flagellar motor protein MotB [Vibrio parahaemolyticus RIMD 2210633] gi|153840267|ref|ZP_01992934.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|260876424|ref|ZP_05888779.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034] gi|28805676|dbj|BAC58953.1| sodium-driven polar flagellar protein MotB [Vibrio parahaemolyticus RIMD 2210633] gi|149746069|gb|EDM57199.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|308092849|gb|EFO42544.1| flagellar motor protein MotB [Vibrio parahaemolyticus AN-5034] gi|328472526|gb|EGF43389.1| flagellar motor protein MotB [Vibrio parahaemolyticus 10329] Length = 315 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 124/334 (37%), Gaps = 49/334 (14%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S S D ++ + S ++E Sbjct: 127 GGQSPETSTQSNQSAESDMQQQQSEEMSQEMET--------------------------- 159 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 160 --LMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ I GHTD + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 ++ G A + + D + NRR++I + + Sbjct: 271 RVRGMADTEPLVPNDSDENRALNRRVEISIMQGE 304 >gi|99082778|ref|YP_614932.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99039058|gb|ABF65670.1| Chemotaxis motB protein (Motility protein B) [Ruegeria sp. TM1040] Length = 279 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 122/310 (39%), Gaps = 57/310 (18%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL+MW++NAT + +K + YF+P + G Q Sbjct: 27 AWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGLADYFSPSIPLSRVSGGGNGAFQG--- 83 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 D E + +G+T + +++ QQS+ + + R Sbjct: 84 -------DTMFTEDVKPQ---NGVGATKENPTDASRAQGETGVADDQQSDAAEEASFRQI 133 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E+ +V+ ++ Sbjct: 134 EEALMGRGG-------------------------------------------ESMVSIDM 150 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + ++ T G++I + + + +F+ S P +L+ + V + ++I GH Sbjct: 151 ARHIVTRVTDEGLIIELFETEDATLFEADSERPTVLMRDLLRMVARVTSGVENNVAIGGH 210 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 ++P W LS RA ++L G+S RIS+++GFA L + +PM+ N Sbjct: 211 VASTPVVIANNPVWALSHARADQTRELLQAGGMSAKRISRVTGFADRDL-ASQNPMSERN 269 Query: 332 RRIDILVEDR 341 RI I + + Sbjct: 270 NRITITLLRK 279 >gi|118588413|ref|ZP_01545822.1| probable chemotaxis protein [Stappia aggregata IAM 12614] gi|118439119|gb|EAV45751.1| probable chemotaxis protein [Stappia aggregata IAM 12614] Length = 285 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 122/315 (38%), Gaps = 53/315 (16%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQN 88 W + +AD M++L+ FF+++ + D + + + FG + GI + + Sbjct: 13 APDWLVTFADLMSLLVCFFVLIISFSIQDKEKLQVVAGSMREAFGVKDSSRKTGIIEVEG 72 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P R + I++ ++ + ++ + +R + ++ +++ K Sbjct: 73 IPIRDYM--------KDISQVEQEMDSDFSQERHEKRRKQGPEANTHDTLEADIEKPRQF 124 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + A ++ Q++ + Sbjct: 125 ATA---------------------------------AASLRQAWQEMPE----------I 141 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 I ++ E T G+ I ++DQ MF + S P T ++ K+ VL+ I I Sbjct: 142 TEISSNIILEETEEGLNIMLVDQDGRSMFREGSKYPYETTRRLIAKMAPVLSQMPNRIEI 201 Query: 269 RGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHT A + + W LS +RA A Q+L + GV +++ + G A +DP Sbjct: 202 TGHTTAGRQSIDPSYTGWELSSERANIARQILSEYGVPDNQFYSVVGKADTEPLFPNDPY 261 Query: 328 NSANRRIDILVEDRQ 342 +ANRRI IL++ + Sbjct: 262 LAANRRIGILLKAEE 276 >gi|85706141|ref|ZP_01037236.1| putative chemotaxis MotB protein [Roseovarius sp. 217] gi|85669305|gb|EAQ24171.1| putative chemotaxis MotB protein [Roseovarius sp. 217] Length = 287 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 128/332 (38%), Gaps = 54/332 (16%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N +IIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K I Y Sbjct: 4 HSNAAPVIIKRKKIVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQQRKGISDY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P N+I D +SV + + Sbjct: 64 FSP--------------------SVPINRISGGGDGAFGGDSVFSEDTLVQNGTGASQRL 103 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +N + K SL+ ++ + + Sbjct: 104 ATSNRQANGENVAIEKGSLSAGAQ-------------------------------VEAEA 132 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++D+ + + LVAD ++ ++ T ++I I D +F+ + P Sbjct: 133 FAAIEDMLR--GGSGESLVADETLRHIVTRLTDEELVIEIFDLPQAQLFEVDGVVATPLL 190 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + +++ GHT A P W LS RA Q+L G+S R Sbjct: 191 KDLTALLASAANLVVNDVALAGHTRAQPITLARNPVWDLSSSRANQFRQMLEAEGLSAKR 250 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + +I+G A + DPM+ N R+++++ Sbjct: 251 MRRITGHADRTSAV-LDPMDLRNNRLEMILLR 281 >gi|315122280|ref|YP_004062769.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495682|gb|ADR52281.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 117/158 (74%), Positives = 137/158 (86%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 MKRKKR+QDL +KIS+TLSGLVA++IVKG+LF+TT G+LISIID NTPMFDKSSSIPL Sbjct: 1 MKRKKRMQDLEQKISTTLSGLVANHIVKGILFKTTPNGMLISIIDHNNTPMFDKSSSIPL 60 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 PE I++LQKIGE L+ S E ISI GHTDASPFR+ DNW+LSLDRAYS YQ+LMKSG+S Sbjct: 61 PEMILILQKIGEALSQSNENISIEGHTDASPFRHSTGDNWKLSLDRAYSTYQILMKSGIS 120 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E RISKISG A H KI+SDPMN+ANRRI+ILV+D +G Sbjct: 121 EKRISKISGLAQHNPKISSDPMNAANRRIEILVQDGEG 158 >gi|315180895|gb|ADT87809.1| sodium-driven polar flagellar protein [Vibrio furnissii NCTC 11218] Length = 320 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 59/336 (17%), Positives = 122/336 (36%), Gaps = 47/336 (13%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 3 EQKCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ +++ G ++ QR Sbjct: 63 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQRDAGQ 122 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + + + + + +++ + + Sbjct: 123 LTGGQSPETATQDNQNTET---------------------------EMQQQQAQSQSMSE 155 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + + I L + + E I+I I R F + S+ P+ Sbjct: 156 EMETVLESIKKALQREIEQGA---IEVENLGQQIVIRI---REKGAFPEGSAFLQPKFRP 209 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++++I +++ ++ + GHTD + R NW LS RA S Q + K G + R Sbjct: 210 LVRQIADLVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVKGFNHQR 269 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + ++ G A +D S NRR++I + + Sbjct: 270 L-QVRGMADTDPLGPNDTEAQRSRNRRVEISIMQGE 304 >gi|149203099|ref|ZP_01880070.1| OmpA/MotB [Roseovarius sp. TM1035] gi|149143645|gb|EDM31681.1| OmpA/MotB [Roseovarius sp. TM1035] Length = 287 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 54/334 (16%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N + +IIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K I Y Sbjct: 4 QSNAKPVIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEQQRKGISDY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P P R+S E + L+ GS + + Sbjct: 64 FSP---------------TVPISRTSGGGDGAFGGESVFSQETLLQSGSGASQPLATSSQ 108 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +G +L + + L S E Sbjct: 109 QVRGEMG---------------LVEGGNLSADQEADAQAFSTIEAMLTGRSGES------ 147 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +V+D++++ ++ T G++I I + +F+ + P Sbjct: 148 -----------------MVSDDLLRHIVTRVTDEGLVIEIFELPGALLFEPDQTSPTRLL 190 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + ++ GHT A P + W LS R Q L +G++ R Sbjct: 191 QDLSMLLASAANLVINDAALAGHTRARPITLVRNPVWDLSTARVDQFRQRLEDAGLAAKR 250 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 I +I+G A + SDPM+ N R+++++ + Sbjct: 251 IRRIAGHADRSPAV-SDPMDLRNNRLELILLRSE 283 >gi|39935079|ref|NP_947355.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris CGA009] gi|192290612|ref|YP_001991217.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|39648930|emb|CAE27451.1| putative chemotaxis protein motB1 [Rhodopseudomonas palustris CGA009] gi|192284361|gb|ACF00742.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 274 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 122/326 (37%), Gaps = 68/326 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76 KKK A + + W + +AD M +LM+FF+++ + D + FG Sbjct: 3 KKKKAEEHAGGHG--WFVTFADLMGLLMSFFVMLVAFSTQDKAKLMIVAGSMREAFGVQN 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 GI + P R Sbjct: 61 DARYSGIIENDGLPTRGKV----------------------------------------- 79 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + +EH L+ ++ + + ++E + + ++ LQ++ Sbjct: 80 -KNTEHVNPELSTAKPSPGEVTRDEGINTKEDREFA----------LASASLRQALQNMP 128 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + K ++FE T+ G+ + I+DQ MF S +P T ++LQ++ Sbjct: 129 E----------ISELSKNIMFEETKQGLNLEIMDQDGRSMFADGSKVPFERTRLLLQRLA 178 Query: 257 EVLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + ++I GHT + P R+ + W LS DRA S Q+L + G+ I ++G Sbjct: 179 VPLRATPLRVTIVGHTSSGLMPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTG 237 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 A + DP +ANRR+ I + Sbjct: 238 KADSQPLFPDDPSIAANRRVTITLMR 263 >gi|260767264|ref|ZP_05876205.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] gi|260617772|gb|EEX42950.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] Length = 320 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 59/336 (17%), Positives = 122/336 (36%), Gaps = 47/336 (13%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 3 EQKCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ +++ G ++ QR Sbjct: 63 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGDADRAGGTQRDAGQ 122 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + + + + + +++ + + Sbjct: 123 LTGGQSPETATQDNQNTET---------------------------EMQQQQAQSQSMSE 155 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + + I L + + E I+I I R F + S+ P+ Sbjct: 156 EMETVLESIKKALQREIEQGA---IEVENLGQQIVIRI---REKGAFPEGSAFLQPKFRP 209 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++++I +++ ++ + GHTD + R NW LS RA S Q + K G + R Sbjct: 210 LVRQIADLVKDVPGIVRVSGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVKGFNHQR 269 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + ++ G A +D S NRR++I + + Sbjct: 270 L-QVRGMADTDPLGPNDTEAQRSRNRRVEISIMQGE 304 >gi|163742566|ref|ZP_02149952.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10] gi|161384151|gb|EDQ08534.1| chemotaxis protein MotB [Phaeobacter gallaeciensis 2.10] Length = 278 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 123/311 (39%), Gaps = 60/311 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFF++MW++NAT + +K G+ D +P Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRK------------------GLADYFSP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + +S +S+ + Sbjct: 67 ------------------------------------SIPLSRVSGGGNGAFNGDSMFTEE 90 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADN 210 K ++ ++D+ + ++ + A ++ + L +++ +V+ Sbjct: 91 IKPQNGTGASDISPADAQQAKGDSGVEQDKDREAAD--EQFRALEEQLKGRGGESMVSIE 148 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + ++ T G+++ + D +P+F + ++ P +++ + V I+I G Sbjct: 149 MAQHIITRVTDEGLVVELFDTEESPLFKEGTAEPTLLFRDIVKMVSRVTGVVENNIAIGG 208 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 H + W LS RA + +L G R+ +++G A +L S+PM++ Sbjct: 209 HIRSHAVVVANNPVWELSHARADATRVMLESGGTKSKRMHRVTGHADRKL-TDSNPMSAR 267 Query: 331 NRRIDILVEDR 341 N R++I++ + Sbjct: 268 NNRVEIILLRK 278 >gi|316934820|ref|YP_004109802.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602534|gb|ADU45069.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 273 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 119/323 (36%), Gaps = 66/323 (20%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 + + W + +AD M +L+AFF+++ + D K + FG Sbjct: 3 KKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDTQKLKIVAGSMREAFGVQSDAR 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + P R + Sbjct: 63 YSGIIENDGLPTRGKV------------------------------------------KN 80 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +EH L+ ++ + + ++E + + ++ LQ++ + Sbjct: 81 TEHVNPELSTAKPSPGEVTRDEGINTKEDREFA----------LASASLRQALQNMPE-- 128 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K ++FE T+ G+ + I+DQ MF S +P T ++LQ++ L Sbjct: 129 --------IAELSKNIMFEETKQGLNLEIMDQDGRSMFADGSRVPFERTRLLLQRLAVPL 180 Query: 260 AHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + ISI GHT + P R+ + W LS DRA S Q+L + G+ I ++G + Sbjct: 181 RATPLRISIVGHTSSGLLPERS-DYNGWDLSSDRANSVRQILEREGLPGSHIFAVTGKSD 239 Query: 318 HRLKIASDPMNSANRRIDILVED 340 + DP +ANRR+ I + Sbjct: 240 SQPLFPEDPSIAANRRVTITLMR 262 >gi|86147426|ref|ZP_01065738.1| flagellar motor protein [Vibrio sp. MED222] gi|85834719|gb|EAQ52865.1| flagellar motor protein [Vibrio sp. MED222] Length = 315 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 49/333 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 P L W +AD M++LM FF+++ + D K I N Sbjct: 7 CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + I ++ P R ID+ + + IT+ +++ G + + R + + Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 +++ S H N +++ A ++ + ++ Sbjct: 127 GKSAEVSAH-----------------------------NNQNSESDQQQQQAQEQSQEME 157 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L + ++ E I+I I R F S+ P+ +++ Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 ++ E++ ++ I GHTD + R NW LS RA S Q + K G S R+ + Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G A +D S NRR++I + + Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303 >gi|163738038|ref|ZP_02145454.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] gi|161388654|gb|EDQ13007.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] Length = 278 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 123/311 (39%), Gaps = 60/311 (19%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFF++MW++NAT + +K G+ D +P Sbjct: 27 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRK------------------GLADYFSP-- 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + +S +S+ + Sbjct: 67 ------------------------------------SIPLSRVSGGGNGAFNGDSMFTEE 90 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADN 210 K ++ ++D+ + ++ + A ++ + L +++ +V+ Sbjct: 91 IKPQNGTGASDISPADAQQAKGDSGVEQDKDREAAD--EQFRALEEQLKGRGGESMVSIE 148 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + ++ T G+++ + D +P+F + ++ P +++ + V I+I G Sbjct: 149 MAQHIITRVTDEGLVVELFDTEESPLFKEGTAEPTLLFRDIVKMVSRVTGVVENNIAIGG 208 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 H + W LS RA + +L G R+ +++G A +L S+PM++ Sbjct: 209 HIRSHAVVVANNPVWELSHARADATRVMLESGGTRSKRMHRVTGHADRKL-TDSNPMSAR 267 Query: 331 NRRIDILVEDR 341 N R++I++ + Sbjct: 268 NNRVEIILLRK 278 >gi|91976556|ref|YP_569215.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91683012|gb|ABE39314.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 273 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 115/322 (35%), Gaps = 64/322 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 + + W + +AD M +L+AFF+++ + D D K + FG + Sbjct: 3 KKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDKDKLKIVAGSMREAFGVQNDSR 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + P R + Sbjct: 63 YSGIIENDGLPTRGKV------------------------------------------KN 80 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +EH L+ ++ + + +E + + ++ LQDL + Sbjct: 81 TEHVNPELSTSKPAPGEVTRDEGVNTKEEREFA----------LASASLRQALQDLPE-- 128 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+FE T+ G+ + I+DQ MF S P T ++LQ++ L Sbjct: 129 --------ISELSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRLLLQRLAAPL 180 Query: 260 AHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + +SI GHT A + + LS DRA Q+L + G+ I ++G A Sbjct: 181 RATPLRVSIVGHTSAGSVSQRSDYNGFDLSADRANVVRQILEREGLPVSHIFAVTGKADT 240 Query: 319 RLKIASDPMNSANRRIDILVED 340 + DP +ANRR+ I + Sbjct: 241 QPLFPEDPSIAANRRVTITLMR 262 >gi|119947181|ref|YP_944861.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37] gi|119865785|gb|ABM05262.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37] Length = 306 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 112/323 (34%), Gaps = 72/323 (22%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + +WK+ +AD M LM FLV+W + D K+ I YF Sbjct: 14 GRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYFR---------- 63 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G + ++ + N S Sbjct: 64 ----------------------------------TGQMSTPQERMFAQKNSLVSIPLMSS 89 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 N+ D+ + + ++ + KRL DL ++I Sbjct: 90 AKDNNTDINDTVNNALIQGEYNTQEELQFLM------------------KRLDDLVEEID 131 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + +L E G+ I + + M+++ + P +L + V Sbjct: 132 A----------SNNILIEVIPDGLRILLTASEDQKMYERGGTQLTPFYEDMLLEFSSVFN 181 Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I GHTD++P+ NW LS RA SA +++ G+ + I+++ G A+ + Sbjct: 182 AIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTKP 241 Query: 321 KIASDPMNSANRRIDILVEDRQG 343 + ++S NRR+++++ RQ Sbjct: 242 IDKQNELSSINRRVEVIILTRQA 264 >gi|218710365|ref|YP_002417986.1| flagellar motor protein MotB [Vibrio splendidus LGP32] gi|218323384|emb|CAV19561.1| Flagellar motor protein [Vibrio splendidus LGP32] Length = 315 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 49/333 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 P L W +AD M++LM FF+++ + D K I N Sbjct: 7 CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + I ++ P R ID+ + + IT+ +++ G + + R + + Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 +++ S H N +++ A ++ + ++ Sbjct: 127 GKSAEVSAH-----------------------------NNQNSESDQQQQQAQEQSQEME 157 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L + ++ E I+I I R F S+ P+ +++ Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 ++ E++ ++ I GHTD + R NW LS RA S Q + K G S R+ + Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G A +D S NRR++I + + Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303 >gi|84394351|ref|ZP_00993072.1| flagellar motor protein [Vibrio splendidus 12B01] gi|84375010|gb|EAP91936.1| flagellar motor protein [Vibrio splendidus 12B01] Length = 315 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 121/333 (36%), Gaps = 49/333 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 P L W +AD M++LM FF+++ + D K I N Sbjct: 7 CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + I ++ P R ID+ + + IT+ +++ G + + R + + Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + S H + +++ A + + ++ Sbjct: 127 GKSPEVSTH-----------------------------DNQNSESDQQQQQAEAQSQEME 157 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L + ++ E I+I I R F S+ P+ +++ Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 ++ E++ ++ I GHTD + R NW LS RA S Q + K G S R+ + Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G A +D S NRR++I + + Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303 >gi|78485775|ref|YP_391700.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78364061|gb|ABB42026.1| Flagellar motor protein MotB [Thiomicrospira crunogena XCL-2] Length = 296 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 118/336 (35%), Gaps = 71/336 (21%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +Q IIIK+ + G+W K A + Sbjct: 2 SEEQSIIIKRLTKCPHCAH-GGAW----------------------------KVAFADFM 32 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + L I + + + Sbjct: 33 TAAMAFFLM---------------------LWILSGVNDEEMKAMAEYFRDPTVIEASPQ 71 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + QS + + K ++ D E + K Sbjct: 72 VLVPSKEAGQSSDSMIDMGGFKDTPKGSIENEDGE-------------------AKAQEK 112 Query: 190 KRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +++DL ++I +S + + + + E T G+ + ++D R PMF +P Sbjct: 113 AQMEDLKRQIEQKISENPITNELKNQLKIEVTPNGLQVQVLDDRKRPMFGSGVDLPKDYA 172 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+++G VLA + ISI GHTD+S + N NW LS DRA +A ++L+ GV E Sbjct: 173 AKLLKEVGSVLAQTNNRISIAGHTDSSGYHSNAEYTNWELSADRANAARRLLLDGGVGEK 232 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +I+++ G + +P N NRRI I+V +++ Sbjct: 233 KIAQVVGLSDTVPFDKENPYNPRNRRISIIVLNKEA 268 >gi|148976605|ref|ZP_01813292.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3] gi|145963956|gb|EDK29214.1| flagellar motor protein MotB [Vibrionales bacterium SWAT-3] Length = 315 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 121/333 (36%), Gaps = 49/333 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 P L W +AD M++LM FF+++ + D K I N Sbjct: 7 CKCPPPGLPQWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVK 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + I ++ P R ID+ + + IT+ +++ G + + R + + Sbjct: 67 DIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESERAGGTMRDQGKMTG 126 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + S H + +++ A + + ++ Sbjct: 127 GKSPEVSTH-----------------------------DNQNSESDQQQQQAEAQSQEME 157 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L + I L + ++ E I+I I R F S+ P+ +++ Sbjct: 158 TLMESIKKALEREIDQGAIE---VENLGQQIVIRI---REKGAFPSGSAFLQPKFRPLVR 211 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 ++ E++ ++ I GHTD + R NW LS RA S Q + K G S R+ + Sbjct: 212 QVAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-R 270 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G A +D S NRR++I + + Sbjct: 271 VRGMADTEPVEPNDTEWQRSLNRRVEISIMQGE 303 >gi|224825768|ref|ZP_03698872.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224601992|gb|EEG08171.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 325 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 129/338 (38%), Gaps = 60/338 (17%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 DK +E +I KK D + G+WK+ +ADF+ LM FLVMW++ + + +T + Sbjct: 4 DKKKEGTAAVI-KKVSRRQDDGGHSGAWKVAFADFVLALMCLFLVMWLLASREQETMAQL 62 Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + +P +Q++I+ H + +L G + Sbjct: 63 LR----------------NGGGSPLAEGTQSRIEHQGTPHGSLIPRELVPGQQATES--- 103 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + KS+ +++ L Sbjct: 104 ---------------------------RPNSQVKSSAQPSALDDGNGAKLRRRYDSAADL 136 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K K + DL+ V + + T G+ + + D MF++ S++ Sbjct: 137 QKLAKMMSDLS----------VEAGLAGNIQTVITPYGLRVMLHDTDKQGMFERGSAVIN 186 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKS 302 +LQK+G++ AH + + GHTD+ ++ NW LS +RA +A L+ Sbjct: 187 ERFKHLLQKMGQMFAHIDNQLLLVGHTDSLQYKGQDYAAFSNWSLSSNRAMAARMQLLLG 246 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 G++ + I ++ G A A P + NRRI++LV Sbjct: 247 GMASNGILQVVGMADRAPLDARHPDAALNRRIELLVLT 284 >gi|90423604|ref|YP_531974.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90105618|gb|ABD87655.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 275 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 115/323 (35%), Gaps = 64/323 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 + + W + +AD M +L+AFF+++ + D K + FG + Sbjct: 3 KKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDTKKLKIVAGSMREAFGVQSDSR 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G+ + + I + Sbjct: 63 YSGVLE------------------------------------------TDGIPTRGKVKN 80 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 H ++ + S E + L + ++ LQDL + Sbjct: 81 KAHVAIDDASNTPNPDEAGDSKAAGAQTQAEREFAL--------ASASLRQALQDLPE-- 130 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K ++FE T+ G+ + IIDQ MF S +P T +++QK+ L Sbjct: 131 --------LTELSKNIMFEETKEGLNLEIIDQDGRSMFADGSKVPFERTRLLIQKLAAPL 182 Query: 260 AHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + +SI GHT A P R + + LS DRA + Q+L + G+ + +SG A Sbjct: 183 RATPLRVSIVGHTSAGLMPGRT-DYNAFDLSSDRANAVRQILEREGLPTSHVFAVSGKAD 241 Query: 318 HRLKIASDPMNSANRRIDILVED 340 + DPM +ANRR+ I + Sbjct: 242 SQPLFPDDPMLAANRRVTITLMR 264 >gi|238785460|ref|ZP_04629444.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC 43970] gi|238713615|gb|EEQ05643.1| hypothetical protein yberc0001_17840 [Yersinia bercovieri ATCC 43970] Length = 380 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 73/304 (24%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+++ + I YF K +T+ +P + Sbjct: 1 MTAMMAFFLVMWLLSVSSPQQLTQIADYFRTPLKVALTSGDKSSSSTSPIPGGGDDP--- 57 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 +++ ++ K Sbjct: 58 --------------------------------------------------TQQVGEVRKH 67 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 D E+S ++E Y L L ++ ++ RL+ L + L ++ + + Sbjct: 68 IDSEES--RKEEYRLNKLREKLDQLIESDPRLRALRPHL---LINMMEEGL--------- 113 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N Sbjct: 114 ----RIQIIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANG 169 Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E ++ ++ G A + NRRI ILV Sbjct: 170 ERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASDDPVNRRISILV 229 Query: 339 EDRQ 342 ++Q Sbjct: 230 LNKQ 233 >gi|289207762|ref|YP_003459828.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943393|gb|ADC71092.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 325 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 142/335 (42%), Gaps = 58/335 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q II+KKKV ++ GSWK+ +ADF +MAFFL++W++ A DD+ + I +Y Sbjct: 4 EDKTQPIIVKKKVVK--GGHHGGSWKVAFADFAIAMMAFFLLLWLLAALDDEQRAGISEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F QN + + G ++ + Sbjct: 62 F-------------------------QNPSAFVGEAAAPGQAPGDGTGVDPSLIDFEGMP 96 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I E + D E +L ++ D E L L + A+++ Sbjct: 97 ELI------HDPEAMGAPMGLDDEALDELAEARDREA---------LEVLQEALEEALEQ 141 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L+ ++ L + T G+ I IID+ N PMFD +SS PLP Sbjct: 142 SQALEPYKDQL----------------LLDITPEGLRIQIIDRENRPMFDTASSTPLPHA 185 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+++ ++ ISI GHTDA P NW LS DRA +A + L+ G + Sbjct: 186 DAILRELASLINKVPNRISITGHTDARPLLRPDYSNWELSADRANAARRALIAGGAESGQ 245 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++++ G A DP + NRRI I+V +++ Sbjct: 246 VARVVGLADSVPFTRDDPEAAINRRISIIVLNQEA 280 >gi|146312113|ref|YP_001177187.1| flagellar motor protein MotB [Enterobacter sp. 638] gi|145318989|gb|ABP61136.1| OmpA/MotB domain protein [Enterobacter sp. 638] Length = 309 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 74/340 (21%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +I+KK+ + GSWKI YADFMT + Sbjct: 2 KNQSHP-IVIVKKRKHKGHGHGSHGSWKIAYADFMTA---------------------MM 39 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +F +++ K + I +++ + Q+K + Sbjct: 40 AFFLVMWLVSISSPKELIQIAEYFRTPLATAITGGPRISNSESPIPGGGDDFTQQKGEVK 99 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 E NI +++ Sbjct: 100 KEPNI-------------------------------------------------DELKKR 110 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + RL+ L + + ++ + + + G+ I IID +N PMF S+ Sbjct: 111 MEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVE 170 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303 +L+ I VL IS+ GHTD + N NW LS DRA ++ + L+ G Sbjct: 171 YYMRDILRGIAPVLNGIPNHISLSGHTDDFQYANGEKGYSNWELSADRANASRRELVAGG 230 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + + ++ ++ G + P ++ NRRI +LV ++Q Sbjct: 231 LDDGKVLRVVGMSSSMRVTDRGPEDAVNRRISLLVLNQQA 270 >gi|332162880|ref|YP_004299457.1| flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604276|emb|CBY25774.1| flagellar motor rotation protein MotB [Yersinia enterocolitica subsp. palearctica Y11] gi|325667110|gb|ADZ43754.1| Flagellar motor protein MotB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863328|emb|CBX73451.1| putative protein mbhA [Yersinia enterocolitica W22703] Length = 272 Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 63/310 (20%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94 + +ADF +MA F+V+WI+ ++ ++ I N K IF +Q+ S Sbjct: 1 MAFADFTLAMMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPS 51 Query: 95 QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154 ++K DS G Sbjct: 52 KSK---------------------------------------------SGGGKFSDSVDG 66 Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + K T ++ E P + L + + +++L + I+ S A + +K Sbjct: 67 HEQAKETKSNLAVEVPE-----PEQSLEELVDRSGREMEELTRIITQITSAYDAQSNLK- 120 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 E G+ I I D ++ MF +SS++ P +L ++ I I GHTDA Sbjct: 121 --MEVVPQGLRILIQDDKHRDMFQRSSAVLTPFFSRLLAELAPAFNEMDNKIIITGHTDA 178 Query: 275 SPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 S +R+ + +NW LS +RA A++ L+K G+ +DR+ +I+ A L +++P+ + NRR Sbjct: 179 SRYRDQVLYNNWNLSGERALMAHKALVKGGLDDDRVLQINAMAEQMLLDSAEPLAAKNRR 238 Query: 334 IDILVEDRQG 343 I+I+V + Sbjct: 239 IEIMVLTKTA 248 >gi|183598599|ref|ZP_02960092.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827] gi|188020776|gb|EDU58816.1| hypothetical protein PROSTU_01997 [Providencia stuartii ATCC 25827] Length = 317 Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 4/199 (2%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST- 202 K ++ ++ G K I + LP + + R + L + + Sbjct: 67 KTAINSGTKSGDATNPIPGGGKDIVFRDGDILPEP--NNKIEDQSNYRFEKLKQSLEQAI 124 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + + +L + G+ I I+D N PMF S+ P +L+ I +L Sbjct: 125 LKDPRLNELKPHLLIDMIDDGLRIQIVDSENRPMFMVGSAYVEPHMRDILRAIAPLLNDV 184 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ISI GHTD P+ N A +NW LS DRA ++ + L+ G+++D+I ++ G A Sbjct: 185 PNKISISGHTDDLPYANGANYNNWELSADRANASRRELIAGGLNQDKILRVVGMASSIHL 244 Query: 322 IASDPMNSANRRIDILVED 340 ++ + NRRI I+V + Sbjct: 245 DKNNGLAPVNRRISIIVLN 263 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 54/126 (42%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N+ II KK + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 4 NNAHIIRVKKRVASHQNGHGGSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFR 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K + + D NP ++ + D N+ + +K Q LE Sbjct: 64 TPLKTAINSGTKSGDATNPIPGGGKDIVFRDGDILPEPNNKIEDQSNYRFEKLKQSLEQA 123 Query: 131 IFYLSN 136 I Sbjct: 124 ILKDPR 129 >gi|114563951|ref|YP_751465.1| flagellar motor protein MotB [Shewanella frigidimarina NCIMB 400] gi|114335244|gb|ABI72626.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 308 Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 36/328 (10%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K D P W +AD M++LM FF+++ + D K I Sbjct: 3 KAKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSM---------- 52 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 K F QN E K I D ++ + + I Y + + Sbjct: 53 -KYAFGVQNKVEVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTQPTIEYQAGEED 111 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S + + G + +++ K+ A ++ + D KK+ Sbjct: 112 SAGGTQKQSGEQRGGNAAATAQQEAEAVKKD--------------AASSQENINDQVKKM 157 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + D + E+ I+I I R F S P+ +++ IGE+L Sbjct: 158 AEKLNEEIVDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPKFKPIVRSIGELL 211 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 +I++ GHTD + N NW LS RA + L + SG E R+ K+ G A Sbjct: 212 KDVPGIITVSGHTDGADINNELYSSNWELSSQRAVAVAHELRRVSGFDESRM-KVVGEAS 270 Query: 318 HRLKIASDPMN--SANRRIDILVEDRQG 343 +R +A+D + NRR++I +E + Sbjct: 271 NRPLVANDSNENQARNRRVEISIEQGKA 298 >gi|296282270|ref|ZP_06860268.1| OmpA/MotB domain-containing protein [Citromicrobium bathyomarinum JL354] Length = 273 Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 66/332 (19%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N II+KK V + + ++ G+WK+ YADF+T +MAFFL+MW++ AT +D ++ Sbjct: 7 DNLPPIIVKK-VTVVEGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTEDQRR------ 59 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 G+ D P T V N L + Sbjct: 60 ------------GLADYFTP-----------------TLVKVKDSGAGANGLLSGASLTD 90 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 Y + Q+ + ++ RD+ G +E + ++ +++ Sbjct: 91 VDDYPNRQGQTGNKGLTVPRDAMGGP-------------REAARMIERITSRTKDRLEKD 137 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL L +I T G+ I ++D + MF+ +++ + Sbjct: 138 PRLAKLMSQIK----------------MVDTTEGVRIDLVDDADFSMFNLGTTVLTRDAA 181 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L I + + I +RGHTD+ ++N R +NW LS RA + Q LM G+ +D Sbjct: 182 ELLAAIAQAIEPEKREIIVRGHTDSLKWKNPGRINNWSLSAGRAEATRQTLMNEGIPDDS 241 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +I G A L + DP + NRRI I++ + Sbjct: 242 FRRIEGVADTELLVKDDPADPRNRRISIVLAN 273 >gi|261344163|ref|ZP_05971807.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541] gi|282567758|gb|EFB73293.1| chemotaxis MotB protein [Providencia rustigianii DSM 4541] Length = 306 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 2/161 (1%) Query: 182 KILAMKRKKRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 I++ R + L + + L + + +L + G+ I I+D N PMF Sbjct: 103 NIISGDANYRFEKLKENLEQAILQDPRLNELKPHLLIDMINDGLRIQIVDSANRPMFKVG 162 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S+I P +L+ I +L ISI GHTD P+ + NW LS DRA ++ + L Sbjct: 163 SAIVEPYMRDILRAIAPLLNDVPNRISISGHTDDLPYASEAYYSNWELSSDRANASRREL 222 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + G+ E +I ++ G A + + NRRI I+V + Sbjct: 223 IMGGMEEQKILRVVGMASSIHLDKENGLAPINRRISIIVLN 263 >gi|238919361|ref|YP_002932876.1| OmpA family protein [Edwardsiella ictaluri 93-146] gi|238868930|gb|ACR68641.1| OmpA family protein [Edwardsiella ictaluri 93-146] Length = 270 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 11/204 (5%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + +S + G D+ + E + K P +++ + ++RL+ L Sbjct: 74 GQRSSDSFSPIPGGGDDVTRK---EGEVRKFAADPDPKTRTDQMRLKRLRERLEQL---- 126 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 LS + ++ T G+ I I+D + PMF S+ P +L+ I +L Sbjct: 127 --ILSDPRLKLLRPHLMINMTDEGLRIQIVDSQKRPMFKNGSAQVEPYMRYILRAIAPIL 184 Query: 260 AHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 IS+ GHTD P+ N NW LS DRA ++ + LM G+ ++I ++ G A Sbjct: 185 NELPNKISLSGHTDDLPYANGEKGYSNWELSADRANASRRELMAGGLDSNKILRVVGMAD 244 Query: 318 HRLKIASDPMNSANRRIDILVEDR 341 + NRRI ILV ++ Sbjct: 245 TMNLHNMAGNAAENRRISILVLNK 268 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 2/190 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 I++KKK + ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 5 KQPVILVKKKRSSHAQASHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYFR 64 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K ++ + D +P + + D K + + + R Sbjct: 65 TPLKVALSGGQRSSDSFSPIPGGGDDVTRKEGEVRKFAADPDPKTRTDQMRLKRLRERLE 124 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 LS+ + + + +++G + ++ + K + + P + + A+ Sbjct: 125 QLILSDPRLKLLRPHLMINMTDEGLRIQIVDSQKRPMFKNGSAQVEPYMRYILRAIA--P 182 Query: 191 RLQDLAKKIS 200 L +L KIS Sbjct: 183 ILNELPNKIS 192 >gi|212709470|ref|ZP_03317598.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM 30120] gi|212687808|gb|EEB47336.1| hypothetical protein PROVALCAL_00512 [Providencia alcalifaciens DSM 30120] Length = 312 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 2/161 (1%) Query: 182 KILAMKRKKRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 I++ R + L + + L + + +L + G+ I I+D N PMF Sbjct: 103 NIISGDANYRFEKLKENLEQAILQDPRLNELKPHLLIDMINDGLRIQIVDSANRPMFKVG 162 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S+ P +L+ I +L ISI GHTD P+ + NW LS DRA ++ + L Sbjct: 163 SATVEPYMRDILRAIAPLLNDVPNRISISGHTDDLPYASEAYYSNWELSSDRANASRREL 222 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + G+ E ++ ++ G A + + NRRI I+V + Sbjct: 223 IMGGMDERKVLRVVGMASSIHLDKENGLAPVNRRISIIVLN 263 >gi|114762178|ref|ZP_01441646.1| chemotaxis protein MotB [Pelagibaca bermudensis HTCC2601] gi|114545202|gb|EAU48205.1| chemotaxis protein MotB [Roseovarius sp. HTCC2601] Length = 277 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 126/327 (38%), Gaps = 59/327 (18%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 +IIK+K ++ G+WK+ YADF+T +MAFF++MW++NAT + +K Sbjct: 9 PVIIKRKKVSGGDGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEKQRK---------- 58 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 G+ D +P + I + ++IF Sbjct: 59 --------GLADYFSP----------------------TIAISRVSGGGDGSLGGDSIFS 88 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + SL S+ I ++ + ++ Sbjct: 89 ENTLPRVGTGATSLRPTSQHAARGASDPGEADEIGAQDEAL---------------EAVE 133 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 DL + +++D +++ ++ T G+++ + P+FD + P + Sbjct: 134 DLL--MGRGGESMISDTLMRHIVTRVTDEGLVVELFATEEAPLFDAQGA-PTELLRALSG 190 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I V T ++I GH A P +W +S A ++L+ G+S+ RI++++ Sbjct: 191 VIAGVSDMVTNPLAIEGHVGAYPIVLARDPSWEVSTRHADRFRELLLADGLSKARINRVT 250 Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340 A ++PM+ N R++I+ Sbjct: 251 AHADREP-AKNNPMDPRNTRLEIIFLR 276 >gi|148554180|ref|YP_001261762.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148499370|gb|ABQ67624.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 334 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 57/334 (17%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 +N+ + IIIKK VA ++ G+WK+ YADF+T +MAFFL+MWI+ AT++ +K I Sbjct: 9 GRNEPEPRPIIIKKIVAEGHGGHHGGAWKVAYADFVTAMMAFFLLMWILGATNEKQRKGI 68 Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 YF P S G +N + Sbjct: 69 ADYFTPTMVQFKEKSAG-----------------------------------SNGIFGGE 93 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + + Y + Q+ S+ +D+ G+ KS ++ L L + K+ A Sbjct: 94 SVVDKDNYPHRAAQTGSKSISIPKDASGGE--KDGAGSAKSRDRVAFQKLKLLLQAKMAA 151 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 R ++ + V TR G+ I ++DQ + MF + Sbjct: 152 DPRLAKM-------------------MSNVRMVETREGLRIDLVDQADFAMFRSGTDELS 192 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGV 304 E +++++ EV + + +RGHTDA P+ +NW LS RA + + L GV Sbjct: 193 SEARALMKQVAEVTNFADNSVIVRGHTDAMPYSKGRTVNNWTLSAARAEATRRALSDFGV 252 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + R ++I G A +A DP + NRR+ I + Sbjct: 253 ANTRFARIEGVADREPYVAGDPYDPRNRRMSITL 286 >gi|307944455|ref|ZP_07659795.1| OmpA/MotB [Roseibium sp. TrichSKD4] gi|307772204|gb|EFO31425.1| OmpA/MotB [Roseibium sp. TrichSKD4] Length = 284 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 119/312 (38%), Gaps = 53/312 (16%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQN 88 W + +AD M++L+ FF+++ + D + + + FG + G+ + + Sbjct: 12 APEWLVTFADLMSLLVCFFVLIISFSIQDKEKLQVVAGSMAEAFGVKENSRKTGVIEVEG 71 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P R I S+ ++ + Sbjct: 72 IPIRQYMKDI-----------------------------------------SQVEQDMDS 90 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 SE+ D + E + ++ E + + A ++ Q++ + Sbjct: 91 DFSEEVHDRKRKQGPEANTHETEEAEIERPRQFATAAASLRQAWQEMPE----------I 140 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 I ++ E + G+ I ++DQ MF + S P T +L K+ VL+ + I Sbjct: 141 TEISSNIILEESEEGLNIMLVDQDGRSMFREGSKYPYETTRRLLAKMAPVLSQMPNRVEI 200 Query: 269 RGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHT A + A W LS +RA A Q+L + GV ++ + G + +DP Sbjct: 201 TGHTTAGGRSVDPAYTGWDLSAERANVARQILAEYGVPSNQFYAVIGKSDSEPLFPNDPY 260 Query: 328 NSANRRIDILVE 339 ++NRR++IL++ Sbjct: 261 LASNRRVEILLK 272 >gi|260574379|ref|ZP_05842383.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259023275|gb|EEW26567.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 280 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 141/337 (41%), Gaps = 62/337 (18%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G Q N + IIIK+K I ++ G+WK+ YADF+T +MAFFL+MWI+ AT + +K Sbjct: 4 GMAGQSNARPIIIKRKKIIKGGGHHGGAWKVAYADFVTAMMAFFLLMWILGATTEKQRKG 63 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + Y F P R S + + + Sbjct: 64 VADY---------------FSPTIPINRVSGGGEGMFGGDSVF----------------- 91 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 S + G + E++ + EN + +I Sbjct: 92 ---------------------SEQTMPQSGTGASDRSPTEQNQARGENADAEAQAAAQIA 130 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +++ K L L + + + ++ V+ + T G++I I D + P+F + + P Sbjct: 131 SVE--KALTALGGE------SMTMEAALRHVVTKVTDEGLVIEIFDLQEAPLFAEGTDDP 182 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P + + + EVL ++ +++ G+ A P I W LS RA + ++ +G+ Sbjct: 183 QPVLRDIAKMLAEVLGLASNSVAVNGYVKAYPIMMIDNPVWDLSAARAQAMRDLIQTAGL 242 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +R+ +ISG+A H+ + +DP N R+++++ R Sbjct: 243 PANRVQRISGYADHKP-VTADPTAIRNNRVEVILLRR 278 >gi|226327780|ref|ZP_03803298.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198] gi|225203484|gb|EEG85838.1| hypothetical protein PROPEN_01653 [Proteus penneri ATCC 35198] Length = 350 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 5/203 (2%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K ++ + G + E LP ++K L K++ + L + + + Sbjct: 66 KVAIEKGRFSGDATNPIPGGGRDPVYNEGDILPKGQEDKQL--NEKQQFRRLKENLEQVI 123 Query: 204 SGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ +L + G+ I IID+ N PMF S+ P +L I +L + Sbjct: 124 LNDPRLKDLKPHLLIDMMDEGLRIQIIDKANRPMFRVGSATVEPYMKDILTAIAPILNDT 183 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 IS+ GHTD P+ + A NW LS DRA ++ + L+ +G++E ++ ++ G A Sbjct: 184 PYKISLSGHTDDIPYASGAFKYSNWELSTDRANASRRELIGAGLNEWKVLRVVGMASTVH 243 Query: 321 KIASDPMNSANRRIDILVEDRQG 343 + D +ANRRI ILV +Q Sbjct: 244 LVKEDGFAAANRRISILVLTKQA 266 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 3/179 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N Q I +KK+ + G+WKI YADFMT +MAFFLVMW+++ + + +Y Sbjct: 2 KSNSQIIRVKKRGRKQHNAH-GGAWKIAYADFMTAMMAFFLVMWLLSISSPQELTRVAEY 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K + + D NP ++ + D I + K + Q+ + + Sbjct: 61 FRTPLKVAIEKGRFSGDATNPIPGGGRDPVYNEGD--ILPKGQEDKQLNEKQQFRRLKEN 118 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 L++ + + + L ++G + + + + + + P K+ + A+ Sbjct: 119 LEQVILNDPRLKDLKPHLLIDMMDEGLRIQIIDKANRPMFRVGSATVEPYMKDILTAIA 177 >gi|317491635|ref|ZP_07950071.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921182|gb|EFV42505.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 329 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Query: 179 SKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 S +RL+ L K+I L+ + +L G+ I IID +N PMF Sbjct: 101 SMPDPATKADSERLKKLRKQIDQLILTDPRLKALQPHLLINMMDEGLRIQIIDSQNRPMF 160 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295 + S+ P +L+ I +L IS+ GHTD P+ + NW LS DRA ++ Sbjct: 161 ENGSARVEPYMRDILRAIAPILNDVPNKISLSGHTDDLPYASGERGYSNWELSADRANAS 220 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + L+ G++E +I ++ G A + + NRRI ILV ++ Sbjct: 221 RRELIAGGLAEGKILRVVGMADTMSLKSQTSDAAINRRISILVLNKSA 268 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 4/190 (2%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N I++KK+ ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 5 NRPIILVKKRKPSKKGGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTKIAEYFR 64 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 +T +P + + + + K+ D + +++ + R + + Sbjct: 65 TPLAVALTHGDRSSASTSPIPGGGDDM--MQKEGEVAKSMPDPATKADSERLKKLRKQID 122 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 L++ + + L ++G + + + + + + P ++ + A+ Sbjct: 123 QLILTDPRLKALQPHLLINMMDEGLRIQIIDSQNRPMFENGSARVEPYMRDILRAIA--P 180 Query: 191 RLQDLAKKIS 200 L D+ KIS Sbjct: 181 ILNDVPNKIS 190 >gi|237731926|ref|ZP_04562407.1| flagellar motor protein MotB [Citrobacter sp. 30_2] gi|226907465|gb|EEH93383.1| flagellar motor protein MotB [Citrobacter sp. 30_2] Length = 309 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 7/213 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q +E+ + L G + S + ++K+ + RK+ Q Sbjct: 58 QIAEYFRTPLATAVTGGNRISNSQSPIPGGGDDYTQQQGEVNKQPNIDDLRKRMEQSRLS 117 Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 K+ L L+ + + + + + G+ I IID +N PMF S+ P +L Sbjct: 118 KLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL IS+ GHTD P+ N NW LS DRA ++ + L+ G+ + ++ Sbjct: 178 RAIAPVLNGIPNRISLSGHTDDYPYANGEKGYSNWELSADRANASRRELVSGGLDDGKVL 237 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A P ++ NRRI +LV ++Q Sbjct: 238 RVVGMAATMRLSDRGPEDAINRRISLLVLNKQA 270 >gi|268590004|ref|ZP_06124225.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131] gi|291314723|gb|EFE55176.1| chemotaxis MotB protein [Providencia rettgeri DSM 1131] Length = 305 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 191 RLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 R + L + + L + + +L + G+ I I+D N PMF S+ P Sbjct: 112 RFEKLKESLEQAILKDPRLNELKPHLLIDMINDGLRIQIVDSENRPMFKVGSATVEPYMR 171 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ I +L ISI GHTD + N A NW LS DRA ++ + L++ G+ E++ Sbjct: 172 DILRAIAPLLNDVPNRISISGHTDDLAYANGANYSNWELSSDRANASRRELIRGGMDENK 231 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + ++ G A D NRRI I+V + + Sbjct: 232 VLRVVGMASAIHLDKEDGFAPINRRISIIVLNDE 265 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 4/190 (2%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N +I KK + + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 4 NTPHVIRVKKRSSHHQNGHGGSWKIAYADFMTAMMAFFLVMWLISISSPQELTQIAEYFR 63 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + D NP ++ I D + ++ G+ N + + + Sbjct: 64 TPLSTAINPGSKSGDATNPIPGGGKDPI--FRDGDVMPEPNNIIDGNANYRFEKLKESLE 121 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 L + + +E + L G + + + K + + P ++ + A+ Sbjct: 122 QAILKDPRLNELKPHLLIDMINDGLRIQIVDSENRPMFKVGSATVEPYMRDILRAIA--P 179 Query: 191 RLQDLAKKIS 200 L D+ +IS Sbjct: 180 LLNDVPNRIS 189 >gi|226944522|ref|YP_002799595.1| flagellar motor protein [Azotobacter vinelandii DJ] gi|226719449|gb|ACO78620.1| Flagellar motor protein [Azotobacter vinelandii DJ] Length = 306 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 92/189 (48%), Gaps = 3/189 (1%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNIVK 213 +++ + + + E + + P +++ + + RL+ L ++I LS + + Sbjct: 78 ENVIPGGGPDPTFAEGERFRIDPQLASRLVDEQERARLRQLERRIREALSINPILKELKD 137 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 +L + T G+ I ++D PMF+ S+ P +L+ + +L I I GHTD Sbjct: 138 QILIDLTPEGLRIQLVDTEQRPMFEIGSARVAPYMRTLLRTLAPMLNELPNRIQISGHTD 197 Query: 274 ASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 + P+ NW LS DRA ++ + L+ G++ +++ + SG + P ++AN Sbjct: 198 SLPYAGGEAGYSNWELSADRANASRRELIAGGLALEKLLRTSGMSDRIPFEGVAPNDAAN 257 Query: 332 RRIDILVED 340 RRI ++V D Sbjct: 258 RRIAVIVLD 266 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 4/192 (2%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +++ +II ++ ++ G+WKI +ADFMT LMA FLV+W++ + + K A+ +YF Sbjct: 2 SERPVIIIRRKKRGGEGHHGGAWKIAFADFMTALMALFLVLWMLANSGEAQKAAVAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + +N + + + ++ ++ + ++LE Sbjct: 62 TPLVVALMGGDREGASENVIPGGGPDPTFAEGERFRIDPQLASRLVDEQERARLRQLERR 121 Query: 131 IFY--LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I N E L + +G + ++ + + + + P + + + Sbjct: 122 IREALSINPILKELKDQILIDLTPEGLRIQLVDTEQRPMFEIGSARVAPYMRTLLRTLA- 180 Query: 189 KKRLQDLAKKIS 200 L +L +I Sbjct: 181 -PMLNELPNRIQ 191 >gi|323498631|ref|ZP_08103623.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326] gi|323316329|gb|EGA69348.1| flagellar motor protein MotB [Vibrio sinaloensis DSM 21326] Length = 314 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 121/328 (36%), Gaps = 49/328 (14%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81 L W +AD M++LM FF+++ + D K I N + Sbjct: 12 GLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGT 71 Query: 82 GIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 I ++ P R ID+ + + IT+ +++ G +++ QR Sbjct: 72 SIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------- 118 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 D K T + +N ++ + + + L+ L + I Sbjct: 119 ----------------DQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQELETLMESI 162 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L + ++ E I I I R F + S+ P+ ++++I E++ Sbjct: 163 KKALEREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELV 216 Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 +I + GHTD + + R NW LS RA S Q + K G + R+ ++ G A Sbjct: 217 KDIPGIIRVSGHTDNQRIESELYRSNWDLSAQRAVSVAQEMEKVRGFTPQRL-RVRGMAD 275 Query: 318 HRLKIASDPM--NSANRRIDILVEDRQG 343 +D S NRR++I + + Sbjct: 276 TEPLGPNDTEAQRSRNRRVEISIMQGEA 303 >gi|283785634|ref|YP_003365499.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium ICC168] gi|282949088|emb|CBG88694.1| chemotaxis protein MotB (motility protein B) [Citrobacter rodentium ICC168] Length = 309 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQKGEVHKQPNIDELKKRMEQSRLSKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L++ G+ + ++ ++ G A P ++ NRRI +LV +RQ Sbjct: 212 WELSADRANASRRELVQGGLDDGKVLRVVGMAATMRLSDRGPEDAVNRRISLLVLNRQA 270 >gi|283832712|ref|ZP_06352453.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220] gi|291072391|gb|EFE10500.1| chemotaxis MotB protein [Citrobacter youngae ATCC 29220] Length = 309 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + + + + RL+ L + + ++ + + + G+ I Sbjct: 92 TQQQGEVHKQPNIDDLRKRMEQSRLRKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLSGHTDDYPYANGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVSGGLDDGKVLRVVGMAATMRLSDRGPEDAINRRISLLVLNKQA 270 >gi|254438344|ref|ZP_05051838.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307] gi|198253790|gb|EDY78104.1| hypothetical protein OA307_3214 [Octadecabacter antarcticus 307] Length = 275 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 125/335 (37%), Gaps = 65/335 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ N IIIK+K I ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K + Sbjct: 5 DKANAPVIIIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFLMMWLLNATTEQQRKGLAD 64 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF P IT + V Sbjct: 65 YFAP---------------------------------TITVSRVSGGGEGMFGGTNMMSD 91 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + L E ++ ++E L + E ++ + Sbjct: 92 DALVQDGTGQSGGVPIDGDLVGTQESAAEVAALQEVE--------ALLLGIGGESLVQQE 143 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ V+ T G++I + + + P+F S+ P P Sbjct: 144 -----------------------ALRHVVTRVTDEGLIIEVFARDDAPLFISESTEPAPV 180 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 I + T ++I GHT P R W +S RA + ++L G+ Sbjct: 181 LIELTTMFARTFDLVTNPVAIEGHTRTRPLVIAERPVWDISTGRAETVRRLLEAGGLDSL 240 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 RI++I+G A L + ++ N RI+I++ + Sbjct: 241 RIARITGNADRDL-ARVEALSVRNNRIEIILLRIE 274 >gi|86750474|ref|YP_486970.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86573502|gb|ABD08059.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 273 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 115/323 (35%), Gaps = 66/323 (20%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 + + W + +AD M +L+AFF+++ + D D K + FG Sbjct: 3 KKKREEAHGGHGWFVTFADLMALLLAFFVMLTAFSTQDKDKLKVVAGSMREAFGVQSDAR 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + + + + Sbjct: 63 YSGIIE------------------------------------------NDGLPTRGKVKN 80 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +EH L+ ++ K + +E + + ++ LQD+ + Sbjct: 81 TEHVNPELSTAKPSPGEVSKDEGIHTKEEREFA----------LASASLRQALQDMPE-- 128 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+FE T+ G+ + I+DQ MF S P T +LQ + L Sbjct: 129 --------ISELSKNVMFEETKQGLNLEIMDQDGRAMFADGSKAPFERTRRLLQSLAGPL 180 Query: 260 AHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + I+I GHT A P R+ + + LS DRA + Q+L + GV ++G + Sbjct: 181 RATPLRITIAGHTSAGLMPARS-DYNGFDLSADRANAVRQILEREGVPTSHFFAVTGRSD 239 Query: 318 HRLKIASDPMNSANRRIDILVED 340 + DP +ANRR+ I + Sbjct: 240 TQPLFPEDPAIAANRRVTITLMR 262 >gi|254225118|ref|ZP_04918732.1| chemotaxis protein PomB [Vibrio cholerae V51] gi|125622505|gb|EAZ50825.1| chemotaxis protein PomB [Vibrio cholerae V51] Length = 318 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 120/332 (36%), Gaps = 47/332 (14%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 4 EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ +++ + G +++ QR Sbjct: 64 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQ 123 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +++ S + + ++ + S Sbjct: 124 LTGGQSAETSVQDSQNTQSEMQQQQAQAMSEQ---------------------------- 155 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ +A+ I LS + + E I I I R F + S+ P+ Sbjct: 156 -METVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++++I E++ + + GHTD + R NW LS RA S Q + K + Sbjct: 209 LVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKDFDHLR 268 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 ++ G A + +D NRR++I + Sbjct: 269 LQVRGLADTQPLGPNDTEAQRATNRRVEISIL 300 >gi|15640909|ref|NP_230540.1| flagellar motor protein MotB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588125|ref|ZP_01677872.1| chemotaxis protein PomB [Vibrio cholerae 2740-80] gi|121728326|ref|ZP_01681356.1| chemotaxis protein PomB [Vibrio cholerae V52] gi|147674334|ref|YP_001216371.1| flagellar motor protein MotB [Vibrio cholerae O395] gi|153216012|ref|ZP_01950234.1| flagellar motor protein [Vibrio cholerae 1587] gi|153802297|ref|ZP_01956883.1| chemotaxis protein PomB [Vibrio cholerae MZO-3] gi|153817212|ref|ZP_01969879.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457] gi|153823690|ref|ZP_01976357.1| chemotaxis protein PomB [Vibrio cholerae B33] gi|153827046|ref|ZP_01979713.1| chemotaxis protein PomB [Vibrio cholerae MZO-2] gi|153830558|ref|ZP_01983225.1| chemotaxis protein PomB [Vibrio cholerae 623-39] gi|227081069|ref|YP_002809620.1| chemotaxis protein PomB [Vibrio cholerae M66-2] gi|229505502|ref|ZP_04395012.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286] gi|229510828|ref|ZP_04400307.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33] gi|229513008|ref|ZP_04402474.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21] gi|229517949|ref|ZP_04407393.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9] gi|229523310|ref|ZP_04412717.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80] gi|229525508|ref|ZP_04414913.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis VL426] gi|229530005|ref|ZP_04419395.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)] gi|229608521|ref|YP_002879169.1| flagellar motor protein MotB [Vibrio cholerae MJ-1236] gi|254285566|ref|ZP_04960530.1| chemotaxis protein PomB [Vibrio cholerae AM-19226] gi|254848028|ref|ZP_05237378.1| flagellar motor protein PomB [Vibrio cholerae MO10] gi|262191489|ref|ZP_06049674.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93] gi|297581278|ref|ZP_06943202.1| chemotaxis protein PomB [Vibrio cholerae RC385] gi|298498985|ref|ZP_07008792.1| flagellar motor protein PomB [Vibrio cholerae MAK 757] gi|9655348|gb|AAF94055.1| chemotaxis protein PomB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|51241597|emb|CAH17908.1| flagellar motor protein PomB [Vibrio cholerae] gi|121547616|gb|EAX57715.1| chemotaxis protein PomB [Vibrio cholerae 2740-80] gi|121629381|gb|EAX61811.1| chemotaxis protein PomB [Vibrio cholerae V52] gi|124114525|gb|EAY33345.1| flagellar motor protein [Vibrio cholerae 1587] gi|124122179|gb|EAY40922.1| chemotaxis protein PomB [Vibrio cholerae MZO-3] gi|126512246|gb|EAZ74840.1| chemotaxis protein PomB [Vibrio cholerae NCTC 8457] gi|126518793|gb|EAZ76016.1| chemotaxis protein PomB [Vibrio cholerae B33] gi|146316217|gb|ABQ20756.1| chemotaxis protein PomB [Vibrio cholerae O395] gi|148873956|gb|EDL72091.1| chemotaxis protein PomB [Vibrio cholerae 623-39] gi|149739087|gb|EDM53383.1| chemotaxis protein PomB [Vibrio cholerae MZO-2] gi|150424428|gb|EDN16365.1| chemotaxis protein PomB [Vibrio cholerae AM-19226] gi|227008957|gb|ACP05169.1| chemotaxis protein PomB [Vibrio cholerae M66-2] gi|227012713|gb|ACP08923.1| chemotaxis protein PomB [Vibrio cholerae O395] gi|229333779|gb|EEN99265.1| Flagellar motor rotation protein MotB [Vibrio cholerae 12129(1)] gi|229339089|gb|EEO04106.1| Flagellar motor rotation protein MotB [Vibrio cholerae bv. albensis VL426] gi|229339673|gb|EEO04688.1| Flagellar motor rotation protein MotB [Vibrio cholerae TM 11079-80] gi|229344664|gb|EEO09638.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC9] gi|229349901|gb|EEO14855.1| Flagellar motor rotation protein MotB [Vibrio cholerae TMA 21] gi|229350793|gb|EEO15734.1| Flagellar motor rotation protein MotB [Vibrio cholerae B33] gi|229357725|gb|EEO22642.1| Flagellar motor rotation protein MotB [Vibrio cholerae BX 330286] gi|229371176|gb|ACQ61599.1| Flagellar motor rotation protein MotB [Vibrio cholerae MJ-1236] gi|254843733|gb|EET22147.1| flagellar motor protein PomB [Vibrio cholerae MO10] gi|262032637|gb|EEY51190.1| Flagellar motor rotation protein MotB [Vibrio cholerae CT 5369-93] gi|297534594|gb|EFH73431.1| chemotaxis protein PomB [Vibrio cholerae RC385] gi|297543318|gb|EFH79368.1| flagellar motor protein PomB [Vibrio cholerae MAK 757] Length = 318 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 120/332 (36%), Gaps = 47/332 (14%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 4 EQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRL 63 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + I ++ P R ID+ + + IT+ +++ + G +++ QR Sbjct: 64 EVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQ 123 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + +++ S + + ++ + S Sbjct: 124 LTGGQSAETSVQDNQNTQSEMQQQQAQAMSEQ---------------------------- 155 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ +A+ I LS + + E I I I R F + S+ P+ Sbjct: 156 -METVAESIKKALSREIEQGA---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRP 208 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++++I E++ + + GHTD + R NW LS RA S Q + K + Sbjct: 209 LVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKDFDHLR 268 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 ++ G A + +D NRR++I + Sbjct: 269 LQVRGLADTQPLGPNDTEAQRATNRRVEISIL 300 >gi|197285528|ref|YP_002151400.1| motility protein B [Proteus mirabilis HI4320] gi|227356023|ref|ZP_03840414.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906] gi|194683015|emb|CAR43481.1| chemotaxis protein (motility protein B) [Proteus mirabilis HI4320] gi|227163800|gb|EEI48708.1| flagellar motor protein MotB [Proteus mirabilis ATCC 29906] Length = 349 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 5/208 (2%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL--AMKRKKRLQDLAK 197 +E+ + L EKG+ T+ ++ Y + + + + K++ + L + Sbjct: 58 AEYFRTPLKVAIEKGRVSGDVTNPIPGGGRDPVYNEGDVLPKGVEDKQLNEKQQFRKLKE 117 Query: 198 KISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + L ++ +L + G+ I IID+ + PMF S+ P +L I Sbjct: 118 NLEQVILQDPRLKDLKPHLLIDMMDEGLRIQIIDKESRPMFKVGSATVEPYMKDILTAIA 177 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L S IS+ GHTD P+ + A NW LS DRA ++ + L+ +G++E ++ ++ G Sbjct: 178 PILNDSPYKISLSGHTDDIPYASGALKYSNWELSTDRANASRRELIGAGLAEWKVLRVVG 237 Query: 315 FAHHRLKIASDPMNSANRRIDILVEDRQ 342 A + D ANRRI ILV +Q Sbjct: 238 MASTVHLVKEDGFAPANRRISILVLTKQ 265 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 3/179 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N Q I +KK+ + G+WKI YADFMT +MAFFLVMW+++ + +Y Sbjct: 2 KSNSQIIRVKKRGKKQHNAQH-GAWKIAYADFMTAMMAFFLVMWLLSIASPQELTRVAEY 60 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K + + D NP ++ + D + V+ K + Q+ + + Sbjct: 61 FRTPLKVAIEKGRVSGDVTNPIPGGGRDPVYNEGD--VLPKGVEDKQLNEKQQFRKLKEN 118 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 L + + + + L ++G + + + K + + P K+ + A+ Sbjct: 119 LEQVILQDPRLKDLKPHLLIDMMDEGLRIQIIDKESRPMFKVGSATVEPYMKDILTAIA 177 >gi|238758125|ref|ZP_04619305.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236] gi|238703663|gb|EEP96200.1| hypothetical protein yaldo0001_12650 [Yersinia aldovae ATCC 35236] Length = 364 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 114/304 (37%), Gaps = 73/304 (24%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+++ + I +YF K +T+ D + + Sbjct: 1 MTAMMAFFLVMWLLSVSSPQQLTQIAEYFRTPLKVALTSGDKSSDSTSVIPGGGDDP--- 57 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 +++ ++ K Sbjct: 58 --------------------------------------------------TQQIGEVRKH 67 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 D E+S ++E Y L L ++ ++ RL+ L + L ++ + + + Sbjct: 68 IDSEES--RKEEYRLNKLREKLDQLIESDPRLKALRPHL---LINMMDEGLRIQI----- 117 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 ID +N PMF S+ P +L+ I +L IS+ GHTD P+ Sbjct: 118 --------IDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYATG 169 Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ + ++ ++ G A + NRRI ILV Sbjct: 170 ERGYSNWELSADRANASRRELLAGGLDDGKVLRVVGMASTMRLKEQTSDDPVNRRISILV 229 Query: 339 EDRQ 342 ++Q Sbjct: 230 LNKQ 233 >gi|213426377|ref|ZP_03359127.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 309 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELEKTVEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 1/181 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +L+ + R Sbjct: 61 EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELEKTVEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 K 187 Sbjct: 181 A 181 >gi|59711322|ref|YP_204098.1| flagellar motor protein MotB [Vibrio fischeri ES114] gi|197335182|ref|YP_002155478.1| flagellar motor protein [Vibrio fischeri MJ11] gi|59479423|gb|AAW85210.1| flagellar motor protein MotB1 [Vibrio fischeri ES114] gi|197316672|gb|ACH66119.1| flagellar motor protein [Vibrio fischeri MJ11] Length = 309 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 116/330 (35%), Gaps = 54/330 (16%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78 P W +AD T+LM FF+++ + D K I N + Sbjct: 9 CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNVLEVKDIP 68 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + ++ P R I++ + + I + ++D G +++ +R + Sbjct: 69 KGTSVIAQEFRPGRPEPTPIEVIMQQTIDIPQKTLDFHDGESDRAGGTKREAGKQTGGES 128 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S +SE + + Q+L Sbjct: 129 PSNSTQTSAQSNSESES----------------------------------QTQSQQELE 154 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 I L +++ ++ E ++I I R F S+ P+ ++++I Sbjct: 155 DTIKKALEREISEGAIE---VENLGQQLVIRI---REKGAFPAGSAFLQPKFRPLIRQIA 208 Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314 E++ +I + GHTD P + R NW LS RA S + + G DR+ ++ G Sbjct: 209 ELVKDVPGIIRVSGHTDNQPLDSELYRSNWDLSAQRAVSVALEMERVKGFESDRL-RVRG 267 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQ 342 A +++ + NRR++I + + Sbjct: 268 MASTEPLVSNKTAEGRARNRRVEISIMQGK 297 >gi|261340281|ref|ZP_05968139.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316] gi|288317370|gb|EFC56308.1| chemotaxis MotB protein [Enterobacter cancerogenus ATCC 35316] Length = 309 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 7/213 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q +E+ + L G+ + S + + KE + +K+ Q K Sbjct: 58 QIAEYFRTPLATAVTGGQRISNSDSPIPGGGDDYTQQKGEVKKEPNIDELKKRMEQARLK 117 Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 K+ L L+ + + + + + G+ I IID +N PMF S+ P +L Sbjct: 118 KVRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL +S+ GHTD P+ N NW LS DRA ++ + L+ G+ + ++ Sbjct: 178 RAIAPVLNGIPNRVSLSGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDDGKVL 237 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A P ++ NRRI +LV ++Q Sbjct: 238 RVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 1/181 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSHP-IVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T + I + +P + + N +LK + + R Sbjct: 61 EYFRTPLATAVTGGQRISNSDSPIPGGGDDYTQQKGEVKKEPNIDELKKRMEQARLKKVR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + ++ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 K 187 Sbjct: 181 A 181 >gi|295095518|emb|CBK84608.1| Flagellar motor protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 309 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL+ L + + ++ + + + G+ I Sbjct: 92 TQQQGEVKKQPNIDELKKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N Sbjct: 152 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYATGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVAGGLDDGKVLRVVGMAATMRLTDRGPDDAINRRISLLVLNQQA 270 >gi|260773298|ref|ZP_05882214.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP 69.14] gi|260612437|gb|EEX37640.1| Flagellar motor rotation protein MotB [Vibrio metschnikovii CIP 69.14] Length = 314 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 46/333 (13%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 P L ++ +AD M +LM FF+++ + D K I N Sbjct: 5 KRKCPPPGLPAYMGTFADLMALLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEV 64 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + + ++ P R ID+ + + IT+ +++ G +++ QR + + Sbjct: 65 KDIPKGTSVIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGDSDRAGGNQRDDGQLT 124 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S T DS+ +D + + +++++E L Sbjct: 125 GGESPETS-------TEDSQDNEDAEQEQEQSEALSEEMEIV-----------------L 160 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +++ K + + V E ILI I R F + S+ P+ ++ Sbjct: 161 ENIKKALDREIEQ-------GAVEVENLGQQILIRI---RERGAFPEGSAFLQPQFRPLV 210 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 ++I E++ ++ + GHTD + R NW LS RA S Q + + + R + Sbjct: 211 RQIAELVKDVPGIVQVTGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMERVTGFDHRRLE 270 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G A +D S NRR++I + + Sbjct: 271 VRGLADTAPVGPNDTEAQRSRNRRVEIGIMQGK 303 >gi|224824155|ref|ZP_03697263.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224603574|gb|EEG09749.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 302 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 4/208 (1%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKK 198 +E+ + L G+ +T + K + + + + ++++K RL L KK Sbjct: 59 AEYFRTPLKVALAGGQGSGDATSMIKGGGTDLTRQAGQVKRAREEEIQQEKTRLAKLQKK 118 Query: 199 ISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I S + V + E T G+ I I+D++N PMFD S+ LP T +LQ++G+ Sbjct: 119 IESNIEQSAVLKAYKNQLQLEMTPEGLRIQIVDEQNRPMFDSGSANLLPHTRTILQELGK 178 Query: 258 VLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L +SI GHTDA PF NW LS DRA +A + L+ G+ D+I ++ G Sbjct: 179 ELNGVANRLSISGHTDAKPFGGAQHGYSNWELSADRANAARRELLAGGLMHDKILRVVGL 238 Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQG 343 A I S+ + NRRI I+V +++ Sbjct: 239 AAANPLIRSNVFSPENRRIAIVVLNKEA 266 >gi|209694505|ref|YP_002262433.1| flagellar motor protein MotB [Aliivibrio salmonicida LFI1238] gi|208008456|emb|CAQ78622.1| sodium-driven polar flagellar protein MotB [Aliivibrio salmonicida LFI1238] Length = 309 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 124/330 (37%), Gaps = 54/330 (16%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78 P W ++AD T+LM FF+++ + D K I N + Sbjct: 9 CPPGSPIWMAIFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNVLEVKDIP 68 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + ++ P R I++ + + I + ++D G +++ +R N+ + Sbjct: 69 KGTSVIAQEFRPGRPEPTPIEVIMQQTIDIPQKTLDFHDGESDRAGGSKREAGNLTGGES 128 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S S ++ + + + Q+L Sbjct: 129 SSTSTQTN----------------------------------AQSDAESQSQNQSQQELE 154 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + I L +A+ V+ E ++I I R F S+ P+ ++++IG Sbjct: 155 ETIKKALEREIAEGAVE---VENLGQQLVIRI---REKGAFPAGSAFLQPKFRPLIRQIG 208 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISG 314 E++ +I + GHTD P + + R NW LS RA S +++L G + DR+ ++ G Sbjct: 209 ELVKDVPGIIRVSGHTDNQPLESELYRSNWDLSAQRAVSVGHEMLRVKGFNSDRL-RVRG 267 Query: 315 FAHHRL--KIASDPMNSANRRIDILVEDRQ 342 A + + NRR++I + + Sbjct: 268 MASTEPLGPNKTAAQRARNRRVEISIMQGK 297 >gi|16760871|ref|NP_456488.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141437|ref|NP_804779.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163277|ref|ZP_03348987.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213622329|ref|ZP_03375112.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|25298889|pir||AF0746 motility protein B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503168|emb|CAD05673.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhi] gi|29137064|gb|AAO68628.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 309 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 K 187 Sbjct: 181 A 181 >gi|331663388|ref|ZP_08364298.1| chemotaxis protein MotB [Escherichia coli TA143] gi|331059187|gb|EGI31164.1| chemotaxis protein MotB [Escherichia coli TA143] Length = 366 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 149 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 208 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 209 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 268 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 269 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 327 >gi|307611161|emb|CBX00805.1| hypothetical protein LPW_25091 [Legionella pneumophila 130b] Length = 253 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 63/302 (20%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 +MAFFL+MW++ + + K I +YF K + + + + + + N D Sbjct: 1 MMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVALFGGESMGNRKATIKGGGPNIED---- 56 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 ++ Q S K + K K++ +S Sbjct: 57 -------------------------------TDGQVSATNKPLINESIAKDKEIIESQAN 85 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRT 222 E K+L++L +I+ ++ + + K +L + Sbjct: 86 EI------------------------KKLEELKSEINLSMEKDPSLAGLKKQLLMDVVSD 121 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 G+ I +ID + PMFD S PE +L I ++L I+I+GHTDA+P+ N Sbjct: 122 GLRIQLIDNQKKPMFDVGSDKINPEIEPILANIAKLLNSVPNKITIQGHTDANPYHNPEE 181 Query: 282 --RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 NW LS RA +A + L+K+G+ E+++ ++G++ L +P N NRRI I+V Sbjct: 182 LEYTNWELSAQRANAARRALIKAGMDENKVMTVTGYSSTVLLDKKNPYNPENRRISIIVM 241 Query: 340 DR 341 + Sbjct: 242 KK 243 >gi|157145319|ref|YP_001452639.1| flagellar motor protein MotB [Citrobacter koseri ATCC BAA-895] gi|157082524|gb|ABV12202.1| hypothetical protein CKO_01059 [Citrobacter koseri ATCC BAA-895] Length = 308 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 3/193 (1%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 + +++ + +++ + RL L + + ++ Sbjct: 77 ANSESPIPGGGEDYTQQQGEVNKQPNIDELKKRMEQSRLSKLRGDLDQLIESDPKLRALR 136 Query: 214 -GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHT Sbjct: 137 PHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRGIAPVLNGIPNRISLSGHT 196 Query: 273 DASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 D P+ + NW LS DRA ++ + L+ G+ + ++ ++ G A P ++ Sbjct: 197 DDFPYASGERGYSNWELSADRANASRRELVVGGLDDGKVLRVVGMAATMRLSDRGPDDAI 256 Query: 331 NRRIDILVEDRQG 343 NRRI +LV ++Q Sbjct: 257 NRRISLLVLNKQA 269 >gi|16765264|ref|NP_460879.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413159|ref|YP_150234.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180499|ref|YP_216916.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613518|ref|YP_001587483.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552438|ref|ZP_02346191.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994228|ref|ZP_02575320.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168238556|ref|ZP_02663614.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241555|ref|ZP_02666487.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259799|ref|ZP_02681772.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462543|ref|ZP_02696474.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820750|ref|ZP_02832750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444100|ref|YP_002041189.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450845|ref|YP_002045977.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472145|ref|ZP_03078129.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737421|ref|YP_002114959.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248088|ref|YP_002146098.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264977|ref|ZP_03165051.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362085|ref|YP_002141722.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243979|ref|YP_002215160.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390054|ref|ZP_03216665.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931026|ref|ZP_03221852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352375|ref|YP_002226176.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856557|ref|YP_002243208.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583574|ref|YP_002637372.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912501|ref|ZP_04656338.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2494511|sp|P55892|MOTB_SALTY RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|1764128|gb|AAC45266.1| MotB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420459|gb|AAL20838.1| enables flagellar motor rotation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127416|gb|AAV76922.1| motility protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128132|gb|AAX65835.1| enables flagellar motor rotation, linking torque machinery to cell wall [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362882|gb|ABX66650.1| hypothetical protein SPAB_01238 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402763|gb|ACF62985.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409149|gb|ACF69368.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458509|gb|EDX47348.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712923|gb|ACF92144.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634203|gb|EDX52555.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093562|emb|CAR59024.1| motility protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211791|gb|ACH49188.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243232|gb|EDY25852.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288646|gb|EDY28021.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938495|gb|ACH75828.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602499|gb|EDZ01045.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320070|gb|EDZ05275.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272156|emb|CAR37011.1| motility protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322895|gb|EDZ10734.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327891|gb|EDZ14655.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339183|gb|EDZ25947.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342679|gb|EDZ29443.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350979|gb|EDZ37610.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708360|emb|CAR32664.1| motility protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468101|gb|ACN45931.1| flagellar motor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247092|emb|CBG24913.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993909|gb|ACY88794.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158442|emb|CBW17951.1| motility protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912916|dbj|BAJ36890.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085458|emb|CBY95239.1| Chemotaxis protein motB Motility protein B [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224566|gb|EFX49629.1| Flagellar motor rotation protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616922|gb|EFY13830.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618161|gb|EFY15053.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625831|gb|EFY22650.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626283|gb|EFY23093.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632697|gb|EFY29442.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639041|gb|EFY35734.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640481|gb|EFY37134.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646010|gb|EFY42527.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655476|gb|EFY51784.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660255|gb|EFY56493.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322668121|gb|EFY64280.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674119|gb|EFY70213.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675527|gb|EFY71601.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683059|gb|EFY79075.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686753|gb|EFY82731.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714975|gb|EFZ06546.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130206|gb|ADX17636.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195356|gb|EFZ80536.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199248|gb|EFZ84343.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204163|gb|EFZ89175.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323211878|gb|EFZ96707.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217488|gb|EGA02207.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221977|gb|EGA06366.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231510|gb|EGA15623.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235952|gb|EGA20031.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240522|gb|EGA24565.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245414|gb|EGA29414.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250185|gb|EGA34077.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253633|gb|EGA37461.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258567|gb|EGA42233.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259386|gb|EGA43023.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266189|gb|EGA49679.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|326622909|gb|EGE29254.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627426|gb|EGE33769.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988815|gb|AEF07798.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 309 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 K 187 Sbjct: 181 A 181 >gi|296101766|ref|YP_003611912.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056225|gb|ADF60963.1| flagellar motor protein MotB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 309 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 7/213 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q +E+ + L G + S + + KE + ++K Q K Sbjct: 58 QIAEYFRTPLATAVSGGPRISNSDSPIPGGGDDYTQKQGEVKKEPNIDELKRKMEQARLK 117 Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 K+ L L+ + + + + + G+ I IID +N PMF S+ P +L Sbjct: 118 KLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL IS+ GHTD P+ NW LS DRA ++ + L+ G+ + ++ Sbjct: 178 RAIAPVLNGIPNRISLSGHTDDFPYATGEKGYSNWELSADRANASRRELVAGGLDDGKVL 237 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A P ++ NRRI +LV ++Q Sbjct: 238 RVVGMAATMRVSDRGPDDAINRRISLLVLNQQA 270 >gi|120599624|ref|YP_964198.1| flagellar motor protein MotB [Shewanella sp. W3-18-1] gi|146292382|ref|YP_001182806.1| flagellar motor protein MotB [Shewanella putrefaciens CN-32] gi|120559717|gb|ABM25644.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] gi|145564072|gb|ABP75007.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] gi|319425682|gb|ADV53756.1| stator-force generator of Na+ coupled flagellar motor, PomB [Shewanella putrefaciens 200] Length = 308 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 116/336 (34%), Gaps = 54/336 (16%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73 P W +AD M++LM FF+++ + D K I N Sbjct: 2 AKCKCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKVE 61 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + + + P R I++ + +T+ +D + G + Q+ Sbjct: 62 VKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDFQAGEDDSAGGVQQQRG-- 119 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 E+ + + K A + + Sbjct: 120 --------------------------------EQRGGEASSTAQETAEAVKADAAAAQDK 147 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + KK++ L+ + D ++ E+ I+I I R F S P V Sbjct: 148 INQQVKKMAQELNKEIIDGAIE---IESLGQQIIIRI---REKGSFASGSGFLQPRFKPV 201 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRI 309 ++ +GE+L VI++ G+TD + NW LS RA + L++ G R+ Sbjct: 202 VRSVGELLKDVPGVITVAGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM 261 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 K+ G A + + +D + NRR++I +E + Sbjct: 262 -KVVGMASNNPIVPNDSPENRARNRRVEIAIEQGKA 296 >gi|161502956|ref|YP_001570068.1| flagellar motor protein MotB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864303|gb|ABX20926.1| hypothetical protein SARI_01018 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 309 Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 1/181 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + + Sbjct: 2 KNQAHP-IVVVKRRKHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQLA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 K 187 Sbjct: 181 A 181 >gi|113971062|ref|YP_734855.1| flagellar motor protein MotB [Shewanella sp. MR-4] gi|114048292|ref|YP_738842.1| flagellar motor protein MotB [Shewanella sp. MR-7] gi|117921338|ref|YP_870530.1| flagellar motor protein MotB [Shewanella sp. ANA-3] gi|113885746|gb|ABI39798.1| OmpA/MotB domain protein [Shewanella sp. MR-4] gi|113889734|gb|ABI43785.1| OmpA/MotB domain protein [Shewanella sp. MR-7] gi|117613670|gb|ABK49124.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 306 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 54/336 (16%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73 + P W +AD M++LM FF+++ + D K I N Sbjct: 2 AKCNCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSMKYAFGVQNKVE 61 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + + + P R I++ + +T+ +D + G + Q+ + Sbjct: 62 VKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDYQAGEDDSAGGVQQQNGSQ 121 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S ++ +++ ++ +D + Sbjct: 122 RGGEASATAQETADAVKAEAAAAQD----------------------------------K 147 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + KK++ L+ + D + E+ I+I I R F S P V Sbjct: 148 INQQVKKMAQELNNEITDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPRFKPV 201 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRI 309 ++ +GE+L +I++ G+TD + NW LS RA + VL++ G R+ Sbjct: 202 VRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRM 261 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 K+ G A + + +D + NRR++I +E + Sbjct: 262 -KVVGMASNNPIVPNDSPENRARNRRVEIAIEQGKA 296 >gi|332307428|ref|YP_004435279.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174757|gb|AEE24011.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 305 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 39/325 (12%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 PKCPPAGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F QN E K I D T Q++ + + + + + ++ S Sbjct: 55 AFGVQNKIEVKDIPKGTSVIAMEFRPGRPDPTPIETIQQQTIEMTQQMLEFQAGNEDSAG 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + E+ + T E+S + K +++AK++ Sbjct: 115 GRQ--KQRGEQKGGAAQQTASEQS------------------SAKTTASQEEVAKQMKKV 154 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + + + E+ ++I I R F S+ P+ +L+KIG +LA Sbjct: 155 AQQLEKEILDGAIEMESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTLLADM 211 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320 I I GH+D+ N + R NW LS RA + + L K+ G E R+ + G A Sbjct: 212 PGDIEISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRM-AVIGKADTAP 270 Query: 321 KIASDP--MNSANRRIDILVEDRQG 343 + D S NRR++I V+ + Sbjct: 271 LLGEDDAQARSRNRRVEIAVKQGKA 295 >gi|238795648|ref|ZP_04639162.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC 43969] gi|238720374|gb|EEQ12176.1| hypothetical protein ymoll0001_14990 [Yersinia mollaretii ATCC 43969] Length = 385 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 73/304 (24%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+++ + I YF K +T+ +P + Sbjct: 1 MTAMMAFFLVMWLLSVSSPQELTQIADYFRTPLKVALTSGDKSSSSTSPIPGGGDDP--- 57 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 +++ ++ K Sbjct: 58 --------------------------------------------------TQQVGEVRKH 67 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 D E+S + E Y L L ++ ++ RL+ L + + + + +G+ + Sbjct: 68 IDSEES--RREEYRLNKLREKLDQLIESDPRLRALRPHL-------LINMMEEGLRIQ-- 116 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N Sbjct: 117 -------IIDSQNRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANG 169 Query: 281 A--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 NW LS DRA ++ + L+ G+ E ++ ++ G A + NRRI ILV Sbjct: 170 ERGYSNWELSADRANASRRELLIGGLDEGKVLRVVGMASTMRLKEQASDDPVNRRISILV 229 Query: 339 EDRQ 342 ++Q Sbjct: 230 LNKQ 233 >gi|238756396|ref|ZP_04617706.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473] gi|238705369|gb|EEP97776.1| hypothetical protein yruck0001_10350 [Yersinia ruckeri ATCC 29473] Length = 354 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 3/180 (1%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + + K + RL L +K+ + ++ +L G+ Sbjct: 54 GDDPTQQQGEVRKQSQSAETKKEQARLNKLREKLEELIESDPRLKALRPHLLINMMDEGL 113 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282 I IID +N PMF S+ P +L+ I +L IS+ GHTD P+ N Sbjct: 114 RIQIIDSQNRPMFQMGSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGERGY 173 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS DRA ++ + L+ G++E ++ ++ G A + NRRI ILV ++Q Sbjct: 174 SNWELSADRANASRRELLSGGLAEGKVLRVVGMASTMRLKEQGADDPVNRRISILVLNKQ 233 >gi|262362261|gb|ACY58982.1| chemotaxis MotB protein [Yersinia pestis D106004] Length = 276 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV +++ Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKR 267 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|238563173|ref|ZP_04610426.1| flagellar motor protein [Burkholderia mallei GB8 horse 4] gi|251767164|ref|ZP_04819981.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20] gi|238521179|gb|EEP84632.1| flagellar motor protein [Burkholderia mallei GB8 horse 4] gi|243063600|gb|EES45786.1| putative chemotaxis MotB protein [Burkholderia mallei PRL-20] Length = 260 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLV 207 R S + + ++ + L + + RL DL K+ + + Sbjct: 13 RASMPARPAAPTARRTWPSASRKSEDDALAQAQGSLERREQVRLHDLQVKLMAAIEANPT 72 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 + + ++T G+ I I+D + PMF SS P +L++IG+ L I Sbjct: 73 LRQFKQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDILREIGKTLNDVPNRII 132 Query: 268 IRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 ++GHTDA P+ NW LS DRA ++ + L+ G+ E ++ ++ G A + +D Sbjct: 133 VQGHTDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRVLGLASTQNLNKAD 192 Query: 326 PMNSANRRIDILVEDRQ 342 P++ NRRI I+V +R+ Sbjct: 193 PLDPENRRISIIVLNRK 209 >gi|126173599|ref|YP_001049748.1| flagellar motor protein MotB [Shewanella baltica OS155] gi|152999879|ref|YP_001365560.1| flagellar motor protein MotB [Shewanella baltica OS185] gi|160874504|ref|YP_001553820.1| flagellar motor protein MotB [Shewanella baltica OS195] gi|217974157|ref|YP_002358908.1| flagellar motor protein MotB [Shewanella baltica OS223] gi|304409470|ref|ZP_07391090.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307303828|ref|ZP_07583581.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|125996804|gb|ABN60879.1| OmpA/MotB domain protein [Shewanella baltica OS155] gi|151364497|gb|ABS07497.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|160860026|gb|ABX48560.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|217499292|gb|ACK47485.1| OmpA/MotB domain protein [Shewanella baltica OS223] gi|304351988|gb|EFM16386.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306912726|gb|EFN43149.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|315266742|gb|ADT93595.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 310 Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 115/328 (35%), Gaps = 36/328 (10%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P W +AD M++LM FF+++ + D K I Sbjct: 3 KAKCNCPPAGAPMWLATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSM---------- 52 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 K F QN E K I D ++ + E + Y + Sbjct: 53 -KYAFGVQNKVEVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDYQAGEDD 111 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S + G+ + ++ K A + ++ KK+ Sbjct: 112 SAGGVQQQSGSQRGGEATATAQEV--------------ADAVKAEAAAAQDKINQEVKKM 157 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + D + E+ I+I I R F S P V++ +GE+L Sbjct: 158 AQELNKEITDGA---IEIESLGQQIIIRI---REKGAFASGSGFLQPRFKPVVRSVGELL 211 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 +I++ G+TD + NW LS RA + L++ G R+ K+ G A Sbjct: 212 KDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVAHELVQVKGFDSKRM-KVVGMAS 270 Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343 + + +D + NRR++I +E + Sbjct: 271 NNPIVPNDSPENRARNRRVEIAIEQGKA 298 >gi|24373103|ref|NP_717146.1| flagellar motor protein MotB [Shewanella oneidensis MR-1] gi|24347292|gb|AAN54590.1|AE015599_2 sodium-driven polar flagellar protein PomB [Shewanella oneidensis MR-1] Length = 308 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 63/336 (18%), Positives = 124/336 (36%), Gaps = 54/336 (16%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73 + P W +AD M++LM FF+++ + D K I N Sbjct: 2 AKCNCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVMKYKQIAGSMKYAFGVQNKVE 61 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + + + P R I++ + +T+ +DL+ G + Q+ + Sbjct: 62 VKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGEDDSSGGTQQQNGSQ 121 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S ++ ++++ ++ +D + Sbjct: 122 RGGEASATAQETEDAVKAEAAAAQD----------------------------------K 147 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + KK++ L+ +AD + E+ I+I I R F S P V Sbjct: 148 INQQVKKMAQELNQEIADGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPRFKPV 201 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRI 309 ++ +GE+L +I++ G+TD + NW LS RA + VL++ G R+ Sbjct: 202 VRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQVKGFDPKRM 261 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 K+ G A + + +D + NRR++I +E + Sbjct: 262 -KVVGMASNNPIVPNDSPDNRARNRRVEIAIEQGKA 296 >gi|213647163|ref|ZP_03377216.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 275 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 58 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 117 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 118 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 177 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 178 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 236 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 55/147 (37%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+I+ + I +YF +T I + ++P + Sbjct: 1 MTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQ 60 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 + N +LK + R + + S+ + + ++G + Sbjct: 61 QGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQII 120 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMK 187 + + K + + P ++ + A+ Sbjct: 121 DSQNRPMFKTGSAEVEPYMRDILRAIA 147 >gi|126730120|ref|ZP_01745932.1| putative chemotaxis MotB protein [Sagittula stellata E-37] gi|126709500|gb|EBA08554.1| putative chemotaxis MotB protein [Sagittula stellata E-37] Length = 279 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 125/327 (38%), Gaps = 58/327 (17%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 IIIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K I YF Sbjct: 9 PIIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRKGIADYF-TPT 67 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + S G ++N + + N Sbjct: 68 IAMARVSGGGDGPLGGDSVFAENTLPRMGSGSTSLNPA---------------------- 105 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 N +G + D++++ + E + Sbjct: 106 ---------ASNGEQGTFTEGDTGDDAADMDEAFKEVEEMLMGRGG-------------- 142 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +VAD +++ ++ T G++I + + +F + P P + Sbjct: 143 ----------ESMVADELMEHIVTRVTDEGLVIEFFESEHARLF-TGDATPTPLLEDLAL 191 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + T ++I GH +SP +W +S RA + ++L GV E+R+ +++ Sbjct: 192 VLARASEVVTNQMAIEGHVASSPLVLARDPSWDVSGLRASAFRELLTGEGVPENRVKRVT 251 Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340 +A +PMN+ N RI+++ Sbjct: 252 SYADREP-AHKNPMNARNNRIEVVFLR 277 >gi|300904777|ref|ZP_07122605.1| chemotaxis protein MotB [Escherichia coli MS 84-1] gi|301305233|ref|ZP_07211330.1| chemotaxis protein MotB [Escherichia coli MS 124-1] gi|300403291|gb|EFJ86829.1| chemotaxis protein MotB [Escherichia coli MS 84-1] gi|300839439|gb|EFK67199.1| chemotaxis protein MotB [Escherichia coli MS 124-1] gi|315257277|gb|EFU37245.1| chemotaxis protein MotB [Escherichia coli MS 85-1] Length = 308 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMCLSDRGPDDAVNRRISLLVLNKQA 269 >gi|121600109|ref|YP_994715.1| flagellar motor protein [Burkholderia mallei SAVP1] gi|124386114|ref|YP_001027662.1| putative chemotaxis MotB protein [Burkholderia mallei NCTC 10229] gi|121228919|gb|ABM51437.1| flagellar motor protein [Burkholderia mallei SAVP1] Length = 245 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 3/193 (1%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNI 211 + + ++ + L + + RL DL K+ + + Sbjct: 2 PARPAAPTARRTWPSASRKSEDDALAQAQGSLERREQVRLHDLQVKLMAAIEANPTLRQF 61 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + + ++T G+ I I+D + PMF SS P +L++IG+ L I ++GH Sbjct: 62 KQQIRIDSTLMGLRIEIVDTQKRPMFAMSSDAVEPYMRDILREIGKTLNDVPNRIIVQGH 121 Query: 272 TDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 TDA P+ NW LS DRA ++ + L+ G+ E ++ ++ G A + +DP++ Sbjct: 122 TDAVPYAGGEKGYSNWELSADRANASRRELIAGGMDEAKVLRVLGLASTQNLNKADPLDP 181 Query: 330 ANRRIDILVEDRQ 342 NRRI I+V +R+ Sbjct: 182 ENRRISIIVLNRK 194 >gi|209767218|gb|ACI81921.1| chemotaxis protein MotB [Escherichia coli] gi|320647103|gb|EFX15936.1| flagellar motor protein MotB [Escherichia coli O157:H- str. 493-89] gi|320652386|gb|EFX20684.1| flagellar motor protein MotB [Escherichia coli O157:H- str. H 2687] Length = 308 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|308048595|ref|YP_003912161.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307630785|gb|ADN75087.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 314 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 122/330 (36%), Gaps = 49/330 (14%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTA 79 +W +AD T+LM FF+++ + D K I N + Sbjct: 11 AAGAPAWMATFADLATLLMCFFVLLLAFSEMDVLKFKQIAGSMKYAFGVQNKVEVKDIPR 70 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + ++ P R I++ + + T++ ++ + G ++Q Q N ++S Sbjct: 71 GTSVIAQEFRPGRPDPTPIEVIQQQTVEFTRDMLNYQPGESDQAGGQQNQSGNSRGGTSS 130 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q + + + S+ + + +L K Sbjct: 131 QTANQPRAEQSNQSQT-----------------------------RTSASDADNVNELTK 161 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI+ L + D ++ E+ I+I I R F S+ P V+ +G Sbjct: 162 KIAQQLEDQILDGAIE---VESLGQQIIIRI---REKGAFPAGSAFLQPRFRPVIHAVGN 215 Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGF 315 +L +IS+ GHTD + N + R NW LS RA S L+K G R+ + G Sbjct: 216 LLKDVPGIISVTGHTDNTTIDNELYRSNWELSTQRAVSVAHELVKVEGFDPGRME-LRGV 274 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343 A + +++D NRR++I + + Sbjct: 275 AENEPLVSNDTWEGRVRNRRVEITINQGKA 304 >gi|170769416|ref|ZP_02903869.1| chemotaxis protein MotB [Escherichia albertii TW07627] gi|170121740|gb|EDS90671.1| chemotaxis protein MotB [Escherichia albertii TW07627] Length = 308 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 3/166 (1%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239 E++ + RL+ L + + ++ + + + G+ I IID +N PMF Sbjct: 104 EELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLLQEGLRIQIIDSQNRPMFKI 163 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S+ P +L+ I VL IS+ GHTD P+ N NW LS +RA ++ + Sbjct: 164 GSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYANGEKGYSNWELSTERANASRR 223 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L G+ + ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 224 ELAAGGLDDGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 269 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 72/179 (40%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + II+ K+ GSWKI YADFMT +MAFFLVMW+I+ + I +Y Sbjct: 2 KNQTHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F +T I + ++P + + + N +LK + + R + Sbjct: 62 FRTPLATAVTGGNRISNSESPIPGGGDDYTQRRGEVNKQPNIEELKKRMEQSRLRKLRGD 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 122 LDQLIESDPKLRALRPHLKIDLLQEGLRIQIIDSQNRPMFKIGSADVEPYMRDILRAIA 180 >gi|293415204|ref|ZP_06657847.1| chemotaxis protein MotB [Escherichia coli B185] gi|291432852|gb|EFF05831.1| chemotaxis protein MotB [Escherichia coli B185] Length = 308 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|109897648|ref|YP_660903.1| flagellar motor protein MotB [Pseudoalteromonas atlantica T6c] gi|109699929|gb|ABG39849.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 305 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 123/325 (37%), Gaps = 39/325 (12%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 PKCPPAGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F QN E K I D T Q++ + + + + + ++ S Sbjct: 55 AFGVQNKIEVKDIPKGTSVIAMEFRPGRPDPTPIETIQQQTIEMTQQMLEFQAGNEDSAG 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + K +K ++ +K + K+++ +A+++ Sbjct: 115 GRQ-------------KQRGEQKGGAAQQTASEQSSAKTTASQEEANKQMKKVAQQLEKE 161 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + + E+ ++I I R F S+ P+ +L+KIG +LA Sbjct: 162 I-------LDGAIEMESLGQQLIIRI---RENGSFSAGSAFLQPQFKPILRKIGTLLADM 211 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320 I I GH+D+ N + R NW LS RA + + L K+ G E R+ + G A Sbjct: 212 PGDIEISGHSDSLVISNELYRSNWDLSAQRAVAVAEELRKAPGFDEGRM-AVIGKADTAP 270 Query: 321 KIASDP--MNSANRRIDILVEDRQG 343 + D S NRR++I ++ + Sbjct: 271 LLGEDDAQARSRNRRVEIAIKQGKA 295 >gi|209919315|ref|YP_002293399.1| flagellar motor protein MotB [Escherichia coli SE11] gi|218554477|ref|YP_002387390.1| flagellar motor protein MotB [Escherichia coli IAI1] gi|209912574|dbj|BAG77648.1| chemotaxis protein MotB [Escherichia coli SE11] gi|218361245|emb|CAQ98829.1| protein that enables flagellar motor rotation [Escherichia coli IAI1] gi|324017971|gb|EGB87190.1| chemotaxis protein MotB [Escherichia coli MS 117-3] Length = 308 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|311695399|gb|ADP98272.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 246 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 7/187 (3%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVL 216 S D+E S + E+ + LS+ ++R+Q+L +++ + +L Sbjct: 12 EASPDIESSQIQIEDEVVDELSETL-----EQRRMQELFQELKEQIKQDETLQEFKDQLL 66 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + T G+ I I+D+ PMFD + + +L ++ + L +SI GHTD++P Sbjct: 67 IDITDEGLRIQIVDRSGRPMFDSGRAELKYYSQDILFELAKTLGSVNNKLSITGHTDSTP 126 Query: 277 FRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 F NW LS DRA +A + L+ GV + +I+++ G + L DP NRRI Sbjct: 127 FSGRPGYTNWELSADRANTARRALVAGGVRQQQIARVVGLSDSVLFDKEDPNAPVNRRIS 186 Query: 336 ILVEDRQ 342 I+V +++ Sbjct: 187 IIVLNKK 193 >gi|320178162|gb|EFW53139.1| Flagellar motor rotation protein MotB [Shigella boydii ATCC 9905] Length = 308 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L I + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDIDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|162420339|ref|YP_001607210.1| flagellar motor protein MotB [Yersinia pestis Angola] gi|162353154|gb|ABX87102.1| chemotaxis MotB protein [Yersinia pestis Angola] Length = 421 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|153950639|ref|YP_001400614.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 31758] gi|152962134|gb|ABS49595.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 31758] Length = 433 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|260868487|ref|YP_003234889.1| MotB protein [Escherichia coli O111:H- str. 11128] gi|257764843|dbj|BAI36338.1| MotB protein [Escherichia coli O111:H- str. 11128] gi|323180688|gb|EFZ66233.1| chemotaxis protein motB [Escherichia coli 1180] Length = 308 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|22125717|ref|NP_669140.1| flagellar motor protein MotB [Yersinia pestis KIM 10] gi|108807851|ref|YP_651767.1| flagellar motor protein MotB [Yersinia pestis Antiqua] gi|108812127|ref|YP_647894.1| flagellar motor protein MotB [Yersinia pestis Nepal516] gi|149366375|ref|ZP_01888409.1| chemotaxis MotB protein [Yersinia pestis CA88-4125] gi|165925475|ref|ZP_02221307.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938485|ref|ZP_02227042.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008640|ref|ZP_02229538.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210582|ref|ZP_02236617.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401678|ref|ZP_02307169.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422628|ref|ZP_02314381.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426350|ref|ZP_02318103.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928797|ref|YP_002346672.1| flagellar motor protein MotB [Yersinia pestis CO92] gi|229841656|ref|ZP_04461814.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843773|ref|ZP_04463916.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894516|ref|ZP_04509698.1| chemotaxis MotB protein [Yersinia pestis Pestoides A] gi|229902447|ref|ZP_04517566.1| chemotaxis MotB protein [Yersinia pestis Nepal516] gi|270490373|ref|ZP_06207447.1| flagellar motor protein MotB [Yersinia pestis KIM D27] gi|294504144|ref|YP_003568206.1| flagellar motor protein [Yersinia pestis Z176003] gi|21958635|gb|AAM85391.1|AE013785_4 lateral flagellar motor protein [Yersinia pestis KIM 10] gi|108775775|gb|ABG18294.1| chemotaxis MotB protein [Yersinia pestis Nepal516] gi|108779764|gb|ABG13822.1| chemotaxis MotB protein [Yersinia pestis Antiqua] gi|115347408|emb|CAL20310.1| chemotaxis MotB protein [Yersinia pestis CO92] gi|149290749|gb|EDM40824.1| chemotaxis MotB protein [Yersinia pestis CA88-4125] gi|165913600|gb|EDR32220.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922584|gb|EDR39735.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165993022|gb|EDR45323.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207762|gb|EDR52242.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958475|gb|EDR55496.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048783|gb|EDR60191.1| chemotaxis MotB protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054705|gb|EDR64509.1| chemotaxis MotB protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680493|gb|EEO76590.1| chemotaxis MotB protein [Yersinia pestis Nepal516] gi|229689381|gb|EEO81444.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694119|gb|EEO84167.1| chemotaxis MotB protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703535|gb|EEO90552.1| chemotaxis MotB protein [Yersinia pestis Pestoides A] gi|262366194|gb|ACY62751.1| flagellar motor protein [Yersinia pestis D182038] gi|270338877|gb|EFA49654.1| flagellar motor protein MotB [Yersinia pestis KIM D27] gi|294354603|gb|ADE64944.1| flagellar motor protein [Yersinia pestis Z176003] Length = 427 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|51596729|ref|YP_070920.1| flagellar motor protein MotB [Yersinia pseudotuberculosis IP 32953] gi|186895791|ref|YP_001872903.1| flagellar motor protein MotB [Yersinia pseudotuberculosis PB1/+] gi|51590011|emb|CAH21644.1| chemotaxis MotB protein [Yersinia pseudotuberculosis IP 32953] gi|186698817|gb|ACC89446.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 439 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|56695114|ref|YP_165461.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3] gi|56676851|gb|AAV93517.1| chemotaxis protein MotB [Ruegeria pomeroyi DSS-3] Length = 285 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 111/309 (35%), Gaps = 58/309 (18%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFF++MW++NAT + +K + YF Sbjct: 34 AWKVAYADFVTAMMAFFMLMWLLNATTEKQRKGLADYF---------------------- 71 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 S I+ D ++ + + R Sbjct: 72 -SDSIPINPVSGGGDGSFGGDSMF---SENAMVTTGTGGVNRRRADADRSRGSTGVDRQG 127 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 +G+ L + LE ++ LV++ + Sbjct: 128 GEGEPLEEFKTLEAALQGRGG-------------------------------ESLVSEQL 156 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 K ++ T G+++ +I +P+F+ +S P + + + + I++ GH Sbjct: 157 RKHIVTRVTDEGLIVELISTDESPLFETNSDRPTQLMKELAKVVVRAADMVSNGIAVGGH 216 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 A P W LS RA + G+ E+RI +++G A +L +PM + N Sbjct: 217 IRAHPVVLARNPVWELSTARAERTRVLFEGLGMKEERIQRVTGHADRKLTDP-NPMAARN 275 Query: 332 RRIDILVED 340 RI+I+ Sbjct: 276 DRIEIIFLR 284 >gi|320177401|gb|EFW52402.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC 74-1112] Length = 308 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|24113274|ref|NP_707784.1| flagellar motor protein MotB [Shigella flexneri 2a str. 301] gi|30063341|ref|NP_837512.1| flagellar motor protein MotB [Shigella flexneri 2a str. 2457T] gi|110805869|ref|YP_689389.1| flagellar motor protein MotB [Shigella flexneri 5 str. 8401] gi|24052278|gb|AAN43491.1| chemotaxis protein MotB [Shigella flexneri 2a str. 301] gi|30041593|gb|AAP17321.1| chemotaxis protein MotB [Shigella flexneri 2a str. 2457T] gi|110615417|gb|ABF04084.1| flagellar motor protein [Shigella flexneri 5 str. 8401] gi|281601336|gb|ADA74320.1| Chemotaxis protein MotB [Shigella flexneri 2002017] gi|332757207|gb|EGJ87544.1| chemotaxis protein motB [Shigella flexneri 2747-71] gi|332757449|gb|EGJ87784.1| chemotaxis protein motB [Shigella flexneri K-671] gi|332766620|gb|EGJ96824.1| motB protein, enables flagellar motor rotation, linking torque machinery to cell wall [Shigella flexneri 2930-71] gi|333004150|gb|EGK23682.1| chemotaxis protein motB [Shigella flexneri K-272] gi|333017634|gb|EGK36946.1| chemotaxis protein motB [Shigella flexneri K-304] Length = 308 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|45441604|ref|NP_993143.1| flagellar motor protein MotB [Yersinia pestis biovar Microtus str. 91001] gi|145599064|ref|YP_001163140.1| flagellar motor protein MotB [Yersinia pestis Pestoides F] gi|45436465|gb|AAS62020.1| chemotaxis MotB protein [Yersinia pestis biovar Microtus str. 91001] gi|145210760|gb|ABP40167.1| chemotaxis MotB protein [Yersinia pestis Pestoides F] gi|320014810|gb|ADV98381.1| chemotaxis MotB protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 433 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|170741247|ref|YP_001769902.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168195521|gb|ACA17468.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 277 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 116/326 (35%), Gaps = 63/326 (19%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN 75 + ++ + W + +AD M +LM+FF+++ + D +A+ F + FG N Sbjct: 1 MARRKR--GGAHGGHGWFVTFADLMALLMSFFVMVCAYSTQDQRKLQAVAGSFRDAFGVN 58 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + GI ++ P + + + D T + +N + Sbjct: 59 KESRFNGIIEKDGLPSATRL--------RDLRPVTPDKASDRTTPPLPDEVFDNGVPQNG 110 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 SL ++ LQDL Sbjct: 111 FRDGFGLAMASL-----------------------------------------RQALQDL 129 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + K VL T G+ +S++DQ MF S+ P T VL+++ Sbjct: 130 PD----------IAELSKNVLIHETARGLDVSLVDQDGRSMFPDGSTRPNDRTRQVLERL 179 Query: 256 GEVLAHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + + I+I G+T A P W LS RA S ++L +GV ++R + +SG Sbjct: 180 APAIRRMSNKIAISGYTAATRPGLRAPAPPWELSAGRAISVREILASNGVPDERFTVVSG 239 Query: 315 FAHHRLKIASDPMNSANRRIDILVED 340 A +P +ANRR+ I + Sbjct: 240 KADTEPLFPDNPYIAANRRVTITLLR 265 >gi|331673414|ref|ZP_08374182.1| chemotaxis protein MotB [Escherichia coli TA280] gi|331069612|gb|EGI40999.1| chemotaxis protein MotB [Escherichia coli TA280] Length = 308 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|15802301|ref|NP_288326.1| flagellar motor protein MotB [Escherichia coli O157:H7 EDL933] gi|15831853|ref|NP_310626.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. Sakai] gi|16129841|ref|NP_416403.1| protein that enables flagellar motor rotation [Escherichia coli str. K-12 substr. MG1655] gi|89108729|ref|AP_002509.1| protein that enables flagellar motor rotation [Escherichia coli str. K-12 substr. W3110] gi|157158423|ref|YP_001463195.1| flagellar motor protein MotB [Escherichia coli E24377A] gi|157161361|ref|YP_001458679.1| flagellar motor protein MotB [Escherichia coli HS] gi|168757929|ref|ZP_02782936.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401] gi|168762313|ref|ZP_02787320.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501] gi|168770876|ref|ZP_02795883.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486] gi|168776560|ref|ZP_02801567.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196] gi|168783193|ref|ZP_02808200.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076] gi|168789758|ref|ZP_02814765.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869] gi|168801871|ref|ZP_02826878.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508] gi|170019766|ref|YP_001724720.1| flagellar motor protein MotB [Escherichia coli ATCC 8739] gi|170081544|ref|YP_001730864.1| hypothetical protein ECDH10B_2030 [Escherichia coli str. K-12 substr. DH10B] gi|170684155|ref|YP_001743353.1| flagellar motor protein MotB [Escherichia coli SMS-3-5] gi|188492393|ref|ZP_02999663.1| chemotaxis protein MotB [Escherichia coli 53638] gi|191168098|ref|ZP_03029897.1| chemotaxis protein MotB [Escherichia coli B7A] gi|193065441|ref|ZP_03046510.1| chemotaxis protein MotB [Escherichia coli E22] gi|193069870|ref|ZP_03050819.1| chemotaxis protein MotB [Escherichia coli E110019] gi|194429327|ref|ZP_03061853.1| chemotaxis protein MotB [Escherichia coli B171] gi|194439077|ref|ZP_03071160.1| chemotaxis protein MotB [Escherichia coli 101-1] gi|195939593|ref|ZP_03084975.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. EC4024] gi|208810604|ref|ZP_03252480.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206] gi|208816679|ref|ZP_03257799.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045] gi|208819881|ref|ZP_03260201.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042] gi|209397424|ref|YP_002270973.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115] gi|217329015|ref|ZP_03445096.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588] gi|218695455|ref|YP_002403122.1| flagellar motor protein MotB [Escherichia coli 55989] gi|218705389|ref|YP_002412908.1| flagellar motor protein MotB [Escherichia coli UMN026] gi|238901104|ref|YP_002926900.1| protein that enables flagellar motor rotation [Escherichia coli BW2952] gi|253773154|ref|YP_003035985.1| flagellar motor protein MotB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161949|ref|YP_003045057.1| flagellar motor protein MotB [Escherichia coli B str. REL606] gi|254793513|ref|YP_003078350.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. TW14359] gi|256017907|ref|ZP_05431772.1| flagellar motor protein MotB [Shigella sp. D9] gi|260844299|ref|YP_003222077.1| MotB protein [Escherichia coli O103:H2 str. 12009] gi|260855829|ref|YP_003229720.1| MotB protein [Escherichia coli O26:H11 str. 11368] gi|261227610|ref|ZP_05941891.1| protein that enables flagellar motor rotation [Escherichia coli O157:H7 str. FRIK2000] gi|261258224|ref|ZP_05950757.1| MotB protein [Escherichia coli O157:H7 str. FRIK966] gi|291283071|ref|YP_003499889.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615] gi|293405381|ref|ZP_06649373.1| motB [Escherichia coli FVEC1412] gi|293446276|ref|ZP_06662698.1| chemotaxis protein MotB [Escherichia coli B088] gi|297517349|ref|ZP_06935735.1| flagellar motor protein MotB [Escherichia coli OP50] gi|298381025|ref|ZP_06990624.1| chemotaxis protein motB [Escherichia coli FVEC1302] gi|300819874|ref|ZP_07100059.1| chemotaxis protein MotB [Escherichia coli MS 107-1] gi|300822336|ref|ZP_07102477.1| chemotaxis protein MotB [Escherichia coli MS 119-7] gi|300899142|ref|ZP_07117423.1| chemotaxis protein MotB [Escherichia coli MS 198-1] gi|300924982|ref|ZP_07140907.1| chemotaxis protein MotB [Escherichia coli MS 182-1] gi|300928923|ref|ZP_07144427.1| chemotaxis protein MotB [Escherichia coli MS 187-1] gi|300956597|ref|ZP_07168876.1| chemotaxis protein MotB [Escherichia coli MS 175-1] gi|301029341|ref|ZP_07192438.1| chemotaxis protein MotB [Escherichia coli MS 196-1] gi|301327680|ref|ZP_07220887.1| chemotaxis protein MotB [Escherichia coli MS 78-1] gi|301645593|ref|ZP_07245522.1| chemotaxis protein MotB [Escherichia coli MS 146-1] gi|307138554|ref|ZP_07497910.1| flagellar motor protein MotB [Escherichia coli H736] gi|307314199|ref|ZP_07593809.1| OmpA/MotB domain protein [Escherichia coli W] gi|309796000|ref|ZP_07690413.1| chemotaxis protein MotB [Escherichia coli MS 145-7] gi|312969933|ref|ZP_07784116.1| chemotaxis protein motB [Escherichia coli 1827-70] gi|331642507|ref|ZP_08343642.1| chemotaxis protein MotB [Escherichia coli H736] gi|331653299|ref|ZP_08354304.1| chemotaxis protein MotB [Escherichia coli M718] gi|331668586|ref|ZP_08369434.1| chemotaxis protein MotB [Escherichia coli TA271] gi|331677774|ref|ZP_08378449.1| chemotaxis protein MotB [Escherichia coli H591] gi|332278938|ref|ZP_08391351.1| flagellar motor rotation protein [Shigella sp. D9] gi|84028148|sp|P0AF07|MOTB_ECO57 RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|84028149|sp|P0AF06|MOTB_ECOLI RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|12515953|gb|AAG56879.1|AE005411_3 enables flagellar motor rotation, linking torque machinery to cell wall [Escherichia coli O157:H7 str. EDL933] gi|146883|gb|AAA24178.1| chemotaxis protein MotB [Escherichia coli] gi|1736548|dbj|BAA15710.1| protein that enables flagellar motor rotation [Escherichia coli str. K12 substr. W3110] gi|1788198|gb|AAC74959.1| protein that enables flagellar motor rotation [Escherichia coli str. K-12 substr. MG1655] gi|13362067|dbj|BAB36022.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. Sakai] gi|157067041|gb|ABV06296.1| chemotaxis protein MotB [Escherichia coli HS] gi|157080453|gb|ABV20161.1| chemotaxis protein MotB [Escherichia coli E24377A] gi|169754694|gb|ACA77393.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739] gi|169889379|gb|ACB03086.1| MotB [Escherichia coli str. K-12 substr. DH10B] gi|170521873|gb|ACB20051.1| chemotaxis protein MotB [Escherichia coli SMS-3-5] gi|187768100|gb|EDU31944.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4196] gi|188487592|gb|EDU62695.1| chemotaxis protein MotB [Escherichia coli 53638] gi|188999462|gb|EDU68448.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4076] gi|189355159|gb|EDU73578.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4401] gi|189360307|gb|EDU78726.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4486] gi|189367322|gb|EDU85738.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4501] gi|189370705|gb|EDU89121.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC869] gi|189376024|gb|EDU94440.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC508] gi|190901896|gb|EDV61646.1| chemotaxis protein MotB [Escherichia coli B7A] gi|192926846|gb|EDV81471.1| chemotaxis protein MotB [Escherichia coli E22] gi|192956770|gb|EDV87224.1| chemotaxis protein MotB [Escherichia coli E110019] gi|194412634|gb|EDX28930.1| chemotaxis protein MotB [Escherichia coli B171] gi|194422036|gb|EDX38040.1| chemotaxis protein MotB [Escherichia coli 101-1] gi|208725120|gb|EDZ74827.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4206] gi|208731022|gb|EDZ79711.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4045] gi|208740004|gb|EDZ87686.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4042] gi|209158824|gb|ACI36257.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. EC4115] gi|209767220|gb|ACI81922.1| chemotaxis protein MotB [Escherichia coli] gi|209767222|gb|ACI81923.1| chemotaxis protein MotB [Escherichia coli] gi|209767224|gb|ACI81924.1| chemotaxis protein MotB [Escherichia coli] gi|209767226|gb|ACI81925.1| chemotaxis protein MotB [Escherichia coli] gi|217318362|gb|EEC26789.1| chemotaxis protein MotB [Escherichia coli O157:H7 str. TW14588] gi|218352187|emb|CAU97928.1| protein that enables flagellar motor rotation [Escherichia coli 55989] gi|218432486|emb|CAR13379.1| protein that enables flagellar motor rotation [Escherichia coli UMN026] gi|238863319|gb|ACR65317.1| protein that enables flagellar motor rotation [Escherichia coli BW2952] gi|242377610|emb|CAQ32366.1| MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324198|gb|ACT28800.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973850|gb|ACT39521.1| flagellar motor protein MotB [Escherichia coli B str. REL606] gi|253978044|gb|ACT43714.1| flagellar motor protein MotB [Escherichia coli BL21(DE3)] gi|254592913|gb|ACT72274.1| protein that enables flagellar motor rotation [Escherichia coli O157:H7 str. TW14359] gi|257754478|dbj|BAI25980.1| MotB protein [Escherichia coli O26:H11 str. 11368] gi|257759446|dbj|BAI30943.1| MotB protein [Escherichia coli O103:H2 str. 12009] gi|260448988|gb|ACX39410.1| OmpA/MotB domain protein [Escherichia coli DH1] gi|290762944|gb|ADD56905.1| Chemotaxis protein motB [Escherichia coli O55:H7 str. CB9615] gi|291323106|gb|EFE62534.1| chemotaxis protein MotB [Escherichia coli B088] gi|291427589|gb|EFF00616.1| motB [Escherichia coli FVEC1412] gi|298278467|gb|EFI19981.1| chemotaxis protein motB [Escherichia coli FVEC1302] gi|299877767|gb|EFI85978.1| chemotaxis protein MotB [Escherichia coli MS 196-1] gi|300316579|gb|EFJ66363.1| chemotaxis protein MotB [Escherichia coli MS 175-1] gi|300357232|gb|EFJ73102.1| chemotaxis protein MotB [Escherichia coli MS 198-1] gi|300418857|gb|EFK02168.1| chemotaxis protein MotB [Escherichia coli MS 182-1] gi|300463077|gb|EFK26570.1| chemotaxis protein MotB [Escherichia coli MS 187-1] gi|300525219|gb|EFK46288.1| chemotaxis protein MotB [Escherichia coli MS 119-7] gi|300527571|gb|EFK48633.1| chemotaxis protein MotB [Escherichia coli MS 107-1] gi|300845775|gb|EFK73535.1| chemotaxis protein MotB [Escherichia coli MS 78-1] gi|301076125|gb|EFK90931.1| chemotaxis protein MotB [Escherichia coli MS 146-1] gi|306906168|gb|EFN36686.1| OmpA/MotB domain protein [Escherichia coli W] gi|308120450|gb|EFO57712.1| chemotaxis protein MotB [Escherichia coli MS 145-7] gi|309702112|emb|CBJ01427.1| chemotaxis protein MotB (motility protein B) [Escherichia coli ETEC H10407] gi|310338218|gb|EFQ03307.1| chemotaxis protein motB [Escherichia coli 1827-70] gi|315061195|gb|ADT75522.1| protein that enables flagellar motor rotation [Escherichia coli W] gi|315136532|dbj|BAJ43691.1| chemotaxis protein motB [Escherichia coli DH1] gi|320188589|gb|EFW63251.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. EC1212] gi|320198585|gb|EFW73185.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B] gi|320641743|gb|EFX11131.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. G5101] gi|320657987|gb|EFX25749.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658560|gb|EFX26254.1| flagellar motor protein MotB [Escherichia coli O55:H7 str. USDA 5905] gi|320668458|gb|EFX35285.1| flagellar motor protein MotB [Escherichia coli O157:H7 str. LSU-61] gi|323152620|gb|EFZ38896.1| chemotaxis protein motB [Escherichia coli EPECa14] gi|323174594|gb|EFZ60215.1| chemotaxis protein motB [Escherichia coli LT-68] gi|323186334|gb|EFZ71684.1| chemotaxis protein motB [Escherichia coli 1357] gi|323378228|gb|ADX50496.1| OmpA/MotB domain protein [Escherichia coli KO11] gi|323937148|gb|EGB33428.1| OmpA family protein [Escherichia coli E1520] gi|323940442|gb|EGB36633.1| OmpA family protein [Escherichia coli E482] gi|323961944|gb|EGB57543.1| OmpA family protein [Escherichia coli H489] gi|323972601|gb|EGB67804.1| OmpA family protein [Escherichia coli TA007] gi|324118949|gb|EGC12838.1| OmpA family protein [Escherichia coli E1167] gi|326342267|gb|EGD66048.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1044] gi|326343818|gb|EGD67580.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1125] gi|331039305|gb|EGI11525.1| chemotaxis protein MotB [Escherichia coli H736] gi|331049397|gb|EGI21469.1| chemotaxis protein MotB [Escherichia coli M718] gi|331063780|gb|EGI35691.1| chemotaxis protein MotB [Escherichia coli TA271] gi|331074234|gb|EGI45554.1| chemotaxis protein MotB [Escherichia coli H591] gi|332089624|gb|EGI94726.1| chemotaxis protein motB [Shigella boydii 5216-82] gi|332101290|gb|EGJ04636.1| flagellar motor rotation protein [Shigella sp. D9] gi|332343616|gb|AEE56950.1| chemotaxis protein MotB [Escherichia coli UMNK88] Length = 308 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|170023989|ref|YP_001720494.1| flagellar motor protein MotB [Yersinia pseudotuberculosis YPIII] gi|169750523|gb|ACA68041.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] Length = 451 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 +Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 TQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|323968311|gb|EGB63718.1| OmpA family protein [Escherichia coli M863] gi|327253019|gb|EGE64673.1| chemotaxis protein motB [Escherichia coli STEC_7v] Length = 308 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|194434087|ref|ZP_03066356.1| chemotaxis protein MotB [Shigella dysenteriae 1012] gi|300951513|ref|ZP_07165348.1| chemotaxis protein MotB [Escherichia coli MS 116-1] gi|194417631|gb|EDX33731.1| chemotaxis protein MotB [Shigella dysenteriae 1012] gi|300449263|gb|EFK12883.1| chemotaxis protein MotB [Escherichia coli MS 116-1] gi|332095082|gb|EGJ00116.1| chemotaxis protein motB [Shigella dysenteriae 155-74] Length = 308 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM GV ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGVDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|315125812|ref|YP_004067815.1| flagellar motor protein MotB [Pseudoalteromonas sp. SM9913] gi|315014326|gb|ADT67664.1| flagellar motor protein MotB [Pseudoalteromonas sp. SM9913] Length = 306 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 114/305 (37%), Gaps = 35/305 (11%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 CKCPPPGLPAWMGTFADLMSLLMCFFVLLLAFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F QN E K I T + T Q++ + + + + + + S Sbjct: 55 AFGVQNKIEVKDIPKGTSVIAMEFTPGKPEPTPIETIQQQTVEMTQQMLEFQAGDESSAG 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + G+ S ++ + ++ ++++ DL KKI+ Sbjct: 115 GRQEQRGEKRGGESSSTSEEV---------------AAATAVSAADQEQINDLVKKIAQQ 159 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + D ++ E+ I+I I R F S+ P+ ++Q IG +L Sbjct: 160 LEKQIIDGAIE---LESLGQQIIIRI---RENGSFPSGSAFLQPQFKPIIQDIGRLLKDV 213 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320 I++ GHTD N +NW LS RA + L K G + R+ + G A R Sbjct: 214 PGEITVSGHTDDFQVSNELYINNWDLSSKRAVAVASELQKVPGFDKTRMM-VVGRAETRP 272 Query: 321 KIASD 325 + +D Sbjct: 273 LVPND 277 >gi|323948225|gb|EGB44213.1| OmpA family protein [Escherichia coli H120] Length = 308 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV +++ Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKEA 269 >gi|116694193|ref|YP_728404.1| flagellar motor protein MotB [Ralstonia eutropha H16] gi|113528692|emb|CAJ95039.1| Chemotaxis protein [Ralstonia eutropha H16] Length = 321 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 3/189 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVL 216 L K + P +++ + +RL+ L +++ + V +L Sbjct: 87 GGQDALRKDGDTMRARTNEPSDEQRRNEQQEAQRLRALKQRLEQIIENNPVLRQFRPQLL 146 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + T G+ I I+D +N PMF S+ +L++IG VL +S+ GHTDA+ Sbjct: 147 LDITSEGLRIQILDTQNRPMFRTGSATVETYMRTILREIGPVLNELPNKVSLSGHTDAAN 206 Query: 277 FRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N NW LS DRA ++ + L+ G+ E ++ ++ G A D + NRRI Sbjct: 207 YSNGERTYSNWELSGDRANASRRELIAGGMQEGKVLRVLGLAATMPLDKEDLLAPVNRRI 266 Query: 335 DILVEDRQG 343 I+V + + Sbjct: 267 SIVVLNHKA 275 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + +D II ++ P+ SWKI YADFMT +MA FLV+W++++ + T + I + Sbjct: 2 SSAHDMRPIIVRRAKSHARPHGNHSWKIAYADFMTAMMALFLVLWLLSSANKKTLEGIAE 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YF K + + + Q+ + D + + N++++ QRL Sbjct: 62 YFRMPLKVAIVGGEKSSQTPSVIPGGGQDALRKDGDTMRARTNEPSDEQRRNEQQEAQRL 121 Query: 128 E 128 Sbjct: 122 R 122 >gi|262402758|ref|ZP_06079319.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586] gi|262351540|gb|EEZ00673.1| Flagellar motor rotation protein MotB [Vibrio sp. RC586] Length = 304 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 120/319 (37%), Gaps = 47/319 (14%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFD 85 W +AD M++LM FF+++ + D K I N + I Sbjct: 2 WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61 Query: 86 EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 ++ P R ID+ + + IT+ +++ + G +++ QR + +++ S Sbjct: 62 QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGDSDRAGGNQRDSGKLTGGQSAESSTQE 121 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + D ++ + A ++++ +A+ I L Sbjct: 122 NQNTQSDMQQQQ-----------------------------AKAMSEQMETVAESIKKAL 152 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 S + ++ E I I I R F + S+ P+ ++++I +++ Sbjct: 153 SREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIP 206 Query: 264 EVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + GHTD + R NW LS RA S Q + K + + ++ G A + Sbjct: 207 GKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQRLQVRGMADTQPLG 266 Query: 323 ASDPMNSA--NRRIDILVE 339 +D NRR++I + Sbjct: 267 PNDTEAQRALNRRVEISIL 285 >gi|163854227|ref|YP_001642270.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens PA1] gi|218533172|ref|YP_002423988.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|240141687|ref|YP_002966167.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1] gi|163665832|gb|ABY33199.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1] gi|218525475|gb|ACK86060.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|240011664|gb|ACS42890.1| putative chemotaxis protein MotB [Methylobacterium extorquens AM1] Length = 277 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 111/321 (34%), Gaps = 61/321 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 + W + +AD M +LM+FF+++ + D + + + FG N + Sbjct: 3 KKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQVVAGSMRDAFGVNKESK 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + + P + Sbjct: 63 FAGILESEGIPTADKFKHLR---------------------------------------- 82 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E+ D ++ ++ P + + A ++ +QD+ + Sbjct: 83 --------DVPPERATDRTTPPQIDSGLDDGIPDRGYPDAFGQAAA-SLRQAMQDMPEVA 133 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+ R G+ +SI+DQ MF + SS P T +L+++ L Sbjct: 134 E----------LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTL 183 Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I++ G T P W LS +RA S VL +G+ +DR + ++G A Sbjct: 184 MKLPNRIAVTGFTATTRPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADT 243 Query: 319 RLKIASDPMNSANRRIDILVE 339 +P +ANRR+ + + Sbjct: 244 EPMFPDNPYLAANRRVTVTLL 264 >gi|323977926|gb|EGB73012.1| OmpA family protein [Escherichia coli TW10509] Length = 308 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|293395565|ref|ZP_06639848.1| chemotaxis MotB protein [Serratia odorifera DSM 4582] gi|291421884|gb|EFE95130.1| chemotaxis MotB protein [Serratia odorifera DSM 4582] Length = 330 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 3/180 (1%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + L + + RL L +++ + ++ +L G+ Sbjct: 86 GDDPTQLEGLVRKQLDSPEKQAEELRLNKLRERLDELIESDPRLKALRPHLLINMMDEGL 145 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--AR 282 I IID +N PMF S+ +L+ I +L IS+ GHTD P+ Sbjct: 146 RIQIIDSQNRPMFTTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDLPYATGERYY 205 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS DRA ++ + L+ G+SE ++ ++ G A ++ NRRI ILV ++Q Sbjct: 206 SNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITILVLNKQ 265 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 4/191 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + +I+ +K ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 2 KQNHPVILVRKRKAHQVAHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K +T E +P + L +S + + K +RL+ Sbjct: 62 RTPLKVALTTGNKSSSESSPIPGGGDDPTQLEGLVRKQLDSPEKQAEELRLNKLRERLDE 121 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 I S+ + + L ++G + + + + + ++ + A+ Sbjct: 122 LI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFTTGSAQVESYMRDILRAIA-- 177 Query: 190 KRLQDLAKKIS 200 L DL KIS Sbjct: 178 PILNDLPNKIS 188 >gi|74311761|ref|YP_310180.1| flagellar motor protein MotB [Shigella sonnei Ss046] gi|73855238|gb|AAZ87945.1| MotB [Shigella sonnei Ss046] Length = 308 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q +E+ + L G + S + ++K+ + +K+ Q + Sbjct: 57 QIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEDLKKRMEQSRLR 116 Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 K+ L L+ + + + + + G+ I IID +N PMF S+ P +L Sbjct: 117 KLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDIL 176 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL IS+ GHTD P+ + NW LS DRA ++ + LM G+ ++ Sbjct: 177 RVIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 236 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A P ++ NRRI +LV ++Q Sbjct: 237 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|311105916|ref|YP_003978769.1| motility protein B 1 [Achromobacter xylosoxidans A8] gi|310760605|gb|ADP16054.1| motility protein B 1 [Achromobacter xylosoxidans A8] Length = 330 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 4/204 (1%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 +S S E + + + + + + RL++L K++ Sbjct: 72 AGGPSSSAETSAVPGGGSDPLRSEGDVRRAQGNRVEAQPMGD-AERREQHRLENLKKRLE 130 Query: 201 STLS-GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + V + +L + T G+ I IID +N PMF + P +L+++G VL Sbjct: 131 NVIETSPVLKSFRPQLLIDLTTEGLRIQIIDNQNRPMFATGRADVQPYMRDILRELGPVL 190 Query: 260 AHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 +SI GHTDAS + A NW LS DRA ++ Q L+ G++E ++ +I G + Sbjct: 191 NELPNKVSISGHTDASQYARGERAYSNWELSADRANASRQELVAGGMNESKVLRIQGLSS 250 Query: 318 HRLKIASDPMNSANRRIDILVEDR 341 + DP + NRRI ++V ++ Sbjct: 251 SMSLVKDDPYAAVNRRISLVVLNQ 274 >gi|167466606|ref|ZP_02331310.1| flagellar motor protein MotB [Yersinia pestis FV-1] Length = 427 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 5/211 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK--RLQD 194 Q +E+ + L G ST + + + K+ R++ RL Sbjct: 57 PQIAEYFRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNK 116 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +K+ + ++ +L G+ I IID +N PMF S+ P +L+ Sbjct: 117 LREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILR 176 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L +S+ GHTD P+ NW LS DRA ++ + L+ G+ E +I + Sbjct: 177 AIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + NRRI ILV ++Q Sbjct: 237 VVGMASTMRLKEQASDDPVNRRISILVLNKQ 267 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ + GSWKI YA MT +MAFFL + + I +Y Sbjct: 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYAKVMTAMMAFFLGAVRLAVSSPQELPQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T+ +P + + NS + + K ++L+ Sbjct: 63 FRTPLKVALTSGDKSSSSTSPIPGGGDDPTQQVGEVRKQINSEESRQEIHRLNKLREKLD 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I S+ + + L ++G + + + K + + P ++ + A+ Sbjct: 123 QLI--ESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEPYMRDILRAIA- 179 Query: 189 KKRLQDLAKKIS 200 L D+ K+S Sbjct: 180 -PILNDIPNKLS 190 >gi|188579878|ref|YP_001923323.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179343376|gb|ACB78788.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 470 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 2/270 (0%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 + + + +++P + Q+ + + S + + + R Sbjct: 198 LDARAQTGTPSKAKEAQKESPKATARQSLHEAMRQAGVKLASAEPMPLEAPKSVEPARPV 257 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ +E + L K+ + P ++ Sbjct: 258 EPTKPAADAVPETGAPEIKALPTEGKPTQPEPQRLAKA--EVPAVKEPAAGADQPAKAAE 315 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L L +I+ + L + T G+LISI D+ N MF S+ P P+ Sbjct: 316 TAALSALKAEIARAVPSLPNSAPAPHLEVRRTGEGVLISITDEINFSMFGIGSAEPTPKV 375 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + L++I ++L I +RGHTD PFR+ DNWRLS RA A +L++ G+ E R Sbjct: 376 VKALERIAKILNSRPGRIVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEAR 435 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338 I +I G+A + +IA+DP + NRRI+IL+ Sbjct: 436 IERIEGYADRQPRIAADPKAAENRRIEILL 465 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 4/180 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YF Sbjct: 3 EHAHEIIIIKRHGDHEDGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP +T KG+ D Q+ P + + D + D ++ ++ + Sbjct: 63 NPVKLAEVTHDRKGVNDPQDTPNDPAPSGKGKG-DGGNAEGKADAAGAPGSRARESALFQ 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + L+ + + + F P + L +R Sbjct: 122 DPYAVLAKLAAEAEAGPEAASADAAALEAGQPG--VAGGETGRDPFDPLYWQVAALPRQR 179 >gi|294675563|ref|YP_003576178.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003] gi|294474383|gb|ADE83771.1| chemotaxis protein MotB [Rhodobacter capsulatus SB 1003] Length = 283 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 65/337 (19%), Positives = 126/337 (37%), Gaps = 65/337 (19%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + +IIK+K + ++ G+WK+ YADF+T +MAFFL+MW++NAT + +K Sbjct: 4 HDGVAPVIIKRKKVVGGGGHHGGAWKVAYADFVTAMMAFFLLMWLLNATTEKQRK----- 58 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 GI D NP ++ + ++ Q Sbjct: 59 -------------GIADYFNPTIPINRISGGGEGAFGGDSVFSEDQVAQNGTGASGQMPT 105 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 EE K + Sbjct: 106 -----------------------------------------EERQARGDSGAAKEEQKQD 124 Query: 189 KKRLQDLAKKISSTLSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + +AK+I LS +V++ + + ++ + T G+++ D + P+F ++ Sbjct: 125 QAEFDRMAKEIEKALSATSGESMVSEQLARHIVTKVTDEGLIVEFFDLEDEPLFRPDTAE 184 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P P + + V + ++I GHT + P W LS +RA ++ +G Sbjct: 185 PEPILGEIAGMLTRVFGLTKNNVAINGHTRSYPSMLRTNPVWDLSSERAQRMRILMETAG 244 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ ++SGFA + + + M+ N R+++++ Sbjct: 245 FDAARLQRVSGFADRKPAVETR-MSVRNNRLELILLR 280 >gi|256022446|ref|ZP_05436311.1| flagellar motor protein MotB [Escherichia sp. 4_1_40B] gi|300917528|ref|ZP_07134185.1| chemotaxis protein MotB [Escherichia coli MS 115-1] gi|300415233|gb|EFJ98543.1| chemotaxis protein MotB [Escherichia coli MS 115-1] Length = 308 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLWKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|260598378|ref|YP_003210949.1| flagellar motor protein MotB [Cronobacter turicensis z3032] gi|260217555|emb|CBA31774.1| Chemotaxis protein motB [Cronobacter turicensis z3032] Length = 310 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 3/191 (1%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK- 213 D + + + +++ + RLQ L + + ++ Sbjct: 80 SDSPIPGGGDDVTQTQGEVKKQEPNIDELKKRMERNRLQKLRGDLDQLIEADPKLRALRP 139 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 + + + G+ I IID +N PMF S+ P +L+ I VL +S+ GHTD Sbjct: 140 HLRIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTD 199 Query: 274 ASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 P+ N NW LS DRA S+ + L+ G+ + ++ ++ G A + N Sbjct: 200 DFPYANGERGYSNWELSADRANSSRRELVIGGLDDGKVLRVVGMAATMRLAEKGANEALN 259 Query: 332 RRIDILVEDRQ 342 RRI +LV ++Q Sbjct: 260 RRISLLVLNKQ 270 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 1/179 (0%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 4 SNHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYF 63 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +T I D +P + + + ++D + + + + Sbjct: 64 RTPLSAAITGGHRIADSDSPIPGGGDDVTQTQGEVKKQEPNIDELKKRMERNRLQKLRGD 123 Query: 130 NIFYLSNSQQSEHCKNSLT-RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + L ++G + + + K + + P ++ + A+ Sbjct: 124 LDQLIEADPKLRALRPHLRIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA 182 >gi|313650105|gb|EFS14518.1| chemotaxis protein motB [Shigella flexneri 2a str. 2457T] gi|332756040|gb|EGJ86393.1| chemotaxis protein motB [Shigella flexneri 4343-70] gi|333017760|gb|EGK37067.1| chemotaxis protein motB [Shigella flexneri K-227] Length = 275 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 58 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRI 117 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 118 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 177 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 178 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 236 >gi|156933520|ref|YP_001437436.1| flagellar motor protein MotB [Cronobacter sakazakii ATCC BAA-894] gi|156531774|gb|ABU76600.1| hypothetical protein ESA_01340 [Cronobacter sakazakii ATCC BAA-894] Length = 310 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 3/178 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + +++ + RLQ L + + ++ + + + G+ I Sbjct: 93 QSQGEVKKQEPNIDELKKRMERNRLQKLRGDLDQLIEADPKLRALRPHLRIDLVQEGLRI 152 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL +S+ GHTD P+ N N Sbjct: 153 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNKVSLSGHTDDFPYANGERGYSN 212 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 W LS DRA ++ + L+ G+ + ++ ++ G A + NRRI +LV ++Q Sbjct: 213 WELSADRANASRRELVIGGLDDGKVLRVVGMAATMRLAEKGANEALNRRISLLVLNKQ 270 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 1/179 (0%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N +I+KK+ + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 4 SNHPVVIVKKRKHKGHGGGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELTQIAEYF 63 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +T I D ++P + + + ++D + + + + Sbjct: 64 RTPLSAAITGGHRIADSESPIPGGGDDVTQSQGEVKKQEPNIDELKKRMERNRLQKLRGD 123 Query: 130 NIFYLSNSQQSEHCKNSLT-RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + + L ++G + + + K + + P ++ + A+ Sbjct: 124 LDQLIEADPKLRALRPHLRIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA 182 >gi|269138690|ref|YP_003295391.1| flagellar motor protein [Edwardsiella tarda EIB202] gi|267984351|gb|ACY84180.1| flagellar motor protein [Edwardsiella tarda EIB202] gi|304558696|gb|ADM41360.1| Flagellar motor rotation protein MotB [Edwardsiella tarda FL6-60] Length = 332 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 3/203 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +L+ + ++E + RL+ L +++ + Sbjct: 68 KVALSEGQRSSDSFSPIPGGGDDVTQKEGEVRKFAEDPDPQTRAEQMRLKRLRERLEQVI 127 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ ++ G+ I IID +N PMF S+ P +L+ I +L Sbjct: 128 INDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIAPILNEL 187 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 IS+ GHTD P+ N NW LS DRA ++ + L+ G++ ++I ++ G A Sbjct: 188 PNKISLSGHTDDLPYANGERGYSNWELSADRANASRRELIAGGLAGNKILRVVGMADTMN 247 Query: 321 KIASDPMNSANRRIDILVEDRQG 343 + NRRI ILV ++ Sbjct: 248 LRNLAGNAAVNRRISILVLNKAA 270 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 2/190 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 I++KKK ++ G+WKI YADFMT +MAFFLVMW++ I +YF Sbjct: 5 KHPVILVKKKRGGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYFR 64 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K ++ + D +P + + D + + + + R Sbjct: 65 TPLKVALSEGQRSSDSFSPIPGGGDDVTQKEGEVRKFAEDPDPQTRAEQMRLKRLRERLE 124 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 +++ + + + ++G + + + + + + P + + A+ Sbjct: 125 QVIINDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSAQVEPYMRNILRAIA--P 182 Query: 191 RLQDLAKKIS 200 L +L KIS Sbjct: 183 ILNELPNKIS 192 >gi|323191390|gb|EFZ76652.1| lateral flagellar motor protein B [Escherichia coli RN587/1] Length = 307 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 126/343 (36%), Gaps = 70/343 (20%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + Q+ + ++ H+ K + T + Sbjct: 61 ERESIIAALH---------------GQSIFNGGGLSPLNKISPSHLPKPATVAVPEETEK 105 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + + + ++ + S+ + E +P + Sbjct: 106 KARDVNEKTALLKKKSATELGELATSINTIARDAHMEANL----------EMEIVPQGLR 155 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 I + + + + KI P F Sbjct: 156 VLIKDDQNRNMFERGSAKIM----------------------------------PFFKTL 181 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 P + I I GHTDA ++N +NW LS DRA SA +VL Sbjct: 182 LVELAPVFDSL-----------DNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLE 230 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 231 EAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273 >gi|311279213|ref|YP_003941444.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1] gi|308748408|gb|ADO48160.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1] Length = 309 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q +E+ + L G + S+ + + KE + +K+ Q+ K Sbjct: 58 QIAEYFRTPLATAITGGPRVSNSSSPIPGGGDDFTQQQGEVKKEPNIDELKKRMEQNRLK 117 Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 KI L L+ + + + + + G+ I IID +N PMF S+ P +L Sbjct: 118 KIRGELDQLIEADPKLKALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDIL 177 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL IS+ GHTD + N NW LS +RA ++ + L+ G+ + ++ Sbjct: 178 RAIAPVLNEIPNKISLSGHTDDYQYANGDRGYSNWELSAERANASRRELVAGGLDDGKVL 237 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A+ ++ NRRI +LV + Q Sbjct: 238 RVVGMANTMKLQEHGGDDAINRRISLLVLNNQA 270 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 3/194 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + ++++++ + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQSHP-IVVVRRRKHKNHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T + + +P + + N +LK + + R Sbjct: 61 EYFRTPLATAITGGPRVSNSSSPIPGGGDDFTQQQGEVKKEPNIDELKKRMEQNRLKKIR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 E + ++ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GELDQLIEADPKLKALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 KRKKRLQDLAKKIS 200 L ++ KIS Sbjct: 181 A--PVLNEIPNKIS 192 >gi|306813285|ref|ZP_07447478.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101] gi|305854048|gb|EFM54487.1| hypothetical protein ECNC101_15272 [Escherichia coli NC101] Length = 307 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 126/343 (36%), Gaps = 70/343 (20%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + Q+ + ++ H+ K + T + Sbjct: 61 ERESIIAALH---------------GQSIFNGGGLSPLNKISPSHLPKPATVAVPEETEK 105 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + + + ++ + S+ + E +P + Sbjct: 106 KARDVNEKTALLKKKSATELGELATSINTIARDAHMEANL----------EMEIVPQGLR 155 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 I + + + + KI P F Sbjct: 156 VLIKDDQNRNMFERGSAKIM----------------------------------PFFKTL 181 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 P + I I GHTDA ++N +NW LS DRA SA +VL Sbjct: 182 LVELAPVFDSL-----------DNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLE 230 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 231 EAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273 >gi|323158625|gb|EFZ44639.1| chemotaxis protein motB [Escherichia coli E128010] Length = 275 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 58 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 117 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 118 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 177 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 178 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 236 >gi|301018263|ref|ZP_07182776.1| chemotaxis protein MotB [Escherichia coli MS 69-1] gi|306814281|ref|ZP_07448447.1| flagellar motor protein MotB [Escherichia coli NC101] gi|300399773|gb|EFJ83311.1| chemotaxis protein MotB [Escherichia coli MS 69-1] gi|305852440|gb|EFM52891.1| flagellar motor protein MotB [Escherichia coli NC101] Length = 308 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|90408165|ref|ZP_01216333.1| flagellar motor protein [Psychromonas sp. CNPT3] gi|90310695|gb|EAS38812.1| flagellar motor protein [Psychromonas sp. CNPT3] Length = 299 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 114/324 (35%), Gaps = 43/324 (13%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W +AD M++LM FF+++ + D K I K Sbjct: 6 CKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM-----------KF 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 F Q+ E K I + T D +K + E + + Sbjct: 55 AFGVQSMLEVKDIPKGTSVIAQEFTPGRPDPTPIEVIMQKTIEMTEAKLDFSEGDSSRAD 114 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + D + + E S + LAK ++ Sbjct: 115 GEEDSKEDIPEEGNQGNEQSSEAS-----------------------EAQHQLAKAVAQE 151 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + + ++ E+ ++I I R F S+ P V++K+ ++LA Sbjct: 152 LQDEIQEGAIE---IESLGQQLIIRI---REKGAFPSGSAFLQPRFRPVIRKVAKILADI 205 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 VI+I GHTD + + R NW LS RA S ++K ++ ++G+A+ + Sbjct: 206 PGVITISGHTDNEQVHSELYRSNWDLSAQRAVSVAHEMLKIKKIRNKHLVVAGYANSKPL 265 Query: 322 IASD--PMNSANRRIDILVEDRQG 343 S NRR++I++ + Sbjct: 266 TDSKILSERKRNRRVEIMIMQGEA 289 >gi|281178957|dbj|BAI55287.1| chemotaxis protein MotB [Escherichia coli SE15] Length = 308 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 3/166 (1%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239 E++ + RL+ L + + ++ + + + G+ I IID +N PMF Sbjct: 104 EELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRT 163 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S+ P +L+ I VL IS+ GHTD P+ + NW LS DRA ++ + Sbjct: 164 GSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRR 223 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 LM G++ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 224 ELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|323165315|gb|EFZ51103.1| chemotaxis protein motB [Shigella sonnei 53G] Length = 275 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q +E+ + L G + S + ++K+ + +K+ Q + Sbjct: 24 QIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEDLKKRMEQSRLR 83 Query: 198 KISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 K+ L L+ + + + + + G+ I IID +N PMF S+ P +L Sbjct: 84 KLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDIL 143 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL IS+ GHTD P+ + NW LS DRA ++ + LM G+ ++ Sbjct: 144 RAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 203 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ G A P ++ NRRI +LV ++Q Sbjct: 204 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 236 >gi|168234012|ref|ZP_02659070.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205331986|gb|EDZ18750.1| chemotaxis protein MotB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 309 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ HTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLARHTDDFPYANGEKGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 270 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180 Query: 187 K 187 Sbjct: 181 A 181 >gi|331683396|ref|ZP_08383997.1| chemotaxis protein MotB [Escherichia coli H299] gi|284921808|emb|CBG34881.1| chemotaxis protein MotB (motility protein B) [Escherichia coli 042] gi|331079611|gb|EGI50808.1| chemotaxis protein MotB [Escherichia coli H299] Length = 308 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|188584558|ref|YP_001928003.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179348056|gb|ACB83468.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 277 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 61/322 (18%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 + W + +AD M +LM+FF+++ + D + + + FG N + Sbjct: 3 KKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQVVAGSMRDAFGVNKESK 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + + P + Sbjct: 63 FAGILESEGIPTADKFKHLR---------------------------------------- 82 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E+ D ++ ++ P + + A ++ +QD+ + Sbjct: 83 --------DVPPERATDRTTPPQIDSGLDDGIPDRGYPDAFGQAAA-SLRQAMQDMPEVA 133 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+ +R G+ +SI+DQ MF + SS P T +L+++ L Sbjct: 134 E----------LSKNVIIAPSRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLAPTL 183 Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I++ G T A P W LS +RA S VL +G+ +DR + ++G A Sbjct: 184 MKLSNRIAVTGFTATARPGTRDTAPPWELSANRALSVRDVLANAGLPDDRFASVAGKADT 243 Query: 319 RLKIASDPMNSANRRIDILVED 340 +P +ANRR+ + + Sbjct: 244 EPMFPDNPYLAANRRVTVTLLS 265 >gi|332284002|ref|YP_004415913.1| chemotaxis protein [Pusillimonas sp. T7-7] gi|330427955|gb|AEC19289.1| chemotaxis protein [Pusillimonas sp. T7-7] Length = 310 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 3/161 (1%) Query: 186 MKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ +RL++L ++ + + + +L + T G+ I IID++N PMF S+ Sbjct: 108 LRDVERLENLKAELETLIETDPILQQFRPQLLLDMTPDGLRIQIIDKQNRPMFATGSAQV 167 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302 +L+++G +SI GHTD+ + + NW LS DRA +A + L+ Sbjct: 168 QSYMRDILRQLGPTFNRLPNPLSISGHTDSIQYASGERDYSNWELSADRANAARRELVAG 227 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ E ++ ++ G + I +P + NRRI I+V +++ Sbjct: 228 GMGESKVKRVLGLSSSVSLIKDNPAAAVNRRISIVVLNQRA 268 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + I+ ++ + + SWKI YADF+T +MAFFLVMW++ + + +YF Sbjct: 3 KQEPRIVIRRKRSHVSVKHNDSWKIAYADFVTAMMAFFLVMWLVALVPQKDLQEMAEYFR 62 Query: 71 PFGKNLMTA------SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + + NP + + I D + D++ + + Sbjct: 63 MPLMTAVKGGPKNDTGSSVIPSGNPSIIPNPSPIASRGDARTEGDLRDVERLENLKAELE 122 Query: 125 QRLENNIFYLSNSQQ 139 +E + Q Sbjct: 123 TLIETDPILQQFRPQ 137 >gi|331647484|ref|ZP_08348576.1| chemotaxis protein MotB [Escherichia coli M605] gi|330911699|gb|EGH40209.1| flagellar motor rotation protein MotB [Escherichia coli AA86] gi|331043208|gb|EGI15346.1| chemotaxis protein MotB [Escherichia coli M605] Length = 308 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 3/166 (1%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239 E++ + RL+ L + + ++ + + + G+ I IID +N PMF Sbjct: 104 EELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRT 163 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S+ P +L+ I VL IS+ GHTD P+ + NW LS DRA ++ + Sbjct: 164 GSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRR 223 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 LM G++ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 224 ELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 269 >gi|254564195|ref|YP_003071290.1| chemotaxis protein MotB [Methylobacterium extorquens DM4] gi|254271473|emb|CAX27488.1| putative chemotaxis protein MotB [Methylobacterium extorquens DM4] Length = 277 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 111/321 (34%), Gaps = 61/321 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 + W + +AD M +LM+FF+++ + D + + + FG N + Sbjct: 3 KKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQVVAGSMRDAFGVNKESK 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 GI + + P + Sbjct: 63 FAGILESEGIPTADKFKHLR---------------------------------------- 82 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E+ D ++ ++ P + + A ++ +QD+ + Sbjct: 83 --------DVPPERATDRTTPPQIDSGLDDGIPDRGYPDAFGQAAA-SLRQAMQDMPEVA 133 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+ R G+ +SI+DQ MF + SS P T +L+++ L Sbjct: 134 E----------LSKNVIIAPNRKGLDVSIVDQDGRSMFPEGSSRPNDRTRRLLERLTPTL 183 Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I++ G T P W LS +RA S VL +G+ +DR + ++G A Sbjct: 184 MKLPNRIAVTGFTATTRPGTRDTAPPWELSANRALSVRDVLAGAGLPDDRFASVTGKADT 243 Query: 319 RLKIASDPMNSANRRIDILVE 339 +P +ANRR+ + + Sbjct: 244 EPMFPDNPYLAANRRVTVTLL 264 >gi|257097127|pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Ii) gi|257097128|pdb|2ZVY|B Chain B, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Ii) gi|257097129|pdb|2ZVZ|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Iii) gi|257097130|pdb|2ZVZ|B Chain B, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form Iii) Length = 183 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239 +++ + RL L + + ++ + + + G+ I IID +N PMF Sbjct: 7 DELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKT 66 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S+ P +L+ I VL IS+ GHTD P+ N NW LS DRA ++ + Sbjct: 67 GSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRR 126 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 127 ELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 172 >gi|59889800|emb|CAH19156.1| Lateral flagellar motor protein B (MotB-like) [Escherichia coli] gi|284920064|emb|CBG33121.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli 042] Length = 307 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 125/343 (36%), Gaps = 70/343 (20%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + Q+ + ++ H K + T + Sbjct: 61 ERESIIAALH---------------GQSIFNGGGLSPLNKISPSHPPKPATVAAPEETEK 105 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + + + ++ + S+ + E +P + Sbjct: 106 KARDVNEKTALLKKKSATELGELATSINTIARDAHMEANL----------EMEIVPQGLR 155 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 I + + + + +I P F Sbjct: 156 VLIKDDQNRNMFERGSAQIM----------------------------------PFFKTL 181 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 P + I I GHTDA ++N +NW LS DRA SA +VL Sbjct: 182 LVELAPVFDSL-----------DNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLE 230 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 231 EAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273 >gi|238751745|ref|ZP_04613233.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380] gi|238710016|gb|EEQ02246.1| hypothetical protein yrohd0001_35140 [Yersinia rohdei ATCC 43380] Length = 339 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 3/165 (1%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDK 239 + + K + RL L +K+ + ++ +L G+ I IID +N PMF Sbjct: 69 DSAESRKEEYRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKM 128 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQ 297 S+ P +L+ I +L IS+ GHTD P+ N NW LS DRA ++ + Sbjct: 129 GSAQVEPYMRDILRAIAPILNDIPNKISLSGHTDDLPYANGERGYSNWELSADRANASRR 188 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 L+ G+ E ++ ++ G A + NRRI ILV ++Q Sbjct: 189 ELLIGGLDEGKVLRVIGMASTMRLKEQAADDPVNRRISILVLNKQ 233 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 4/160 (2%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+++ + I +YF K +T+ +P + Sbjct: 1 MTAMMAFFLVMWLLSVSSPQELAQIAEYFRTPLKVALTSGDRSSSSSSPIPGGGDDP--T 58 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 D + K+ + + R + + S+ + + L ++G + Sbjct: 59 QQDGEVRKHIDSAESRKEEYRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQII 118 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + + K + + P ++ + A+ L D+ KIS Sbjct: 119 DSQNRPMFKMGSAQVEPYMRDILRAIA--PILNDIPNKIS 156 >gi|333003303|gb|EGK22849.1| chemotaxis protein motB [Shigella flexneri K-218] Length = 265 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 48 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRI 107 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 108 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 167 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 168 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 226 >gi|294635726|ref|ZP_06714192.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685] gi|291090938|gb|EFE23499.1| chemotaxis MotB protein [Edwardsiella tarda ATCC 23685] Length = 332 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 4/201 (1%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 R S+ + D + E F E+ + R KRL++ +K+ ++ Sbjct: 72 QGGQRSSDSFSPIPGGGDDVTQKSGEVQRFAADPDPEQRVEQMRLKRLRERLEKV--IIN 129 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + ++ G+ I IID +N PMF S+ P +L+ I +L Sbjct: 130 DPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSARVEPYMRDILRAIAPILNELPN 189 Query: 265 VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 IS+ GHTD P+ N NW LS DRA ++ + L+ G++ ++I ++ G A Sbjct: 190 KISLSGHTDDLPYANGERGYSNWELSADRANASRRELVIGGLAGNKILRVVGMADTMNLR 249 Query: 323 ASDPMNSANRRIDILVEDRQG 343 + NRRI ILV + Sbjct: 250 HLAGNAAVNRRISILVLTKAA 270 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 2/190 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 I++KKK + ++ G+WKI YADFMT +MAFFLVMW++ I +YF Sbjct: 5 KHPVILVKKKRSGHGQASHGGAWKIAYADFMTAMMAFFLVMWLLAIASPQELTRIAEYFR 64 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K + + D +P + S + D + + + R Sbjct: 65 TPLKVALQGGQRSSDSFSPIPGGGDDVTQKSGEVQRFAADPDPEQRVEQMRLKRLRERLE 124 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 +++ + + + ++G + + + + + + P ++ + A+ Sbjct: 125 KVIINDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSARVEPYMRDILRAIA--P 182 Query: 191 RLQDLAKKIS 200 L +L KIS Sbjct: 183 ILNELPNKIS 192 >gi|119775566|ref|YP_928306.1| flagellar motor protein MotB [Shewanella amazonensis SB2B] gi|119768066|gb|ABM00637.1| sodium-driven polar flagellar protein PomB [Shewanella amazonensis SB2B] Length = 312 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 113/327 (34%), Gaps = 36/327 (11%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P W +AD M++LM FF+++ + D K I Sbjct: 3 KAKCNCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSM---------- 52 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 K F QN E K I + ++ + E + + + Sbjct: 53 -KYAFGVQNKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPILDFQEGESE 111 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S G+ + + +S + + + + KK+ Sbjct: 112 SAGGVQQQQGSQRGGEASSTAQETAESTQSDSSSSQ--------------ELINQQVKKM 157 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + D + E+ I+I I R F S P V++ +GE+L Sbjct: 158 AEQLNEEIVDGA---IEIESLGQQIIIRI---REKGAFGSGSGFLQPRFRPVIRAVGELL 211 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 +I++ G+TD N NW LS RA S L+K G R+ K+ G Sbjct: 212 KDVPGIITVSGYTDDMQISNELYSSNWDLSSKRAVSVAHELVKVKGFDSSRM-KVVGMGS 270 Query: 318 HRLKIASD--PMNSANRRIDILVEDRQ 342 + + ++ + NRR++I +E + Sbjct: 271 NNPLVPNESAENRARNRRVEIAIEQGK 297 >gi|152995178|ref|YP_001340013.1| flagellar motor protein MotB [Marinomonas sp. MWYL1] gi|150836102|gb|ABR70078.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 330 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 120/320 (37%), Gaps = 39/320 (12%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 + L ++ +AD M++LM FF+++ D K + Sbjct: 9 CPECVEGLPAYMGTFADLMSLLMCFFVLLLSFAEMDVLKFKQLAGSL------------- 55 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 K+ + + +S+ + Q+ R E + Sbjct: 56 --------------KVAFGVQREVEADSIPMGTSVIAQEFSPGRPEPTPINEVKQKADST 101 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 +N+L + G K + + SK + K+ + + A+ I+S Sbjct: 102 PENTLEVICKPGDAELKE---QSNSGSPAPVTFVDKSKADLDKEKKIQETESNAQMIASV 158 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + V+ V ET I I I DQ + F+ S+ + I V+ I +VL Sbjct: 159 MREEVSKG---TVEIETQEQTITIRIKDQGS---FESGSAELNYDFIPVIDLIRDVLVGI 212 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 IS+ GHTD P + R NW+LS RA S + L +G + ++G+A R Sbjct: 213 QGTISVEGHTDNVPIASSRFRSNWQLSSARAISVAEELFSTGQLDQGRFAVTGYADTRPL 272 Query: 322 IASDP--MNSANRRIDILVE 339 + +D + NRR++I+++ Sbjct: 273 VPNDTPAHRATNRRVEIIIK 292 >gi|167576627|ref|ZP_02369501.1| Chemotaxis lafU protein [Burkholderia thailandensis TXDOH] Length = 311 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 76/338 (22%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N+E I ++ ++ G+WK+ +ADF LMA F+V+W++N T + +K + Sbjct: 4 NKEAGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G GIF+ QR Sbjct: 64 EI--AGHPFFDGGVGIFE---------------------------------------QRS 82 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + ++QQ E K ++ + L + + LA + Sbjct: 83 RKPVVAPFDAQQPERVKR-------------------RTPGAARERTIDSLQQRRALAAR 123 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L ++ ++ + D+ V+ + ++ + G MF++ S P+ Sbjct: 124 IMDEATRLG--MNGNVATAINDDGVRITIHDSDKQG------------MFERRSDALNPQ 169 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +L + VL T + I GHTDA+ + ++ +NW LS RA A Q+L G+ Sbjct: 170 FVRLLTALVPVLGTVTNKMVIVGHTDATQYADTSVFSNNWNLSSRRALRARQILADGGMD 229 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 R+ +ISG + +P + NRR+++L+ + Sbjct: 230 AQRMFQISGMGDSVPAVPDNPDHDMNRRVELLLLTSRA 267 >gi|218675467|ref|ZP_03525136.1| flagellar motor protein MotB [Rhizobium etli GR56] Length = 436 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 134/273 (49%), Gaps = 5/273 (1%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNK--IDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 T + G ++P + K + + + + + + + + Sbjct: 163 AADSGPATGADGGEAYRDPFDPDFWTKQVEVTTAGKTLPPGKSEQQPAENEATEVAKAED 222 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSE--KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 L+ Q+ +E + K K D +K+ +++ K + Sbjct: 223 MKPVPLATDQKPAKDAKETKGAAETKEAKADGKVPDEKKAEAQKDADHQKDADKSAAASE 282 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++KK L +I+ + G VA + +G+ G+L+SI DQ + MF+ S++P Sbjct: 283 QQKKEADALQAQIAQQIGG-VAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQ 341 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 E ++ +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E Sbjct: 342 EMVLAMERIGTILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDE 401 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RIS++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 402 KRISQVSGFADRRLKLPADPFNAANRRIEILVQ 434 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 8/200 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFGKNLMTAS-----KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 TK A+ YFNP + K + D + ++ + + + E + D + Sbjct: 61 TKAAVATYFNPIKLADEKPTEKGLKKPVDDAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120 Query: 116 GSTNQK---KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 ++ + + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRKKRL 192 F P +++ K L Sbjct: 181 PFDPDFWTKQVEVTTAGKTL 200 >gi|315617885|gb|EFU98483.1| chemotaxis protein motB [Escherichia coli 3431] Length = 265 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 48 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 107 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 108 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 167 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 168 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 226 >gi|327193053|gb|EGE59965.1| chemotaxis motility protein [Rhizobium etli CNPAF512] Length = 440 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 4/270 (1%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + D +P + Q ++ + S + + + Sbjct: 169 ATGADGGEAYRDPFDPDFWTKQVEVTTAGKTLPPGKSEEQATEGAATEVAKAEDTKPVPL 228 Query: 134 LSNSQQSEHCKNSLTRDSEK----GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ + ++ K S GK EK E+N + +R+ Sbjct: 229 ATDQKPAKDAKESKETKGAPETKGGKATDGKAPDEKKAEAEKNADHQKDADNSAAETERQ 288 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K+ D ++ + G VA + +G+ + G+L+SI DQ + MF+ S++P E + Sbjct: 289 KKEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQEMV 348 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RI Sbjct: 349 LAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDEKRI 408 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVE 339 S++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 409 SQVSGFADRRLKLPADPFNAANRRIEILVQ 438 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114 TK A+ YFNP K K D E + S+ K D + + D Sbjct: 61 TKAAVATYFNPIKLADEKPTEKGLKKPVDHAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120 Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 S +Q + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRKKRL 192 F P +++ K L Sbjct: 181 PFDPDFWTKQVEVTTAGKTL 200 >gi|218548503|ref|YP_002382294.1| flagellar motor protein MotB [Escherichia fergusonii ATCC 35469] gi|218356044|emb|CAQ88660.1| protein that enables flagellar motor rotation [Escherichia fergusonii ATCC 35469] gi|324113675|gb|EGC07650.1| OmpA family protein [Escherichia fergusonii B253] gi|325496923|gb|EGC94782.1| flagellar motor protein MotB [Escherichia fergusonii ECD227] Length = 304 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 3/178 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ S E++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVNRQPSIEELKKHMEQSRLNRLRGDLDQLIESDPKLRALRPHLKIDMVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 152 QIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRISLAGHTDDYPYANGERGYSN 211 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 W LS DRA ++ + LM G+ E ++ ++ G A ++ NRRI +LV ++Q Sbjct: 212 WELSADRANASRRELMVGGLEEGKLLRVVGMAATMRLSDRGGNDAINRRISLLVLNKQ 269 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 73/178 (41%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + I++K++ + GSWKI YADFMT +MAFFLVMW+I+ + I +YF Sbjct: 4 RDQPIIVVKRRKPKNHGGAGHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF 63 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +T I + Q+P + + + + +LK + R + Sbjct: 64 RTPLATAITGGDRISNSQSPIPGGGDDYTQQQGEVNRQPSIEELKKHMEQSRLNRLRGDL 123 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + S+ + + ++G + + + K + + P ++ + A+ Sbjct: 124 DQLIESDPKLRALRPHLKIDMVQEGLRIQIIDSQNRPMFKTGSADVEPYMRDILRAIA 181 >gi|157371226|ref|YP_001479215.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568] gi|157322990|gb|ABV42087.1| OmpA/MotB domain protein [Serratia proteamaculans 568] Length = 321 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 3/180 (1%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + L + + + RL L +K+ + ++ +L G+ Sbjct: 86 GDDPTQQDGLVKRQIDTLEKRDEELRLNKLREKLDELIESDPRLKALRPHLLINMMDEGL 145 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282 I IID +N PMF S+ +L+ I +L IS+ GHTD P+ Sbjct: 146 RIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDIPYATGERGY 205 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS DRA ++ + L+ G+SE ++ ++ G A ++ NRRI +LV ++Q Sbjct: 206 SNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITVLVLNKQ 265 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 6/192 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + +++ +K ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 2 KQNHPVVLVRKRKSHQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K +T+ E +P D + + + K +D + + + E Sbjct: 62 RTPLKVALTSGDKSSSESSPIPGGGD---DPTQQDGLVKRQIDTLEKRDEELRLNKLREK 118 Query: 130 NIFYLSNSQQSEHCKNS-LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + + + L ++G + + + K + + ++ + A+ Sbjct: 119 LDELIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIA- 177 Query: 189 KKRLQDLAKKIS 200 L DL KIS Sbjct: 178 -PILNDLPNKIS 188 >gi|332141875|ref|YP_004427613.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep ecotype'] gi|327551897|gb|AEA98615.1| flagellar motor protein MotB [Alteromonas macleodii str. 'Deep ecotype'] Length = 309 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 121/325 (37%), Gaps = 39/325 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ P L +W +AD M++LM FF+++ + D K I Sbjct: 1 MAEEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------- 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 K F QN E K I D + Q++ + + + + + Sbjct: 54 ----KFAFGVQNKIEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAG 109 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++ S + + G+ +T S + + + ++ +L Sbjct: 110 NEDSAGGRQKQRGEQRGGQSQQTATQSSSSAEQSTD----------------QSQMAELM 153 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KK++ L + D V E+ + I I R F S+ P+ VL+KIG Sbjct: 154 KKVAQQLEKQILDG---SVEMESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRKIG 207 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 +LA I I GH+D N + R NW LS RA + + + + G E R+ + G Sbjct: 208 TLLADVPGEIEISGHSDGQHIANELYRSNWDLSSQRAVAVAEAMRTAPGFDESRM-SVVG 266 Query: 315 FAHHRLKIASDPM---NSANRRIDI 336 A + + + NRR++I Sbjct: 267 KADTAPIVENATTSADRAKNRRVEI 291 >gi|85711188|ref|ZP_01042248.1| flagellar motor protein [Idiomarina baltica OS145] gi|85695101|gb|EAQ33039.1| flagellar motor protein [Idiomarina baltica OS145] Length = 309 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 120/328 (36%), Gaps = 39/328 (11%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + P L W +AD MT+LM FF+++ + D K I Sbjct: 7 QEECRCPPPGLPMWMATFADLMTLLMCFFVLLLAFSEMDVLKFKQIAGSM---------- 56 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 K QN E K I + + T Q++ + + + + Sbjct: 57 -KYALGVQNKIEVKDIPKGTSIIAQEFRPGRPEPTPIETIQQQTVEMTQQTLEFQDGESD 115 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 K E+G S + +K+++ E+ ++++++L ++I Sbjct: 116 FAGGKQV-----ERGGQQADSEEDKKAVDGSESDP------------AVEQQVKELMERI 158 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 LS + + E I+I I + F + S+ P+ V++++ + L Sbjct: 159 REQLSDNIK---AGSLELEQLGQQIIIRI---KENGSFPEGSAFLQPQFKPVIREVAQAL 212 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 I+I GHTD P + W LS RA + + + G + R+ G+A Sbjct: 213 KDIPGEITISGHTDNQPLVSEMYTSKWDLSAKRAVAVAEEMTSVDGFDQSRLV-TMGYAD 271 Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343 + + ++ + NRR+DI + + Sbjct: 272 TKPIVPNNSTSNRALNRRVDIAIMQGKA 299 >gi|270262419|ref|ZP_06190690.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13] gi|270043103|gb|EFA16196.1| hypothetical protein SOD_c00360 [Serratia odorifera 4Rx13] Length = 321 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 3/180 (1%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + L + + + RL L +K+ + ++ +L G+ Sbjct: 86 GDDPTQKDGLVKKQIDTLEKRDEELRLNKLREKLDELIESDPRLKALRPHLLINMMDEGL 145 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282 I IID +N PMF S+ +L+ I +L IS+ GHTD P+ Sbjct: 146 RIQIIDSQNRPMFKTGSAQVESYMRDILRAIAPILNDLPNKISLSGHTDDIPYATGERGY 205 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS DRA ++ + L+ G+SE ++ ++ G A ++ NRRI +LV ++Q Sbjct: 206 SNWELSADRANASRRELIAGGLSEGKVLRVVGMAATMSLKQHGADDAINRRITVLVLNKQ 265 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 4/191 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + +++ +K ++ GSWKI YADFMT +MAFFLVMW++ I +YF Sbjct: 2 KQNHPVVLVRKRKSHQAGHHGGSWKIAYADFMTAMMAFFLVMWLLAIASPQELTQIAEYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 K +T E +P + D + K L+ + R + Sbjct: 62 RTPLKVALTTGDKSSSESSPIPGGGDDP--TQKDGLVKKQIDTLEKRDEELRLNKLREKL 119 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S+ + + L ++G + + + K + + ++ + A+ Sbjct: 120 DELIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKTGSAQVESYMRDILRAIA-- 177 Query: 190 KRLQDLAKKIS 200 L DL KIS Sbjct: 178 PILNDLPNKIS 188 >gi|170741408|ref|YP_001770063.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168195682|gb|ACA17629.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 441 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 1/273 (0%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+P + + + P ++ + + + + + G K+ L Sbjct: 168 FDPLYWQVAPLPQARSETPGPINTVAKTPSRVDARAALPNAAREGRTGLDLVPKEIADLL 227 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ + ++ E + + + P+ K Sbjct: 228 KPPGAKPERTEAKPAEAKPAEAKPAEAKPAEAKPAEAKPAEVKPAAVAPV-DAKAAEPGE 286 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L +L ++ + L V T G LISI D+ N MF+ S+ P + Sbjct: 287 NAALAELKAEVLKAVQPLATGAPAPKVEVRRTGEGTLISITDELNFSMFNVGSAEPQAKV 346 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + L++I +VL+ I +RGHTDA PF++ + DNWRLS RA A +L++ GV+E R Sbjct: 347 VKALERIAKVLSSRPGQIVLRGHTDARPFKSESYDNWRLSSARAQMAAYMLIRGGVAERR 406 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 I +I G A + + SDPM + NRRI+IL+ ++ Sbjct: 407 IVRIEGHADRQPRNPSDPMAAENRRIEILLREK 439 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 1/182 (0%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + III ++ D+ ++ +WKI ADFMT +M+ FLV+W++N+T +TK AI YF Sbjct: 3 DEAHEIIIVRRRGDDEDGHHSAAWKIALADFMTAMMSLFLVLWLVNSTSKETKSAIADYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP M+ KG+ D N P S + K GS ++ K+ + Sbjct: 63 NPIRLAEMSPEKKGLRDPTNAPSDSGEPGKTGESKGGEGKGKDSSTSGSASRAKEAALFQ 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + L+ + S + + + F P + L R Sbjct: 123 DPYAVLAKLAAEADAERPGDASSADAVTVQEGKPGVTGGEAARDPFDPLYWQVAPLPQAR 182 Query: 189 KK 190 + Sbjct: 183 SE 184 >gi|121997035|ref|YP_001001822.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1] gi|121588440|gb|ABM61020.1| OmpA/MotB domain protein [Halorhodospira halophila SL1] Length = 346 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 1/155 (0%) Query: 190 KRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + +Q+LA++ L +L E T G+ I ++D PMF+ S+ P T Sbjct: 104 EEMQELAEQFQDAVLDDPDLAEYADQILLEITDDGLRIQLVDHDGRPMFELGSADPREHT 163 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ + VL +S+ GHTDA PF DNW LS DRA +A L+ G+ +R Sbjct: 164 EEILRALARVLEDVPNPVSLSGHTDARPFARDDYDNWSLSTDRANAARLTLLDGGLPAER 223 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 I ++ G+A DP NRRI +++ R+ Sbjct: 224 IGQVVGYADTVPFDPDDPRADINRRISVVLLSREA 258 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 47/80 (58%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +EN ++ KKVA ++ GSWKI +ADFMT + A FLV+W++ A DDD ++ I QY Sbjct: 3 EENKTRPVVIKKVAKHGDDHHGGSWKIAFADFMTAMFAIFLVLWLLLALDDDQRQGIGQY 62 Query: 69 FNPFGKNLMTASKGIFDEQN 88 F AS+ I D + Sbjct: 63 FRDPQAAHPPASRDIIDFEG 82 >gi|239996641|ref|ZP_04717165.1| flagellar motor protein MotB [Alteromonas macleodii ATCC 27126] Length = 309 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 124/325 (38%), Gaps = 39/325 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ P L +W +AD M++LM FF+++ + D K I Sbjct: 1 MAEEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------- 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 K F QN E K I D + Q++ + + + + + Sbjct: 54 ----KFAFGVQNKIEVKDIPKGTSVIAMEFRPGKPDPTPIESIQQQTNEMTQQMLEFQAG 109 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++ S + + E+ + T E S + E++ + ++ +L Sbjct: 110 NEDSAGGRQ--KQRGEQRGGQSQQTATESSSSAEQST--------------DQSQMAELM 153 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KK++ L + D V E+ + I I R F S+ P+ VL+KIG Sbjct: 154 KKVAQQLEKQILDG---SVEMESLGQQLTIRI---RENGSFSAGSAFLQPQFQPVLRKIG 207 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 +LA I I GH+D N + R NW LS RA + + + + G E R+ + G Sbjct: 208 TLLADVPGEIEISGHSDGQHIANELYRSNWDLSAQRAVAVAEAMRTAPGFDESRM-SVVG 266 Query: 315 FAHHRLKIASDP---MNSANRRIDI 336 A + + + NRR++I Sbjct: 267 KADTDPIVENATSPSDRAQNRRVEI 291 >gi|213054486|gb|ACJ39422.1| PomB2 [Aeromonas hydrophila] Length = 297 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 120/335 (35%), Gaps = 65/335 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73 P L + +AD M++LM FF+++ D K I N Sbjct: 2 AKCKCPPPGLPGYMGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMEKAFGVQNILE 61 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + + + P R ID + + +T+ +D + G +Q + + E+ + Sbjct: 62 VKDIPKGTSVIALEFRPGRPEPTPIDTIMQQTMDMTQTELDFQPGDADQAGGHDKSEDKL 121 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 Q+ A K++++ Sbjct: 122 VGGDTRQE---------------------------------------------AQKKQEQ 136 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 DLAK+++ + + D ++ E I+I I R F S+ P+ V Sbjct: 137 SNDLAKELAEQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPV 190 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309 ++K+ +L I+I GHTD + + + NW LS RA + ++K G R+ Sbjct: 191 VRKVATLLKDVPGEITISGHTDDVATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRL 250 Query: 310 SKISGFAHHRLKIAS-DPMNSA-NRRIDILVEDRQ 342 + G A + + + P N NRR++I + + Sbjct: 251 V-VQGMADSQPLVPNTTPENRRMNRRVEISIMQGK 284 >gi|190890377|ref|YP_001976919.1| chemotaxis motility protein [Rhizobium etli CIAT 652] gi|190695656|gb|ACE89741.1| chemotaxis motility protein [Rhizobium etli CIAT 652] Length = 440 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 4/270 (1%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + D +P + Q ++ + S + + + Sbjct: 169 ATGADGGEAYRDPFDPDFWTKQVEVTTAGKALPPGKSAEQATEGAATEVAKAEDMKPVPL 228 Query: 134 LSNSQQSEHCKNSLTRDSEK----GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ + ++ K S GK EK + E+N + + +R+ Sbjct: 229 ATDQKPAKDAKESKETKGAPETKGGKTTDGKAPDEKKVEAEKNADHQKDADKSADETERQ 288 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K D ++ + G VA + +G+ + G+L+SI DQ + MF+ S++P E + Sbjct: 289 KTEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDDSMFNIGSAVPRQEMV 348 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RI Sbjct: 349 LAMERIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLDEKRI 408 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVE 339 S++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 409 SQVSGFADRRLKLPADPFNAANRRIEILVQ 438 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114 TK A+ YFNP K K D E + S+ K D + + D Sbjct: 61 TKAAVATYFNPIKLADEKPTEKGLKKPVDHAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120 Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 S +Q + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRKKRL 192 F P +++ K L Sbjct: 181 PFDPDFWTKQVEVTTAGKAL 200 >gi|115524024|ref|YP_780935.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115517971|gb|ABJ05955.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 272 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 63/322 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + W + +AD M +L+AFF+++ + D D K + Sbjct: 2 GKKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDKDKLKVVAG------------ 49 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S+ G + LE + +S + Sbjct: 50 ------------------------------SMRDAFGVQPDSRYAGVLEQDGVPISGKLK 79 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + ++ + D + + +E + + ++ LQD+ + Sbjct: 80 NASLVSTNQASNTPSPDEGDNDSAKTKAEREFA----------LASASLRQALQDMPE-- 127 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 I K V+FE T+ G+ + I DQ MF + S +P T +++Q++ L Sbjct: 128 --------LTEISKNVIFEETKDGLNMEITDQDGRSMFAEGSKVPYDRTRLLVQRLAAPL 179 Query: 260 AHSTEVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + ISI GHT A + + LS DRA + Q+L + GV +I +SG A Sbjct: 180 RATPLRISIAGHTSAGVVIGRSDYNAFDLSSDRANAVRQILEREGVPTSQIYAVSGRADS 239 Query: 319 RLKIASDPMNSANRRIDILVED 340 + D SANRR+ I + Sbjct: 240 QPLFPDDATLSANRRVTITLMR 261 >gi|91211113|ref|YP_541099.1| flagellar motor protein MotB [Escherichia coli UTI89] gi|110642005|ref|YP_669735.1| flagellar motor protein MotB [Escherichia coli 536] gi|117624039|ref|YP_852952.1| flagellar motor protein MotB [Escherichia coli APEC O1] gi|191172996|ref|ZP_03034530.1| chemotaxis protein MotB [Escherichia coli F11] gi|215487100|ref|YP_002329531.1| flagellar motor protein MotB [Escherichia coli O127:H6 str. E2348/69] gi|218558752|ref|YP_002391665.1| flagellar motor protein MotB [Escherichia coli S88] gi|218689885|ref|YP_002398097.1| flagellar motor protein MotB [Escherichia coli ED1a] gi|237705847|ref|ZP_04536328.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA] gi|300935867|ref|ZP_07150825.1| chemotaxis protein MotB [Escherichia coli MS 21-1] gi|300982219|ref|ZP_07175931.1| chemotaxis protein MotB [Escherichia coli MS 200-1] gi|312967092|ref|ZP_07781310.1| chemotaxis protein motB [Escherichia coli 2362-75] gi|331657937|ref|ZP_08358899.1| chemotaxis protein MotB [Escherichia coli TA206] gi|91072687|gb|ABE07568.1| chemotaxis MotB protein [Escherichia coli UTI89] gi|110343597|gb|ABG69834.1| chemotaxis MotB protein [Escherichia coli 536] gi|115513163|gb|ABJ01238.1| chemotaxis MotB protein [Escherichia coli APEC O1] gi|190906707|gb|EDV66312.1| chemotaxis protein MotB [Escherichia coli F11] gi|215265172|emb|CAS09560.1| protein that enables flagellar motor rotation [Escherichia coli O127:H6 str. E2348/69] gi|218365521|emb|CAR03248.1| protein that enables flagellar motor rotation [Escherichia coli S88] gi|218427449|emb|CAV17777.1| protein that enables flagellar motor rotation [Escherichia coli ED1a] gi|222033636|emb|CAP76377.1| chemotaxis protein motB [Escherichia coli LF82] gi|226900604|gb|EEH86863.1| flagellar motor protein MotB [Escherichia sp. 3_2_53FAA] gi|300307289|gb|EFJ61809.1| chemotaxis protein MotB [Escherichia coli MS 200-1] gi|300458979|gb|EFK22472.1| chemotaxis protein MotB [Escherichia coli MS 21-1] gi|307626628|gb|ADN70932.1| flagellar motor protein MotB [Escherichia coli UM146] gi|312288556|gb|EFR16458.1| chemotaxis protein motB [Escherichia coli 2362-75] gi|312946487|gb|ADR27314.1| flagellar motor protein MotB [Escherichia coli O83:H1 str. NRG 857C] gi|315286597|gb|EFU46030.1| chemotaxis protein MotB [Escherichia coli MS 110-3] gi|315296507|gb|EFU55804.1| chemotaxis protein MotB [Escherichia coli MS 16-3] gi|320194396|gb|EFW69027.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327] gi|323186771|gb|EFZ72091.1| chemotaxis protein motB [Escherichia coli RN587/1] gi|323952390|gb|EGB48263.1| OmpA family protein [Escherichia coli H252] gi|323956291|gb|EGB52034.1| OmpA family protein [Escherichia coli H263] gi|324007255|gb|EGB76474.1| chemotaxis protein MotB [Escherichia coli MS 57-2] gi|324013535|gb|EGB82754.1| chemotaxis protein MotB [Escherichia coli MS 60-1] gi|331056185|gb|EGI28194.1| chemotaxis protein MotB [Escherichia coli TA206] Length = 308 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV ++ Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269 >gi|51597618|ref|YP_071809.1| hypothetical protein YPTB3318 [Yersinia pseudotuberculosis IP 32953] gi|51590900|emb|CAH22556.1| Putative chemotaxis membrane protein [Yersinia pseudotuberculosis IP 32953] Length = 264 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 63/301 (20%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 +MA F+V+WI+ ++ ++ I N K IF +Q+ S++K Sbjct: 1 MMALFMVLWIVGVVSEEERQEIVAQLN---------GKTIFAQQSFISIPSKSK------ 45 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 + S + K + + Sbjct: 46 ------------------------------SGGGKLSNSIDGNEQAKETKSNLAIEVPEP 75 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 EKS+ + + K + +++L++ I S N + E G Sbjct: 76 EKSLEE--------------VVDKSRHEMEELSRIIMQITSAY---NAQSNLQMEVVPQG 118 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IAR 282 + I I D + MF +SS++ P +L ++ I I GHTDAS +R+ + Sbjct: 119 LRILIQDDQQRDMFQRSSAVLTPFFSRLLGELAPAFNEMDNKIIITGHTDASRYRDQLLY 178 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 +NW LS +RA A++ L+ G+ E R+ +I+ A L +DP+ + NRRI+I+V + Sbjct: 179 NNWNLSGERALMAHKALVNGGLDEGRVLQINTMADQMLLDPTDPLAAKNRRIEIMVLTKT 238 Query: 343 G 343 Sbjct: 239 A 239 >gi|206890444|ref|YP_002248653.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742382|gb|ACI21439.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 252 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 8/190 (4%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L + + + + + + K+ + K I L + ++ Sbjct: 68 LESGQSFMQQSSAIQQEVKTSVQESTPSETRAKRFEEQFKKTIEEKL-----KELKDHIM 122 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 +T G+ I I+D PMF SS+ P + +L+ + E + +++ GHTDA P Sbjct: 123 IDTVEGGVRIQIVDLEGEPMFPLSSAEPTEKAREILKVVAENIKDEPARVAVEGHTDAVP 182 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 FR NW LS RA SA + + + GV+ ++I+++ G+A I DP + NRRI I Sbjct: 183 FRGGKTTNWELSTARASSARREIERYGVAPEKIARVVGYADTLPLIKDDPKDPRNRRISI 242 Query: 337 LVE---DRQG 343 ++ ++QG Sbjct: 243 ILMFEKEKQG 252 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 34/254 (13%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + II KK+ ++ GSWK+ YADF T +MAFFL++W+++ D + AI YF Sbjct: 3 DKSKTTIIVKKIKKGHEAHHGGSWKVAYADFTTAMMAFFLLLWLLSMLDPVKRAAIADYF 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE- 128 F NL+ + + + + ++ + + S + + T ++K + + Sbjct: 63 RYF--NLLESGQSFMQQSSAIQQEVKTSVQESTPSETRAKRFEEQFKKTIEEKLKELKDH 120 Query: 129 -------------------NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 +F LS+++ +E + L +E KD +E + Sbjct: 121 IMIDTVEGGVRIQIVDLEGEPMFPLSSAEPTEKAREILKVVAENIKDEPARVAVEGHTDA 180 Query: 170 -----EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + + A + +R +KI+ + ++K Sbjct: 181 VPFRGGKTTNWELSTARASSARREIERYGVAPEKIARVVGYADTLPLIKD--DPKDPRNR 238 Query: 225 LISIIDQRNTPMFD 238 ISII MF+ Sbjct: 239 RISII-----LMFE 247 >gi|114320660|ref|YP_742343.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227054|gb|ABI56853.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 285 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 2/195 (1%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 +E + + + P + A + ++DL ++ L Sbjct: 76 AESAPSMLDLEGGSPTPLELGETPTPMDQQRDEGAWISEGAMRDLLSELERALEEKEELA 135 Query: 211 IVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + VL + T G+ I ++D N PMFD S+ +L + VL + I Sbjct: 136 EFRDQVLMDMTPDGLRIQLVDAENRPMFDLGSARLRSYAAEILSGLTGVLERVPNALRIS 195 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTDA PF NW LS DRA +A + L SG++ R++++ G A + +PM Sbjct: 196 GHTDARPFVGRRDYTNWELSTDRANAARRTLTASGIAPYRVAQVVGVAETQPLDPDNPMA 255 Query: 329 SANRRIDILVEDRQG 343 NRRI I++ + Sbjct: 256 PVNRRISIILLTPEA 270 >gi|222147584|ref|YP_002548541.1| flagellar motor protein MotB [Agrobacterium vitis S4] gi|221734572|gb|ACM35535.1| flagellar motor protein [Agrobacterium vitis S4] Length = 444 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 2/253 (0%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK-QYQRLENNIFYLSNSQQSEHCKNSLTR 149 + + DE T K QK Q + Q S Sbjct: 192 QTAQGKPGKAKPDEQQTVAEAAAKPDPFAQKPVDQQASAAAAAAAPDGAQGTPPSKSQPE 251 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + + + + + + + + + ++ L ++I+S + G VA Sbjct: 252 AKPQVEIDGQQVAIAVPKARPDPKQVAREEQNASADSDQTQQADQLKQQIASEIGG-VAG 310 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + +G++ + G+LI++ DQ PMFD S++P E ++ ++KIG++LA + IR Sbjct: 311 KLAEGLIVQPAEGGLLITLTDQSQAPMFDVGSAVPRKEMVLAMEKIGKLLAERQGAVVIR 370 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA ++ DNW LS+ RA+SAY +L++ G++++RI+++SGFA RL DP+ + Sbjct: 371 GHTDARQYKGPDNDNWGLSMSRAHSAYYMLVRGGLAQNRITQVSGFADRRLLKPEDPLAA 430 Query: 330 ANRRIDILVEDRQ 342 ANRRI+ILV+ Q Sbjct: 431 ANRRIEILVQGDQ 443 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 8/197 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ I+IK+ D + G+WKI YADFMT +MAFFLVMW++NA ++ Sbjct: 1 MSDAENHHHGKNEIIVIKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEK 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFDEQNPPERSSQNKIDLSIDE----HITKNSVD 112 T ++ YFNP K K D+ E ++KI + T + Sbjct: 61 TTASVASYFNPIKLADEKPTEKGVKKPVDQAEGEESKERSKIKAEEETLGKAAATGEDMT 120 Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 G + EN L+ Q + +++ E G + + Sbjct: 121 STSGDKPVYSEADLFENPYSVLAEIAQEVGQQANVSAKGEGGASESGPSTGASGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRK 189 F P +++ + K Sbjct: 181 PFDPDFWSQQMQTAQGK 197 >gi|26248156|ref|NP_754196.1| flagellar motor protein MotB [Escherichia coli CFT073] gi|227885682|ref|ZP_04003487.1| flagellar motor protein MotB [Escherichia coli 83972] gi|300994031|ref|ZP_07180650.1| chemotaxis protein MotB [Escherichia coli MS 45-1] gi|301050754|ref|ZP_07197612.1| chemotaxis protein MotB [Escherichia coli MS 185-1] gi|26108560|gb|AAN80763.1|AE016762_16 Chemotaxis motB protein [Escherichia coli CFT073] gi|227837255|gb|EEJ47721.1| flagellar motor protein MotB [Escherichia coli 83972] gi|300297571|gb|EFJ53956.1| chemotaxis protein MotB [Escherichia coli MS 185-1] gi|300406399|gb|EFJ89937.1| chemotaxis protein MotB [Escherichia coli MS 45-1] gi|307553906|gb|ADN46681.1| flagellar motor rotation protein [Escherichia coli ABU 83972] gi|315290318|gb|EFU49694.1| chemotaxis protein MotB [Escherichia coli MS 153-1] Length = 308 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV ++ Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269 >gi|294492517|gb|ADE91273.1| chemotaxis protein MotB [Escherichia coli IHE3034] Length = 308 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV ++ Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269 >gi|118589971|ref|ZP_01547375.1| flagellar motor protein MotB [Stappia aggregata IAM 12614] gi|118437468|gb|EAV44105.1| flagellar motor protein MotB [Stappia aggregata IAM 12614] Length = 500 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 3/270 (1%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 A G F P + +Q++ ++ K G +K + Sbjct: 228 APSSHAMAGDFAYAAPFDEGTQSETGIAQQNGNAAPGKGAKKGDYMAEKAGTTSFEFVGT 287 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + E + K + + +S + + + + Sbjct: 288 GTLPDNGETTDPVVAHVLGKSLEQSSGEVVFESETETVVGTGAGEGEGTYEEDFTESSAE 347 Query: 194 DLAKKISSTL---SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L ++S L G V + + G LIS+ D +N MF S+ P PE + Sbjct: 348 VLVARLSEVLAQTEGTVLEETASQITVTREGEGALISLTDDQNFGMFAIGSAEPRPELVK 407 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L++IG+++A + I I+GHTDA PFR+ DNWRLS RA+ A +L + GV +DR + Sbjct: 408 LLERIGKIVADTPGQIVIKGHTDARPFRSKTYDNWRLSSARAHMALYMLSRGGVGKDRFN 467 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ G+A LK+ SDP ++NRRI+I + + Sbjct: 468 RVEGYADKDLKVPSDPFAASNRRIEIYLLE 497 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 ++ +I+++K + +D G WKI YADFMT LMAFFLVMW+IN TDD ++ + QYFNP Sbjct: 7 NEIVIVRRKNSWEDDQTPHGVWKIAYADFMTALMAFFLVMWLINVTDDSVRRGVAQYFNP 66 Query: 72 FG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + KG+ D + E + + + VD + + +LE Sbjct: 67 VKLASTAPNRKGLNDPEINGETNEAGTKLFTGKLGGSDAPVDQDENFGDGLDEGHKLEEV 126 Query: 131 IFYLSNSQQSEHCK 144 I + Sbjct: 127 IETPEMGGAPASGQ 140 >gi|116250495|ref|YP_766333.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. viciae 3841] gi|115255143|emb|CAK06217.1| putative motility protein [Rhizobium leguminosarum bv. viciae 3841] Length = 443 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 5/275 (1%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + D +P + Q ++ + S + + S + I Sbjct: 169 ATGADGGEAYRDPFDPDFWTKQVEVTTAGKPLPPGKSDEQAVESETTEIAKLEDAKPIPL 228 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCK-----STDLEKSINKEENYFLPPLSKEKILAMKR 188 ++ + ++ K + G K S + +K+ +++ K ++ Sbjct: 229 TTDQKAAQETKETKETKGAVGAKDGKTPGGRSPEDKKAEAQKDADHQKDADKSAAETEQQ 288 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +K+ + + + G VA + +G+ + G+L+SI DQ + MF+ S++P E Sbjct: 289 QKKEAEQLQAQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEM 348 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ ++KIG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E R Sbjct: 349 VLAMEKIGAILKERGGAVAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKR 408 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 IS++SGFA RLK+ SDP N+ NRRI+ILV+ QG Sbjct: 409 ISQVSGFADRRLKLPSDPFNATNRRIEILVQADQG 443 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGKNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114 TK ++ YFNP K K D E + S+ K + D + D Sbjct: 61 TKASVATYFNPIKLSDEKPTEKGLKKPVDNAEGEEKQEKSKQKEEDPNDGKAAADGDDQT 120 Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 S +Q + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRKKRL 192 F P +++ K L Sbjct: 181 PFDPDFWTKQVEVTTAGKPL 200 >gi|293410200|ref|ZP_06653776.1| motB [Escherichia coli B354] gi|291470668|gb|EFF13152.1| motB [Escherichia coli B354] Length = 241 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 24 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 83 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 84 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSN 143 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 144 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 202 >gi|261212057|ref|ZP_05926343.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341] gi|260838665|gb|EEX65316.1| Flagellar motor rotation protein MotB [Vibrio sp. RC341] Length = 304 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 120/320 (37%), Gaps = 49/320 (15%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFD 85 W +AD M++LM FF+++ + D K I N + I Sbjct: 2 WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 61 Query: 86 EQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 ++ P R ID+ + + IT+ +++ + G +++ QR + +++ S Sbjct: 62 QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLTGGQSAETSVQE 121 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + ++ A ++++ +A+ I L Sbjct: 122 NQNTQSE-----------------------------MQQQQAQAMSEQMETVAESIKKAL 152 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 S + ++ E I I I R F + S+ P+ ++++I +++ Sbjct: 153 SREIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIP 206 Query: 264 EVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 + + GHTD + R NW LS RA S Q + K G R+ ++ G A + Sbjct: 207 GKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHQRL-QVRGMADTQPL 265 Query: 322 IASDPMNSA--NRRIDILVE 339 +D NRR++I + Sbjct: 266 GPNDTEAQRTINRRVEISIL 285 >gi|262274767|ref|ZP_06052578.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] gi|262221330|gb|EEY72644.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] Length = 309 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 126/334 (37%), Gaps = 60/334 (17%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 P L +W +AD M++LM FF+++ + D K I N Sbjct: 5 CKCPPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNLLEVK 64 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFY 133 + + ++ P R I++ + + I T+ ++D + G +++ QR Sbjct: 65 DIPKGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFQEGESDRAGGAQR------- 117 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + S E S+ + E + +++ Sbjct: 118 ------------------DSAELEGGSAASEASMQEME---------------QDTEQMS 144 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +A+ + L V + V+ ++I I R F S+ P+ +++ Sbjct: 145 SVAQMVVQALEREVEEGAVEVENL---GQQLIIRI---RENGAFPAGSAFLQPKFRPLVR 198 Query: 254 KIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 +I +++ ++ + GHTD SP + R NW LS RA S Q + K G R+ + Sbjct: 199 QIADLVKDVPGIVRVSGHTDDSPLDSELYRSNWDLSAQRAVSVAQEMEKVEGFDPMRM-R 257 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + G A ++ +D + NRR++I + + Sbjct: 258 VEGLAGSSPRVPNDTPENRAQNRRVEIAIMQGKA 291 >gi|218699541|ref|YP_002407170.1| flagellar motor protein MotB [Escherichia coli IAI39] gi|218369527|emb|CAR17296.1| protein that enables flagellar motor rotation [Escherichia coli IAI39] Length = 308 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 + + + E++ + RL+ L + + ++ + + + G+ I Sbjct: 91 TQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 150 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N PMF S+ P +L+ I VL IS+ GHTD P+ + N Sbjct: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNCISLSGHTDDFPYASGEKGYSN 210 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + LM G++ ++ ++ G A P ++ NRRI +LV ++ Sbjct: 211 WELSADRANASRRELMVGGLNGGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKHA 269 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 2/181 (1%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + + N +LK + + R Sbjct: 60 EYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLR 119 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + S+ + + ++G + + + + + + P ++ + A+ Sbjct: 120 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAI 179 Query: 187 K 187 Sbjct: 180 A 180 >gi|126443721|ref|YP_001061208.1| chemotaxis LafU protein [Burkholderia pseudomallei 668] gi|126223212|gb|ABN86717.1| chemotaxis LafU protein [Burkholderia pseudomallei 668] Length = 311 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 76/338 (22%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N+E+ I ++ ++ G+WK+ +ADF LMA F+V+W++N T + +K + Sbjct: 4 NKESGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G+ GIF+ QR Sbjct: 64 EI--AGRPFFDGGVGIFE---------------------------------------QRS 82 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + ++QQ + + ++ + L + + LA + Sbjct: 83 RKPVVAPFDAQQPDRMRR-------------------RTSGAARERTIDSLQQRRALAAR 123 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L + ++ + D+ V+ + ++ + G MF++ S P Sbjct: 124 IMDEASRLG--MDGNVATAINDDGVRITIHDSDKQG------------MFERRSDALNPP 169 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 I +L + VL T + I GHTDA+ + ++ +NW LS RA A QVL G+ Sbjct: 170 FIRLLTALVPVLGTVTNKMVIVGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMD 229 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 R+ +ISG + +P + NRR+++L+ + Sbjct: 230 AQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 267 >gi|134280878|ref|ZP_01767588.1| chemotaxis LafU protein [Burkholderia pseudomallei 305] gi|254182925|ref|ZP_04889518.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655] gi|254299720|ref|ZP_04967169.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e] gi|125657184|gb|ABN48672.1| chemotaxis LafU protein [Burkholderia pseudomallei] gi|134247900|gb|EBA47984.1| chemotaxis LafU protein [Burkholderia pseudomallei 305] gi|157809631|gb|EDO86801.1| lateral flagellar motor protein B [Burkholderia pseudomallei 406e] gi|184213459|gb|EDU10502.1| lateral flagellar motor protein B [Burkholderia pseudomallei 1655] Length = 311 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 76/338 (22%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 N+E+ I ++ ++ G+WK+ +ADF LMA F+V+W++N T + +K + Sbjct: 4 NKESGHGPTIIRRAHKRHEEHSGGAWKVAFADFTLALMALFMVLWVMNVTPEKERKQVAA 63 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 G+ GIF+ QR Sbjct: 64 EI--AGRPFFDGGVGIFE---------------------------------------QRS 82 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + ++QQ + + ++ + L + + LA + Sbjct: 83 RKPVVAPFDAQQPDRMRR-------------------RTSGAARERTIDSLQQRRALAAR 123 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L + ++ + D+ V+ + ++ + G MF++ S P Sbjct: 124 IMDEASRLG--MDGNVATAINDDGVRITIHDSDKQG------------MFERRSDALNPP 169 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 I +L + VL T + I GHTDA+ + ++ +NW LS RA A QVL G+ Sbjct: 170 FIRLLTALVPVLGTVTNKMVIVGHTDATQYADASVFSNNWNLSSRRALRARQVLADGGMD 229 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 R+ +ISG + +P + NRR+++L+ + Sbjct: 230 AQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 267 >gi|322832491|ref|YP_004212518.1| OmpA/MotB domain protein [Rahnella sp. Y9602] gi|321167692|gb|ADW73391.1| OmpA/MotB domain protein [Rahnella sp. Y9602] Length = 367 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 3/196 (1%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-D 209 + D ++ + + + + + + LQ L +K+ L+ Sbjct: 74 GPRSSDATSPIPGGGEDPTVQDGEVHKMEQSQGASKRESDDLQRLQQKLEDMLASDPRLK 133 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 ++ ++ T G+ I IID +N PMF S+I P +L+ I VL IS+ Sbjct: 134 DLRPHLMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIAPVLDGFPNKISLA 193 Query: 270 GHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P+ NW LS +RA ++ + +M G+SE ++ ++ G Sbjct: 194 GHTDDMPYATGERGYSNWELSTERANASRREMMSGGLSEGKVLRVMGMGSSMQLKNHPAG 253 Query: 328 NSANRRIDILVEDRQG 343 ++ NRRI ILV ++ Sbjct: 254 DAINRRISILVLNKHA 269 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 79/179 (44%), Gaps = 1/179 (0%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ ++++KK ++ GSWKI YADFMT +MAFFLVMW+I+ + I +Y Sbjct: 3 HQSHPIVVVRKKKNKHGGGHHGGSWKIAYADFMTAMMAFFLVMWLISISSPKELVQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F +T D +P ++ + H + S ++ ++ Q+ Sbjct: 63 FRTPLAVAITGGPRSSDATSPIPGGGEDPTVQDGEVHKMEQSQGASKRESDDLQRLQQKL 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ S+ + + + + +E+G + + + + + + P ++ + A+ Sbjct: 123 EDMLA-SDPRLKDLRPHLMINLTEQGLRIQIIDSKNRPMFQLGSAIVEPYMRDILRAIA 180 >gi|220924426|ref|YP_002499728.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219949033|gb|ACL59425.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 277 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 116/323 (35%), Gaps = 63/323 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 + W + +AD M +LM+FF+++ + D +A+ + FG N + Sbjct: 3 RKKRGGAHGGHGWFVTFADLMALLMSFFVMIAAYSTQDQKKLQAVAGSMRDAFGTNRESR 62 Query: 80 SKGIFDEQNPPERSS-QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 GI ++ P + ++ D++ D+ + + L + + Sbjct: 63 FNGIIEKNGLPSATRLRDPRDVTPDKASDRTTPPLPDEVFDNGVPQNGYRDGFG------ 116 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + ++ LQDL Sbjct: 117 --------------------------------------------LAMASLRQALQDLPD- 131 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + K VL T G+ +S++DQ N MF S+ P T VL+++ Sbjct: 132 ---------IAELSKNVLIHETERGLDVSLVDQDNRSMFPDGSTRPNDRTRQVLERLAPT 182 Query: 259 LAHSTEVISIRGHTDASPFRNIARDN-WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + + I++ G+T A+ W LS RA S ++L +G+ +DR + +SG A Sbjct: 183 IRSLSNRIAVAGYTAATRPGRRPPAPPWELSTGRAISVREILAGAGIPDDRFAVVSGKAD 242 Query: 318 HRLKIASDPMNSANRRIDILVED 340 +P +ANRR+ I + Sbjct: 243 TEPLFPDNPYIAANRRVTITLLR 265 >gi|269103244|ref|ZP_06155941.1| Flagellar motor rotation protein MotB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163142|gb|EEZ41638.1| Flagellar motor rotation protein MotB [Photobacterium damselae subsp. damselae CIP 102761] Length = 314 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 121/327 (37%), Gaps = 57/327 (17%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81 +W +AD T+LM FF+++ + D K I N N + Sbjct: 11 GAPAWMATFADLATLLMCFFVLLLSFSEMDVMKFKQIAGSMKNAFGVQNLLDINDIPKGT 70 Query: 82 GIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + ++ P R I++ + + +T+ ++D G +++ +R + ++ Sbjct: 71 SVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHEGESDKAGGTERSAGTLTGGQADKK 130 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 ++ + +++ L+ L K + Sbjct: 131 NKTQQQDQDQNASDS-------------------------------------LKQLEKVL 153 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + + + V E ++I I + F + S+ P+ +++++ ++ Sbjct: 154 NKAIEREIEEG---NVEIENFGQQLVIRI---KEQGAFPEGSAFLQPKFRPLVRQVASLV 207 Query: 260 AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 + I GHTD P + + R NW +S RA S Q + K +G + R+ ++ G A Sbjct: 208 KDVPGTVRISGHTDDRPVESELYRSNWDISAQRAVSVAQEMAKVTGFDQHRM-QVVGLAD 266 Query: 318 HRLKIASDP--MNSANRRIDILVEDRQ 342 ++D NRR++I + + Sbjct: 267 TAPIASNDTAEGRKRNRRVEISIMQGK 293 >gi|254509011|ref|ZP_05121116.1| flagellar motor protein [Vibrio parahaemolyticus 16] gi|219548046|gb|EED25066.1| flagellar motor protein [Vibrio parahaemolyticus 16] Length = 298 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 119/323 (36%), Gaps = 49/323 (15%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD M++LM FF+++ + D K I N + I + Sbjct: 1 MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60 Query: 87 QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P R ID+ + + IT+ +++ G +++ QR Sbjct: 61 EFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------------ 102 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 D K T + +N ++ + + + L+ L + I L Sbjct: 103 -----------DQGKLTGGQSPDTSTQNNQNSESDSQQQQSAEMSQELETLMESIKKALE 151 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + ++ E I I I R F + S+ P+ ++++I +++ Sbjct: 152 REIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPG 205 Query: 265 VISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322 ++ + GHTD + + R NW LS RA S Q + K G + R+ ++ G A Sbjct: 206 IVRVSGHTDNQRIESELYRSNWDLSAQRAVSVAQEMEKVRGFTSQRL-RVRGMADTEPLG 264 Query: 323 ASDPM--NSANRRIDILVEDRQG 343 +D S NRR++I + + Sbjct: 265 PNDTEAQRSRNRRVEISIMQGEA 287 >gi|253990166|ref|YP_003041522.1| flagellar motor protein MotB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781616|emb|CAQ84779.1| chemotaxis motb protein [Photorhabdus asymbiotica] Length = 327 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMF 237 E + A +RL L +++ + ++ +L + G+ I IID+ N PMF Sbjct: 100 QVEVVEANDDARRLNRLREQLDQLIITDPRLKALRPHLLIDMMDEGLRIQIIDRENRPMF 159 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295 S+ +L+ I +L IS+ GHTD + N NW LS DRA ++ Sbjct: 160 MIGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDDLKYANGERGYSNWELSADRANAS 219 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + L+ G+ E++I ++ G A D + NRRI ILV ++Q Sbjct: 220 RRELLIGGLDEEKILRVVGMASTVRLKQEDASSPVNRRISILVLNKQA 267 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 3/133 (2%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 +I K+ +D ++ GSWKI YADFMT +MAFFLVMW++ + I +YF + Sbjct: 8 VIKVKRRKRNDIKHHGGSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEYFRTPLQ 67 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + + D NP +D+ E T V++ + + ++ + E + Sbjct: 68 VAINKGERSSDSSNPIPGGG---LDVLYQEGDTLRQVEVVEANDDARRLNRLREQLDQLI 124 Query: 135 SNSQQSEHCKNSL 147 + + + L Sbjct: 125 ITDPRLKALRPHL 137 >gi|149191103|ref|ZP_01869362.1| flagellar motor protein MotB [Vibrio shilonii AK1] gi|148835031|gb|EDL52009.1| flagellar motor protein MotB [Vibrio shilonii AK1] Length = 294 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 115/321 (35%), Gaps = 51/321 (15%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD M++LM FF+++ + D K I N + I + Sbjct: 1 MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60 Query: 87 QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P R ID+ + + IT+ +++ G +++ QR + + + +++ + Sbjct: 61 EFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGNQRDDGKMTGGQTADRTQKNQ 120 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + + + + L L + I L Sbjct: 121 ---------------------------------IGTASAQSEQENEDLDKLEEIIKKALQ 147 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + V+ + ++I I + F + S+ P+ +++++ +++ Sbjct: 148 QEIKQGAVE---VDNLGQQLVIRI---QEKGAFPEGSAFLQPKFRPLVRQVADLVKDIPG 201 Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD P + R NW LS RA S Q + K + ++ G A Sbjct: 202 QVRVSGHTDNLPLDSELYRSNWDLSSQRAVSVAQEMEKVKGFSHQRLRVLGVADTEPLGP 261 Query: 324 SDPM--NSANRRIDILVEDRQ 342 +D + NRR++I + + Sbjct: 262 NDTERQRARNRRVEISIMQGE 282 >gi|86356325|ref|YP_468217.1| flagellar motor protein MotB [Rhizobium etli CFN 42] gi|86280427|gb|ABC89490.1| chemotaxis motility protein [Rhizobium etli CFN 42] Length = 436 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 130/266 (48%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + D +P + Q ++ + K+ T + + + ++ Sbjct: 169 ATGADGGQAYRDPFDPDFWTKQVEVTTAGKPLPGKSEGQAAESETTEIAKAEDMKPVPLA 228 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 E + +++ GK EK+ ++ + +++K+ Sbjct: 229 TDQKPAKEVKETMGVAEAKDGKVTDGKAPEEKTAEARKDAEHQKEADRDAAGAEQQKKEA 288 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + + + G VA + +G+ G+L+SI DQ + MF+ S++P E ++ ++ Sbjct: 289 EQLQAQIAQQIGGVAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMVLAME 348 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 KIG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G++E R+S++S Sbjct: 349 KIGTILKERGGAVAIRGHTDGRQYKGGQNENWRLSMDRAQSAYYMLVRGGLNETRVSQVS 408 Query: 314 GFAHHRLKIASDPMNSANRRIDILVE 339 GFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 409 GFADRRLKLPADPFNAANRRIEILVQ 434 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSDGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114 TK A+ YFNP K K D E + S+ K D + + D Sbjct: 61 TKAAVATYFNPIKLADEKPTEKGLKKPVDHAEGEEKKEKSKQKEDNPTEGKSAADGDDQT 120 Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 S +Q + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGQAYRD 180 Query: 173 YFLPPLSKEKILAMKRKKRL 192 F P +++ K L Sbjct: 181 PFDPDFWTKQVEVTTAGKPL 200 >gi|317047826|ref|YP_004115474.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b] gi|316949443|gb|ADU68918.1| OmpA/MotB domain protein [Pantoea sp. At-9b] Length = 342 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 4/195 (2%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 R S+ + D + E + ++++ L R RL++ ++ L Sbjct: 74 QRSSDSDSPIPGGGDDPTKKDGEVKKVVDMDAQKRQLDDIRLNRLREKLDQLIEADPRLK 133 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 A + ++ G+ I IID +N PMF S+ P +L+ I VL IS Sbjct: 134 A--LRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDIPNKIS 191 Query: 268 IRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + GHTD + NW LS DRA ++ + LM G+ ++ ++ G A Sbjct: 192 LAGHTDDFQYATGDRGYSNWELSADRANASRRELMMGGLDGSKMLRVVGMADTMKLKNRG 251 Query: 326 PMNSANRRIDILVED 340 ++ NRRI +LV + Sbjct: 252 GNDAVNRRISLLVLN 266 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 3/192 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N ++IK++ + GSWKI YADFMT +MAFF+VMW+++ + I +Y Sbjct: 3 HGNRPIVLIKRRKHKRHEGGH-GSWKIAYADFMTAMMAFFMVMWLLSIANPQQLVQIAEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T + D +P + + + K + + R + Sbjct: 62 FRTPLKVALTGGQRSSDSDSPIPGGGDDPTKKDGEVKKVVDMDAQKRQLDDIRLNRLREK 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + ++ + + + E+G + + + K + + P ++ + A+ Sbjct: 122 LDQLIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA- 180 Query: 189 KKRLQDLAKKIS 200 L D+ KIS Sbjct: 181 -PVLNDIPNKIS 191 >gi|307546933|ref|YP_003899412.1| flagellar motor protein MotB [Halomonas elongata DSM 2581] gi|307218957|emb|CBV44227.1| flagellar motor protein MotB [Halomonas elongata DSM 2581] Length = 317 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 3/174 (1%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILIS 227 E L + + ++++ +DL ++I + + + F+ T G+ I Sbjct: 93 TEGERARVDLRQRSRPSERQRRAFRDLQRRIEMAIDADPDLKQLRDQLRFDMTPEGLRIQ 152 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNW 285 ++D PMF+ S P +L+ + +L +SI GHTD+ + N NW Sbjct: 153 LVDTEQRPMFELGSDRVAPYMRDLLRLMAPLLNELPNDLSISGHTDSLAYLNGFQGYGNW 212 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 LS RA ++ + L+ G+ ++ +++GFA + ++P + NRRI++LV Sbjct: 213 ELSSARANASRRELVAGGLDSAKLLRVAGFADQVVMPDTEPSDPVNRRIELLVL 266 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 49/140 (35%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 ++ GSWKI ADFMT LMA FLVMWI++ ++ + +YF+ + + Sbjct: 19 HRHHGGSWKIALADFMTALMALFLVMWILSTASRQEREGVAEYFSTPLVAAIAGGDSVSM 78 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + + + + + ++ + + ++ Sbjct: 79 SETVIPGGGPDPVYTEGERARVDLRQRSRPSERQRRAFRDLQRRIEMAIDADPDLKQLRD 138 Query: 146 SLTRDSEKGKDLCKSTDLEK 165 L D + D E+ Sbjct: 139 QLRFDMTPEGLRIQLVDTEQ 158 >gi|300722595|ref|YP_003711885.1| flagella protein [Xenorhabdus nematophila ATCC 19061] gi|297629102|emb|CBJ89687.1| enables flagellar motor rotation, linking torque machinery to cell wall [Xenorhabdus nematophila ATCC 19061] Length = 333 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 4/169 (2%) Query: 179 SKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 +++ A + +RL L +++ ++ + +L + G+ I IID+ N PMF Sbjct: 100 QTKEVEASEENRRLNRLHQQLDQLIITDPRLKELRPHLLIDMMDEGLRIQIIDRENRPMF 159 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295 S+ +LQ I +L IS+ GHTD+ + N NW LS DRA ++ Sbjct: 160 MIGSAKVESYMSDILQAIAPILNDIPNKISLSGHTDSLKYANGQRGYSNWELSSDRANAS 219 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSANRRIDILVEDRQG 343 + L+ G+ E +I ++ G A DP NRRI I+V +++ Sbjct: 220 RRELLVGGLDEVKILRVVGMASTVSMQKGIDPNAPVNRRISIIVLNKEA 268 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 4/192 (2%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N+ +I KK + + GSWKI YADFMT +MAFFLVMW+I+ +I +Y Sbjct: 2 RANNVSVIRVKKRKKHNPSQHGGSWKIAYADFMTAMMAFFLVMWLISIASPQELTSIAEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F + + D NP + D I + + +++ N++ + Sbjct: 62 FRTPLQVAINKGHQSSDSTNPIPGGGDDV--FQQDGEIFRQTKEVEASEENRRLNRLHQQ 119 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +++ + E + L ++G + + + + + + + A+ Sbjct: 120 LDQLIITDPRLKELRPHLLIDMMDEGLRIQIIDRENRPMFMIGSAKVESYMSDILQAIA- 178 Query: 189 KKRLQDLAKKIS 200 L D+ KIS Sbjct: 179 -PILNDIPNKIS 189 >gi|54308004|ref|YP_129024.1| flagellar motor protein MotB [Photobacterium profundum SS9] gi|46912430|emb|CAG19222.1| putative sodium-driven polar flagellar protein MotB [Photobacterium profundum SS9] Length = 310 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 115/329 (34%), Gaps = 55/329 (16%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78 P W +AD T+LM FF+++ + D K I N + Sbjct: 8 CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + ++ P R I++ + + I T+ ++D G +++ +R + Sbjct: 68 KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRAGGTKRDAGKLTG--- 124 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 KS D+ +N+ + + + L Sbjct: 125 ---------------------GKSADVATQMNQNNQS-------------EMSESQEQLL 150 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + L + D ++ E ++I I + F S+ P+ ++++I Sbjct: 151 EVMQKALDREIQDGAIE---VENFGQQVVIRI---KEKGAFPAGSAFLQPKFRPLVRQIA 204 Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +++ +I I GHTD + R NW LS RA S Q + + + + ++ G Sbjct: 205 DLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEQVKGFDHKRLRVVGL 264 Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDRQ 342 A ++ NRR++I + + Sbjct: 265 ADTAPLNSNKTAEERKVNRRVEISIMQGK 293 >gi|260776526|ref|ZP_05885421.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] gi|260607749|gb|EEX34014.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] Length = 300 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 116/321 (36%), Gaps = 47/321 (14%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD M++LM FF+++ + D K I N + I + Sbjct: 1 MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60 Query: 87 QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P R ID+ + + IT+ +++ G +++ QR Sbjct: 61 EFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------------ 102 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 D K T + ++ E+ + + + L+ L + I L Sbjct: 103 -----------DKGKQTGGKSPDTSTQDSQNSESDSEQQQSAELSQELETLMESIKKALE 151 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + ++ E I I I R F + S+ P+ ++++I E++ Sbjct: 152 REIEQGAIE---VENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPG 205 Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 ++ + GHTD + R NW LS RA S Q + K + ++ G A + Sbjct: 206 IVRVSGHTDNQRIDSELYRSNWDLSAQRAVSVAQEMEKVRDFSHQRLQVRGMADTQPLGP 265 Query: 324 SDPM--NSANRRIDILVEDRQ 342 +D S NRR++I + + Sbjct: 266 NDTEAQRSRNRRVEISIMQGE 286 >gi|90410908|ref|ZP_01218922.1| flagellar motor protein [Photobacterium profundum 3TCK] gi|90328121|gb|EAS44432.1| flagellar motor protein [Photobacterium profundum 3TCK] Length = 310 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 114/329 (34%), Gaps = 55/329 (16%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMT 78 P W +AD T+LM FF+++ + D K I N + Sbjct: 8 CPPGAPLWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNMLEVKDIP 67 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + ++ P R I++ + + I T+ ++D G +++ +R + Sbjct: 68 KGTSVIAQEFRPGRPEPTPIEVIMQQTIDMTQRTLDFHDGESDRAGGTKRDAGKLTGG-- 125 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 QS + ++++ + + + L Sbjct: 126 --QSADVATQMNQNNQS---------------------------------EMSESQEQLL 150 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + L + D + E ++I I + F S+ P+ ++++I Sbjct: 151 EVMQKALDREIQDGA---IEVENFGQQVVIRI---KEKGAFPAGSAFLQPKFRPLVRQIA 204 Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +++ +I I GHTD + R NW LS RA S Q + + + + ++ G Sbjct: 205 DLVKDVPGIIRISGHTDNQKLDSELYRSNWDLSAQRAVSVAQEMEQVKGFDHKRLRVVGL 264 Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDRQ 342 A ++ NRR++I + + Sbjct: 265 ADTAPLNSNKTAEERKVNRRVEISIMQGK 293 >gi|300717114|ref|YP_003741917.1| flagellar motor protein [Erwinia billingiae Eb661] gi|299062950|emb|CAX60070.1| Flagellar motor protein [Erwinia billingiae Eb661] Length = 346 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 3/200 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +LT S+ + + + ++ + + + RL L +K+ + Sbjct: 67 KVALTGGSKSSESISVIPGGGEDPTQKSGEVHKVVDMDAQKRKLDEIRLNRLREKLDQLI 126 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ ++ G+ I IID N PMF + P +L+ I +L Sbjct: 127 ESDPRLKALRPHLIINMVEEGLRIQIIDSENRPMFKTGRAEVEPYMRDILRAIAPILNDI 186 Query: 263 TEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 IS+ GHTD + N NW LS DRA ++ + L+ G+ ++ ++ G A Sbjct: 187 PNKISLAGHTDDFQYANGDRGYSNWELSADRANASRRELVTGGLDSGKMLRVVGMADTMS 246 Query: 321 KIASDPMNSANRRIDILVED 340 ++ NRRI +LV + Sbjct: 247 LKNRGADDAVNRRISLLVLN 266 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 2/192 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + N+ II+ KK GSWKI YADFMT +MAFF+VMW+++ + I Y Sbjct: 2 KHNNHPIILVKKKKHKRHEGGHGSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T + + ++ S + H + K + R + Sbjct: 62 FKTPLKVALTGGSKSSESISVIPGGGEDPTQKSGEVHKVVDMDAQKRKLDEIRLNRLREK 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + S+ + + + E+G + + + K + P ++ + A+ Sbjct: 122 LDQLIESDPRLKALRPHLIINMVEEGLRIQIIDSENRPMFKTGRAEVEPYMRDILRAIA- 180 Query: 189 KKRLQDLAKKIS 200 L D+ KIS Sbjct: 181 -PILNDIPNKIS 191 >gi|240137207|ref|YP_002961676.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1] gi|240007173|gb|ACS38399.1| Chemotaxis protein MotB [Methylobacterium extorquens AM1] Length = 468 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 10/265 (3%) Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 D + S + + I + S+ + K + + Sbjct: 199 LDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGVKLASAEPMPLTVPSAEPAKPSPE 258 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR----------LQ 193 L +E + T L K+ F P + L Sbjct: 259 AAPLASPAEAKPAPPEPTLLAKAEAPPAKDFTPAKDLAPAKELAAPADQAAKAAETAALS 318 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +I+ + L V T G+LISI D+ N MF S+ P P+ + L+ Sbjct: 319 ALKAEIARAVPSLPNGAPAPQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKALE 378 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +I ++L + +RGHTD PFR+ DNWRLS RA A +L++ G+ E RI +I Sbjct: 379 RIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDRIE 438 Query: 314 GFAHHRLKIASDPMNSANRRIDILV 338 G+A + +IA++P + NRRI+IL+ Sbjct: 439 GYADRQPRIANNPKAAENRRIEILL 463 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 3/180 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YF Sbjct: 3 DRAHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP +T KG+ D Q+ P + + D + D ++ ++ + Sbjct: 63 NPVKLAEVTHDRKGVNDPQDTPNDPAPSGKGKG-DGGNAEGKGDAAGAPGSRARESALFQ 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + L+ ++ + + F P + L +R Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180 >gi|291617784|ref|YP_003520526.1| MotB [Pantoea ananatis LMG 20103] gi|291152814|gb|ADD77398.1| MotB [Pantoea ananatis LMG 20103] gi|327394202|dbj|BAK11624.1| chemotaxis protein MotB [Pantoea ananatis AJ13355] Length = 424 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 3/200 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +LT K+E + + + RL L +K+ + Sbjct: 67 KVALTGGQRSSDSSSPIPGGGDDPTKKEGEVKKVVDMDAQKRKLDEIRLNRLREKLDQLI 126 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ ++ G+ I IID +N PMF S+ P +L+ I VL Sbjct: 127 EADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNDI 186 Query: 263 TEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 ISI GHTD + NW LS DRA ++ + L+ G+ +I +I G A Sbjct: 187 PNRISIAGHTDDIQYAGGDKGYSNWELSADRANASRRELVIGGLDGGKILRIVGMADTMK 246 Query: 321 KIASDPMNSANRRIDILVED 340 ++ NRRI +LV + Sbjct: 247 LKNRGGDDAVNRRISLLVLN 266 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 3/192 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N ++I+K+ + GSWKI YADFMT +MAFF+VMW+++ I +Y Sbjct: 3 HGNRPIVLIRKRKHKKHEGGH-GSWKIAYADFMTAMMAFFMVMWLLSIASPQQLIQIAEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T + D +P + + + K + R + Sbjct: 62 FQTPLKVALTGGQRSSDSSSPIPGGGDDPTKKEGEVKKVVDMDAQKRKLDEIRLNRLREK 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + ++ + + + E+G + + + K + + P ++ + A+ Sbjct: 122 LDQLIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA- 180 Query: 189 KKRLQDLAKKIS 200 L D+ +IS Sbjct: 181 -PVLNDIPNRIS 191 >gi|319781670|ref|YP_004141146.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167558|gb|ADV11096.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 445 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 10/272 (3%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 Y +PF + + +Q + + I+ K + K Sbjct: 179 ASYRDPFEPDFWS-------QQVAAPGAEASAQRTKIEGDPAKPGDKTAETQVLKVKAVP 231 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + + L+ S+ N T + + K + K+ E + P EK Sbjct: 232 PVAAPLEPLAKDATSKQAANPATALAGETKPDGTKAAVAKA-EPEAQKAVQPDIGEKAPT 290 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K D+ ++++ D + GV E T G++ISI DQ + MF+ S++P Sbjct: 291 AAAVKAAADVKRQLADAFKP--GDKLHDGVSVEATDKGVVISITDQLDFGMFEVGSALPR 348 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 E ++ ++KIG ++ ISI GHTDA PFR+ + DNWRLS RA+SAY +L++ GV Sbjct: 349 RELVLAMEKIGRIVNSQKGTISINGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVD 408 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 E RI++++GFA + KIA+DP+ +ANRRI+IL Sbjct: 409 ERRITEVAGFADRQPKIAADPLAAANRRIEIL 440 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 12/203 (5%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S + +Q + II+++ D ++ G WKI +ADFMT +M FFLVMW+INA ++ TK Sbjct: 2 SVANADQGRHEIIIVRRSHDDHDEAHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTK 61 Query: 63 KAIEQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 A+ YFNP + ++ KG+ D + P D + + G++ +K Sbjct: 62 AAVASYFNPVKLVDRNSSRKGLEDLGDGPRAMGLTADDPQEATSKAGQNGNAGAGASERK 121 Query: 122 KQYQRLE-----------NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 + Q + + LS ++++ + G Sbjct: 122 QDKQEPQQAEHSDDHLFADPYAVLSEIATDTGVMQNVSQKGDGGVQAAGPATGASGGASY 181 Query: 171 ENYFLPPLSKEKILAMKRKKRLQ 193 + F P +++ A + Q Sbjct: 182 RDPFEPDFWSQQVAAPGAEASAQ 204 >gi|239817126|ref|YP_002946036.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239803703|gb|ACS20770.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 315 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 12/223 (5%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 KQ + + + S K+S + G + ST + + + + Sbjct: 50 SPKQREGIAEHFRMPLKVALSGGEKSSTSISVVPGGGMDPSTRADGEVQRADAEDDADAD 109 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + + K +++ V +L + T G+ + I+D N PMFD Sbjct: 110 RLASMKERLDKLIEN----------SPVFRQFRSQILIDITTEGLRLQIVDNENRPMFDL 159 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD--NWRLSLDRAYSAYQ 297 +S+ +P +L+++G L I++ GHTDA + N R NW LS DRA ++ + Sbjct: 160 ASAQVVPHMRAILRELGPTLNELPNKITLSGHTDAFVYSNGDRSYGNWELSADRANASRR 219 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 L+ G++E+++ ++ G A S+P N NRRI I++ + Sbjct: 220 ELVMGGMAENKVLRVVGLADSMHLDRSNPRNPINRRISIILLN 262 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 1/124 (0%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 ++ ++VA + G WKI YADFMT +MAFFLVMW+++ T ++ I ++F K Sbjct: 8 VVVRRVAAHGGGGHGGGWKIAYADFMTAMMAFFLVMWLLSNTSPKQREGIAEHFRMPLKV 67 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 ++ + + + D + + + + +RL+ I Sbjct: 68 ALSGGEKSSTSISVVPGGGMDP-STRADGEVQRADAEDDADADRLASMKERLDKLIENSP 126 Query: 136 NSQQ 139 +Q Sbjct: 127 VFRQ 130 >gi|254559218|ref|YP_003066313.1| chemotaxis protein MotB [Methylobacterium extorquens DM4] gi|254266496|emb|CAX22260.1| Chemotaxis protein MotB [Methylobacterium extorquens DM4] Length = 474 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 1/247 (0%) Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +S + + + + + + L + S K ++ Sbjct: 224 QSLSDAMRQAGVKLASAEPMPLTVPSAEPAKPSAEAAPLASPAEAKPAPPEPTLLAKAEA 283 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 KD + DL + + L + + A + L L +I+ + L Sbjct: 284 PPAKDFAPAKDLAPAKDLAPAKELAAPADQAAKAAETAA-LSALKAEIARAVPSLPNGAP 342 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V T G+LISI D+ N MF S+ P P+ + L++I ++L + +RGH Sbjct: 343 APQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKALERIAKILNSRPGRVVVRGH 402 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 TD PFR+ DNWRLS RA A +L++ G+ E RI +I G+A + +IA++P + N Sbjct: 403 TDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDRIEGYADRQPRIANNPKAAEN 462 Query: 332 RRIDILV 338 RRI+IL+ Sbjct: 463 RRIEILL 469 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 3/180 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YF Sbjct: 3 DRAHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP +T KG+ D Q+ P + + D + D ++ ++ + Sbjct: 63 NPVKLAEVTHDRKGVNDPQDTPNDPAPS-GKGKGDGGNAEGKGDAAGAPGSRARESALFQ 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + L+ ++ + + F P + L +R Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180 >gi|261821136|ref|YP_003259242.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163] gi|261605149|gb|ACX87635.1| OmpA/MotB domain protein [Pectobacterium wasabiae WPP163] Length = 350 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 4/204 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +LT S+ +++ + + + + RL L +++ + Sbjct: 65 KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEARLNKLRERLDQLI 124 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ +L E G+ I IID +N PMF S+ P +L+ I +L Sbjct: 125 EADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDF 184 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319 +SI GHTD + NW LS DRA ++ + L G+S+ ++ ++ G A Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELTFGGLSDGKVLRVVGMAATMS 244 Query: 320 LKIASDPMNSANRRIDILVEDRQG 343 LK A+ ++ NRRI +LV +Q Sbjct: 245 LKQATSGNDAINRRISLLVLSKQA 268 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 70/177 (39%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ D +P + + + +++ + R + Sbjct: 62 TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEARLNKLRERLD 121 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ + + L E+G + + + K + + P ++ + A+ Sbjct: 122 QLIEADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178 >gi|163850073|ref|YP_001638116.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens PA1] gi|163661678|gb|ABY29045.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1] Length = 468 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 105/270 (38%), Gaps = 2/270 (0%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P L ++ + P++ S I + + + E Sbjct: 194 PADSRLDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGIKLASAEPMPLTIPSAEPT 253 Query: 131 IFYLSNSQ--QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + K + + K ++ Sbjct: 254 KPSAEAAPLASPAEAKPAPPEPTLLAKAEAPPAKDLAPAKDLAPAKELAAPADQAAKAAE 313 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L L +I+ + L V T G+LISI D+ N MF S+ P P+ Sbjct: 314 RAALSALKAEIARAVPSLPNGAPAPQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKV 373 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + L++I ++L + +RGHTD PFR+ DNWRLS RA A +L++ G+ E R Sbjct: 374 VKALERIAKILNSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEAR 433 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338 I +I G+A + +IA++P + NRRI+IL+ Sbjct: 434 IDRIEGYADRQPRIANNPKAAENRRIEILL 463 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 9/248 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YF Sbjct: 3 DRPHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP +T KG+ D Q+ P + + D + D ++ ++ + Sbjct: 63 NPVKLAEVTHDRKGVNDPQDTPNDPAPS-GKGKGDGGNAEGKGDAAGAPGSRARESALFQ 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + L+ ++ + + F P + L +R Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180 Query: 189 KKRLQDLAKKISS------TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L ++ A + + E+ + S+ D +S+ Sbjct: 181 TDNPGALDSAATAPADSRLDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGIKLASA 240 Query: 243 IPLPETIV 250 P+P TI Sbjct: 241 EPMPLTIP 248 >gi|117928060|ref|YP_872611.1| OmpA/MotB domain-containing protein [Acidothermus cellulolyticus 11B] gi|117648523|gb|ABK52625.1| OmpA/MotB domain protein [Acidothermus cellulolyticus 11B] Length = 290 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 109/324 (33%), Gaps = 67/324 (20%) Query: 24 DDTPNNLGS---WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + S W + Y D +T+LM F+V++ I+ D + Sbjct: 16 HAEGGHGPSHERWLLTYTDMVTLLMVLFIVLFAISVVDKKKFAELAD------------- 62 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 L+ T + G + K + + + + Sbjct: 63 ------------------GLAHQFGSTPKVLPAGTGVMDGGKTANHDQGQLTNNPDQPIA 104 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 S ++ + + A ++ D ++I Sbjct: 105 PI-----------------------SDAEQSHAQPSAQASASAAANAERETFLDAERRIE 141 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + L A + V F G+++SI+ + +FD + P VL I VL Sbjct: 142 AALQ---AKGLADSVKFRVETRGLIVSIV--TDQVLFDTGKADLRPIGRQVLDAIAPVLR 196 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 IS+ GHTD P NW LS RA + + L+ + G+ E+R+S +G+A Sbjct: 197 GLPNDISVEGHTDNVPITGGPFASNWELSAIRATTVLRYLVSNDGLPEERMSA-TGYADT 255 Query: 319 RLKIASDP--MNSANRRIDILVED 340 R + +D NRR+DI+V Sbjct: 256 RPLVPNDTPEHRQQNRRVDIVVLS 279 >gi|115523189|ref|YP_780100.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisA53] gi|115517136|gb|ABJ05120.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 423 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 111/266 (41%), Gaps = 2/266 (0%) Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 G A + FD + P SS D ++ N + + + Q +R + Sbjct: 155 GVKGGEAYRDPFDPISWPMASSSPLEDKALGRKEIGNLPFDEDAAGLIEGQGRRPSQGVP 214 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + + D K L + + + + Sbjct: 215 DATAAPAAPSEAAQPPPAKPDQPDNPKPVRLFADEGPKLQPPAERAAAPRPDPAPAQSSA 274 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L I++ L+ L A + V T G+LI++ D N MF S+ P P + L Sbjct: 275 SKLQAAINAALASLGAAHPATEV--RETSEGLLINLTDDANYGMFANGSAEPTPGLVRTL 332 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 KI +++ ++ +RGHTD P+R+ DNWRLS RA+ A+ +L++ G+ RI +I Sbjct: 333 DKITPLISQQRGLVIVRGHTDDRPYRSADYDNWRLSTARAHMAFHMLIRGGLDAKRIERI 392 Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338 G+A R K +DP NRRI+IL+ Sbjct: 393 EGYADRRPKTPNDPSAPQNRRIEILI 418 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 6/191 (3%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 +Q+ + III+++ +D G WKI YADFMT +MAFFLVMW+++AT +T++++ Sbjct: 3 DQDRPELIIIRRRSDLDVEEK-SGVWKIAYADFMTAMMAFFLVMWLMSATTPETRESVAT 61 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFNP T D + + + E K G Q+ Q + Sbjct: 62 YFNPIKLTDSTP-----DRKGLHDAKRVDPGKADEGETARPKPEPDKAGEATQRPQLPKT 116 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ L + + + ++ + E Y P +A Sbjct: 117 HHDEAALFRDPYTILSEIAGAPPPLAQNGTSLDPGRKEGVKGGEAYRDPFDPISWPMASS 176 Query: 188 RKKRLQDLAKK 198 + L +K Sbjct: 177 SPLEDKALGRK 187 >gi|320157195|ref|YP_004189574.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O] gi|319932507|gb|ADV87371.1| flagellar motor rotation protein MotB [Vibrio vulnificus MO6-24/O] Length = 300 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 119/322 (36%), Gaps = 49/322 (15%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD M++LM FF+++ + D K I N + I + Sbjct: 1 MGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQ 60 Query: 87 QNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P R ID+ + + IT+ +++ G +++ QR Sbjct: 61 EFRPGRPEPTPIDVIMQQTIDITQQTLEFHEGESDRAGGTQR------------------ 102 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 D K T + + +++ + K ++ L + I L Sbjct: 103 -----------DQGKMTGGQSPETSTQTNQNTEQQQQQQQSEAMSKEMETLMESIKKALE 151 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + ++ E I+I + R F + S+ P+ ++++I E++ Sbjct: 152 REIEQGAIE---VENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLVRQIAELVKDVPG 205 Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322 ++ I GHTD + R NW LS RA S Q + K G S R+ ++ G A + Sbjct: 206 IVRISGHTDNQRLDSELYRSNWDLSAQRAVSVAQEMEKVRGFSHQRL-RVRGMADTDPLV 264 Query: 323 ASDP--MNSANRRIDILVEDRQ 342 +D + NRR++I + + Sbjct: 265 DNDTEENRARNRRVEISIMQGE 286 >gi|13472587|ref|NP_104154.1| flagellar motor protein MotB [Mesorhizobium loti MAFF303099] gi|14023333|dbj|BAB49940.1| flagellar motor protein; MotB [Mesorhizobium loti MAFF303099] Length = 471 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 13/283 (4%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 Y +PF + + + +R L + ++ V Sbjct: 186 ASYRDPFEPDFWSQQVAAPAAEASAQRPKIEGDPLKPGDKAAESQVAKVKAVPPAPPVKD 245 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS------ 179 + + K T+ S K+ D + +K + Sbjct: 246 APLEPLAESGKDAAATMAKAGETKASGAKASDAKTGDAKTEDSKAVAAAKADTAAAAQET 305 Query: 180 -----KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 EK K D+ ++++ D + GV E T G++ISI DQ + Sbjct: 306 AAPEAGEKPPTAAAVKAAADVKQQLADAFKP--GDKLHDGVSVEATDKGVVISITDQLDF 363 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 MF+ S++P E ++ ++KIG ++ ISI GHTDA PFR+ + DNWRLS RA+S Sbjct: 364 GMFEVGSAVPSRELVLAMEKIGRIVNSQKGTISINGHTDARPFRSASYDNWRLSTARAHS 423 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 AY +L++ GV E RI++++GFA + K +DP+++ANRRI+IL Sbjct: 424 AYYMLVRGGVDERRITEVAGFADRQPKDPADPLSAANRRIEIL 466 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 6/177 (3%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 D + + II+++ D ++ G WKI +ADFMT +M FFLVMW+INA ++ TK A+ Sbjct: 15 DADHGRHEIIIVRRAHDDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTKAAV 74 Query: 66 EQYFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 YFNP + ++ KG+ D + P + + GS++ KK Sbjct: 75 ASYFNPVKLVDRNSSRKGLEDLGDGPSAIGSTADKPQQTKAKPGQAGSGDAGSSDAKKDK 134 Query: 125 QRLENNIFYLSNSQQS-----EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 Q+ + +L + + S+KG +S + +Y P Sbjct: 135 QQPQQTDDHLFADPYAVLSEIATDTGVMQNVSQKGDGGAQSAGPATGASGGASYRDP 191 >gi|91793918|ref|YP_563569.1| flagellar motor protein MotB [Shewanella denitrificans OS217] gi|91715920|gb|ABE55846.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 318 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 119/337 (35%), Gaps = 54/337 (16%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P W +AD M++LM FF+++ D K I N Sbjct: 3 QAKCVCPPVGAPLWLATFADLMSLLMCFFVLLLSFAEMDVMKFKQIAGSMKYAFGVQNKV 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENN 130 + + + P R I++ + +T+ +++ + G + Q+ + Sbjct: 63 EVKDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTQQTIEYQAGEDDSAGGVQKQQG- 121 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 E+ + +K + ++ Sbjct: 122 ---------------------------------EQRGGEASATAQETAEAKKSESSSSQE 148 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + + KK++ L+ + D + E+ I+I I R F S P+ Sbjct: 149 NINEQVKKMAEQLNEEIVDGA---IEIESLGQQIIIRI---REKGSFASGSGFLQPKFKP 202 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDR 308 V++ IG +L +I++ GHTD N NW LS RA + M+ G E R Sbjct: 203 VIRSIGSLLKDVPGIITVAGHTDGMHISNELYSSNWDLSSARAVAVAHEFMRVPGFDETR 262 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + K+ G A + ++++ S NRR++I +E + Sbjct: 263 M-KVVGMASNDQLVSNESSENRSQNRRVEITIEQGKA 298 >gi|242238952|ref|YP_002987133.1| flagellar motor protein MotB [Dickeya dadantii Ech703] gi|242131009|gb|ACS85311.1| OmpA/MotB domain protein [Dickeya dadantii Ech703] Length = 377 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 6/213 (2%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR--LQD 194 +Q +E+ + L G + +++ + + +S++ R + L Sbjct: 54 AQIAEYFRTPLKIAITSGPKMSDASNPIPGGGADPTHQEGDVSRQIDTMDGRLEEIKLNK 113 Query: 195 LAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L +++ + ++ +L E G+ I IID N PMF S+ P +L+ Sbjct: 114 LRERLDQLIEADPRLRALRPHLLIEMVDEGLRIQIIDSNNRPMFKTGSAQVEPYMSDILR 173 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I +L IS+ GHTD + + NW LS DRA ++ + L+ G++E ++ + Sbjct: 174 AIAPILNDIPNKISLSGHTDDARYATGERGYSNWELSADRANASRRELIAGGLTEGKVLR 233 Query: 312 ISGFAHHR-LKIASDPMNSANRRIDILVEDRQG 343 + G A LK A D ++ NRRI ++V ++Q Sbjct: 234 VVGMADTMNLKQAKDGSDAINRRISLVVLNKQA 266 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 56/126 (44%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ + D NP + D +++D ++ K +RL+ Sbjct: 62 TPLKIAITSGPKMSDASNPIPGGGADPTHQEGDVSRQIDTMDGRLEEIKLNKLRERLDQL 121 Query: 131 IFYLSN 136 I Sbjct: 122 IEADPR 127 >gi|56461234|ref|YP_156515.1| flagellar motor protein MotB [Idiomarina loihiensis L2TR] gi|56180244|gb|AAV82966.1| Flagellar motor protein [Idiomarina loihiensis L2TR] Length = 312 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 66/347 (19%), Positives = 123/347 (35%), Gaps = 49/347 (14%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M S +++E + + P L W +AD MT+LM FF+++ + D Sbjct: 1 MASEKVRDEEQED---------CNCPPPGLPMWMATFADLMTLLMCFFVLLLAFSEMDVL 51 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 K I K QN E K I + + T Q Sbjct: 52 KFKQIAGSM-----------KYALGVQNKIEVKDIPKGTSVIAQEFRPGRPEPTPIETIQ 100 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++ + + + + + + E+G S D +K E + +SK Sbjct: 101 QQTVEMTQQMLEFQEGESDFAGGQQT-----ERGGQESDSADDQKEAEAENTEAMTQVSK 155 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E L ++I L + + E I+I I R F + Sbjct: 156 E-------------LMRRIERQLENEIK---AGTIELEQHGQQIIIRI---REQGSFPEG 196 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY-QV 298 S+ P+ ++Q++ L ++I GH+D + +W LS RA + ++ Sbjct: 197 SAFLQPQFRPIIQQVAGALKDIPGEVTISGHSDNEKLVSEIYSSDWDLSSKRAVAVAEEM 256 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 L SEDR+ + G++ + + ++ NRR++I + + Sbjct: 257 LKVDDFSEDRLV-VMGYSDTKPLVPNNSEENRKRNRRVEISIMQGKA 302 >gi|227112504|ref|ZP_03826160.1| flagellar motor protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326903|ref|ZP_03830927.1| flagellar motor protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 351 Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 4/204 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +LT S+ +++ + + + + RL L +++ + Sbjct: 65 KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLDQLI 124 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ +L E G+ I IID +N PMF S+ P +L+ I +L Sbjct: 125 EADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDF 184 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319 +SI GHTD + NW LS DRA ++ + L+ G+S+ ++ ++ G A Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMS 244 Query: 320 LKIASDPMNSANRRIDILVEDRQG 343 LK A+ ++ NRRI +LV RQ Sbjct: 245 LKQATGGNDAINRRISLLVLSRQA 268 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 70/177 (39%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ D +P + + + +++ + R + Sbjct: 62 TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLD 121 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ + + L ++G + + + K + + P ++ + A+ Sbjct: 122 QLIEADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178 >gi|209547941|ref|YP_002279858.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533697|gb|ACI53632.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 447 Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 6/278 (2%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 E Y +PF + T + ++ D+K ++ Sbjct: 176 EAYRDPFDPDFWTKQVEVTTAGKSAPPGKSDEQAAESATTEIAKVEDMKPIPLTTDQKAA 235 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + ++ + + K S + +E K + +K + +++ E+ Sbjct: 236 QEAKGAAEATDGKAPDD-KKSGDKKAEDKKAPAQKDAAQKDADHQKDADKSAAETEQQQQ 294 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + ++ +A++I G +A + +G+ + G+L+SI DQ + MFD S++P Sbjct: 295 KEAEQLQAQIAQRI-----GGIAGKLAEGLTVTASEGGLLVSISDQSDDSMFDIGSAVPR 349 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 E ++ ++KIG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ Sbjct: 350 QEMVLAMEKIGAILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLD 409 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E RIS++SGFA RLK+ SDP N+ NRRI+ILV+ +G Sbjct: 410 EKRISQVSGFADRRLKLPSDPFNATNRRIEILVQADRG 447 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 8/198 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D ++ G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGKNEIIIVKRHGGGDHDGSHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114 TK ++ YFNP K K D E + S+ K + D + + D Sbjct: 61 TKASVATYFNPIKLSDEKPTEKGLKKPVDNAEGEEKQEKSKQKEENPNDGKASADGDDQT 120 Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 S +Q + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAQDSGPATGADGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRKK 190 F P +++ K Sbjct: 181 PFDPDFWTKQVEVTTAGK 198 >gi|37525779|ref|NP_929123.1| flagellar motor protein MotB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785208|emb|CAE14143.1| chemotaxis protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 333 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMF 237 E + A ++L L +++ + ++ +L + G+ I IID+ N PMF Sbjct: 100 QVEVVEANDEARKLNRLREQLDQLIITDPRLKALRPHLLIDMMDEGLRIQIIDRENRPMF 159 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295 S+ +L+ I +L IS+ GHTD + N NW LS DRA ++ Sbjct: 160 MVGSAKVESYMSDILRAIAPILNDIPNKISLSGHTDDLKYANGERGYSNWELSADRANAS 219 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + L+ G+ E +I ++ G A D NRRI ILV ++Q Sbjct: 220 RRELLIGGLDEVKILRVVGMASTVRLKQEDASAPVNRRISILVLNKQA 267 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + + +I K+ + ++ GSWKI YADFMT +MAFFLVMW++ + I +Y Sbjct: 2 KTRNVSVIRVKRRKRNGIKHHGGSWKIAYADFMTAMMAFFLVMWLLAISSPQELTRIAEY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 F + + + D NP ++ + D Sbjct: 62 FRTPLQVAINKGERSSDSSNPIPGGGEDVLHQEGD 96 >gi|88859188|ref|ZP_01133829.1| flagellar motor protein [Pseudoalteromonas tunicata D2] gi|88819414|gb|EAR29228.1| flagellar motor protein [Pseudoalteromonas tunicata D2] Length = 290 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 121/314 (38%), Gaps = 38/314 (12%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 +AD M++LM FF+++ ++ D K I K F QN E Sbjct: 1 MGTFADLMSLLMCFFVLLLAMSEMDVLKFKQIAGSM-----------KFAFGVQNKLEVK 49 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 K I D T Q++ + + + + + ++S + + Sbjct: 50 DIPKGTSVIAMEFRPGKPDPSPIETIQQQTSEMTQQMLEFQAGDEESAGGRQEQRGNKRG 109 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G+ + + K + ++++ +L KKI+ L + D ++ Sbjct: 110 GESQSTAKSEAAASEKTAD----------------QEQVNELVKKIAQQLEEQIQDGAIE 153 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 E+ I+I I R F S+ P+ ++QKI ++L I++ GHTD Sbjct: 154 ---LESLGQQIIIRI---RENGSFPSGSAFLQPQFKPIIQKIADLLKDVPGEITVSGHTD 207 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS-- 329 N +NW LS R+ + + K SG ++R+ + G A R + ++ S Sbjct: 208 DYQVSNELYFNNWDLSAKRSVAVASEMQKVSGFDKNRMV-VIGHADTRPLVPNEDSESRK 266 Query: 330 ANRRIDILVEDRQG 343 NRR++I + + Sbjct: 267 RNRRVEISIMQGKA 280 >gi|85859043|ref|YP_461245.1| chemotaxis protein [Syntrophus aciditrophicus SB] gi|85722134|gb|ABC77077.1| chemotaxis protein [Syntrophus aciditrophicus SB] Length = 254 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +DL +I + + + V+ G+ I I+D+ + MF S+ P + +L Sbjct: 106 KDLEHRIKIAIDEKL-QTLKDQVMVSIVDNGLKIQIVDKEGSLMFPLGSAEPTFKAKEIL 164 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + + E L S I + GHTDA+PFR+ NW LS RA +A + L + + RI+++ Sbjct: 165 RIVSENLKDSPNRIIVEGHTDAAPFRSAQTTNWELSTARASAARRELENNSIDPGRIARV 224 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G+A L I +PM++ NRRI I+V + Sbjct: 225 IGYADQELFIPQNPMDARNRRISIIVIQPK 254 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + III+K ++ GSWK+ YADF+T +MAFFL++W+I + + A+ +Y Sbjct: 2 DDQQPVIIIRKVKKRHHDGHHGGSWKVAYADFVTAMMAFFLLLWLITMVSPEKRSAVAEY 61 Query: 69 FNPFGK 74 F F Sbjct: 62 FKTFSV 67 >gi|27381973|ref|NP_773502.1| flagellar motor protein MotB [Bradyrhizobium japonicum USDA 110] gi|27355143|dbj|BAC52127.1| motB [Bradyrhizobium japonicum USDA 110] Length = 445 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 8/297 (2%) Query: 53 IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112 + + ++D K + Y +PF + + + S D + Sbjct: 149 ALTSAEEDGLKGGDAYRDPFDPGYWKLAPQASKDSDRIIESEPKPNAPVRDNATGTGQGE 208 Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + + + N S S S S + + Sbjct: 209 PQARRSKTDDAGGSVAPNADASSASLSPLLPPGPAPAPSPSQSSREGSAQANAQSGAQAS 268 Query: 173 YF-------LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 P S+ + A ++ ++ L I+ LS + G+L Sbjct: 269 AAAQGRPGDTPKDSEPRDAAQTQQPTVKQLQSAIAEALSD-IKAGAGPAAEVRQVEEGLL 327 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +S+ D + MF S+ P PE I V+ KIG +L +I +RGHTD P+++ DNW Sbjct: 328 VSLTDDTSFGMFAVGSAEPRPELIRVIDKIGPLLMKRQGMIIVRGHTDNRPYKSETYDNW 387 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 RLS RA AY +L++SGV RI + G+A R K+ +DP + NRRI+IL+ +++ Sbjct: 388 RLSTARAQMAYYMLVRSGVDAQRIEHVEGYADRRPKLQNDPAAAQNRRIEILIREKR 444 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 8/191 (4%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + + +I++++ A + ++ G WKI YADFMT +MAFFLVMW++NA + D K+ + Sbjct: 2 EEVKQELVIVRRRSAFAEEAHHGGVWKIAYADFMTAMMAFFLVMWLLNALNQDQKQVVAS 61 Query: 68 YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFNP A KG+ D + + + + G + ++ Sbjct: 62 YFNPIKLAENAPAPKGLKDLS----KKEPTTFEGQDGRRQPAGPSEERRGDSPTAEKPPF 117 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEK---GKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 E + + NS + S + G D K + + F P K Sbjct: 118 YEEKVLFRDPYATLAEIANSANQASGQRRAGALTSAEEDGLKGGDAYRDPFDPGYWKLAP 177 Query: 184 LAMKRKKRLQD 194 A K R+ + Sbjct: 178 QASKDSDRIIE 188 >gi|222084880|ref|YP_002543409.1| chemotaxis motility protein [Agrobacterium radiobacter K84] gi|221722328|gb|ACM25484.1| chemotaxis motility protein [Agrobacterium radiobacter K84] Length = 452 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 2/288 (0%) Query: 56 ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 + + + + Q N K A++ ++ ++ D + S K Sbjct: 139 SVLAEIAQQVGQQANVSAKGEGGAAQSGPATGADGGQAYRDPFDPDFWTKQVQVSSASKK 198 Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 + Q + + + + + S +K +E Sbjct: 199 ANEEQAAKSDQSAKGEVIALSKATAADSGEPTDKPQTPEDQPTLSDQRQKGQGADEKISS 258 Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 SK+ +++ ++L + I + +SG VA + +GV + G+L++I DQ N P Sbjct: 259 ATQSKDIAPPKDQQQSAKELQQAIQAEISG-VAGQLAEGVQVASAEGGLLVTISDQSNDP 317 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYS 294 MF+ S++P E ++ + KIG++LA+ VI IRGHTD P+ DNWRLSLDRA S Sbjct: 318 MFNIGSAVPRREMVLAMGKIGKILANRKGVILIRGHTDGRPYMVGGHNDNWRLSLDRAQS 377 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 AY +L +G+ E RI ++SGFA RLK+ +DP N ANRRI+IL+ED + Sbjct: 378 AYYMLTSTGLDEKRIEQVSGFADRRLKLPNDPFNDANRRIEILIEDAK 425 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 10/216 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN GD+NQ + II+K+ A + + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MND-GDQNQGKHEIIIVKRHGANEHEGGHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 59 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TK ++ YFNP ++ + +N+ +E N K G Sbjct: 60 TKASVASYFNPIKLADEKPTEKGLKKPVDQADGKKNEAKSQNEETNPNNGKSAKTGEDQT 119 Query: 121 KKQYQR--------LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + EN L+ Q + +++ E G + Sbjct: 120 STSGDQTSYSEADFFENPYSVLAEIAQQVGQQANVSAKGEGGAAQSGPATGADGGQAYRD 179 Query: 173 YFLPPLSKEKI-LAMKRKKRLQDLAKKISSTLSGLV 207 F P +++ ++ KK ++ A K + G V Sbjct: 180 PFDPDFWTKQVQVSSASKKANEEQAAKSDQSAKGEV 215 >gi|213024875|ref|ZP_03339322.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 189 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + + + G+ I IID +N PMF S+ P +L+ I VL IS+ G Sbjct: 16 LRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAG 75 Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTD P+ N NW LS DRA ++ + L+ G+ ++ ++ G A P + Sbjct: 76 HTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDD 135 Query: 329 SANRRIDILVEDRQG 343 + NRRI +LV ++Q Sbjct: 136 AINRRISLLVLNKQA 150 >gi|253688988|ref|YP_003018178.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755566|gb|ACT13642.1| OmpA/MotB domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 350 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 4/204 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +LT S+ +++ + + + + RL L +++ + Sbjct: 65 KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLDQLI 124 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ +L E G+ I IID +N PMF S+ P +L+ I +L Sbjct: 125 EADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPILNDF 184 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319 +SI GHTD + NW LS DRA ++ + L+ G+S+ ++ ++ G A Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELIFGGLSDGKVLRVVGMAATMN 244 Query: 320 LKIASDPMNSANRRIDILVEDRQG 343 LK A+ ++ NRRI +LV RQ Sbjct: 245 LKQATGGNDAINRRISLLVLSRQA 268 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 70/177 (39%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ D +P + + + +++ + R + Sbjct: 62 TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLD 121 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ + + L ++G + + + K + + P ++ + A+ Sbjct: 122 QLIEADPRLRALRPHLLIEMIDEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178 >gi|332992377|gb|AEF02432.1| flagellar motor protein MotB [Alteromonas sp. SN2] Length = 309 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 119/325 (36%), Gaps = 39/325 (12%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ P L +W +AD M++LM FF+++ + D K I Sbjct: 1 MAEEECPKCPPEGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------- 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 K F QN E K I D T Q++ + + + + + Sbjct: 54 ----KFAFGVQNKIEVKDIPKGTSVIAMEFRPGRPDPSPIDTIQQQTIEMTQQMLEFQAG 109 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S + + G+ +TD S ++ + +L Sbjct: 110 DEDSSGGRQKQRGEQRGGQSQQTATDQSSSESQSSDQTQT----------------AELM 153 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KK++ L + D V+ E+ + I I R F S+ P+ +L+KIG Sbjct: 154 KKVAQQLQKQILDGAVE---LESLGQQLTIRI---RENGSFSAGSAFLQPQFQPILRKIG 207 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 +LA I I GH+D N + R NW LS RA + + + + G E R+ + G Sbjct: 208 VLLADVPGEIEISGHSDGQHIANELYRSNWDLSSQRAVAVAEAMRTAPGFDESRM-SVVG 266 Query: 315 FAHHRLKIASDPM---NSANRRIDI 336 A + + NRR++I Sbjct: 267 KADTDPMVEDATTPADRARNRRVEI 291 >gi|215485380|ref|YP_002327811.1| hypothetical protein E2348C_0225 [Escherichia coli O127:H6 str. E2348/69] gi|215263452|emb|CAS07773.1| flagellar system protein MbhA [Escherichia coli O127:H6 str. E2348/69] Length = 261 Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIVRDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KSNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|73532502|dbj|BAE19809.1| chemotaxis protein [Edwardsiella tarda] Length = 222 Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 +R RL+ L +++ + ++ ++ G+ I IID +N PMF S+ Sbjct: 1 RRAVRLKRLLQRLEQVIINDPRLKALRPHLMINMMDEGLRIQIIDSQNRPMFQNGSAQVE 60 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303 P +L+ I +L IS+ GHTD P+ N NW LS DRA ++ + L+ G Sbjct: 61 PYMRNILRAIAPILNELPNKISLSGHTDDLPYANGERGYSNWELSADRANASRRELIAGG 120 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ ++I ++ G A + NRRI ILV ++ Sbjct: 121 LAGNKILRVVGMADTMNLRNLAGNAAVNRRISILVLNKAA 160 >gi|304396266|ref|ZP_07378148.1| OmpA/MotB domain protein [Pantoea sp. aB] gi|304356635|gb|EFM21000.1| OmpA/MotB domain protein [Pantoea sp. aB] Length = 313 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 7/210 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK----RLQ 193 Q +++ K L G+ ST + + ++K + +++K RL Sbjct: 57 QIADYFKTPLKIAITGGQRSSDSTSPIPGGGDDPTKKIGEVNKVVDMDAQKRKLDEIRLN 116 Query: 194 DLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L +K+ + ++ ++ G+ I IID +N PMF + P +L Sbjct: 117 RLREKLDQLIEADPRLKTLRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDIL 176 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I +L IS+ GHTD + + NW LS DRA ++ + L+ G+ +I Sbjct: 177 RAIAPILNDIPNRISLAGHTDDFQYASGDKGYSNWELSADRANASRRELVIGGLDSGKIL 236 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ G A ++ NRRI +LV + Sbjct: 237 RVLGMADTMSLKNRGGNDAVNRRISLLVLN 266 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 3/192 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N ++IKK+ ++ GSWKI YADFMT +MAFF+VMW+++ + I Y Sbjct: 3 HGNRPIVLIKKRKHKGHEGSH-GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T + D +P + + + + K + R + Sbjct: 62 FKTPLKIAITGGQRSSDSTSPIPGGGDDPTKKIGEVNKVVDMDAQKRKLDEIRLNRLREK 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + ++ + + + E+G + + + K + P ++ + A+ Sbjct: 122 LDQLIEADPRLKTLRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIA- 180 Query: 189 KKRLQDLAKKIS 200 L D+ +IS Sbjct: 181 -PILNDIPNRIS 191 >gi|313902670|ref|ZP_07836069.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467108|gb|EFR62623.1| OmpA/MotB domain protein [Thermaerobacter subterraneus DSM 13965] Length = 364 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 120/312 (38%), Gaps = 46/312 (14%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YAD +T+L+AFF+VM+ ++ + +A+ TA + + D + Sbjct: 76 WLLTYADLITLLLAFFVVMYAMSEVNAARYQALAASLRA---AFATAGETLIDTEG---- 128 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 I+ ++ + G Q + + S Sbjct: 129 -------------ISPDARKVLDGLNRDTGQPYPPALPPAGSPEAPGEGSGEPSGEWPGL 175 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G S + +PP+S E ++R++ L ++++ L + Sbjct: 176 PGL---------PSPGQGAGTAVPPMSAE------ERERMEGLVERVNEALREA---GLG 217 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 T G+ I I D + FD + PE +L+++ +LA I + GHT Sbjct: 218 GRASARLTERGVAI-IFD--DQVFFDLGRAELRPEGRDLLRRLAPILAQVPGTILVEGHT 274 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD--PMN 328 D P R+ NW LS RA + + L ++G+ R++ +G+ R + + Sbjct: 275 DNLPIRSGRYPSNWELSTARATTVVRYLAEQAGLDPRRLAA-AGYGEWRPRYPNTSAANR 333 Query: 329 SANRRIDILVED 340 + NRR++I++ Sbjct: 334 ARNRRVEIVLLR 345 >gi|90579839|ref|ZP_01235647.1| flagellar motor protein [Vibrio angustum S14] gi|90438724|gb|EAS63907.1| flagellar motor protein [Vibrio angustum S14] Length = 307 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 119/327 (36%), Gaps = 57/327 (17%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81 W +AD T+LM FF+++ + D K I N N + Sbjct: 11 GAPPWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNMLEVNDIPKGT 70 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + ++ P R I++ + + I T+ S+D G +++ QR + + + Sbjct: 71 SVIAQEFRPGRPEPTPIEVIMQQTIDMTQRSLDFHEGESDRAGGTQRDAGKLTGGQSKKT 130 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + ++E + + L + + Sbjct: 131 ATQNNENDESEAE-------------------------------------QMQEKLKEVL 153 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L ++D I++ E ++I I R F + S+ P+ +++++ ++ Sbjct: 154 TKALEREISDKIIE---IENLGQQLVIRI---REKGSFPEGSAFLQPKFKPLVRQVAMLV 207 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 +I + GHT + + R NW LS RA S Q + K G ++ ++ G A Sbjct: 208 KDVPGIIRVTGHTASDKLDSELYRSNWDLSAQRAVSVAQEMEKVEGFDHTKM-RVVGLAD 266 Query: 318 HRLKIASDPMN--SANRRIDILVEDRQ 342 + + + NRR++I + + Sbjct: 267 TQPIADNKTQEGKAKNRRVEISIMQGK 293 >gi|300936146|ref|ZP_07151085.1| OmpA family protein [Escherichia coli MS 21-1] gi|300458724|gb|EFK22217.1| OmpA family protein [Escherichia coli MS 21-1] Length = 307 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|217976235|ref|YP_002360382.1| OmpA/MotB domain protein [Methylocella silvestris BL2] gi|217501611|gb|ACK49020.1| OmpA/MotB domain protein [Methylocella silvestris BL2] Length = 402 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 111/273 (40%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + F L + + P + VD + Sbjct: 125 SKLFRDPYAALAEIAANAIEAAPHPSSGEPQSGPTEFSVESSDVFVDPFTTAPRLADTTV 184 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + + ++ + +S + +E + K A Sbjct: 185 DGPASHAKPAIPERDKQAPSSPKQRAEPLPHAEEQLSPPAGAGKGTKTGDAATEAAMASA 244 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 L +++ + E T G+LIS+ D R MF S+ PL Sbjct: 245 QPMDTETASLKAGLTALAPQKGRFGDGPRIEVENTDEGLLISLTDDRKFSMFAIGSAAPL 304 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P+TI + KIG++L + ++ +RGHTDA PF++ DNWRLS RA+ A +L + G+ Sbjct: 305 PQTIEAMAKIGDLLKTRSGMVVVRGHTDARPFKSATYDNWRLSTARAHMAQYMLTRGGLD 364 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 E RI KI GFA HRLK+A++P +ANRRI+IL+ Sbjct: 365 EKRIEKIEGFADHRLKVAAEPTAAANRRIEILL 397 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 1/178 (0%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 ++ Q I+I K+ + DD + G+WKI +ADFMT +MA FLV+W+I++T D TK ++ QY Sbjct: 3 EKEHQEIVIVKRYSRDDEARHGGAWKIAFADFMTAMMALFLVLWLISSTSDKTKHSVAQY 62 Query: 69 FNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 FNP ++ T KG D + + + ID K+ + + + + + + + Sbjct: 63 FNPVKLVDMTTLKKGFRDPKKTEMGAGPKTTESEIDADSNKDLAETQEVAEHPGAKVRLI 122 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + + + + + + + + F+ P + LA Sbjct: 123 SESKLFRDPYAALAEIAANAIEAAPHPSSGEPQSGPTEFSVESSDVFVDPFTTAPRLA 180 >gi|326794296|ref|YP_004312116.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326545060|gb|ADZ90280.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 334 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 123/321 (38%), Gaps = 41/321 (12%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 + L ++ +AD M++LM FF+++ D K + Sbjct: 9 CPECIEGLPAYMGTFADLMSLLMCFFVLLLSFAEMDVLKFKQLAGSMR------------ 56 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + + I S+ + Q+ R E + + Sbjct: 57 ---------------EAFGVQKQIEAQSIPMGTSIIAQEFSPGRPEPTPINEVRQKADDR 101 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 +N+L + LCK E + + P +K A +++ ++ + Sbjct: 102 PENTL-------EVLCKPDTAELNEQEGAGQPSPSTFVDKSKADLEREKQIQQTEEDAQQ 154 Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 +S ++ + I KG V ET I I + D+ + F+ S+ + I V+ + EVL Sbjct: 155 ISSVMKEEISKGTVEVETQEQTITIRLKDKGS---FESGSAELNFDFIPVIDMVREVLIG 211 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 IS+ GHTD P + NW+LS R+ + + L +G + ++GFA R Sbjct: 212 VKGNISVEGHTDNIPIESRRFQSNWQLSSARSIAVAEELFATGALDQNRFSVTGFADTRP 271 Query: 321 KIASDP--MNSANRRIDILVE 339 + +D + NRR++I+++ Sbjct: 272 LVPNDTSANRATNRRVEIVIK 292 >gi|293403376|ref|ZP_06647467.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412] gi|298378988|ref|ZP_06988869.1| chemotaxis protein MotB [Escherichia coli FVEC1302] gi|291429229|gb|EFF02249.1| hypothetical protein ECGG_04086 [Escherichia coli FVEC1412] gi|298280101|gb|EFI21605.1| chemotaxis protein MotB [Escherichia coli FVEC1302] Length = 318 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 102 PPKPATVAVPEETEKKAHDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 278 Query: 338 VEDRQG 343 V + Sbjct: 279 VLTKSA 284 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ P + + + + V+ K + Sbjct: 72 ERESIIAALHG-QSIFNGGGLSPLNKIRPSHPPKPATVAVPEETEKKAHDVNEKTALLKK 130 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 190 Query: 181 EKILAMK 187 ++ + Sbjct: 191 TLLVELA 197 >gi|163749515|ref|ZP_02156763.1| flagellar motor protein [Shewanella benthica KT99] gi|161330924|gb|EDQ01851.1| flagellar motor protein [Shewanella benthica KT99] Length = 304 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 120/313 (38%), Gaps = 24/313 (7%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 +AD M++LM FF+++ + D K I K F QN E Sbjct: 1 MATFADLMSLLMCFFVLLLSFSEMDVMKFKQIAGSM-----------KYAFGVQNKVEVK 49 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 K I + ++ + E + Y + S + E+ Sbjct: 50 DIPKGTSVIALEFRPGRPEPTPIEIINQQTNEMTEPTLEYQAGDDDSSGGVQ--QQRGEQ 107 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 +T E++ K E+ +E ++ + D KK++ L+ + D ++ Sbjct: 108 RGGEASATAQEQAEAKAESVSQARAEEESKAQAAAQENINDQVKKMAQELNKEIVDGAIE 167 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 E+ I+I I R F S P V++++GE+L ++++ G TD Sbjct: 168 ---IESLGQQIIIRI---REKGAFSSGSGFLQPRFKPVIRRVGELLRDIPGIVTVSGFTD 221 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD--PMNS 329 N NW LS RA + L+K G ++R+ K+ G A+ + +D + Sbjct: 222 DMNISNELYSSNWDLSSKRAVAVAHELIKVRGFDQNRM-KVVGMANTNPLVDNDSASNRA 280 Query: 330 ANRRIDILVEDRQ 342 NRR++I +E + Sbjct: 281 RNRRVEIAIEQGK 293 >gi|328545495|ref|YP_004305604.1| flagellar motor protein MotB [polymorphum gilvum SL003B-26A1] gi|326415236|gb|ADZ72299.1| Flagellar motor protein MotB [Polymorphum gilvum SL003B-26A1] Length = 434 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 123/327 (37%), Gaps = 9/327 (2%) Query: 22 AIDDTPNN--LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + G ++ Y++ + ++ + + + FG Sbjct: 106 KPAGPARHSTGGEYRQFYSEAALFSDPYAVLDTLARSITLPEAEGPAPEKAGFGTREGEG 165 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 ++G D P + + + ++L + + E S+ Sbjct: 166 AQG-GDAYRDPFDPLYWQFLPNRGAGAAERPIELAMEPARTEAAEGMPEPRPEASPESRS 224 Query: 140 SEH---CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +E + D + P A L A Sbjct: 225 AEGVGKPAPPSPLVASVAPSPSAKPDPNAADAVASGVSAPQAPSAAAPASPEASDLAKTA 284 Query: 197 KKISSTLSGLVADNI---VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + + L GL + + E T G+LIS+ D ++ MF S+ P PE + +++ Sbjct: 285 AALQADLQGLAETPLGAAASRITVERTGAGLLISLTDDQDFGMFAVGSAEPRPELVRLME 344 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +IG L+ I IRGHTDA PFR+ DNWRLS RA+ A +L + GV R+ +I Sbjct: 345 RIGSTLSARPGRIVIRGHTDARPFRSKTYDNWRLSSARAHMALYMLARGGVDAGRVERIE 404 Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340 G+A LK SDP ++ NRRI+I + + Sbjct: 405 GYADRDLKRPSDPYSAVNRRIEIFLLE 431 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 84/216 (38%), Gaps = 3/216 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + +I++++ A D + G WKI +ADFMT +MAFFLVMW+IN TD++ ++ + QYF Sbjct: 6 SSGEIVIVRRRPAWDADHHKGGVWKIAFADFMTAMMAFFLVMWLINVTDENVRQGVAQYF 65 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 NP + ++ ++ + + D + ++N + + Q Sbjct: 66 NPVKLAATSPTRKGLNDAGESGDAIGEESDRPPAQGGSENKPAGPARHSTGGEYRQFYSE 125 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS---TDLEKSINKEENYFLPPLSKEKILAM 186 + + S+T +G K+ T + + Y P Sbjct: 126 AALFSDPYAVLDTLARSITLPEAEGPAPEKAGFGTREGEGAQGGDAYRDPFDPLYWQFLP 185 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 R + +++ + A + E + Sbjct: 186 NRGAGAAERPIELAMEPARTEAAEGMPEPRPEASPE 221 >gi|218703545|ref|YP_002411064.1| hypothetical protein ECUMN_0293 [Escherichia coli UMN026] gi|300899473|ref|ZP_07117721.1| OmpA family protein [Escherichia coli MS 198-1] gi|218430642|emb|CAR11508.1| flagellar system protein [Escherichia coli UMN026] gi|300356952|gb|EFJ72822.1| OmpA family protein [Escherichia coli MS 198-1] Length = 307 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKAHDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ P + + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKIRPSHPPKPATVAVPEETEKKAHDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|209745374|gb|ACI70994.1| putative motility protein [Escherichia coli] Length = 261 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVQIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|331645436|ref|ZP_08346540.1| putative motility protein [Escherichia coli M605] gi|331045598|gb|EGI17724.1| putative motility protein [Escherichia coli M605] Length = 318 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 102 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 278 Query: 338 VEDRQG 343 V + Sbjct: 279 VLTKSA 284 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 72 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 130 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 190 Query: 181 EKILAMK 187 ++ + Sbjct: 191 TLLVELA 197 >gi|170021342|ref|YP_001726296.1| hypothetical protein EcolC_3350 [Escherichia coli ATCC 8739] gi|188495907|ref|ZP_03003177.1| lateral flagellar motor protein B [Escherichia coli 53638] gi|169756270|gb|ACA78969.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739] gi|188491106|gb|EDU66209.1| lateral flagellar motor protein B [Escherichia coli 53638] Length = 307 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 3/205 (1%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 QS L+ ++ + E K +L K L +LA Sbjct: 72 QSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATS 131 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I++ + + E G+ + I D +N MF++ S+ +P +L ++ V Sbjct: 132 INTIARDAHMEA---NLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPV 188 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I I GHTDA ++N +NW LS DRA SA +VL ++G+ ED++ ++S A Sbjct: 189 FDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQ 248 Query: 319 RLKIASDPMNSANRRIDILVEDRQG 343 L A +P ++ NRRI+I+V + Sbjct: 249 MLLDAKNPQSAGNRRIEIMVLTKSA 273 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 78/188 (41%), Gaps = 3/188 (1%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASK-GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 +++I + G+++ + ++ +P + + + V+ K Sbjct: 61 ERESIIAALH--GQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLK 118 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 +K + E + ++ + N +G + D +++ + + + P Sbjct: 119 KKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFF 178 Query: 180 KEKILAMK 187 K ++ + Sbjct: 179 KTLLVELA 186 >gi|218528676|ref|YP_002419492.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|218520979|gb|ACK81564.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] Length = 462 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 4/259 (1%) Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 D + S + + I + S+ + K + + Sbjct: 199 LDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGVKLASAEPMPLTVPSAEPAKPSAE 258 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS----KEKILAMKRKKRLQDLAKKI 199 L +E + T L K+ P ++ L L +I Sbjct: 259 AAPLAPPAEAKPAPPEPTLLAKAEAPPAKELAPAKELAAPADQAAKAAETAALSALKAEI 318 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + L V T G+LISI D+ N MF S+ P P+ + L++I ++L Sbjct: 319 ARAVPSLPNGAPAPQVEVRRTGEGVLISITDEINYSMFGIGSAEPTPKVVKALERIAKIL 378 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + +RGHTD PFR+ DNWRLS RA A +L++ G+ E RI +I G+A + Sbjct: 379 NSRPGRVVVRGHTDGRPFRSETYDNWRLSSARAQMASYMLVRGGLDEARIDRIEGYADRQ 438 Query: 320 LKIASDPMNSANRRIDILV 338 +IA++P + NRRI+IL+ Sbjct: 439 PRIANNPKAAENRRIEILL 457 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 9/248 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YF Sbjct: 3 DRPHEIIIIKRHGDHEEGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP +T KG+ D Q+ P + + D + D ++ ++ + Sbjct: 63 NPVKLAEVTHDRKGVNDPQDTPNDPAPSGKGKG-DGGNAEGKGDATGAPGSRARESALFQ 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + L+ ++ + + F P + L +R Sbjct: 122 DPYAVLAKLAAEAEAAGPEAASADASALEAGQPGVAGG-ETGRDPFDPLYWQVAALPRRR 180 Query: 189 KKRLQDLAKKISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L S+ + A + + E+ + S+ D +S+ Sbjct: 181 TDNPGALDSAASAPAEARLDARAQTAGSKPREPQKESAKDIARQSLSDAMRQAGVKLASA 240 Query: 243 IPLPETIV 250 P+P T+ Sbjct: 241 EPMPLTVP 248 >gi|293408386|ref|ZP_06652225.1| conserved hypothetical protein [Escherichia coli B354] gi|291471564|gb|EFF14047.1| conserved hypothetical protein [Escherichia coli B354] Length = 307 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKARDLNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + ++ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDLNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|312964712|ref|ZP_07778963.1| lateral flagellar motor protein B [Escherichia coli 2362-75] gi|312290733|gb|EFR18611.1| lateral flagellar motor protein B [Escherichia coli 2362-75] Length = 254 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + + Sbjct: 38 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIVRDAHMEA---NLEM 94 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 95 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 154 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 155 KSNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 214 Query: 338 VEDRQG 343 V + Sbjct: 215 VLTKSA 220 >gi|325291956|ref|YP_004277820.1| flagellar motor protein MotB [Agrobacterium sp. H13-3] gi|27763656|gb|AAO20254.1| MotB [Agrobacterium sp. H13-3] gi|325059809|gb|ADY63500.1| flagellar motor protein MotB [Agrobacterium sp. H13-3] Length = 428 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 8/289 (2%) Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 I Q G D S D V + Q Sbjct: 141 LAEIAQQVGQQANVSAKGEGGAADSGPATGASGGEAYRDPFDPDFWTQQVKITRADQQQN 200 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 Q+ ++ +E ++ G D K+ ++ + ++ + Sbjct: 201 PVEQQQSAENKQQDPAKDNEAVAAKSSQQPVDGADHGKAMEIAAVVPQQRPGAAEQAALT 260 Query: 182 KILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + +K+ ++L ++I +SG ++ + +G++ G+L++I DQ T Sbjct: 261 QPQPEQQQQGTAAQKEEAKELREEIEKQISG-ISGKLAEGLVVTPAEGGLLLTISDQTET 319 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 PMF+ S++P E ++ ++KIG++L + IRGHTD F+ A DNWRLS+DRA+S Sbjct: 320 PMFNVGSAVPRGEMVLAMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHS 379 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 AY +L++ G+SE+R+ ++SGFA RL++ +DP+ +ANRRI+IL+E +G Sbjct: 380 AYYMLVRGGLSEERVKQVSGFADRRLQVPADPLANANRRIEILLEADRG 428 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 8/189 (4%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S G+ + III K+ + G+WKI YADFMT +MAFFLVMW++NA +++TK Sbjct: 2 SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61 Query: 63 KAIEQYFNPFG----KNLMTASKGIFDEQNPPERSSQNKIDLS----IDEHITKNSVDLK 114 ++ YFNP K + D++ E+ Q+ I T + + Sbjct: 62 ASVASYFNPIKLSDEKPSSKGLEKPVDKEEGVEKKDQSNIKAEKVTQGSAAATGEDLTSQ 121 Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 G + + EN L+ Q + +++ E G + F Sbjct: 122 TGEQSNFSEADFFENPYSVLAEIAQQVGQQANVSAKGEGGAADSGPATGASGGEAYRDPF 181 Query: 175 LPPLSKEKI 183 P +++ Sbjct: 182 DPDFWTQQV 190 >gi|331671822|ref|ZP_08372618.1| putative motility protein [Escherichia coli TA280] gi|331070811|gb|EGI42170.1| putative motility protein [Escherichia coli TA280] Length = 318 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 102 PSKPATVAVPEETEKKARDLNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 278 Query: 338 VEDRQG 343 V + Sbjct: 279 VLTKSA 284 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 75/187 (40%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P S + + + ++ K + Sbjct: 72 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPSKPATVAVPEETEKKARDLNEKTALLKK 130 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 190 Query: 181 EKILAMK 187 ++ + Sbjct: 191 TLLVELA 197 >gi|300817251|ref|ZP_07097469.1| OmpA family protein [Escherichia coli MS 107-1] gi|307313501|ref|ZP_07593122.1| OmpA/MotB domain protein [Escherichia coli W] gi|300530227|gb|EFK51289.1| OmpA family protein [Escherichia coli MS 107-1] gi|306906669|gb|EFN37180.1| OmpA/MotB domain protein [Escherichia coli W] gi|323181565|gb|EFZ66985.1| lateral flagellar motor protein B [Escherichia coli 1357] gi|323379881|gb|ADX52149.1| OmpA/MotB domain protein [Escherichia coli KO11] Length = 307 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 88 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|91209318|ref|YP_539304.1| hypothetical protein UTI89_C0270 [Escherichia coli UTI89] gi|91070892|gb|ABE05773.1| putative motility protein MbhA [Escherichia coli UTI89] Length = 262 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + E K +L K L +LA I++ + + E Sbjct: 47 PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 103 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+ + I D +N MF++ S+ +P +L ++ VL I I GHTDA ++ Sbjct: 104 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 163 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N +NW LS DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 164 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 223 Query: 339 EDRQG 343 + Sbjct: 224 LTKSA 228 >gi|323963541|gb|EGB59099.1| OmpA family protein [Escherichia coli H489] gi|323972411|gb|EGB67618.1| OmpA family protein [Escherichia coli TA007] Length = 261 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 42 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N DNW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 162 KNNIYDNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|309786020|ref|ZP_07680649.1| lateral flagellar motor protein B [Shigella dysenteriae 1617] gi|308926131|gb|EFP71609.1| lateral flagellar motor protein B [Shigella dysenteriae 1617] Length = 307 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKSRDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKSRDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|239781764|pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From Salmonella (Crystal Form I) Length = 210 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 5 TQQQGEVEKQPNIDELKKRXEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 64 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDN 284 IID +N P F S+ P +L+ I VL IS+ GHTD P+ N N Sbjct: 65 QIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSN 124 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 W LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 125 WELSADRANASRRELVAGGLDNGKVLRVVGXAATXRLSDRGPDDAINRRISLLVLNKQA 183 >gi|117622532|ref|YP_851445.1| hypothetical protein APECO1_1739 [Escherichia coli APEC O1] gi|237707752|ref|ZP_04538233.1| MbhA protein [Escherichia sp. 3_2_53FAA] gi|115511656|gb|ABI99730.1| putative motility protein MbhA [Escherichia coli APEC O1] gi|226898962|gb|EEH85221.1| MbhA protein [Escherichia sp. 3_2_53FAA] gi|323958690|gb|EGB54391.1| OmpA family protein [Escherichia coli H263] Length = 261 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + E K +L K L +LA I++ + + E Sbjct: 46 PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 102 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+ + I D +N MF++ S+ +P +L ++ VL I I GHTDA ++ Sbjct: 103 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 162 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N +NW LS DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 163 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 222 Query: 339 EDRQG 343 + Sbjct: 223 LTKSA 227 >gi|331640759|ref|ZP_08341894.1| putative motility protein [Escherichia coli H736] gi|331037557|gb|EGI09777.1| putative motility protein [Escherichia coli H736] Length = 318 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 102 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 158 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 159 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 218 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 219 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 278 Query: 338 VEDRQG 343 V + Sbjct: 279 VLTKSA 284 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 73/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 12 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 71 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 72 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 130 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 131 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 190 Query: 181 EKILAMK 187 ++ + Sbjct: 191 TLLVELA 197 >gi|323171084|gb|EFZ56733.1| lateral flagellar motor protein B [Escherichia coli LT-68] Length = 307 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|170681840|ref|YP_001742391.1| hypothetical protein EcSMS35_0284 [Escherichia coli SMS-3-5] gi|170519558|gb|ACB17736.1| lateral flagellar motor protein B [Escherichia coli SMS-3-5] Length = 307 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 75/187 (40%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P S + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPSKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|309700460|emb|CBI99754.1| lateral flagellar motor protein B (MotB-like) [Escherichia coli ETEC H10407] Length = 296 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 77 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 136 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 137 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 196 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N DNW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 197 KNNIYDNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 256 Query: 338 VEDRQG 343 V + Sbjct: 257 VLTKSA 262 >gi|323976251|gb|EGB71344.1| OmpA family protein [Escherichia coli TW10509] gi|327254574|gb|EGE66190.1| lateral flagellar motor protein B [Escherichia coli STEC_7v] Length = 307 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 101 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 157 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA +++ +NW L Sbjct: 158 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNL 217 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL +G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 218 SGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 273 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPTHPLKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|301643541|ref|ZP_07243583.1| OmpA family protein [Escherichia coli MS 146-1] gi|307136895|ref|ZP_07496251.1| hypothetical protein EcolH7_02026 [Escherichia coli H736] gi|301078041|gb|EFK92847.1| OmpA family protein [Escherichia coli MS 146-1] gi|315616807|gb|EFU97424.1| lateral flagellar motor protein B [Escherichia coli 3431] Length = 307 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 73/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRDRGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|328542461|ref|YP_004302570.1| OmpA family protein [polymorphum gilvum SL003B-26A1] gi|326412208|gb|ADZ69271.1| OmpA family protein [Polymorphum gilvum SL003B-26A1] Length = 283 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 113/321 (35%), Gaps = 51/321 (15%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + W + +AD M++L+ FF+++ + D + + + Sbjct: 2 AKKKQQSSGAPEWLVTFADLMSLLVCFFVLIISFSIQDREKMQVVAGSMR---------- 51 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 D + ++ + ++I + + + L + + Sbjct: 52 ------------------DAFGVKESSRRTGIIEIEGIPIRDYMKHVTQVPQELDSDFAA 93 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E + + E D+EKS A ++ Q++ + Sbjct: 94 ERHEKKSKQGPEANTHDTVEADIEKSRQF------------ATAAASLRQAFQEMPE--- 138 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 I ++ E T G+ I I+DQ MF + S P T +L K+ VLA Sbjct: 139 -------ITEISSNIIMEETEEGLNILIVDQDGRSMFREGSKYPYETTRRLLAKMAPVLA 191 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHT + + W LS DRA A +L + G+ D+I + G A Sbjct: 192 EMPNRIQITGHTTTGGTTADPSYTGWELSSDRANIARMILTEYGIPADQIHSVVGKADSE 251 Query: 320 LKIASDPMNSANRRIDILVED 340 +DP +ANRRI IL+ Sbjct: 252 PLFPNDPFLAANRRIGILLMS 272 >gi|163735541|ref|ZP_02142973.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149] gi|161391161|gb|EDQ15498.1| chemotaxis protein MotB, putative [Roseobacter litoralis Och 149] Length = 279 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 59/333 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N +IIKKK + ++ G+WK+ YADF+T +MAFF++MW++NAT + + + Y Sbjct: 4 QSNLAPVIIKKKKKVVGGGHHGGAWKVAYADFVTAMMAFFMMMWLLNATTEQQRAGLADY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F P P R S + I + G Sbjct: 64 FAP---------------TIPINRISGGGDGAFGGDSIFSEETLPQNGL----------- 97 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ + + G+ S E+ + EE Sbjct: 98 -----------GATSQHATRKKAASGESGNDSDGGEQDSSDEE----------------- 129 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 LQ L +++ V +N ++ ++ T G++I + P+F +S P P Sbjct: 130 ---LQALIEELMGRGGESTVMENALEHIVTRITDEGLVIELFALDGQPLFQPNSDDPTPL 186 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +++ + V +T I+I H + P W +S DRA +L ++G+ + Sbjct: 187 MTQLVELVASVAFAATNNIAIGAHVPSRPIVVAQNPVWDVSTDRATRTRLMLQENGLEPE 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G A + +PM + N R++I++ Sbjct: 247 RMHRVTGHADREP-VHLNPMATRNSRVEIVLLR 278 >gi|260853484|ref|YP_003227375.1| putative lateral flagellar motor protein [Escherichia coli O26:H11 str. 11368] gi|260866430|ref|YP_003232832.1| putative lateral flagellar motor protein [Escherichia coli O111:H- str. 11128] gi|257752133|dbj|BAI23635.1| predicted lateral flagellar motor protein [Escherichia coli O26:H11 str. 11368] gi|257762786|dbj|BAI34281.1| predicted lateral flagellar motor protein [Escherichia coli O111:H- str. 11128] gi|323158085|gb|EFZ44184.1| lateral flagellar motor protein B [Escherichia coli EPECa14] gi|323178474|gb|EFZ64052.1| lateral flagellar motor protein B [Escherichia coli 1180] Length = 307 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 TLLVELA 186 >gi|82775833|ref|YP_402180.1| hypothetical protein SDY_0484 [Shigella dysenteriae Sd197] gi|81239981|gb|ABB60691.1| putative motility protein [Shigella dysenteriae Sd197] Length = 259 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 43 PPKPATVAVPEETEKKSRDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 99 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 100 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 159 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 160 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 219 Query: 338 VEDRQG 343 V + Sbjct: 220 VLTKSA 225 >gi|256020246|ref|ZP_05434111.1| hypothetical protein ShiD9_15115 [Shigella sp. D9] gi|332281408|ref|ZP_08393821.1| flagellar motor region [Shigella sp. D9] gi|332103760|gb|EGJ07106.1| flagellar motor region [Shigella sp. D9] Length = 307 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 90/186 (48%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 88 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P ++L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKMLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSITTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 MLLVELA 186 >gi|260842477|ref|YP_003220255.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009] gi|257757624|dbj|BAI29121.1| flagellar system protein MbhA [Escherichia coli O103:H2 str. 12009] Length = 261 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 42 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|83648502|ref|YP_436937.1| flagellar motor protein MotB [Hahella chejuensis KCTC 2396] gi|83636545|gb|ABC32512.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 326 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 117/318 (36%), Gaps = 43/318 (13%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + P L +W +AD M++LM FF+++ + D K + + G+ Sbjct: 10 ECPPGLPAWMATFADLMSLLMCFFVLLLSFSEMDALKFKRLAGSMR--------EAFGVQ 61 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 N I + L+ QQ+E Sbjct: 62 AIVNVDSIPKGTSIIAQEFSPGKPDPTPLQTIM--------------------QQTEMDL 101 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +L + E+ + K +E + + L K K+L + + LA + S + Sbjct: 102 PNLEQLCEQQVADALQEECPKVQGEELSDIV--LEKIKMLVEETENDAITLASALESEVR 159 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 V ET I+I + + F S+ PE V+ K+ E+L Sbjct: 160 N-------NQVEVETRGRKIVIRV---QEKGSFSSGSADLNPEFYPVIDKLVELLKSMEG 209 Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 IS+ GH+D+ P R R NW LS RA L +SG E I+G+A + Sbjct: 210 SISVEGHSDSIPIRTARFRSNWDLSAARALEVAHALFESGELEPSRFSIAGYADTKPLAP 269 Query: 324 SD--PMNSANRRIDILVE 339 +D + NRR++I+++ Sbjct: 270 NDSAENRARNRRVEIILQ 287 >gi|115524590|ref|YP_781501.1| OmpA/MotB [Rhodopseudomonas palustris BisA53] gi|115518537|gb|ABJ06521.1| OmpA/MotB [Rhodopseudomonas palustris BisA53] Length = 280 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 64/314 (20%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQN 88 W + +AD M +L++FF+++ + D + + + FG I + Sbjct: 17 GHGWFVTFADLMALLVSFFVMLVSFSHQDQVKLQIVAGSMRDAFGVQKDARYSAIVETDG 76 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P R + +D E T + G + + E Sbjct: 77 VPVRGNVKNVDRVAAEQSTPFPSPDEGGGMAKTGAQIQAEREF----------------- 119 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + ++ LQD+ + Sbjct: 120 ---------------------------------ALASASLRQALQDMPE----------I 136 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + K V+FE T+ G+ + I+DQ PMF + S +P T ++++++ L ++ I++ Sbjct: 137 AEVSKNVMFEETKEGLNLQIVDQDGRPMFPEGSPVPFQRTKLLIERLAAPLRATSLRITL 196 Query: 269 RGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 GHT ++ P R+ A D + LS RA + Q+L + G+ + ++G A DP Sbjct: 197 VGHTSSAVLPGRSDA-DGFDLSWQRANAVRQILKREGLPIANVLSVTGKADSEPLFPDDP 255 Query: 327 MNSANRRIDILVED 340 M +ANRR+ I + Sbjct: 256 MLAANRRVTITLLR 269 >gi|281177445|dbj|BAI53775.1| putative motility protein [Escherichia coli SE15] Length = 262 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 46 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 102 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 103 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 162 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 163 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 222 Query: 338 VEDRQG 343 V + Sbjct: 223 VLTKSA 228 >gi|213416605|ref|ZP_03349749.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 170 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + + G+ I IID +N PMF S+ P +L+ I VL IS+ GHTD Sbjct: 1 MKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDD 60 Query: 275 SPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 P+ N NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NR Sbjct: 61 FPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINR 120 Query: 333 RIDILVEDRQG 343 RI +LV ++Q Sbjct: 121 RISLLVLNKQA 131 >gi|320643247|gb|EFX12446.1| hypothetical protein ECO9389_21954 [Escherichia coli O157:H- str. 493-89] gi|320648894|gb|EFX17512.1| hypothetical protein ECO2687_10031 [Escherichia coli O157:H- str. H 2687] Length = 256 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ ++ + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIAR---DAHMEANLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVQIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|15799935|ref|NP_285947.1| hypothetical protein Z0291 [Escherichia coli O157:H7 EDL933] gi|15829511|ref|NP_308284.1| hypothetical protein ECs0256 [Escherichia coli O157:H7 str. Sakai] gi|291281074|ref|YP_003497892.1| putative motility protein [Escherichia coli O55:H7 str. CB9615] gi|293413506|ref|ZP_06656155.1| hypothetical protein ECDG_00047 [Escherichia coli B185] gi|331651164|ref|ZP_08352189.1| putative motility protein [Escherichia coli M718] gi|12513001|gb|AAG54555.1|AE005201_8 putative motility protein [Escherichia coli O157:H7 str. EDL933] gi|13359714|dbj|BAB33680.1| putative motility protein [Escherichia coli O157:H7 str. Sakai] gi|209745376|gb|ACI70995.1| putative motility protein [Escherichia coli] gi|209745378|gb|ACI70996.1| putative motility protein [Escherichia coli] gi|209745380|gb|ACI70997.1| putative motility protein [Escherichia coli] gi|209745382|gb|ACI70998.1| putative motility protein [Escherichia coli] gi|290760946|gb|ADD54907.1| Putative motility protein [Escherichia coli O55:H7 str. CB9615] gi|291433564|gb|EFF06537.1| hypothetical protein ECDG_00047 [Escherichia coli B185] gi|323938776|gb|EGB35022.1| OmpA family protein [Escherichia coli E1520] gi|331050905|gb|EGI22957.1| putative motility protein [Escherichia coli M718] Length = 261 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|331661626|ref|ZP_08362549.1| putative motility protein [Escherichia coli TA143] gi|331060048|gb|EGI32012.1| putative motility protein [Escherichia coli TA143] Length = 261 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|331666564|ref|ZP_08367438.1| putative motility protein [Escherichia coli TA271] gi|331065788|gb|EGI37672.1| putative motility protein [Escherichia coli TA271] Length = 307 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 91 PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 147 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 148 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 207 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 208 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 267 Query: 338 VEDRQG 343 V + Sbjct: 268 VLTKSA 273 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 74/187 (39%), Gaps = 1/187 (0%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M G++ + + I+++++ + ++ G+WK+ +ADF +MA F+ +WI+N+ Sbjct: 1 MRKTGNRRERGAKTTIVRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKS 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++I + ++ +P + + + V+ K + Sbjct: 61 ERESIIAALHG-QSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTVLLKK 119 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K + E + ++ + N +G + D +++ + + + P K Sbjct: 120 KSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFK 179 Query: 181 EKILAMK 187 ++ + Sbjct: 180 RLLVELA 186 >gi|74310872|ref|YP_309292.1| hypothetical protein SSON_0272 [Shigella sonnei Ss046] gi|293418347|ref|ZP_06660782.1| chemotaxis protein MotB [Escherichia coli B088] gi|73854349|gb|AAZ87056.1| putative motility protein [Shigella sonnei Ss046] gi|291324875|gb|EFE64290.1| chemotaxis protein MotB [Escherichia coli B088] Length = 261 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 42 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|194438259|ref|ZP_03070351.1| putative chemotaxis protein [Escherichia coli 101-1] gi|297521341|ref|ZP_06939727.1| hypothetical protein EcolOP_27134 [Escherichia coli OP50] gi|194422923|gb|EDX38918.1| putative chemotaxis protein [Escherichia coli 101-1] Length = 256 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 37 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N DNW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYDNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|218557186|ref|YP_002390099.1| hypothetical protein ECS88_0265 [Escherichia coli S88] gi|218363955|emb|CAR01620.1| flagellar system protein [Escherichia coli S88] Length = 296 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + E K +L K L +LA I++ + + E Sbjct: 81 PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 137 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+ + I D +N MF++ S+ +P +L ++ VL I I GHTDA ++ Sbjct: 138 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 197 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N +NW LS DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 198 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257 Query: 339 EDRQG 343 + Sbjct: 258 LTKSA 262 >gi|308187234|ref|YP_003931365.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans C9-1] gi|308057744|gb|ADO09916.1| Chemotaxis protein motB (Motility protein B) [Pantoea vagans C9-1] Length = 313 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 191 RLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL L +K+ + ++ ++ G+ I IID +N PMF + P Sbjct: 114 RLNRLREKLDQMIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMR 173 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+ I +L IS+ GHTD + NW LS DRA ++ + L+ G+ Sbjct: 174 DILRAIAPILNDIPNRISLAGHTDDFQYAGGDKGYSNWELSTDRANASRRELVMGGLDSG 233 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ ++ G A ++ NRRI +LV + Sbjct: 234 KVLRVLGMADTMRLKNRGGNDAVNRRISLLVLN 266 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 3/192 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 N ++IKK+ ++ GSWKI YADFMT +MAFF+VMW+++ + I Y Sbjct: 3 HGNRPIVLIKKRKHKGHEGSH-GSWKIAYADFMTAMMAFFMVMWLLSIANPQELVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T D +P + + + + K + R + Sbjct: 62 FKTPLKVAITGGARSSDSDSPIPGGGDDPTKKIGEVNKVVDMDAQKRKLDEIRLNRLREK 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + ++ + + + E+G + + + K + P ++ + A+ Sbjct: 122 LDQMIEADPRLKALRPHLIINMVEEGLRIQIIDSQNRPMFKTGRAEVEPYMRDILRAIA- 180 Query: 189 KKRLQDLAKKIS 200 L D+ +IS Sbjct: 181 -PILNDIPNRIS 191 >gi|188533603|ref|YP_001907400.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99] gi|188028645|emb|CAO96507.1| Chemotaxis protein [Erwinia tasmaniensis Et1/99] Length = 343 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 7/210 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK----RLQ 193 Q +++ K L G+ S+ ++ + + K + ++++K RL Sbjct: 57 QIADYFKTPLKVAITGGQRSSDSSSPIPGGGQDPTEKIGEVRKGFDMNVQKRKLDEVRLN 116 Query: 194 DLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + + + ++ ++ G+ I IID +N PMF S+ +L Sbjct: 117 RLRENLDQLIEADPKLRALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVESYMRDIL 176 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I +L IS+ GHTD P+ NW LS DRA ++ + L+ G+S ++ Sbjct: 177 RAIAPILNQIPNRISMAGHTDDFPYAGGERGYSNWELSADRANASRRELVAGGLSSGKML 236 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 ++ G + ++ NRRI +LV + Sbjct: 237 RVVGMSDTMKLKNRGANDAVNRRISLLVLN 266 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 2/194 (1%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 + ND+ I++ K+ + + GSWKI YADFMT +MAFFLVMW+I+ + I Y Sbjct: 2 KHNDRPIVLVKRKKANKHSGSHGSWKIAYADFMTAMMAFFLVMWLISISSPQQLVQIADY 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F K +T + D +P Q+ + + + K + R Sbjct: 62 FKTPLKVAITGGQRSSDSSSPIPGGGQDPTEKIGEVRKGFDMNVQKRKLDEVRLNRLREN 121 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + ++ + + + E+G + + + K + + ++ + A+ Sbjct: 122 LDQLIEADPKLRALRPHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVESYMRDILRAIA- 180 Query: 189 KKRLQDLAKKISST 202 L + +IS Sbjct: 181 -PILNQIPNRISMA 193 >gi|294491414|gb|ADE90170.1| putative chemotaxis protein [Escherichia coli IHE3034] gi|307628268|gb|ADN72572.1| hypothetical protein UM146_16065 [Escherichia coli UM146] gi|323953128|gb|EGB48996.1| OmpA family protein [Escherichia coli H252] Length = 256 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + E K +L K L +LA I++ + + E Sbjct: 41 PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 97 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+ + I D +N MF++ S+ +P +L ++ VL I I GHTDA ++ Sbjct: 98 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYK 157 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N +NW LS DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+V Sbjct: 158 NNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 217 Query: 339 EDRQG 343 + Sbjct: 218 LTKSA 222 >gi|26246276|ref|NP_752315.1| hypothetical protein c0378 [Escherichia coli CFT073] gi|26106674|gb|AAN78859.1|AE016756_42 MbhA protein [Escherichia coli CFT073] Length = 262 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 46 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 102 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 103 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 162 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 163 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 222 Query: 338 VEDRQG 343 V + Sbjct: 223 VLTKSA 228 >gi|89073143|ref|ZP_01159682.1| flagellar motor protein [Photobacterium sp. SKA34] gi|89051096|gb|EAR56553.1| flagellar motor protein [Photobacterium sp. SKA34] Length = 307 Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 119/327 (36%), Gaps = 57/327 (17%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASK 81 W +AD T+LM FF+++ + D K I N N + Sbjct: 11 GAPPWMATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNMLEVNDIPKGT 70 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + ++ P R I++ + + I T+ S+D G +++ QR + Q Sbjct: 71 SVIAQEFRPGRPEPTPIEVIMQQTIDMTQRSLDFHEGESDRAGGTQRDAGKLTGG----Q 126 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S+ + E D + + L + + Sbjct: 127 SKKTATQNNENDESEAD---------------------------------QMQEKLKEVL 153 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L ++D I++ E ++I I R F + S+ P+ +++++ ++ Sbjct: 154 TKALEREISDKIIE---IENLGQQLVIRI---REKGSFPEGSAFLQPKFKPLVRQVAMLV 207 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAH 317 +I + GHT + + R NW LS RA S Q + K G ++ ++ G A Sbjct: 208 KDVPGIIRVTGHTASDKLDSELYRSNWDLSAQRAVSVAQEMEKVEGFDHTKM-RVIGLAD 266 Query: 318 HRLKIASDPMN--SANRRIDILVEDRQ 342 + + + + NRR++I + + Sbjct: 267 TQPIADNKTQDGKAKNRRVEISIIQGK 293 >gi|331656310|ref|ZP_08357272.1| MbhA protein [Escherichia coli TA206] gi|331054558|gb|EGI26567.1| MbhA protein [Escherichia coli TA206] Length = 261 Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|324115583|gb|EGC09522.1| OmpA family protein [Escherichia coli E1167] Length = 261 Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|260450574|gb|ACX40996.1| OmpA/MotB domain protein [Escherichia coli DH1] gi|323943350|gb|EGB39503.1| OmpA family protein [Escherichia coli E482] Length = 261 Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|193063256|ref|ZP_03044347.1| putative chemotaxis protein [Escherichia coli E22] gi|192931164|gb|EDV83767.1| putative chemotaxis protein [Escherichia coli E22] gi|323160305|gb|EFZ46258.1| lateral flagellar motor protein B [Escherichia coli E128010] Length = 256 Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 37 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|50120622|ref|YP_049789.1| flagellar motor protein [Pectobacterium atrosepticum SCRI1043] gi|49611148|emb|CAG74594.1| chemotaxis protein [Pectobacterium atrosepticum SCRI1043] Length = 351 Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 4/204 (1%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +LT S+ +++ + + + + RL L +++ + Sbjct: 65 KVALTSGSKSSDSSSPIPGGGNDPTQQDGEVRKAIKTDNVEKKLDEVRLNRLRERLDQLI 124 Query: 204 SGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ +L E G+ I IID +N PMF S+ P +L+ I ++ Sbjct: 125 EADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIAPIMNDF 184 Query: 263 TEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR- 319 +SI GHTD + NW LS DRA ++ + L+ G+S+ ++ ++ G A Sbjct: 185 PNKLSISGHTDDVQYTTGERGYSNWELSADRANASRRELIWGGLSDGKVLRVVGMAATMS 244 Query: 320 LKIASDPMNSANRRIDILVEDRQG 343 LK A+ ++ NRRI +LV RQ Sbjct: 245 LKQAASGNDAINRRISLLVLSRQA 268 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 70/177 (39%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ D +P + + + +++ + R + Sbjct: 62 TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVRKAIKTDNVEKKLDEVRLNRLRERLD 121 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 ++ + + L E+G + + + K + + P ++ + A+ Sbjct: 122 QLIEADPRLRALRPHLLIEMIEEGLRIQIIDSQNRPMFKTGSAQVEPYMRDILRAIA 178 >gi|241203119|ref|YP_002974215.1| flagellar motor protein MotB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857009|gb|ACS54676.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 443 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 12/279 (4%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 E Y +PF + T + P P S ++ S I K I T +K Sbjct: 176 EAYRDPFDPDFWTKQVEVTTAGKPLPPGKSDDQAVESETTEIAKLEDAKPIPLTTDQKAA 235 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 Q + + + +K + K D +K +K KE Sbjct: 236 QETKETKETKGAVEAKDGKTPGGKSPEDKKAEAQKDADHQKDADKSAAETEQQQQKEAEQ 295 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + G VA + +G+ + G+L+SI DQ + MF+ S++P Sbjct: 296 LQAQI-----------AQQIGGVAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVP 344 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 E ++ ++KIG +L +++RGHTD ++ +NWRLS+DRA SAY +L++ G+ Sbjct: 345 RQEMVLAMEKIGAILKERGGAVAVRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGL 404 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 E RIS++SGFA RLK+ SDP N+ NRRI+ILV+ QG Sbjct: 405 DEKRISQVSGFADRRLKLPSDPFNATNRRIEILVQADQG 443 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGKNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG----KNLMTASKGIFD--EQNPPERSSQNKIDLSIDEHITKNSVDLK 114 TK ++ YFNP K K D E + S+ K + D + D Sbjct: 61 TKASVATYFNPIKLSDEKPTEKGLKKPVDNAEGEEKQEKSKQKEEDPNDGKAAADGDDQT 120 Query: 115 IGSTNQK--KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 S +Q + EN L+ Q + +++ + G + Sbjct: 121 STSGDQTNYSEADFFENPYSVLAEIAQEVGQQANVSAKGDGGAADSGPATGADGGEAYRD 180 Query: 173 YFLPPLSKEKILAMKRKKRL 192 F P +++ K L Sbjct: 181 PFDPDFWTKQVEVTTAGKPL 200 >gi|260466608|ref|ZP_05812796.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] gi|259029614|gb|EEW30902.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] Length = 466 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 2/267 (0%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + D P +++++ ++ D + + + + Sbjct: 197 PGAEASAQRPRIEGDPVKPGDKAAETQVAKVKAVPPAPPLKDAPLEPLAKDAAATMAKAS 256 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 +++ S+ ++ + K+ S + P + EK K Sbjct: 257 DIKAGDTKASDTKASNAKAGEGNAAEAAKADATLASREAAKPEAAKPEAAEKAPTAAALK 316 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 D+ ++++ D + GV E T G++ISI D+ + MF+ S++P E ++ Sbjct: 317 AAADVKRQLADAFKP--GDKLHDGVSVEATDKGVVISITDRLDFGMFEVGSALPSRELVL 374 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++KIG ++ ISI GHTDA PFR+ + DNWRLS RA+SAY +L++ GV E RI+ Sbjct: 375 AMEKIGRIVNSQKGTISINGHTDARPFRSDSYDNWRLSTARAHSAYYMLVRGGVDERRIT 434 Query: 311 KISGFAHHRLKIASDPMNSANRRIDIL 337 +++GFA + K +DPM + NRRI+IL Sbjct: 435 EVAGFADRQPKDPADPMAAVNRRIEIL 461 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 12/203 (5%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S + + + II++ D ++ G WKI +ADFMT +M FFLVMW+INA ++ TK Sbjct: 2 SVAEADHGRHEIIIVRHAHGDHDEGHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTK 61 Query: 63 KAIEQYFNPFG-KNLMTASKGIFD-----------EQNPPERSSQNKIDLSIDEHITKNS 110 A+ YFNP + ++ KG+ D ++P + + ++ D + ++ Sbjct: 62 AAVASYFNPVKLVDRNSSRKGLEDLGDGPNAIGATAESPQQATGKSGQDGTGGAGTSERK 121 Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 D + +++ + LS ++++ + G Sbjct: 122 QDKQEQQQSERSDEHLFADPYAVLSEIATDTGVMQNVSQKGDGGAQSAGPATGASGGASY 181 Query: 171 ENYFLPPLSKEKILAMKRKKRLQ 193 + F P +++ A + Q Sbjct: 182 RDPFEPDFWSQQVAAPGAEASAQ 204 >gi|209917443|ref|YP_002291527.1| hypothetical protein ECSE_0251 [Escherichia coli SE11] gi|209910702|dbj|BAG75776.1| putative motility protein [Escherichia coli SE11] Length = 262 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 46 PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 102 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 103 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 162 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 163 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 222 Query: 338 VEDRQG 343 V + Sbjct: 223 VLTKSA 228 >gi|238796916|ref|ZP_04640420.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969] gi|238719176|gb|EEQ10988.1| Flagellar motor protein [Yersinia mollaretii ATCC 43969] Length = 320 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 8/219 (3%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L Q +++ K L G S + + K+ + M ++ Sbjct: 16 SSTPLQREQIADYFKMPLKLAMSHGDKSSVSDSPIPGGGDDLMKQDGEVLKQTLAKMDKQ 75 Query: 190 KRLQDLAKKISSTLSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 K Q+L ++ L L+ + + T G+LI IID + PMF S Sbjct: 76 KNAQNL-RRAHEKLENLIKKDPRLSDFQSNLRLSLTDDGLLIQIIDSQERPMFKVGSREL 134 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302 P ++LQ + VL I++ GHTD+ P+ N NW LS DRA ++ + L+ Sbjct: 135 EPYMRIILQALVPVLNDLPNKINLTGHTDSLPYVNGEAGYSNWELSSDRANASRRTLVSG 194 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 G+++++ ++ G A NRRI ILV + Sbjct: 195 GLADNKFLRVIGSADMMNLANVKSDAPINRRISILVLSK 233 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS--KGIFDEQNPPERSSQNKI 98 MT +MAFFLVMW+++++ ++ I YF K M+ + D P K Sbjct: 1 MTAMMAFFLVMWLLSSSTPLQREQIADYFKMPLKLAMSHGDKSSVSDSPIPGGGDDLMKQ 60 Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 D + + T +D + + N ++ +++LEN I + + S+ N ++ G + Sbjct: 61 DGEVLKQ-TLAKMDKQKNAQNLRRAHEKLENLI--KKDPRLSDFQSNLRLSLTDDGLLIQ 117 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E+ + K + L P +I+ L DL KI+ Sbjct: 118 IIDSQERPMFKVGSRELEPY--MRIILQALVPVLNDLPNKIN 157 >gi|254787123|ref|YP_003074552.1| flagellar motor protein MotB [Teredinibacter turnerae T7901] gi|237687385|gb|ACR14649.1| putative chemotaxis protein MotB [Teredinibacter turnerae T7901] Length = 329 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 47/322 (14%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + P L +W +AD M++LM FF+++ + D K + M + G+ Sbjct: 10 ECPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGS--------MAQAFGVQ 61 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 ++ N + I L + N + + Sbjct: 62 NKLNVTDIPKGTSIIAQEFSPARPEPTPLNVIYQNTQDITEMSLEQDCAQEYD------- 114 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 E+G++ + K E+ LA ++++ ++ + Sbjct: 115 ------IEQGEEGVDGGIKVRVKQKLEDLLQKTEQDAYELAEALNEQIEAGQVEVETRGR 168 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 ++ KG F S+ PE V+ ++ VL Sbjct: 169 LIIIRIREKGS---------------------FVSGSAELAPEYRDVMGEVRSVLTLKPG 207 Query: 265 VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I ++GH+D P R R NW LS RA S Q LM G ++SGFA R +A Sbjct: 208 RIEVQGHSDNIPVRRGRYRSNWELSAARAVSVAQELMSGGALPPNRFEVSGFADTRPLVA 267 Query: 324 SDP--MNSANRRIDILVEDRQG 343 + + NRR++IL+ +QG Sbjct: 268 NTTPENRARNRRVEILI--KQG 287 >gi|332341583|gb|AEE54917.1| lateral flagellar motor protein B LafU [Escherichia coli UMNK88] Length = 256 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 3/205 (1%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 QS L+ ++ + E K +L K L +LA Sbjct: 21 QSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATS 80 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I++ + + E G+ + I D +N MF++ S+ +P +L ++ V Sbjct: 81 INTIARDAHMEA---NLEMEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPV 137 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I I GHTDA ++N +NW LS DRA SA +VL ++G+ ED++ ++S A Sbjct: 138 FDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQ 197 Query: 319 RLKIASDPMNSANRRIDILVEDRQG 343 L A +P ++ NRRI+I+V + Sbjct: 198 MLLDAKNPQSAGNRRIEIMVLTKSA 222 >gi|331675914|ref|ZP_08376631.1| putative motility protein [Escherichia coli H591] gi|331076474|gb|EGI47751.1| putative motility protein [Escherichia coli H591] Length = 261 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|157157459|ref|YP_001461420.1| hypothetical protein EcE24377A_0264 [Escherichia coli E24377A] gi|157159714|ref|YP_001457032.1| hypothetical protein EcHS_A0258 [Escherichia coli HS] gi|191165724|ref|ZP_03027563.1| putative chemotaxis protein [Escherichia coli B7A] gi|157065394|gb|ABV04649.1| putative chemotaxis protein [Escherichia coli HS] gi|157079489|gb|ABV19197.1| putative chemotaxis protein [Escherichia coli E24377A] gi|190904231|gb|EDV63941.1| putative chemotaxis protein [Escherichia coli B7A] gi|320176694|gb|EFW51731.1| Flagellar motor rotation protein MotB [Shigella dysenteriae CDC 74-1112] gi|323169560|gb|EFZ55232.1| lateral flagellar motor protein B [Shigella sonnei 53G] Length = 256 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 89/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 37 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|168750213|ref|ZP_02775235.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113] gi|168763471|ref|ZP_02788478.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501] gi|168770028|ref|ZP_02795035.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486] gi|168782991|ref|ZP_02807998.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076] gi|168789703|ref|ZP_02814710.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869] gi|168800332|ref|ZP_02825339.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508] gi|187776213|ref|ZP_02801137.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196] gi|189402400|ref|ZP_02782265.2| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401] gi|194432761|ref|ZP_03065046.1| putative chemotaxis protein [Shigella dysenteriae 1012] gi|195938633|ref|ZP_03084015.1| hypothetical protein EscherichcoliO157_19762 [Escherichia coli O157:H7 str. EC4024] gi|208807047|ref|ZP_03249384.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206] gi|208811824|ref|ZP_03253153.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045] gi|208818543|ref|ZP_03258863.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042] gi|209397836|ref|YP_002268857.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115] gi|217325834|ref|ZP_03441918.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588] gi|254791390|ref|YP_003076227.1| hypothetical protein ECSP_0264 [Escherichia coli O157:H7 str. TW14359] gi|261223715|ref|ZP_05937996.1| hypothetical protein EscherichiacoliO157_03796 [Escherichia coli O157:H7 str. FRIK2000] gi|261255876|ref|ZP_05948409.1| hypothetical protein EscherichiacoliO157EcO_08593 [Escherichia coli O157:H7 str. FRIK966] gi|187768449|gb|EDU32293.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4196] gi|188015577|gb|EDU53699.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4113] gi|188999606|gb|EDU68592.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4076] gi|189355696|gb|EDU74115.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4401] gi|189361036|gb|EDU79455.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4486] gi|189366384|gb|EDU84800.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4501] gi|189370768|gb|EDU89184.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC869] gi|189377329|gb|EDU95745.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC508] gi|194419023|gb|EDX35107.1| putative chemotaxis protein [Shigella dysenteriae 1012] gi|208726848|gb|EDZ76449.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4206] gi|208733101|gb|EDZ81788.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4045] gi|208738666|gb|EDZ86348.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4042] gi|209159236|gb|ACI36669.1| putative chemotaxis protein [Escherichia coli O157:H7 str. EC4115] gi|217322055|gb|EEC30479.1| putative chemotaxis protein [Escherichia coli O157:H7 str. TW14588] gi|254590790|gb|ACT70151.1| chemotaxis motB protein [Escherichia coli O157:H7 str. TW14359] gi|320190216|gb|EFW64866.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. EC1212] gi|320638165|gb|EFX07914.1| hypothetical protein ECO5101_07089 [Escherichia coli O157:H7 str. G5101] gi|320654674|gb|EFX22675.1| hypothetical protein ECO7815_10457 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660242|gb|EFX27752.1| hypothetical protein ECO5905_08983 [Escherichia coli O55:H7 str. USDA 5905] gi|320665008|gb|EFX32118.1| hypothetical protein ECOSU61_13992 [Escherichia coli O157:H7 str. LSU-61] gi|326338763|gb|EGD62582.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1044] gi|326342450|gb|EGD66230.1| Flagellar motor rotation protein MotB [Escherichia coli O157:H7 str. 1125] gi|332097320|gb|EGJ02301.1| lateral flagellar motor protein B [Shigella dysenteriae 155-74] Length = 256 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|330910071|gb|EGH38581.1| flagellar motor rotation protein MotB [Escherichia coli AA86] Length = 256 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|222032078|emb|CAP74817.1| Protein mbhA [Escherichia coli LF82] Length = 261 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|218688122|ref|YP_002396334.1| hypothetical protein ECED1_0264 [Escherichia coli ED1a] gi|218425686|emb|CAR06478.1| flagellar system protein [Escherichia coli ED1a] Length = 296 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 3/185 (1%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + E K +L K L +LA I++ + + E Sbjct: 81 PKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEME 137 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA ++ Sbjct: 138 IVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYK 197 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+V Sbjct: 198 NNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMV 257 Query: 339 EDRQG 343 + Sbjct: 258 LTKSA 262 >gi|218698824|ref|YP_002406453.1| hypothetical protein ECIAI39_0419 [Escherichia coli IAI39] gi|218368810|emb|CAR16558.1| flagellar system protein [Escherichia coli IAI39] Length = 261 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L + V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVEFAPVFDSLDNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|218552836|ref|YP_002385749.1| hypothetical protein ECIAI1_0271 [Escherichia coli IAI1] gi|218693715|ref|YP_002401382.1| hypothetical protein EC55989_0255 [Escherichia coli 55989] gi|218350447|emb|CAU96134.1| flagellar system protein [Escherichia coli 55989] gi|218359604|emb|CAQ97145.1| flagellar system protein [Escherichia coli IAI1] Length = 296 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 80 PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 136 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 137 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 196 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 197 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 256 Query: 338 VEDRQG 343 V + Sbjct: 257 VLTKSA 262 >gi|30061847|ref|NP_836018.1| hypothetical protein S0298 [Shigella flexneri 2a str. 2457T] gi|56479639|ref|NP_706230.2| hypothetical protein SF0277 [Shigella flexneri 2a str. 301] gi|110804360|ref|YP_687879.1| hypothetical protein SFV_0301 [Shigella flexneri 5 str. 8401] gi|30040091|gb|AAP15824.1| putative motility protein [Shigella flexneri 2a str. 2457T] gi|56383190|gb|AAN41937.2| putative motility protein [Shigella flexneri 2a str. 301] gi|110613908|gb|ABF02575.1| putative motility protein [Shigella flexneri 5 str. 8401] gi|281599639|gb|ADA72623.1| putative motility protein [Shigella flexneri 2002017] Length = 261 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|218550065|ref|YP_002383856.1| hypothetical protein EFER_2750 [Escherichia fergusonii ATCC 35469] gi|218357606|emb|CAQ90245.1| flagellar system protein [Escherichia fergusonii ATCC 35469] Length = 296 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 80 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 136 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 137 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 196 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ +NW LS DRA SA +VL +G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 197 KSNIYNNWNLSGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 256 Query: 338 VEDRQG 343 V + Sbjct: 257 VLTKSA 262 >gi|256024126|ref|ZP_05437991.1| hypothetical protein E4_12175 [Escherichia sp. 4_1_40B] gi|300947286|ref|ZP_07161489.1| OmpA family protein [Escherichia coli MS 116-1] gi|301019019|ref|ZP_07183235.1| OmpA family protein [Escherichia coli MS 196-1] gi|299882424|gb|EFI90635.1| OmpA family protein [Escherichia coli MS 196-1] gi|300453087|gb|EFK16707.1| OmpA family protein [Escherichia coli MS 116-1] gi|315134915|dbj|BAJ42074.1| putative motility protein [Escherichia coli DH1] Length = 256 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|325498393|gb|EGC96252.1| hypothetical protein ECD227_2490 [Escherichia fergusonii ECD227] Length = 256 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 50 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 106 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA +++ +NW L Sbjct: 107 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKSNIYNNWNL 166 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL +G+ ED++ ++S A L A +P +S NRRI+I+V + Sbjct: 167 SGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSSGNRRIEIMVLTKSA 222 >gi|126734128|ref|ZP_01749875.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2] gi|126716994|gb|EBA13858.1| putative chemotaxis MotB protein [Roseobacter sp. CCS2] Length = 278 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 119/330 (36%), Gaps = 59/330 (17%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ++ IIK+K I ++ G+WK+ YADF+T +MAFF++MW++NAT + +K + Y Sbjct: 5 SNAPTIIKRKKVIAGGGHHGGAWKVAYADFVTAMMAFFMLMWLLNATTEQQRKGLADY-- 62 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 F P R S ++I + G+ + Sbjct: 63 -------------FAPTIPINRVSGGGSGAFGGDNIFTEQTLAQSGTGISQPTIGMDPVQ 109 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + + + + RD E Sbjct: 110 SETDAEAAAAVAAQVAALRDIE-------------------------------------- 131 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 A + +++D ++ ++ T G++I I D +F +++P P T Sbjct: 132 -----AVLMGQGGESMLSDQALRHIITRLTDEGLVIEIYDLPEVTLFVDDTTVPNPVTAE 186 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + + + + ++++GH A I W LS RA +L G+ RI Sbjct: 187 IATIMARMFTTVSNDVAVKGHLSAKSPLQIDNPVWELSTGRAVQMRLMLQSGGLDPMRIV 246 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVED 340 + SG + D N RI++++ Sbjct: 247 RQSGAGDREPAVR-DATAPRNNRIEVILLR 275 >gi|227884752|ref|ZP_04002557.1| chemotaxis protein [Escherichia coli 83972] gi|227838353|gb|EEJ48819.1| chemotaxis protein [Escherichia coli 83972] gi|307552161|gb|ADN44936.1| putative motility protein [Escherichia coli ABU 83972] Length = 256 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|300919511|ref|ZP_07136009.1| OmpA family protein [Escherichia coli MS 115-1] gi|300413405|gb|EFJ96715.1| OmpA family protein [Escherichia coli MS 115-1] Length = 211 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177 >gi|253774745|ref|YP_003037576.1| hypothetical protein ECBD_3391 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300929521|ref|ZP_07144987.1| OmpA family protein [Escherichia coli MS 187-1] gi|253325789|gb|ACT30391.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300462520|gb|EFK26013.1| OmpA family protein [Escherichia coli MS 187-1] Length = 211 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ ++ + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSITTIAR---DAHMEANLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N DNW L Sbjct: 62 IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYDNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177 >gi|307131627|ref|YP_003883643.1| flagellar motor rotation protein motB [Dickeya dadantii 3937] gi|306529156|gb|ADM99086.1| Flagellar motor rotation protein motB [Dickeya dadantii 3937] Length = 376 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + + + + +L L +++ + ++ +L E G+ Sbjct: 85 GSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQLIEADPRLKALRPHLLIEMVDEGL 144 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282 I IID N PMF S+ P +L+ I +L IS+ GHTD + + Sbjct: 145 RIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDDAQYAMGERGY 204 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDILVEDR 341 NW LS DRA ++ + L+ G++E ++ ++ G A LK A ++ NRRI ++V ++ Sbjct: 205 SNWELSADRANASRRELIIGGLAEGKVLRVVGMADTMNLKQAKGGSDAINRRISLVVLNK 264 Query: 342 QG 343 Q Sbjct: 265 QA 266 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 56/126 (44%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ + D NP + D +++D ++ K +RL+ Sbjct: 62 TPLKIAITSGPKMSDASNPIPGGGSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQL 121 Query: 131 IFYLSN 136 I Sbjct: 122 IEADPR 127 >gi|90423959|ref|YP_532329.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90105973|gb|ABD88010.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 283 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 119/324 (36%), Gaps = 64/324 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMT 78 K ++ ++G+W + +AD M +L FF+++ + D + + FG + Sbjct: 10 KKKPEEAGGHVGAWFVTFADLMGLLTGFFVMLVSFSHQDQYKLQIVAGSMREAFGVQMDA 69 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 G+ + ++ + + Sbjct: 70 RYSGVIE------------------------------------------KDGLPTRGKVK 87 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 EH + + L + + + L + ++ LQ++ + Sbjct: 88 NVEHIAPDQATNRPSPDEGGGMAKLGTQLKADREFAL--------ASASLRQALQEMPE- 138 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I K V+FE T G+ + I+DQ PMF S +P T+++++K+ Sbjct: 139 ---------ITEISKNVMFEETPQGLNLQIVDQEGRPMFPDGSPLPYERTMLLVRKLAAP 189 Query: 259 LAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + ISI GHT ++ P R+ D + LS RA + Q+L G+ + ++G A Sbjct: 190 LRATALRISIVGHTSSTGAPGRDDD-DAFVLSWQRANTVRQILKGEGLPSSHVFAVTGKA 248 Query: 317 HHRLKIASDPMNSANRRIDILVED 340 P+ +ANRR+ I + Sbjct: 249 DSEPLFPDAPLLAANRRVTITLMR 272 >gi|300823443|ref|ZP_07103573.1| OmpA family protein [Escherichia coli MS 119-7] gi|300524061|gb|EFK45130.1| OmpA family protein [Escherichia coli MS 119-7] gi|320201151|gb|EFW75734.1| Flagellar motor rotation protein MotB [Escherichia coli EC4100B] Length = 256 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTVLLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|271500049|ref|YP_003333074.1| OmpA/MotB domain-containing protein [Dickeya dadantii Ech586] gi|270343604|gb|ACZ76369.1| OmpA/MotB domain protein [Dickeya dadantii Ech586] Length = 376 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + + + + +L L +++ + ++ +L E G+ Sbjct: 85 GSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQLIEADPRLRALRPHLLIEMVDEGL 144 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282 I IID N PMF S+ P +L+ I +L IS+ GHTD + + Sbjct: 145 RIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDDAQYAMGERGY 204 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDILVEDR 341 NW LS DRA ++ + L+ G+++ ++ ++ G A LK A ++ NRRI ++V ++ Sbjct: 205 SNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAINRRISLVVLNK 264 Query: 342 QG 343 Q Sbjct: 265 QA 266 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 56/126 (44%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ I D NP + D +++D ++ K +RL+ Sbjct: 62 TPLKIAITSGPKISDASNPIPGGGSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQL 121 Query: 131 IFYLSN 136 I Sbjct: 122 IEADPR 127 >gi|239906259|ref|YP_002952999.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239796124|dbj|BAH75113.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 341 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 129/347 (37%), Gaps = 39/347 (11%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 ++K+ D+ W I AD MT+L+ FFL++ ++ D + + + Sbjct: 7 LRKRRHEDED-----LWPISLADMMTLLLCFFLLIVAVSHVDLNRYERVADSMQQAMVQE 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P K + + D+ PP + S H T + + + + Sbjct: 62 KPAPKKKTAETAPVTDKTAPPPLPFEKPQVRSKVSHTTLSREPAPLYEQPAQGPQAADAS 121 Query: 130 NIFYLSNSQQSEHCK---NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + Q E K + + K + K + K + + EK Sbjct: 122 KLGEPHPGQPQEPAKAAEPTKPGEPAKTPEAAKPGEQPKGTEPAKADATADATAEKAPKP 181 Query: 187 KR------KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 +K L D+ K++S L D V G+ +++ R FD + Sbjct: 182 GEERTGPTRKSLDDIRKELSGKL-----DVTAGAVEVRPRDNGVELNL---RGAAFFDLA 233 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL 299 S+ P I +L+ I LA + +++ GHTD P + + NW LS RA + L Sbjct: 234 SAEVKPGGIPLLRDIAATLAGTPYKVTVEGHTDNLPMESWLYPSNWELSSARASRVARFL 293 Query: 300 MKSGVSEDRISKISGFAHHRLKIAS-DPMN-------SANRRIDILV 338 + GV+ D + ++ G A + + DP + NRR+ ILV Sbjct: 294 IDHGVARDHL-RVEGLADTQPVAPNTDPAGRSIPENQARNRRVVILV 339 >gi|315287740|gb|EFU47143.1| OmpA family protein [Escherichia coli MS 110-3] Length = 211 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ VL I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVLDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177 >gi|313646638|gb|EFS11097.1| lateral flagellar motor protein B [Shigella flexneri 2a str. 2457T] gi|332761628|gb|EGJ91908.1| lateral flagellar motor protein B [Shigella flexneri 4343-70] gi|332761679|gb|EGJ91958.1| lateral flagellar motor protein B [Shigella flexneri 2747-71] gi|332764445|gb|EGJ94678.1| lateral flagellar motor protein B [Shigella flexneri K-671] gi|332768577|gb|EGJ98759.1| ompA family protein [Shigella flexneri 2930-71] gi|333008733|gb|EGK28197.1| lateral flagellar motor protein B [Shigella flexneri K-218] gi|333009709|gb|EGK29159.1| lateral flagellar motor protein B [Shigella flexneri VA-6] gi|333022107|gb|EGK41350.1| lateral flagellar motor protein B [Shigella flexneri K-304] Length = 256 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLYNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|110640466|ref|YP_668194.1| hypothetical protein ECP_0259 [Escherichia coli 536] gi|191171446|ref|ZP_03032995.1| putative chemotaxis protein [Escherichia coli F11] gi|110342058|gb|ABG68295.1| putative chemotaxis membrane protein [Escherichia coli 536] gi|190908380|gb|EDV67970.1| putative chemotaxis protein [Escherichia coli F11] gi|312944854|gb|ADR25681.1| hypothetical protein NRG857_01255 [Escherichia coli O83:H1 str. NRG 857C] gi|320197285|gb|EFW71901.1| Flagellar motor rotation protein MotB [Escherichia coli WV_060327] Length = 256 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PSKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|193068683|ref|ZP_03049644.1| putative chemotaxis protein [Escherichia coli E110019] gi|192958046|gb|EDV88488.1| putative chemotaxis protein [Escherichia coli E110019] Length = 256 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLNNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|300921970|ref|ZP_07138116.1| OmpA family protein [Escherichia coli MS 182-1] gi|301325438|ref|ZP_07218924.1| OmpA family protein [Escherichia coli MS 78-1] gi|300421640|gb|EFK04951.1| OmpA family protein [Escherichia coli MS 182-1] gi|300847736|gb|EFK75496.1| OmpA family protein [Escherichia coli MS 78-1] Length = 211 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177 >gi|312970356|ref|ZP_07784537.1| lateral flagellar motor protein B [Escherichia coli 1827-70] gi|310337005|gb|EFQ02143.1| lateral flagellar motor protein B [Escherichia coli 1827-70] Length = 256 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA+SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRAFSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|170767971|ref|ZP_02902424.1| lateral flagellar motor protein B [Escherichia albertii TW07627] gi|170123459|gb|EDS92390.1| lateral flagellar motor protein B [Escherichia albertii TW07627] Length = 222 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L + L +LA I++ + + Sbjct: 12 KAKPATVAVPEETEKKARDVNEKTALLKKRSATELGELATSINTIARHAHMEA---NLEM 68 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA + Sbjct: 69 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAY 128 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL +G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 129 KNNIYNNWNLSGDRALSARRVLEDAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 188 Query: 338 VEDRQG 343 V + Sbjct: 189 VLTKSA 194 >gi|71280941|ref|YP_267837.1| flagellar motor protein MotB [Colwellia psychrerythraea 34H] gi|71146681|gb|AAZ27154.1| sodium-driven polar flagellar protein [Colwellia psychrerythraea 34H] Length = 314 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 111/314 (35%), Gaps = 43/314 (13%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPF 72 + P L +W +AD M++LM FF+++ + D K I N Sbjct: 3 EQQCKCPPPGLPAWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKI 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P + I++ + + L+ + ++ R E Sbjct: 63 EVKDIPKGTSIIAQEFRPGKPEPTPIEVIQQQTMEMTQQMLEFQAGDETSAGGRQEQRGT 122 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 Q+ S + +D+ ++ ++++ Sbjct: 123 ERGGQSQNTEDALSQQALDQAKQDMEEAA---------------------------QEQV 155 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +L KKI+ L + D ++ E+ ++I I R F S+ P+ V+ Sbjct: 156 NELVKKIAEQLEQQIQDGAIE---LESLGQQVIIRI---RENGSFPSGSAFLQPKFWPVI 209 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 ++IGE+L I I GHTD + NW LS RA + L+K R+ Sbjct: 210 REIGELLNTVPGEIMISGHTDNRGVDSELFSSNWDLSSKRAVAIAHQLIKVPDFDATRLV 269 Query: 311 KISGFAHHRLKIAS 324 +G A R + + Sbjct: 270 A-AGHADTRPLVPN 282 >gi|301019118|ref|ZP_07183322.1| OmpA family protein [Escherichia coli MS 69-1] gi|300399377|gb|EFJ82915.1| OmpA family protein [Escherichia coli MS 69-1] Length = 211 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ ++ + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIAR---DAHMEANLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177 >gi|309797860|ref|ZP_07692242.1| OmpA family protein [Escherichia coli MS 145-7] gi|308118544|gb|EFO55806.1| OmpA family protein [Escherichia coli MS 145-7] Length = 211 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ ++ + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSITTIAR---DAHMEANLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177 >gi|170748097|ref|YP_001754357.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170654619|gb|ACB23674.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 401 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 4/266 (1%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 S I D R D + + + + Sbjct: 140 PQSAAIGDLGAAGRRGGDAARDPFDPLYWEVDVLAPARAERTAPDGITPPPRQARPDARG 199 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 ++ + D D + + E PP++ + + L Sbjct: 200 AEAAGREGEAKPAGPTPVDARPPADRDGEVRAE----GPPVNGPSQASGQGVASAAALKA 255 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +I+ V + T G+LI++ D N MF S+ P PET+ ++++ + Sbjct: 256 EIAKIFPPPAPGTSGPRVEVQGTPEGLLINVTDDLNFSMFAVGSAEPRPETVRAMERLAK 315 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 LA I +RGHTD+ PFR+ DNWRLS RA+ A +L ++G+ E RI ++ G A Sbjct: 316 ALAARPGRIVVRGHTDSRPFRSEVYDNWRLSTARAHMASYMLTRAGIDEARIWRVEGAAD 375 Query: 318 HRLKIASDPMNSANRRIDILVEDRQG 343 + A+DP NRRI+IL++ G Sbjct: 376 RMPRNAADPKAPENRRIEILLQGSPG 401 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 6/182 (3%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 N II+ ++ + +D ++ G WKI +ADFMT LMA FLV+W+I AT+D+TK +I YFN Sbjct: 4 NPPEIIVVRRASDEDDGHHGGVWKIAFADFMTTLMALFLVLWLIKATNDETKTSIANYFN 63 Query: 71 PFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P + KG+ D Q + N + + D++ T E Sbjct: 64 PISLSEPLPLRKGVNDPQ-----PASNDPNAGSKAGEPGGTADMRDKGTPLPPGSVPRER 118 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +F S ++ + + + + F P + +LA R Sbjct: 119 ELFQDPYSVLAKLAAEVEPGKPQSAAIGDLGAAGRRGGDAARDPFDPLYWEVDVLAPARA 178 Query: 190 KR 191 +R Sbjct: 179 ER 180 >gi|89100891|ref|ZP_01173740.1| flagellar motor protein [Bacillus sp. NRRL B-14911] gi|89084378|gb|EAR63530.1| flagellar motor protein [Bacillus sp. NRRL B-14911] Length = 269 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 125/328 (38%), Gaps = 66/328 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 K+K + SW I YAD +T+L+A F+V++ +++ D +A+ + FN + Sbjct: 3 KRKKKEHHEEHVDESWLIPYADILTLLLALFIVLFAMSSVDARKFEALSKAFN----DAF 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G FD S Sbjct: 59 NGGTGFFD-------------------------------------------------FPS 69 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + S + + KD + ++ + +N ++ KI + K+ L+++ + Sbjct: 70 PMPDGAMQSADKADTENKDEVEKASAAGTLEEGQNDM---EAEGKIQKLTDKQELKEVEE 126 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ + + + + + T G+L++I D F S+ + + +IGE Sbjct: 127 KVKTYIQN---NGLTDKLETSLTDEGLLVTIRDN---VFFASGSAEVRSGELTIADEIGE 180 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I I GHTD P +N NW LS+ RA + ++L+ + + R GF Sbjct: 181 LLVMDPPRNIIISGHTDNMPIKNSEFESNWELSVMRAVNFMKILLHNKDLDARAFSAKGF 240 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341 + ++D NRR++IL+ R Sbjct: 241 GEFQPAASNDTKEGRDKNRRVEILILPR 268 >gi|251789151|ref|YP_003003872.1| flagellar motor protein MotB [Dickeya zeae Ech1591] gi|247537772|gb|ACT06393.1| OmpA/MotB domain protein [Dickeya zeae Ech1591] Length = 376 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGI 224 + + + + + +L L +++ + ++ +L E G+ Sbjct: 85 GSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQLIEADPRLRALRPHLLIEMVDEGL 144 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--R 282 I IID N PMF S+ P +L+ I +L IS+ GHTD + + Sbjct: 145 RIQIIDSNNRPMFKTGSAQVEPYMSDILRAIAPILNDIPNKISLSGHTDDAQYAMGERGY 204 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRIDILVEDR 341 NW LS DRA ++ + L+ G+++ ++ ++ G A LK A ++ NRRI ++V ++ Sbjct: 205 SNWELSADRANASRRELIAGGLADGKVLRVVGMADTMNLKQAKGGSDAINRRISLVVLNK 264 Query: 342 QG 343 Q Sbjct: 265 QA 266 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 56/126 (44%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHAAHHGGSWKIAYADFMTAMMALFLVMWLIAISSPSQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 K +T+ + D NP + D +++D ++ K +RL+ Sbjct: 62 TPLKIAITSGPKMSDASNPIPGGGSDPTQQEGDVKRQIDTMDGRLEEIKLNKLRERLDQL 121 Query: 131 IFYLSN 136 I Sbjct: 122 IEADPR 127 >gi|300902537|ref|ZP_07120514.1| OmpA family protein [Escherichia coli MS 84-1] gi|301302019|ref|ZP_07208152.1| OmpA family protein [Escherichia coli MS 124-1] gi|300405350|gb|EFJ88888.1| OmpA family protein [Escherichia coli MS 84-1] gi|300842571|gb|EFK70331.1| OmpA family protein [Escherichia coli MS 124-1] gi|315253712|gb|EFU33680.1| OmpA family protein [Escherichia coli MS 85-1] Length = 211 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177 >gi|300955691|ref|ZP_07168041.1| OmpA family protein [Escherichia coli MS 175-1] gi|2494512|sp|Q47154|MBHA_ECOLI RecName: Full=Putative protein mbhA gi|984586|dbj|BAA07592.1| MbhA [Escherichia coli W3110] gi|1552798|gb|AAB08650.1| MbhA [Escherichia coli] gi|300317442|gb|EFJ67226.1| OmpA family protein [Escherichia coli MS 175-1] Length = 211 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177 >gi|110677964|ref|YP_680971.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh 114] gi|109454080|gb|ABG30285.1| chemotaxis protein MotB, putative [Roseobacter denitrificans OCh 114] Length = 279 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 133/333 (39%), Gaps = 59/333 (17%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q N +IIKKK + ++ G+WK+ YADF+T +MAFF++MW++NAT + ++ + Y Sbjct: 4 QSNLAPVIIKKKKKVVGGGHHGGAWKVAYADFVTAMMAFFMMMWLLNATTEQQRQGLADY 63 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F P P R S + I + G Sbjct: 64 FAP---------------TIPINRISGGGDGAFGGDSIFSEETLPQNGL----------- 97 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +++ + + G+ E+ + EE Sbjct: 98 -----------GATSQHATRKQAASGESGNDDDGGERDTSDEE----------------- 129 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 LQ L +++ V +N ++ ++ T G++I + P+F+ +S +P P Sbjct: 130 ---LQALVEELMGRGGESTVMENALEHIVTRITDEGLVIELFALDGLPLFEPNSDVPTPL 186 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +++ + V +T I+I H + P W S DRA +L ++G+ + Sbjct: 187 MTQLVELVASVAFAATNDIAIGAHVPSRPIVVAQNPVWDASTDRATRTRLMLQENGLEPE 246 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G A +PM + N R++I++ Sbjct: 247 RMQRVTGHADREP-AHLNPMATRNSRVEIVLLR 278 >gi|300977371|ref|ZP_07173862.1| OmpA family protein [Escherichia coli MS 45-1] gi|301045873|ref|ZP_07193060.1| OmpA family protein [Escherichia coli MS 185-1] gi|300302123|gb|EFJ58508.1| OmpA family protein [Escherichia coli MS 185-1] gi|300409896|gb|EFJ93434.1| OmpA family protein [Escherichia coli MS 45-1] gi|315295164|gb|EFU54499.1| OmpA family protein [Escherichia coli MS 153-1] gi|315300866|gb|EFU60088.1| OmpA family protein [Escherichia coli MS 16-3] gi|324010200|gb|EGB79419.1| OmpA family protein [Escherichia coli MS 57-2] Length = 211 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ + + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177 >gi|238782805|ref|ZP_04626834.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970] gi|238716228|gb|EEQ08211.1| Flagellar motor protein [Yersinia bercovieri ATCC 43970] Length = 296 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 6/218 (2%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + L Q +++ K L +G+ + S + + ++ + + + Sbjct: 16 SSTPLQREQIADYFKTPLKLGMAQGERVSLSDSPIPGGGDDFAKQEGEVFRQTLNKLDER 75 Query: 190 KR---LQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K+ LQ +K+ + N + T G+LI +ID + PMF S Sbjct: 76 KQSLNLQRAHQKLKDLIKNDPRLSNYKSNLRLSLTEDGLLIQVIDSQERPMFKVGSKELE 135 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSG 303 P +LQ + VL IS+ GHTD+ P+ NW LS DRA ++ Q L+ G Sbjct: 136 PYMRGILQALVPVLNDLPNKISLTGHTDSLPYARGEVGYSNWELSADRANASRQTLVAGG 195 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++E++ ++ G A+ P + NRRI ILV + Sbjct: 196 LAENKFLRVIGTANMMNLENVRPDDPINRRISILVLSK 233 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 7/162 (4%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+++++ ++ I YF K M + + +P D Sbjct: 1 MTAMMAFFLVMWLLSSSTPLQREQIADYFKTPLKLGMAQGERVSLSDSPIPGGGD---DF 57 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY--LSNSQQSEHCKNSLTRDSEKGKDLC 158 + E K+ Q QR + ++ + S + N +E G + Sbjct: 58 AKQEGEVFRQTLNKLDERKQSLNLQRAHQKLKDLIKNDPRLSNYKSNLRLSLTEDGLLIQ 117 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E+ + K + L P + + A+ L DL KIS Sbjct: 118 VIDSQERPMFKVGSKELEPYMRGILQALV--PVLNDLPNKIS 157 >gi|152996653|ref|YP_001341488.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150837577|gb|ABR71553.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 301 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 2/221 (0%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 ++ + +E + + + + N + K K DL+ + Sbjct: 51 SPEELRSIEGYFQDPTGASTAGYSANPIDLGGSPAKSAEKKLDLQLPQAGSIDVQSRDKF 110 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 K + ++ ++ S ++ L++ K + E T G+ I+++D + PMF++ Sbjct: 111 LGNGPDSAESKSINNMLREEMSKMNTLLSQQ--KNMRIEITPLGVRITLLDDPDKPMFER 168 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ +P+ L + + T I I GHTD+S F DNW LS RA +A +L Sbjct: 169 GSARMMPDIENTLLSMAPIFNKVTNPIVITGHTDSSKFGGGRVDNWDLSALRANAARHIL 228 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + GV + RI+++ G + D ++ NRRI I + Sbjct: 229 EEGGVEDKRIAQVIGLSDTIPYNRLDTDSAENRRISITLLT 269 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 5/178 (2%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG 73 ++I++ I ++ G+WKI ADF +MAFFLV+WI++ + ++IE YF +P G Sbjct: 8 LVIRRVKKIKKGGHHGGAWKIALADFALAMMAFFLVLWIMSVASPEELRSIEGYFQDPTG 67 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + S D P +S++ K+DL + + I S D +G+ + + + N + Sbjct: 68 ASTAGYSANPIDLGGSPAKSAEKKLDLQLPQAGSIDVQSRDKFLGNGPDSAESKSINNML 127 Query: 132 FYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + KN + G + D +K + + + + P + +L+M Sbjct: 128 REEMSKMNTLLSQQKNMRIEITPLGVRITLLDDPDKPMFERGSARMMPDIENTLLSMA 185 >gi|92114147|ref|YP_574075.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91797237|gb|ABE59376.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 330 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 109/319 (34%), Gaps = 71/319 (22%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 ++ G+WKI YADF M + ++++ Sbjct: 18 GHHGGNWKIAYADF----MTALMALFLV-------------------------------- 41 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 L I + KN +D + S S + Sbjct: 42 -------------LWILSMVPKNELDNIAEYFRTPLAVALTGGDKSTASTSAIPGGGADP 88 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 + E+ + + ++S +E L L + ++ L+ ++ ++ Sbjct: 89 TFSEGERRRLDIR----QQSRPSDEIRRLRALRERLEREVREDPNLRQMSSQL------- 137 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + G+ I ++D PMF+ S+ P +LQ + L I Sbjct: 138 ---------RTDFIPEGLRIQLVDTDKRPMFELGSARLAPYMRDLLQALAPELNDVPNAI 188 Query: 267 SIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 S+ GHTD + NW LS DRA ++ + L+ +G+ ++ ++SG + Sbjct: 189 SLTGHTDDLRYAGGEKGYSNWELSADRANASRRALVAAGLDSSKLLRVSGMGARVNLEGT 248 Query: 325 DPMNSANRRIDILVEDRQG 343 P ++ NRRI I+V + Sbjct: 249 QPSDAVNRRISIVVLSERA 267 >gi|300991173|ref|ZP_07179516.1| OmpA family protein [Escherichia coli MS 200-1] gi|300305611|gb|EFJ60131.1| OmpA family protein [Escherichia coli MS 200-1] gi|324015565|gb|EGB84784.1| OmpA family protein [Escherichia coli MS 60-1] Length = 211 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ ++ + E G+ + Sbjct: 5 EETEKKARDVNEKTALLKKKSATELGELATSINTIAR---DAHMEANLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ E+++ ++S A L A +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPENKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 177 >gi|324019871|gb|EGB89090.1| OmpA family protein [Escherichia coli MS 117-3] Length = 211 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 3/176 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + E K +L K L +LA I++ ++ + E G+ + Sbjct: 5 EETEKKARDVNEKTVLLKKKSATELGELATSINTIAR---DAHMEANLEMEIVPQGLRVL 61 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I D +N MF++ S+ +P +L ++ V I I GHTDA ++N +NW L Sbjct: 62 IKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNL 121 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 S DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+V + Sbjct: 122 SGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSA 177 >gi|331681649|ref|ZP_08382282.1| MbhA protein [Escherichia coli H299] gi|331080851|gb|EGI52016.1| MbhA protein [Escherichia coli H299] Length = 261 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 45 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 101 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I GHTDA + Sbjct: 102 EIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIFTGHTDAMAY 161 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 162 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 221 Query: 338 VEDRQG 343 V + Sbjct: 222 VLTKSA 227 >gi|117621021|ref|YP_857806.1| flagellar motor protein MotB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562428|gb|ABK39376.1| sodium-driven polar flagellar protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 63/335 (18%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73 P L + +AD M++LM FF+++ D K I N Sbjct: 2 AKCKCPPPGLPGYMGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMEKAFGVQNILE 61 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + + ++ P R ID + + +T+ +D + G +Q + Sbjct: 62 VKDIPKGTSVIAQEFRPGRPEPTPIDTIMQQTMDMTQTELDFQPGDADQAGGH------- 114 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 +K E + ++++ +++++ Sbjct: 115 ------------------------------------DKSEEKLVGGDTQQEAQKQQQQEQ 138 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 LAK ++ + + D + E I+I I R F S+ P+ V Sbjct: 139 SNALAKALADQMKAQIQDGA---IEVEALGQQIIIRI---REKAAFPAGSAFLQPQFWPV 192 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309 ++K+ +L I+I GHTD + + + + NW LS RA + ++K G R+ Sbjct: 193 VRKVAALLKDVPGEITISGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRL 252 Query: 310 SKISGFAHHRLKIASD-PMNSA-NRRIDILVEDRQ 342 + G A + + + P N NRR++I + + Sbjct: 253 V-VQGMADSQPLVPNTSPENRRMNRRVEISIMQGK 286 >gi|194427556|ref|ZP_03060104.1| putative chemotaxis protein [Escherichia coli B171] gi|194414326|gb|EDX30600.1| putative chemotaxis protein [Escherichia coli B171] Length = 256 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 88/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 37 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P L ++ V I I GHTDA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTQLVELAPVFDSLDNKIIITGHTDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPKSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|15887914|ref|NP_353595.1| flagellar motor protein MotB [Agrobacterium tumefaciens str. C58] gi|15155508|gb|AAK86380.1| flagellar motor protein, PAL/OmpA family [Agrobacterium tumefaciens str. C58] Length = 433 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 1/273 (0%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 T + G ++P + + + + + +++ E + Sbjct: 162 AADSGPATGASGGEAYRDPFDPDFWTQQVKITRADQKQVPSEAAQAADGKQQDVAAKEAD 221 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + D + + ++ P + + + Sbjct: 222 KSAEAVTLVQAGKPADKAEDGKSMEIAAVVPQQRPDAAEQAALAKPNPDQASKASDAEWE 281 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + L ++I +SG + + +G++ G+L++I DQ TPMF+ S++P E ++ Sbjct: 282 KADTLREEIEKQISG-ITGKLSEGLVVTPAEGGLLLTISDQAETPMFNIGSAVPRGELVL 340 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++KIG++L + IRGHTD F+ A DNWRLS+DRA+SAY +L++ G+SE+R+ Sbjct: 341 AMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEERVK 400 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++SGFA RL++ S+P+ ANRRI+IL+E +G Sbjct: 401 QVSGFADRRLQVPSNPLADANRRIEILLEADRG 433 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 10/220 (4%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S G+ + III K+ + G+WKI YADFMT +MAFFLVMW++NA +++TK Sbjct: 2 SEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETK 61 Query: 63 KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEH--------ITKNSVDLK 114 ++ YFNP + S ++ E Q K +I T + + Sbjct: 62 ASVASYFNPIKLSDEKPSSKGLEKPADKEEGVQKKDQSNIQAEKVTKGSAAATGEDLTSQ 121 Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 G + + EN L+ Q + +++ E G + F Sbjct: 122 TGEQSNFSEADFFENPYSVLAEIAQQVGQQANVSAKGEGGAADSGPATGASGGEAYRDPF 181 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 P +++ + ++ + + + G D K Sbjct: 182 DPDFWTQQVKITRADQK--QVPSEAAQAADGKQQDVAAKE 219 >gi|320183885|gb|EFW58714.1| Flagellar motor rotation protein MotB [Shigella flexneri CDC 796-83] Length = 256 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 88/186 (47%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ E + A+ +KK +L + +S + ++ + Sbjct: 37 PSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GH DA + Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHIDAMAY 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L + +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|238784596|ref|ZP_04628602.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC 43970] gi|238714465|gb|EEQ06471.1| Lateral flagellar proton motor protein B [Yersinia bercovieri ATCC 43970] Length = 256 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 4/226 (1%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++++ N S + + + +++ + P Sbjct: 9 EERQEIVAQLNGETIFDKQSYISIPSKSKSGGGKFSDSIDGHEQAKETKSNLAVEVPEPE 68 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + K K +++L++ I S A + +K E G+ I I D + MF Sbjct: 69 QSLEEVVDKSGKEMEELSRIIMQITSTYDAQSNLK---MEVVPQGLRILIQDDKQRDMFQ 125 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297 +SS++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A++ Sbjct: 126 RSSALLTPFFSRLLAELAPAFNEMDNKIIITGHTDASRYRDQVRYNNWNLSGERALMAHK 185 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L+K G+SE+R+ +I+ A L ++P+ ++NRRI+I+V + Sbjct: 186 ALVKGGLSEERVLQINAMADQMLLTPTEPLAASNRRIEIMVLTKTA 231 >gi|91977304|ref|YP_569963.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91683760|gb|ABE40062.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 286 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 114/323 (35%), Gaps = 62/323 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMT 78 K + + W + +AD M +L++FF+++ + D + + FG + Sbjct: 13 KRKSTEEAHLGHGWFVTFADLMALLVSFFVMLVSFSTQDLQKLQIVAGSMREAFGVQQDS 72 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 G+ + + + Sbjct: 73 RFAGVV------------------------------------------ETDGVPVQGKIR 90 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + ++ ++ + E + L + ++ LQD+ + Sbjct: 91 SKTNVAPDQASNTPHLEEAGGAGSSASKAKAEREFAL--------ASASLRQALQDVPE- 141 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + K V+FE T G+ + + DQ PMF + S++P T +++ ++ Sbjct: 142 ---------LAEMSKNVVFEETPLGLNLELTDQEGRPMFPEGSAVPYERTRMLIARLAAP 192 Query: 259 LAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + +SI GHT A+P + D + LS RA + QVL + G++ RI ++G Sbjct: 193 LRATALRVSIVGHTAAAPVNADDEYDAFDLSTSRANAVRQVLKREGLAASRIMLVAGKGD 252 Query: 318 HRLKIASDPMNSANRRIDILVED 340 P +ANRR+ I + Sbjct: 253 GEPLFPEAPTLAANRRVTISLLR 275 >gi|260364262|ref|ZP_05776961.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030] gi|308113750|gb|EFO51290.1| flagellar motor protein MotB [Vibrio parahaemolyticus K5030] Length = 278 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 112/308 (36%), Gaps = 47/308 (15%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + S S D ++ + S ++E Sbjct: 127 GGQSPETSTQSNQSAESDMQQQQSEEMSQEMET--------------------------- 159 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + I L + + E I+I + R F + S+ P+ ++ Sbjct: 160 --LMESIKKALEREIEQGA---IEVENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLV 211 Query: 253 QKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 ++I E++ ++ I GHTD + R NW LS RA S Q + K G S R+ Sbjct: 212 RQIAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL- 270 Query: 311 KISGFAHH 318 ++ G A Sbjct: 271 RVRGMADT 278 >gi|326795804|ref|YP_004313624.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326546568|gb|ADZ91788.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 300 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 3/213 (1%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-KILAMKRK 189 I N + G KS + + + E +++E K Sbjct: 56 IEGYFNDPLGPSTAGYSANPIDLGGSPAKSNEKKLDLGLPEPGSTEQVTQERKQGEGNDG 115 Query: 190 KRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K ++ + + L + ++ + E T G+ I+++D PMF++ S+ +P++ Sbjct: 116 KEIERMNALLEQELKRQGLMNSEETNMRIEITPQGVRITLLDDPTKPMFERGSARLMPDS 175 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307 VL IG +LA ISI GHTD+SP+ + DNW LS RA SA +++ + GVS+ Sbjct: 176 ENVLLGIGSILARLKNPISISGHTDSSPYVDEREIDNWDLSSARANSARKIIEEGGVSDK 235 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R++++ G A DP ++ NRRI I + Sbjct: 236 RMAQVIGLADSIPYNRFDPTSAENRRISITLLT 268 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-P 71 + ++I++ ++ G+WKI ADF +MAFFLV+WIIN AIE YFN P Sbjct: 4 EELVIRRVKRRKKAGHHGGAWKIALADFALAMMAFFLVLWIINVASPQELAAIEGYFNDP 63 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV--DLKIGSTNQKKQYQRLEN 129 G + S D P +S++ K+DL + E + V + K G N K+ +R+ Sbjct: 64 LGPSTAGYSANPIDLGGSPAKSNEKKLDLGLPEPGSTEQVTQERKQGEGNDGKEIERMNA 123 Query: 130 NIFYLSNSQ--QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + Q + N + +G + D K + + + L P S+ +L Sbjct: 124 LLEQELKRQGLMNSEETNMRIEITPQGVRITLLDDPTKPMFERGSARLMPDSENVLL 180 >gi|311992352|gb|ADQ26749.1| MotB-1 [Aeromonas hydrophila] Length = 298 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 63/335 (18%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFG 73 P L + +AD M++LM FF+++ D K I N Sbjct: 1 AKCKCPPPGLPGYMGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMEKAFGVQNILE 60 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNI 131 + + ++ P R ID + + +T+ +D + G Sbjct: 61 VKDIPKGTSVIAQEFRPGRPEPTPIDTIMQQTMDMTQTELDFQPGD-------------- 106 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 DL +K E + ++++ +++++ Sbjct: 107 -----------------------------ADLAGGHDKSEEKLVGGDTQQEAQKQQQQEQ 137 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 LAK ++ + + D ++ E I+I I R F S+ P+ V Sbjct: 138 SNALAKALADQMKAQIQDGAIE---VEALGQQIIIRI---REKAAFPAGSAFLQPQFWPV 191 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309 ++K+ +L I++ GHTD + + + + NW LS RA + ++K G R+ Sbjct: 192 VRKVAALLKDVPGEITVSGHTDDAATEDELFQSNWELSSQRAVAVAHQMIKVPGFDGGRL 251 Query: 310 SKISGFAHHRLKIASD-PMNSA-NRRIDILVEDRQ 342 + G A + + + P N NRR++I + + Sbjct: 252 V-VQGMADSQPLVPNTSPENRRMNRRVEISIMQGK 285 >gi|238793598|ref|ZP_04637221.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC 29909] gi|238727013|gb|EEQ18544.1| Lateral flagellar proton motor protein B [Yersinia intermedia ATCC 29909] Length = 255 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 7/228 (3%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 +++ Q + + + Q S GK E++ + N + Sbjct: 7 SEEERQEIVAQLNGQTIFSQQSFISIPSKSKSGGGKFSDSIDGKEQAKETKSNLAVEVPE 66 Query: 180 KEKILAM---KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 E+ L K +K +++L++ I S A + E G+ I I D + M Sbjct: 67 PEQSLEEVVDKSRKEMEELSRIIMQITSAYDAQ---SNLQMEVVPQGLRILIQDDKQRDM 123 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSA 295 F +SS++ P +L ++ I I GHTDAS +R+ + +NW LS +RA A Sbjct: 124 FQRSSAVLTPFFNRLLAELAPAFNEMDNKIIITGHTDASRYRDQVLYNNWNLSGERALMA 183 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ L+K G+SE R+ +I+ A L ++P+ + NRRI+I+V + Sbjct: 184 HKALVKGGLSEGRVLQINAMADQMLLDPAEPLAAKNRRIEIMVLTKTA 231 >gi|325923841|ref|ZP_08185450.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] gi|325545675|gb|EGD16920.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] Length = 329 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 122/326 (37%), Gaps = 52/326 (15%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEDHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 TA G + +P + + D + +K G+ + ++ Sbjct: 54 TTAFGGSSNAASPVQIGKTQTLGADYDRPSVIKAGVIKAGAPMAASNGPTDPTLLPSMA- 112 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +P + + + ++++ +A Sbjct: 113 ----------------------------------AQMRMPVSLRNQAQLARAQRQMDAVA 138 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 139 AQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGTARDTLSTLA 192 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 193 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 251 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 252 GEFRARADNSTEAGRNANRRVVLIIL 277 >gi|289672567|ref|ZP_06493457.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae FF5] Length = 240 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 1/199 (0%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 L E + + +++ + + + ++ K A+++++ L + + Sbjct: 22 DLGGSPEMSPNQTLNPEVQTTPSPDTVPIEAENAETKAEAVEQERLEMLLQELQNKVQEN 81 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +LFE T+ G+ I I+D N PMFD S+ P +L + + + Sbjct: 82 PQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNK 141 Query: 266 ISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 +SI GHTDA+PF + NW LS +RA +A + L+ + +++++ G+A L Sbjct: 142 VSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDHQ 201 Query: 325 DPMNSANRRIDILVEDRQG 343 +P N NRRIDI+V ++ Sbjct: 202 NPTNPINRRIDIVVLTKKA 220 >gi|207723077|ref|YP_002253485.1| chemotaxis motility protein b [Ralstonia solanacearum MolK2] gi|206588269|emb|CAQ18823.1| probable chemotaxis motility protein b [Ralstonia solanacearum MolK2] Length = 171 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 +L + T G+ I I+DQ+N PMF +S+ P +L+++G L IS+ GHTDA Sbjct: 1 MLIDMTSEGLRIQIVDQQNRPMFANASAEVEPYMRTILRELGSALNDVPNPISLSGHTDA 60 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + + NW LS DRA ++ + L+ G+ ++++++ G +D N NRR Sbjct: 61 TQYATQNGYSNWELSADRANASRRELIAGGMKPEKVARVVGLEASVPLDKTDAFNPINRR 120 Query: 334 IDILVEDRQ 342 I I+V + + Sbjct: 121 ISIVVLNNR 129 >gi|218509333|ref|ZP_03507211.1| flagellar motor protein MotB [Rhizobium etli Brasil 5] Length = 228 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%) Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 + + + + E + +++ GK EK E+N Sbjct: 2 ATEVAKAEDMKPVPLATDQKPAKDAKESKETKGAPETKGGKATDGKAPDEKKAEAEKNAD 61 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + + +R+K+ D ++ + G VA + +G+ + G+L+SI DQ + Sbjct: 62 HQKDADKSAAETERQKKEADELQQQIAQQIGGVAGKLAEGLTVTASEGGLLVSISDQNDD 121 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 MF+ S++P E ++ +++IG +L +++RGHTD ++ +NWRLS+DRA S Sbjct: 122 SMFNIGSAVPRQEMVLAMERIGTILKERGGAVAVRGHTDGRQYKGGQNENWRLSMDRAQS 181 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 AY +L++ G+ E RIS++SGFA RLK+ +DP N+ANRRI+ILV+ Sbjct: 182 AYYMLVRGGLDEKRISQVSGFADRRLKLPADPFNAANRRIEILVQ 226 >gi|289667244|ref|ZP_06488319.1| flagellar motor protein MotD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 324 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 124/326 (38%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G ++ +P + + Sbjct: 54 TSAFGGSSNKASPVQLGKTQSLG------------------------------------- 76 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++H + S+ + TD + +P + + + ++++ + Sbjct: 77 ---ADHDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALASNARTTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|322433005|ref|YP_004210254.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321165232|gb|ADW70936.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 309 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 2/151 (1%) Query: 192 LQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L L K + + + + N + K + T G+ I +++ F+ SS P P Sbjct: 90 LAALKKDLMRAIEKIDSLNRLKKQIEMTVTEEGLRIELVEDAKGTFFETGSSKPTPALEE 149 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+ + E L ISI GHTDA P+ NW LS DRA A + + ++G+ D++ Sbjct: 150 ILKVLSEQLKSLPNSISIEGHTDAQPYATATVYGNWELSTDRANVARREMQENGIRTDQV 209 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVED 340 S++ GFA RL + P++++NRRI ++V++ Sbjct: 210 SQVRGFADQRLHVPEKPLDASNRRISLVVQN 240 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%) Query: 13 QFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-P 71 Q II+ K ++ G+WK+ YADF+T +M+ F+V+W++++T T++ I YFN P Sbjct: 6 QPIIVI-KKKGAHGGHHGGAWKVAYADFVTAMMSLFIVLWLMSSTSKQTQEEIAGYFNDP 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 G + ++G ++ E + L D +D Q + E Sbjct: 65 KGTSTKHGTEGKESKKEEKESKKDDLAALKKDLMRAIEKIDSLNRLKKQIEMTVTEEGLR 124 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L + + ++ + +++ K Sbjct: 125 IELVEDAKGTFFETGSSKPTPALEEILK 152 >gi|21231338|ref|NP_637255.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768610|ref|YP_243372.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris str. 8004] gi|21112997|gb|AAM41179.1| MotB protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573942|gb|AAY49352.1| MotB protein [Xanthomonas campestris pv. campestris str. 8004] Length = 324 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 123/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 TA G +P + + + D Sbjct: 54 TTAFGGSSKAASPVQLGNTQSLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ +A Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVA 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++++ TLS L+ + R + I ++ + +F S++ L + Sbjct: 134 QQLNKTLSPLIDKQL-----ITIRRRDLWIE-VEINSDILFVTGSALLAGSARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 AVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|188991572|ref|YP_001903582.1| flagellar motor protein MotD [Xanthomonas campestris pv. campestris str. B100] gi|167733332|emb|CAP51531.1| motB1 [Xanthomonas campestris pv. campestris] Length = 324 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 123/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEDHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 TA G +P + + + D Sbjct: 54 TTAFGGSSKAASPVQLGNTQSLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ +A Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTILPSMAAQMRMPVSLRNQAQLARAQRQMDAVA 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++++ TLS L+ + R + I ++ + +F S++ L + Sbjct: 134 QQLNKTLSPLIDKQL-----ITIRRRDLWIE-VEINSDILFVTGSALLAGSARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 AVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADEGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|254706492|ref|ZP_05168320.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] Length = 284 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 31/278 (11%) Query: 95 QNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 K+ D+ + TK D + + +++ Q L+ + + Sbjct: 6 DGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLFREPYAMLAELAHETGVLQNQSAKG 65 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEK--------------------ILAMKRKKR 191 + G S + F P K K+ + Sbjct: 66 DGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDLTPPAPQTVPQTAPLPQAQPKKAET 125 Query: 192 LQDLAKKISSTLSGLVADNIVK--------GVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++L + +G A N K V G++I + D+ + MF S+ Sbjct: 126 QEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVPVEGGVMIQLTDKVDYGMFTIGSAK 185 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P + +L++I +V+A + I GHTDA PF++ DN RLS RA AY +L++ G Sbjct: 186 PDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATYDNRRLSSARAQMAYYMLVRGG 245 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 + E R+ ++ G+A K +DP + NRRIDI ++ + Sbjct: 246 LDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 283 >gi|261313945|ref|ZP_05953142.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] gi|261302971|gb|EEY06468.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] Length = 283 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 31/278 (11%) Query: 95 QNKIDLSIDEHI---TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 K+ D+ + TK D + + +++ Q L+ + + Sbjct: 5 DGKVRFESDQQVESSTKVVNDTTVRPASDQEERQLFREPYAMLAELAHETGVLQNQSAKG 64 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEK--------------------ILAMKRKKR 191 + G S + F P K K+ + Sbjct: 65 DGGTAQSGSASGADGGEAYRDPFSPDYWSSKAVGDLTPPAPQTVPQTAPLPQAQPKKAET 124 Query: 192 LQDLAKKISSTLSGLVADNIVK--------GVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++L + +G A N K V G++I + D+ + MF S+ Sbjct: 125 QEELIADLKKAATGEPAPNAGKAAKPEPMPDVTVVPVEGGVMIQLTDKVDYGMFTIGSAK 184 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P + +L++I +V+A + I GHTDA PF++ DN RLS RA AY +L++ G Sbjct: 185 PDARVVQMLERIAQVIARQPGEVIISGHTDARPFKSATYDNRRLSSARAQMAYYMLVRGG 244 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 + E R+ ++ G+A K +DP + NRRIDI ++ + Sbjct: 245 LDEKRVLRVEGYADRHPKNPNDPNAAENRRIDIFIKSK 282 >gi|166711987|ref|ZP_02243194.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 324 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G NP + + D Sbjct: 54 TSAFGGSSTAANPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|90418368|ref|ZP_01226280.1| putative chemotaxis protein motB [Aurantimonas manganoxydans SI85-9A1] gi|90338040|gb|EAS51691.1| putative chemotaxis protein motB [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 1/252 (0%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P D + + + + + S + Sbjct: 160 PGLNGGDAYRDPFDPASWQLAPNATESAAVIDEAPPSEFKTAVLPNDMSDEPVPVDAETQ 219 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 ++ + + + E A+ + R +L +I++ + Sbjct: 220 AEAVAEANAEAEAETPDAGEAELAEADADAKPADGEAVAQADRADELKAEIAAEFARQ-G 278 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + + G+ ISI D + MF+ S+ P P+ + ++++I VL+ +SI Sbjct: 279 EPLPTNFEVVPGEGGVTISIADDMMSGMFEVGSARPTPQVVAMMERIASVLSKQPGNVSI 338 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 RGHTD+ PFR+ DNWRLS RA+ AY +L + G+ EDR+ I G A KIA DP Sbjct: 339 RGHTDSRPFRSAQYDNWRLSTARAHMAYYMLARGGLDEDRVKAIEGVADRAPKIADDPEA 398 Query: 329 SANRRIDILVED 340 +ANRRI+IL+ + Sbjct: 399 AANRRIEILLTE 410 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 3/190 (1%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G + + + II++++ + ++ G WKI +ADFMT +MAFFLVMW+ A+D T+K Sbjct: 6 GAGHLDRQEIIIVRRRGGHGEEAHHGGVWKIAFADFMTAMMAFFLVMWLTQASDMATRKQ 65 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + QYFNP L AS + + +S+++ + I + T K + +Q+ Sbjct: 66 VAQYFNPIR--LNDASPATRGVEQSDDGASRDENENGISKADTNGDPHGKPLAGDQEGGE 123 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + Y ++ + + T + + D L + + F P + Sbjct: 124 EEALFRDPYAVLAEIAAEGASETTGELQGKPDGTGLPGLNGG-DAYRDPFDPASWQLAPN 182 Query: 185 AMKRKKRLQD 194 A + + + Sbjct: 183 ATESAAVIDE 192 >gi|310816853|ref|YP_003964817.1| OmpA/MotB [Ketogulonicigenium vulgare Y25] gi|308755588|gb|ADO43517.1| OmpA/MotB [Ketogulonicigenium vulgare Y25] Length = 284 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 122/333 (36%), Gaps = 68/333 (20%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 Q +Q IIIK+K + ++ G+WK+ YADF+T +MAFFL+MWII Sbjct: 16 QTGNQRIIIKRKKVVAGGGHHGGAWKVAYADFVTAMMAFFLLMWII-------------- 61 Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 N + F P S + V +G Sbjct: 62 -NSITEEQRDGLANFFATGTPVSTVSGGADGMFGGRDSQSQQVGPAVG------------ 108 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 S + + +G +S+D+ Sbjct: 109 -----------SGMDYITGRMPTARGASAAQSSDILA----------------------- 134 Query: 189 KKRLQDLAKKIS-STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+D+A+ +S + LV D I + ++ T G++I + + P+F ++ P Sbjct: 135 ---LEDIARVLSGQSGESLVDDAIQRHIITRMTDEGLVIEVFSTPDAPVFQPGGTVLTPL 191 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ ++Q I V A I++ H + W L+ RA + L +GV+ Sbjct: 192 SLAIIQMIASVAAQVENGIAVAAHLPQQ--AGTDQGAWALTAARADTIRAALEGAGVAPV 249 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R+ +++G A I DP N R++I V Sbjct: 250 RLRRVTGHADRSP-ITLDPTVQRNDRVEITVLR 281 >gi|319787078|ref|YP_004146553.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465590|gb|ADV27322.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 323 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 125/329 (37%), Gaps = 55/329 (16%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++K + + +W I YAD MT+L+AFF+VM+ I+ ++ + + L Sbjct: 3 RRKKHEEHGNH--EAWAIPYADLMTLLLAFFVVMYAISTLNEGKYRVLAD-------ALT 53 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 A G NP + + +L+ F + Sbjct: 54 AAFGGAPRTINPVQVGN------------------------------HQLQGADFDRPSP 83 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 QS R + L ++ +P ++ + +++L +A Sbjct: 84 IQSGA------RSGPSAPSPAPNPTLLPALASHMRTGVPVDVSDRATVQRAQRQLGTIAA 137 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ LS LV + + + + I + +FD S+ VL ++ + Sbjct: 138 RLEEALSPLVDARL---ITVRRAELWLEVEI---NSDILFDTGSASLDASARQVLSRLAD 191 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 VL + + + G+TD P + NW LS RA S + +GV+ +R++ + G+ Sbjct: 192 VLRDTPNPVRVEGYTDDRPINTVQFPSNWELSAARAASVVHLFSANGVAPERLAMV-GYG 250 Query: 317 HHRLKIAS--DPMNSANRRIDILVEDRQG 343 HR + + + + NRR+ ++V G Sbjct: 251 EHRPRADNLTEEGRNRNRRVVLIVLAAPG 279 >gi|254504256|ref|ZP_05116407.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222440327|gb|EEE47006.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 471 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 10/281 (3%) Query: 66 EQYFNPFGKNLMTASKG------IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 E Y +PF G + P R + + T+ Sbjct: 191 EAYRDPFDPQFWQFRPGRGVDGAAAETAGLPTRPGSGNGAGQSADQADGDKSWNAPFETD 250 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + + ++ S + + S + K + + + ++ + Sbjct: 251 GSTELAQTKSGTGPTSETGTTSGDGPSEFTGTSKNQIVAHVSRRDQETSLAAEAEGGATE 310 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 E + L + G + +N + G LIS+ D +N MF Sbjct: 311 AETVPGALLVAELT----TVLDAAEGTLLENTAAQITVVRQDDGALISLTDDQNFGMFAI 366 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ P PE + +L+++G+V++ + I I GHTDA PF++ DNWRLS RA+ A +L Sbjct: 367 GSAEPRPELVSLLERLGKVISKTGAQIVITGHTDARPFKSKTYDNWRLSSARAHMALYML 426 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + GV DR +I G A LK A DP ++NRR++I + + Sbjct: 427 SRGGVGADRFVRIEGAADRHLKNAEDPFAASNRRVEIYLLE 467 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 63/146 (43%) Query: 12 DQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP 71 ++ +I++++ DD G WKI YADFMT LMAFFLVMW+IN TD+ ++ + QYFNP Sbjct: 3 NEIVIVRRRHNWDDDEKPHGVWKIAYADFMTALMAFFLVMWLINVTDESVRRGVAQYFNP 62 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 ++ ++ +++N L + + + + + + N Sbjct: 63 VKLASTAPNRKGLNDPIVNGDTNENGTKLFTGKLGGTDEQESTLERSGEADVETEGVNAS 122 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDL 157 + S + + Sbjct: 123 GAAEMKAAAGAQAASGEFTQSHPESI 148 >gi|325928224|ref|ZP_08189430.1| flagellar motor protein [Xanthomonas perforans 91-118] gi|325541413|gb|EGD12949.1| flagellar motor protein [Xanthomonas perforans 91-118] Length = 324 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G ++ +P + + D Sbjct: 54 TSAFGGSSNKASPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGRARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + G++ R++ + G+ Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|325916150|ref|ZP_08178436.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] gi|325537641|gb|EGD09351.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] Length = 324 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 117/326 (35%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G +P + + D Sbjct: 54 TSAFGGSSTNASPVQLGKTQSLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TLS L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLSPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGGARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P + NW LS RA S + G++ R++ + G+ Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATVQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246 Query: 316 AHHRLKIASDPMNSA--NRRIDILVE 339 R + + NRR+ +++ Sbjct: 247 GEFRARADNTTEAGRNANRRVVLIIL 272 >gi|58582454|ref|YP_201470.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427048|gb|AAW76085.1| MotB protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 286 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G +P + + D Sbjct: 54 TSAFGGSSTAASPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|39935962|ref|NP_948238.1| chemotaxis protein MotB2 [Rhodopseudomonas palustris CGA009] gi|39649816|emb|CAE28338.1| possible chemotaxis protein MotB2 [Rhodopseudomonas palustris CGA009] Length = 326 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 110/321 (34%), Gaps = 61/321 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 + + W + +AD M +L++FF+++ + D + + + FG + Sbjct: 55 KKKAEEAHATHGWFVTFADLMGLLVSFFVMLVSFSTQDLRKMQIVAGSMRDAFGVQQNSR 114 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G+ + P + E + + G + + + E Sbjct: 115 FAGVIETDGVPVQGKVKSKMNVAPEQASNTPHLEESGGSGSAASHAKAEREF-------- 166 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + ++ LQD+ + Sbjct: 167 ------------------------------------------ALASASLRQALQDVPE-- 182 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+FE T G+ + + DQ PMF S++P T ++ ++ L Sbjct: 183 --------LAEMSKNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPL 234 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 ++ + I GHT A+ + D LS++RA + +VL + G+ ++ + G Sbjct: 235 RATSLRVIIVGHTAATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGE 294 Query: 320 LKIASDPMNSANRRIDILVED 340 P +ANRR+ I + Sbjct: 295 PLFPDAPALAANRRVTITLMR 315 >gi|289662354|ref|ZP_06483935.1| flagellar motor protein MotD [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 324 Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 121/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G + +P + + D Sbjct: 54 TSAFGGSSNAASPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARATLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|84624345|ref|YP_451717.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368285|dbj|BAE69443.1| MotB protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 324 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G +P + + D Sbjct: 54 TSAFGGSSTAASPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|294624200|ref|ZP_06702921.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665070|ref|ZP_06730375.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601500|gb|EFF45516.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605151|gb|EFF48497.1| flagellar motor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 324 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G ++ +P + + D Sbjct: 54 TSAFGGSSNKASPVQLGKTQSLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGRARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + G++ R++ + G+ Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|21242652|ref|NP_642234.1| flagellar motor protein MotD [Xanthomonas axonopodis pv. citri str. 306] gi|21108121|gb|AAM36770.1| MotB protein [Xanthomonas axonopodis pv. citri str. 306] Length = 324 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G ++ +P + + D Sbjct: 54 TSAFGGSSNKASPVQLGKTQSLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGRARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + G++ R++ + G+ Sbjct: 188 AVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|82940569|emb|CAJ44300.1| putative Chemotaxis Motility protein B (MotB) [Rhizobium leguminosarum bv. viciae] Length = 146 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +I+ + G VA + +G+ + G+L+SI DQ + MF+ S++P E ++ ++KIG Sbjct: 2 QIAQQIGG-VAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQEMVLAMEKIGA 60 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 +L I+IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA Sbjct: 61 ILKARGGAIAIRGHTDGRQYKGTQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFAD 120 Query: 318 HRLKIASDPMNSANRRIDILVEDRQG 343 RLK+ SDP N+ NRRI+ILV+ QG Sbjct: 121 RRLKLPSDPFNATNRRIEILVQADQG 146 >gi|78047517|ref|YP_363692.1| flagellar motor protein MotD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035947|emb|CAJ23638.1| flagellar motor protein MotB [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 324 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G ++ +P + + D Sbjct: 54 TSAFGGSSNKASPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKQL-----ITIRRNDLWIE-VEINSDILFGTGSATLAGGARGTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + G++ R++ + G+ Sbjct: 188 SVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|330445280|ref|ZP_08308932.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489471|dbj|GAA03429.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 292 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 116/322 (36%), Gaps = 57/322 (17%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD T+LM FF+++ + D K I N N + + + Sbjct: 1 MATFADLATLLMCFFVLLLSFSEMDVLKFKQIAGSMKYAFGVQNMLEVNDIPKGTSVIAQ 60 Query: 87 QNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P R I++ + + I T+ ++D G +++ QR N+ + + + Sbjct: 61 EFRPGRPEPTPIEVIMQQTIDMTQRTLDFHEGDSDRAGGTQRDAGNLTGGQSKKTATENN 120 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + + +K ++ L + ++ L Sbjct: 121 ENEQEELDKMQN-------------------------------------QLKEVLTKALE 143 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 ++D K + E ++I I R F + S+ P+ ++++I ++ Sbjct: 144 REISD---KVIEIENLGQQVVIRI---REKGAFPEGSAFLQPKFKPLVRQIALLVKDVPG 197 Query: 265 VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322 +I + GHT + R NW LS RA S Q + K G ++ ++ G A Sbjct: 198 IIRVSGHTANDQMDSELYRSNWDLSAQRAVSVAQEMEKVKGFDHTKM-RVVGLADTAPIA 256 Query: 323 ASDP--MNSANRRIDILVEDRQ 342 + + NRR++I + + Sbjct: 257 DNKTKEGRAKNRRVEISIMQGK 278 >gi|316933944|ref|YP_004108926.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601658|gb|ADU44193.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 284 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 114/324 (35%), Gaps = 63/324 (19%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNL 76 KKKV + W + +AD M +L++FF+++ + D + + FG Sbjct: 12 KKKVEDGHAVGHG--WFVTFADLMALLVSFFVMLVSFSTQDLRKMQIVAGSMREAFGVQQ 69 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + G+ + P + + + + G + + + E Sbjct: 70 NSRFAGVLETDGVPVQGQVKSKRNVAPDQASNTPHLEEAGGSGSAASHAKAEREF----- 124 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + ++ LQD+ Sbjct: 125 ---------------------------------------------ALASASLRQALQDVP 139 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + + V+FE T G+ + + DQ PMF S+IP T ++ ++ Sbjct: 140 ELTE----------MSRNVIFEETPVGLNLELTDQDGRPMFADGSAIPYERTRKLVARLA 189 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L ++ ISI GHT A+ + D LS++RA + ++L + G+ ++ + G Sbjct: 190 APLRATSLRISIVGHTAATLMQVDDDDPLSLSINRANAVREILKQQGLPTSQVLSLVGKG 249 Query: 317 HHRLKIASDPMNSANRRIDILVED 340 PM +ANRR+ I + Sbjct: 250 DGDPLFPDAPMLAANRRVTITLMR 273 >gi|256829772|ref|YP_003158500.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578948|gb|ACU90084.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 300 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 3/189 (1%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAM-KRKKRLQDLAKKISSTLSGLVADNIVK 213 L S + + L PL E M K +++ K+ + + + Sbjct: 68 DGLPPSMSVGAGGQSAADPQLKPLIMEGTTGMFAEGKSQEEILKEAMAKMIEERLKEYKE 127 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 ++ +T G+ I ++ P FD +SS + VL+ I + + I++ GHTD Sbjct: 128 ELIIDTFDNGVRIQMLYGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVEGHTD 187 Query: 274 ASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 A P + NW LS DRA SA +L + G+ R+ +++G+A + I +P + N Sbjct: 188 AVPLGGPSSRYTNWELSTDRASSARVILEEFGLDPKRMVRVAGYAATQPLIRENPEDPRN 247 Query: 332 RRIDILVED 340 RR+ IL+ + Sbjct: 248 RRVSILLFN 256 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 27/165 (16%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN---------------- 75 +WKI YAD +T +MAFFL+MW++N ++ K+ + YF F Sbjct: 24 AWKIAYADLVTAMMAFFLLMWLLNNVSEEKKEQLSIYFKEFSVIDGLPPSMSVGAGGQSA 83 Query: 76 --------LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR- 126 +M + G+F E E + + I+E + + +L I + + + Q Sbjct: 84 ADPQLKPLIMEGTTGMFAEGKSQEEILKEAMAKMIEERLKEYKEELIIDTFDNGVRIQML 143 Query: 127 --LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 N F ++SQ + +N L ++ +DL +E + Sbjct: 144 YGEGNPFFDSASSQLTGDARNVLKVIADTVRDLPNQIAVEGHTDA 188 >gi|188576036|ref|YP_001912965.1| flagellar motor protein MotD [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520488|gb|ACD58433.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 286 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 57/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N +W I YAD MT+L+AFF+VM+ I++ ++ K + Q L Sbjct: 1 MARRRTHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQ-------AL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +A G +P + + D Sbjct: 54 TSAFGGSSTAASPVQLGKTQTLGADYD--------------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + S+ + TD + +P + + + ++++ + Sbjct: 81 -------RPSVIKAGAPMAASNGPTDPSLLPSMAAQMRMPVSLRNQTQLARAQRQMDAVE 133 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++S TL+ L+ + R + I ++ + +F S+ L + Sbjct: 134 QQLSKTLAPLIDKKL-----ITIRRNDLWIE-VEINSDILFGTGSAALAGNARTTLSTLA 187 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + + + G+TD P NW LS RA S + GV+ R++ + G+ Sbjct: 188 SVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGVAPQRLAMV-GY 246 Query: 316 AHHRLK--IASDPMNSANRRIDILVE 339 R + +++ +ANRR+ +++ Sbjct: 247 GEFRARADNSTEAGRNANRRVVLIIL 272 >gi|285018158|ref|YP_003375869.1| flagellar motor protein [Xanthomonas albilineans GPE PC73] gi|283473376|emb|CBA15881.1| probable flagellar motor protein [Xanthomonas albilineans] Length = 317 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 119/327 (36%), Gaps = 62/327 (18%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + D N +W I YAD MT+L+AFF+VM+ ++ + + + N Sbjct: 3 RKHFQDEHTNHEAWAIPYADLMTLLLAFFVVMYALSTVNAAKYRVMANAMNAA------- 55 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 ++Q + + E + D + L+ N Sbjct: 56 ----------FGGTAQTMHPVQVGEQPLQGQSDARATPIQSSPALSILDPNRL------- 98 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 SL R ++ +D + ++ +++ +A+++ Sbjct: 99 ---PATSLPRPADALRDEQQLRRAQQQLDR-------------------------IAERL 130 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S LS L+ + R+G+ I ++ + +F S+ L ++ ++L Sbjct: 131 DSALSPLIQKKL-----ITVHRSGLWIE-VEINSDILFGSGSATLDQSAHATLAQLAQIL 184 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A + + G+TD +P NW LS RA S + G+ R+S I G+ Sbjct: 185 ASVPNGVRVEGYTDNTPIATAQFPSNWELSAARAASVVHLFADQGLQPSRLSMI-GYGQF 243 Query: 319 RLKIASDPMNSA--NRRIDILVEDRQG 343 R ++D + NRR+ +++ G Sbjct: 244 RPHASNDTASGRNANRRVVLVILADSG 270 >gi|88799579|ref|ZP_01115155.1| Flagellar motor protein [Reinekea sp. MED297] gi|88777664|gb|EAR08863.1| Flagellar motor protein [Reinekea sp. MED297] Length = 319 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 63/321 (19%), Positives = 123/321 (38%), Gaps = 49/321 (15%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 + L +W ++D M +LM FF+++ + D K + Sbjct: 8 CPECEPGLPAWMATFSDLMALLMCFFVLLLSFSEMDALKFKRLAGSLR------------ 55 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + I N V ++ R E + Sbjct: 56 ---------------NAFGVQAEINANDVPKGTSIIAKEFSPGRPEPTPLNVVRQDTVAD 100 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K+SL + ++ +E ++++ I++ + + L+D A +I+ Sbjct: 101 LKDSLEILCQDT----------FTMQEEAQGDQGQMTRQVIISDEAMQELEDEAARIAQA 150 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS +A+ +++ ET I+I + +Q F S E + VL K+ E+L + Sbjct: 151 LSDEIAEGMLQ---IETVNETIIIRVKEQS----FTGGSDYVADEFLPVLDKVRELLVTT 203 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRL 320 I + GHTD P R+NW LS RA S + L + ++E+R + I G + Sbjct: 204 PGDIWVEGHTDNVPIATSQFRNNWLLSAARALSVAEYLFIAPEMAEERFT-IVGHGSTKP 262 Query: 321 KIASDP--MNSANRRIDILVE 339 +++ + NRR++I+++ Sbjct: 263 IASNETPEGRAQNRRVEIIIK 283 >gi|192291615|ref|YP_001992220.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|192285364|gb|ACF01745.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 285 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 110/321 (34%), Gaps = 61/321 (19%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTA 79 + + W + +AD M +L++FF+++ + D + + + FG + Sbjct: 14 KKKAEEAHATHGWFVTFADLMGLLVSFFVMLVSFSTQDLRKMQIVAGSMRDAFGVQQNSR 73 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G+ + P + E + + G + + + E Sbjct: 74 FAGVIETDGVPVQGKVKSKMNVAPEQASNTPHLEESGGSGSAASHAKAEREF-------- 125 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + ++ LQD+ + Sbjct: 126 ------------------------------------------ALASASLRQALQDVPE-- 141 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K V+FE T G+ + + DQ PMF S++P T ++ ++ L Sbjct: 142 --------LAEMSKNVVFEETPVGLNLELTDQDGRPMFPDGSAVPYERTRKLVARLAAPL 193 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 ++ + I GHT A+ + D LS++RA + +VL + G+ ++ + G Sbjct: 194 RATSLRVIIVGHTAATVVQAGDDDPLSLSVNRANAVREVLKQEGLPSSQVLSLVGKGDGE 253 Query: 320 LKIASDPMNSANRRIDILVED 340 P +ANRR+ I + Sbjct: 254 PLFPDAPALAANRRVTITLMR 274 >gi|238790287|ref|ZP_04634061.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii ATCC 33641] gi|238721637|gb|EEQ13303.1| Lateral flagellar proton motor protein B [Yersinia frederiksenii ATCC 33641] Length = 241 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 4/202 (1%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 NS + + + +++ + P + + K ++ +++L++ I Sbjct: 19 PSNSKSGGGKFSDSIDGQEQAKETKSNLAVEVPEPEQSLEDVVDKSRQEMEELSRIIMQI 78 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S A + E G+ I I D + MF +SS++ P +L ++ Sbjct: 79 TSAYDAQ---SNLHMEVVPQGLRILIQDDKQRDMFQRSSAVLTPFFSRLLGELAPAFNEM 135 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I I GHTDAS +R+ +NW LS +RA A++ L+K G+++ R+ +I+ H L Sbjct: 136 DNKIIITGHTDASRYRDQELYNNWNLSGERALMAHKALVKGGLADGRVLQINAMGHQMLL 195 Query: 322 IASDPMNSANRRIDILVEDRQG 343 ++P+ + NRRI+I++ + Sbjct: 196 HETEPLAAKNRRIEIMILTKTA 217 >gi|315180456|gb|ADT87370.1| chemotaxis LafU protein [Vibrio furnissii NCTC 11218] Length = 324 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + L+ ++ I ++ L + V + T G+ I I D PMF++ S Sbjct: 109 EVDTHQELELFSRLIEDQVNEL---DGAGSVNVQITPQGLKIIISDSDKGPMFNRGGSSM 165 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P +L + V + I + GHTDAS FR + NW LS +RA SA L GV Sbjct: 166 TPYYQDLLLNLAPVFSRVENAIIVTGHTDASRFRGTSMTNWELSSNRANSARYFLNSGGV 225 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +I ++SG A + +P + NRRI+I + Sbjct: 226 PRAQIFQVSGMAESAPLLPENPKSGQNRRIEIFLLT 261 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 56/170 (32%), Gaps = 1/170 (0%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 D IIKKK + + G WK+ AD M + A FL++W++ DD+ + QYF Sbjct: 2 SQDGVTIIKKKKRGGHSGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 T S P + Q E L G + ++ + Sbjct: 62 QTGEVQAHTLSVDALGNSISPIKLPQIATAHIDAEFDRMRDASLIEGEVDTHQELELFSR 121 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 I N N + + K + +D N+ + P Sbjct: 122 LIEDQVNELDGAGSVN-VQITPQGLKIIISDSDKGPMFNRGGSSMTPYYQ 170 >gi|260768753|ref|ZP_05877687.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] gi|260616783|gb|EEX41968.1| Flagellar motor rotation protein MotB [Vibrio furnissii CIP 102972] Length = 324 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + L+ ++ I ++ L + V + T G+ I I D PMF++ S Sbjct: 109 EVDTHQELELFSRLIEDQVNEL---DGAGSVNVQITPQGLKIIISDSDKGPMFNRGGSSM 165 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P +L + V + I + GHTDAS FR + NW LS +RA SA L GV Sbjct: 166 TPYYQDLLLNLAPVFSRVENAIIVTGHTDASRFRGTSMTNWELSSNRANSARYFLNSGGV 225 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 +I ++SG A + +P + NRRI+I + Sbjct: 226 PRAQIFQVSGMAESAPLLPENPKSGQNRRIEIFLLT 261 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 1/170 (0%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 D IIKKK + G WK+ AD M + A FL++W++ DD+ + QYF Sbjct: 2 SQDGVTIIKKKKRGGHGGGHGGGWKVAMADLMISMFALFLILWLLTMMDDEEGSQLIQYF 61 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 T S P + Q E L G + ++ + Sbjct: 62 QTGEVQAHTLSVDALGNSISPIKLPQIATAHIDAEFDRIRDASLIEGEVDTHQELELFSR 121 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 I N N + + K + +D N+ + P Sbjct: 122 LIEDQVNELDGAGSVN-VQITPQGLKIIISDSDKGPMFNRGGSSMTPYYQ 170 >gi|254473486|ref|ZP_05086883.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062] gi|211957602|gb|EEA92805.1| OmpA/MotB domain protein [Pseudovibrio sp. JE062] Length = 573 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 22/292 (7%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST----------NQ 120 P +A + + P+ + + I + + + D + Sbjct: 285 PAVAGEASAESSVIVIGDAPDGEGEKLAEGEILKQLAQTQADEAGEDAVMTRLVFAEVKK 344 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + +++ + E K + + + E +P Sbjct: 345 GEAAAKVDEKDVPELVEETEEALKIEIVEAEPTPAEPVSEPIEVAQTDPETLPMVPAAKP 404 Query: 181 EKILAMKR---------KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + K+L +A + + L GL + F +R G+LI I+D Sbjct: 405 TEAAQGAESGDDEDDEGDKQLVSIANSVGAALDGLKTGA---SIEFTHSRDGVLIRIMDN 461 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + MF SS P P+ + ++KI +VL I IRGHTDA PF++ DNWRLS R Sbjct: 462 DDFGMFAVGSSEPHPDVVKAMEKIAKVLEEENGEIVIRGHTDARPFKSKRNDNWRLSTAR 521 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 A+ AY +L++ G+ E+RI I G+A RLK +P NRRI+I++ Q Sbjct: 522 AHMAYFMLVRGGLDENRIVGIEGYADRRLKDVEEPYAPQNRRIEIMLMKGQA 573 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 4/148 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E + II++++ + T G WKI YADF T +MAFFL+MW++NA+D+ +++ I YF Sbjct: 4 EPQELIIVRRRNSDMITTPKSGVWKIAYADFATAMMAFFLLMWLVNASDEASQRGIASYF 63 Query: 70 NPFG-KNLMTASKGIFDEQNPPERSSQNKI---DLSIDEHITKNSVDLKIGSTNQKKQYQ 125 NP + + KGI D + P + ++ I T+ G ++ + Sbjct: 64 NPIKLVDSTASPKGIRDPEETPSPTDSDEGVDNGKPIGAGGTEKQGPTSGGGADKAEPIS 123 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEK 153 + +E T S + Sbjct: 124 DRDTGENSTFAGANAEDGGVKATSVSNR 151 >gi|182679602|ref|YP_001833748.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635485|gb|ACB96259.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 416 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 9/275 (3%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 +L + + ++ R + + + D+K + Sbjct: 149 LKAPASDLQASDAEVENKGADVYRDPFAPLMPAPFASDETDPADVKTTGMS-GVTVDHAS 207 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N + ++ S L + + +G + K + + + SKE + + R Sbjct: 208 ANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQLQNGETSSQLSVTPKEDSKELVAELNR 267 Query: 189 -KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K L + KKIS+ S + + E+T G+L+++ D MF SS P + Sbjct: 268 IKSELNSVQKKISAAPSTPI-------IEVESTSEGVLLNLTDDVTYSMFAVGSSEPQKQ 320 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 T+ +++K+ +L T + IRG+TD P+++ DNWRLS RA A +L++ G+ Sbjct: 321 TVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQYMLIRGGLDPK 380 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 R+ I G+A LK + DP S NRRI+ILV + Sbjct: 381 RVEHIEGYADRHLKNSEDPNASVNRRIEILVRKEK 415 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 6/174 (3%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ +++ +IIK++V+ + ++ G+WKI +ADFMT LMA FLV+W+IN+ ++ TK +I + Sbjct: 2 SENHNEIVIIKRRVS-HEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIAR 60 Query: 68 YFNPFGKNLMTASKGIFDEQNP-----PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 YFNP MT + F + E +++ + +++ + Q K Sbjct: 61 YFNPIKLVDMTPMQKGFRNPSEKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSK 120 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + E+ +F + +E +L + +++D E + Y P Sbjct: 121 LAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASDAEVENKGADVYRDP 174 >gi|94970509|ref|YP_592557.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94552559|gb|ABF42483.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 264 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K + +L +++ + + + + K + T G+ I +++ FD S+ P Sbjct: 83 TKDNMPELKEQLQRAIRKMNNFEQLKKQIEITVTSEGLRIELLESAAGTFFDSGSARPND 142 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVS 305 +L+ + L + ISI GHTD+ PF N + NW LS DRA +A +++ SGV Sbjct: 143 SGKELLEMLAHELQNLPNTISIEGHTDSKPFVGNGSYSNWELSADRANAARRLMQDSGVR 202 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 +++S++ GFA L+ P + +NRRI ILV+ Sbjct: 203 GNQVSQVRGFADQNLRKKDAPEDPSNRRITILVQ 236 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MA F+V+W++N T K+AI YF Sbjct: 23 AWKVAYADFVTAMMALFIVLWLMN-TSKPVKEAISGYFKDPSGTAKKTGSAQSGTGENFT 81 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 + N +L ++ Q + E L S + R + Sbjct: 82 ITKDNMPELKEQLQRAIRKMNNFEQLKKQIEITVTSEGLRIELLESAAGTFFDSGSARPN 141 Query: 152 EKGKDLCK 159 + GK+L + Sbjct: 142 DSGKELLE 149 >gi|190574215|ref|YP_001972060.1| flagellar motor protein MotD [Stenotrophomonas maltophilia K279a] gi|190012137|emb|CAQ45760.1| putative chemotaxis protein MotB [Stenotrophomonas maltophilia K279a] Length = 338 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ ++ N+ +W I YAD MT+L+AFF+VM+ I++ ++ + + L Sbjct: 1 MARRKHHEEHANH-EAWAIPYADLMTLLLAFFVVMYAISSVNEGKYRIMAD-------AL 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A G NP + N Sbjct: 53 TDAFGGAPRTINPVQVG------------------------------------NKQVQGG 76 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S S T+ L S+ + + ++E+I +R+ L +A Sbjct: 77 GWDSPSVIKSGTKIGPSAPAPSHDPTLLPSMASQMRMPVSVHNQEQIARAERQ--LNSIA 134 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++++ L+ L+ + + T I + I + +F S+ L + Sbjct: 135 DRLTAALAPLIDRGM---ISVRRTELWIEVEI---NSDILFPTGSAALDVHARQTLASLA 188 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 EVL + + GHTD P NW LS RA S + GV R++ + G+ Sbjct: 189 EVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLAMV-GY 247 Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339 R + +D + NRR+ +++ Sbjct: 248 GQFRPREENDSAQGRNRNRRVMVIIL 273 >gi|254523338|ref|ZP_05135393.1| MotB protein [Stenotrophomonas sp. SKA14] gi|219720929|gb|EED39454.1| MotB protein [Stenotrophomonas sp. SKA14] Length = 338 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ ++ N+ +W I YAD MT+L+AFF+VM+ I++ ++ + + L Sbjct: 1 MARRKHHEEHANH-EAWAIPYADLMTLLLAFFVVMYAISSVNEGKYRIMAD-------AL 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A G NP + N Sbjct: 53 TDAFGGAPRTINPVQVG------------------------------------NKQVQGG 76 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S S T+ L S+ + + ++E+I +R+ L +A Sbjct: 77 GWDSPSVIKSGTKIGPSAPAPSHDPTLLPSMASQMRMPVSVHNQEQIARAERQ--LNSIA 134 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++++ L+ L+ + + T I + I + +F S+ L + Sbjct: 135 DRLTAALAPLIDRGM---ISVRRTELWIEVEI---NSDILFPTGSAALDVHARQTLASLA 188 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +VL + + GHTD P NW LS RA S + GV R++ + G+ Sbjct: 189 DVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLAMV-GY 247 Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339 R + +D + NRR+ +++ Sbjct: 248 GQFRPREENDSAQGRNRNRRVMVIIL 273 >gi|194365634|ref|YP_002028244.1| flagellar motor protein MotD [Stenotrophomonas maltophilia R551-3] gi|194348438|gb|ACF51561.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 338 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 56/326 (17%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ ++ N+ +W I YAD MT+L+AFF+VM+ I++ ++ + + L Sbjct: 1 MARRKHHEEHANH-EAWAIPYADLMTLLLAFFVVMYAISSVNEGKYRIMAD-------AL 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A G NP + N Sbjct: 53 TDAFGGAPRTINPVQVG------------------------------------NKQVQGG 76 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S S T+ L S+ + + ++E+I +R+ L +A Sbjct: 77 GWDSPSVIKSGTKVGPSAPAPSHDPTLLPSMASQMRMPVSVHNQEQIARAERQ--LSSIA 134 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++++ L+ L+ + + T I + I + +F S+ L + Sbjct: 135 DRLTAALAPLIDRGM---ISVRRTELWIEVEI---NSDILFPTGSAALDVHARQTLASLA 188 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 EVL + + GHTD P NW LS RA S + GV R++ + G+ Sbjct: 189 EVLRDVPNSVRVEGHTDNVPIATATFPSNWELSAGRAASVVHLFADQGVQPSRLAMV-GY 247 Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339 R + +D + NRR+ +++ Sbjct: 248 GQFRPREENDSAQGRNRNRRVMVIIL 273 >gi|90422620|ref|YP_530990.1| flagellar motor protein MotB [Rhodopseudomonas palustris BisB18] gi|90104634|gb|ABD86671.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 423 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 2/266 (0%) Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 G A + FD + P + D ++ N + + + Q +R Sbjct: 155 GMKGGEAYRDPFDPISWPMAQTSPLDDKALGRKEAGNLPFDEAAAALSEGQGRRPSQGTP 214 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + Q + SE +D + L + + + Sbjct: 215 DATAAPQDAEPPKAAPASSEPQQDRPRPVGLFADDATKTGAPGNRPAGARGDTTPAANAA 274 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L I++ L+ L A V V T G+LIS+ D N MF S+ P P + L Sbjct: 275 GKLQATITAALATLGAARPVTEV--RETTEGLLISLTDDVNYGMFATGSAAPSPGLVRAL 332 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 KI ++A + + +RGHTD +R+ DNWRLS RA+ AY +L++ G+ RI +I Sbjct: 333 DKITPLIAQNRGQMIVRGHTDNRAYRSAEYDNWRLSTARAHMAYYMLIRGGLDAGRIERI 392 Query: 313 SGFAHHRLKIASDPMNSANRRIDILV 338 G+A R K +DP + NRRI++L+ Sbjct: 393 EGYADRRPKDPNDPSAAPNRRIELLI 418 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 7/187 (3%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 Q+ + III+++ ++D N G WKI YADFMT +MAFFLVMW+INAT+ +T++++ Sbjct: 3 EQDRPELIIIRRRNSLDVEEKN-GVWKIAYADFMTAMMAFFLVMWLINATNPETRESVAA 61 Query: 68 YFNPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD-LKIGSTNQKKQYQ 125 YFNP + KGI D P R K D +E + + Q +Q Sbjct: 62 YFNPIKLTDSTPDRKGIHD----PRRVDPGKADEGDNERPHPEPDNAAQPAPRQQPEQSH 117 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 E +F + SE D K + F P + Sbjct: 118 PDEAALFRDPYAVLSEIAGGPPRAAQAGSAPEATRKDGMKGGEAYRDPFDPISWPMAQTS 177 Query: 186 MKRKKRL 192 K L Sbjct: 178 PLDDKAL 184 >gi|294339857|emb|CAZ88220.1| putative outer membrane OmpA/MotB protein [Thiomonas sp. 3As] Length = 293 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 114/324 (35%), Gaps = 76/324 (23%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N W + YADF+T+L AFF+VM+ I++ ++ K + Sbjct: 3 RKKAHEEHENHERWLVSYADFITLLFAFFVVMYSISSLNEGKYKVL-------------- 48 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 SQ I + T N V + Q + + Sbjct: 49 --------------SQTMIAAFTGQPTTPNPVQVG----------QPFNSMPSAIDLPPI 84 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + K + G A + +K LQ +A+KI Sbjct: 85 PKQQKPEIIEPGRGGPG----------------------------AKEVQKTLQGVAEKI 116 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + V T G++I I D +F + P+ +L +I VL Sbjct: 117 QTLLASAIRKG---DVRVRMTPLGVVIDIHDT---VLFASGQAALTPQAQDLLNQIAGVL 170 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + G TD P NW LS RA S ++ ++ GV +++ +G+ + Sbjct: 171 QGVAYPIQVNGFTDDRPINTPQFGSNWALSSARAVSVVEMFIEQGVKPEQLVA-AGYGQY 229 Query: 319 RLKIASDP--MNSANRRIDILVED 340 ++D +ANRR+ +++ Sbjct: 230 HPVESNDTAKGRAANRRVSVVIVS 253 >gi|110632645|ref|YP_672853.1| flagellar motor protein MotB [Mesorhizobium sp. BNC1] gi|110283629|gb|ABG61688.1| OmpA/MotB [Chelativorans sp. BNC1] Length = 452 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 114/278 (41%), Gaps = 4/278 (1%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 E Y +PF + + + + + D + G +++ Sbjct: 178 EAYRDPFAPDFWSQQVAMPRIGVEGDPDEAREQPSGADIKAEQTGQHQLAGIEPEQETSD 237 Query: 126 RLE-NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 L + + E + + E G + S P + Sbjct: 238 ALSLKRVPQVEPLAPEEKNEPATEGVPEDGVQSASPGNESASEEVSATAGEPDAPANEKA 297 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + ++ L+G + + V G+LIS+ D MF S++P Sbjct: 298 NEAHENAAAGIRAALAQALNG---EGLASSVTVSAGEEGVLISVTDDIRNGMFPVGSAVP 354 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 + ++KIG+ LA I I GHTDA PFR+ DNWRLS RA++A +L++ G+ Sbjct: 355 ERALVGAMEKIGKTLAGQPGTIRIHGHTDARPFRSDTYDNWRLSTARAHAAQYMLIRGGL 414 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E RI++++GFA +LK P+ ANRRI+IL+E Q Sbjct: 415 DETRITEVAGFADRKLKEPESPLADANRRIEILLEVPQ 452 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 11/191 (5%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 +++ + II+++ +D+ ++ G WKI +ADFMT +M FFLVMW+INA ++ T+ A Sbjct: 4 ATEDERQPEIIIVRRGGDDEDSEHHGGVWKIAFADFMTAMMCFFLVMWLINAANEQTRAA 63 Query: 65 IEQYFNPFG-KNLMTASKGIFDEQNPPE------RSSQNKIDLSIDEHITKNSVDLK--- 114 + YFNP + T KG+ + P+ +S ++ S + T D + Sbjct: 64 LASYFNPVKLIDRNTNRKGLEEVGQGPQVSTEADQSEKSTDQPSGENDKTSGPADFQNAT 123 Query: 115 -IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 + T + N L+ +++R E G + + + Sbjct: 124 DLADTRKYSDQNFFSNPYAVLAEIAADVGQDQNVSRKGEGGVQIAGPSSGASGGEAYRDP 183 Query: 174 FLPPLSKEKIL 184 F P +++ Sbjct: 184 FAPDFWSQQVA 194 >gi|313672698|ref|YP_004050809.1| ompa/motb domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939454|gb|ADR18646.1| OmpA/MotB domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 276 Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 1/194 (0%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + G + T +K+ + + +I A + + + + + + +++ Sbjct: 69 EKAGGSIMEGGTGKPFEADKKGQAQIVEKIEVEIAATATENNGEKVKESLMGVVKTQLSE 128 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 ++ TT GI I +ID+ P+F S+ VL+ + L + I I Sbjct: 129 -FSDQIMVSTTPEGIRIDVIDKTGNPIFSSGSASLNTNGKAVLKVLANTLNELSNKIVIE 187 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA +R NW LS+ RA +A L+ +G ++IS ++G+A R + +P + Sbjct: 188 GHTDAMTYRGDKNGNWDLSIQRANNARAELLLNGYDANKISSVAGYAATRPIVKDNPNDP 247 Query: 330 ANRRIDILVEDRQG 343 NRRI L+ + Sbjct: 248 MNRRISFLILYDKA 261 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 92/244 (37%), Gaps = 18/244 (7%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 + ++ G+WKI YADF+T +MAFFLVMW++N T ++ + I YF F + Sbjct: 17 EGGGHHGGAWKIAYADFVTAMMAFFLVMWLLNMTSEEKRAKIAMYFRTFSIFEKAGGSIM 76 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 P + + +++ ++++I +T + ++++ ++ + +Q SE Sbjct: 77 EGGTGKPFEADKKGQAQIVEK------IEVEIAATATENNGEKVKESLMGVVKTQLSEFS 130 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + +G + I S L K L+ LA ++ Sbjct: 131 DQIMVSTTPEGIRIDVIDKTGNPIFS---------SGSASLNTNGKAVLKVLANTLNELS 181 Query: 204 SGLVADNIVKGVLFETTRTG---ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + +V + + + + G + I + + ++ ++ Sbjct: 182 NKIVIEGHTDAMTYRGDKNGNWDLSIQRANNARAELLLNGYDANKISSVAGYAATRPIVK 241 Query: 261 HSTE 264 + Sbjct: 242 DNPN 245 >gi|90022860|ref|YP_528687.1| flagellar motor protein MotB [Saccharophagus degradans 2-40] gi|89952460|gb|ABD82475.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 329 Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 119/328 (36%), Gaps = 59/328 (17%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 D P L W +AD M++LM FF+++ + D K + F Sbjct: 10 DCPAGLPPWMGTFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGSM-----------AQAF 58 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 QN + K I + + + Sbjct: 59 GVQNKLNVTDIPKGTSIIAQEFSPGRPEPTP----------------------------- 89 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + +K DL + + LE +E + + A+K K++L++L + Sbjct: 90 --INEIWQKTDDLTEMS-LEVQCAEEYDIEQGTEGYDAGAALKVKQKLEELLEDTQDD-- 144 Query: 205 GLVADNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 A + + + T I I II R F S+ E VL+++ V Sbjct: 145 ---AYELAAAMHEQITEGQIEIETRGRMIIIRIREKGSFVSGSADLSVELKDVLKEVKSV 201 Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 LA I ++GHTD P R+ NW LS R+ S LM G +R +++G+A Sbjct: 202 LALRQGKIEVQGHTDNVPIRSARFGSNWALSSARSVSVAHELMAGGDIAERRFEVAGYAD 261 Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343 + +D + NRR++IL+ +QG Sbjct: 262 TMPIVPNDSAENRAINRRVEILI--KQG 287 >gi|292489120|ref|YP_003532007.1| chemotaxis protein MotB [Erwinia amylovora CFBP1430] gi|292900239|ref|YP_003539608.1| motility protein B [Erwinia amylovora ATCC 49946] gi|291200087|emb|CBJ47213.1| chemotaxis protein (motility protein B) [Erwinia amylovora ATCC 49946] gi|291554554|emb|CBA22155.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora CFBP1430] gi|312173278|emb|CBX81533.1| Chemotaxis protein motB (Motility protein B) [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMF 237 +K+ K + L+ + ++ + + N ++ T G++I I D + PMF Sbjct: 100 QVDKLDKFKNVESLKKVKTRLETMIESDPRLSNFKSNLMLTLTDDGLMIQITDSQERPMF 159 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSA 295 S P +LQ + +L +S+ GHTD+ + + NW LS RA +A Sbjct: 160 KTGSEAPESYMNGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGYSNWELSTGRANAA 219 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +VL+ +G+ +DRI ++ G N NRRI +LV + Sbjct: 220 RRVLINAGLDDDRILRVIGTGSRMGLADISADNPMNRRISVLVLSK 265 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 II ++K ++ G+WKI YADFMT +MAFFLVMW++ ++ D ++ I YF Sbjct: 6 PIIRQRKRKHKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPI 65 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 K M ++ + I + K+ VD N + + Sbjct: 66 KPTMGQGNKTSFSESIIPGGGDDVIRQEG--EVYKHQVDKLDKFKNVESLKKVKTRLETM 123 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + + + K++L + + TD ++ + P IL + L Sbjct: 124 IESDPRLSNFKSNLMLTLTDDGLMIQITDSQERPMFKTGSEAPESYMNGIL-----QALV 178 Query: 194 DLAKKISSTLS 204 L K++ ++LS Sbjct: 179 PLLKELPNSLS 189 >gi|119385422|ref|YP_916478.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222] gi|119375189|gb|ABL70782.1| putative chemotaxis MotB protein [Paracoccus denitrificans PD1222] Length = 266 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 79/332 (23%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 IIIKK D ++ G+WK+ YADF+T +MA F ++ + + ++ Sbjct: 9 PIIIKKVQGGGDAGHHGGAWKVAYADFVTAMMA-FFLLMWLLNATTEKQR---------- 57 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 +G+ D NP S T++ D G Q + Sbjct: 58 -------QGLADYFNPTLIQS------------TRSGHDGPFGGEVQDAE---------- 88 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 ++ + + ++SL ++ G+D + Sbjct: 89 TNSGKGAGASRDSLAARTQDGRDTG---------------------------------FE 115 Query: 194 DLAKKISSTLSGLVAD-----NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 D+A+ I L+G A+ N+++ V+ T G++I + D + P+F S+ P P Sbjct: 116 DMARHIQDQLTGSGAESLQKVNLLRHVVTRMTDEGLVIELTDLMDEPLFVGDSAQPTPAM 175 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + VL I++ GH A P I W LS RA++ +L +G R Sbjct: 176 KELAGILSGVLGRVRNEIALTGHVRAYPEMLIQSPVWALSDARAHALRNLLEGAGFDTTR 235 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 I +++ FA R + +PM+ N RI++++ Sbjct: 236 IQRVTAFADRRNRSV-NPMDPDNNRIEVILLR 266 >gi|24375768|ref|NP_719811.1| flagellar motor protein MotB [Shewanella oneidensis MR-1] gi|24350713|gb|AAN57255.1|AE015861_7 chemotaxis motB protein [Shewanella oneidensis MR-1] Length = 275 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 121/322 (37%), Gaps = 65/322 (20%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K D P N W I YADFMT+L A F+V++ +D + K + + Sbjct: 2 KKKKVDPPENHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVE------------ 49 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G+ D + S ++ + + + + + + Sbjct: 50 --GLIDSLSKIGLISTPAVNALAPGGTSILEPNTVTSAVDAEPKLIE------------- 94 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + SE DL + K ++ + I Sbjct: 95 ---TATTAPSTSESNNDLTNA--------------------------KSNDTIRKYKEII 125 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S+ L + + + V + ++I I D N F S+ P+ I ++ KIGEV+ Sbjct: 126 SAKLKNEIEN---QEVEIDEVSDNLIIRIGD--NNTFFASGSAFIQPKFIPLIDKIGEVI 180 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 A + I GHTDA+ I DNW LS RA + +++ K+ GV+ RI + G A Sbjct: 181 ASVPGRVVIAGHTDATLPMEIYADNWDLSSLRATAVVRIMTKNKGVNPSRII-VQGLADT 239 Query: 319 RLKIASDP--MNSANRRIDILV 338 + + +D NRRI+I++ Sbjct: 240 QPRFQNDTPEHRQKNRRIEIIL 261 >gi|330830900|ref|YP_004393852.1| sodium-driven polar flagellar protein [Aeromonas veronii B565] gi|328806036|gb|AEB51235.1| Sodium-driven polar flagellar protein [Aeromonas veronii B565] Length = 283 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 114/322 (35%), Gaps = 65/322 (20%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD M++LM FF+++ D K I N + + + Sbjct: 1 MGTFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSMDKAFGVQNILEVKDIPKGTSVIAQ 60 Query: 87 QNPPERSSQNKIDLSIDEHI--TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P R ID + + I T+ ++ G ++Q + + +Q Sbjct: 61 EFRPGRPEPTPIDTVMQQTIDLTQTELEFLPGESDQAGGQDKSDGKQTGGDTAQD----- 115 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 A K +++ LAK ++ + Sbjct: 116 ----------------------------------------AKKAQEQSNTLAKALAEQMK 135 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + D ++ E I+I I R F S+ P+ V++K+ +L Sbjct: 136 DQIQDGAIE---IEALGQQIIIRI---REKASFPAGSAFLQPQFWPVIRKVATLLKDVPG 189 Query: 265 VISIRGHTDASPFRN-IARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKI 322 I+I GHTD + + + NW LS RA + +Q+L G + R+ + G A + + Sbjct: 190 EITISGHTDNVATEDELFQSNWELSSQRAVAVAHQMLKVPGFDQGRLV-VQGMADSQPLV 248 Query: 323 AS-DPMNSA-NRRIDILVEDRQ 342 + P N NRR++I + + Sbjct: 249 PNTTPENRRMNRRVEIAIMQGK 270 >gi|225874275|ref|YP_002755734.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] gi|225793995|gb|ACO34085.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] Length = 270 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 2/153 (1%) Query: 188 RKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K+ ++++ +IS + + + + V T G+ I +++ + FD SS Sbjct: 83 KKQDIRNIKTQISEAMHAQIQLKALQNHVNMVVTPEGLRIELLEAKGGTFFDSGSSKLSA 142 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L+ + + L I+I G+TDA P+ NW LS DRA +A +++ SG+ Sbjct: 143 GGKEMLKLLAQQLGGVPNRITIEGYTDAKPYPGKDGYTNWDLSADRANAARRLMQASGLH 202 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +++++ G+ L++ + P + NRRI I+V Sbjct: 203 AGQVAEVRGYGDQNLRLPNKPFDPTNRRITIVV 235 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 21/237 (8%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + II+ +K + ++ G+WK+ YADF+T +M+ F+V+W++N + KK I YF Sbjct: 2 SPHRPIIVIRK-KVSHGGHHGGAWKVAYADFVTAMMSLFIVLWLMNTSTP-IKKIIAGYF 59 Query: 70 NPFGKNLMTAS---KGIFDE---QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 N G D+ + R+ + +I ++ I ++ + + Sbjct: 60 RDPKSNSALTGNDHNGATDDLTWKKQDIRNIKTQISEAMHAQIQLKALQNHVNMVVTPEG 119 Query: 124 YQ-----RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE-----KSINKEENY 173 + F +S+ S K L +++ + +E K ++ Y Sbjct: 120 LRIELLEAKGGTFFDSGSSKLSAGGKEMLKLLAQQLGGVPNRITIEGYTDAKPYPGKDGY 179 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILISII 229 LS ++ A +R + L + + G N+ + F+ T I+I+ Sbjct: 180 TNWDLSADRANAARRLMQASGLHAGQVAEVRGYGDQNLRLPNKPFDPTNR--RITIV 234 >gi|289807272|ref|ZP_06537901.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 135 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + + + G+ I IID +N PMF S+ P +L+ I VL IS+ G Sbjct: 12 LRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAG 71 Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 HTD P+ N NW LS DRA ++ + L+ G+ ++ ++ G A P + Sbjct: 72 HTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDD 131 Query: 329 SANR 332 + NR Sbjct: 132 AINR 135 >gi|300024596|ref|YP_003757207.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526417|gb|ADJ24886.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 424 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 121/274 (44%), Gaps = 8/274 (2%) Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L + D+ ++SQ+ S + + D + + QR + Sbjct: 148 ALFDNPGQLLDKLADEAKASQSMTAASPLDSSISDPFDRADRRSGKSSAAQRSASQPNPA 207 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK---- 190 + + K S +GKD K+ ++ + ++ + A K Sbjct: 208 PAAPPAATAKASPPPSGVEGKDAAKNARALEAQDTKQAATALNAKDQNHAANAPKPSDAA 267 Query: 191 --RLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + AKK+ +S +A + + T G+L+S++D + MF+ S+ P P Sbjct: 268 DVADEAKAKKLQDDISSALAKGSRAAPEIEVKATSEGLLVSLLDGADFGMFEVGSAKPRP 327 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 ++ + K+G+VL I +RGHTD+ ++N DNWRLS RA AY +L++ G++E Sbjct: 328 ALVLAMSKVGDVLKSLPGSIVVRGHTDSRAYKNGNYDNWRLSAARAQMAYYMLVRGGIAE 387 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 R + I G A KI S+ NRRIDIL+++ Sbjct: 388 TRFAAIEGRADRDPKIPSNREAPENRRIDILIKE 421 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 9/199 (4%) Query: 3 SHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK 62 S+G ++ + +I++++ D ++ G WKI YADFMT +MAFFLVMW+INA D T Sbjct: 2 SNGQEDVSSQPLVIVRRR-RSHDEEHHGGVWKIAYADFMTAMMAFFLVMWLINAADKKTI 60 Query: 63 KAIEQYFNPF-GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI-------TKNSVDLK 114 + YFNP + A KG+ D + ++ K + + +H + Sbjct: 61 VQVAAYFNPMRLTDRFEAPKGLEDLNEIDAKQNEEKSEKGLSQHPDQAQKLSAPKASKAN 120 Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 IG ++ +R + + +Q+ E ++ + +K D K++ + + ++ Sbjct: 121 IGEAMDEEAQKRSASAGGKSAEAQKEEALFDNPGQLLDKLADEAKASQSMTAASPLDSSI 180 Query: 175 LPPLSKEKILAMKRKKRLQ 193 P + + K + Sbjct: 181 SDPFDRADRRSGKSSAAQR 199 >gi|255744684|ref|ZP_05418635.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101] gi|262161183|ref|ZP_06030294.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1] gi|262168686|ref|ZP_06036381.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27] gi|255737715|gb|EET93109.1| Flagellar motor rotation protein MotB [Vibrio cholera CIRS 101] gi|262022804|gb|EEY41510.1| Flagellar motor rotation protein MotB [Vibrio cholerae RC27] gi|262028933|gb|EEY47586.1| Flagellar motor rotation protein MotB [Vibrio cholerae INDRE 91/1] Length = 294 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 113/311 (36%), Gaps = 47/311 (15%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDEQNPPERS 93 M++LM FF+++ + D K I N + I ++ P R Sbjct: 1 MSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEFRPGRP 60 Query: 94 SQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 ID+ + + IT+ +++ + G +++ QR + +++ S + + Sbjct: 61 EPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLTGGQSAETSVQDNQNTQSE- 119 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 ++ A ++++ +A+ I LS + Sbjct: 120 ----------------------------MQQQQAQAMSEQMETVAESIKKALSREIEQGA 151 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + E I I I R F + S+ P+ ++++I E++ + + GH Sbjct: 152 ---IEVENLGQQIDIRI---REKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGH 205 Query: 272 TDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TD + R NW LS RA S Q + K + ++ G A + +D Sbjct: 206 TDNQKLDSELYRSNWDLSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQR 265 Query: 331 --NRRIDILVE 339 NRR++I + Sbjct: 266 ATNRRVEISIL 276 >gi|218658934|ref|ZP_03514864.1| flagellar motor protein MotB [Rhizobium etli IE4771] Length = 151 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 96/150 (64%), Gaps = 1/150 (0%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K +I+ + G VA + +G+ G+L+SI DQ + MF+ S++P E + Sbjct: 1 KEADAFQHQIAQQIGG-VAGKLAEGLTVTAAEGGLLVSISDQNDDSMFNIGSAVPRQEMV 59 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + +++IG +L ++IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RI Sbjct: 60 LAMERIGTILKERGGAVAIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRI 119 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILVE 339 S++SGFA RLK+ ++P N+ANRRI+ILV+ Sbjct: 120 SQVSGFADRRLKLPAEPFNAANRRIEILVQ 149 >gi|158422249|ref|YP_001523541.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] gi|158329138|dbj|BAF86623.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] Length = 472 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 3/270 (1%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + G F + N+ +G + + + Sbjct: 199 PDAAVSARGGGDFATDGDVFSPQPQDAAEAQASAQQANAQATAVGGNGAPAAAPKADPSK 258 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK---R 188 + + S + + KG + + ++ A Sbjct: 259 LDATKAAPSAGKGDMAQGELAKGDAANGAQAKGAAAKGDQAKGEQAKGDANAGAATFKID 318 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L + + + + V T+ GI++S+ D N MF S++P Sbjct: 319 QANADKLKTEAVAAVQSNLGSVAAPKVDVRVTKEGIVLSLTDDINYSMFPVGSAVPDGRL 378 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + KIGE L + IRG+TD P+R+ DNWRLS RA+ Y +L++ G+ E R Sbjct: 379 VRAMAKIGEALGKRPGEVVIRGYTDGRPYRSDTYDNWRLSTARAHMTYYMLVRGGLQEPR 438 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ I G+A LK ++P + NRRI+IL+ Sbjct: 439 VAMIEGYADRNLKNKAEPYAAENRRIEILL 468 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 4/183 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ + IIIK+ + + +WK+ +ADFMT +MAFFL+MW+IN TD D +KAI YF Sbjct: 6 EHHELIIIKRHEDEEHEHH-SSAWKVAHADFMTAMMAFFLIMWLINVTDKDVRKAIASYF 64 Query: 70 NPFG-KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP MT KG+ + ++ + D T + GS Q+ + R Sbjct: 65 NPVHLAESMTERKGLNEPEDIKPDGTSADGDQKSALKETAGAG-TGPGSDTQRGKQDRAA 123 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 Y S+ + S + + + + F P + R Sbjct: 124 FQDPYAVLSKLAGEADPSEMSTPDAAVGETGQPG-NSAGDAVRDPFDPVYWQMNQARKMR 182 Query: 189 KKR 191 ++ Sbjct: 183 TEK 185 >gi|296135687|ref|YP_003642929.1| OmpA/MotB domain protein [Thiomonas intermedia K12] gi|295795809|gb|ADG30599.1| OmpA/MotB domain protein [Thiomonas intermedia K12] Length = 298 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 114/324 (35%), Gaps = 76/324 (23%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N W + ADF+T+L AFF+VM+ I++ ++ K + Sbjct: 3 RKKAHEEHENHERWLVSDADFITLLFAFFVVMYSISSLNEGKYKVL-------------- 48 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 SQ I + T N V + Q + + Sbjct: 49 --------------SQTMIAAFTGQPTTPNPVQVG----------QPFNSMPSAIDLPPI 84 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + K + G A + +K LQ +A+KI Sbjct: 85 PKQQKPEIIEPGRGGPG----------------------------AKEVQKTLQGVAEKI 116 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + V T G++I I D +F + P+ +L +I VL Sbjct: 117 QTLLASAIRKG---DVRVRMTPLGVVIDIHDT---VLFASGQAALTPQAQDLLNQIAGVL 170 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + G TD +P NW LS RA S ++ ++ GV +++ +G+ + Sbjct: 171 QGVAYPIQVNGFTDTTPIHTAQFPSNWALSAARAVSVVEMFIEQGVKPEQLVA-AGYGQY 229 Query: 319 RLKIASDP--MNSANRRIDILVED 340 ++D +ANRR+ +++ Sbjct: 230 HPVESNDTAKGRAANRRVSVVIVS 253 >gi|86749921|ref|YP_486417.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86572949|gb|ABD07506.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 274 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 116/325 (35%), Gaps = 75/325 (23%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNL 76 KKK+ + T + W + +AD M +L+AFF+V+ + D + + + FG Sbjct: 12 KKKLDDEHTGHG---WYVSFADLMGLLVAFFVVLVSYSTQDVKKLQIVAGSMRDAFGVQH 68 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G + P + K D N+ + G Q + ++ Sbjct: 69 QARYSGAVETDGTPVQGRVAKTD---------NAALDQAGGAGSSAQAKAEREFALASAS 119 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +Q A++ L +L+ Sbjct: 120 LRQ---------------------------------------------ALQDVPELSELS 134 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K +V + G+ E T PMF SS+P T +++ K+ Sbjct: 135 K-------NVVFEETPTGLNLELTDQ---------DGRPMFADGSSVPYERTRLLIAKLA 178 Query: 257 EVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L ++ ++I GHT A+ N D++ LS RA + Q+L + G+S +R+ ++G Sbjct: 179 APLRATSLRVNIVGHTAATAVPANGDYDSFDLSTGRANAVRQILKREGLSSNRVMSVAGK 238 Query: 316 AHHRLKIASDPMNSANRRIDILVED 340 PM +ANRR+ I + Sbjct: 239 GDGEPLFPEAPMLAANRRVTISLLR 263 >gi|317121531|ref|YP_004101534.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885] gi|315591511|gb|ADU50807.1| OmpA/MotB domain protein [Thermaerobacter marianensis DSM 12885] Length = 343 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 110/313 (35%), Gaps = 59/313 (18%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YAD +T+L+AFF+VM+ ++ + R Sbjct: 74 WLLTYADLITLLLAFFVVMYAMSEVNA-------------------------------TR 102 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 L ++ G + ++ N + N ++ Sbjct: 103 YRALAASLRAAFATAGEALIDTKGISPDARKVLDGLNQDTGQPFPPSTAPGTNPAPEENP 162 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G+ + E +RL+DL ++++ L + Sbjct: 163 GGQGEGPGRLPVVTGPPGEE-----------------ERLRDLVDQVNAALR---DAGLG 202 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + T G+ I DQ FD + PE +L+++ +LA I + GHT Sbjct: 203 GRASAQLTDRGVAIIFEDQ---VFFDLGRADLRPEGRELLRRLAPILARVPGTILVEGHT 259 Query: 273 DASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 D P + NW LS RA + + L ++G+ R++ +G+ R + + + Sbjct: 260 DNLPIHSDRFPSNWELSTARATTVVRFLAEQAGLDPRRLAA-AGYGEWRPRFPNTSEANR 318 Query: 329 SANRRIDILVEDR 341 + NRR++I+V + Sbjct: 319 ARNRRVEIVVLRQ 331 >gi|308273452|emb|CBX30054.1| hypothetical protein N47_D28630 [uncultured Desulfobacterium sp.] Length = 307 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 2/173 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILI 226 ++++ LP + L+ A+KI+ T+S N K + T+ G+ I Sbjct: 78 DEQKPLSLPASPIAVDKRAFEMELLKSEAEKITKTISQTPEFNKFKDKITVTVTQEGMRI 137 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNW 285 ++++ FD P+T+ +LQ I + LA I I G+TDA P+ + NW Sbjct: 138 DLLEESEGLFFDIGKIHIKPDTVKLLQVIAKSHLAKLKNGIIIEGYTDARPYVSSDYTNW 197 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 LS +RA SA +VL +SG+ +D+I ++ GFA +L++ PM+ +NRR+ IL+ Sbjct: 198 ELSTERANSARKVLEESGLRKDQILEVRGFADRKLRLPDKPMDFSNRRVSILL 250 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 + E+ Q II+ K ++ G+WK+ YADF+T +MA F+V+WI+ + K I Sbjct: 2 DDEHIQPIIVV-KKVKGHGGHHGGAWKVAYADFVTAMMALFIVLWIVG-QSKEVKHYIGA 59 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL---SIDEHITKNSVDLKIGSTNQKKQY 124 YFN G G+ ++ P + I + + + + K+ + + +Q ++ Sbjct: 60 YFNDPGVFTNGRYGGVLPDEQKPLSLPASPIAVDKRAFEMELLKSEAEKITKTISQTPEF 119 Query: 125 QRLENNIFYLSNSQ 138 + ++ I + Sbjct: 120 NKFKDKITVTVTQE 133 >gi|331006559|ref|ZP_08329851.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] gi|330419628|gb|EGG94002.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] Length = 325 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 119/321 (37%), Gaps = 54/321 (16%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 L +W +AD M++LM FF+++ + D K + Sbjct: 13 GLPAWMATFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGSMA------------------ 54 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 G Q K + + + Sbjct: 55 ------------------------QAFGVQTQLKVTDVPKGTSIIAREFSPAIPEPTPIN 90 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 +K D+ + + + + E + + KE + +K K++L+DL ++ + + +A Sbjct: 91 EIWQKTADITQMSLEVRQVE-EYDVEAGDIDKEAGVKLKIKQQLEDLIRE-TQNDARELA 148 Query: 209 DNIVKGVL---FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 +++ + ++ E G I I+ R F S I + V+ I E + Sbjct: 149 NDLREQIVAGEIEIETDGRKI-IVRIREKGSFQSGSHIMNDDYYDVMDDIREAVLTKPGK 207 Query: 266 ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 I ++GHTD P R+ NW LS RA S Q LM V R +SGFA + + + Sbjct: 208 IQVQGHTDNIPIRSARYRSNWELSTARAVSVAQALMDGDVDPRRFE-VSGFADTQSLVDN 266 Query: 325 D--PMNSANRRIDILVEDRQG 343 + S NRR++I++ RQG Sbjct: 267 NSEENRSRNRRVEIVI--RQG 285 >gi|149909329|ref|ZP_01897985.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36] gi|149807646|gb|EDM67594.1| sodium-driven polar flagellar protein MotB [Moritella sp. PE36] Length = 290 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 107/312 (34%), Gaps = 36/312 (11%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 +AD M++LM FF+++ + D K I F QN E Sbjct: 1 MGTFADLMSLLMCFFVLLLSFSEMDVVKFKQIAGSMQHA-----------FGVQNQIEVK 49 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 + K I + D T + E + + Q+ KN L DS Sbjct: 50 NIPKGTTVIAQEFRPGRPDPTPIETIMQHTIDNSEAELDFKDGEDQNAGGKNKLAEDSNG 109 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 GK ST E + +L K ++ L + Sbjct: 110 GKSPETSTRDNTPTQNIEVT----------------EDTSELVKALAEALKEEIDSG--- 150 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 GV E I+I I F S+ P V+QK+ ++LA +I+I GHT Sbjct: 151 GVEVENLGQQIIIRI---NEKGSFPSGSAFLQPRFRPVIQKVAQLLATIPGIITIAGHTG 207 Query: 274 ASPFRN-IARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 + + R W LS RA S +L +E+R+ + G A + + N Sbjct: 208 KEQLHSELYRSKWDLSSQRAVSVAHEMLKVKEFTENRLI-VQGMADTQPLTDDENELRRN 266 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 267 RRVEISIMQGKA 278 >gi|303248999|ref|ZP_07335244.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489585|gb|EFL49525.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 317 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 116/317 (36%), Gaps = 39/317 (12%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--PP 90 W I AD MT+L+ FFL++ ++ D + + + A K E Sbjct: 26 WPISLADMMTLLLCFFLLIVAVSHVDLNRYERVADSMQKAMVTEKPAPKPKKAEPKPVVK 85 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + + +++ S T++ E + ++ + + + Sbjct: 86 KTTPPKPQPKPVEQPAMVRSKVSHTTLTSEPVAPLAQEKPKPEPTPAKPAAPTEQPKPAE 145 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 S K + + + E++ +K L+D+ K++++ L Sbjct: 146 SVKAETKAPAPESERTGP-------------------TRKSLEDIRKELTAKLG------ 180 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + E + + R FD +S+ P + +L+ I L+ + +++ G Sbjct: 181 -LDTSAVEIVPRENGVELN-LRGAAFFDLASAEIKPAALPLLRDIAATLSGTPYKVTVEG 238 Query: 271 HTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328 HTD P + + NW LS RA + L+ GV + + ++ G A + +D Sbjct: 239 HTDNLPIESWLYPSNWELSSARASRVARFLIDGGVPRNHL-RVEGLADTQPVAPNDDEAG 297 Query: 329 -------SANRRIDILV 338 + NRR+ ILV Sbjct: 298 RPIPENQAKNRRVVILV 314 >gi|289208360|ref|YP_003460426.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943991|gb|ADC71690.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 305 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 119/324 (36%), Gaps = 60/324 (18%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N +W I Y D +T+L+AFF+VM+ I++ DD + + + +L+ A Sbjct: 3 RRKRHEEAENHEAWAIPYGDLVTLLLAFFVVMYAISSVDDGKYRVLSE-------SLVDA 55 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + S+DE +D++ G + Sbjct: 56 FRAPAQTDPIQVGEPTVSREQSLDEMRALVPIDVQPGIVD-------------------- 95 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + S D +L+K + + L ++A ++ Sbjct: 96 -DGVAPIDMAFSGLLDDAGTDDELQKFL----------------------EALAEVADEL 132 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 ++ L+ D + + I I + +F S+ PE +L ++G +L Sbjct: 133 EMAMAPLIEDG---DLRVSREAYWLEIEIT---SRLLFGSGSATLNPEARSLLDEVGAIL 186 Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A + + GHTD P + NW LS RA + V +G+ + + G+ H Sbjct: 187 APRVSRVHVEGHTDNVPIQTAVYPSNWELSSGRAAAVVSVFEDAGIEPKNLVAL-GYGEH 245 Query: 319 RLKIASDPM--NSANRRIDILVED 340 R ++D + NRR+ I+V Sbjct: 246 RPVASNDTEQGRAENRRVAIVVLP 269 >gi|325290746|ref|YP_004266927.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966147|gb|ADY56926.1| OmpA/MotB domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 273 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 120/326 (36%), Gaps = 72/326 (22%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + P N W I Y+D +T+LM FF+VM+ ++ D+D +A Sbjct: 3 RKKHSEAPENHERWLITYSDLITLLMIFFVVMYSMSKVDNDKFRA--------------- 47 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + D N S +I + Q Sbjct: 48 ---MADALNMTLGGSPGRISI-------------------------------------AQ 67 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + + + STD E S ++N + E + + K +L +K Sbjct: 68 TSGGDSLIETGGPQNNPQSASTDPESSGQLQKNN-SGNVDMETMTILDIKAKLDQFSK-- 124 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 A+ I ++ T G+++SI D +F S+ P + +LQKI VL Sbjct: 125 --------ANGIESKLISSTEERGLVVSIQDT---LLFQPGSAEISPNALDILQKISSVL 173 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A S I + GHT P NW LS+ RA + +L +SG + +G+ Sbjct: 174 AASQNYIKVEGHTCTLPIHTSQYRSNWELSVIRATNVVHILAESGQINSKRLSATGYGEF 233 Query: 319 RLKIASDPMNSA--NRRIDILVEDRQ 342 R ++D NRR+D+++ + Sbjct: 234 RPIASNDTDEGRIKNRRVDLIILRSK 259 >gi|159045920|ref|YP_001534714.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12] gi|157913680|gb|ABV95113.1| chemotaxis protein MotB [Dinoroseobacter shibae DFL 12] Length = 272 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 128/332 (38%), Gaps = 69/332 (20%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + +IIK+K + ++ G+WK+ YADF+T +MA F ++ + + ++ Sbjct: 4 DTPAPVIIKRKKVVAGGGHHGGAWKVAYADFVTAMMA-FFMLMWLLNATTEKQR------ 56 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 KGI D NP + + + + + Sbjct: 57 -----------KGIADYFNP----------------------TIPVNRISGGGEGMFGGD 83 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 NIF + +S + + S S+ + L + Sbjct: 84 NIFSDVSLARSGTGGSENSSRS---------------------------SQLEALRAAEE 116 Query: 190 KRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 R+Q L++ + + VA+ + + V T G+++ + DQ +F S+ Sbjct: 117 ARMQALSEDLLGLSGESDVAEQLRRHVSTRVTDRGLVVDLFDQGEATVFVPGSTELTLLG 176 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L+ I EV + +SI GH + P RD W +S RA+ A L G +E R Sbjct: 177 KALLKVIHEVFSVVDNPLSITGHVPSQPVVLRERDAWEVSTSRAHVARSTLESYGFAESR 236 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 I K++G A + D ++S N R++I++ Sbjct: 237 IMKVAGQADRKPAAYPD-ISSKNNRLEIVLLR 267 >gi|88704266|ref|ZP_01101980.1| motB family protein [Congregibacter litoralis KT71] gi|88701317|gb|EAQ98422.1| motB family protein [Congregibacter litoralis KT71] Length = 286 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 116/313 (37%), Gaps = 56/313 (17%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 +AD M++LM FF+++ D K I K F QN E Sbjct: 1 MATFADLMSLLMCFFVLLLSFAEMDVQKFKQIAGSM-----------KVAFGVQNEFELE 49 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 K + + I T Q+ Q + ++ Sbjct: 50 DIPKGTSVVATEFSPGETSDTIVDTIQQVTDQTTDPSLRV-------------------- 89 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G+ + ++ E+ + ++ L ++ + A K K L+D + Sbjct: 90 GEGELEDSEAEELLQQKITALL---AETEADADKLKDMLEDEVQ--------------TG 132 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V E+ I + I R F S+ + + V+ +I E L ISI GHTD Sbjct: 133 KVDVESDGRTITVRI---REQGSFPSGSATLNTDFVPVMARIREALTEIPGTISIEGHTD 189 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 ++P R NW LS RA S L++ G+ +D + GFA R +D ++ Sbjct: 190 STPLRGGRYESNWGLSSSRALSVTHELLREGLLKDDRMMVVGFADTRPFTFNDTVEGRAS 249 Query: 331 NRRIDILVEDRQG 343 NRR++I++ RQG Sbjct: 250 NRRVEIVI--RQG 260 >gi|254517028|ref|ZP_05129086.1| flagellar motor protein [gamma proteobacterium NOR5-3] gi|219674533|gb|EED30901.1| flagellar motor protein [gamma proteobacterium NOR5-3] Length = 286 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 116/313 (37%), Gaps = 56/313 (17%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 +AD M++LM FF+++ D + K I K F QN E Sbjct: 1 MATFADLMSLLMCFFVLLLSFAEMDVEKFKQIAGSM-----------KVAFGVQNEFELE 49 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 K + + T Q+ + + ++ Sbjct: 50 DIPKGTSVVATEFSPGQTSDTPIETIQQITDETTDPSLRV-------------------- 89 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++E+ + ++ L ++ + A K K L+D + Sbjct: 90 GDGEMEDAEVEELLQQKITALL---AETQADAEKLKDMLEDETQ--------------TG 132 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V E+ I + I R F S+ + + V+Q+I + L ISI GHTD Sbjct: 133 KVDVESDGRTITVRI---REQGSFPSGSANLNTDFVPVMQRIRDALVEIPGTISIEGHTD 189 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 ++P R NW LS RA S L++ G+ +D + GFA R +D ++ Sbjct: 190 STPLRGGRYESNWGLSSSRALSVTHELLRDGLLKDDRMMVVGFADTRPFTFNDTVEGRAS 249 Query: 331 NRRIDILVEDRQG 343 NRR++I++ RQG Sbjct: 250 NRRVEIVI--RQG 260 >gi|304405743|ref|ZP_07387401.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] gi|304344986|gb|EFM10822.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] Length = 278 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 126/328 (38%), Gaps = 69/328 (21%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + SW I YAD MT+L+A F+V++ +++ D + + FN + Sbjct: 3 RRRKHEEHEEHADESWLIPYADLMTLLLALFIVLFSMSSVDAKRFDEMSRAFN----MAL 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+ D + L++ Sbjct: 59 DGGVGVLDNFRSVQTGKD--------------------------------------LNDE 80 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 ++ E K + + + D + + K K ++ L+ L K Sbjct: 81 KEREKSKQEQKQQTVTKTQQQQQQDDLEKLRK-----------------KEQEDLEKLKK 123 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + + + + + ++ +LI+I D ++ SS PE+ + Q I + Sbjct: 124 QLDQYIKSM---GLTTQLDTKLNQSQLLITISDN---ALYASGSSAVKPESRKLGQAIAK 177 Query: 258 VLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I + GHTD P N RDNW LS DRA + Q+L+ S + ++ +G+ Sbjct: 178 MLKQYPGYEIIVAGHTDNQPISNSDFRDNWDLSSDRALNFMQILLASAQLDPKLISSTGY 237 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341 R A++ S NRR+++ + + Sbjct: 238 GEFRPLTSNATEAGRSKNRRVEVSLMRK 265 >gi|311696900|gb|ADP99773.1| flagellar motor protein MotB [marine bacterium HP15] Length = 307 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 99/320 (30%), Gaps = 63/320 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 ++ + +W + +AD M++LM FF+++ + D K I SK Sbjct: 5 PEEEKPGIPAWVVTFADLMSLLMCFFVLLLSFSEIDAQKFKQIAGEL----------SKA 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 +++ P D+ + Q + E Sbjct: 55 FGVQRDVPALEIPKGTSPIFDKFSPAPPEPTVVNEVKQTTTDEAPELQTLKSPTDM---- 110 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + ++++Q+ I Sbjct: 111 ----------------------------------------AVEAAMEEQMQETMDDILKV 130 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L +AD + I I F S+ E +L + EV+ Sbjct: 131 LEPAIADG-----RINVSEDQRRIVIR-VEEKGSFPSGSAQLTWEFEGLLLDMAEVIEGI 184 Query: 263 TEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++I GHTD P R + NW LS R+ + VL+ E ++G A + + Sbjct: 185 PGDLTIEGHTDNVPIRTDRFYSNWDLSAARSAAVANVLVARDQVEPTRLSVTGLADTKPR 244 Query: 322 IASD--PMNSANRRIDILVE 339 + + + NRR++I+++ Sbjct: 245 VPNTSAENRAKNRRVEIIID 264 >gi|292493578|ref|YP_003529017.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291582173|gb|ADE16630.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 279 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 72/325 (22%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N W + YADF+T+L AFF+VM+ +++ ++ + + + Sbjct: 3 RRRWQEDQENHERWLVSYADFITLLFAFFVVMYAVSSVNEGKYRVLSESLTAI------- 55 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 P I++ ++ +S Q L + + + Sbjct: 56 --------FPQASRRIEPIEVGGPGVVSGSSPIEIEALPAIPSSAQTLGISFPSAATQEH 107 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 S L+ + +++ Sbjct: 108 SAMTS-----------------------------------------------LKAITEEV 120 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 TL L+ +++ V + + + I D +F S+ E + VL+K+ ++L Sbjct: 121 RITLQPLIDEDL---VRLRQGQEWLEVEIND---RVLFTSGSAKLEAEAVPVLKKLAKIL 174 Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + G TD P NW LS RA S + + GVS R++ I G+ + Sbjct: 175 RRFPNPIQVEGFTDNVPISTAVFPSNWELSSARAASVVHLFDRFGVSPARMAAI-GYGQY 233 Query: 319 RLKIASDP--MNSANRRIDILVEDR 341 R + NRR+ +++ R Sbjct: 234 RPVADNSTPEGRRRNRRVALVILGR 258 >gi|116624960|ref|YP_827116.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116228122|gb|ABJ86831.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 276 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 2/153 (1%) Query: 189 KKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K+ + L +KI L + ++ V T G+ I +++ F+ +P Sbjct: 96 KEDMSKLREKIEQALKTVPNFRDLKDHVEMTITSDGLRIELLETEAGMFFESGRPLPTST 155 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L+++ E L + I GHTD+ PF NW LS DRA +A +++ + V Sbjct: 156 GSELLKRLAEELGKMPNHLLIEGHTDSKPFSGDGTYTNWELSSDRANAARRLMESNAVRH 215 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 ++++++ GF +L+ DP +++NRR+ ++V+ Sbjct: 216 EQVAQVRGFGDRQLRHPEDPEHASNRRVSVIVQ 248 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 13/194 (6%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---P 71 I + KK + ++ G+WK+ YADF+T +MA F+V+W+++A D+ K+AI +FN Sbjct: 18 IFVIKKKKVMHGGHHGGAWKVAYADFVTAMMALFIVLWLMSA-DEKVKEAISAFFNNPTG 76 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT--------KNSVDLKIGSTNQKKQ 123 G + T S G + P+ +K+ I++ + K+ V++ I S + + Sbjct: 77 PGTQIGTDSAGTGNAIEVPKED-MSKLREKIEQALKTVPNFRDLKDHVEMTITSDGLRIE 135 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 E +F+ S + L + + + L + + + Sbjct: 136 LLETEAGMFFESGRPLPTSTGSELLKRLAEELGKMPNHLLIEGHTDSKPFSGDGTYTNWE 195 Query: 184 LAMKRKKRLQDLAK 197 L+ R + L + Sbjct: 196 LSSDRANAARRLME 209 >gi|220934517|ref|YP_002513416.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995827|gb|ACL72429.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 305 Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 118/327 (36%), Gaps = 60/327 (18%) Query: 17 IKKKVAIDDTPN-NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + ++ + N +W I Y D +T+L+AFF+VM+ I++ ++ + + + Sbjct: 1 MSRRSRKHHEEHVNHEAWAIPYGDLITLLLAFFVVMYAISSVNEGKYRVLSD-------S 53 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 L+ A + P + + +++ T++ L +G+ + Sbjct: 54 LVAAFRAPPKSTEPIQIGEVGRPAPEMEQQQTRSLAPLDLGAAPAQPGV----------- 102 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 I++ + L + + + L Sbjct: 103 -------------------------------IDRGMDDLLRDAELDADELQAAAEGMSRL 131 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A +I + L+ ++ + R I + I + +F S+ E + VLQ++ Sbjct: 132 ADEIERAMLPLMDADL---IRMRRDRFWIEVEI---NTSLLFASGSAQLSSEAVPVLQRL 185 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L I + G TD P NW LS RA S + ++ + R++ I G Sbjct: 186 ATILRDFPARIQVEGFTDTVPINTPIFPSNWELSAARAASVVNLFSRNQLDPTRMAAI-G 244 Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339 + +R +D NRR+ I+V Sbjct: 245 YGEYRPIADNDTAEGRRQNRRVSIVVL 271 >gi|253575920|ref|ZP_04853254.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844714|gb|EES72728.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 293 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 114/313 (36%), Gaps = 62/313 (19%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD +T+L+ FF++M+ ++ D + + + + I + + Sbjct: 36 WMITYADLITLLLIFFVMMYAMSRLDVEKYEVVTSSL----QQTFKGGDSILELGS---- 87 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 G T +Y S S+Q E Sbjct: 88 -----------------------GITGTADRYSHKNPPASADSGSKQGE----------- 113 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G+ D PL++ ++ K+++ L +L K I S + +++ Sbjct: 114 -GQGTTGQADSSGQA---------PLTERELAFRKQEEELANLMKLIESYIK---DNSLE 160 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + GI I++ D +FD + + L K+ + VISI GHT Sbjct: 161 DQIHVADLPQGISITLSD---RFLFDTGKADLKSGSAKTLAKLASLFRQLDTVISIEGHT 217 Query: 273 DASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 D P + + +DNW LS RA S + + + + + +G+A R +D Sbjct: 218 DNLPIVYASEFKDNWELSGARALSVLRFFVDKEKLDPQQFQYAGYADTRPAADNDTPEGR 277 Query: 329 SANRRIDILVEDR 341 NRR++I V + Sbjct: 278 QKNRRVEITVLRQ 290 >gi|192361715|ref|YP_001982600.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107] gi|190687880|gb|ACE85558.1| hypothetical protein CJA_2135 [Cellvibrio japonicus Ueda107] Length = 294 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 126/326 (38%), Gaps = 62/326 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + +D N W + YADF+T+L AFF+VM+ I+ + + + Q F + A Sbjct: 3 RRRREDIHVNHERWLVSYADFITLLFAFFVVMYSISQVSESKYRVLSQTF-------VQA 55 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 K D Q+ E ++Q +T ++ + + Q + + + Q Sbjct: 56 FKPTTDIQSNQEPAAQ----------LTPSNDVITPVDLGKTAVEQVTNDEQVPIISDQA 105 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + L + +K L ++ + Sbjct: 106 PKDTTPQLEKP-----------------------------------VKTSDELAQISDLV 130 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + S L+ + +++ + + I + D +F ++ P + +V+ +I +L Sbjct: 131 TEKFSQLIDEQLIQ---VSSNELWLQIELKDS---ILFASGNADPSAQAMVIFDEISRIL 184 Query: 260 AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + I + G TD P + NW LS RA + ++L G++ +R++ + G+ Sbjct: 185 KNYSNPIQVEGFTDNVPINSARYPTNWELSSARASAIVKILASKGIAPERLAAV-GYGEF 243 Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342 + ++ + NRR+ I+V R+ Sbjct: 244 QPVASNATPEGRAQNRRVAIMVAKRK 269 >gi|254492051|ref|ZP_05105228.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224462748|gb|EEF79020.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 297 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 107/323 (33%), Gaps = 64/323 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + L ++ +AD M++LM FF+++ D K + + Sbjct: 5 QQRTKRDAEGLPAYMATFADLMSLLMCFFVLLLSFAEMDALKYKMVVKSL---------- 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + + N + Q+ + + Sbjct: 55 -----------------ENAFGVQREVAANEIPKGTSIIAQEFSPGEPKPTPLKVVRQDT 97 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + L + K LA ++ +++ + +K Sbjct: 98 MDDSREQLKVTMDAEK----------------------------LAEQQAQQVAEETQKF 129 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L + + + ++ E+ + I+I I R F + + I +L+KI VL Sbjct: 130 KEALEKEIEEGL---IVVESQYSRIVIRI---REKGSFMSGDARLNNDFIPILKKIHNVL 183 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I++ GHTD P + R NW LS RA S L+ G + G+A Sbjct: 184 LKTDGRIAVAGHTDDVPINTSRYRSNWELSTSRATSVVHELLAPGDMPAERFVLEGYADT 243 Query: 319 RLKIASD--PMNSANRRIDILVE 339 + +D + NRR++I+V Sbjct: 244 KPLEPNDSPTNRARNRRVEIIVL 266 >gi|269796387|ref|YP_003315842.1| flagellar motor protein [Sanguibacter keddieii DSM 10542] gi|269098572|gb|ACZ23008.1| flagellar motor protein [Sanguibacter keddieii DSM 10542] Length = 295 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 119/326 (36%), Gaps = 69/326 (21%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT----KKAIEQYFNPFGKNLMTA 79 ++ + W + YAD MTVL+A F+V++ I+ D+ ++++ FN ++++ Sbjct: 15 EEEHEDSERWLVSYADMMTVLVALFIVLYAISQVDEVKYDQLRQSLAAGFNAPQVSILSD 74 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G+ Sbjct: 75 GAGVL---------------------------------------------------TDNP 83 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +E ++ + D S D S + ++ ++ + +LA+KI Sbjct: 84 TEAVVPAVDKIIPSTVDESTSGDGGDSTGAGDAASPADIAAARV----EYQSFAELAEKI 139 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + +V+ F G++I +I F S++ P + V+ + + Sbjct: 140 DTALAAGGMEGVVQ---FRIDERGLVIGMITDE--VFFASESAVLTPTSQAVVDTMTPFM 194 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHH 318 ISI GH D+ P NW LS DRA +++ G+ RIS + G+ Sbjct: 195 LPLPNEISIEGHADSVPTAR-YASNWELSSDRATQVLRRMVEADGMPPTRISAV-GYGDS 252 Query: 319 RLKIASDPMNS--ANRRIDILVEDRQ 342 R ++ ANRR+D++V Q Sbjct: 253 RPLQPNETAEGLTANRRVDLVVLSDQ 278 >gi|288942612|ref|YP_003444852.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288897984|gb|ADC63820.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 309 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 119/329 (36%), Gaps = 54/329 (16%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N +W I Y D +T+LMAFF+VM+ ++ D + + Sbjct: 3 RRKRHEEHVNHEAWAIPYGDLVTLLMAFFVVMYAVSVVDAGKYSVLSESL---------- 52 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + + I + D + S +R + ++ S Sbjct: 53 ------IEAFGTSAPIDPIQIG----------DPILESNPVSDDVRRSLAPVEVIAGSPA 96 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E + L S D+ + + + +E L +++++ ++ Sbjct: 97 IETTEPDLEPFSPT--DVALAALIGSASEEERGRILG--------------EIREMSTEL 140 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ + + I ++I + +F S+ P VL ++ +L Sbjct: 141 EEAMGSLIE---AGNIEIKRQPYWIEVAI---NSNLLFSSGSATLEPAARPVLARVARLL 194 Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + GHTD P N NW LS RA + + ++G+ +R+ I G+ Sbjct: 195 GRRDVRIHVEGHTDNLPINNTIYPSNWELSSGRAATVVNLFAQNGIDPERMVAI-GYGQF 253 Query: 319 RL--KIASDPMNSANRRIDILVED--RQG 343 + A++ + NRR+ ++V RQ Sbjct: 254 QPTDSNATEAGRARNRRVAVIVLPDVRQA 282 >gi|149191181|ref|ZP_01869439.1| chemotaxis LafU protein [Vibrio shilonii AK1] gi|148835019|gb|EDL51998.1| chemotaxis LafU protein [Vibrio shilonii AK1] Length = 322 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ L+ LA+++ LSG+ A + V T G+ + I D PMF + + Sbjct: 109 EFNSQQELEVLAQRVKQELSGIDA---LGSVSVFVTPQGVKLVIADSDKGPMFFRGGAKV 165 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P +L + +L + I GHTDAS ++ NW LS +RA SA L K G+ Sbjct: 166 TPFYQDLLLNLAGLLEKIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLDKGGL 225 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 E I +++G + ++ + NRRI++ + Sbjct: 226 QERHIFQVTGMSDTAPIDFNNAKSGINRRIELYILT 261 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 3/186 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E II KK + G WK+ AD M LM FLV+WI+ D D +K + YF Sbjct: 2 EQPNVIINKKGRRKRGELQHGG-WKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLE 128 +M + + D + + N + G N +++ + L Sbjct: 61 AYGNDPIMHLGTNESGGNSINPLPLPHVATSHYDAELHRINDTSVLEGEFNSQQELEVLA 120 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + S+ + K + +D + P + Sbjct: 121 QRVKQELSGIDA-LGSVSVFVTPQGVKLVIADSDKGPMFFRGGAKVTPFYQDLLLNLAGL 179 Query: 189 KKRLQD 194 +++++ Sbjct: 180 LEKIEN 185 >gi|304321119|ref|YP_003854762.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503] gi|303300021|gb|ADM09620.1| chemotaxis MotB protein [Parvularcula bermudensis HTCC2503] Length = 254 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 1/211 (0%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + +Q + + D + L + + + + Sbjct: 45 LLNATTEEQRKGIADYFAPTLPVSPVSGGGKDALNGDSVLTEDTLSRSALYPADSTPKSR 104 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + + + D+ + V T GI++ +ID +F SS P PE V Sbjct: 105 EAKAIESSVKEMAKASGLDDADERVRVTVTDEGIVVQLIDAEGKSLFPVGSSTPSPELRV 164 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +++ +A + I I GHTD+ ++ A N+ LS DRA +A ++L+++GV + R++ Sbjct: 165 LVKAAASAVAAGGKKIRIVGHTDSRQYQGYAYSNFELSADRANAARRLLIEAGVDDSRLT 224 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +I+G A I +P + ANRRI I++ DR Sbjct: 225 EITGRADREP-ITDNPADPANRRIAIVLLDR 254 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 84/241 (34%), Gaps = 15/241 (6%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 ++ IIK+K ++ G WK+ YADF+T +MAFFL+MW++NAT ++ +K I YF Sbjct: 2 SDNNPTIIKRKRITVVNGHHGGQWKVAYADFVTAMMAFFLLMWLLNATTEEQRKGIADYF 61 Query: 70 NPFGKNLMTASKGIFDEQN---------------PPERSSQNKIDLSIDEHITKNSVDLK 114 P + G P + + +++ +I+ + + + Sbjct: 62 APTLPVSPVSGGGKDALNGDSVLTEDTLSRSALYPADSTPKSREAKAIESSVKEMAKASG 121 Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 + +++ + + I + + + + + Sbjct: 122 LDDADERVRVTVTDEGIVVQLIDAEGKSLFPVGSSTPSPELRVLVKAAASAVAAGGKKIR 181 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + + + + A + ++ L+ + L E T I D Sbjct: 182 IVGHTDSRQYQGYAYSNFELSADRANAARRLLIEAGVDDSRLTEITGRADREPITDNPAD 241 Query: 235 P 235 P Sbjct: 242 P 242 >gi|226225701|ref|YP_002759807.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27] gi|226088892|dbj|BAH37337.1| chemotaxis MotB protein [Gemmatimonas aurantiaca T-27] Length = 289 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 3/168 (1%) Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQR 232 L I+ ++ + + + I L+ + + V + T+ G+ I +++ Sbjct: 87 ALQRSPMRMIVRSTEQRTFEQMRQAILDKLATSDSLKRLNAQVDVQVTQEGLRIELVESE 146 Query: 233 -NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLD 290 F SS T++ LQ IG+ L+ + + I GHTDA+PF R+ + NW LS D Sbjct: 147 RGDVYFPIGSSQMNSATVLTLQLIGQELSPIAQSLIIEGHTDAAPFGRDASYTNWELSAD 206 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 RA +A +VL +G+ RIS++ G+A + ++ +DP ANRRI +L+ Sbjct: 207 RANAARRVLQAAGIDPKRISEVRGYADTKPRVINDPKAPANRRISVLI 254 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 6/112 (5%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN----LMTASKGIFDE 86 SWK+ YADF+T +MAFF+VMWI+ DD TK+AIE YF NP G ++ G Sbjct: 26 SWKVAYADFVTAMMAFFMVMWILG-MDDKTKQAIEGYFANPVGYKKGYGAGSSPLGTGSA 84 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 N +RS I S ++ + + +RL + + Sbjct: 85 VNALQRSPMRMIVRSTEQRTFEQMRQAILDKLATSDSLKRLNAQVDVQVTQE 136 >gi|89093474|ref|ZP_01166422.1| flagellar motor protein [Oceanospirillum sp. MED92] gi|89082164|gb|EAR61388.1| flagellar motor protein [Oceanospirillum sp. MED92] Length = 313 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 102/323 (31%), Gaps = 51/323 (15%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P L +W + D M++LM FF+++ + D K + Sbjct: 10 CPPCPPGLPAWLATFGDLMSLLMCFFVLLLSFSEMDVLKFKQLAGSMR------------ 57 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + I + Q+ R E + Sbjct: 58 ---------------EAFGVQNQIKVEDIPKGTSIIAQEFSPGRPEPTPLNEVRQMTVNN 102 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 N+L S++G + + ++ + A + + D + ++ + Sbjct: 103 DMNTLDIRSKEGDSDSPDQEAGEQQELQKEQEQEAKEEAVEFAAALAEEIGDGSVEVETD 162 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 ++ KG FD S+ E+I VL KI +VL Sbjct: 163 GKKIIIRIKEKGS---------------------FDSGSAELKFESIPVLAKIRDVLLDV 201 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +SI GH+D P+ NW LS+ RA + L + K+ G A + Sbjct: 202 KGNVSIEGHSDNIPYAGRRFESNWDLSVARALAVAHELFGDPRIDQSRFKVLGMADTKPL 261 Query: 322 IASDP--MNSANRRIDILVEDRQ 342 + +D NRR++I+V + Sbjct: 262 VPNDTRANRVKNRRVEIIVTKGK 284 >gi|289523562|ref|ZP_06440416.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503254|gb|EFD24418.1| flagellar motor protein MotB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 239 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 13/187 (6%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L + L +E L ++ K++ ++ ++ L ++N++ V Sbjct: 59 LPGGVTTIPGEETMQGAQLTGPGQEMTLNAEQVKKVHEMMVQL------LESENLMNEVT 112 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 GI+ISIID +F S +P ++ KI +++ IS+ GHTD P Sbjct: 113 VRIEERGIVISIID---GLLFQSGSVELIPPARRLIYKIAQIINDLPNQISVEGHTDNVP 169 Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333 R RDNW LS RA L+++G+ R+ + G+ R + +D NRR Sbjct: 170 LNRGPYRDNWGLSAMRAAVVGSYLVEAGIDPKRL-RTVGYGQSRPLVPNDTEEHRRINRR 228 Query: 334 IDILVED 340 +DI++ + Sbjct: 229 VDIVILN 235 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 5/95 (5%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + D P G+W Y D +T+L+ FF+ ++ + D + + F L Sbjct: 3 RKRKKDLPQLRGNWLTTYGDMVTLLLTFFVFLYSFSTIDVQKFQKMIYSFQDAIGVLPGG 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114 I P E + Q + +T N+ +K Sbjct: 63 VTTI-----PGEETMQGAQLTGPGQEMTLNAEQVK 92 >gi|189426486|ref|YP_001953663.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] gi|189422745|gb|ACD97143.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] Length = 280 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 116/327 (35%), Gaps = 67/327 (20%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + N W + Y DF+T+L A F+ M+ + TD + + Q AS Sbjct: 4 KREPEKHANHERWLVSYGDFLTLLFAVFVAMYAMGQTDKKKAEELTQSLRESFGYSTQAS 63 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G ++ + I E I T++ + N+ + S+Q Sbjct: 64 AG---QKGVLQSHDIKPIPAIKPEMAV-------IPITDRMPPAGPRQGNVGGGAGSRQ- 112 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 M +K +++A I Sbjct: 113 ---------------------------------------------MAGEKEFREMASAIE 127 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + L V V T+ G++IS+ + FD S+ E+I L+ I + L+ Sbjct: 128 AYL---VKQGFQNKVALSITQRGLVISL---KEAGFFDSGSAKLKSESIQTLRGIADTLS 181 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318 + GHTD+ P R+ R NW LS RA + L+ +G S + +S + G+ Sbjct: 182 RYANRFRVEGHTDSMPIRSTEFRSNWELSTARATNVIHFLIDSAGFSPESLSAV-GYGEF 240 Query: 319 RLKIASDPM--NSANRRIDILVEDRQG 343 + + + + NRR+DI++ + Sbjct: 241 QPVVDNSTAEQRAKNRRVDIVLLADEA 267 >gi|148974248|ref|ZP_01811781.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3] gi|145965945|gb|EDK31193.1| chemotaxis LafU protein [Vibrionales bacterium SWAT-3] Length = 324 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ L+ LA++I+ LSG+ A + V T G + I D PMF + + Sbjct: 109 EFNSQQELELLAQRITQELSGIDA---LGSVSVFVTPQGAKLVIADSDKGPMFFRGGAKV 165 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P +L + +L + + I GHTDAS ++ NW LS +RA SA L K G+ Sbjct: 166 TPFYQDLLLNLAGLLENIENKMIITGHTDASRYKGSRMTNWELSSNRANSARYYLNKGGL 225 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 E I +++G + + + NRRI++ + Sbjct: 226 QERHIFQVTGMSDTAPVDYENTKSGINRRIELYILT 261 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 3/186 (1%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + Q II KK + + G WK+ AD M LM FLV+WI+ D D +K + YF Sbjct: 2 QQPQIIIQKKGRRKRNELQHGG-WKVAMADLMISLMCLFLVLWILQVVDVDDQKKLLNYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLE 128 +M + + + + N + G N +++ + L Sbjct: 61 AYGNDPIMHLGTSESGGNSINPLPLPHVATSHYGADLHRINDTSVLQGEFNSQQELELLA 120 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 I + + S+ + K + +D + P + Sbjct: 121 QRITQELSGIDA-LGSVSVFVTPQGAKLVIADSDKGPMFFRGGAKVTPFYQDLLLNLAGL 179 Query: 189 KKRLQD 194 + +++ Sbjct: 180 LENIEN 185 >gi|296534172|ref|ZP_06896663.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265499|gb|EFH11633.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 157 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 2/146 (1%) Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 A++I + + ++ + +L E TR G+ I ++D P+F + P +L + Sbjct: 1 AEEIRAAIQSDPGLSDLARQLLIEQTREGLRIQLVDADGQPVFATGQAAPNQRGRALLLR 60 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + VLA + I GHTDA+PFR R NW LS +RA +A +VL+++G++E+R+ ++ Sbjct: 61 VATVLARLPYGLDIAGHTDAAPFRGGGDRSNWELSAERAGAARRVLIEAGIAEERLRAVA 120 Query: 314 GFAHHRLKIASDPMNSANRRIDILVE 339 G A L P+++ANRR+ ILV Sbjct: 121 GRADRDLLSPDRPLDAANRRVSILVL 146 >gi|333010781|gb|EGK30207.1| lateral flagellar motor protein B [Shigella flexneri K-272] gi|333021279|gb|EGK40532.1| lateral flagellar motor protein B [Shigella flexneri K-227] Length = 256 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + E K +L K L +LA I++ + + Sbjct: 40 PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEA---NLEM 96 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E G+ + I D +N MF++ S+ +P +L ++ V I I GHTDA Sbjct: 97 EIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAN 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +N +NW LS DRA SA +VL ++G+ ED++ ++S A L A +P ++ NRRI+I+ Sbjct: 157 KNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIM 216 Query: 338 VEDRQG 343 V + Sbjct: 217 VLTKSA 222 >gi|260892160|ref|YP_003238257.1| OmpA/MotB domain protein [Ammonifex degensii KC4] gi|260864301|gb|ACX51407.1| OmpA/MotB domain protein [Ammonifex degensii KC4] Length = 268 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 111/312 (35%), Gaps = 88/312 (28%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD +T+L+ FF+V++ + D + I + + G+ E P Sbjct: 16 WLITYADLITLLLIFFIVLYTFSKIDAEKFAGIAEAL----ARALGGGAGMILEGQGP-- 69 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 +S + + E +++ S Sbjct: 70 ---------------------------------------AVVSGAPKFEPGEDAKFALSG 90 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G++ + ++ I K ++EK L K R+++ Sbjct: 91 GGEENLQLEKIKAEIEK--------YAREKGLQAKITARIEE------------------ 124 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 G+++S++D +F S+ P+ V++++G++L + I GHT Sbjct: 125 ---------RGLVVSVLDT---VLFPIGSAELTPQAKEVVREVGKILLKMPNCVRIEGHT 172 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--N 328 P NW LS+ RA S Q L+ + R+ G+A +R + +D Sbjct: 173 CDLPIHTPRYPSNWELSVARATSVVQELIHTVNFPPQRLCA-CGYAEYRPLVPNDSEEHR 231 Query: 329 SANRRIDILVED 340 NRR+D +V Sbjct: 232 QMNRRVDFVVLR 243 >gi|297544067|ref|YP_003676369.1| OmpA/MotB domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841842|gb|ADH60358.1| OmpA/MotB domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 239 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 9/148 (6%) Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L G V +N ++G++ G++IS+ D +FD S+ PE VL KIG Sbjct: 84 EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDT---LLFDLGSADVHPEEKDVLIKIG 140 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + G TD P N NW LS+ RA + ++L+ ++GV +IS + G Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199 Query: 315 FAHHRLKIASDPM--NSANRRIDILVED 340 + +R + +D NRR+DI++ + Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVIMN 227 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLM 77 ++ D++ N G W + Y+D M++L+ FF+V++ I+ + + FG + Sbjct: 2 RRWEEDESKLNTGRWVLTYSDMMSLLLVFFIVLYSISTLNAAKFAQLSVSLSRAFGGSDY 61 Query: 78 TASKGIFD---EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + + D + N +++S +I+ ++ + +N++ + S ++ + Sbjct: 62 VIGQYMGDSFVQGNSGDKNSLGEIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDTLLF 121 Query: 135 SNSQQSEHCKN 145 H + Sbjct: 122 DLGSADVHPEE 132 >gi|289577780|ref|YP_003476407.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9] gi|289527493|gb|ADD01845.1| OmpA/MotB domain protein [Thermoanaerobacter italicus Ab9] Length = 239 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 9/148 (6%) Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L G V +N ++G++ G++IS+ D +FD S+ PE VL KIG Sbjct: 84 EIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDT---ILFDLGSADVHPEEKDVLIKIG 140 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISG 314 +L I + G TD P N NW LS+ RA + ++L+ ++GV +IS + G Sbjct: 141 NMLKTLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVHEAGVDPKKISAV-G 199 Query: 315 FAHHRLKIASDPM--NSANRRIDILVED 340 + +R + +D NRR+DI++ + Sbjct: 200 YGEYRPVVPNDSEEHRRLNRRVDIVIMN 227 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLM 77 ++ D++ N G W + Y+D M++L+ FF+V++ I+ + + FG + Sbjct: 2 RRWEEDESKLNTGRWVLTYSDMMSLLLVFFIVLYSISTLNAAKFAQLSISLSRAFGGSDY 61 Query: 78 TASKGIFD---EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + + D + N +++S +I+ ++ + +N++ + S ++ + Sbjct: 62 VIGQYMGDSFVQGNSGDKNSLGEIEKQLEGFVKENNLQGMVTSYIDERGLVISLQDTILF 121 Query: 135 SNSQQSEHCKN 145 H + Sbjct: 122 DLGSADVHPEE 132 >gi|229543005|ref|ZP_04432065.1| OmpA/MotB domain protein [Bacillus coagulans 36D1] gi|229327425|gb|EEN93100.1| OmpA/MotB domain protein [Bacillus coagulans 36D1] Length = 274 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 125/328 (38%), Gaps = 67/328 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KK+ + N +W + Y+DF+T+L+A F+V++ +++ D + F+ + Sbjct: 3 KKRKKRQEEEGNSEAWLLPYSDFLTLLLALFIVLFAMSSIDAQKFQK----FSKVLNGVF 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 FD TK + +++ +K ++ +N+ +S Sbjct: 59 VGGTSFFDY--------------------TKQTSGDDNSTSDTEKFLEQKKNDAQKNGDS 98 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + NS T S D +L++ + Sbjct: 99 TTNGSKSNSTTDASNGQGD---------------------------------AQLKETQQ 125 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +I++ ++ + + T G+LI+I D +FD + E I + + Sbjct: 126 RINTYIAH---NKLEGKFETSLTGEGLLITIRDN---VLFDSGKAEVRKEDIKTAKALSN 179 Query: 258 VL-AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I + GHTD P N + NW LS+ RA + ++++++ + G+ Sbjct: 180 LLVMDPPRSIIVSGHTDNVPIHNSVFQSNWDLSVMRATNFLKIILENKNLNPKYFSAKGY 239 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341 + ++D + NRR+++L+ + Sbjct: 240 GEYHPIASNDTQGGRAKNRRVEVLILPK 267 >gi|218290401|ref|ZP_03494531.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239529|gb|EED06723.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 271 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 120/328 (36%), Gaps = 73/328 (22%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ N+ W + Y+D +T+L+ FF+VM+ ++ D + + Sbjct: 1 MERRKKPKHKQNH-ERWLVTYSDLITLLLVFFVVMFAMSTIDKTRFATLAESLYQALHP- 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + I N + + + Q+ +N+ Sbjct: 59 --------------------------GQQIPLNMGTTALLESGDQNNGQQFPDNL----- 87 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q + N+ T++ + +DL + K+L L Sbjct: 88 -QNPNNPSNATTQNQQSNEDLTDA-----------------------------KQLDLLY 117 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++I ++ + ++ V G+ I++ D +F+ ++ LP+ +++ + Sbjct: 118 REIQQYIA---SHHLSGEVQVIDEARGVQITMRD---VALFNTGQAVLLPKAKAIIEGLI 171 Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + I + G+TD P NW LS RA S + L G++ R++ + G+ Sbjct: 172 PFFKQISNDIVVEGYTDTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGM-GY 230 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341 + ++ ANRR++I++ + Sbjct: 231 GQYHPVASNATPAGRQANRRVNIVILRK 258 >gi|256376462|ref|YP_003100122.1| OmpA/MotB domain protein [Actinosynnema mirum DSM 43827] gi|255920765|gb|ACU36276.1| OmpA/MotB domain protein [Actinosynnema mirum DSM 43827] Length = 295 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 117/330 (35%), Gaps = 61/330 (18%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 +K ++ + W + YAD +T+LM F+VM+ +++ D + +++ + Sbjct: 7 RKNKHEEQHVHDERWMVTYADMITLLMVLFIVMFAMSSVDSQKFQELKKSL----AGAFS 62 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 S I S+ I+ + VDLK Sbjct: 63 GSDHITVFGAGGAGSANGGIN--------PDPVDLK------------------------ 90 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 G + + + + +K A + L++L ++ Sbjct: 91 -----------SEASGSGSTQDLSSKAAQEAVQQADRQKAAKNLKAAEAEVQHLKELGEQ 139 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ L + F G+ + + +F + LP+ ++ + V Sbjct: 140 MAKQLQ---DQGLGGTAQFRVDDRGL--VVTVVTTSVVFAGDRAELLPDGQRIVDALAPV 194 Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFA 316 L + + GHT+ P + +W LS RA S + L + G++ DR++ + G+A Sbjct: 195 LKSVGNRVEVDGHTNQLPVATVNYPSSWELSTARASSVVRYLIERDGLASDRLTAV-GYA 253 Query: 317 HHRLKIASDPMNSA----NRRIDILVEDRQ 342 R DP + NRR++++V Q Sbjct: 254 DTRPLY--DPADPRSVTGNRRVEVVVLSDQ 281 >gi|258510423|ref|YP_003183857.1| OmpA/MotB domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477149|gb|ACV57468.1| OmpA/MotB domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 271 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 120/328 (36%), Gaps = 73/328 (22%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ N+ W + Y+D +T+L+ FF+VM+ ++ D + + Sbjct: 1 MERRKKPKHKQNH-ERWLVTYSDLITLLLVFFVVMFAMSTIDKTRFATLAESLYQALHP- 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + I N + + + Q+ +N+ Sbjct: 59 --------------------------GQQIPLNMGTTALLESGDQNNGQQFPDNL----- 87 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q + N+ T++ + +DL + K+L L Sbjct: 88 -QNPNNPSNATTQNQQSNEDLTDA-----------------------------KQLDLLY 117 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++I ++ + ++ V G+ I++ D +F+ ++ LP+ +++ + Sbjct: 118 REIQQYIA---SHHLSGEVQVIDEARGVQITMRD---VALFNTGQAVLLPKAKAIIEGLI 171 Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + I + G+TD P NW LS RA S + L G++ R++ + G+ Sbjct: 172 PFFKQISNDIVVEGYTDTQPINTPIYPSNWELSAARAMSVVRFLADHGINPTRLAGM-GY 230 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341 + ++ ANRR++I++ + Sbjct: 231 GQYHPVASNATPAGRQANRRVNIVILRK 258 >gi|326389648|ref|ZP_08211214.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325994363|gb|EGD52789.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 237 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L+G + +N ++G++ G++IS+ D +FD S+ PE VL KIG Sbjct: 83 EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDS---LLFDLGSADVHPEEKDVLIKIG 139 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 +L I + G TD P N NW LS+ RA + ++L+ G+ RIS + G Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198 Query: 315 FAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + +R + +D NRR+DI++ + + Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVIMNTE 228 Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPFGKN 75 K D++ N W + Y+D +T+L+ FF+VM+ I+ + I F Sbjct: 2 KRLEDESKPNHERWLLTYSDMITLLLIFFIVMYTISTINATKFAQIASSLSKTFTGTDYV 61 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK-IGSTNQKKQYQRLENNIFYL 134 + S F + N +++S +I+ ++ I +N++ +++ +++++ + Sbjct: 62 IGQYSGSSFVQGNSGDKNSLGEIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDSLLFD 121 Query: 135 SNSQQ 139 S Sbjct: 122 LGSAD 126 >gi|90415360|ref|ZP_01223294.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] gi|90332683|gb|EAS47853.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] Length = 408 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 64/359 (17%), Positives = 130/359 (36%), Gaps = 54/359 (15%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKNLMTASK 81 +W +AD T+LMAFF+++ + K + N ++ Sbjct: 54 GAPAWMATFADMATLLMAFFVLILSFAHMNVPKYKEVSGSMNQKFGVQKIVPVVEQPTAE 113 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 + +Q + +D+ ++ + + KK ++ L S E Sbjct: 114 NVIAKQYKTAKVDPTLLDVIQEQTTAERQPEDVELKDKLKKNKSSTNSDAEVLKKSLAKE 173 Query: 142 HCKN----------------SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + S + ++G+D + + + E Y ++ ++ + Sbjct: 174 IAEGKVKVTIKDKKLVVEVVSEAKSGKQGEDRKSKSGAKLLQSDLEVYAKVASAQAQVAS 233 Query: 186 MKR---------------------KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + ++ + D +KI + LS +A+ + E R G Sbjct: 234 QVQVIDASPESLDGDLSGRGSQAGEQAIADQYEKIRARLSNEIAEGLA-----EVDRDGD 288 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIAR 282 I ++ F + P +L K+GE + + +I+I GHTD P F R Sbjct: 289 KI-VVRLAERGSFRSGYADLQPSFKPLLDKVGESITDGSSLITIEGHTDNIPMAFSERFR 347 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 NW LS R+ + L+ S +D ++G A + + +D S NRRI+++++ Sbjct: 348 SNWDLSAARSAAVADYLLNSSEIDDGRVSVTGLADTKPLVPNDSPEGRSKNRRIEVIID 406 >gi|298507057|gb|ADI85780.1| chemotaxis MotB protein [Geobacter sulfurreducens KN400] Length = 266 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 112/327 (34%), Gaps = 75/327 (22%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + N W + YADF+T+L A F+ ++ + +D + + + Q Sbjct: 3 KPKKHEKEPNHERWLVSYADFITLLFAVFVTLYAMGQSDKEKIEQVMQSMR--------E 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S G + P + + D+ I I + + Sbjct: 55 SFGFTATGSAPRPAVLDSSDMRIMPSIAPDLTN--------------------------- 87 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 KG+ K+ D + I E K Q + I Sbjct: 88 -------------KGRGQGKNADSKGRIRATE------------------KDFQAIKSSI 116 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L + V R G+++S+ + FD S+I +L K+ E L Sbjct: 117 EAYL---IKQGAQDKVNVGINRRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESL 170 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + + + GHTD P + NW LS RA + L +S + +GF + Sbjct: 171 SAYSNPVRVEGHTDTMPISSAQFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEY 230 Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343 R ++ S NRR+DI++ +G Sbjct: 231 RPIADNNTAEGRSKNRRVDIVLLSGEG 257 >gi|39998119|ref|NP_954070.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA] gi|39985064|gb|AAR36420.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA] Length = 266 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 113/327 (34%), Gaps = 75/327 (22%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + N W + YADF+T+L A F+ ++ + +D + + + Q Sbjct: 3 KPKKHEKEPNHERWLVSYADFITLLFAVFVTLYAMGQSDKEKIEQVMQSMR--------E 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S G + P + + D+ I I + + Sbjct: 55 SFGFTATGSAPRPAVLDSSDMRIMPSIAPDLTN--------------------------- 87 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 KG+ K+ D + I E K Q + I Sbjct: 88 -------------KGRGQGKNADSKGRIRATE------------------KDFQAIKSSI 116 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L + V R G+++S+ + FD S+I +L K+ E L Sbjct: 117 EAYL---IKQGAQDKVNVGINRRGLVVSL---KEAGFFDSGSAIVKESAYPLLAKVAESL 170 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + + + GHTD P ++ NW LS RA + L +S + +GF + Sbjct: 171 SAYSNPVRVEGHTDTMPISSVQFPSNWELSTARATNIVHFLTRSYDFDPGAISAAGFGEY 230 Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343 R ++ S NRR+DI++ +G Sbjct: 231 RPIADNNTAEGRSKNRRVDIVLLSGEG 257 >gi|295704127|ref|YP_003597202.1| chemotaxis protein MotB [Bacillus megaterium DSM 319] gi|294801786|gb|ADF38852.1| chemotaxis protein MotB [Bacillus megaterium DSM 319] Length = 277 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 62/328 (18%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + SW + Y+D +T+L+A F+V++ +++ D K + + FN Sbjct: 3 RRRKRKHEEDHVDESWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAF 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+ + Q+ Sbjct: 59 VGGTGVMEFQSL------------------------------------------------ 70 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q+SE + K + + + + L KE+ + ++ LQ + Sbjct: 71 QESEEAVQPSNTPAAKSTKKTNEVETAPNQSPASSQSLTSEQKEQTIREADQEELQQIQS 130 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI++ + N+ + T G+LISI D +FD + E + I E Sbjct: 131 KINAYIQ---KKNLTNQLQTSLTEEGLLISIRDN---VLFDSGRAQVRSEDTKIANDISE 184 Query: 258 VLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I I GHTD P RN NW LS+ RA + +V++K+ + GF Sbjct: 185 LLVIDPPRNIIISGHTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLSPSMFSAKGF 244 Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341 + +++ + NRR++IL+ R Sbjct: 245 GEFKPVTSNNTAEGQAKNRRVEILITPR 272 >gi|294498805|ref|YP_003562505.1| chemotaxis protein MotB [Bacillus megaterium QM B1551] gi|294348742|gb|ADE69071.1| chemotaxis protein MotB [Bacillus megaterium QM B1551] Length = 277 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 123/328 (37%), Gaps = 62/328 (18%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + SW + Y+D +T+L+A F+V++ +++ D K + + FN Sbjct: 3 RRRKRKHEEDHVDESWLLPYSDLLTLLLALFIVLFAMSSVDAQKFKNLSRAFN----EAF 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+ + Q+ Sbjct: 59 VGGTGVMEFQSL------------------------------------------------ 70 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q+SE + K + + + + + L KE+ + ++ LQ + Sbjct: 71 QESEEAVQPSNTPAAKSTEKTNEVETAPNQSPASSQSLTSEQKEQTIREADQEELQQIQS 130 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI++ + N+ + T G+LISI D +FD + E + I E Sbjct: 131 KINAYIK---KKNLTNQLQTSLTEEGLLISIRDN---VLFDSGRAQVRSEDTKIANDISE 184 Query: 258 VLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I I GHTD P RN NW LS+ RA + +V++K+ + GF Sbjct: 185 LLVIDPPRNIIISGHTDNVPIRNAGFESNWELSVMRAVNFMKVILKNDKLNPSMFSAKGF 244 Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341 + +++ + NRR++IL+ R Sbjct: 245 GEFKPVTSNNTAEGQAKNRRVEILITPR 272 >gi|307265590|ref|ZP_07547144.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919388|gb|EFN49608.1| OmpA/MotB domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 237 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L+G + +N ++G++ G++IS+ D +FD S+ PE VL KIG Sbjct: 83 EIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDS---LLFDLGSADVHPEEKDVLIKIG 139 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 +L I + G TD P N NW LS+ RA + ++L+ G+ RIS + G Sbjct: 140 NMLKTLPNHIRVEGFTDDLPIHNSKFDSNWELSVIRATNVVKILVNEVGIEPQRISAV-G 198 Query: 315 FAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + +R + +D NRR+DI++ + + Sbjct: 199 YGEYRPVVPNDSEEHRRLNRRVDIVIMNTE 228 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPFGKN 75 K D++ N W + Y+D +T+L+ FF+VM+ I+ + I F Sbjct: 2 KRLEDESKPNHERWLLTYSDMITLLLIFFIVMYTISTINATKFAQIASSLSKTFTGTDYV 61 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK-IGSTNQKKQYQRLENNIFYL 134 + S F + N +++S +I+ ++ I +N++ +++ +++++ + Sbjct: 62 IGQYSGSSFVQGNSGDKNSLGEIEKQLNGFIKENNLQGMVTSYIDERGLVISMQDSLLFD 121 Query: 135 SNSQQ 139 S Sbjct: 122 LGSAD 126 >gi|206889281|ref|YP_002248656.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741219|gb|ACI20276.1| chemotaxis protein MotB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 213 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 20/188 (10%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ K+ + S+ K P+S E +D K I L L+ D + G+ Sbjct: 43 DVTKAEKMTSSLRKVFKVIDEPVSFE-----------EDRNKAIIEDLRKLLND--ISGI 89 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 ++ GI+I++ D +F S+ PE+ L +I E L ++I GHTD Sbjct: 90 NIKSDARGIVITLPDS---LLFSSGSAELKPESTDALTRIAEKLKELPGKVAIEGHTDNI 146 Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332 P + NW LS RA S L++ G+S DR I+G+ ++ +D + NR Sbjct: 147 PISSSVYKSNWELSAARASSVLHFLLQRGLSPDRFL-IAGYGEYKPVATNDTDEGRAKNR 205 Query: 333 RIDILVED 340 R+++++ Sbjct: 206 RVELIILR 213 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 10/192 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I Y+DF+T+L FF+ ++ +++ D + + K + DE E Sbjct: 18 WLISYSDFLTLLFTFFVALYALSSVDVTKAEKMTSSLRKVFK--------VIDEPVSFEE 69 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 I + + + + I S + ++ +F +++ ++LTR +E Sbjct: 70 DRNKAI-IEDLRKLLNDISGINIKSDARGIVITLPDSLLFSSGSAELKPESTDALTRIAE 128 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NI 211 K K+L +E + S ++ A + L L ++ S L+A Sbjct: 129 KLKELPGKVAIEGHTDNIPISSSVYKSNWELSAARASSVLHFLLQRGLSPDRFLIAGYGE 188 Query: 212 VKGVLFETTRTG 223 K V T G Sbjct: 189 YKPVATNDTDEG 200 >gi|167038133|ref|YP_001665711.1| OmpA/MotB domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039156|ref|YP_001662141.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514] gi|256750878|ref|ZP_05491762.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913254|ref|ZP_07130571.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561] gi|307723732|ref|YP_003903483.1| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X513] gi|320116543|ref|YP_004186702.1| OmpA/MotB domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853396|gb|ABY91805.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X514] gi|166856967|gb|ABY95375.1| OmpA/MotB domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750213|gb|EEU63233.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889939|gb|EFK85084.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X561] gi|307580793|gb|ADN54192.1| OmpA/MotB domain protein [Thermoanaerobacter sp. X513] gi|319929634|gb|ADV80319.1| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 238 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 198 KISSTLSGLVADNIVKGVLFE-TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +I L G + +N ++G + G++IS+ D +FD S+ PE VL KIG Sbjct: 84 EIEKQLKGFIKENNLQGAVTSYIDERGLVISLQDS---LLFDLGSADVRPEEKEVLIKIG 140 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 ++L I + G TD P N NW LS+ RA + ++L+ G+ RIS + G Sbjct: 141 DMLKSLPNHIRVEGFTDDLPIHNNKFDSNWELSVIRATNVVKILVNEVGIEPARISAV-G 199 Query: 315 FAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + +R + ++ NRR+DI++ + + Sbjct: 200 YGEYRPVVPNNSEENRRLNRRVDIVIMNTE 229 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 5/111 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72 +K+ + PN+ W + Y+D M++L+ FF+V++ I+ + I F Sbjct: 1 MKRLEEDESKPNH-DRWVLTYSDMMSLLLVFFIVLYSISTVNATKFAQIASSLSKTFTGT 59 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 L + F + N ++SS +I+ + I +N++ + S ++ Sbjct: 60 DYVLFQYNGSSFMDGNSGDKSSLGEIEKQLKGFIKENNLQGAVTSYIDERG 110 >gi|296134255|ref|YP_003641502.1| OmpA/MotB domain protein [Thermincola sp. JR] gi|296032833|gb|ADG83601.1| OmpA/MotB domain protein [Thermincola potens JR] Length = 296 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 8/169 (4%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 PL + A +KK ++++ K + + N+ V+ G++IS+ + T Sbjct: 71 GPLVIPEQSAGAQKKEMEEMKKAKEQLDAYIKGQNLGGKVVVAYEERGLVISL---KETM 127 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294 F S+ P+ L KIG+VL + + I GHT P R NW LS RA + Sbjct: 128 FFAIGSAAINPQAQETLIKIGQVLKNMPNNLRIEGHTCNLPIRTANFPSNWELSTARATN 187 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 + L+ G R+S +G+ +R + + + + NRR+DI+V Sbjct: 188 VVKFLIDRVGFDPKRLSA-TGYGEYRPLVPNTSEANRAMNRRVDIVVLR 235 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K+ + N W I YAD +T+LM FF++M+ I+ + Q + L Sbjct: 1 MGKRAKEPEKAPNHERWLITYADLITLLMIFFIIMYTISNVNAKKF---AQLSSSLSSAL 57 Query: 77 MTASKGIFDEQNPPE 91 + + G F + P Sbjct: 58 VGQNSGYFIGEAPGP 72 >gi|294084383|ref|YP_003551141.1| flagellar MotB protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663956|gb|ADE39057.1| flagellar MotB protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 384 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 126/368 (34%), Gaps = 54/368 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFG----KNLM 77 P +W +AD T+LMAFF+++ + K I N FG ++ Sbjct: 17 PKCPPVGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLKNAFGVQRTVPIV 76 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 KG + +++ TK++ K +N + + Sbjct: 77 EQPKGTTILSLNFSPNPAPSATNQMNQETTKDTQPDLDIKNKDKDDDGGDLDNAEDIVKA 136 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD--- 194 + + + +S K + T L+ + K + Sbjct: 137 LEDAIARGEIEVESLGEKVIVNFTPTNAPEENMPQLLKETLNAIEQAKDAAGKAEAEVLF 196 Query: 195 --LAKKISSTL-----------------------------SGLVADNIVKGVLFETTRTG 223 L +++ L +A++ +K L + G Sbjct: 197 GGLEQQLEKMLAAAESASASQSQSEAEEAEAQEQQEKQNAQAAIAEDELKVALRQEIGQG 256 Query: 224 ILISIIDQRNTPM--------FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + +++ + + + F S+ ++Q+I EV A + I++ GHTD Sbjct: 257 L-VTVEREEDRVLITVGSGGAFASGSAELTDSAREIMQQIAEVSAGGSSSINVSGHTDNV 315 Query: 276 P--FRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSA 330 P F + RDNW L+ RA S Q L SG V +R+ +S F ++D + Sbjct: 316 PLIFGSQFRDNWDLAAARASSVVQALEDSGQVPGNRMQAVS-FGESMPLESNDTAEGRAL 374 Query: 331 NRRIDILV 338 NRRI+I + Sbjct: 375 NRRIEIEI 382 >gi|94500546|ref|ZP_01307077.1| flagellar motor protein [Oceanobacter sp. RED65] gi|94427336|gb|EAT12315.1| flagellar motor protein [Oceanobacter sp. RED65] Length = 331 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 104/319 (32%), Gaps = 43/319 (13%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 L +W + D M++LM FF+++ D K + Sbjct: 15 GLPAWLATFGDLMSLLMCFFVLLLSFAQMDAQKFKRLAGELR------------------ 56 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 + + I + + E + S+ ++SL Sbjct: 57 ---------MAFGVQTTIRADDPPKGTSVIAKHFSPSIPEPTPINEIRQKTSDVTQSSLE 107 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + E +K A + ++ +LA ++ +S Sbjct: 108 VLCQDAITAQTEAKGNTGKQTREITVPKESESQKKQAEQAEETAFELATELEREIS---- 163 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 V ET + I+I I R F+ + E + VL I EVL IS+ Sbjct: 164 ---KGQVELETQGSKIVIRI---REKGSFNAGGAYVEDEFLPVLDTIREVLVEVPGRISV 217 Query: 269 RGHTDASPF--RNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLK--IA 323 GHTD++P NW LS RA + + L + + E R ++ G R Sbjct: 218 EGHTDSTPLGRGGRYNSNWELSAARAAAVAEYLFIAPEMPESRF-RVVGHGSVRPVAENK 276 Query: 324 SDPMNSANRRIDILVEDRQ 342 + + NRR++I+V + Sbjct: 277 TAEGRAKNRRVEIIVLRSK 295 >gi|309789304|ref|ZP_07683895.1| chemotaxis motB domain protein [Shigella dysenteriae 1617] gi|308922839|gb|EFP68355.1| chemotaxis motB domain protein [Shigella dysenteriae 1617] Length = 137 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAY 293 MF S+ P +L+ I VL IS+ GHTD P+ + NW LS DRA Sbjct: 1 MFKTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRAN 60 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 ++ + LM G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 61 ASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQA 110 >gi|145298724|ref|YP_001141565.1| flagellar motor protein MotB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851496|gb|ABO89817.1| Flagellar motor component MotB [Aeromonas salmonicida subsp. salmonicida A449] Length = 292 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 119/332 (35%), Gaps = 55/332 (16%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K + P N W + YADFMT+L A F+V++ + + Q F Sbjct: 1 MVAKKKKPEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGF------- 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 S G +PP S + I E ++ + Sbjct: 54 -IESLGKIGLISPPAGSPVMQGGTGILEPESRTT-------------------------- 86 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL-QDL 195 S + L +D+ + + S P +KE+ K+ L Q L Sbjct: 87 -PSSPDKETVLEKDAPTAAADPFNETIGASEKPSATEAWPHKTKEQEWVQVTKQTLNQQL 145 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +I S K + E + ++I I +F S+ P+ I ++ KI Sbjct: 146 KAQIES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVHKI 191 Query: 256 GEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKIS 313 +LA+ + + GHTD S + R NW LS+ RA S +L + R+ Sbjct: 192 AGILANIPGKVVVTGHTDNSQAPLELYRSNWELSVLRAASIVHIMLTDPKLDATRVIA-Q 250 Query: 314 GFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 G A + + +D ANRR++I + + Sbjct: 251 GVADAQPRYPNDTAEHRQANRRVEITLSQGKA 282 >gi|152965627|ref|YP_001361411.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216] gi|151360144|gb|ABS03147.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216] Length = 342 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 118/313 (37%), Gaps = 67/313 (21%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN---LMTASKGIFDEQNP 89 W + YAD +TVLMA F+V++ ++ D + + ++ S GI + N Sbjct: 23 WLVAYADMLTVLMALFIVLFALSQIDQLKFAQFKDGLTKGTSSSNQAVSGSAGILEATNG 82 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 ++ + Q + + + + Q+ + L Sbjct: 83 DMPIDITP-------------------NSTGQPLQQSVSTEVRKILQAAQTAQTQEDLKA 123 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 E+ +D +++AK+I + L+ A Sbjct: 124 AQEEVQDY-----------------------------------REIAKQIDAALT---AK 145 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 V + T G+++ ++ + F +S+ + VL I +LA I+++ Sbjct: 146 GDQDQVTYRITSDGLVVGLV--ADNVFFANASAEVEEKGREVLDVIAPILAQLPNDIAVQ 203 Query: 270 GHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DP 326 GHT++ RDNW LS RA + Q +G+ + +S +G+A R + DP Sbjct: 204 GHTNSLSLSATTRYRDNWDLSAARAMTVVQRFTAAGIPGNHLSG-TGYADSRPLYPNEDP 262 Query: 327 MN-SANRRIDILV 338 + NRR+D++V Sbjct: 263 KALTGNRRVDLVV 275 >gi|289548706|ref|YP_003473694.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484] gi|289182323|gb|ADC89567.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484] Length = 243 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 +E L + ++ ++ Q + K+I L + + GI + + Sbjct: 63 QETLPRQILPQPVPPKVRPTEKGQKILKQIMELEKTLKTIGLEGKLKVAYEAIGIRLIL- 121 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS 288 + +FD S+ P+ +L KI E+L + + GHTD P NW LS Sbjct: 122 --QERLLFDSGSADIKPQFYPILDKIAELLNSIPNPVEVEGHTDNIPISTGRFPSNWELS 179 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 RA S + + GVS DR+ SG+A R ++ NRR++I++ + +G Sbjct: 180 TARASSVVRYFIAKGVSPDRLKA-SGYADTRPIASNATPEGREQNRRVEIVIINIKG 235 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 30/94 (31%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 W I YADF+T+L+ F+ ++ + Q F + Sbjct: 3 RRKKCPEEVSERWAIPYADFLTLLLCLFIALFAMAQAGKQAALEYAQAFARAFGMRLVPY 62 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114 + Q P+ + I K ++L+ Sbjct: 63 QETLPRQILPQPVPPKVRPTEKGQKILKQIMELE 96 >gi|310764847|gb|ADP09797.1| chemotaxis protein (motility protein B) [Erwinia sp. Ejp617] Length = 302 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 3/166 (1%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMF 237 +K+ K + L+ + ++ + + N +L T G++I I D + PMF Sbjct: 100 QVDKLDKFKNVESLKKVKTRLEAMIESDPRLSNFKSNLLLTLTDDGLVIQITDSQERPMF 159 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSA 295 S P +LQ + +L +S+ GHTD+ + + NW LS RA +A Sbjct: 160 KTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGYSNWELSTGRANAA 219 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 +VL+ +G+ +D I ++ G N NRRI +L+ + Sbjct: 220 RRVLVNAGLDDDHILRVIGTGSRMGLTDISADNPMNRRISVLILSK 265 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 7/191 (3%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 II ++K ++ G+WKI YADFMT +MAFFLVMW++ ++ D ++ I YF Sbjct: 6 PIIRQRKRKHKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPI 65 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 K M ++ + I + K+ VD N + + Sbjct: 66 KPTMGQGNKTSFSESVIPGGGDDVIRQEG--EVFKHQVDKLDKFKNVESLKKVKTRLEAM 123 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + + + K++L + + TD ++ + P + IL + L Sbjct: 124 IESDPRLSNFKSNLLLTLTDDGLVIQITDSQERPMFKTGSESPESYMKGIL-----QALV 178 Query: 194 DLAKKISSTLS 204 L K++ ++LS Sbjct: 179 PLLKELPNSLS 189 >gi|197120112|ref|YP_002140539.1| chemotaxis protein MotB [Geobacter bemidjiensis Bem] gi|197089472|gb|ACH40743.1| chemotaxis MotB protein [Geobacter bemidjiensis Bem] Length = 254 Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 109/330 (33%), Gaps = 86/330 (26%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + N W + YADF+T+L A F+ ++ ++ TD + + Sbjct: 1 MARKQKGHEKEPNHERWLVSYADFITLLFAVFVTLYAMSQTDKKK-----------AEEV 49 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + + F + + ID I Sbjct: 50 LQSMRESFGYSSTSAGAKPTVIDTGSMSVIP----------------------------- 80 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + LT+ ++GK D + E Y L ++ K Sbjct: 81 ------SMHRLTQAPQRGKSRGGEKDFRATKAAIEAYLLKVGAQAK-------------- 120 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 V T G+++S+ + FD S+ ++ +L+ + Sbjct: 121 ------------------VSVSVTPRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVV 159 Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 L+ + I + GHTD P + NW LS RA + Q L K RIS +G Sbjct: 160 SSLSSYSNGIRVEGHTDNMPISSASFPSNWELSTARATNVLQYLTKQTDFDPYRISA-AG 218 Query: 315 FAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + +R + NRR+DI++ Q Sbjct: 219 YGEYRPVADNSDAEGRGKNRRVDIVLLSEQ 248 >gi|83589323|ref|YP_429332.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] gi|83572237|gb|ABC18789.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] Length = 249 Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 8/201 (3%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + + L ++ + + L + A + +LA+ + Sbjct: 39 SDTNAQKMAALANSLAQTLTGAPTTGILTSGGLTSIVPGIAPAPGQGDEGAELARARAEL 98 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + + V T G+++S+ D +F K S+ PE +L+++G LA Sbjct: 99 QQYIQQEGLESQVTLNTEERGLVVSVAD---AVLFPKGSADLTPEARDLLRQVGRALARL 155 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRL 320 + + GHTD P NW LS RA + +VL+ ++G+ +R+S +G+ +R Sbjct: 156 PNYLRVEGHTDNLPINTPAFPSNWELSTARATNVVKVLISEAGIKPERLSA-TGYGEYRP 214 Query: 321 KIASDPMN--SANRRIDILVE 339 ++ + NRR+DI+V Sbjct: 215 VAPNNSEADMARNRRVDIVVL 235 >gi|259907647|ref|YP_002648003.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96] gi|224963269|emb|CAX54753.1| Outer membrane protein, OmpA/MotB [Erwinia pyrifoliae Ep1/96] gi|283477490|emb|CAY73406.1| Chemotaxis protein motB (Motility protein B) [Erwinia pyrifoliae DSM 12163] Length = 302 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISII 229 + + +K+ K + L+ + + + + N +L T G++I I Sbjct: 92 QEGEVSKYQVDKLDKFKNVESLKKVKTHLEAMIESDPRLSNFKSNLLLTLTDDGLMIQIT 151 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRL 287 D + PMF S P +LQ + +L +S+ GHTD+ + + NW L Sbjct: 152 DSQERPMFKTGSESPESYMKGILQALVPLLKELPNSLSLTGHTDSLAYAGGSGGYSNWEL 211 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 S RA +A +VL+ +G+ +D I ++ G N NRRI ILV + Sbjct: 212 STGRANAARRVLVNAGLGDDHILRVIGTGSRMGLTDISADNPMNRRISILVLSK 265 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 7/191 (3%) Query: 14 FIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 II ++K ++ G+WKI YADFMT +MAFFLVMW++ ++ D ++ I YF Sbjct: 6 PIIRQRKRKHKKHAHHGGTWKIAYADFMTAMMAFFLVMWLLASSSDMQREMIADYFRMPI 65 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 K M ++ + I ++K VD N + + + Sbjct: 66 KPTMGQGNKTSFSESVIPGGGDDVIRQEG--EVSKYQVDKLDKFKNVESLKKVKTHLEAM 123 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + + + K++L + + TD ++ + P + IL + L Sbjct: 124 IESDPRLSNFKSNLLLTLTDDGLMIQITDSQERPMFKTGSESPESYMKGIL-----QALV 178 Query: 194 DLAKKISSTLS 204 L K++ ++LS Sbjct: 179 PLLKELPNSLS 189 >gi|311992350|gb|ADQ26748.1| flagellar stator protein [Aeromonas hydrophila] Length = 291 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 112/328 (34%), Gaps = 53/328 (16%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P N W + YADFMT+L A F+V++ + + Q Sbjct: 3 KKKKAEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQ------------ 50 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G + S + + K ++ KK+ ++ S+ Sbjct: 51 --GFIESLGKIGLISPAAGSPVMQGGTGILEPESKTTPSSPKKETVLEKDAPMAASDPFN 108 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + +E K + + + +KK Q L +I Sbjct: 109 ETIGASEKPSATESWPHKTKEQE--------------------WVQVTKKKLEQQLKAQI 148 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S K + E + ++I I +F S+ P+ I ++ KI +L Sbjct: 149 ES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVNKISGIL 194 Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAH 317 A + + GHTD + + R NW LS+ R A + +L + R+ G A Sbjct: 195 ADIPGKVVVTGHTDNSQAPVELYRSNWELSVLRSASIVHTLLTNPKLDATRVIA-QGVAD 253 Query: 318 HRLKIASDPM--NSANRRIDILVEDRQG 343 + + +D ANRR++I + + Sbjct: 254 AQPRYPNDTAEHRQANRRVEITLSQGKA 281 >gi|330830039|ref|YP_004392991.1| chemotaxis protein MotB [Aeromonas veronii B565] gi|328805175|gb|AEB50374.1| Chemotaxis protein MotB [Aeromonas veronii B565] Length = 291 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 121/327 (37%), Gaps = 51/327 (15%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P N W + YADFMT+L A F+V++ + + Q F Sbjct: 3 KKKKAEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQGF--------IE 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S G +PP S + I E +K + T +K ++ F + Sbjct: 55 SLGKIGLISPPAGSPLMQGGTGILEPESKTTPSSPKEETVLEKDAPMAASDPFNETIGAS 114 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + +++ + + ++K Q L +I Sbjct: 115 EKPSAT--------------------------EAWPHKTQEQEWVQVTKQKLEQQLKAQI 148 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S K + E + ++I I +F S+ P+ I ++ KI +L Sbjct: 149 ES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVNKIAGIL 194 Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A+ + + GHTD + + R+NW LS+ RA S Q ++ + + R G A Sbjct: 195 ANIPGQVVVTGHTDNSQAPVELYRNNWELSVLRASSIVQTMLTNPQLDARRVIAQGVADT 254 Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343 + + A+D ANRR+DI + + Sbjct: 255 QPRFANDTPEHRQANRRVDITLSQGKA 281 >gi|117619885|ref|YP_856319.1| flagellar motor protein MotB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561292|gb|ABK38240.1| chemotaxis protein MotB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 291 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 112/328 (34%), Gaps = 53/328 (16%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P N W + YADFMT+L A F+V++ + + Q Sbjct: 3 KKKKAEAPENHERWLVSYADFMTLLFALFVVLYSFAMAKQSETRVLIQ------------ 50 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G + S + + K ++ KK+ ++ S+ Sbjct: 51 --GFIESLGKIGLISPAAGSPVMQGGTGILEPESKTTPSSPKKETVLEKDAPMAASDPFN 108 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + +E K + + + +KK Q L +I Sbjct: 109 ETIGASEKPSATESWPHKTKEQE--------------------WVQVTKKKLEQQLKAQI 148 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S K + E + ++I I +F S+ P+ I ++ KI +L Sbjct: 149 ES-----------KDLEVEQLGSQLVIRI---GEKALFPADSAFLQPQFIPLVNKISGIL 194 Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAH 317 A + + GHTD + + R NW LS+ R A + +L + R+ G A Sbjct: 195 ADIPGKVVVTGHTDNSQAPVELYRSNWELSVLRSASIVHTLLTNPKLDATRVIA-QGVAD 253 Query: 318 HRLKIASDP--MNSANRRIDILVEDRQG 343 + + +D ANRR++I + + Sbjct: 254 AQPRYPNDTPEHRQANRRVEITLSQGKA 281 >gi|167574625|ref|ZP_02367499.1| Chemotaxis lafU protein [Burkholderia oklahomensis C6786] Length = 303 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 P +KE+ + + + LA +I + + L D V G+ ++I D Sbjct: 97 RAPEPADAKERDDTIDTLEARRKLAARIRAEANALGMDG---NVDVAINDDGVRVTIHDS 153 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSL 289 MF + S + + +L+ + VL+ T + I GHTDA+ + +NW LS Sbjct: 154 SEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASVFSNNWSLSS 213 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 RA A Q L+ G+ E ++ ++SG + DP + NRR+++L+ Q Sbjct: 214 RRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLLLTSQA 267 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 11/184 (5%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 + N++ I K+ G+WK+ +ADF LMA F+V+W++N T +D ++ + Sbjct: 2 NPNRDAGHGPTIIKRAGRHHEEGGGGAWKVAFADFTLALMALFMVLWVMNVTPEDERRRV 61 Query: 66 EQYFNPFGKNLMTASKGIFDEQN------PPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 GK + GIF++++ P + + + D +++D Sbjct: 62 AAEI--AGKPIFEGGVGIFEQRSRKLVLVPHDELPRGRAPEPADAKERDDTIDTLEARRK 119 Query: 120 QKKQYQRLENNIFYLSN---SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + + N + N + + + ++ SEKG +S L+ + P Sbjct: 120 LAARIRAEANALGMDGNVDVAINDDGVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAP 179 Query: 177 PLSK 180 LS Sbjct: 180 VLSS 183 >gi|319653376|ref|ZP_08007476.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2] gi|317394860|gb|EFV75598.1| flagellar motor protein [Bacillus sp. 2_A_57_CT2] Length = 265 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 122/330 (36%), Gaps = 74/330 (22%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++K + SW + YAD +T+L+A F+V++ +++ D Q F K Sbjct: 3 RRKKKQHHEEHVDESWLLPYADLLTLLLALFIVLFAMSSVD-------AQKFQKLSKAFN 55 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G + S Sbjct: 56 DVFSG----------------------------------------------GTGVFEFPS 69 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 E S SEK S + EE + L KEK+ ++ L +L + Sbjct: 70 PMPEGQMQSTDAVSEKP-----------SKDLEEMAAMDELEKEKLKQAADQEELAELQQ 118 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++++ + N+ + T G+L+SI D +F S+ + + + +I E Sbjct: 119 RVNAFIEN---QNLADKLETSLTTEGLLVSIRDN---VLFGSGSAEVREQDLNMASEIAE 172 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I I GHTD P RN + NW LS+ RA + ++++K+ + + GF Sbjct: 173 LLIMDPPRNIIISGHTDNVPIRNSSFESNWELSVMRAVNFMKIILKNDQLDPKWFSAKGF 232 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343 + ++ + NRR++IL+ R G Sbjct: 233 GEFQPVAGNNTKEGRAKNRRVEILILPRTG 262 >gi|258513971|ref|YP_003190193.1| OmpA/MotB domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257777676|gb|ACV61570.1| OmpA/MotB domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 275 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 13/182 (7%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + E+ PP+ ++I K ++L++L K++ + N+ +L G+ Sbjct: 67 AGPSAIESNPSPPIQVQQI--QKEAEQLKELQKELHDLIE---KKNLTGHILVSIEERGL 121 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARD 283 ++S +D +F S+ P+ ++Q++G++L S I I GHTD P Sbjct: 122 VVSFLDP---VLFPLGSAQLTPKAKNIVQEVGQILLKSDNYIRIEGHTDDIPINTAIYPS 178 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 NW LS RA S Q L+K+ +R++ +G+ +R ++ +D M+ NRR+DI+V Sbjct: 179 NWELSAARATSVVQELIKTMSFPPERLAA-TGYGEYRPRVPNDSMDHKQMNRRVDIVVVR 237 Query: 341 RQ 342 + Sbjct: 238 SK 239 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GK 74 + +K N W I Y+D +T+LM FF++M+ ++ + A+ + G Sbjct: 1 MSRKRKGKAEKENGERWLITYSDLITLLMIFFIIMFAMSEISNQKFVAMASSLSIALGGS 60 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114 + G ++ P Q + E + + +L Sbjct: 61 EHILPGAGPSAIESNPSPPIQVQQIQKEAEQLKELQKELH 100 >gi|167567201|ref|ZP_02360117.1| Chemotaxis lafU protein [Burkholderia oklahomensis EO147] Length = 303 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 5/174 (2%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 P +KE+ + + + LA +I + + L D V G+ ++I D Sbjct: 97 RAPEPADAKERDDTIDTLEARRKLAARIRAEANALGMDG---NVDVAINDDGVRVTIHDS 153 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSL 289 MF + S + + +L+ + VL+ T + I GHTDA+ + + +NW LS Sbjct: 154 SEKGMFARRSDVLDLQFDALLKALAPVLSSVTNKLVIVGHTDATQYAGASVFSNNWSLSS 213 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 RA A Q L+ G+ E ++ ++SG + DP + NRR+++L+ Q Sbjct: 214 RRALRARQALIDGGLGEPQLFQVSGMGDSIPAVPDDPRHDVNRRVELLLLTSQA 267 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 11/184 (5%) Query: 6 DKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 + N++ I K+ G+WK+ +ADF LMA F+V+W++N T +D ++ + Sbjct: 2 NPNRDAGHGPTIIKRAGRHHEEGGGGAWKVAFADFTLALMALFMVLWVMNVTPEDERRRV 61 Query: 66 EQYFNPFGKNLMTASKGIFDEQN------PPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 G+ + GIF++++ P + + + D +++D Sbjct: 62 AAEI--AGQPIFEGGVGIFEQRSRKLVLVPHDELPRGRAPEPADAKERDDTIDTLEARRK 119 Query: 120 QKKQYQRLENNIFYLSN---SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + + N + N + + + ++ SEKG +S L+ + P Sbjct: 120 LAARIRAEANALGMDGNVDVAINDDGVRVTIHDSSEKGMFARRSDVLDLQFDALLKALAP 179 Query: 177 PLSK 180 LS Sbjct: 180 VLSS 183 >gi|119476294|ref|ZP_01616645.1| flagellar motor protein [marine gamma proteobacterium HTCC2143] gi|119450158|gb|EAW31393.1| flagellar motor protein [marine gamma proteobacterium HTCC2143] Length = 344 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 74/324 (22%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++++ D ++ W + YADF+T+L AFF+VM+ I+ ++ K + Q + Sbjct: 3 RRRIVEDSVSHD--RWLVSYADFITLLFAFFVVMYSISQVNEGKYKVLSQTLSE------ 54 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 +F Q P + + + + L Sbjct: 55 -----VFARQGP-------------------GVPERTLDPFQIGDVVKSNPQSFIELEAE 90 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 ++ +S SE+G + + + Sbjct: 91 NDGDNSGSSANEQSERG--------------------------------ALPAEFEQINQ 118 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI L GL+ N V + + + + +++ +F S + VL+ I Sbjct: 119 KIDEALGGLLKSN---QVTVRGSEKWLEVEL---KSSLLFGSGDSTLSVPAVGVLESIAS 172 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L T I + G TD P ++ NW LS RA + + ++ G+S DR++ I G+ Sbjct: 173 ILKDQTNPIRVEGFTDNQPINSVRYPSNWELSAGRASAVVKFFIEEGLSADRLAAI-GYG 231 Query: 317 HHRLKIASD--PMNSANRRIDILV 338 H+ +D + NRR+ +++ Sbjct: 232 EHQPVTDNDSEEGRAENRRVVLMI 255 >gi|94500541|ref|ZP_01307072.1| motility protein, MotA family protein [Oceanobacter sp. RED65] gi|94427331|gb|EAT12310.1| motility protein, MotA family protein [Oceanobacter sp. RED65] Length = 336 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 2/227 (0%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 N Q + ++ + + K + G ++ S + L Sbjct: 47 INSSNQEEIEAVAGYFNDPAAYEDGNKVPSKWVIDLGGSPSVQDNVAVSETVDPTKVLQA 106 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 E + RL+ L ++ + + + + TR G+ I I+D+ N PM Sbjct: 107 EEIESAAEAIERARLESLQSEVMDKINASATLTPYKDQLKVDITREGLRIQIVDKTNRPM 166 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSA 295 F+ SS +L ++ +L ISI GHTD+S N NW LS RA +A Sbjct: 167 FNPGSSRLKYYAEDILYEMAPILQAVPNRISITGHTDSSGSANPWDTGNWELSAGRANAA 226 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + L +G+ ++I+++ G DP + NRRI I+V +++ Sbjct: 227 RRALADAGLDSEKIAQVVGMGDKAHFNIEDPTDPVNRRIAIVVLNKR 273 >gi|189423111|ref|YP_001950288.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] gi|189419370|gb|ACD93768.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] Length = 271 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 107/326 (32%), Gaps = 66/326 (20%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + N W + YADF+T+L A F+ M+ ++ TD + + Sbjct: 4 KKEPEKHANHERWLVSYADFITLLFAVFVTMYAMSQTDKKKVEEVAAAMR---------- 53 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G + Q QR + Sbjct: 54 --------------------------------ESFGYSTQAAAGQRGVLQSQDIKPIPAI 81 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + + ++ + ++K K + +K +++ I Sbjct: 82 KPEMAVIPMINKMPPAGPRQGGMDKGRGKTK---------------AEEKEFKEIQSAIE 126 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + L + V TR G+++S+ + FD S++ P +L I E + Sbjct: 127 AYL---IKHGAQNKVSIGITRRGLVVSL---KEAGFFDSGSAVIKPAGYQLLNTILEAMT 180 Query: 261 HSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + + GHTD P + NW LS+ RA + + L K+ E +G+ R Sbjct: 181 QYSNPLRVEGHTDNIPISTPLFPSNWELSVSRATNVLRYLQKNYDVEPGKLSATGYGEFR 240 Query: 320 L--KIASDPMNSANRRIDILVEDRQG 343 + ++ S NRR+DI++ Sbjct: 241 PTAENSTPEGRSKNRRVDIVLLSGDA 266 >gi|292492681|ref|YP_003528120.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291581276|gb|ADE15733.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 282 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 93/321 (28%), Gaps = 71/321 (22%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 + + +W I AD M++LM+FF+++ + D K + Sbjct: 12 PQEEKSGAPAWVITLADLMSLLMSFFVLLLSFSELDLQKYKQVAGSM------------- 58 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 K + I Q+ R + + Sbjct: 59 --------------KFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWDEIRQDTIDE 104 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K +L + +D ++ + Sbjct: 105 TKQTLDFSEARIRDTEAK-----------------------------------VAELQNM 129 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + + ++ E I+I I + F S+ + VL K+ VL Sbjct: 130 LQNEIDQGL---IVLERIGEQIIIRI---QEKGSFPSGSASFNQDFKPVLDKLRTVLNRI 183 Query: 263 TEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD P + R NW LS RA S L + + I G A + Sbjct: 184 EGKIVVAGHTDDLPIHTSRFRSNWELSTARAVSVIHHLFATDEIAPQRFVIEGHADTQPL 243 Query: 322 IASDPMNSA--NRRIDILVED 340 +D + NRRI+I + Sbjct: 244 APNDTAENRVHNRRIEITIMP 264 >gi|297618036|ref|YP_003703195.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145873|gb|ADI02630.1| OmpA/MotB domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 258 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L+ + K+++ + + + ++ G++IS+ D +F K S + P Sbjct: 96 QGNLEAIEKQLAEYIKS--EEGLAGNIVLMEQERGLVISLKDT---LLFPKGSDVLTPRA 150 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSE 306 +++K+GE L + + GHTD P NW LS+ RA + VL G+ Sbjct: 151 HEIIRKVGESLKTIPNYVRVEGHTDDLPINTPKFPSNWELSVLRATNVVHVLAGEVGIPP 210 Query: 307 DRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 DR+S +G+ +R + +D P + NRR+DI++ ++ Sbjct: 211 DRLSA-TGYGEYRPLMPNDSEPNRAMNRRVDIVILKQK 247 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KK+ + ++ W + Y+D +T+LM FF+VM+ ++ D +A+ N L Sbjct: 6 KKEQEGGEGGPSMERWLLTYSDLITLLMIFFVVMYTMSQVDAQKFQALA---NSLSMVLS 62 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 S I + P ++ + + T Q +Y + E + Sbjct: 63 GKSISIMETPGPSVVEGRSGQIIREGQGDTPTLQGNLEAIEKQLAEYIKSEEGLAGNIVL 122 Query: 138 QQSEHC 143 + E Sbjct: 123 MEQERG 128 >gi|167725893|ref|ZP_02409129.1| chemotaxis LafU protein [Burkholderia pseudomallei DM98] gi|167905052|ref|ZP_02492257.1| chemotaxis LafU protein [Burkholderia pseudomallei NCTC 13177] Length = 271 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 9/220 (4%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + ++ + R G K + + P + + R++ Sbjct: 10 MNVTPEKERKQVAAEIAGRPFFDGGVGIFEQRSRKPVVAPFDAQQPDRMRRRTSGAARER 69 Query: 191 RLQDLAKKISSTLSGLVADNIVK-----GVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + L ++ L+ + D + V G+ I+I D MF++ S Sbjct: 70 TIDSLQQR--RALAARIMDEASRLGMDGNVATAINDDGVRITIHDSDKQGMFERRSDALN 127 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSG 303 P I +L + VL T + I GHTDA+ + ++ +NW LS RA A QVL G Sbjct: 128 PPFIRLLTALVPVLGTVTNKMVIVGHTDATQYADASVFSNNWNLSSRRALRARQVLADGG 187 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + R+ +ISG + +P + NRR+++L+ + Sbjct: 188 MDAQRMFQISGMGDSVPAVPDNPNHDMNRRVELLLLTSRA 227 >gi|169831941|ref|YP_001717923.1| OmpA/MotB domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638785|gb|ACA60291.1| OmpA/MotB domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 257 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 12/205 (5%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + ++ +G L ++ D ++ P + + L +A Sbjct: 50 AALARSLHHALGGQGSVLIEAPDASLGPDE----RFPMELDKGFVKSSDTAFLAQMAPVQ 105 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + + T G++ISI D +F S+ P ++ K+G +L Sbjct: 106 KQVQELMEEAGLTAHIEMTTEERGLVISIQDT---VLFATGSADLTPTAREIMDKLGLIL 162 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 + I I GHTD P NW LS R+ S + L+ +R+S +G+ Sbjct: 163 LQTPNYIRIEGHTDNVPINTPRFPSNWELSAARSTSVVRYLIARHNFPPERLSA-TGYGE 221 Query: 318 HRLKIASDP--MNSANRRIDILVED 340 +R + +D NRR+D +V Sbjct: 222 YRPRDTNDTAQGRQRNRRVDFVVLS 246 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 42/118 (35%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+TVL+ FF+V++ ++ D A+ + + + D P+ Sbjct: 20 WVLPYADFVTVLLCFFIVLYSLSTIDAHKFAALARSLHHALGGQGSVLIEAPDASLGPDE 79 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ++D + + Q ++ ++ + + S+ Sbjct: 80 RFPMELDKGFVKSSDTAFLAQMAPVQKQVQELMEEAGLTAHIEMTTEERGLVISIQDT 137 >gi|332669204|ref|YP_004452212.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338242|gb|AEE44825.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484] Length = 301 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 109/320 (34%), Gaps = 52/320 (16%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 ++ N W + Y+D +TVLMA F+V++ I+ D + A+ + T+ + Sbjct: 15 EEEHVNHERWLVSYSDMITVLMALFIVLFAISQVDQEKYIALRDSLAAGFMDTTTSPSVL 74 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 + S + D S D +G + + + Sbjct: 75 DGTDGTLDGKSTQSENTPADGTAGMVSADDGLGQQAAVPPVPATPTTDASVDPATLAAAQ 134 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + L +L +I+ L Sbjct: 135 AEAAH-------------------------------------------LTELRDRIAQAL 151 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + A+ + + V G+++ ++ + F + + VL ++ Sbjct: 152 A---ANGLDQAVRMRIDERGLVLGLV--ADDVFFAPARAELTDTARRVLDVASPLIVGIG 206 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI 322 E +S+ GH + P NW LS DRA + L++ G+ RI + GF R + Sbjct: 207 ENVSVEGHANVIPVSGRYPTNWELSADRATQVLRHLVEVDGMPGPRIMAV-GFGDTRPLV 265 Query: 323 ASD-PMN-SANRRIDILVED 340 A D P +ANRR+D+++ Sbjct: 266 AGDSPEALAANRRVDLVILS 285 >gi|302872092|ref|YP_003840728.1| OmpA/MotB domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574951|gb|ADL42742.1| OmpA/MotB domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 257 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 R+ ++L I + GL+ ++ ++G VL G+ I + D +FD S+ Sbjct: 90 ATKNRQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145 Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299 P+ V+ +I ++L I I GHTD P N NW LS RA S Q +L Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S V +R + G+ +R ++ + NRR+ I++ Sbjct: 206 RVSKVKPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247 >gi|188586029|ref|YP_001917574.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350716|gb|ACB84986.1| OmpA/MotB domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 269 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + I +E+ P E+ + + ++ ++D+ ++ + ++ + V+ ET Sbjct: 68 PEHRAQIPREDPNITLPEPSERQVPSEEEQMMEDIYDQLEDYIE---DADLAEVVMLETE 124 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 GI+I D +FD + E++ +L I E+L I + G TD P Sbjct: 125 ERGIVIRFQD---KILFDSGRAELRSESLEILGDIAEILEEIPNEIKVEGFTDDVPIDTP 181 Query: 281 A-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 NW LS RA + + L + G+ R+ + +G+ +R + +D NRR+DI Sbjct: 182 EFPSNWELSAARATTVLRYLSEEGGLDPGRL-QATGYGEYRPMVPNDSPENRQLNRRVDI 240 Query: 337 LVE 339 V Sbjct: 241 TVL 243 >gi|329928770|ref|ZP_08282619.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5] gi|328937551|gb|EGG33969.1| putative chemotaxis protein MotB [Paenibacillus sp. HGF5] Length = 271 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 58/320 (18%), Positives = 112/320 (35%), Gaps = 70/320 (21%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 W I YAD +T+L+ FF+VM+ ++ D + K + Q + + I + Sbjct: 15 EGEQRDRWMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSL----QATFQSGDSILE 70 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + ++ + +E+ KN Sbjct: 71 MGS--------------------------------------------GITGTADTENHKN 86 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + + + K T E PL++ ++ +++ L + I + Sbjct: 87 PPPKPAADEEGEDKDTGQE------------PLTERELAFRAQEEELANFMGLIQQYVK- 133 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 + + + + GI I++ D +FD + P VL K+ + Sbjct: 134 --DNQLEEDIFISDEPQGIAITLSD---RFLFDVGKAELKPGAAPVLGKLASLFGDLNTT 188 Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 +SI GHTD P + +DNW LS RA S + ++ + + +G+A R Sbjct: 189 VSIEGHTDNVPIGRYSSYKDNWELSGARAMSVLRFFLEHSKLDPGGFQYAGYADTRPAAD 248 Query: 324 SDPMN--SANRRIDILVEDR 341 + NRR++I V + Sbjct: 249 NATAEGKQKNRRVEITVLRQ 268 >gi|78043824|ref|YP_359811.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901] gi|77995939|gb|ABB14838.1| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901] Length = 266 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 10/190 (5%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRK--KRLQDLAKKISSTLSGLVADNIVKGVL 216 D+ N L S+E++ A+ K K +LA + S + A + V Sbjct: 66 AGPDVVTGSNATVQGNLGKASQEQLPAVDEKDLKETANLALIKAKVDSYIKAKGLNASVT 125 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G++IS D +F S+ P+ ++++IGE+L I I GHTD P Sbjct: 126 ATLEERGVVISFKD---AILFKLGSAELTPQAKAIVRQIGEILLPLPNYIRIEGHTDNLP 182 Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANR 332 + NW LS RA S L+ R+S + G+ +R K+ + + NR Sbjct: 183 INTSRFPSNWELSTARATSVVHELIDGLHFPPYRLSAV-GYGEYRPKVPNTSEQNRQKNR 241 Query: 333 RIDILVEDRQ 342 R+DI++ + Sbjct: 242 RVDIVILRSK 251 >gi|312793260|ref|YP_004026183.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180400|gb|ADQ40570.1| OmpA/MotB domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 257 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 ++ ++L I + GL+ ++ ++G VL G+ I + D +FD S+ Sbjct: 90 ATKNKQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145 Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299 P+ V+ +I ++L I I GHTD P N NW LS RA S Q +L Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S V +R + G+ +R ++ + NRR+ I++ Sbjct: 206 RVSKVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247 >gi|119503684|ref|ZP_01625767.1| Flagellar motor protein [marine gamma proteobacterium HTCC2080] gi|119460746|gb|EAW41838.1| Flagellar motor protein [marine gamma proteobacterium HTCC2080] Length = 312 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 103/320 (32%), Gaps = 53/320 (16%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 D P +W +AD M++LM FF+++ + D K I Sbjct: 8 DSGPAGSPAWMATFADLMSLLMCFFVIILSFSELDVIKYKQIAASM-------------- 53 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 K + + + ++ + Q E ++ Sbjct: 54 -------------KNAFGVQQKMEITAIPKGTSVVATEFQPGIPEPTPLERIEQVTTDQD 100 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 NSL + ++ + + E ++L K ++ Sbjct: 101 LNSLRIGNPDARETEAREVKDLITEEMEMLIEETELDAEMLRRLLKAEIE---------- 150 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + E+ I+I I R F S+ + VL K G L Sbjct: 151 --------AGQIDVESEGRTIVIRI---REKGSFPSGSAQLDIGFLEVLDKTGFALNEIK 199 Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 +I I GHTD P NW LS R+ + + L+ + R++ ISG A R + Sbjct: 200 GLIFIEGHTDNVPINTARYGSNWDLSAARSVAVAERLLDGPKMDPIRLT-ISGHADTRPQ 258 Query: 322 IASD--PMNSANRRIDILVE 339 + + NRR++++V+ Sbjct: 259 APNQSWEGRAQNRRVEVVVK 278 >gi|312877226|ref|ZP_07737195.1| OmpA/MotB domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796035|gb|EFR12395.1| OmpA/MotB domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 257 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 ++ ++L I + GL+ ++ ++G VL G+ I + D +FD S+ Sbjct: 90 ATKNKQMTEEELINDIQKQILGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145 Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299 P+ V+ +I ++L I I GHTD P N NW LS RA S Q +L Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S V +R + G+ +R ++ + NRR+ I++ Sbjct: 206 RVSKVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247 >gi|304317567|ref|YP_003852712.1| OmpA/MotB domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779069|gb|ADL69628.1| OmpA/MotB domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 240 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 9/174 (5%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETTRTGILISIID 230 NY + S IL + I S L L+ N ++ ++ + G +IS+ D Sbjct: 61 NYVVGQYSGNSILDSIKTTNNTSTDNTIESQLDKLIKQNNLQNMVTYKVDERGFVISLND 120 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +FD S+ P+ L KIG +L I + G+TD P N NW LS+ Sbjct: 121 T---LLFDTGSADVKPDQKATLIKIGNILKAMPNYIRVEGYTDNVPINNSQFHSNWELSV 177 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA + ++L+ + +IS + G+ +R + +D NRR+DI++ + Sbjct: 178 IRATNVVEILVNDVKIDPAKISAV-GYGEYRPIVPNDSDKNRQLNRRVDIVIMN 230 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +++ D+ N W + Y+D +T+LM FF+V++ I+ + + I Sbjct: 1 MRRFDDNDEKKVNNERWLLTYSDMITLLMIFFIVLYTISTVNSQKFQQIAASL 53 >gi|222529065|ref|YP_002572947.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|312622679|ref|YP_004024292.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|222455912|gb|ACM60174.1| OmpA/MotB domain protein [Caldicellulosiruptor bescii DSM 6725] gi|312203146|gb|ADQ46473.1| OmpA/MotB domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 257 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSS 242 ++ ++L I + GL+ ++ ++G VL G+ I + D +FD S+ Sbjct: 90 ATKNKQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSA 145 Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VL 299 P+ V+ +I ++L I I GHTD P N NW LS RA S Q +L Sbjct: 146 KLTPQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEIL 205 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S V +R + G+ +R ++ + NRR+ I++ Sbjct: 206 RVSKVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247 >gi|312127873|ref|YP_003992747.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311777892|gb|ADQ07378.1| OmpA/MotB domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 257 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 11/160 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++ ++L I + GL+ ++ ++G VL G+ I + D +FD S+ Sbjct: 93 NKQMTEEELINDIQKQVLGLIKEHGIEGKVLVIQEERGLSILLKD----VLFDTGSAKLT 148 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKS 302 P+ V+ +I ++L I I GHTD P N NW LS RA S Q +L S Sbjct: 149 PQAKGVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEILRVS 208 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 V +R + G+ +R ++ + NRR+ I++ Sbjct: 209 KVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247 >gi|308071044|ref|YP_003872649.1| flagellar motor protein [Paenibacillus polymyxa E681] gi|305860323|gb|ADM72111.1| Flagellar motor protein [Paenibacillus polymyxa E681] Length = 271 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 116/320 (36%), Gaps = 75/320 (23%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 + W I YAD +T+L+ FF+VM+ +++ D + Q ++ I ++ + Sbjct: 17 HRDRWMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSL----QDTFHKGDSILEQGS 72 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 I + D + +KN K + ++K+ Sbjct: 73 --------GITGTADRYTSKNPPTTKQPAADKKEAGS----------------------- 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 K T+ E++ +E K LQ+L I ++ Sbjct: 102 ---------TKLTEREQAFRTQE------------------KELQNLMGVIQEYIT---D 131 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + + + GI+I++ D +FD+ + + L K+ + ISI Sbjct: 132 NKLENQIFVSDQPRGIVITLND---RFLFDQGRAALKQGSANTLSKLASLFRDLKTPISI 188 Query: 269 RGHTDASPF-----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321 GHTD PF + +DNW LS RA S + + + +G+A R Sbjct: 189 EGHTDNIPFTRSSNSSTYKDNWELSGARALSVLRFFLDREQLSPSGFQYAGYADTRPVGD 248 Query: 322 IASDPMNSANRRIDILVEDR 341 +++ NRR++I V + Sbjct: 249 NSTEAGRQKNRRVEITVLRQ 268 >gi|170737030|ref|YP_001778290.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819218|gb|ACA93800.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 340 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 7/220 (3%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + E + + L+ ++ K Sbjct: 77 SARDEETRRKMDAMVESALYDDSDMLAGAPLGPNTHALQDTLASHVAVDEAGEVKRGQPM 136 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++ + LA+++ ++ V T G+ + + D +F ++P Sbjct: 137 ADSREAMDVLAERVRKLGK---DAGVLDNVQAIVTPMGLRVMLHDTEKRGVFVSGGAVPS 193 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLMKS 302 +L K+G ++ + + GHTD+ P+RN +R NW LS+DRA SA +++ Sbjct: 194 EPFRPMLIKLGALMGSIGNPLFVMGHTDSVPYRNSDSGSRSNWDLSVDRAMSARSWVLQG 253 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 GV+ +++ ++ G A + ++P + NRRI+ LV + Sbjct: 254 GVNSEQVMQVIGMADRAPLV-NNPRAAINRRIEFLVLTPE 292 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 34/51 (66%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 +I+K+ + D ++ G WK+ +ADF L+ F+++W ++A D++T++ + Sbjct: 37 LIVKRPLRRDYDDDHDGGWKVAFADFCLALLCVFMLLWALSARDEETRRKM 87 >gi|332294873|ref|YP_004436796.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796] gi|332177976|gb|AEE13665.1| OmpA/MotB domain protein [Thermodesulfobium narugense DSM 14796] Length = 243 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 11/206 (5%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL--QDLAKK 198 + ++ + + L ++ +++ + P S + + L Q+ + K Sbjct: 44 SMATINASKFAATAQALREAFGGYTILDRGSSVIGEPGSTTQSAPVVPDSALKAQEASLK 103 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I+ L + N + T G LISI+ + +FD + P+ +L KI V Sbjct: 104 IAEILRQSLNPNQFSVI---QTERGYLISIL--TDKILFDSGKANLKPDAFPLLTKIAAV 158 Query: 259 LAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + GHTD P + NW LS RA S + ++ G+S R+ I+G+A Sbjct: 159 LKKIDNEVYVEGHTDNVPIHTVEFPSNWELSAARAASVAKYFIEQGISPSRLV-IAGYAD 217 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 R ++D NRRIDIL+ + Sbjct: 218 TRPVASNDTPQGRQKNRRIDILITKK 243 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLMTASKG 82 W + Y+D +T+LMAFF++++ + + A Q G ++ Sbjct: 16 HDSAGGMRWLLTYSDMITLLMAFFILLFSMATINASKFAATAQALREAFGGYTILDRGSS 75 Query: 83 IFDEQNPPERSSQNKIDLSIDEH 105 + E +S+ D ++ Sbjct: 76 VIGEPGSTTQSAPVVPDSALKAQ 98 >gi|114799250|ref|YP_759621.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444] gi|114739424|gb|ABI77549.1| putative chemotaxis protein MotB [Hyphomonas neptunium ATCC 15444] Length = 226 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A + + A+ ++ + V + TG+ I ++D P+F+ S Sbjct: 69 AFHSDQAVSGAAELLALLRQSEGLKAAGESVQLSSDATGVRIELVDTAGRPLFETGSGAL 128 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 + ++Q L+ +SI GHTDA A NW LS RA A + L +G Sbjct: 129 TADGAALIQAAAMSLSGLPYALSIEGHTDAFSMTGAASSNWELSSQRANEARRALEMAGF 188 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 DR+ ++G+A R A P +ANRRI + V Sbjct: 189 GTDRVKAVTGYADTRPLNAGQPHLAANRRISLQV 222 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 G+WK+ YADF+T L+AFF++MW+++ + + I F Sbjct: 23 GTWKLAYADFLTALVAFFMLMWLVSGVSKEDRAVIASEFT 62 >gi|310644267|ref|YP_003949026.1| ompa/motb domain protein [Paenibacillus polymyxa SC2] gi|309249218|gb|ADO58785.1| OmpA/MotB domain protein [Paenibacillus polymyxa SC2] Length = 271 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 117/316 (37%), Gaps = 75/316 (23%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD +T+L+ FF+VM+ +++ D + Q ++ I ++ + Sbjct: 21 WMITYADLITLLLIFFVVMYAMSSLDAKKYDVVVQSL----QDTFHKGDSILEQGS---- 72 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 I + D + +KN K ++N+K+ Sbjct: 73 ----GITGTADRYTSKNPPATKQPASNKKEAGS--------------------------- 101 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K T+ E++ K+E K LQ+L I ++ + + Sbjct: 102 -----TKLTEREQAFRKQE------------------KELQNLMGVIQEYIT---DNKLQ 135 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + GI+I++ D +FD+ + + L K+ + ISI GHT Sbjct: 136 NQIFVSDQPRGIVITLND---RFLFDQGRAALKQGSANTLSKLASLFRDLKTPISIEGHT 192 Query: 273 DASPF-----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASD 325 D PF + +DNW LS RA S + + + +G+A R +++ Sbjct: 193 DNIPFTRSSNSSTYKDNWELSGARALSVLRFFIDREQLSPSGFQYAGYADTRPVGDNSTE 252 Query: 326 PMNSANRRIDILVEDR 341 NRR++I V + Sbjct: 253 AGRQKNRRVEITVLRQ 268 >gi|20807043|ref|NP_622214.1| flagellar motor protein [Thermoanaerobacter tengcongensis MB4] gi|254479612|ref|ZP_05092920.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653] gi|20515530|gb|AAM23818.1| Flagellar motor protein [Thermoanaerobacter tengcongensis MB4] gi|214034455|gb|EEB75221.1| OmpA family protein [Carboxydibrachium pacificum DSM 12653] Length = 237 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 11/176 (6%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIID 230 NY L S + ++ + + D ++ + L + ++ ++G V G+++S+ D Sbjct: 59 NYILGKYSGKSVVPGNAENK--DNLGEVQAQLQAFIKESNLQGMVSTYRDERGLVVSLQD 116 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +FD S+ PE VL KIG++L + I + G TD P N NW LS+ Sbjct: 117 T---LLFDLGSADVHPEEKEVLIKIGKMLKNLPNYIRVEGFTDDLPIHNQKFDSNWELSV 173 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 RA + ++L+ G+ RIS + G+ +R + +D NRR+DI++ + + Sbjct: 174 IRATTVVKILVNEVGIEPQRISAV-GYGEYRPIVPNDSEEHRRLNRRVDIVIMNTE 228 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +++ + PN+ W + Y+D +T+L+ FF+VM+ ++ + + + Sbjct: 2 RRLEDESKPNH-ERWLLTYSDMITLLLIFFIVMYTMSTLNAAKFAQLAGSLS 52 >gi|295696765|ref|YP_003590003.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912] gi|295412367|gb|ADG06859.1| OmpA/MotB domain protein [Bacillus tusciae DSM 2912] Length = 266 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 10/191 (5%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 KG + S P + + +++L + ++ S + + Sbjct: 66 KGLGTTGLIAAQPSAGPPGRVPPAPDFLKTPEQVAEERQLAQIKLQLQSFIQ---KQGVA 122 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V+ E G+LIS+ D +FD + PE +L + LA + I GHT Sbjct: 123 GQVVVEDKPKGLLISLRD---VILFDTGKADLKPEARKLLDGLLPFLAQVGNPLEIEGHT 179 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNS 329 D P NW LS RA + + L G+ R+S +G+ R ++D + Sbjct: 180 DNRPIHTAQFPSNWELSTARALTVLEYLQAKGIDPKRLSA-TGYGEWRPVASNDNPEGQA 238 Query: 330 ANRRIDILVED 340 NRR++I +E Sbjct: 239 LNRRVNITIER 249 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 8/170 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ +D N W I Y+D +T+LM FF++M+ ++ D + + N Sbjct: 1 MRRRRRPEDGKINQERWLITYSDLITLLMIFFVIMYAMSKVDMYKFVNLSASLSQALYNQ 60 Query: 77 MT------ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + G+ Q P ++ + D T V + K Q Q Sbjct: 61 NQVQLKGLGTTGLIAAQ--PSAGPPGRVPPAPDFLKTPEQVAEERQLAQIKLQLQSFIQK 118 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + K L + DL+ K + LP L++ Sbjct: 119 QGVAGQVVVEDKPKGLLISLRDVILFDTGKADLKPEARKLLDGLLPFLAQ 168 >gi|220932514|ref|YP_002509422.1| OmpA/MotB domain protein [Halothermothrix orenii H 168] gi|219993824|gb|ACL70427.1| OmpA/MotB domain protein [Halothermothrix orenii H 168] Length = 245 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 193 QDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + +K+ ++ V + + V E T+ G+++ + ++D + P + Sbjct: 87 NQVFEKVMGQINRYVEKEKLSDRVKMELTKRGLVVRLT---GQVLYDIGKAEIKPGGKRL 143 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRI 309 L +I ++ I++ GHTD P N NW LS RA + + + G+ R+ Sbjct: 144 LDEIAGIIEKIPNEIAVEGHTDNWPIHNEQFPSNWELSTTRATNVIKYFIERHGIDPSRL 203 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S +G++ +R +D + NRR++I++ + Sbjct: 204 SA-AGYSEYRPLYPNDTVEHRAKNRRVEIVILN 235 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 KK ++ N W + Y D MT+L+ FF+ ++ + + + + +M Sbjct: 5 KKDLEEENKNTSPGWMVTYGDMMTLLLVFFVFLYSFSVMNVEKFEGFISALQA-KLGVMP 63 Query: 79 ASKGIFDEQNPPERSSQNKIDLSID 103 K I DE+ S N+ + S Sbjct: 64 GGKTIMDEELLSRGSIGNRFNPSNQ 88 >gi|152975140|ref|YP_001374657.1| flagellar motor protein MotS [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023892|gb|ABS21662.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 13/216 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKR 188 ++ L + S + K L K +D E+ + +P +S EK + Sbjct: 18 DLTMLLLTFFVLLVATSKQDTVKLSKMLEKFSDAEQVDAEVMENTIPDISHEKNSEKVSS 77 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KKR+ +L KK+ G V +N ++ V TG+ I I+D +FD + PE Sbjct: 78 KKRMDNLYKKLK----GYVTENGIQEVQVYREDTGVSIVIVDN---LIFDTGDANVKPEA 130 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSE 306 ++ ++ I + GHTD+ P RN NW LS R A + ++ + Sbjct: 131 KEIISRLAGFFQSVPNPIVVEGHTDSRPIRNAKFPSNWELSSARAANMIHHLIEVYEIDP 190 Query: 307 DRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 +R++ + G+A + +D P N + NRR+ I V++ Sbjct: 191 NRLAAV-GYADTKPVAPNDSPDNWAKNRRVVIYVKE 225 >gi|23010955|ref|ZP_00051470.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 464 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 106/295 (35%), Gaps = 6/295 (2%) Query: 47 FFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHI 106 F + W + A + + A P R+ + D S + Sbjct: 168 FDPLYWQVAAL-PRQRTDNPGALDTVAAAPSEARLDARARTGAPGRAKEATKDASKESAR 226 Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 L + E + + S E K+ D++ + Sbjct: 227 DVARQSLNDAMRQAGMKLASAEPMPIKEAPPAKQPDSTKSAEAPPEGPVADAKAADIKPA 286 Query: 167 INKEENYFLPPLSK--EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 E P + + L L +I+ + L V T G+ Sbjct: 287 PKAEAPPSKEPAAAIPAEGAKSAETAALAALKDEIAKAVPSLPMGAPAPRVEVRRTGEGV 346 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDN 284 LISI D+ N MF S+ P P+ + L++I ++L + +RGHTDA PFR+ DN Sbjct: 347 LISITDEINFSMFGIGSAEPTPKVVKALERIAKILNTRPGRVVVRGHTDARPFRSETYDN 406 Query: 285 WRLS-LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 WRLS R + + S R S S + +IA+DP + NRRI+IL+ Sbjct: 407 WRLSRPGRRWP--PTCWCAAASTRRGSSASKLCRPQPRIAADPKAAENRRIEILL 459 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 12/249 (4%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E+ III K+ + ++ G+WKI ADFMT +MA FLVMW+IN+T + K+ I +YF Sbjct: 3 EHAHEIIIIKRHGDHEDGHHGGAWKIALADFMTAMMALFLVMWLINSTSKEQKQTIAEYF 62 Query: 70 NPFGKNLMT-ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 NP +T KG+ D QN P + + + G+ + + L Sbjct: 63 NPVKLAEVTHDRKGVNDPQNTPNDPAPSGKGKGDGGSAEGSGKADAAGAPGSRARESALF 122 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + +E S L + F P + L +R Sbjct: 123 QDPYAVLAKLAAEADAAGPEAASADANPLEVGQPGVAGGETGRDPFDPLYWQVAALPRQR 182 Query: 189 KKRLQDL-----------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 L + T + A K E+ R S+ D Sbjct: 183 TDNPGALDTVAAAPSEARLDARARTGAPGRAKEATKDASKESARDVARQSLNDAMRQAGM 242 Query: 238 DKSSSIPLP 246 +S+ P+P Sbjct: 243 KLASAEPMP 251 >gi|218778865|ref|YP_002430183.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760249|gb|ACL02715.1| OmpA/MotB domain-containing protein [Desulfatibacillum alkenivorans AK-01] Length = 259 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 111/323 (34%), Gaps = 72/323 (22%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + + W + +AD +T+LM FF+++ +++ D + + F L + Sbjct: 3 KQPKEIESPDTTMWMVTFADLVTLLMTFFVLLLTMSSMDTKALQTMFTLFAGASGPLDFS 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G + D +T +D Sbjct: 63 PYG-------------KVSPMQGDADMTPGPLDGMS------------------------ 85 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 D I +Y P + K L ++ + ++ L ++ Sbjct: 86 ---------------PDNVDMLTTLTEILDNSDYIKEPEAILKRLTVRSRDVVKQLTER- 129 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + G++++ T MFD SS PE +L + +VL Sbjct: 130 -----------YTDQIYVNEDERGVVLTF---DETVMFDPGSSRIRPEIYPLLDVLAQVL 175 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAH 317 + + I GH+D++P ++ NW LSL RA + + +SEDR+ + G + Sbjct: 176 KAVSGRVLIIGHSDSTPMHSVQYDSNWDLSLSRALNVLYYFTTEHDLSEDRLG-VGGMGN 234 Query: 318 HRLKIASDPMNSA--NRRIDILV 338 + ++ NRR++I++ Sbjct: 235 TKPIASNKTQAGRDKNRRVEIVI 257 >gi|153956379|ref|YP_001397144.1| hypothetical protein CKL_3788 [Clostridium kluyveri DSM 555] gi|219856692|ref|YP_002473814.1| hypothetical protein CKR_3349 [Clostridium kluyveri NBRC 12016] gi|146349237|gb|EDK35773.1| MotB [Clostridium kluyveri DSM 555] gi|219570416|dbj|BAH08400.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 254 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 16/206 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + SL GK + S D + P ++ ++K+L +L ++ Sbjct: 45 KQVAESLKMSMGGGKSVIGSDDTSSIKET-----VDPEETQQTDTDDQEKKLSELKSEVD 99 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L + V G+++S+ D +FD + PE L +IG++L Sbjct: 100 KYLQN---SEMSGSVSTSINERGLIVSMNDS---LLFDTGKADIKPEFQQKLVEIGKILN 153 Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318 + I GHTD P N NW+LS DRA + + L+K +G+ +++S I G+ + Sbjct: 154 QLGNYMRIEGHTDNIPISNNQYSSNWKLSCDRASNVTEFLIKSAGIEPEKLSAI-GYGEY 212 Query: 319 RLK--IASDPMNSANRRIDILVEDRQ 342 R ++D + NRR+DI++ + + Sbjct: 213 RPVGDNSTDEGKAKNRRVDIVILNSK 238 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 14/132 (10%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K N W + Y+D +T+LM FF+VM+ ++ K + + M Sbjct: 2 KKKKKHAEENTERWLLTYSDLITLLMIFFVVMYSMSNISASKYKQVAESLK----MSMGG 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 K + + SI E + +KK + YL NS+ Sbjct: 58 GKSVIGSDDT----------SSIKETVDPEETQQTDTDDQEKKLSELKSEVDKYLQNSEM 107 Query: 140 SEHCKNSLTRDS 151 S S+ Sbjct: 108 SGSVSTSINERG 119 >gi|226310457|ref|YP_002770351.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599] gi|226093405|dbj|BAH41847.1| chemotaxis MotB protein [Brevibacillus brevis NBRC 100599] Length = 269 Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 115/327 (35%), Gaps = 77/327 (23%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 + K + SW I YAD +T+L+A F+V++ + D + + F + Sbjct: 4 RPKRHAHHEEHMDESWLIPYADLLTLLLALFIVLFASSEMDAKKFDQMVRSF----SVAI 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+ + +P + Sbjct: 60 NGGTGVMNYPSP-----------------------------------------VPLDPQL 78 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 QQ K + + +K ++ + + + K + L+ L Sbjct: 79 QQQTLHKGAQEAEKQKTEEEKRLEEAVR---------------------KETEDLKKLQT 117 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ + + + + + T G+LI+I+D +FD + PE + ++ Sbjct: 118 KLDGYIQQ---NKLQDKLQTKLTDEGLLITILDN---ALFDSGKADLKPEARKLASEMAG 171 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 +L + +++ GHTD P R NW LS R+ + +VL+++ + + S +G Sbjct: 172 MLVPHPKKVTVTGHTDNVPIRRAEFPSNWDLSAKRSVNFLKVLLENKNLDPTKFSA-TGL 230 Query: 316 AHHRLKIAS--DPMNSANRRIDILVED 340 + + D + NRR+++ + Sbjct: 231 GEYHPVAPNTTDEGRAKNRRVEVAILR 257 >gi|260775707|ref|ZP_05884603.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] gi|260608123|gb|EEX34292.1| Flagellar motor rotation protein MotB [Vibrio coralliilyticus ATCC BAA-450] Length = 294 Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 108/326 (33%), Gaps = 61/326 (18%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81 + P W +AD M++LM FF+++ + D K I Sbjct: 7 KVTCPPPGAPKWLSTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSM------------ 54 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 + + I + + + R E SE Sbjct: 55 ---------------EYAFGVQHQIKVVDIPKGTSVIATEFRPGRPEPTPLNFIMQHTSE 99 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 K L DL + + E + + + LA I + Sbjct: 100 LTKPHL--------DLQPGEERQGGGKGHEEA-------------ESNEANKALAAIIQA 138 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 V + +V E ++I I R MF + S+ P +++++ +++ Sbjct: 139 AFKREVDEGMVD---VEDLGQELVIRI---REKGMFPQGSAFLQPAFRPLIRQLADLIKD 192 Query: 262 STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHR 319 I I GHT + F + R +W LS RA S + K G R+ I G++ H+ Sbjct: 193 VPGQIRIAGHTSSMTFDSELYRSSWDLSALRAASVVLEMEKVPGFDSHRV-AIQGWSEHK 251 Query: 320 LKIASD-PMNSA-NRRIDILVEDRQG 343 + P + +RR++I + RQG Sbjct: 252 PLSSEQYPNSVGSSRRVEISL--RQG 275 >gi|296188354|ref|ZP_06856746.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7] gi|296047480|gb|EFG86922.1| putative chemotaxis protein MotB [Clostridium carboxidivorans P7] Length = 277 Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 10/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S K ++ S+ + + N S + +++DL K Sbjct: 35 AMSNVDKAKFSQLSQSMSIAMGGGKIMQGNENSPNISNSSPSGNSSDGKTEESKMEDLKK 94 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ S L + + V E G+++S+ D F+ + + + L +IG+ Sbjct: 95 KVDSYLQ---KNGMQNSVTTEVDERGLVVSLRDT---LFFETGKAEVIAASQGKLVEIGK 148 Query: 258 VLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L + I GHTD P N NW+LS RA + ++L+ +GV ++S ++ + Sbjct: 149 ILNQLDNTMRIEGHTDNVPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKLSSVA-YG 207 Query: 317 HHRLK--IASDPMNSANRRIDILVEDRQ 342 +R +++ + NRR+DI+V + Sbjct: 208 EYRPVLDNSTEDGRARNRRVDIIVVSNK 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + N W + Y+DFMT+LM F+V++ ++ D + Q M Sbjct: 2 KKKKQEEHENSERWLLSYSDFMTLLMILFVVLYAMSNVDKAKFSQLSQSM----SIAMGG 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 K + +N P S+ + S D ++ ++ + Q ++N++ + + Sbjct: 58 GKIMQGNENSPNISNSSPSGNSSDGKTEESKMEDLKKKVDSYLQKNGMQNSVTTEVDER 116 >gi|87120689|ref|ZP_01076582.1| flagellar motor protein [Marinomonas sp. MED121] gi|86163917|gb|EAQ65189.1| flagellar motor protein [Marinomonas sp. MED121] Length = 292 Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 13/252 (5%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + + + + + I S+ Q+ + E + E +N+L Sbjct: 8 QLAGSMREAFGVQKQIEAKSIPTGTSIIAQEFSPGKPEPTPINEVRQKVDERPENTLEVL 67 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + G+D + + + S + K+ K+ ++ AK+ISS L ++ Sbjct: 68 CKPGEDDLNEKEGVGAQGE----AYVDKSTADLEREKQVKQTEEDAKQISSVLREEISKG 123 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 V ET I I + + F+ S+ + I ++ I +VL I++ G Sbjct: 124 ---TVEVETQERTITIRL---KEKGSFESGSAELNFDFIPIIDMIRDVLIGIQGTIAVEG 177 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 HTD P + NW+LS RA S + L +G E + ++G+A R +D Sbjct: 178 HTDNIPVNSGRFGSNWQLSSARAISVAEELFATGQLEQKRFSVTGYADTRPLAPNDTFFN 237 Query: 328 NSANRRIDILVE 339 ++NRR++++++ Sbjct: 238 RASNRRVELIIK 249 >gi|329895993|ref|ZP_08271251.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] gi|328922074|gb|EGG29437.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] Length = 354 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 57/359 (15%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKNLMTASKGIFDE 86 +AD T+LMAFF+++ + K + N S + + Sbjct: 1 MATFADMATLLMAFFVLILSFAEMNVPKFKDVSGSMNDSFGVQRKVPVVEPPLSDSVIAK 60 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 Q + + + ++ + + T K L ++I + + E + Sbjct: 61 QFSQAKVDTTALSVIQEQTTDELQPEDAELRTTTKPSDATLGSDIEKVRAALSEEIARGL 120 Query: 147 LTRDSE--------KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA-- 196 + E K E+S + +S +A + + + ++ Sbjct: 121 VEVVQENEKISVITKAASNEGLESGEESTQRGRQLDQDTISLFAKVADAQTQVVSEIEIR 180 Query: 197 ------------------------------KKISSTLSGLVADNIVKGVLFETTRTGILI 226 ++I L+ ++ ++ V E + I I Sbjct: 181 DSSPSDSAESAQSQANAPAPPEDDIGDSDLEQIRQNLAPEISRSL---VNVEMDQDQIKI 237 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIARDN 284 ++ DQ F S+ PE + +L ++G+ ++ + V+++ GHTD+ P F + N Sbjct: 238 TLADQ---GAFVSGSADLRPEFLQLLNRVGDSISDTDGVVTVSGHTDSIPMAFSMRFKSN 294 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 W LS R+ S L+ G D + G+A +D + NRRI+I+++ + Sbjct: 295 WDLSAARSASVADYLITQGYLGDIEVSVQGYADTVPIATNDTAEGRAKNRRIEIMIDKK 353 >gi|312134920|ref|YP_004002258.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774971|gb|ADQ04458.1| OmpA/MotB domain protein [Caldicellulosiruptor owensensis OL] Length = 257 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 11/160 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 R+ ++L I + GL+ ++ ++G L G+ I + D +F+ S+ Sbjct: 93 NRQMTEEELINDIQKQVLGLIKEHGIEGKALVIQEERGLSILLKD----VLFNTGSAKLT 148 Query: 246 PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKS 302 P+ V+ +I ++L I I GHTD P N NW LS RA S Q +L S Sbjct: 149 PQAKEVVHEIAKILEKVPDNNIRIEGHTDNVPIHNKYFYSNWELSTARATSVLQEILRVS 208 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 V +R + G+ +R ++ + NRR+ I++ Sbjct: 209 KVRPERF-SVVGYGEYRPIASNKTPEGRALNRRVTIVILR 247 >gi|261409603|ref|YP_003245844.1| OmpA/MotB domain-containing protein [Paenibacillus sp. Y412MC10] gi|261286066|gb|ACX68037.1| OmpA/MotB domain protein [Paenibacillus sp. Y412MC10] Length = 271 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 101/320 (31%), Gaps = 70/320 (21%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 W I YAD +T+L+ FF+VM+ ++ D + K + Q Sbjct: 15 EGEQRDRWMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQAT------------- 61 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + G + + + + + Sbjct: 62 ---------------------------FQSGDSILEMGSGITGTADTENHKNPPPKPAAD 94 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 D + G++ +L +EE LA + Sbjct: 95 EEGEDKDNGQEPLTERELAFRAQEEE-----------------------LANFMGLIQQY 131 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 + + + + + GI I++ D +FD + P VL K+ + Sbjct: 132 VKDNQLEEDIFISDEPQGIAITLSD---RFLFDVGKAELKPGAAPVLGKLASLFGDLNTT 188 Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 +SI GHTD P + +DNW LS RA S + ++ + + +G+A R Sbjct: 189 VSIEGHTDNVPIGRYSSYKDNWELSGARAMSVLRFFLEHSKLDPAGFQYAGYADTRPAAD 248 Query: 324 SDPMN--SANRRIDILVEDR 341 + NRR++I V + Sbjct: 249 NATAEGKQKNRRVEITVLRQ 268 >gi|68164502|gb|AAY87231.1| predicted flagellar motor protein [uncultured bacterium BAC17H8] Length = 385 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 66/367 (17%), Positives = 118/367 (32%), Gaps = 52/367 (14%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN----LM 77 P +W +AD T+LMAFF+++ + K I N FG ++ Sbjct: 18 PKCPPVGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLKNAFGVQKIVPIV 77 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 KG S + + + T + K Q + + + Sbjct: 78 EQPKGTTVLSLNFSPSPSPSVTQDMTQQTTDVTKPDLEVKQRDKDQDGGESDGAEEIVKA 137 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL-- 195 + + + + + T E + N L K Q++ Sbjct: 138 LEDAIARGDIEVEVLGENVVVNFTPTEAKDEELPNLLQETLEAIDKAKKAAGKAEQEVLF 197 Query: 196 --------------------------------AKKISSTLSGLVADNIVKGVLFETTRTG 223 ++ +S +A++ +K L + G Sbjct: 198 GGLEQKLAQLAAAADAAIQSGKAASAEAKAEAEQQKASNEKAEIAEDDLKVALRQEIGQG 257 Query: 224 ILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 ++ II F S+ ++++I V + I++ GHTD P Sbjct: 258 LVAVDRQEDKVIITVGAGGAFPSGSAELTEAARKIMEEIAGVNEAGSGEITVSGHTDDVP 317 Query: 277 --FRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA--N 331 F + RDNW L+ RA S Q L +G V R+ +S F + ++D N Sbjct: 318 LIFGSQFRDNWDLAAARAASVVQALEDTGKVPAGRMQAVS-FGESQPVESNDTARGRATN 376 Query: 332 RRIDILV 338 RRI+I + Sbjct: 377 RRIEIEI 383 >gi|325525470|gb|EGD03283.1| flagellar motor protein MotB [Burkholderia sp. TJI49] Length = 201 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 49/249 (19%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ D+ I++K+ VA ++ G+WK+ YADFMT +MAFFL+MW+++A K I + Sbjct: 2 SKSKDRAIVVKR-VAPQKKGHHGGAWKLAYADFMTAMMAFFLLMWLLSAVTPVQLKGIAE 60 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 YFN K + S ++ D SI ++ + G+ + L Sbjct: 61 YFNTPLKAALFGS------------GDRSSQDSSIINGGGRDLSSVDAGTLRRTDGTTPL 108 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + K D L+ ++ + E L L + + A++ Sbjct: 109 AERV--------------------AKPVDEAAQAQLQGALERREQARLHDLQIKLMAAIE 148 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L+ ++I ++T G+ I I+D + PMF SS P Sbjct: 149 ANPTLRQFKQQI----------------RIDSTLLGLRIEIVDTQKRPMFAMSSDRVEPY 192 Query: 248 TIVVLQKIG 256 +L++IG Sbjct: 193 MRDILREIG 201 >gi|146296538|ref|YP_001180309.1| OmpA/MotB domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410114|gb|ABP67118.1| OmpA/MotB domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 257 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 11/160 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 R+ +++ I + L+ ++ ++G VL G+ I + D +F+ S+ Sbjct: 93 NRQMTEEEIINDIQKQVLSLIKEHGIEGKVLVIQEERGLSILLKD----VLFNSGSAQLT 148 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKS 302 P+ V+ +I ++L I I GHTD P N NW LS RA + Q +L S Sbjct: 149 PQAKEVVHEIAKILEKVPNNNIRIEGHTDNVPIHNKYFYSNWELSTARATTVLQEILRVS 208 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 V +R + G+ +R ++ + NRR+ I++ Sbjct: 209 KVKPERF-SVVGYGEYRPIASNKTPQGRALNRRVTIVILR 247 >gi|115526365|ref|YP_783276.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520312|gb|ABJ08296.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 270 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 1/180 (0%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFET 219 L+++I+ + MK ++ + + L + + K ++F+ Sbjct: 79 QPLDRTIDDSAAIEHGQDAAIATKQMKAEREFATASASLRRALQDIPELTEVTKNIIFQE 138 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T + + I+D + PMF + S++P T V+++K+ L + ISI GHT ++ Sbjct: 139 TSQSLALEIVDHFSRPMFRQGSAVPYDWTRVLIEKLAVPLKATALRISIVGHTSSTETAR 198 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 RD + LS+ RA + ++L + G+ ++ ++G + DP +ANRR+ I + Sbjct: 199 GDRDVFELSVLRADAVRRILKQQGLPTSQLFVVAGKGDREPLFSDDPTMAANRRVTIALM 258 >gi|257095366|ref|YP_003169007.1| flagellar motor protein MotD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047890|gb|ACV37078.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 276 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + K++++++++AK+I ++ L+ V+ + T G+ I I D +F Sbjct: 86 AQEAVKQKQREKMRNVAKEILEVMAPLIEQGKVRVL---ETSRGVTIEINDS---ILFSP 139 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298 ++ P+ I +Q + EVL + I+I GHTD P +N NW LS RA + ++ Sbjct: 140 GQAVLQPQLIKAMQSVAEVLVAADFPITIEGHTDNVPIKNTQFPSNWELSAVRATTVLRL 199 Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 +G++ R++ I G+A R + + NRR+ IL++ Sbjct: 200 FADAGIAAGRLTAI-GYADTRPVEPNLLADGRARNRRVSILIDS 242 >gi|262172094|ref|ZP_06039772.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] gi|261893170|gb|EEY39156.1| Flagellar motor rotation protein MotB [Vibrio mimicus MB-451] Length = 279 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 105/295 (35%), Gaps = 47/295 (15%) Query: 57 TDDDTKKAIEQYF-------NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE--HIT 107 D K I N + I ++ P R ID+ + + IT Sbjct: 1 MDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDIT 60 Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 + ++D + G +++ QR + +++ S + + ++ + Sbjct: 61 QQTLDFQEGDSDRAGGNQRDSGKLTGGQSAESSTQDNQNTQSEMQQQQ------------ 108 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 A ++++ +A+ I LS + ++ E I I Sbjct: 109 -----------------AKAMSEQMETVAESIKKALSREIEQGAIE---VENLGQQIDIR 148 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWR 286 I R F + S+ P+ ++++I +++ + + GHTD + R NW Sbjct: 149 I---REKGAFPEGSAFLQPKFRPLVRQIADLVKDIPGKVRVTGHTDNQKLDSELYRSNWD 205 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 LS RA S Q + K + + ++ G A + +D NRR++I + Sbjct: 206 LSAQRAVSVAQEMEKVKGFDHQRLQVRGMADTQPIGPNDTEAQRALNRRVEISIL 260 >gi|323706054|ref|ZP_08117624.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534668|gb|EGB24449.1| OmpA/MotB domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 241 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 199 ISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I+S L L+ N+ V ++ G +IS+ D +FD S+ P+ L KIG Sbjct: 89 IASQLDKLIKQYNLQNMVTYKVDERGFVISLNDT---LLFDTGSADVKPDQKETLIKIGN 145 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 +L I + G+TD P N NW LS+ RA + ++L+ + +IS + G+ Sbjct: 146 ILKSMPNYIRVEGYTDNVPINNNQFHSNWELSVIRATNVVEILVNDVKMDPAKISAV-GY 204 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 +R + +D NRR+DI++ + Sbjct: 205 GEYRPIVPNDSDKNRQLNRRVDIVIMN 231 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + + + N W + Y+D +T+LM FF+V++ I+ + + I Sbjct: 1 MIRHEEDEGKKENSERWLLTYSDMITLLMIFFIVLYTISTVNSQKFQQIAASL----GKT 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 + + +Q+ S + I + NS+ ++ ++ Q + Sbjct: 57 FDGTNYVIGQQS--GNSILDSIKTTGTNGTNDNSIASQLDKLIKQYNLQNM 105 >gi|225181601|ref|ZP_03735042.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1] gi|225167709|gb|EEG76519.1| OmpA/MotB domain protein [Dethiobacter alkaliphilus AHT 1] Length = 227 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 S+ +++ + + +D+ S L + + + G+++ I D + Sbjct: 52 DPSRGEMIELAVDHKFEDVLMTYLEVKSHLQEEGLANIIDVRIEDRGVVLEIQD---RLL 108 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295 FD + PE +L K+ +LA+ I + GHTD P + NW LS+DRA Sbjct: 109 FDTGRAEIRPEARELLVKVAGILANVPNQIIVEGHTDNVPIQTAQYPSNWELSVDRAVRV 168 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + L + + +R +G+ + +++ + NRR++I++ Sbjct: 169 VRYLSERQDIDPERFLA-TGYGEFQPVASNETVQGRAKNRRVNIVI 213 >gi|77463800|ref|YP_353304.1| flagellar MotB protein [Rhodobacter sphaeroides 2.4.1] gi|77388218|gb|ABA79403.1| flagellar MotB protein [Rhodobacter sphaeroides 2.4.1] Length = 366 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78 P +W +AD T LMAFF+++ D+ + + T Sbjct: 24 PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130 + + D P + D D +++ D + K Q + E Sbjct: 84 SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178 + + + SL R + L + + + P Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTAQPRPEPKAGPAGPGEGTGAPPGP 203 Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + A+++ R + A ++ + L VA+ +VK E T + +S+ Sbjct: 204 PAGGDTGAALRQSVRAELDALRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F S P+ V+ +I E + I++ GHTD P A RDN L+ RA S Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317 Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L+ SG V RI+ +S G A++ + NRRI+I + Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362 >gi|126462636|ref|YP_001043750.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104300|gb|ABN76978.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 366 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78 P +W +AD T LMAFF+++ D+ + + T Sbjct: 24 PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130 + + D P + D D +++ D + K Q + E Sbjct: 84 SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178 + + + SL R + L + + + P Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTAQPRPEPKAGPAGPGEGTGAPPGP 203 Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + A+++ R + A ++ + L VA+ +VK E T + +S+ Sbjct: 204 PVGGDTGAALRQSVRAELDALRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F S P+ V+ +I E + I++ GHTD P A RDN L+ RA S Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317 Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L+ SG V RI+ +S G A++ + NRRI+I + Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362 >gi|120553254|ref|YP_957605.1| flagellar motor protein MotB [Marinobacter aquaeolei VT8] gi|120323103|gb|ABM17418.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 305 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 65/321 (20%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 ++ + +W + +AD M++LM FF+++ + D K I + Sbjct: 5 PEEEKPGIPAWVVTFADLMSLLMCFFVLLLSFSEIDAQKFKQIAGELS------------ 52 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 G + + + + Sbjct: 53 ------------------------------KAFGVQREVPALEIPQGTSPIFDKFSPAPP 82 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + D+ KS EK + ++++ +I Sbjct: 83 EPTVVNEVKQTTTDVQPEIQTLKSPE------------EKAIEETIQEQMDANMARILEV 130 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + D + I II F S+ E +L + EVLA Sbjct: 131 LEPAILDG-----RINVSEDQRRI-IIRIEEKGSFASGSAQLTWEFEGLLMDMAEVLADM 184 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLS-LDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 ++I GHTD P R NW LS A A +L + V+ DRI +++G A Sbjct: 185 PGDLAIEGHTDNVPIRTERFYSNWDLSAARAAAVANVLLAREQVTPDRI-RVTGLADTEP 243 Query: 321 KIASD--PMNSANRRIDILVE 339 ++ + + NRR++I+++ Sbjct: 244 RVPNTSPENRAKNRRVEIVID 264 >gi|221639652|ref|YP_002525914.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|221160433|gb|ACM01413.1| OmpA/MotB domain protein [Rhodobacter sphaeroides KD131] Length = 366 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78 P +W +AD T LMAFF+++ D+ + + T Sbjct: 24 PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130 + + D P + D D +++ D + K Q + E Sbjct: 84 SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178 + + + SL R + L + + + P Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTSQPRPEPKAGPAGPGEGTGAPPGP 203 Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + A+++ R + A ++ + L VA+ +VK E T + +S+ Sbjct: 204 PVGGDTGAALRQSVRAELDAIRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F S P+ V+ +I E + I++ GHTD P A RDN L+ RA S Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317 Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L+ SG V RI+ +S G A++ + NRRI+I + Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362 >gi|332558675|ref|ZP_08412997.1| MotB [Rhodobacter sphaeroides WS8N] gi|332276387|gb|EGJ21702.1| MotB [Rhodobacter sphaeroides WS8N] Length = 366 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 35/345 (10%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78 P +W +AD T LMAFF+++ D+ + + T Sbjct: 24 PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130 + + D P + D D +++ D + K Q + E Sbjct: 84 SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL------------ 178 + + + SL R + L + + + P Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTSQPRPEPKAGPAGPGEGTGAPPGP 203 Query: 179 --SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + A+++ R + A ++ + L VA+ +VK E T + +S+ Sbjct: 204 PVGGDTGAALRQSVRAELDALRLRNALDREVAEGLVK---VEQTDGKVFVSL---GAGGS 257 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F S P+ V+ +I E + I++ GHTD P A RDN L+ RA S Sbjct: 258 FPSGSDDLTPDARAVMARIAEATRNPERTITVTGHTDNVPVSGGAFRDNIALAAGRAASV 317 Query: 296 YQVLMKSG-VSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L+ SG V RI+ +S G A++ + NRRI+I + Sbjct: 318 VRELVASGSVDPGRITAVSRGEFDPVADNATEEGRAQNRRIEIEI 362 >gi|320106352|ref|YP_004181942.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924873|gb|ADV81948.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4] Length = 284 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 106/325 (32%), Gaps = 65/325 (20%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + P+ W + YADF+T+L AFF+V++ Sbjct: 2 RGKKKHAPHGHERWLVSYADFITLLFAFFVVLFA-------------------------- 35 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + Q + ++I + + D ++ + + Sbjct: 36 -------GSRGDAKKQQLLAVAIQTAFAQGAFDAH----SKTPALAPSAGAMGKPTPIAM 84 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E L + ++N LPPL + KR Sbjct: 85 PTPMTPEAAARKEAADKKRIYDALAQMAVPQKNQNLPPLGAKPPSPEKRGTA-------- 136 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + V F + G+++S+ D F+ S+ + I VL++I L Sbjct: 137 ------------ISAVSFRSEPEGLVLSLQD---AGFFNSGSAALRADAIPVLERIAASL 181 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + GHTD NW LS RA + +VL+ + ++G+A Sbjct: 182 PMGP--LRVEGHTDNVAIHTALYASNWELSTARANAIARVLLARSLVNPASLAVAGYAEF 239 Query: 319 RLK--IASDPMNSANRRIDILVEDR 341 +++ + NRR+DI++ + Sbjct: 240 HPISSNSTEEGRAKNRRVDIVLLKQ 264 >gi|152976910|ref|YP_001376427.1| flagellar motor protein MotB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025662|gb|ABS23432.1| OmpA/MotB domain protein [Bacillus cytotoxicus NVH 391-98] Length = 265 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 9/201 (4%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D E S + E + + EK A +++ + +L S + Sbjct: 66 TGNKEFLSDQKPKKKEELSTDSLEAENIKKQATEKAEAEVKQREMNELKAVQKSIDQYIE 125 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++I+I++ +FD + PE++ + ++ +L + + I Sbjct: 126 ERQLSSSFKTKLTEQGLMITILEN---VLFDSGKADVKPESLNIANEMSHLLLSAAPREI 182 Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + + S +G+ +R ++ Sbjct: 183 TVSGHTDNVPITNSQFSSNWELSTQRAVNFMQVLLQNKQLDPAKFSA-TGYGEYRPATSN 241 Query: 325 DPMN--SANRRIDILVEDRQG 343 D + NRR+++ + QG Sbjct: 242 DTSEGKAKNRRVEVFILPLQG 262 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F + + Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMALSFRSELAGGTGNKEFLS 73 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D++ P++ + D E+I K + + Q++ + ++ + Sbjct: 74 DQK--PKKKEELSTDSLEAENIKKQATEKAEAEVKQREMNELKAVQKSIDQYIEERQLSS 131 Query: 145 NSLTRDSEKG 154 + T+ +E+G Sbjct: 132 SFKTKLTEQG 141 >gi|291280094|ref|YP_003496929.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1] gi|290754796|dbj|BAI81173.1| flagellar motor protein MotB [Deferribacter desulfuricans SSM1] Length = 249 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 10/173 (5%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 ++ + + K KK + + + + + N+ + T GI + Sbjct: 61 AGRKSEMGKEEILSKMDFVDKVKKSQEQMLSGLKNYIEQA---NLSSQISVVKTDKGISV 117 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 I+D +F S+ LP I +L+K+ V+ + I + GHTD P NW Sbjct: 118 RIMDS---VLFAPGSAEILPSAIPILEKLAAVMRDTPYNILVEGHTDDIPISTPKYPSNW 174 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 LS RA + + L+ GV +++S +G+A + + + + NRR++I Sbjct: 175 ELSTARAVAVVKFLISRGVKPEKLSA-AGYAQYHPLVPNITPENRAKNRRVEI 226 >gi|89100104|ref|ZP_01172973.1| flagellar motor protein [Bacillus sp. NRRL B-14911] gi|89085194|gb|EAR64326.1| flagellar motor protein [Bacillus sp. NRRL B-14911] Length = 229 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + ++RL++L +++ L + + ++ T G+++ + +Q +F+ + + Sbjct: 71 QEEERLENLLQEVEGYLE---KNGLEDVIVANRTERGVVLVLQEQ---VLFESGEAEIID 124 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVS 305 L K+G +L ++ + GHTD P NW LS RA S + L +GV Sbjct: 125 RNSGFLDKVGSLLVGMPNLVKVEGHTDNRPIATYRYPSNWELSAARASSVIRYLAGTGVD 184 Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 R + G+ R + +D NRR+++++ D + Sbjct: 185 SKRFIAV-GYGDTRPLVPNDSAENLEKNRRVEVIISDPR 222 Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 + ++D +T+++ FF++++ ++ D KA+ + F K M I +NP E Sbjct: 1 MVTFSDLVTLILVFFILLFSMSQIDIVKFKAVSESFQ--DKQFMDFYPSIIPFENPSEND 58 Query: 94 S----QNKIDLSIDEHITKNSVDLKIGSTNQKK 122 Q +E +N + G + Sbjct: 59 KNVVNQGPDSDRQEEERLENLLQEVEGYLEKNG 91 >gi|229138428|ref|ZP_04267017.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] gi|228644965|gb|EEL01208.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] Length = 213 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK KKR+ DL KK+ + Sbjct: 20 ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKKLKA- 78 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ K+ Sbjct: 79 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSV 132 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 133 PNSIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 191 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 192 VVPNDSPQNWEKNRRVVIYIKE 213 >gi|256833230|ref|YP_003161957.1| OmpA/MotB domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686761|gb|ACV09654.1| OmpA/MotB domain protein [Jonesia denitrificans DSM 20603] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 112/327 (34%), Gaps = 55/327 (16%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 +K ++ N W + YAD +TVL+ F+V++ ++ D + + Sbjct: 8 RKKGHEEEHANHERWLVSYADMLTVLVGLFIVLYAMSQVDQAKFEQLAA----------- 56 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 S+ + G + + + Sbjct: 57 -------------------------------SLSVSFGGSGSSILSDGSSIIDANTAITP 85 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 S + + + + D ++ + EE P K+ A + LQ LA + Sbjct: 86 TSVEPPDEFLAAALRNDNSGSDEDSGQAGDAEEEAIDP---KDMAAAQAEYENLQSLADR 142 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + L + V + G+++ ++ F ++ T V+ + Sbjct: 143 IDAALR---KRGLEGSVEYRINERGLIVGLVSDE--LFFQADTARLTKTTERVVDTTARI 197 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAH 317 L +SI GH ++ N + NW LS DRA + + K +S RI+ + GF Sbjct: 198 LRELDNELSIEGHANSLQSVN-YKSNWELSSDRATQVLRRYVEKGKISGTRIAAV-GFGD 255 Query: 318 HRLKIASDPMNS--ANRRIDILVEDRQ 342 R +D NRR+DI++ Q Sbjct: 256 TRPLADNDTKRGLKINRRVDIVILSSQ 282 >gi|300853354|ref|YP_003778338.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] gi|300433469|gb|ADK13236.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] Length = 283 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 12/207 (5%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKI 199 SL+ GK + + + + + P S + +K + +L+ L K++ Sbjct: 47 NKLSQSLSIAMGGGKTIIGADNTSSVKDSVKTVDKPTESDQSEEQVKMEANKLKQLKKQV 106 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S L+ A+ + + V + G+++S+ NT FD + PE L IG+++ Sbjct: 107 DSYLA---ANGLSQSVSSQIDERGLVVSLS---NTLFFDTGKAEIKPEIQNTLMGIGKMI 160 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 I + GHTD P N NW+LS RA + Q L G+ ++++ + G+ Sbjct: 161 NQMGNSIRVEGHTDNVPISNNEYASNWQLSCARAANVTQFLQNKVGIKPEKLTSV-GYGE 219 Query: 318 HRLK--IASDPMNSANRRIDILVEDRQ 342 +R ++D + NRR+DI++E + Sbjct: 220 YRSVTDNSTDANRAKNRRVDIIIESNK 246 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +KKK D + W + YADFMT+LM FF+VM+ ++ D + Q Sbjct: 1 MKKKNKKPDEGPSAERWMLSYADFMTLLMIFFVVMYAMSQVDQTKYNKLSQSL----SIA 56 Query: 77 MTASKGIFDEQNPPE-RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 M K I N + S +D + ++ V ++ Q K+ Sbjct: 57 MGGGKTIIGADNTSSVKDSVKTVDKPTESDQSEEQVKMEANKLKQLKKQ 105 >gi|229160692|ref|ZP_04288684.1| OmpA/MotB domain protein [Bacillus cereus R309803] gi|228622707|gb|EEK79541.1| OmpA/MotB domain protein [Bacillus cereus R309803] Length = 226 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ DL KK+ + Sbjct: 33 ATSKQDTVKLSKMLEKFSDAEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKKLKA- 91 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ I I+D +FD + PE ++ ++ Sbjct: 92 ---YVDNNGISQVNVYREDTGVSIVIVDN---LIFDTGDASVKPEAKEIISQLVGFFQSV 145 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 146 PNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYHVDDKRLAAV-GYADTKP 204 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 205 VVPNDSPQNWEKNRRVVIYIKE 226 >gi|47566111|ref|ZP_00237149.1| sodium-driven polar flagellar protein PomB, putative [Bacillus cereus G9241] gi|47557028|gb|EAL15358.1| sodium-driven polar flagellar protein PomB, putative [Bacillus cereus G9241] Length = 225 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ DL KK+ + Sbjct: 32 ATSKQDTVKLSKMLEKFSDAEQVDAKVMGNTIPDISHEKNDEKMASKKRMDDLYKKLKA- 90 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ K+ Sbjct: 91 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSV 144 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD+ P N NW LS RA + L++ ED+ G+A + Sbjct: 145 PNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPV 204 Query: 322 IASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 205 VPNDSPQNWEKNRRVVIYIKE 225 >gi|195953009|ref|YP_002121299.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932621|gb|ACG57321.1| OmpA/MotB domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 271 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + LP + KI ++ + + K+I L + + GI + + D Sbjct: 67 SQILPQPALPKIQLTQKGQYINMQLKRIEQMLK---KQGLEGKFKVKLVPQGIKLILQDT 123 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290 +F S+ P+ +L I ++++ I I G TD +P + NW LS D Sbjct: 124 ---VLFKSGSADIDPKYYSLLDSIYKIISSLPNPIEIDGFTDNTPIHTLTFPSNWELSTD 180 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 RA S + + G +I KI+G+ + + + + NRR++I + + +G Sbjct: 181 RAASVAKYFIFKGFDPSKI-KIAGYGKYHPLVPNTTPQNKAMNRRVEITILNIKG 234 Score = 43.7 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 W I YADF+T+L+A F+ ++ I KAI Y F K + Sbjct: 3 KKHKCPEEASERWAIPYADFLTLLLALFISLYAIMRGS----KAIPIYAEAFAKAM--GM 56 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + + EQ P + I +++++ Q + Q LE Sbjct: 57 RILPFEQTLPSQILPQPALPKIQLTQKGQYINMQLKRIEQMLKKQGLEGK 106 >gi|313200583|ref|YP_004039241.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312439899|gb|ADQ84005.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 313 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 8/214 (3%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + L++S + + + + + +++ + L++ + Sbjct: 42 QGKYEQLTSSLGTAFTGENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRR 101 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ + +A +++ L+ +V + +K G+ + I D +F +S P Sbjct: 102 EREAMTAMANNLANHLAPMVLEGKIK---VMQNNRGVRVDIHDS---LLFAPGASELQPI 155 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 L +I + L + I + GHTD P N NW LS RA S ++L SG+ E Sbjct: 156 ASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAMRASSVVRMLQDSGLDE 215 Query: 307 DRISKISGFAHHRLKIASDP-MNSANRRIDILVE 339 R+S + A L+ S P + NRR+ I++ Sbjct: 216 KRLSAVGFGASQPLEDNSTPLGRARNRRVSIMIL 249 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 4/118 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ +++ +N W + YADF+T+L AFF+VM+ I++ + + + T Sbjct: 2 RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVNQGKYEQLTSSL----GTAFT 57 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 P + I + ++L + Q+++ + + L+N Sbjct: 58 GENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRREREAMTAMANNLAN 115 >gi|253998497|ref|YP_003050560.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4] gi|253985176|gb|ACT50033.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] Length = 313 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 8/214 (3%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + L++S + + + + + +++ + L++ + Sbjct: 42 QGKYEQLTSSLGTAFTGENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRR 101 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ + +A +++ L+ +V + +K G+ + I D +F +S P Sbjct: 102 EREAMTAMANNLANHLAPMVLEGKIK---VMQNNRGVRVDIHDS---LLFAPGASELQPI 155 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 L +I + L + I + GHTD P N NW LS RA S ++L SG+ E Sbjct: 156 ASGPLNEIAQALKANNHAIQVEGHTDNVPIHNDKFYSNWELSAMRASSVVRMLQDSGLDE 215 Query: 307 DRISKISGFAHHRLKIASDP-MNSANRRIDILVE 339 R+S + A L+ S P + NRR+ I++ Sbjct: 216 KRLSAVGFGASQPLEDNSTPLGRARNRRVSIMIL 249 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 4/118 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ +++ +N W + YADF+T+L AFF+VM+ I++ + + + T Sbjct: 2 RRRQVEEDEDNKERWMVSYADFITLLFAFFVVMYAISSVNQGKYEQLTSSL----GTAFT 57 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 P + I + ++L + Q+++ + + L+N Sbjct: 58 GENTPQLNNPPDGNNEHANIKGLYGQPSFIRPLELARRNDKQRREREAMTAMANNLAN 115 >gi|83642951|ref|YP_431386.1| flagellar motor protein [Hahella chejuensis KCTC 2396] gi|83630994|gb|ABC26961.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 275 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 120/330 (36%), Gaps = 67/330 (20%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGK 74 I +K + P +W + +AD MT+L+ FF+++ ++ D + ++I FG Sbjct: 2 IKPRKQSGGLLPVGAPAWIVTFADLMTLLLTFFILLLSFSSLDAEKYRSIAYSMSKAFGV 61 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + +S+G D ++ L Sbjct: 62 AWVPSSQGAPD---------------------------------------------MYPL 76 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + RD + +++E S++ + E Sbjct: 77 GGDITPTVPMEPVIRDKGDAEQPAPQSNVEPSLDLSQEVVSEAAYMEN----------DR 126 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LA ++ S L + D V + G+++S + F S + VL K Sbjct: 127 LASRMISLLENEIEDQAVD---IKFDDKGVVLSFTE---RATFASGSEELKLYMLPVLMK 180 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKI 312 + +VLA I + GHTD P ++ R NW LS RA S L+ G + R+S I Sbjct: 181 VTDVLADCKGDILVTGHTDDRPIDSVKFRSNWDLSAARAVSVVHRLVLDGRLDASRVSAI 240 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVED 340 G A R + +D + NRR++I +E+ Sbjct: 241 -GQAETRPLVPNDTDEHRAQNRRVEIHIEN 269 >gi|217959212|ref|YP_002337760.1| flagellar motor protein MotS [Bacillus cereus AH187] gi|217063689|gb|ACJ77939.1| putative chemotaxis protein MotB [Bacillus cereus AH187] Length = 225 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 13/191 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK KKR+ DL KK+ + V +N + Sbjct: 43 KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKKLKA----YVDNNGIS 98 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ K+ I + GHTD Sbjct: 99 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHTD 155 Query: 274 ASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 + P N NW LS R A + ++ V + R++ + G+A + + +D P N Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|229195941|ref|ZP_04322694.1| OmpA/MotB domain protein [Bacillus cereus m1293] gi|228587500|gb|EEK45565.1| OmpA/MotB domain protein [Bacillus cereus m1293] Length = 213 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ DL KK+ + Sbjct: 20 ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKKLKA- 78 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ K+ Sbjct: 79 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSV 132 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD+ P N NW LS RA + L++ ED+ G+A + Sbjct: 133 PNSIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPV 192 Query: 322 IASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 193 VPNDSPQNWEKNRRVVIYIKE 213 >gi|71906384|ref|YP_283971.1| flagellar motor protein MotD [Dechloromonas aromatica RCB] gi|71846005|gb|AAZ45501.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 257 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++++++++++A I L LVA V+ + T G+ I I D +F + Sbjct: 93 KIEQRQKMKNMAGDIMQALQPLVAQGKVRLL---ETSRGVTIEINDS---ILFPAGQAKL 146 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 +I + I +VLA S I+I GHTD P NW LS RA + ++ G Sbjct: 147 QSASISAMLAIAQVLAASDFPITIEGHTDNVPIATAQFPSNWELSAMRATTVLRLFNDGG 206 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 V +R++ I G+ R + + NRR+ IL++ + Sbjct: 207 VGAERLTAI-GYGETRPLETNTTVEGRARNRRVSILIDSNR 246 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 46/134 (34%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADF+T+L AFF+VM+ I++ ++ K + KN+ G Sbjct: 16 WLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSNSLTNAFKNVTGQPGGQPIAVIQGAP 75 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + D+ + ++ + N + + + E + ++ Sbjct: 76 PIPPRPIAKPDKLPDQKKIEQRQKMKNMAGDIMQALQPLVAQGKVRLLETSRGVTIEIND 135 Query: 153 KGKDLCKSTDLEKS 166 L+ + Sbjct: 136 SILFPAGQAKLQSA 149 >gi|315649793|ref|ZP_07902876.1| OmpA/MotB domain protein [Paenibacillus vortex V453] gi|315274767|gb|EFU38148.1| OmpA/MotB domain protein [Paenibacillus vortex V453] Length = 270 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 57/314 (18%), Positives = 105/314 (33%), Gaps = 73/314 (23%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD +T+L+ FF+VM+ ++ D + K + Q + I + + Sbjct: 22 WMITYADLITLLLIFFVVMYAMSRLDTEKYKLVTQSLQAT----FQSGDSILEMGSGITG 77 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 ++ + ++ + ++T D E Sbjct: 78 TADT---------------------------------------ENHKNPPPQTAVTEDKE 98 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + T+ E + +E + L + I + + + Sbjct: 99 EDNGEAPLTERELAFRAQE------------------EELANFMGLIQQYVK---DNQLE 137 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + GI I++ D +FD + VL K+ + +SI GHT Sbjct: 138 EDIFISDEPQGIAITLSD---RFLFDVGKAELKSGAAPVLGKLASLFGDLNTTVSIEGHT 194 Query: 273 DASPF--RNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 D P + +DNW LS RA S L S + + +G+A R + Sbjct: 195 DNVPIGRHSSYKDNWELSGARAMSVLRFFLEDSKLDPA-GFQYAGYADTRPAADNATPEG 253 Query: 328 NSANRRIDILVEDR 341 NRR++I V + Sbjct: 254 KQKNRRVEITVLRQ 267 >gi|90415361|ref|ZP_01223295.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] gi|90332684|gb|EAS47854.1| flagellar motor protein [marine gamma proteobacterium HTCC2207] Length = 399 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 127/376 (33%), Gaps = 65/376 (17%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKN 75 + SW +AD T+LMAFF+++ + K + K Sbjct: 28 CPPCKSGAPSWMATFADMATLLMAFFVLLLSFAEVNVPKFKQVAGSIASAFGVARIVPKI 87 Query: 76 LMTASKGIFDEQNPPERSSQNKIDL--SIDEHITKNSVDLKIGSTNQKKQYQRL------ 127 + A+ + ++ P R+ ID E IT+ V K + + + Q Sbjct: 88 SIPAATSLVTQEYTPSRAEATVIDQKRQRSEDITQEFVVKKTETEDADFKTQEEFRSVTE 147 Query: 128 ---------------ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE- 171 E+N + +S ++ G T +E + E Sbjct: 148 ALAEQIEQGQVQVTIEDNKVVVELRAESASGGQDYDNEASGGGGPISQTTIEVASKVVEL 207 Query: 172 ------------------------NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 A +R++ + D ++I +L+ + Sbjct: 208 QSKISTEIQVRKQQLASGEQSGGLESDSDSNQSSGGSADQRRQDIDDKYQQIRLSLAADI 267 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 + + E R G I I+ + F SS P +L ++G L+ ++ + Sbjct: 268 NNGLA-----EVERDGDKI-IVRLASQGSFVSGSSNLQPGFTGLLTRVGNSLSVTSGKVR 321 Query: 268 IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + GHTD P R NW LS R+ S + + ++GFA R +++ Sbjct: 322 VEGHTDNIPVAFSERFNSNWDLSAARSASVADFFADNSELDQSAITVAGFADTRPIDSNN 381 Query: 326 P--MNSANRRIDILVE 339 + NRRI+++V+ Sbjct: 382 TAAGRARNRRIEVIVD 397 >gi|229155299|ref|ZP_04283410.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] gi|228628224|gb|EEK84940.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] Length = 213 Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D+E+ K +P +S EK M KKR+ +L KK+ + V +N + Sbjct: 31 KMLEKFSDVEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 86 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + IID +FD + PE ++ ++ I + GHTD Sbjct: 87 QVNVYREDTGVSVVIIDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 143 Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 + P N NW LS R A + ++ V + R++ + G+A + + +D P N Sbjct: 144 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 202 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 203 KNRRVVIYIKE 213 >gi|206974802|ref|ZP_03235717.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97] gi|222095352|ref|YP_002529412.1| flagellar motor protein mots [Bacillus cereus Q1] gi|206746821|gb|EDZ58213.1| putative chemotaxis protein MotB [Bacillus cereus H3081.97] gi|221239410|gb|ACM12120.1| chemotaxis protein MotB, putative [Bacillus cereus Q1] Length = 225 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 11/190 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK KKR+ DL KK+ + V +N + Sbjct: 43 KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKTVSKKRMDDLYKKLKA----YVDNNGIS 98 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ K+ I + GHTD Sbjct: 99 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHTD 155 Query: 274 ASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330 + P N NW LS RA + L++ ED+ G+A + + +D P N Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWEK 215 Query: 331 NRRIDILVED 340 NRR+ I +++ Sbjct: 216 NRRVVIYIKE 225 >gi|30019773|ref|NP_831404.1| flagellar motor protein MotS [Bacillus cereus ATCC 14579] gi|229127054|ref|ZP_04256053.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] gi|29895318|gb|AAP08605.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579] gi|228656407|gb|EEL12246.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] Length = 226 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 13/230 (5%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G ++ ++ L + S + K L K +D E+ K + Sbjct: 5 GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTEQVDAKVMENTI 64 Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P +S EK M KKR+ +L KK+ + V +N + V TG+ + I+D Sbjct: 65 PDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 117 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292 +FD + PE ++ ++ I + GHTD+ P N NW LS R A Sbjct: 118 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 177 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + ++ V + R++ + G+A + + +D P N NRR+ I +++ Sbjct: 178 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPNDSPQNWEKNRRVVIYIKE 226 >gi|228926763|ref|ZP_04089831.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832876|gb|EEM78445.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 227 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ +L KK+ + Sbjct: 34 ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKAY 93 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L N + V TG+ + I+D +FD + PE ++ ++ Sbjct: 94 LDN----NGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227 >gi|229096214|ref|ZP_04227187.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] gi|229102326|ref|ZP_04233035.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] gi|229115169|ref|ZP_04244579.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228668309|gb|EEL23741.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228681227|gb|EEL35395.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] gi|228687174|gb|EEL41079.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] Length = 213 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P ++ EK M KKR+ +L KK+ + V +N + Sbjct: 31 KMLEKFSDAEQVDAKVMENTIPDITHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 86 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ ++ I + GHTD Sbjct: 87 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIMSQLVGFFQSVPNPIVVEGHTD 143 Query: 274 ASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 + P N NW LS R A + ++ V + R++ + G+A + + +D P N Sbjct: 144 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 202 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 203 KNRRVVIYIKE 213 >gi|65318994|ref|ZP_00391953.1| COG1360: Flagellar motor protein [Bacillus anthracis str. A2012] gi|228933012|ref|ZP_04095875.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826613|gb|EEM72384.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ +L KK+ + Sbjct: 34 ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 92 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ ++ Sbjct: 93 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227 >gi|30261729|ref|NP_844106.1| flagellar motor protein MotS [Bacillus anthracis str. Ames] gi|47526945|ref|YP_018294.1| flagellar motor protein MotS [Bacillus anthracis str. 'Ames Ancestor'] gi|49184555|ref|YP_027807.1| flagellar motor protein MotS [Bacillus anthracis str. Sterne] gi|165869455|ref|ZP_02214114.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488] gi|167633407|ref|ZP_02391732.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442] gi|167639130|ref|ZP_02397403.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193] gi|170686155|ref|ZP_02877377.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465] gi|170706447|ref|ZP_02896907.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389] gi|177650324|ref|ZP_02933291.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174] gi|190566282|ref|ZP_03019200.1| putative chemotaxis protein MotB [Bacillus anthracis Tsiankovskii-I] gi|218902843|ref|YP_002450677.1| putative chemotaxis protein MotB [Bacillus cereus AH820] gi|225863587|ref|YP_002748965.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102] gi|227815517|ref|YP_002815526.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684] gi|229604338|ref|YP_002866130.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248] gi|254683216|ref|ZP_05147077.1| flagellar motor protein MotS [Bacillus anthracis str. CNEVA-9066] gi|254723805|ref|ZP_05185591.1| flagellar motor protein MotS [Bacillus anthracis str. A1055] gi|254734568|ref|ZP_05192280.1| flagellar motor protein MotS [Bacillus anthracis str. Western North America USA6153] gi|254740977|ref|ZP_05198665.1| flagellar motor protein MotS [Bacillus anthracis str. Kruger B] gi|254755218|ref|ZP_05207252.1| flagellar motor protein MotS [Bacillus anthracis str. Vollum] gi|254759755|ref|ZP_05211779.1| flagellar motor protein MotS [Bacillus anthracis str. Australia 94] gi|30255957|gb|AAP25592.1| putative chemotaxis protein MotB [Bacillus anthracis str. Ames] gi|47502093|gb|AAT30769.1| putative chemotaxis protein MotB [Bacillus anthracis str. 'Ames Ancestor'] gi|49178482|gb|AAT53858.1| chemotaxis protein MotB, putative [Bacillus anthracis str. Sterne] gi|164714895|gb|EDR20413.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0488] gi|167512920|gb|EDR88293.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0193] gi|167531445|gb|EDR94123.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0442] gi|170128545|gb|EDS97412.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0389] gi|170669852|gb|EDT20593.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0465] gi|172083468|gb|EDT68528.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0174] gi|190562417|gb|EDV16384.1| putative chemotaxis protein MotB [Bacillus anthracis Tsiankovskii-I] gi|218535723|gb|ACK88121.1| putative chemotaxis protein MotB [Bacillus cereus AH820] gi|225787259|gb|ACO27476.1| putative chemotaxis protein MotB [Bacillus cereus 03BB102] gi|227002562|gb|ACP12305.1| putative chemotaxis protein MotB [Bacillus anthracis str. CDC 684] gi|229268746|gb|ACQ50383.1| putative chemotaxis protein MotB [Bacillus anthracis str. A0248] Length = 225 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ +L KK+ + Sbjct: 32 ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 90 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ ++ Sbjct: 91 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 144 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 145 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 203 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 204 VVPNDSPQNWEKNRRVVIYIKE 225 >gi|302389670|ref|YP_003825491.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646] gi|302200298|gb|ADL07868.1| OmpA/MotB domain protein [Thermosediminibacter oceani DSM 16646] Length = 248 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 6/147 (4%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + +T ++ +N +KG+ E G+ I I+ +FD + + VL KI Sbjct: 96 ENLENTFQEIINENNLKGIRVEREERGLAIRFIE---GALFDSGKAYLREDARQVLDKIA 152 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I + GHTD P N NW LS RA + + ++ + +G+ Sbjct: 153 PILKKIQRPIRVEGHTDNVPIHNSEFPSNWELSTTRAVNVVRYFIEKHNISPHMISAAGY 212 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 + +D + NRR+DI++ + Sbjct: 213 GEYHPIAPNDSEKNRALNRRVDIIILN 239 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 14/166 (8%) Query: 17 IKKK--VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK----KAIEQYFN 70 ++++ D P W Y D +T ++ FF++++ ++ D +++ F Sbjct: 4 VRRRNGGGSDSQPPGAPLWMTTYGDLITQILIFFVLLFALSNIDAKKFDMAMASLQGSFG 63 Query: 71 PFGKNLMTASKGIFDEQ-------NPPERSSQNKIDLSIDEHITKNSVD-LKIGSTNQKK 122 +KG + ER ++ + E I +N++ +++ + Sbjct: 64 LLDGGTTMINKGFIEGDALGGNLSGAGERREFENLENTFQEIINENNLKGIRVEREERGL 123 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 + +E +F + E + L + + K + + +E + Sbjct: 124 AIRFIEGALFDSGKAYLREDARQVLDKIAPILKKIQRPIRVEGHTD 169 >gi|42780820|ref|NP_978067.1| flagellar motor protein MotS [Bacillus cereus ATCC 10987] gi|42736740|gb|AAS40675.1| chemotaxis protein MotB, putative [Bacillus cereus ATCC 10987] gi|324325747|gb|ADY21007.1| flagellar motor protein MotS [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 11/190 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK M KKR+ DL KK+ + V +N + Sbjct: 43 KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMVSKKRMDDLYKKLKA----YVDNNGIS 98 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ K+ I + GHTD Sbjct: 99 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISKLVGFFQSVPNSIVVEGHTD 155 Query: 274 ASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330 + P N NW LS RA + L++ ED+ G+A + + +D P N Sbjct: 156 SRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPNDSPQNWEK 215 Query: 331 NRRIDILVED 340 NRR+ I +++ Sbjct: 216 NRRVVIYIKE 225 >gi|118477164|ref|YP_894315.1| flagellar motor protein MotS [Bacillus thuringiensis str. Al Hakam] gi|228945331|ref|ZP_04107686.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183920|ref|ZP_04311136.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] gi|301053265|ref|YP_003791476.1| flagellar motor protein [Bacillus anthracis CI] gi|118416389|gb|ABK84808.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam] gi|228599572|gb|EEK57176.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] gi|228814303|gb|EEM60569.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|300375434|gb|ADK04338.1| flagellar motor protein [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK M KKR+ +L KK+ + Sbjct: 34 ATSKQDAVKLSKMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 92 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ ++ Sbjct: 93 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227 >gi|308126360|ref|ZP_07663727.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] gi|308109365|gb|EFO46905.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] Length = 161 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAY 293 MF + + P +L + + T + I GHTDA PF R + NW LS RA Sbjct: 1 MFSRGGAELTPFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRAD 60 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 A + L++ G+ +DR+ +++G + L +P +S NRRI++ + Sbjct: 61 VARKTLVEGGMPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT 107 >gi|49480957|ref|YP_035848.1| flagellar motor protein MotS [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143729|ref|YP_083099.1| flagellar motor protein MotS [Bacillus cereus E33L] gi|196033392|ref|ZP_03100804.1| putative chemotaxis protein MotB [Bacillus cereus W] gi|196039124|ref|ZP_03106431.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99] gi|196045046|ref|ZP_03112279.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108] gi|49332513|gb|AAT63159.1| chemotaxis motB protein, OmpA family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977198|gb|AAU18748.1| chemotaxis motB protein, OmpA family [Bacillus cereus E33L] gi|195993826|gb|EDX57782.1| putative chemotaxis protein MotB [Bacillus cereus W] gi|196024048|gb|EDX62722.1| putative chemotaxis protein MotB [Bacillus cereus 03BB108] gi|196030269|gb|EDX68869.1| putative chemotaxis protein MotB [Bacillus cereus NVH0597-99] Length = 225 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK M KKR+ +L KK+ + V +N + Sbjct: 43 KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 98 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ ++ I + GHTD Sbjct: 99 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 155 Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 + P N NW LS R A + ++ V + R++ + G+A + + +D P N Sbjct: 156 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|228984812|ref|ZP_04144984.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775010|gb|EEM23404.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK M KKR+ +L KK+ + V +N + Sbjct: 43 KMLEKFSDAEQVDAKIMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 98 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ ++ I + GHTD Sbjct: 99 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 155 Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 + P N NW LS R A + ++ V + R++ + G+A + + +D P N Sbjct: 156 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 214 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 215 KNRRVVIYIKE 225 >gi|229172375|ref|ZP_04299934.1| OmpA/MotB domain protein [Bacillus cereus MM3] gi|228610846|gb|EEK68109.1| OmpA/MotB domain protein [Bacillus cereus MM3] Length = 227 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 + L K +D+E+ K +P +S EK M KKR+ +L KK+ + V +N + Sbjct: 45 QMLEKFSDVEQVDAKVMENTIPDISHEKNDEKMVSKKRMDELYKKLKA----YVDNNGIS 100 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ ++ I + GHTD Sbjct: 101 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 157 Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-S 329 + P N NW LS R A + ++ V + R++ + G+A + + +D P N Sbjct: 158 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWE 216 Query: 330 ANRRIDILVED 340 NRR+ I +++ Sbjct: 217 KNRRVVIYIKE 227 >gi|229029408|ref|ZP_04185491.1| OmpA/MotB domain protein [Bacillus cereus AH1271] gi|228731867|gb|EEL82766.1| OmpA/MotB domain protein [Bacillus cereus AH1271] Length = 227 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 11/201 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K +D+E+ K +P +S EK M KKR+ DL KK+ + Sbjct: 34 ATSKQDTVKLSKMLEKFSDVEQVDAKVMENTIPDISHEKNDEKMISKKRMDDLYKKLKA- 92 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V N + V TG+ + I+D +FD + PE ++ ++ Sbjct: 93 ---YVDSNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD+ P N NW LS RA + L++ ED+ G+A + Sbjct: 147 PNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPV 206 Query: 322 IASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 207 VPNDSPQNWEKNRRVVIYIKE 227 >gi|134300281|ref|YP_001113777.1| OmpA/MotB domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052981|gb|ABO50952.1| OmpA/MotB domain protein [Desulfotomaculum reducens MI-1] Length = 261 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 9/186 (4%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETT 220 + + +P S+ K L ++ Q +KI + V N + G V Sbjct: 58 GSQSIMESGGPSMVPGASESKELDTAMEQIEQQKMEKIKKQIQEYVDKNGLSGKVTVAIE 117 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RN 279 G+++S D +F + +P + ++ K+G +L+ + I + GHTD P N Sbjct: 118 ERGVVVSFQD---VVLFPLGVADLVPHSQGIVDKVGAILSQTPNYIRVEGHTDNLPIQTN 174 Query: 280 IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 NW LSL R+ S L+ S + DR+S +G+ +R + SD NRR+DI Sbjct: 175 KFPSNWELSLARSASVVHRLINFSHIPPDRLSA-TGYGEYRPRRANDSDANRQQNRRVDI 233 Query: 337 LVEDRQ 342 +V + Sbjct: 234 IVLRTK 239 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 +K + N W I Y+D +T+L+ FF+VM+ ++ D + AI M Sbjct: 2 RKRGQEPEKENNERWLITYSDLITLLLIFFVVMYTLSKVDANKYHAIASSL----AKTMG 57 Query: 79 ASKGIFDEQNP---PERSSQNKIDLSIDE 104 S+ I + P P S ++D ++++ Sbjct: 58 GSQSIMESGGPSMVPGASESKELDTAMEQ 86 >gi|114565809|ref|YP_752963.1| hypothetical protein Swol_0240 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336744|gb|ABI67592.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 281 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 13/195 (6%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL-------QDLAKKISSTLSGLVADN 210 + + + ++ + P + + KR+ +DL + Sbjct: 70 TQGPSMVEGLSGQMLPEGPGTIPDNQGQLDEVKRMIAEFIKAEDLTADEAQKGGSTSTTR 129 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + ++ G++IS D +F S P ++Q+IG L I + G Sbjct: 130 LSDNLIVYEQERGLVISFKDTM---LFASGSDELTPRAREIIQQIGGALLKLPNFIRVEG 186 Query: 271 HTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 HTD P NW LS+ RA + VL ++ I G+ +R +A+ D Sbjct: 187 HTDNRPINTAKFPSNWELSVLRASNVVHVLNENARIPAERLSIIGYGENRPLVANDSDEG 246 Query: 328 NSANRRIDILVEDRQ 342 + NRR+DI++ ++ Sbjct: 247 RAMNRRVDIVILKKK 261 >gi|312879597|ref|ZP_07739397.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260] gi|310782888|gb|EFQ23286.1| OmpA/MotB domain protein [Aminomonas paucivorans DSM 12260] Length = 242 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 A KR + + ++ L L + + K + + + G+ +S+ +Q +F Sbjct: 79 QDAGDANKRTEQFKQGVAQQLQALAEREGLQKEITVKVNQRGVTVSLSEQ---FLFAPGG 135 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300 + P + VL KIG++L +++ GHTD +P R DNW LS RA L Sbjct: 136 ADLSPLSRRVLFKIGQILKTFPNQLAVEGHTDNAPLRGGLYKDNWGLSAGRAAVVASYLA 195 Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + G+S +R+ + G+ + + +D + NRR+D+++ + Sbjct: 196 GTVGLSPNRLEAV-GYGSAKPIVPNDTPEHRALNRRVDLVLLTQ 238 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 38/111 (34%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + Y D +T+L+ FF+ ++ ++ D K + F L Sbjct: 1 MARKKKEAQGSAGAPLFMATYGDMVTLLLTFFVFLYSFSSIDVQKFKKMMFSFQGALGVL 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 D Q+ D + K V ++ + +++ Q+ Sbjct: 61 PGGKTIQEDSGVYQGYVGQDAGDANKRTEQFKQGVAQQLQALAEREGLQKE 111 >gi|91776302|ref|YP_546058.1| OmpA/MotB [Methylobacillus flagellatus KT] gi|91710289|gb|ABE50217.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 267 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 7/215 (3%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + L+++ S N+ S D + D + + L ++ + Sbjct: 43 DQKYKELTSALGSAFSGNTNDNTSSPSPDTPPAADRHVLKTTPTSSLIHALPLSRLQKER 102 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++K + ++ I++ L + T G+ I I D +F S+ E Sbjct: 103 QRKEQESISAMIATLNRALGNLATNGKISISKTSLGVRIDIAD---GVLFQAGSAAIKAE 159 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSE 306 + +I ++LA I + GHTD P N NW LS RA S + ++++G+ Sbjct: 160 ADAPISEITQILADQQYAIQVEGHTDNVPISNAQFPSNWELSSMRATSVVRKMIENGIDA 219 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 R+S + G++ + + + NRR+ I+V Sbjct: 220 ARLSAV-GYSDTQPIADNQTAEGRAQNRRVSIMVL 253 >gi|306820125|ref|ZP_07453773.1| chemotaxis protein MotB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551903|gb|EFM39846.1| chemotaxis protein MotB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 250 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 83/188 (44%), Gaps = 14/188 (7%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 D +++ E + + + ++ + + K+I L + + K + Sbjct: 61 DGGNTLSSENKIEKGSVFEGQSSSVAESNNFEKMEKQIKEYLEE---NKLEKQISISNEE 117 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFR 278 G+++ D +FD+ S+ P++ VL+ +G +L +S+ GHTD P Sbjct: 118 EGLVLRFQDS---SLFDQGSATLKPQSYNVLKYVGGILKSKNFKDKFVSVEGHTDNVPIS 174 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 + NW LS +RA + + L+++ G+ R+ +G+ + +D + NRR+ Sbjct: 175 TSTHQSNWELSSNRASNVVRYLIENQGIDPKRL-STAGYGEYHPVAPNDTPANMAKNRRV 233 Query: 335 DILVEDRQ 342 DI++ + Sbjct: 234 DIMILRTK 241 >gi|89895779|ref|YP_519266.1| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51] gi|89335227|dbj|BAE84822.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 275 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 9/195 (4%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E G + +E + P E + I L ADN Sbjct: 64 EIGASPSGPSLIETYPTNKPQEGKEPEDGEGNGDGTGADMENMTIETIKQKLDKFAADNG 123 Query: 212 VK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 ++ ++ G++ISI D +F+ +++ P+ +L KI VLA + I + G Sbjct: 124 IETKLVSSIEERGLVISIQDT---LLFESGAAVITPKAREILDKINNVLASAPNYIKVEG 180 Query: 271 HTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327 HTD P N NW LS+ RA + ++ + + +++S +G+ +R A+D Sbjct: 181 HTDNLPINTNRFPSNWELSVLRATNVVHIMQEI-IPAEQLSA-TGYGEYRPLAANDTEAG 238 Query: 328 NSANRRIDILVEDRQ 342 + NRR+D+++ + Sbjct: 239 RARNRRVDLVILRSK 253 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 43/126 (34%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + +N W + Y+D +T+LM FF+VM+ ++ D + ++I + + Sbjct: 1 MARKRIEEPEKDNSERWLLTYSDLITLLMIFFVVMYSMSKVDAEKFQSIAESLSVALGGG 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G + E G+ + + ++ + + Sbjct: 61 TRVEIGASPSGPSLIETYPTNKPQEGKEPEDGEGNGDGTGADMENMTIETIKQKLDKFAA 120 Query: 137 SQQSEH 142 E Sbjct: 121 DNGIET 126 >gi|213583424|ref|ZP_03365250.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 142 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM 300 P +L+ I VL IS+ GHTD P+ N NW LS DRA ++ + L+ Sbjct: 1 EVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELV 60 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 61 AGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQA 103 >gi|147678453|ref|YP_001212668.1| flagellar motor protein [Pelotomaculum thermopropionicum SI] gi|146274550|dbj|BAF60299.1| flagellar motor protein [Pelotomaculum thermopropionicum SI] Length = 255 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 11/201 (5%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 ++ +S E + L + A L+ L +++ + Sbjct: 51 AIAMSLASAMGGGQSVMTEPGASLAPGVSGSSLPADLGQAAAEAADLESLRRELQEYIEQ 110 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 + + V G+++S +D +F S+ PE + KIG++L + Sbjct: 111 ---NGLTGRVSVNLEERGLVLSFLD---VALFPLGSARLTPEAQETVGKIGKILLKAPNY 164 Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA 323 I + GHTD P NW LS+ RA S Q L+ K +R+S +G+ R ++ Sbjct: 165 IRVEGHTDNLPINTREFPSNWELSVARATSVVQELIHKLNFPPERLSA-TGYGEFRPRMP 223 Query: 324 SD--PMNSANRRIDILVEDRQ 342 +D NRR+D+++ + Sbjct: 224 NDSAEHRQQNRRVDLVILRSK 244 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 I K+ + W + Y+D +T+LM FF+VM+ +++ + KAI Sbjct: 2 IRKKQGQSQKSGKAGHERWLLTYSDLITLLMIFFVVMYSLSSINARKFKAIAMSL----A 57 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSID 103 + M + + E + L D Sbjct: 58 SAMGGGQSVMTEPGASLAPGVSGSSLPAD 86 >gi|229058360|ref|ZP_04196744.1| OmpA/MotB domain protein [Bacillus cereus AH603] gi|229166569|ref|ZP_04294321.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228616823|gb|EEK73896.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228719869|gb|EEL71459.1| OmpA/MotB domain protein [Bacillus cereus AH603] Length = 225 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 13/216 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-R 188 ++ L + S + K L K +D E+ K +P +S EK Sbjct: 18 DLTMLLLTFFVLLVATSKQDTVKLSKMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVS 77 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KKR+ +L KK+ + V +N V V TG+ I I+D +FD + PE Sbjct: 78 KKRMDELYKKLKA----YVDNNGVSQVNVYREDTGVSIVIVDN---LIFDTGDANVKPEA 130 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSE 306 V+ ++ I + GHTD+ P N NW LS R A + ++ V + Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190 Query: 307 DRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 R++ + G+A + ++D P N NRR+ I +++ Sbjct: 191 KRLAAV-GYADTKPVASNDSPQNWEKNRRVVIYIKE 225 >gi|206970743|ref|ZP_03231695.1| putative chemotaxis protein MotB [Bacillus cereus AH1134] gi|218233445|ref|YP_002366413.1| flagellar motor protein MotS [Bacillus cereus B4264] gi|218896660|ref|YP_002445071.1| putative chemotaxis protein MotB [Bacillus cereus G9842] gi|296502310|ref|YP_003664010.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171] gi|206734379|gb|EDZ51549.1| putative chemotaxis protein MotB [Bacillus cereus AH1134] gi|218161402|gb|ACK61394.1| putative chemotaxis protein MotB [Bacillus cereus B4264] gi|218544664|gb|ACK97058.1| putative chemotaxis protein MotB [Bacillus cereus G9842] gi|296323362|gb|ADH06290.1| flagellar motor protein MotS [Bacillus thuringiensis BMB171] Length = 225 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 13/230 (5%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G ++ ++ L + S + K L K +D + K + Sbjct: 4 GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTGQVDAKVMENTI 63 Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P +S EK M KKR+ +L KK+ + V +N + V TG+ + I+D Sbjct: 64 PDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 116 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292 +FD + PE ++ ++ I + GHTD+ P N NW LS R A Sbjct: 117 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 176 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + ++ V + R++ + G+A + + +D P N NRR+ I +++ Sbjct: 177 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPNDSPQNWEKNRRVVIYIKE 225 >gi|253996642|ref|YP_003048706.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8] gi|253983321|gb|ACT48179.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8] Length = 271 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 13/199 (6%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK---KISST 202 S S + + K I + + + PL + + K ++ +AK ++S+ Sbjct: 60 SGNGSSGVNQTSTEKGLGAKGITEANSSIVKPLPLSHLYSEKLRRERDSMAKTGVEVSNK 119 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ ++ + ++ + T GI I I D +F S+ P ++ +I ++ + Sbjct: 120 LAPMINEGKIQVI---QTSRGIRIDIQDN---LLFGAGSADLSPTANAIISEIVPLIKDN 173 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD +P N NW LS RA S ++L G+SE R+S +G + Sbjct: 174 QRKIQVEGHTDNTPIHNATFFSNWELSAVRASSVVRLLSALGISEQRLSA-TGLGASQPI 232 Query: 322 --IASDPMNSANRRIDILV 338 S+ + NRR+ I++ Sbjct: 233 SENESEAGRAKNRRVSIII 251 >gi|228914307|ref|ZP_04077922.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845301|gb|EEM90337.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISST 202 S + K L K ++ E+ K +P +S EK M KKR+ +L KK+ + Sbjct: 34 ATSKQDAVKLSKMLEKFSNTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA- 92 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N + V TG+ + I+D +FD + PE ++ ++ Sbjct: 93 ---YVDNNGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSV 146 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 147 PNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205 Query: 321 KIASD-PMN-SANRRIDILVED 340 + +D P N NRR+ I +++ Sbjct: 206 VVPNDSPQNWEKNRRVVIYIKE 227 >gi|254519159|ref|ZP_05131215.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226912908|gb|EEH98109.1| OmpA/MotB domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 242 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 18/206 (8%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + S+ G + S + S + E+ P + E+ + ++ D+ K + Sbjct: 44 KQLATSMGDVFIGGYSVLGSAENSGSSSDEQGELKPLVQTEEEKLQGIESQVNDIVKDLE 103 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + V G++IS D FD + + E L + +L Sbjct: 104 ----------LEGSVTTSIEERGLIISFTDN---VFFDSAKADIKEELKPKLISVSNILN 150 Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHH 318 + + GHTD P NW+LS RA + + L+ G +S R+S + G+ + Sbjct: 151 KIDNYVRVEGHTDNLPISTSDYHSNWQLSSVRASNVVEFLISYGSISPSRLSAV-GYGEY 209 Query: 319 RLKIAS--DPMNSANRRIDILVEDRQ 342 R + + + NRR+DIL+ + + Sbjct: 210 RPVADNTAEEGRAKNRRVDILILNNK 235 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +KK+V P N W + Y+D +T+LM FF+V++ ++ ++ K + Sbjct: 1 MKKRVEK---PENHERWLLTYSDLITLLMIFFVVLYSASSVNESKYKQLATSMGDVFIGG 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEH 105 + + + + + K + +E Sbjct: 58 YSVLGSAENSGSSSDEQGELKPLVQTEEE 86 >gi|75760652|ref|ZP_00740680.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900309|ref|ZP_04064539.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] gi|228907361|ref|ZP_04071219.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] gi|228920439|ref|ZP_04083784.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938842|ref|ZP_04101442.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952108|ref|ZP_04114203.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958007|ref|ZP_04119744.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971723|ref|ZP_04132344.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978332|ref|ZP_04138709.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|229043482|ref|ZP_04191192.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|229069280|ref|ZP_04202570.1| OmpA/MotB domain protein [Bacillus cereus F65185] gi|229078910|ref|ZP_04211462.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|229109185|ref|ZP_04238784.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|229144340|ref|ZP_04272746.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|229149929|ref|ZP_04278157.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|229178137|ref|ZP_04305508.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|229189825|ref|ZP_04316836.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|74491866|gb|EAO55054.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228593633|gb|EEK51441.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|228605267|gb|EEK62717.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|228633610|gb|EEK90211.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|228639127|gb|EEK95551.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|228674195|gb|EEL29440.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|228704324|gb|EEL56758.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|228713767|gb|EEL65652.1| OmpA/MotB domain protein [Bacillus cereus F65185] gi|228725860|gb|EEL77107.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|228781349|gb|EEM29550.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|228787813|gb|EEM35771.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801714|gb|EEM48594.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807640|gb|EEM54164.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820691|gb|EEM66716.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839069|gb|EEM84365.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852222|gb|EEM97018.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] gi|228859344|gb|EEN03774.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] Length = 226 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 13/230 (5%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G ++ ++ L + S + K L K +D + K + Sbjct: 5 GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTGQVDAKVMENTI 64 Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P +S EK M KKR+ +L KK+ + V +N + V TG+ + I+D Sbjct: 65 PDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 117 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292 +FD + PE ++ ++ I + GHTD+ P N NW LS R A Sbjct: 118 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 177 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 + ++ V + R++ + G+A + + +D P N NRR+ I +++ Sbjct: 178 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPNDSPQNWEKNRRVVIYIKE 226 >gi|163939534|ref|YP_001644418.1| flagellar motor protein MotS [Bacillus weihenstephanensis KBAB4] gi|163861731|gb|ABY42790.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4] Length = 227 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 13/202 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQDLAKKISST 202 S + K L K +D E+ K +P +S EK KKR+ +L KK+ + Sbjct: 34 ATSKQDTVKLSKMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVSKKRMDELYKKLKA- 92 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 V +N V V TGI I I+D +FD + PE V+ ++ Sbjct: 93 ---YVDNNGVSQVNVYREDTGISIVIVDN---LIFDTGDANVKPEAKEVISQLVGFFQSV 146 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD+ P N NW LS R A + ++ V + R++ + G+A + Sbjct: 147 PNPIVVEGHTDSRPIHNENFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKP 205 Query: 321 KIASD-PMN-SANRRIDILVED 340 ++D P N NRR+ I +++ Sbjct: 206 VASNDSPQNWEKNRRVVIYIKE 227 >gi|224825740|ref|ZP_03698844.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224601964|gb|EEG08143.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 271 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 T ++ + + + +K + RL LA + + LV V Sbjct: 66 QTTPPTGGANTMIEVAQNKPVAKAVKGEQQLKEQARLGSLASDLQKVMEPLVKGG---QV 122 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + G+ I I D +F + + P P+++ VL ++ +VL+ I++ G TD Sbjct: 123 KITQSPKGVTIEIRDS---ALFPIAQAQPAPQSLQVLAQMAKVLSQVDNPITVEGFTDNI 179 Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332 P RN NW LS RA S ++ +++G++ R+ + G A + + + ++NR Sbjct: 180 PIRNTFYPSNWELSAARAGSVVRLFVENGIAPARLVAV-GRAENLPVADNTSEEGRASNR 238 Query: 333 RIDILVED 340 R+ I V Sbjct: 239 RVSITVRS 246 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 20/204 (9%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ +D N W + YADF+T+L AFF+VM+ I++ ++ + + + Sbjct: 1 MARRRRSEDEHENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSSAI----VDA 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 I + PP + I + +N K Q+ + Q ++ Sbjct: 57 FRTGTTISLQTTPPTGGANTMI------EVAQNKPVAKAVKGEQQLKEQARLGSLASDLQ 110 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 K + ++ K + I ++ P + A + + L +A Sbjct: 111 KVMEPLVKGGQVKITQSPKGVT--------IEIRDSALFPIAQAQP--APQSLQVLAQMA 160 Query: 197 KKISSTLSGLVADNIVKGVLFETT 220 K +S + + + + T Sbjct: 161 KVLSQVDNPITVEGFTDNIPIRNT 184 >gi|284989545|ref|YP_003408099.1| OmpA/MotB domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062790|gb|ADB73728.1| OmpA/MotB domain protein [Geodermatophilus obscurus DSM 43160] Length = 313 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 105/312 (33%), Gaps = 62/312 (19%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YAD MT+L+ F+V++ ++ D A+ KG+ P Sbjct: 26 WLVSYADMMTLLLVLFVVLYAMSQVDQQKFAALA--------------KGLAASFGGPVT 71 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 +VD+ + Sbjct: 72 VQPGPTPEGSVLDGLPGAVDIASAIVPDQ------------------------------- 100 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + + L++ + +A + + +DL++ + L A Sbjct: 101 ----------TVEQAEVDAAAAQAALAEARQVAAEARAEYEDLSEVREQIEAALAAAGHA 150 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 FE G+++ I+ + +FD ++ PE +L I L + + GH Sbjct: 151 GAARFEIDERGLVVHIV--ADQVLFDAEQAVLRPEGRQILDAIAPTLRGLPNSLGVEGHA 208 Query: 273 DASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMN- 328 + P NW LS RA + + L GV R+ +G++ R + +DP + Sbjct: 209 NHLPVTPGGIWPSNWELSAYRATTVVRYLTTGGVPGARMVA-NGYSDTRPLVPPTDPNSI 267 Query: 329 SANRRIDILVED 340 S NRR+D++V Sbjct: 268 SVNRRVDVVVLS 279 >gi|254517026|ref|ZP_05129084.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3] gi|219674531|gb|EED30899.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3] Length = 270 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 109/324 (33%), Gaps = 69/324 (21%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + ++ +N W + YADF+T+L AFF+VM+ +A + + + Sbjct: 3 RRKPPESVDNHDRWLVSYADFITLLFAFFVVMYSTSAVNVGDFRVLSDSI----VQAFGL 58 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 FD P Sbjct: 59 PGVSFDPSRPNGDG---------------------------------------------- 72 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + L D L+ + N + + + ++ + + + Sbjct: 73 --TSSSRLGIPQAAVADEAPRVPLQSAANARTP-------EAALGDIASEQEMTGVEAAV 123 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 +++ L+A + + I I +F S L +I +L+++ + L Sbjct: 124 QTSIGDLIAPD---RFAVTGNDKWLEIKI---PARMLFPSGSRSLLASSIPMLRRLADTL 177 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + ++GHTD P RN NW LS RA + +V + GV ++S + GF + Sbjct: 178 KALPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAAIARVFEEEGVDPVKLSAV-GFGPN 236 Query: 319 RLK--IASDPMNSANRRIDILVED 340 R AS+ + NRR+ +LV Sbjct: 237 RPIADNASEEGRAENRRVVVLVRS 260 >gi|219670208|ref|YP_002460643.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2] gi|219540468|gb|ACL22207.1| OmpA/MotB domain protein [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 9/195 (4%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 E G + +E + P E + I L ADN Sbjct: 64 EIGASPSGPSLIETYPTNKPQEGKAPEDGEGNGDGTGADMENMTIETIKQKLDKFAADNG 123 Query: 212 VK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 ++ ++ G++ISI D +F+ +++ P+ +L KI VLA + I + G Sbjct: 124 IETKLVSSIEERGLVISIQDT---LLFESGAAVITPKAREILDKINNVLASAPNYIKVEG 180 Query: 271 HTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327 HTD P N NW LS+ RA + ++ + + +++S +G+ +R ++D Sbjct: 181 HTDNLPINTNRFPSNWELSVLRATNVVHIMQEI-IPAEQLSA-TGYGEYRPLTSNDTEAG 238 Query: 328 NSANRRIDILVEDRQ 342 + NRR+D+++ + Sbjct: 239 RARNRRVDLVILRSK 253 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 2/138 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + +N W + Y+D +T+LM FF+VM+ ++ D + ++I + + Sbjct: 1 MARKRIEEPEKDNSERWLLTYSDLITLLMIFFVVMYSMSKVDAEKFQSIAESLSVALGGG 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G + P + + ++ G+ + Sbjct: 61 TRVEIG--ASPSGPSLIETYPTNKPQEGKAPEDGEGNGDGTGADMENMTIETIKQKLDKF 118 Query: 137 SQQSEHCKNSLTRDSEKG 154 + + ++ E+G Sbjct: 119 AADNGIETKLVSSIEERG 136 >gi|229132541|ref|ZP_04261390.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] gi|228650887|gb|EEL06873.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] Length = 225 Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 13/216 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-R 188 ++ L + S + K L K +D E+ K +P +S EK Sbjct: 18 DLTMLLLTFFVLLVATSKQDTVKLSKMLEKFSDAEQVDAKVMEGTIPDISHEKNDEKAVS 77 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 KKR+ +L KK+ + V +N V V TG+ I I+D +FD + PE Sbjct: 78 KKRMDELYKKLKA----YVDNNGVSQVNVYREDTGVSIVIVDN---LIFDTGDANVKPEA 130 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-AYSAYQVLMKSGVSE 306 V+ ++ I + GHTD+ P N NW LS R A + ++ V + Sbjct: 131 KEVISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAANMIHHLIEVYNVDD 190 Query: 307 DRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 R++ + G+A + ++D P N NRR+ I +++ Sbjct: 191 KRLAAV-GYADTKPVESNDSPQNWEKNRRVVIYIKE 225 >gi|150016469|ref|YP_001308723.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902934|gb|ABR33767.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052] Length = 251 Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 12/213 (5%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 ++++S+ NSL G + S + ++ ++ +++L Sbjct: 38 NVDTKKSQTLANSLKIGFNSGNGENVIAVSDSSNSPP-TVIDQQNTQNNSDSIAEEEKLS 96 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D+ KK+ ++ + V G++IS D F+ S P+ L Sbjct: 97 DVKKKVDDLVN---DSELKGSVTTSIQERGLIISFNDS---VFFNSGQSTIKPDWQGKLI 150 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISK 311 I ++L I + GHTD N NW+LS RA + + L+ G V +R+S Sbjct: 151 SISKILNDIDNYIHVEGHTDNVAINNDYFHSNWQLSAVRAANVVEFLISKGNVKPERLSS 210 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G+ +R ++ +ANRR+DI++ + + Sbjct: 211 V-GYGEYRPVKDNNTEDGRAANRRVDIVILNTK 242 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75 +KK + W + Y DF+T++M FFL+M+ I+ D + + F Sbjct: 1 MKKNTKKEKDDT--ERWMLSYLDFITLMMIFFLMMYAISNVDTKKSQTLANSLKIGFNSG 58 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 + D N P + + + I + Sbjct: 59 NGENVIAVSDSSNSPPTVIDQQNTQNNSDSIAEE 92 >gi|538830|pir||F40590 motB homolog lafU - Vibrio parahaemolyticus (fragment) Length = 202 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 64/260 (24%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSV-------------------- 92 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + S H +S + G ++ N +P + Sbjct: 93 --------PSKHNSNHVVSSYFQGDGDGPEI--------------NSLVPGTFDTQEQLA 130 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K ++++ +I N V T G+ I + D MF + + P Sbjct: 131 ALAKVIEEMTAQI----------NAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGAELTP 180 Query: 247 ETIVVLQKIGEVLAHSTEVI 266 +L + + T + Sbjct: 181 FFEDLLLALAPLFEQVTNPL 200 >gi|294828058|ref|NP_712396.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai str. 56601] gi|304570492|ref|YP_001665.2| motility protein B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385905|gb|AAN49414.2| endoflagellar motor protein B [Leptospira interrogans serovar Lai str. 56601] Length = 336 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 11/271 (4%) Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L++ K + N ++ I TK+S K +KQ ++ + I L Sbjct: 73 ELLSREKEFRAKDNDLNIEKIKVLENQIAVLKTKSSNKEKELIDENEKQSKKFRDLIDGL 132 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + E ++ + + K +DLE I +SK K L+ +KK L Sbjct: 133 KEDLERERENCQKKTEALQKEYERKISDLESRI----LVLNDEISKLKHLSENQKKELDR 188 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L+ + + + L + + + ++I+I D+ + FD S+ + + L K Sbjct: 189 LSDQANELENKLTDEIKKGQIRLKRFHDRLVINIDDKIS---FDSGSADLKKQILPALDK 245 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 I E+L + +I I GHTD P R DNW+LS +RA S ++S + + R + Sbjct: 246 IKEILGNYPGNLIIIEGHTDNVPIRTKKFSDNWQLSGERALSVLHYFLESKILDPRNFSL 305 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +G+ + +++D + NRR+DI+V R Sbjct: 306 AGYGEFQPIVSNDTPENRALNRRVDIVVVPR 336 >gi|121533623|ref|ZP_01665450.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] gi|121307614|gb|EAX48529.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] Length = 262 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L +L K++ ++ +N+ + T G++I I D +F + PE++ Sbjct: 107 QLVELKKQLDRYIAE---NNLAGDIQTALTDDGLMIRIKDT---ALFASGRAELKPESLR 160 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA-YSAYQVLMKSGVSEDR 308 + +I ++A + + + GHTD P NW LS RA +L ++ + +R Sbjct: 161 LGTEIARMIAPLPQRVIVAGHTDNMPINTPEFPSNWDLSTVRALNFMKYMLSQAEIKPER 220 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 I +SG+ +R ++D + NRR+++L+ Sbjct: 221 I-SVSGYGEYRPVASNDTEEGRAKNRRVEVLIMR 253 >gi|119897401|ref|YP_932614.1| flagellar motor protein MotD [Azoarcus sp. BH72] gi|119669814|emb|CAL93727.1| flagellar motor protein MotB [Azoarcus sp. BH72] Length = 279 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 10/198 (5%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 +E G+ + S +E+ + +R++++A++I L+ L Sbjct: 61 NINESGQQIVLPPVSVMSPAAPAPAASTRSPEEEAKRQQTAQRMRNMAEEIRRVLAPLTQ 120 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 D V GI + I + +F + + L+ + +VLA + I+I Sbjct: 121 DG---QVSISEGAFGIAVEI---NASVLFAPGEATLGAPAVSALRAVAQVLAGAEFPITI 174 Query: 269 RGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 GHTD P N+ NW LS RA S ++ ++SGV +R++ +G+A R +D Sbjct: 175 EGHTDNIPISNLRFPSNWELSAVRASSVVRLFIESGVRAERLTA-AGYADQRPVAGNDTD 233 Query: 327 -MNSANRRIDILVEDRQG 343 + NRR+ I++E R G Sbjct: 234 AGRARNRRVTIMIESRVG 251 >gi|188996771|ref|YP_001931022.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931838|gb|ACD66468.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 264 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 8/153 (5%) Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K++ +D KKI + ++ N+ V E G+ I I+D +F S+ E Sbjct: 76 KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILD---YILFPPCSTEINQE 132 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L I EV+ + + + GHTD P NW LS RA + + L+ +G Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + G+A + ++ NRRI+I Sbjct: 193 PPYLFSAVGYADTKPISPNNSELGRKLNRRIEI 225 >gi|237756519|ref|ZP_04585048.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5] gi|237691319|gb|EEP60398.1| chemotaxis protein MotB [Sulfurihydrogenibium yellowstonense SS-5] Length = 264 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 8/153 (5%) Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K++ +D KKI + ++ N+ V E G+ I I+D +F S+ E Sbjct: 76 KQKREDAKKKIKERVEQIIKKLNLEGKVSVEVIPMGVRIRILD---YILFPPCSTEINQE 132 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVS 305 +L I EV+ + + + GHTD P NW LS RA + + L+ +G Sbjct: 133 YKELLNGIAEVIKEAKLPVEVEGHTDDIPPGPTCIYPSNWELSASRAAAVVRYLITAGNL 192 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + G+A + ++ NRRI+I Sbjct: 193 PPYLFSAVGYADTKPISPNNSELGRKLNRRIEI 225 >gi|255021344|ref|ZP_05293392.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] gi|254969207|gb|EET26721.1| Flagellar motor rotation protein MotB [Acidithiobacillus caldus ATCC 51756] Length = 279 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 10/233 (4%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 I S N+ K E + + S + + L + Sbjct: 35 YAISSVNEGKYRVLSETLVSAFTGHPMSITPVQNPAESAGPTSVLKLPPLPAVAKIAATP 94 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 + K A K LQ L K++ L L+ D V ++ G++I D Sbjct: 95 SVAKGVVSPKAQAPKSNTDLQQLQKQMEKLLQPLIRDG---SVAIHSSALGVVI---DLN 148 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291 +F + PE L I ++L I + G T+ P R NW LS R Sbjct: 149 AKILFPSGQATLTPEAQQNLAAIAKILKTVPYQIQVNGFTNDLPIRTAQFPSNWYLSAAR 208 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 A + ++ + GV+ + + +G+ + ++ + NRR+ I+V Q Sbjct: 209 AVAVTELFIAEGVNPEHLVA-AGYGQYHPIEPNNTAAGLAMNRRVSIVVVAPQ 260 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 74/201 (36%), Gaps = 9/201 (4%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + ++ N W + YADF+T+L AFF+VM+ I++ ++ + + + Sbjct: 3 RRKQEEEWENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSE---TLVSAFTGH 59 Query: 80 SKGIFDEQNPPERSSQNKI-DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 I QNP E + + L + K + + + Q ++N + Sbjct: 60 PMSITPVQNPAESAGPTSVLKLPPLPAVAKIAATPSVAKGVVSPKAQAPKSNTDLQQLQK 119 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 Q E L R G S+ L I+ P S + L + ++ L +AK Sbjct: 120 QMEKLLQPLIR---DGSVAIHSSALGVVIDLNAKILFP--SGQATLTPEAQQNLAAIAKI 174 Query: 199 ISSTLSGLVADNIVKGVLFET 219 + + + + + T Sbjct: 175 LKTVPYQIQVNGFTNDLPIRT 195 >gi|323703350|ref|ZP_08115000.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531713|gb|EGB21602.1| OmpA/MotB domain protein [Desulfotomaculum nigrificans DSM 574] Length = 263 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 11/175 (6%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 +++ + ++ ++ + ++I + + + V G+++S D Sbjct: 74 GAAREKSNEQGMPESVEQRNMESIKRQIQDYID---KNGLSGKVTVAIEERGVVVSFQD- 129 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLD 290 +F + P + ++ KIG +L + I + GHTD P R + NW LSL Sbjct: 130 --VVLFPLGVADLNPSSTQIVDKIGAILHQTNNYIRVEGHTDNLPIRTSKFPSNWELSLA 187 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQ 342 RA S L++ SG+ +R+S +G+ +R SD NRR+DI+V + Sbjct: 188 RAASVVHRLIEYSGIPAERLSA-TGYGEYRPRRPNDSDANRQQNRRVDIVVLRTK 241 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +KK+ + +N W I Y+D +T+L+ FF+VM+ ++ D + AI Sbjct: 1 MKKRGGGEPEKDNKERWLITYSDLITLLLIFFVVMYTLSKIDANKYYAIASSL----AKT 56 Query: 77 MTASKGIFDEQN---PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 M S+ I D P + + + + E + + +++ Sbjct: 57 MGGSQSIMDNAGAAIVPGAAREKSNEQGMPESVEQRNMESIKRQIQD 103 >gi|225871803|ref|YP_002753257.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] gi|225791684|gb|ACO31774.1| chemotaxis protein MotB [Acidobacterium capsulatum ATCC 51196] Length = 262 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 11/171 (6%) Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 +P + A++ ++ L+ + +++ L+ +A V + G++IS+ R Sbjct: 70 PVPEANPPADTALQTQENLEKMREQLQKKLAAQIA---AHQVALQLGPDGLVISL---RE 123 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292 +D S+ P P ++ + I L + I GHTD P NW LS RA Sbjct: 124 AGFYDSGSATPKPSSMGAVGIIAHELYQVPYALRIEGHTDNVPIHTAKFDSNWELSTARA 183 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 + ++L+++ GV+ R+S +G+A + A+ + NRR+DI+V Sbjct: 184 TTMARLLIENFGVAPQRLSA-AGYAQYHPIASNATAAGRAENRRVDIIVLP 233 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72 +++K + W + YADF+T+L AFF+V++ + D ++ Q F Sbjct: 1 MRRKRHESHPNH--ERWLVSYADFITLLFAFFVVLYASSKADLRKQQQFAQSIHSAFTAL 58 Query: 73 GKNLMTA-SKGIFDEQNPPERSS 94 G KG E NPP ++ Sbjct: 59 GLFPENGHGKGPVPEANPPADTA 81 >gi|253702421|ref|YP_003023610.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251777271|gb|ACT19852.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 253 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 111/330 (33%), Gaps = 87/330 (26%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + PN+ W + YADF+T+L A F+ ++ A+ Q + + Sbjct: 1 MARKKEHEKEPNH-ERWLVSYADFITLLFAVFVTLY-----------AMSQTDKKKAEEV 48 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + + F + + ID I Sbjct: 49 LQSMRESFGYSSTSAGAKPTVIDTGSMSVIP----------------------------- 79 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + LT+ +GK D + E Y L ++ K Sbjct: 80 ------SMHRLTQAPRRGKSRGGEKDFRATKAAIEAYLLKVGAQAK-------------- 119 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 V T+ G+++S+ + FD S+ ++ +L+ + Sbjct: 120 ------------------VSVSVTQRGLVVSL---KEAGFFDSGSATLKQDSYALLKDVV 158 Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314 L+ + + + GHTD P + NW LS RA + Q L K S +IS +G Sbjct: 159 SSLSSYSNGLRVEGHTDNMPISSASFPSNWELSTARATNVLQYLTKQSDFDPYKISA-AG 217 Query: 315 FAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 + +R + NRR+DI++ Q Sbjct: 218 YGEYRPVADNSEAEGRGKNRRVDIVLLSEQ 247 >gi|288942520|ref|YP_003444760.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288897892|gb|ADC63728.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 279 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 99/321 (30%), Gaps = 73/321 (22%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 D P W +AD M+++M FF+++ + D K + Sbjct: 7 CPDPPAGAPEWMATFADLMSLMMCFFVLLLSFSEMDVIKYKQVAGSLKAA---------- 56 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + I L Q+ + + + Q ++ Sbjct: 57 -----------------FGVQRDIPAQEDPLGTSIIMQEFSPAQPQPTVINEVRQQTTDE 99 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K L +D QD A+ + Sbjct: 100 SKRFLEILDPAVEDA-----------------------------------QDKAEDLKQE 124 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L +A+ +++ T ++I I R F +S+ L KI E L Sbjct: 125 LKKEIAEGLIE---INTIDDQVVIRI---REKGSFPSASARIDTPFKAALMKIAEALNQV 178 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320 I I GHTD P + NW LS RA + + + G++ +R+ I +R Sbjct: 179 EGRILIAGHTDDVPIETLEFPSNWVLSAARAAAVAHTMTQVGGIAPERVE-IRAHGDNRP 237 Query: 321 KIASDPMNSA--NRRIDILVE 339 ++ + NRR++I+V Sbjct: 238 VDTNETTDGRANNRRVEIIVL 258 >gi|146306332|ref|YP_001186797.1| flagellar motor protein MotB [Pseudomonas mendocina ymp] gi|145574533|gb|ABP84065.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 296 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 110/320 (34%), Gaps = 59/320 (18%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 ++ + +W + +AD M++LM FF+++ + D K I +K Sbjct: 4 PEEEARAMPAWVMTFADLMSLLMCFFVLLLSFSEIDAQRFKQIAGEL----------AKA 53 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 ++ P D+ ++ Q+ Q Q + Sbjct: 54 FGVQREVPALEVPLGTSPVFDKFSPGKPEPTEVQEIRQQTTTQ-----------DPQLDT 102 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + + + + S+ + LS+ ++ ++ ++R+ Sbjct: 103 LRGDAEAELQARAEAQVDQQVRDSVAALQQLLQGELSEGRLQLLEERRRI---------- 152 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 I+ F S+ P +L + E+L Sbjct: 153 -------------------------ILRVEERGSFASGSAELTPAFEDMLLGMSELLVEI 187 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +++ GHTD P R NW LS RA + L+ + E + ++ GFA R + Sbjct: 188 PGTLTVEGHTDDVPISTARFRSNWDLSAARASAVANALLLNPALEPQRLEVKGFADTRPR 247 Query: 322 IASDPM--NSANRRIDILVE 339 +A+D + NRR++I+++ Sbjct: 248 VANDSAQQRALNRRVEIIID 267 >gi|295706900|ref|YP_003599975.1| putative flagellar motor channel protein [Bacillus megaterium DSM 319] gi|294804559|gb|ADF41625.1| putative flagellar motor channel protein [Bacillus megaterium DSM 319] Length = 203 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 9/187 (4%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETT 220 + N++ + L+ LA K + I + + G + +N ++ V+ + Sbjct: 20 SMSSVDNQKFQTVVNSLTSGGSLASVEKSQQSQKLDNILAKVQGYLKENKLQHVITAKRD 79 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G+++ + +Q +F+ + L + L ++G + + I + GHTD P Sbjct: 80 ERGVVLILQEQ---VLFETGQADILKKGTPFLDELGRLFSTIPNDIKVEGHTDNRPIHTY 136 Query: 281 AR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 NW LS RA + L +S +R + G+ + + + + NRR++I Sbjct: 137 RYPSNWELSAARASGVIRYLTNHFSLSANRFEAL-GYGDTKPLVPNTSNDNLQKNRRVEI 195 Query: 337 LVEDRQG 343 ++ D + Sbjct: 196 IISDPEA 202 Score = 42.6 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 23/41 (56%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 + +AD +T+++ FF++++ +++ D+ + + G Sbjct: 1 MVTFADLVTLILVFFILLFSMSSVDNQKFQTVVNSLTSGGS 41 >gi|118581870|ref|YP_903120.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504580|gb|ABL01063.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379] Length = 271 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 Q + + S Q S K L S K E +P Sbjct: 36 AMSQSDKKKTEEVMQSIQQSFGMVQAGAPSPKMNILPSSQMSITPSIKPEVSVMPGSRGA 95 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + + +K + +D + SS + LV V TR G+++S+ + FD Sbjct: 96 RGM-VKTRATEKDFRQIKSSIEAYLVKQGAQSKVNLTITRRGLIVSL---KEAGFFDSGQ 151 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM 300 + P ++ I EV+ + + + GHTD P + NW LS RA + + L+ Sbjct: 152 AQIKPTAYELINTIAEVMTQYSNPLRLEGHTDNVPINTSQFPSNWELSTARAVNGLKYLI 211 Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 ++ GV D+I ++G+A R + + NRR+D+++ +G Sbjct: 212 RNFGVDPDKI-SVAGYAEFRPMADNATPEGRAKNRRVDLVMLSNEG 256 >gi|295399258|ref|ZP_06809240.1| OmpA/MotB domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110141|ref|YP_003988457.1| OmpA/MotB domain protein [Geobacillus sp. Y4.1MC1] gi|294978724|gb|EFG54320.1| OmpA/MotB domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215242|gb|ADP73846.1| OmpA/MotB domain protein [Geobacillus sp. Y4.1MC1] Length = 254 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 10/207 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q N+ + + E ++ + +K + + K+ L ++ + Sbjct: 47 AQIAQSFNAAFTGGTGVLEFQAPIEPEPLPSQPKQQNDQQNDNKKKIDKQEKEELHEVQE 106 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI + + V + + + T G+ I+I+ N +FD S+ P+ + ++I + Sbjct: 107 KIDTYI---VNERLNGKLKTSLTEEGLAITIL---NDILFDSGSAEVRPQDRQLAKEISQ 160 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + I I GHTD P N NW LS+ RA + ++L+++ + R+ G+ Sbjct: 161 MLVMNPPRNIIISGHTDNVPIHNAQFSSNWELSVMRAVNFMKLLLENPKLDPRLFSAKGY 220 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 + ++D NRR++IL+ Sbjct: 221 GEFKPVASNDTPEGRMKNRRVEILILP 247 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 6/135 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + SW I Y+D +T+L+A F+V++ + D I Q FN Sbjct: 1 MNKKKKQKHGEHINESWLIPYSDLLTLLLALFIVLFASSQIDQKKFAQIAQSFNA----A 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T G+ + Q P E ++ +N KI +++ ++ E Y+ N Sbjct: 57 FTGGTGVLEFQAPIEPEPLPSQPKQQNDQ--QNDNKKKIDKQEKEELHEVQEKIDTYIVN 114 Query: 137 SQQSEHCKNSLTRDS 151 + + K SLT + Sbjct: 115 ERLNGKLKTSLTEEG 129 >gi|146277438|ref|YP_001167597.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555679|gb|ABP70292.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 367 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 35/345 (10%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78 P +W +AD T LMAFF+++ D+ + + T Sbjct: 25 PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 84 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS- 137 + + + PP D D ++ + + + + S Sbjct: 85 SGNTVIELGMPPADPDGLHPDERSDMGGSEEPGGDAPERVAEALREALEQGELQVRSEDG 144 Query: 138 ---------------------QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + P Sbjct: 145 SVVIELPGKQAAQALAQALAEAAGVGTGPLPEPQTTAQPRPEPQAGPAGPGEGTGAPAGP 204 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 P+ E+ A+++ R + ++ + L VA+ +VK E + +S+ Sbjct: 205 PVGGEQGAALRKSVRAELDTLRLRNALDREVAEGLVK---VEQMDGKVFVSL---GAGGS 258 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F S + + V+ +I E H I++ GHTD P A RDN L+ RA S Sbjct: 259 FTSGSDVLSEDARAVMSRIAEATQHPERTITVTGHTDNVPVAGGAFRDNIALAAGRAASV 318 Query: 296 YQVLMK-SGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L+ GV RI+ +S G A++ + NRRI+I + Sbjct: 319 VRELVATGGVDPGRITAVSRGEFDPVADNATEAGRTQNRRIEIEI 363 >gi|254491010|ref|ZP_05104191.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224463523|gb|EEF79791.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 263 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 115/324 (35%), Gaps = 68/324 (20%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K +N+ + +AD MT+LM FF+++ + D K + + Sbjct: 2 KSRSQKPVDNVPRYMGTFADLMTLLMCFFVLLVAMAEIDALKFKMVVRSM---------- 51 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 ++ +R ++ ++ + + K + S + Sbjct: 52 -----EDAFGVQRPEPDEPEIIMGTSVIKQT-----------------------FSTAAP 83 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E +++ + S+ KD K D A+ R+Q L + Sbjct: 84 KETPLSTVRQASDSDKDALKVED---------------------AAVYEAARMQTLMDDL 122 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + S + +++ + E I+I I ++ + F + + VL I E L Sbjct: 123 TKKFSTAINNDL---LSLEQLPDRIMIRINEKTS---FTSGGAKLKTAFLPVLSLIAETL 176 Query: 260 AHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A + + GH+D P R+ R NW LS RA S L++ +I +A Sbjct: 177 AELDDTFIVSGHSDNVPLRSGNYRSNWELSGARATSVVHALLRHPKLVPSQFRIEAYADT 236 Query: 319 RLKIASDPMNSA--NRRIDILVED 340 + ++D NRR++I + + Sbjct: 237 QPVESNDTAAGRATNRRVEIGIVN 260 >gi|224368748|ref|YP_002602909.1| MotB1 [Desulfobacterium autotrophicum HRM2] gi|223691464|gb|ACN14747.1| MotB1 [Desulfobacterium autotrophicum HRM2] Length = 269 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 10/211 (4%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 +F +S +QQ + + S G T + + P +KI + Sbjct: 49 LFAMSTTQQETFKELVESLRSALGVQSVPETGTREGLTMHAVPSEEPTDNQKIDELGG-- 106 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ ++I+S + ++ N + G++ + TG++I++ D +F +I + Sbjct: 107 MVEKEIREIASEVREMILFNKLGGLVNVSESETGVVITMSDL---LLFSAGEAILSEKGA 163 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L K+ VLA + ++GHTDASP NW LS RA + ++L+ SG+ Sbjct: 164 DILNKVTAVLAQLAYHVKVKGHTDASPISTGRYPSNWELSASRAAAVVKLLVASGLDPS- 222 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDIL 337 + G+A +R +D + NRR++I+ Sbjct: 223 LISAEGYAQYRPVATNDTEKGRARNRRVEIV 253 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 1/113 (0%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 W +AD +T+LM FF++++ ++ T +T K + + G + Sbjct: 29 PEWMATFADLVTLLMCFFVLLFAMSTTQQETFKELVESLRSALGVQSVPETGTREGLTMH 88 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 S+ D + + V+ +I + + L N + L N +SE Sbjct: 89 AVPSEEPTDNQKIDEL-GGMVEKEIREIASEVREMILFNKLGGLVNVSESETG 140 >gi|239827803|ref|YP_002950427.1| flagellar motor protein MotB [Geobacillus sp. WCH70] gi|239808096|gb|ACS25161.1| OmpA/MotB domain protein [Geobacillus sp. WCH70] Length = 251 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 86/210 (40%), Gaps = 10/210 (4%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + ++ + S G + + ++K + K+ L + Sbjct: 42 DQKKFQQIARSFNTALAGGTGVLDFESPIEPETPPSPSKQEHKQQQKNSNKEDKEELHAV 101 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +KI + ++ ++ + T G+ I+I+ N +FD S+ P+ + ++I Sbjct: 102 QEKIDTYIAE---KHLNGKLQTSLTDEGLAITIL---NDILFDSGSAEVRPKDRKLAKEI 155 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++L + I I GHTD P N NW LS+ RA + ++L+++ + R Sbjct: 156 SQLLVMNPPRNIIISGHTDNVPIHNAQFASNWELSVMRAINFMKILLENPELDPRWFSAK 215 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDR 341 G+ + ++ NRR++IL+ + Sbjct: 216 GYGEFKPVAPNNTPEGRMKNRRVEILILPK 245 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Query: 28 NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 + SW I Y+D +T+L+A F+V++ + D + I + FN + G+ D + Sbjct: 12 HINESWLIPYSDLLTLLLALFIVLFASSQIDQKKFQQIARSFN----TALAGGTGVLDFE 67 Query: 88 NPPERSSQNKIDLSIDEHITKNSV 111 +P E + + KNS Sbjct: 68 SPIEPETPPSPSKQEHKQQQKNSN 91 >gi|323945384|gb|EGB41438.1| OmpA family protein [Escherichia coli H120] Length = 148 Score = 130 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 55/97 (56%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 +L ++ V I I GHTDA ++N +NW LS DRA SA +VL ++G+ E Sbjct: 18 FFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPE 77 Query: 307 DRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 D++ ++S A L A +P ++ NRRI+I+V + Sbjct: 78 DKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSA 114 >gi|83647833|ref|YP_436268.1| flagellar motor protein MotD [Hahella chejuensis KCTC 2396] gi|83635876|gb|ABC31843.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 260 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 109/325 (33%), Gaps = 80/325 (24%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++K+ + +N W + YAD F +++ E + + L Sbjct: 1 MRKRRRNREESHNHERWLVSYAD-------FITLLFAFFVVMYSVSSVNEGKYKVLSETL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +G+F+ QR N I Sbjct: 54 ----EGVFNAT-------------------------------------QRSVNPIQVGQQ 72 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + +D T E++ +RL+++A Sbjct: 73 TAAPPQSDAPAIQPFNSPEDPAGETSEEQAG----------------------ERLREIA 110 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + L GL+ + V I +S+ RN +F+ ++P+ ++ I Sbjct: 111 NRFNYRLKGLIGQGM---VSINENDNWIELSL---RNNLLFNSGDAVPVDAAFNLIDGIA 164 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L I + G TD P R+ A NW LS R+ + ++L+ GV R++ + G+ Sbjct: 165 GILKDYPNAILVEGFTDNVPIRSSAYPSNWELSSARSAAVARLLIIGGVDPRRLAAV-GY 223 Query: 316 AHHRLKIASDP--MNSANRRIDILV 338 ++ +D NRR+ +LV Sbjct: 224 GEYQPVARNDTSEGRQRNRRVVLLV 248 >gi|121533429|ref|ZP_01665257.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] gi|121307988|gb|EAX48902.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] Length = 262 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L +L K++ ++ N+ + T G++I I D +F + PE++ Sbjct: 107 QLIELKKQLDRYIAE---SNLAGDIQTALTDDGLMIRIKDT---ALFASGRAELKPESLR 160 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA-YSAYQVLMKSGVSEDR 308 + +I ++A ++ + + GHTD P NW LS RA +L ++ + +R Sbjct: 161 LGTEIARMIAPLSQRVIVAGHTDNMPINTPEFPSNWDLSTKRALNFMKYMLSQAEIKPER 220 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 I +SG+ +R ++D + NRR+++L+ Sbjct: 221 I-SVSGYGEYRPVASNDTEEGRAKNRRVEVLIMR 253 >gi|255527289|ref|ZP_05394169.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7] gi|255509027|gb|EET85387.1| OmpA/MotB domain protein [Clostridium carboxidivorans P7] Length = 182 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 + + V E G+++S+ D F+ + + + L +IG++L + Sbjct: 7 KNGMQNSVTTEVDERGLVVSLRDT---LFFETGKAEVIAASQGKLVEIGKILNQLDNTMR 63 Query: 268 IRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IAS 324 I GHTD P N NW+LS RA + ++L+ +GV ++S ++ + +R ++ Sbjct: 64 IEGHTDNVPIHNEQFSDNWQLSSARALNVTELLIANGVPPKKLSSVA-YGEYRPVLDNST 122 Query: 325 DPMNSANRRIDILVEDRQ 342 + + NRR+DI+V + Sbjct: 123 EDGRARNRRVDIIVVSNK 140 >gi|302873043|ref|YP_003841676.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|307688801|ref|ZP_07631247.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|302575900|gb|ADL49912.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B] Length = 256 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 80/199 (40%), Gaps = 11/199 (5%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T S L L+ + + S E ++L + +++ ++ Sbjct: 56 TSPSGGAGVLDGGQGLDMATLSQAVKDAASKSAELDYEKLEAEKLTKVKEQVDKLIAE-- 113 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 + G++I++ D FD + + L + ++L+ + Sbjct: 114 -SELNGSATTAIEERGLVITVKDN---LFFDSGKATVKEQYKRQLNALSKILSSIDNYVR 169 Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IA 323 + GHTD P + NW+LS RA + ++ G++ +R+ + G+ +R A Sbjct: 170 VEGHTDNVPIKTPYFNSNWQLSSIRASNVVEIFATECGLNPNRLLPV-GYGEYRPIATNA 228 Query: 324 SDPMNSANRRIDILVEDRQ 342 ++ +ANRR+DI++ + + Sbjct: 229 TEEGRAANRRVDIVILNSK 247 >gi|149201621|ref|ZP_01878595.1| flagellar MotB protein [Roseovarius sp. TM1035] gi|149144669|gb|EDM32698.1| flagellar MotB protein [Roseovarius sp. TM1035] Length = 383 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 57/362 (15%), Positives = 115/362 (31%), Gaps = 46/362 (12%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-----GKNLM 77 P +W +AD T+LMAFF+++ + K + + +M Sbjct: 20 PKCPPKGAPAWMATFADIATLLMAFFVLILSFAEFNQPKFKMVAGSLSMAFGVQRQVPVM 79 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 KG S + + + + T+ ++ E Sbjct: 80 EQPKGTTILDLSFSPSPEMSVTEQMTQDTTETEQPEIQRPVTEEDGKGAAEGEGADAPGQ 139 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLE-------------------KSINKEENYFLPPL 178 ++ +L + G+ +S + E + ++ Sbjct: 140 SEAREMAEALQEALQSGQVKVESREGEVVMTFDAPDAQSLPGQLTEAAEALQQAAEATGQ 199 Query: 179 SKEKILAMKRKKRLQDLAKKI-----------SSTLSGLVADNIVKGVLFETTRTGIL-I 226 S ++ +Q++A+ + S S +AD ++ L + G++ + Sbjct: 200 STSDVMMQGLADNIQEMAEVMQGKAEAETQAGQSARSAAIADAQLQVALQQEIGEGLVSV 259 Query: 227 SIIDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--R 278 + + F + E V+ ++ I + GHTD+ P Sbjct: 260 EQREDKVVITVGEGGAFPSGGADLTDEARDVMARLAFAAMGEASEIVVTGHTDSVPLGGA 319 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + RDNW L+ RA S + L SG+ E + +D + NRRI+I Sbjct: 320 SPYRDNWGLAAARASSVVRELSGSGLIEPERLTATSRGESLPVAENDTAAGRAQNRRIEI 379 Query: 337 LV 338 + Sbjct: 380 EI 381 >gi|1170998|sp|P46827|YTXE_BACME RecName: Full=Uncharacterized 24.6 kDa protein in ccpA 3'region; AltName: Full=ORF2 gi|415666|gb|AAA22297.1| homologue to motB; ORF2; putative [Bacillus megaterium] Length = 218 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETT 220 + N++ + L+ LA K + I + + G + +N ++ V+ + Sbjct: 35 SMSSVDNQKFQTVVNSLTSGGSLASVEKSQQSQKLDNILAKVQGYLKENKLQHVITAKRD 94 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G+++ + +Q +F+ + L + L ++G + + I + GHTD P Sbjct: 95 ERGVVLILQEQ---VLFETGQADILKKGTPFLDELGRLFSTIPNDIKVEGHTDNRPIHTY 151 Query: 281 AR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 A NW LS RA + L +S +R + G+ + + + + NRR++I Sbjct: 152 AYPSNWELSAARASGVIRYLTNHFSLSANRFEAL-GYGDTKPLVPNTSNDNLQKNRRVEI 210 Query: 337 LVEDRQG 343 ++ D + Sbjct: 211 IISDPEA 217 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 +K++ W + +AD +T+++ FF++++ +++ D+ + + G Sbjct: 1 MKRRRKRYSA--QSPKWMVTFADLVTLILVFFILLFSMSSVDNQKFQTVVNSLTSGGS 56 >gi|311031291|ref|ZP_07709381.1| flagellar motor protein MotS [Bacillus sp. m3-13] Length = 254 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 11/187 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + SIN E +++ + + + LQ+L ++ + L+ +++ V+ Sbjct: 69 EHPTDFSINTESTNNQEDVAENEEQTQENEDSLQELLVEVQTFLAE---NDLEDVVVANR 125 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T GI++ + +++ + + LP L K+G +L ++ + GHTD P Sbjct: 126 TERGIVLVL---EEKVLYETAEARILPIAHPFLDKVGTLLTKIPNLVKVEGHTDNRPIST 182 Query: 280 I-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 NW LS RA S + L+ + + +R + G+ R + + + NRR++ Sbjct: 183 EKFPSNWELSAARASSVIRYLVDAHDLDPERFIAV-GYGDTRPIVENTSNANYQKNRRVE 241 Query: 336 ILVEDRQ 342 I++ D Q Sbjct: 242 IVISDPQ 248 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + ++D +++ FF++++ ++ D KA+ + F Sbjct: 1 MKRRKKKMSVESGAPKWMVTFSDLFMLVLVFFILLFSMSQIDLVKFKAVAESFKQV---- 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 I D NP ++ D SI+ T N D+ ++ L+ + + Sbjct: 57 -----NILDY-NPSAVPFEHPTDFSINTESTNNQEDVAENEEQTQENEDSLQELLVEVQT 110 >gi|121533592|ref|ZP_01665419.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] gi|121307583|gb|EAX48498.1| OmpA/MotB domain protein [Thermosinus carboxydivorans Nor1] Length = 257 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++I S + V D +GV F + G+ I +D +FD + P+ + +L + Sbjct: 98 REIISQIQQRVKDP--QGVGFTVSERGLTIRFLDS---ILFDLGRAELRPDALPLLDAVA 152 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISG 314 + L + I + GH D P NW LS R+ + + + G+ R+S + G Sbjct: 153 DALKQTDNYIRVEGHADNLPINTAQFPSNWELSAARSIAVTRYFIDKHGLEPRRLSSL-G 211 Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340 + +R + + + NRR+DI++ Sbjct: 212 YGEYRPLYPNTSEANRAKNRRVDIVILR 239 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + W + YAD +T+LM FF+VM+ +++ D A++ + + IF Sbjct: 14 HDATGMMRWLLTYADLITLLMVFFVVMYAMSSADQKKFNALKASLAAALRTEGAGTNLIF 73 Query: 85 D-EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + N P N D + + + Sbjct: 74 EYSGNRPFNQVVNPEGTEKDLETFREIISQIQQRVKDPQGVG 115 >gi|89056663|ref|YP_512114.1| chemotaxis protein MotB [Jannaschia sp. CCS1] gi|88866212|gb|ABD57089.1| chemotaxis protein MotB [Jannaschia sp. CCS1] Length = 277 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 2/187 (1%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GV 215 L + S+ E L + A + + L ++ + V ++ + + Sbjct: 91 LSQDGSGATSLRPTEGRQALGLEGTEHDAEQEEANLTEIEGALMGEGGDSVLSDLARPHI 150 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 T G++I + + P+FD + +P P + + ++ +++ H A Sbjct: 151 ETRLTDEGLVIEVFSRPGQPIFDPDTGLPQPWLEELTVSMADLFGTVLNRVAVEAHIAAE 210 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 P W+ + +RA +L G++ RI++++G + + S P+ N RI+ Sbjct: 211 PLVRTTESGWQRTTERAQIIRALLEDGGLNAQRIARVTGHSDREPFV-SPPIAPRNDRIE 269 Query: 336 ILVEDRQ 342 +++ + Sbjct: 270 VILLRER 276 >gi|134094541|ref|YP_001099616.1| flagellar motor protein MotD [Herminiimonas arsenicoxydans] gi|133738444|emb|CAL61489.1| putative flagellar motor protein MotD [Herminiimonas arsenicoxydans] Length = 261 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 11/205 (5%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKK 198 S + + + K L SI P + A KR+K R+ ++A+ Sbjct: 49 SNSLGIAFSGITPKAPALKDPAPSSPSILPLPMPAHSPSQRANDAATKREKARMTNIARD 108 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I ++ L+ + V T G+ + I + +F + ++ L+ + EV Sbjct: 109 ILKAMAPLIREG---KVRVTQTNRGVSVEI---NASVLFAPGEARLSAQSEKALRAVAEV 162 Query: 259 LAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I + GHTD P N NW LS RA S ++ ++SG++E R+ + G Sbjct: 163 LNKVDNDIQVEGHTDNVPINNAMFPSNWELSAVRASSVVRLFLESGMNEKRLVAM-GHGA 221 Query: 318 HRLKIASDPM--NSANRRIDILVED 340 ++ +++ NRR+ +++ Sbjct: 222 NQPVDSNETTEGRLRNRRVQLMILS 246 >gi|332702472|ref|ZP_08422560.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552621|gb|EGJ49665.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 239 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 15/186 (8%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLA--KKISSTLSGLVADNIVKGVLFETTR 221 ++ + P +++ L + L A + I S L + V F+ Sbjct: 53 DEIAGSMQTALKPSEARKSDLREAVTRELDRQATLEHIISDLQQRFRGEAAEHVQFQLRP 112 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNI 280 + I++ FD S+ P+ + +L+KIG VL +++ GHTD P Sbjct: 113 GAVAINLH---GPAFFDSGSAELTPDAVRMLRKIGVVLVGVPYHLTVEGHTDNVPIQTGA 169 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNS-ANR 332 NW LS RA + L+ GV D + KI G A R + ++ P N NR Sbjct: 170 FDSNWELSALRATRVARFLISQGVRPDNM-KIVGLADTRPLLPNNDASGAALPENQTRNR 228 Query: 333 RIDILV 338 R+ ILV Sbjct: 229 RVVILV 234 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 20/61 (32%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 K W + AD MT+L+ FF+++ I+ D I K Sbjct: 9 KLRRRRMDQEGGEDWHLSLADMMTLLLCFFVLLASISQVDYTLFDEIAGSMQTALKPSEA 68 Query: 79 A 79 Sbjct: 69 R 69 >gi|309388829|gb|ADO76709.1| OmpA/MotB domain protein [Halanaerobium praevalens DSM 2228] Length = 282 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 9/242 (3%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 + +N + G + + + D EK + + + Sbjct: 1 MPRNKKNKSDGDSGGGSPAWMTTFGDMMTLLLVFFVLLFSFSSMDVEKFQGFISALQNQL 60 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGI 224 + + + + + + + +++ + + +N+ V E R G+ Sbjct: 61 GVLQGGKTITEDPNIDAGNLGQDYAQAPENIQQVMKQIDNYIENNNLSDKVNVENKRKGL 120 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RD 283 +IS+ +++ + + VL KI E+L I I GHTD P R Sbjct: 121 VISLT---GEILYELGKADIREQGKEVLTKISEILKEIPNDIMIEGHTDDLPIRTAEFPS 177 Query: 284 NWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 NW LS RA + + L++ R+S +G++ +R ++ + NRR++++V + Sbjct: 178 NWELSTARAVNVIKYLIEEKDFDPARLSA-AGYSEYRPVATNNSTEGRAENRRVEVVVLN 236 Query: 341 RQ 342 Q Sbjct: 237 SQ 238 >gi|15893597|ref|NP_346946.1| chemotaxis motility protein B, gene motB [Clostridium acetobutylicum ATCC 824] gi|15023148|gb|AAK78286.1|AE007545_3 Chemotaxis motility protein B, gene motB [Clostridium acetobutylicum ATCC 824] gi|325507717|gb|ADZ19353.1| Chemotaxis motility protein B, gene motB [Clostridium acetobutylicum EA 2018] Length = 256 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 11/197 (5%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + GK + + D + + + +L+D+ KKI ++ + Sbjct: 56 NGASGKTVIGNQDAVDIKSTSSYVTQEASKQSASAEKAEENKLKDVKKKIDQYVNQ---N 112 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + V G+++SI+D MFD + P+ L +IGE+L I I Sbjct: 113 GMQGSVSTNLQEKGLVVSIVDT---LMFDTGRAEVKPDFQKKLVEIGEILKTIDNYIRIE 169 Query: 270 GHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPM 327 GHTD +P N N L R+ + + + S + ++ +S +A R ++ Sbjct: 170 GHTDNTPISNSQYASNIELGSARSNNVEHLFIDVSKIPVTQMYTVS-YADTRPVADNNSE 228 Query: 328 N--SANRRIDILVEDRQ 342 + NRR+DI++ + + Sbjct: 229 AGKARNRRVDIVILNSK 245 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 1/117 (0%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + P N W + Y+D +T+LMAFF+VM+ + + I Q G N + Sbjct: 2 KRKKHEEPENSERWLLTYSDLITLLMAFFIVMYASSTVSKEKFAQIAQSLK-VGFNGASG 60 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 I ++ +S+ + + + + + KK+ + N + Sbjct: 61 KTVIGNQDAVDIKSTSSYVTQEASKQSASAEKAEENKLKDVKKKIDQYVNQNGMQGS 117 >gi|297538888|ref|YP_003674657.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297258235|gb|ADI30080.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 272 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 10/156 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + ++ + + +S+ LS L+ D V GI I I D +F S+ Sbjct: 104 REREAMTKMGIDLSNKLSPLINDG---KVRVMQNNRGIRIDINDS---LLFTPGSAELAA 157 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVS 305 VL +I ++ + +I + GHTD N + NW LS RA S ++L +GV+ Sbjct: 158 AASTVLSEIAPMIKDNDRLIQVEGHTDNIAIHNDLFYSNWELSAVRASSVVRMLSDTGVA 217 Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 E R+S + GF + ++ + NRR+ I++ Sbjct: 218 ESRLSAL-GFGSTQPITENNTELGRAKNRRVSIMIL 252 >gi|332799185|ref|YP_004460684.1| OmpA/MotB domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696920|gb|AEE91377.1| OmpA/MotB domain protein [Tepidanaerobacter sp. Re1] Length = 226 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 9/180 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 +E + E F+ L ++R +L + + ++ ++ + GV Sbjct: 43 IEGGMTLSEGDFIEAGDAGSFLISAEEQREFEL---LEEKIQKIIDEDNIGGVQVNLDER 99 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIA 281 G+++ ++ +FD + + +L K+ +L S I I GHTD P + Sbjct: 100 GLVVRFVE---GVLFDSGKADIRNDAKEILDKLAPLLIESHRQIRIEGHTDNLPIHTSEF 156 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 NW LS RA + + +++ I +G++ +R +D + NRR+DI++ Sbjct: 157 PSNWELSTARAVNVVKYMIERHNLSPYIISAAGYSEYRPIAPNDSEKNRALNRRVDIIIL 216 >gi|23099999|ref|NP_693465.1| motility protein B [Oceanobacillus iheyensis HTE831] gi|22778230|dbj|BAC14500.1| motility protein B (flagellar motor rotation) [Oceanobacillus iheyensis HTE831] Length = 257 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 48/328 (14%), Positives = 103/328 (31%), Gaps = 83/328 (25%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + SW + YAD +T+L+A F+V++ ++ + + + F Sbjct: 1 MSRRGKKKSQSHMDESWLLPYADLLTLLVALFIVLFAMSDINIQKYEQLASVFR---SEF 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A G+ D Q P Sbjct: 58 SNAGSGVLDHQEIPVPP------------------------------------------- 74 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 E + DSE+ + ++ E + + +E L + L D Sbjct: 75 ---PEQEEVDENEDSEEQDEQLSKSESELRDLQALQTQINHFIQEHELTEQLGTELTD-- 129 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 G++I+++ N FD S+ + + + Sbjct: 130 -------------------------EGLMITLV---NEVFFDSGSAEVKETSKEIANDVS 161 Query: 257 EVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + I GH D P NW LS+ RA + +++++ + + G Sbjct: 162 NLLYTEPPHQVVISGHADDVPIETEEYNSNWELSVSRAINFMTLILENEELDPTLFSAKG 221 Query: 315 FAHHRLKIASD--PMNSANRRIDILVED 340 + + + + + NRR+++L+ Sbjct: 222 YGEFQPIVPNTSAENRAKNRRVEVLILP 249 >gi|119470009|ref|ZP_01612814.1| putative chemotaxis protein [Alteromonadales bacterium TW-7] gi|119446719|gb|EAW27992.1| putative chemotaxis protein [Alteromonadales bacterium TW-7] Length = 319 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 112/324 (34%), Gaps = 65/324 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++ + W + YAD+MT++ AFF+VM+ I ++ + + Sbjct: 4 RRFGRSAHKNQHTERWLVSYADYMTIMFAFFVVMYAIAINKEENFQILSDSLEQ------ 57 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 +FD+ +D + I + Sbjct: 58 -----VFDKSARVYSQQGTGVDGTG----------------------------ILTDRVT 84 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + E E+G +L +I ++ K L L Sbjct: 85 PEDELLYGESINKEEQGPELLDGQSETSNIQQKY----------------LGKPLDSLLT 128 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ S L + D E + ++I + + +F S++ V++ + + Sbjct: 129 KLQSALIDEIRDGEAN---LELNQDWLIIELS---SGMLFSSGSAVAHSRAKQVVKIVKD 182 Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++A I +RG+TD +N I R NW LS+ RA S L G++ R+ I G+ Sbjct: 183 IIAPVDNYIRVRGYTDDETIKNEIFRSNWELSVARATSILVELEALGINSARM-AIEGYG 241 Query: 317 HHRLKIASDP--MNSANRRIDILV 338 + +D + NR++ I + Sbjct: 242 QYSPFAPNDTDEGRAENRKVVIAL 265 >gi|212638649|ref|YP_002315169.1| flagellar motor protein MotB [Anoxybacillus flavithermus WK1] gi|212560129|gb|ACJ33184.1| Flagellar motor protein B [Anoxybacillus flavithermus WK1] Length = 251 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 7/184 (3%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L +E + + +K K+ ++L K S + + + + T Sbjct: 68 LSPVEREEVDSVIKDSPNQKPYVKISKEEYEELKKIQSKFNEYVKTNQLSGELSVAMTEE 127 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G+L++I N +FD S+ P+ V +KI +L + I I GHTD P N Sbjct: 128 GLLVTI---ANDVLFDSGSADIKPQYRNVAKKISNLLVMNPPRNIVISGHTDNVPINNAK 184 Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 NW LS+ RA + ++L+++ + ++ G+ + ++ + NRR++IL+ Sbjct: 185 FASNWELSVMRAVNFMKLLLENTKLDPQLFSAKGYGEFKPIASNATPEGRAKNRRVEILI 244 Query: 339 EDRQ 342 ++ Sbjct: 245 MPQE 248 Score = 41.4 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SW I YAD +T+L+A F+V++ + D I + FN ++ T G +P E Sbjct: 17 SWLIPYADLLTLLLALFIVLFASSQIDSKKFLEIARAFN----SVFTGGTGALQYLSPVE 72 Query: 92 RSSQNKI 98 R + + Sbjct: 73 REEVDSV 79 >gi|148266090|ref|YP_001232796.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146399590|gb|ABQ28223.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 258 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 11/178 (6%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +++ K + +K + + I + L A N V E TR G+++S+ Sbjct: 82 RQQTLPPKQAQYGKTRSHAEEKDFKAIKAAIEAYLLKNDAQN---KVSVEITRRGLVVSL 138 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRL 287 + FD S+ + +L + E +++ T I + GHTD P + NW L Sbjct: 139 ---KEVGFFDSGSATVQQNSYGLLAHVAESVSNYTNPIRVEGHTDNVPISSHTFPSNWEL 195 Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 S RA + Q L++ D+IS +GF HR + NRR+DI++ + Sbjct: 196 STARATNLVQYLIRYYEFQPDKISA-TGFGEHRPIADNSTAEGRGKNRRVDIVLLSTE 252 >gi|221635437|ref|YP_002523313.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium roseum DSM 5159] gi|221157647|gb|ACM06765.1| chemotaxis protein MotB (Motility protein B) [Thermomicrobium roseum DSM 5159] Length = 237 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 8/130 (6%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 +G E T GI+I + D +F + PE VL I ++ I + GHT Sbjct: 104 QGAEVELTSEGIVIHLSD---AILFPPGQAELRPEAQRVLDGIAAIIEPLPNPIRVEGHT 160 Query: 273 DAS-PFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MN 328 D++ P DNW LS RA + + L +G+ R+S +G+ R + +++ Sbjct: 161 DSTPPPPGSYPDNWELSAMRAVNTVRYLTDVAGLPPQRLSA-AGYGEFRPRASNETVEGR 219 Query: 329 SANRRIDILV 338 NRR+DI++ Sbjct: 220 RKNRRVDIVI 229 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 5/167 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-----F 72 +++ + NL W I YAD +T+L+ FF+VM+ I+ D + + Sbjct: 3 RRQRHHEGEHENLERWLITYADLITLLLIFFVVMYSISQADLAKFRQVASSLRAAFNLDV 62 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + + P ++ + + T+ +D + + + + Sbjct: 63 LTAPPPGQSMVTPLEQDPRFNAYLSVRAQVASLFTRLGLDRQGAEVELTSEGIVIHLSDA 122 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 L Q+E + + + + ++ PP S Sbjct: 123 ILFPPGQAELRPEAQRVLDGIAAIIEPLPNPIRVEGHTDSTPPPPGS 169 >gi|332533102|ref|ZP_08408971.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] gi|332037384|gb|EGI73838.1| flagellar motor rotation protein MotB [Pseudoalteromonas haloplanktis ANT/505] Length = 319 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 112/324 (34%), Gaps = 65/324 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++ + W + YAD+MT++ AFF+V++ I ++ + + Sbjct: 4 RRLRHSAAKSQHTERWLVSYADYMTIMFAFFVVLYAIAINKEEQFQILSDSL-------- 55 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + D +Q+ + + Sbjct: 56 ------------------------------EQVFDKSARQYSQQGEGVNGNGILTDRVTP 85 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S+ ++ + + L +D I K L L Sbjct: 86 EQEVLYGESILKEEQGPELLDGQSDTS-----------------NIQQKYLGKPLDSLLI 128 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ S L + D E + ++I + + +F SS+ V++ + + Sbjct: 129 KLQSALIDEIRDGEAS---LELNQDWLIIELS---SGMLFSSGSSVAHSRAKQVVKIVKD 182 Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++A + +RG+TD RN I R NW LS+ RA S L G++ R+ I G+ Sbjct: 183 IIAPVDNYVRVRGYTDDESIRNEIFRSNWELSVARATSILVELEALGINSARM-AIEGYG 241 Query: 317 HHRLKIASDPM--NSANRRIDILV 338 + ++D + NR++ I + Sbjct: 242 QYSPFASNDTEQGRAENRKVVIAL 265 >gi|77359764|ref|YP_339339.1| chemotaxis protein [Pseudoalteromonas haloplanktis TAC125] gi|76874675|emb|CAI85896.1| putative chemotaxis protein [Pseudoalteromonas haloplanktis TAC125] Length = 319 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 110/324 (33%), Gaps = 65/324 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++ + W + YAD+MT++ AFF+V++ I ++ + + Sbjct: 4 RRLRNTTTKSQHTERWLVSYADYMTIMFAFFVVLYAIAINKEEKFQVLSDSIGYV----- 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 D +Q+ + + Sbjct: 59 ---------------------------------FDKSARQHSQQGTGVNGDAILTDRVTP 85 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S+ ++ K L +D I K L L Sbjct: 86 EQEVLYGESILKEEHGPKLLDGQSDTS-----------------NIEQKLLGKPLDSLLA 128 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ S+L + D E ++ ++I + + +F SS+ V++ I + Sbjct: 129 KLQSSLIDEIRDGEAS---LELSQDWLIIELS---SGMLFSSGSSVAQVRAKQVVKIIKD 182 Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++A I +RG+TD N + R NW LS+ RA + L G++ R+ I G+ Sbjct: 183 IIAPVDNYIRVRGYTDNQTIGNEMYRSNWELSVARATAVLVELESLGINSARM-AIEGYG 241 Query: 317 HHRLKIASDP--MNSANRRIDILV 338 + +D + NR++ I + Sbjct: 242 QYSPFATNDTKQGRAENRKVVIAL 265 >gi|91216090|ref|ZP_01253058.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] gi|91185607|gb|EAS71982.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] Length = 319 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 121/309 (39%), Gaps = 17/309 (5%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 L+ F V+ ++ +E F + + T D+ N + + ++++ S D Sbjct: 7 LLIGFTVLNLVGCVSQKKFLELEDEFGTL-QRVNTQLNRKLDDCNSEKTALEDELSYSKD 65 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 + + Q + + N Y + Q S L +S++ ++L + +L Sbjct: 66 RIEVLKTQRDDLTKDLQTTKSTLEKLNDSYDALEQNSSQA---LAANSKQNRELLEQLEL 122 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 ++ EE L L K+ + + LQ L + L + L G Sbjct: 123 KEGALAEEQNRLEQLQKDLQARSNQIEELQSLIADKEQKMISL--KENLSRALTNFEGQG 180 Query: 224 ILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276 + + + D N +F S E ++++G+VLA + ++ + I GHTD P Sbjct: 181 LSVELRDGKVYVSMENKLLFASGSWTVGGEGQKAVKELGKVLADNPDIAVLIEGHTDNVP 240 Query: 277 FRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 + DNW LS RA ++L+K+G + +G + + + NR Sbjct: 241 YGGNGPLTDNWDLSTKRATEVLKLLLKNGKINPQNLTAAGKGEFAPLVPNTTEEGKAKNR 300 Query: 333 RIDILVEDR 341 RI++++ + Sbjct: 301 RIEVVLTPK 309 >gi|320354494|ref|YP_004195833.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122996|gb|ADW18542.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 365 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 32/341 (9%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 D Q + +I+ TP W I ++D M + FL ++ T ++ Sbjct: 34 HDWQQSSQPVFVIEDSFYRSRTPPRPVHWSIAWSDLMMTMFILFLTLFAHLRTHEEIL-- 91 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL--SIDEHITKNSVDLKIGSTNQKK 122 + DE P + + I + ++ D ++ Sbjct: 92 -----------AHGKPNKVADETMPVQTDQTPSALVFHPISQDVSLTIADDAKDIIPPQR 140 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 + + + I + ++ + SL + + ++ P E+ Sbjct: 141 EQEGADVLIRHTLTEEKPQ--PESLAPIPQLPQQPSAPQSANQTAASPAQPLPPAPVPEE 198 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSS 241 + ++ DL+K L + + + E + I + +F Sbjct: 199 KKQEELITKIYDLSKV------ALEKEQLDRFASVELVPDKTMRIILT---GDLLFASGQ 249 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300 + E +V L+KI ++ + +I++ GHTD P +N NW LSL RA + L+ Sbjct: 250 AELTREALVSLKKISALIKTTPYMINVIGHTDDRPVKNARFPSNWELSLARAGRVARFLI 309 Query: 301 KS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 + G+ + +SG++ R + ++ NRR+++++ Sbjct: 310 EDTGLPATQF-SVSGYSSFRPLKPNTSEDNRKINRRVELVL 349 >gi|116330986|ref|YP_800704.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124675|gb|ABJ75946.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 340 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS-INKEENYFLPPLSKE 181 + + F + + T +K + L K + + + + +S+ Sbjct: 120 EESERQGKKFRDLLDNLKDELEQEKTACQKKAEALQKEYEKKVAYLEAIILALNDEISRL 179 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 K L+ +KK L LA + + + L + + + ++I+I D FD S Sbjct: 180 KNLSENQKKELDRLADQANELENKLGDEIKKGQIRLKRFHNRLVINIDD---RISFDSGS 236 Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL 299 + + + L KI E+L + +I I GHTD P R DNW+LS +RA S Sbjct: 237 AELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSVLHYF 296 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++S + + R ++G+ + +++D + NRR+DI+V R Sbjct: 297 LESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVVVPR 340 >gi|150019084|ref|YP_001311338.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149905549|gb|ABR36382.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052] Length = 251 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 12/211 (5%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++S+ NSL G + S N + S + +++L D+ Sbjct: 40 DTKKSKTLANSLKIGFNSGNGEKVIAVADNS-NSVPDVIESTNSDADEDSNAEREKLSDV 98 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK+ ++ + V+ G++IS D F+ + P+ L I Sbjct: 99 KKKVDELVNN---SELKGSVITSIQERGLIISFNDS---VFFNSGQAAIKPDWQNKLISI 152 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKIS 313 ++L I + GHTD NW+LS RA + + L+ G V +R+S + Sbjct: 153 SKILNGIDNYIRVEGHTDNVVINTDYFHSNWQLSAVRASNVVEFLIYQGNVKPERLSSV- 211 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ +R ++ +ANRR+DI++ D + Sbjct: 212 GYGEYRPVKSNTTEEGKAANRRVDIVILDTK 242 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +KK++ + W + Y DF+T++M FFL+M+ I+ D K + G N Sbjct: 1 MKKRMKREKDDT--ERWMLSYLDFITLMMIFFLMMYAISNIDTKKSKTLANSLK-IGFNS 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 K I N + S + ++S + ++ KK+ L NN + Sbjct: 58 GNGEKVIAVADNSNSVPD---VIESTNSDADEDSNAEREKLSDVKKKVDELVNNSELKGS 114 >gi|296878139|ref|ZP_06902154.1| chemotaxis protein MotB [Clostridium difficile NAP07] gi|296430892|gb|EFH16724.1| chemotaxis protein MotB [Clostridium difficile NAP07] Length = 248 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK+ + + +N + V G++IS+ D +FD ++ + + +I Sbjct: 91 KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSREKIIQI 147 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L I + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 148 GKMLNEMNSYIRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 206 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 207 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 237 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 72 Query: 93 SSQNKIDLSID 103 +D Sbjct: 73 PVVEPGSNDLD 83 >gi|45600818|gb|AAS70302.1| motility protein B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 266 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 11/271 (4%) Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L++ K + N ++ I TK+S K +KQ ++ + I L Sbjct: 3 ELLSREKEFRAKDNDLNIEKIKVLENQIAVLKTKSSNKEKELIDENEKQSKKFRDLIDGL 62 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + E ++ + + K +DLE I +SK K L+ +KK L Sbjct: 63 KEDLERERENCQKKTEALQKEYERKISDLESRI----LVLNDEISKLKHLSENQKKELDR 118 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L+ + + + L + + + ++I+I D+ + FD S+ + + L K Sbjct: 119 LSDQANELENKLTDEIKKGQIRLKRFHDRLVINIDDKIS---FDSGSADLKKQILPALDK 175 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 I E+L + +I I GHTD P R DNW+LS +RA S ++S + + R + Sbjct: 176 IKEILGNYPGNLIIIEGHTDNVPIRTKKFSDNWQLSGERALSVLHYFLESKILDPRNFSL 235 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +G+ + +++D + NRR+DI+V R Sbjct: 236 AGYGEFQPIVSNDTPENRALNRRVDIVVVPR 266 >gi|284041524|ref|YP_003391864.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684] gi|283945745|gb|ADB48489.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684] Length = 290 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 104/312 (33%), Gaps = 71/312 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD +T+L+A F+V++ I++ + + ++ Sbjct: 25 WLITYADMLTLLLALFIVLYSISSLNTSKFEEMKTSLR---------------------- 62 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 D + I+ ++ G + + + NI + + + Sbjct: 63 ------DAFSGKIISGGEGIIETGVSATRDTPTSIVPNITPPRVQIANPRDSTAAAALAA 116 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + +D + + +I + + Sbjct: 117 RIED---------------------------------NEFRRIKAQIDAYART---HGLR 140 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGH 271 V R G+++ ++ + +FD + E + +L +G +L I + GH Sbjct: 141 DQVEAVVARRGLVVRLL--TDQVLFDSGFADLKSEGMPLLTHVGNLLVIDRIHPILVEGH 198 Query: 272 TDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328 TD P + NW LS RA + L+ GV R SG+A +D Sbjct: 199 TDDVPISTSRFESNWELSTARATEVVRYLIDRGVPTRRFGA-SGYADLHPLGSNGTDRGR 257 Query: 329 SANRRIDILVED 340 + NRR++++++ Sbjct: 258 ARNRRVEVVLQR 269 >gi|294501552|ref|YP_003565252.1| putative flagellar motor channel protein [Bacillus megaterium QM B1551] gi|294351489|gb|ADE71818.1| putative flagellar motor channel protein [Bacillus megaterium QM B1551] Length = 203 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 77/187 (41%), Gaps = 9/187 (4%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-ETT 220 + N++ + L+ LA K + I + + + +N ++ V+ + Sbjct: 20 SMSSVDNQKFQTVVNSLTSGGSLASVEKSQQSQKLDSILAKVQDYLKENKLQNVITAKRD 79 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G+++ + +Q +F+ + L + L ++G + + I + GHTD P Sbjct: 80 ERGVVLILQEQ---VLFETGQADILKKGTPFLDELGRLFSTIPNDIKVEGHTDNRPIHTY 136 Query: 281 AR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 NW LS RA + L +S +R + G+ + + + + NRR++I Sbjct: 137 RYPSNWELSAARASGVIRYLTNHFSLSANRFEAL-GYGDTKPLVPNTSNGNLQKNRRVEI 195 Query: 337 LVEDRQG 343 ++ D + Sbjct: 196 IISDPEA 202 Score = 42.9 bits (99), Expect = 0.066, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 41/90 (45%), Gaps = 8/90 (8%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 + +AD +T+++ FF++++ +++ D+ + + +T+ + + + Sbjct: 1 MVTFADLVTLILVFFILLFSMSSVDNQKFQTVVNS--------LTSGGSLASVEKSQQSQ 52 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 + I + +++ +N + I + ++ Sbjct: 53 KLDSILAKVQDYLKENKLQNVITAKRDERG 82 >gi|116328262|ref|YP_797982.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121006|gb|ABJ79049.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 340 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS-INKEENYFLPPLSKE 181 + + F + + T +K + L K + + + + +S+ Sbjct: 120 EESERQGKKFRDLLDNLKDELEQEKTACQKKAEALQKEYEKKVAYLEARILALNDEISRL 179 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 K L+ +KK L LA + + + L + + + ++I+I D FD S Sbjct: 180 KNLSENQKKELDRLADQANELENKLGDEIKKGQIRLKRFHNRLVINIDD---RISFDSGS 236 Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL 299 + + + L KI E+L + +I I GHTD P R DNW+LS +RA S Sbjct: 237 AELKKQILPALDKIKEILGNYPGNLIIIEGHTDNVPIRTRKFSDNWQLSGERALSVLHYF 296 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++S + + R ++G+ + +++D + NRR+DI+V R Sbjct: 297 LESKILDPRNFSLAGYGEFQPIVSNDTPENRALNRRVDIVVVPR 340 >gi|171318847|ref|ZP_02907983.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171095946|gb|EDT40882.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 226 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + ++ + L+ L A + GI I I +F+ + LP+ VL + Sbjct: 81 MPERAPAWLASLDALKTSGRISLVRAPHGIEIGI---DAKILFNVGDARLLPDATPVLSQ 137 Query: 255 IGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 I L+ H+T I + GHTD+ P N NW LS RA S + L GV+ R++ I Sbjct: 138 IARALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAGSVVRYLADRGVAPHRLAAI 197 Query: 313 SGFAHHRLKIASD--PMNSANRRIDILV 338 G A + +A D P + NRR+ I V Sbjct: 198 -GRADTQPLVAGDDAPARARNRRVTIFV 224 Score = 37.2 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 G W I YAD +T LM FL ++++ Sbjct: 24 GAQSGRWLISYADLITTLMVLFLALYVLQ 52 >gi|304311123|ref|YP_003810721.1| Flagellar motor protein MotB [gamma proteobacterium HdN1] gi|301796856|emb|CBL45068.1| Flagellar motor protein MotB [gamma proteobacterium HdN1] Length = 359 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 124/327 (37%), Gaps = 60/327 (18%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ +++ N W I YADF+T+L AFF+VM+ I++ +D + + Sbjct: 2 RRRELEEETVNHERWVISYADFITLLFAFFVVMYSISSVNDGKYRVLSDSL--------- 52 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 +D T N V + +E + Sbjct: 53 -------------------VDAFQSASRTINPVSIGEKVATSGNFETAVELPVPG----- 88 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 D D + S+ + P +++ ++ L L+++ Sbjct: 89 -----------------DFPSKEDYKYSVEGLFDDVEPGAARQGDHQDQQTSALSKLSEE 131 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++S L + + VK V + +SI + +F +S+ + +L KI EV Sbjct: 132 MASRLQVEIQNADVKVV---QRSEWLEVSI---PSNVLFASASANLSADAARLLGKISEV 185 Query: 259 LAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + G TD P R NW LS RA + ++ + GV+ R++ I G+A Sbjct: 186 LKPADYSVQVEGFTDNVPIRTEQFPSNWELSAARAAAVVRLFVLGGVNPARLAAI-GYAD 244 Query: 318 HRLK--IASDPMNSANRRIDILVEDRQ 342 R A+ + NRRI+I+V + Sbjct: 245 QRALGDNATAEGRALNRRINIIVSTSK 271 >gi|319651875|ref|ZP_08005999.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2] gi|317396434|gb|EFV77148.1| hypothetical protein HMPREF1013_02611 [Bacillus sp. 2_A_57_CT2] Length = 246 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 8/170 (4%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 P E+I +L L + + S L + + K ++ T G+++ + +Q + Sbjct: 71 PEQNEEIKENGDSGQLDSLDELLMEIQSFLDENGLEKVIVANRTERGVVLVLQEQ---VL 127 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295 F+ + + + L K+G +LA+ ++ + GHTD P NW LS RA + Sbjct: 128 FESGDASLIDSSYSFLDKVGTLLANMPNLVKVEGHTDDRPITTYRYPSNWELSAARASTV 187 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVEDRQ 342 + L K + R + G+ R + + P N NRR++I++ D + Sbjct: 188 IRYLTEKHNLDSHRFMAV-GYGETRPIVPNSGPENWEKNRRVEIIISDPK 236 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K + + P W + ++D +T+++ FF++++ ++ D +A+ F + + Sbjct: 1 MKPRRRSPEPPKGSPRWMVTFSDLVTLILVFFILLFSMSQIDLMKFQALSDSFR--DRQV 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSID 103 + I +NP + + S Sbjct: 59 LDFQPSIIPAENPEQNEEIKENGDSGQ 85 >gi|225849649|ref|YP_002729883.1| flagellar motor protein MotB [Persephonella marina EX-H1] gi|225645473|gb|ACO03659.1| flagellar motor protein MotB [Persephonella marina EX-H1] Length = 231 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ K+ L+ L G+ E + G +I MF S+ P E + Sbjct: 82 KLKKKRNKLQKDLNRLEQLLEKAGIEAEVEKHGSIIRFRLNTER-MFPSGSATPYKEVVP 140 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L ++ + L + I+I GHTD +P R + N LS +RA S ++ G DR+ Sbjct: 141 LLLEVCKRLKETQFPITIEGHTDNTPIR--FKSNLELSAERALSVLKLFKSCGY-PDRLL 197 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340 G+ +R + +D + NRRI+I+++ Sbjct: 198 SARGYGEYRPLVPNDTPENRAKNRRIEIVIDT 229 >gi|255654793|ref|ZP_05400202.1| putative chemotaxis protein [Clostridium difficile QCD-23m63] gi|296449538|ref|ZP_06891315.1| chemotaxis protein MotB [Clostridium difficile NAP08] gi|296261602|gb|EFH08420.1| chemotaxis protein MotB [Clostridium difficile NAP08] Length = 246 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK+ + + +N + V G++IS+ D +FD ++ + + +I Sbjct: 89 KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSREKIIQI 145 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L I + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 146 GKMLNEMNSYIRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 70 Query: 93 SSQNKIDLSID 103 +D Sbjct: 71 PVVEPGSNDLD 81 >gi|138896104|ref|YP_001126557.1| flagellar motor protein MotB [Geobacillus thermodenitrificans NG80-2] gi|134267617|gb|ABO67812.1| Chemotaxis MotB protein [Geobacillus thermodenitrificans NG80-2] Length = 260 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 89/211 (42%), Gaps = 8/211 (3%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + ++ + +S + G + + + I +EK + ++ ++ Sbjct: 42 DQKKFQKIASSFSSAFTGGNGVLDFPNPVEPITPPAAQDEQGQEREKQPSPAMSQKEKEG 101 Query: 196 AKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++ + + +N + G + T G+ I+I+D +FD S+ + + + Sbjct: 102 LAQVKEKIDVYIQENKLGGKLQTSLTEEGLAITILDD---ILFDSGSAEVRMKDRRLASE 158 Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +L + + I GHTD P N NW LS+ RA + +VL+++ + R Sbjct: 159 VAALLVMNPPRNVIISGHTDNVPIHNAQFASNWELSVMRAVNFMKVLLENKQLDPRYFSA 218 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 G+ ++ +++ NRR++IL+ R Sbjct: 219 KGYGEYKPIASNETAAGRMKNRRVEILILPR 249 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + + SW I YAD +T+L+A F+V++ + D + I F + Sbjct: 1 MGKKKKNRRSEHMNDSWLIPYADLLTLLLALFIVLFSSSQIDQKKFQKIASSF----SSA 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T G+ D NP E + + K + ++ Q E Y+ Sbjct: 57 FTGGNGVLDFPNPVEPITPPAAQDEQGQEREKQPSP-AMSQKEKEGLAQVKEKIDVYIQE 115 Query: 137 SQQSEHCKNSLTRDS 151 ++ + SLT + Sbjct: 116 NKLGGKLQTSLTEEG 130 >gi|254462550|ref|ZP_05075966.1| flagellar MotB protein [Rhodobacterales bacterium HTCC2083] gi|206679139|gb|EDZ43626.1| flagellar MotB protein [Rhodobacteraceae bacterium HTCC2083] Length = 411 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 55/396 (13%), Positives = 115/396 (29%), Gaps = 78/396 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKN 75 P +W +AD +LMAFF+++ + K I Sbjct: 18 PKCPPVGAPAWMATFADLAILLMAFFVLILSFAEMNIPKFKQISGSLRDSFGIQRIVPVV 77 Query: 76 LMTASKGIFDEQNPPERSSQ------------NKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 I + P S + ++ + N + +++ ++ Sbjct: 78 EQPEGTTILELNFSPSPSPSITEEATQETTEVREPEVKVPTDNRDNDGKDNLNESDENRE 137 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 +N +E ++ + + D + ++N P EK Sbjct: 138 GLGGKNADGAGDGKSDAEKFAEAIEKIGASVNVSAELVDGKVAVNLNAEQSTPEEMIEKF 197 Query: 184 LAMKRKKRLQDL------------------------------------------------ 195 + + + +L Sbjct: 198 QRVAQALEIAELATGNSENEVLYAGLDKDLSQLIGMVSVIQDQKNAIDGESIEEDKERAQ 257 Query: 196 -----AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 A++ + L + + I G++ R G + ++ + F S+ Sbjct: 258 KALDKAREAEAKLKANLENEIENGLVTVERREGKV--FVNLGSGGAFPSGSASLTGAAQA 315 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ ++ + + GHTD P + RDNW L+ RA S Q + + +R Sbjct: 316 IVAELAATTNDPDSSVVVAGHTDNVPIGFGALYRDNWDLAAARAASVVQEIEGLNLVPER 375 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + R +D NRRI+I +E +Q Sbjct: 376 EMSATSYGEARPIADNDTPEGREKNRRIEIEIEFKQ 411 >gi|152980650|ref|YP_001353771.1| flagellar motor protein MotD [Janthinobacterium sp. Marseille] gi|151280727|gb|ABR89137.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille] Length = 259 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 10/185 (5%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 K + + P + + + K R+ +A+ I ++ LV+ V Sbjct: 67 KDPVSQNAPILPLPIPTPAQRANEAVVKREKARMTSIARDILKAMAPLVSQG---KVRVT 123 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T G+ + I + +F + ++ L+ + +VL I + GHTD +P Sbjct: 124 QTNRGVSVEI---NASVLFAPGEAKLNAQSEAALRAVAQVLKDVDNDIQVEGHTDNTPIN 180 Query: 279 NI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 N NW LS RA S ++ + +GV+E R+ + G + ++D NRR+ Sbjct: 181 NTMFPSNWELSAVRASSVVRLFLANGVAEKRLVAM-GHGANLPVDSNDTTEGRLRNRRVQ 239 Query: 336 ILVED 340 +++ Sbjct: 240 LMILS 244 >gi|220927721|ref|YP_002504630.1| OmpA/MotB domain protein [Clostridium cellulolyticum H10] gi|219998049|gb|ACL74650.1| OmpA/MotB domain protein [Clostridium cellulolyticum H10] Length = 259 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 18/209 (8%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 QQ +S + E + + I+ P + + ++++ L K Sbjct: 44 QQLSQSLSSAFGNGETAYVIQGGSSGNSLIDFPATMPSPVIPSKI-----EDQQMEALEK 98 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +I+S + ++ + V GI+++I +F S+I P+ + KIG+ Sbjct: 99 EINSLVD---SEGLKGNVAVTMQERGIVVTI---NEKILFKSGSAIIEPKDQDTVIKIGK 152 Query: 258 -VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 +L+ I + GHTD P ++ NW LS RA + ++L++ G++ I + Sbjct: 153 DILSKIPNKHIRVEGHTDNVPMKSTLYASNWELSAGRAINVLKLLVEKGGINPKMIHPVP 212 Query: 314 GFAHHRLKIAS--DPMNSANRRIDILVED 340 + + + + D + NRR+DI++ Sbjct: 213 -YGEYSPLVPNTTDANRAKNRRVDIVILR 240 Score = 41.0 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT------ASKGIFDE 86 + + YAD M +L+ F+V++ ++ + + + + Q + N T S G Sbjct: 14 YLLTYADLMNLLLILFIVLYSMSQVNTEKFQQLSQSLSSAFGNGETAYVIQGGSSGNSLI 73 Query: 87 QNPPERSSQNKIDLSIDEHI 106 P S D+ + Sbjct: 74 DFPATMPSPVIPSKIEDQQM 93 >gi|149375537|ref|ZP_01893307.1| flagellar motor protein MotB [Marinobacter algicola DG893] gi|149360242|gb|EDM48696.1| flagellar motor protein MotB [Marinobacter algicola DG893] Length = 305 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 105/320 (32%), Gaps = 63/320 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 ++ + +W + +AD M++LM FF+++ + D K I + Sbjct: 5 PEEEKAGIPAWVVTFADLMSLLMCFFVLLLSFSEIDAQKFKQIAGELSKA---------- 54 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + + V + K E + Sbjct: 55 -----------------FGVQREVPVLEVPMGTSPIFDKFSPAPPEPTVV---------- 87 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + K T ++ E ++ E + + +K L+ + + + Sbjct: 88 -------------NEVKQTTTDEQPELETLKSPTDVAVESAIQDELQKTLEQVRSVLETA 134 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + T+ I I+ F S+ E +L ++ ++L Sbjct: 135 I---------EDGRVNLTQDHHRI-IVRVEEKGAFPSGSADLTWEFEGLLLEMADILVEI 184 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++I GHTD P R NW LS RA + L+ G + ++G A+ + Sbjct: 185 PGKLTIEGHTDDVPIRTQRFYSNWDLSAARAAAVANALLAEGKLKPSRLAVTGLAYTEPR 244 Query: 322 IASD--PMNSANRRIDILVE 339 + + + NRR++I+++ Sbjct: 245 VPNTSSENRAKNRRVEIIID 264 >gi|52079917|ref|YP_078708.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580] gi|52785288|ref|YP_091117.1| flagellar motor protein MotB [Bacillus licheniformis ATCC 14580] gi|52003128|gb|AAU23070.1| motility protein B [Bacillus licheniformis ATCC 14580] gi|52347790|gb|AAU40424.1| MotB [Bacillus licheniformis ATCC 14580] Length = 259 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 7/209 (3%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++ + S G + + + P + + +++K Q L Sbjct: 44 DAKKFDMLSKSFNAVFTGGTGMMDYSSFTEPKTSTTEDGKSPDQAKDLSEAQKEKDKQSL 103 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K + N+ K V + T G+L+SI D FD + + I + +++ Sbjct: 104 KKIQEQVNRFIKEKNLQKQVNTKLTDEGLLLSIEDN---IFFDSGKAEIRQQDIPLAKEV 160 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++L + I I GHTD P RN + NW LS+ RA + +L+++ + +I Sbjct: 161 SDLLVLNPPRNIVISGHTDNVPIRNSQFKSNWHLSVMRAVNFMGLLIENPKLDAKIFSAK 220 Query: 314 GFAHHRLKIASDPM--NSANRRIDILVED 340 G+ + ++D NRR++IL+ Sbjct: 221 GYGEFKPIASNDTEEGRRKNRRVEILILP 249 >gi|220935190|ref|YP_002514089.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996500|gb|ACL73102.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 252 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 13/181 (7%) Query: 169 KEENYFLPPLSKEKILAMKRKKRL-----QDLAKKISSTLSGLVA-DNIVKGVLFETTRT 222 +PPL +E ++ L ++ A S L +A ++GV TT Sbjct: 73 PHRQSIVPPLFEEAPATYPGEQPLAEPLAREEAPAAESALEQALARQGGLEGVEVFTTPG 132 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIA 281 + + I + +F S+ + +L + VL + I++ GHTD P I Sbjct: 133 QVELRI---KEGILFASGSAELRSDGRALLSSLMPVLNAAEGQITVEGHTDNVPIFTPIF 189 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 NW LS RA + L+ G++ +R+ + GFA R +D + NRR+ ++++ Sbjct: 190 PSNWELSAARASGVVRQLIALGLAPERLQAV-GFADTRPVAGNDTAEGRAENRRVSLVIQ 248 Query: 340 D 340 Sbjct: 249 T 249 >gi|330861238|emb|CBX71489.1| hypothetical protein YEW_CQ10840 [Yersinia enterocolitica W22703] Length = 239 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVS 305 +L+ I +L IS+ GHTD P+ + NW LS DRA ++ + L+ G+ Sbjct: 1 MRDILRAIAPILNDIPNKISLSGHTDDLPYASGERGYSNWELSADRANASRRELLAGGLD 60 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 E ++ ++ G A + NRRI ILV ++Q Sbjct: 61 EGKVLRVVGMASTMRLKEQASDDPVNRRISILVLNKQ 97 >gi|225849164|ref|YP_002729328.1| chemotaxis protein MotB [Sulfurihydrogenibium azorense Az-Fu1] gi|225643203|gb|ACN98253.1| chemotaxis protein MotB (Motility protein B) [Sulfurihydrogenibium azorense Az-Fu1] Length = 265 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 8/153 (5%) Query: 189 KKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K++ +D KKI + +V N+ V E G+ I I+D +F+ S E Sbjct: 76 KQKREDTKKKIKERVEQIVKKLNLEGKVQVEVIPMGVRIRILD---YILFNPCSVEIKKE 132 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVS 305 +L + EV+ + + + GHTD P I NW LS RA S + L++S Sbjct: 133 YQELLSSVAEVIKEANLPVEVEGHTDNIPPSGNCIYPSNWELSAARAASVVRFLIQSKNL 192 Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 + G+A R + S NRRI+I Sbjct: 193 PPAMFTAVGYADTRPIAPNTSEIGRSMNRRIEI 225 >gi|291613031|ref|YP_003523188.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291583143|gb|ADE10801.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 259 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 99/217 (45%), Gaps = 14/217 (6%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI----LAM 186 ++ +S+ + ++ S++ + G + ++++E YF + + + Sbjct: 34 MYGISSVNEGKYKVFSVSVNQAFGANGKAGEGNAIHLSEQEMYFKSLVDRRNARLAEIQR 93 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K+ + +Q+LAK ++++++ V + + T G+ + I + +F + + P Sbjct: 94 KQNESMQNLAKDLNASMASFVKNG---QMNVSQTGRGVELEI---NASALFKQGEADIEP 147 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVS 305 E + L +VLA + I + GHTD P NW LS RA S ++ + G++ Sbjct: 148 EALKTLADAAKVLAGNDFAIEVEGHTDNLPISTPKFPSNWELSSARASSVVRLFIDQGIT 207 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R+ + G A ++ ++D + NRR+ I V + Sbjct: 208 AKRLKAV-GSADNQPVDSNDTPEGRARNRRVTITVLN 243 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 21/236 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N+ W + YADF+T+L AFF+VM+ I++ ++ K N Sbjct: 1 MARRPKRAEHDNH-ERWMVSYADFITLLFAFFVVMYGISSVNEGKYKVFSVSVNQAFGAN 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ-KKQYQRLENNIFYLS 135 A +G N I LS E K+ VD + + +++ N+ Sbjct: 60 GKAGEG-------------NAIHLSEQEMYFKSLVDRRNARLAEIQRKQNESMQNLAKDL 106 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N+ + KN S+ G+ + + + E P K A K D Sbjct: 107 NASMASFVKNGQMNVSQTGRGVELEINASALFKQGEADIEPEALKTLADAAKVLAG-NDF 165 Query: 196 AKKISSTLSGLVAD--NIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSIPLP 246 A ++ L + R ++ + + + S+ P Sbjct: 166 AIEVEGHTDNLPISTPKFPSNWELSSARASSVVRLFIDQGITAKRLKAVGSADNQP 221 >gi|322421034|ref|YP_004200257.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320127421|gb|ADW14981.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 292 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 N + + S ++ + G+ K DL + + E + Sbjct: 69 ASMTGERNALATDKKGLEDALKSTSDAKNQKIGELSQKLGDLGQKLADLEADNKRLRDEV 128 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 L +++ +Q +K S L + + V + + ++++D +FD Sbjct: 129 ARLQKLKEEEVQKTSKTYSDLLEQMKGEMAKGQVTISELKGKLTVNMVDS---VLFDSGK 185 Query: 242 SIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRN----IARDNWRLSLDRAYSAY 296 + PE +VVLQK+ ++L + +V+ I GHTD NW LS RA + Sbjct: 186 AEVKPEGLVVLQKVIDILKNIKDKVVRIEGHTDNVQIVGQLAKRYPTNWELSAARAINVT 245 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + L + G+ ++ ++ + H+ +D + NRRI+I++ ++ Sbjct: 246 RYLQQQGLDPALLAAVA-YGEHKPVAPNDTDEGRAKNRRIEIVLVAKE 292 >gi|315127296|ref|YP_004069299.1| chemotaxis protein [Pseudoalteromonas sp. SM9913] gi|315015810|gb|ADT69148.1| putative chemotaxis protein [Pseudoalteromonas sp. SM9913] Length = 320 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 112/324 (34%), Gaps = 65/324 (20%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++ + W + YAD+MT++ AFF+V++ I +D K + Sbjct: 4 RRLRHHQLKSQHTERWLVSYADYMTIMFAFFVVLYAIAINKEDNIKVLSDSLEHVFDKSA 63 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 ++ + D + E +T + L S + +Q L + SN Sbjct: 64 KQYS---------QQGNGVNGDALLLERVTPEAEILYGESIQELEQGPMLLDGQSDNSNI 114 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q K L Sbjct: 115 SQRHLGKP-------------------------------------------------LDS 125 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ S L+ + E ++ ++I + + +F S++ + +++KI Sbjct: 126 LLAKLQSSLIDEIRSGEASLELSQDWLVIEL---NSGLLFASGSAVAHNKAKEIVKKIEA 182 Query: 258 VLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++A I +RG+TD RN I R NW LS+ RA S L + G+ R+ I G+ Sbjct: 183 IIASVDNYIRVRGYTDNETIRNEIFRSNWELSVARATSILVELERLGIESARM-AIEGYG 241 Query: 317 HHRLKIASDPM--NSANRRIDILV 338 + ++ + NR++ I + Sbjct: 242 QYSPFADNNTEAGRAENRKVVIAL 265 >gi|302392384|ref|YP_003828204.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501] gi|302204461|gb|ADL13139.1| OmpA/MotB domain protein [Acetohalobium arabaticum DSM 5501] Length = 248 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L + +KI+S L + + E T G+ I +FD + + Sbjct: 86 ELNRINQKITSYLQE---QELEDEIKVEMTERGLTIRFT---GKVLFDIGRATIKEDAYS 139 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDR 308 +L KI +++ I + GHTD P N NW LS RA + ++ ++ + Sbjct: 140 ILDKISGIISEVPNQIMVEGHTDNLPISNSRFPSNWELSTARATEVVKYFIEENSITPAK 199 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 +S +G++ ++ +D + NRR+D+++ R+ Sbjct: 200 LSA-AGYSKYKPVKPNDSPENRALNRRVDVILLKRE 234 Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++K ++ ++ +W Y D MT+L+AFF++++ ++ D + + + L Sbjct: 3 RRKKRRNNDESDDSNWLTTYGDMMTLLLAFFVLLYSFSSVDVQKFRNVVEALQGNLGVLK 62 Query: 78 TA 79 Sbjct: 63 GG 64 >gi|223936109|ref|ZP_03628023.1| OmpA/MotB domain protein [bacterium Ellin514] gi|223895331|gb|EEF61778.1| OmpA/MotB domain protein [bacterium Ellin514] Length = 280 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 8/206 (3%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + L L ++ E +S+ + +K + + + Sbjct: 46 ATTEGQLRGLEPLPAKLQEAKGNLAKALAENQKNQEQISELQAQVADLQKEKEKVGQTAK 105 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + +D + V + + ++I+D MFD + P+ VL+KI +LA Sbjct: 106 GLEDEMRSDLESRDVTISNLKGKLTVNILD---RVMFDSGEAAVKPDGESVLRKIATILA 162 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHH 318 E I + GHTD P RN NW LS RA +A + K+GV R+ +G+ + Sbjct: 163 GHPELKIQVIGHTDNVPIRNRFASNWELSAARAIAAVHFITEKAGVDPRRVGA-AGYGEY 221 Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342 R + + NRRI I + + Sbjct: 222 RPIADNSTAEGRARNRRIAITILPDE 247 >gi|23099679|ref|NP_693145.1| flagellar motor protein MotS [Oceanobacillus iheyensis HTE831] gi|22777909|dbj|BAC14180.1| flagellar motor aparatus [Oceanobacillus iheyensis HTE831] Length = 251 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 6/182 (3%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E + E+ + + + + +K +L + + + L +N+ + Sbjct: 71 PTESTGENSEDGKIDEIEPIYLANEEEEKSTDELDELMMNVSQYLEENNLKDVITANRNE 130 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G+++ + + +F+ + L E L IG +L+ +++ GHTD+ P N Sbjct: 131 RGVVLVL---QEKILFESGEAEILEEAGPFLNHIGTLLSELDNQVNVEGHTDSRPISNYR 187 Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338 NW LS RA S + +++ G+A +++ S NRR++I++ Sbjct: 188 YPSNWELSGARASSVVRYFIEAESLHMSRFSTVGYADTVPLEPNSNEANMSKNRRVEIII 247 Query: 339 ED 340 D Sbjct: 248 LD 249 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + Y+D +T+++ FF++++ ++ D + + F + + Sbjct: 1 MKRRSIRHQSKKGAPKWMVTYSDMITLILVFFILLFSMSQIDQTKFDQVTESFQ--NRMI 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDE 104 + +NP E + +N D IDE Sbjct: 59 LDFLPSAVPLENPTESTGENSEDGKIDE 86 >gi|226314899|ref|YP_002774795.1| chemotaxis protein [Brevibacillus brevis NBRC 100599] gi|226097849|dbj|BAH46291.1| probable chemotaxis protein [Brevibacillus brevis NBRC 100599] Length = 260 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 109/264 (41%), Gaps = 8/264 (3%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + D++ E+ + LS + IT V + I + Q K Q + ++ S + H Sbjct: 1 MHDDRLYDEKELEKSWLLSYSDLITLLFVIVIIIAATQTKSIQSQKEDVQKEKASLEKVH 60 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 L +K + + LE + + + S++ KR L D +++ T Sbjct: 61 ESLDLLNL-QKLELQREVYQLEARQKELKGEKVKEGSEDTANVPKRPMGLSDSSERDMET 119 Query: 203 LSGLVADNIVK-GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + ++ + + + +E T G+ I + T +F S+ + V+ + VL Sbjct: 120 VRNQLSSALAELNLDYEETEEGLRIRL---PETILFTSGSADLQAQGKQVVGTVAGVLKR 176 Query: 262 STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I G+TD P R+ + NW LS RA S + ++ + ++G ++ Sbjct: 177 FEHKVRIEGYTDDVPISRSSFQSNWELSSARAISVMREMVDANSLPASRFTVAGLGEYKP 236 Query: 321 KI--ASDPMNSANRRIDILVEDRQ 342 + ++ + NRR++I++ + Sbjct: 237 LVDNSNAENRAKNRRVEIVILGEK 260 >gi|255099860|ref|ZP_05328837.1| putative chemotaxis protein [Clostridium difficile QCD-63q42] Length = 246 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KKI + + +N + V G++IS+ D +FD +I + + +I Sbjct: 89 KKIGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAIVKDNSRDKIIQI 145 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L + + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 146 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 70 Query: 93 SSQNKIDLSID 103 +D Sbjct: 71 PVVEPGSNDLD 81 >gi|56421066|ref|YP_148384.1| flagellar motor protein MotB [Geobacillus kaustophilus HTA426] gi|56380908|dbj|BAD76816.1| motility protein B (flagellar motor rotation) [Geobacillus kaustophilus HTA426] Length = 259 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 10/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q+ ++ D + ++E ++ K K+ L + Sbjct: 47 QEIARAFSTAFAGGTGVLDFQSPIEPITPPAQDEEGRHQAKQPSPVVNGKEKEELGQIKA 106 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI S + + + + T G+ I+I+D +FD S+ + + +I Sbjct: 107 KIDSYIH---DNKLTGKLQTSLTDEGLAITILDD---ILFDSGSAEVRMKDRRLAAEISA 160 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + I I GHTD P N NW LS+ RA + +VL+++ + R G+ Sbjct: 161 LLVMNPPRNIIISGHTDNVPIHNEKFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGY 220 Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDR 341 ++ ++ NRR++IL+ R Sbjct: 221 GEYKPIASNATAAGRMKNRRVEILILPR 248 >gi|34497269|ref|NP_901484.1| flagellar motor protein MotD [Chromobacterium violaceum ATCC 12472] gi|34103125|gb|AAQ59488.1| chemotaxis motB protein [Chromobacterium violaceum ATCC 12472] Length = 277 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 10/187 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 T ++ + S + + +L L + ++ LS LV V Sbjct: 67 QTTPPTGGANTMIEIPQTKPIAKSTARNRKAEEAAKLGQLTQNLAKALSPLVQSG---EV 123 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + GI I I D +F ++P +++ ++ + ++LA I + G TD + Sbjct: 124 TITQSNQGIHIDIRDS---ALFAVGQAVPNQQSMPLMSNMAKLLAGVDNAIKVEGFTDDA 180 Query: 276 PFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332 P R + NW LS RA ++ +SGV R+ + G ++ + + NR Sbjct: 181 PIRTPVFPSNWELSAARAGGVVRLFQESGVDPQRLVAV-GHGANQPVADNATADGRARNR 239 Query: 333 RIDILVE 339 R+ I V+ Sbjct: 240 RVTISVQ 246 >gi|255305748|ref|ZP_05349920.1| putative chemotaxis protein [Clostridium difficile ATCC 43255] Length = 246 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KKI + + +N + V G++IS+ D +FD +I + + +I Sbjct: 89 KKIGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAIVKDNSRDKIIQI 145 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L + + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 146 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235 Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNS 67 >gi|300114849|ref|YP_003761424.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113] gi|299540786|gb|ADJ29103.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113] Length = 280 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 89/305 (29%), Gaps = 71/305 (23%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 + +W I AD M++LM+FF+++ + D K + Sbjct: 12 PREERTGAPAWVITLADLMSLLMSFFVLLLSFSEMDVLKYKQVAGSM------------- 58 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 K + I Q+ R + + Sbjct: 59 --------------KFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWNEIRQDTIDE 104 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K +L +D + + +L K+ Sbjct: 105 TKQTLDFSDAPIQD-------------------------------TEAEVAELQDKLQHE 133 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + + ET + I+I I + F S+I E L KI +L Sbjct: 134 IDEGL-------ITIETIKDRIIIRI---QEKGSFPSGSAIFSREFKPALDKIRAILKKI 183 Query: 263 TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRL 320 + + GHTD P + R NW LS RA S L+ +S R + G+A + Sbjct: 184 EGKLIVAGHTDDRPIQTSRFRSNWELSTARAVSVVHYLLATHEISPGRFV-LEGYADTQP 242 Query: 321 KIASD 325 ++ Sbjct: 243 LAPNE 247 >gi|316932465|ref|YP_004107447.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600179|gb|ADU42714.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 341 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 106/312 (33%), Gaps = 16/312 (5%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 +L F +V + ++ KA+ + L G + + + Sbjct: 33 LLTVFLVVQFFLSQEVTGKDKALAELNARIAQLNDILSLEKLGKLNLEEQLAQMRAGLSA 92 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + K D G+ N S + + + Sbjct: 93 AETERDRVKGLYDGLAGAGNDAAGRAGELGKALDSEKQISSRALAQVEVLNQQIAALRRQ 152 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 LE +++ E S+ L + L +++S S ++ +L + Sbjct: 153 LAALEDALDASEKRGKESQSRIADLGQRLNVALAQRVQELSRYRSEFFGR--LRAILGDR 210 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGH 271 I+ ++ FD ++ LPE L K+ + L A V+ + GH Sbjct: 211 PDIRIVGDRFVFQSEVFFDTGQALLLPEGRAELDKVADALKELDKQIPAELPWVVRVDGH 270 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329 TD P R NW LS RA S Q LM GV R+ +GFA + +D ++ Sbjct: 271 TDRRPITGAFRSNWELSSARAISVVQYLMSRGVPAQRLVA-AGFAEFQPLDTADTEDAYR 329 Query: 330 ANRRIDILVEDR 341 NRRI++ + +R Sbjct: 330 RNRRIELKLTER 341 >gi|82702444|ref|YP_412010.1| flagellar motor protein MotD [Nitrosospira multiformis ATCC 25196] gi|82410509|gb|ABB74618.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] Length = 288 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 90/217 (41%), Gaps = 10/217 (4%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK---EENYFLPPLSKEKILAM 186 + + + N+ S++ + + + + EE+ + + Sbjct: 39 QVNEGKYQRMAGSLVNAFGAQSDRSVLITPESAPSSPVQESPTEEDRSIKKARRLAEAQR 98 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++ ++ +A+ + + + V + G+ + I +F ++ Sbjct: 99 GQQEAMEVIARDVVAAFQPFRSLIENGQVRVIPSSRGLAVEI---NAKVLFAPGQAVLEQ 155 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVS 305 + VL+ + +VL ++ I + GHTD+ P + NW LS RA S ++L+ SGV Sbjct: 156 NSARVLEAVAQVLKNNDYPIQVEGHTDSIPIVTDKFPSNWELSAVRASSVVRLLIGSGVE 215 Query: 306 EDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 R++ + G+ +R ++D + NRR+ I++ Sbjct: 216 AARLTAV-GYGENRPVDSNDTEDGRTRNRRVTIMILS 251 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 68/205 (33%), Gaps = 15/205 (7%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K +++ N+ W + YADF+T+L+A F+VM+ ++ ++ + + Sbjct: 1 MARKRKLEERENH-ERWLVSYADFITLLLALFVVMYAVSQVNEGKYQRMAGSLVNAFGAQ 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 S I E P ++ + + + + G + R F Sbjct: 60 SDRSVLITPESAPSSPVQESPTEEDRSIKKARRLAEAQRGQQEAMEVIARDVVAAFQPFR 119 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S + + + E N + + +L + L+ +A Sbjct: 120 SLIENGQVRVIP--------------SSRGLAVEINAKVLFAPGQAVLEQNSARVLEAVA 165 Query: 197 KKISSTLSGLVADNIVKGVLFETTR 221 + + + + + + T + Sbjct: 166 QVLKNNDYPIQVEGHTDSIPIVTDK 190 >gi|315122279|ref|YP_004062768.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495681|gb|ADR52280.1| flagellar motor protein MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 126 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 71/125 (56%), Positives = 88/125 (70%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MN D +Q+ +QFI IKKKV +D LGSWKIVYADFMT LM+FFLVMWI+NATDD+ Sbjct: 1 MNYQKDNDQKKNQFIFIKKKVVVDLEKKKLGSWKIVYADFMTALMSFFLVMWIVNATDDN 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TKK IE YFNPFG NL+ ASKGIF++ N P +N I+ ID+ T N+ +LK + Sbjct: 61 TKKVIENYFNPFGPNLLMASKGIFEKNNSPNNFPKNSINQPIDKKTTNNNFNLKDSIARK 120 Query: 121 KKQYQ 125 KK + Sbjct: 121 KKNIK 125 >gi|325294743|ref|YP_004281257.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065191|gb|ADY73198.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 233 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 12/171 (7%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +P + MK ++ ++ ++I L + GV E + G I + Sbjct: 68 QGKRIPLDFPDMYPKMKTRRAIEQKLQEIHQMLKKM-------GVKSEIAKYGTSIRLRI 120 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSL 289 + +F S P ETI ++ ++ + L I+I GHTD P R+ I NW LS Sbjct: 121 NTDK-LFPPGSEKPYKETIPLIMEMCKKLKELELPITIEGHTDNVPIRSKIFPSNWELSA 179 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S ++ ++ G ++S +G +R + + NRRI+I++ Sbjct: 180 ARAVSVLRLFIQCGYDPRKLSA-AGCGPYRPIAPNTTPEGRAKNRRIEIVI 229 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKN 75 + +K + +W + D M++L+ FF++++ ++ + +AI+ FG + Sbjct: 1 MARKKKEECKAP--PAWLTSFGDLMSLLLTFFILLYSMSTISLEKFYQAIKGIIQAFGGH 58 Query: 76 LMTASKGIFDEQNPP 90 + + + + P Sbjct: 59 YVIHEERVIQGKRIP 73 >gi|304407655|ref|ZP_07389306.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] gi|304343138|gb|EFM08981.1| OmpA/MotB domain protein [Paenibacillus curdlanolyticus YK9] Length = 263 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 8/175 (4%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISII 229 + + P ++ A++ +KR + + + + + +N + + V G+ I + Sbjct: 81 KPAPVKPPEEKPNAALEEEKRKNQELENVFAIIQAYIKNNKLEEKVFVTNEEQGVSIRLS 140 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRL 287 DQ +FD + +L K+ + ISI GHTD P + RDNW L Sbjct: 141 DQ---FLFDLGKADLKKAARPILDKLSSLFVKLDHPISIEGHTDNLPIQPGGEFRDNWAL 197 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 S R+ S + + E +I+G+ R + D S NRR++I + Sbjct: 198 SAGRSLSVLRYFTEIAQLEPTKFQIAGYGDTRPIAPNTTDANRSRNRRVEITILR 252 >gi|260682442|ref|YP_003213727.1| putative chemotaxis protein [Clostridium difficile CD196] gi|260686041|ref|YP_003217174.1| putative chemotaxis protein [Clostridium difficile R20291] gi|260208605|emb|CBA61322.1| putative chemotaxis protein [Clostridium difficile CD196] gi|260212057|emb|CBE02637.1| putative chemotaxis protein [Clostridium difficile R20291] Length = 248 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK+ + + +N + V G++IS+ D +FD ++ + + +I Sbjct: 91 KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSRDKIIQI 147 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L + + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 148 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 206 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 207 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 237 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 72 Query: 93 SSQNKIDLSIDE 104 +D Sbjct: 73 PVVEPGSNDLDS 84 >gi|172062649|ref|YP_001810300.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171995166|gb|ACB66084.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 228 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + L+ L A + GI I I +F+ + LP+ VL +I Sbjct: 85 ERAPAWLTSLDALKTNGRISLVRAPHGIEIGI---DAKILFNVGDARLLPDATPVLSEIA 141 Query: 257 EVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L+ H+T I + GHTD++P N NW LS RA S + L GV+ R++ I G Sbjct: 142 RALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAGSVVRYLADRGVAPHRLAAI-G 200 Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338 A + +ASD P + NRR+ I V Sbjct: 201 RADTQPLVASDDAPARARNRRVTIFV 226 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 + G W I YAD +T LM FL ++++ Sbjct: 21 EAEGAQSGRWLISYADLITTLMVLFLALYVLQ 52 >gi|302878266|ref|YP_003846830.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581055|gb|ADL55066.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 281 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIP 244 +++++++Q K + ++L ++ I +G++ T+ G+++ I +F + Sbjct: 84 LEQQRKIQAQMKAVDASLREVMGPLIAQGLVGVHQTKRGVVVDISAST---LFREGEEKL 140 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 P LQ++ VL+ + + + GHTD P + NW LS RA S + L+ G Sbjct: 141 QPGAQETLQQVAVVLSRENQSVEVEGHTDDVPIKTTQFPSNWELSSGRASSVVRTLVTYG 200 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 V E R++ + G A ++ +A+D + NRR+ I + + Sbjct: 201 VPEKRLAAV-GMAANQPVVANDTPENRAKNRRVSITILSPE 240 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 29/204 (14%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W I YADF+T+L AFF+VM+ I++ ++ K N Sbjct: 3 RRRKRAEHDNH--ERWLISYADFVTLLFAFFVVMYSISSVNEGKYKTFSDSLN------- 53 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + SS + + + Q+++ Q + Sbjct: 54 ----------SAFSESSATVVPSTQGQLFKVLVDKRDARMLEQQRKIQAQMKAVDASLRE 103 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 L + + + + E P ++ LQ +A Sbjct: 104 VMGPLIAQGLVGVHQTKRGVVVDISASTLFREGEEKLQPGA----------QETLQQVAV 153 Query: 198 KISSTLSGLVADNIVKGVLFETTR 221 +S + + V +TT+ Sbjct: 154 VLSRENQSVEVEGHTDDVPIKTTQ 177 >gi|254974362|ref|ZP_05270834.1| putative chemotaxis protein [Clostridium difficile QCD-66c26] gi|255091756|ref|ZP_05321234.1| putative chemotaxis protein [Clostridium difficile CIP 107932] gi|255313486|ref|ZP_05355069.1| putative chemotaxis protein [Clostridium difficile QCD-76w55] gi|255516174|ref|ZP_05383850.1| putative chemotaxis protein [Clostridium difficile QCD-97b34] gi|255649270|ref|ZP_05396172.1| putative chemotaxis protein [Clostridium difficile QCD-37x79] gi|306519371|ref|ZP_07405718.1| putative chemotaxis protein [Clostridium difficile QCD-32g58] Length = 246 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK+ + + +N + V G++IS+ D +FD ++ + + +I Sbjct: 89 KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAVVKDNSRDKIIQI 145 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L + + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 146 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 204 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 205 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 235 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 15 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 70 Query: 93 SSQNKIDLSIDE 104 +D Sbjct: 71 PVVEPGSNDLDS 82 >gi|39933998|ref|NP_946274.1| hypothetical protein RPA0921 [Rhodopseudomonas palustris CGA009] gi|192289418|ref|YP_001990023.1| hypothetical protein Rpal_0991 [Rhodopseudomonas palustris TIE-1] gi|39647845|emb|CAE26365.1| possible flagellar motor protein MotB [Rhodopseudomonas palustris CGA009] gi|192283167|gb|ACE99547.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 341 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 108/312 (34%), Gaps = 16/312 (5%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQ---YFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 +L F +V + ++ KA+ + L G + + + Sbjct: 33 LLTVFLVVQFFLSQEVTGKDKALAELNAKIAQLNDILSLEKLGKLNLEEQLAQMRAGLSA 92 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + K D G+ N N + + + + Sbjct: 93 AESERDRVKGLYDGLAGAGNDAAGRATELNKALDSEKQISARALAQVEVLNQQIAALRRQ 152 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 LE++++ E +K L + L +++S S ++ +L + Sbjct: 153 LAALEEALDASEKRGKESQNKIADLGQRLNVALAQRVQELSRYRSEFFGR--LRAILGDR 210 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGH 271 I+ ++ FD ++ LPE L K+ + L A V+ + GH Sbjct: 211 PDIRIVGDRFVFQSEVFFDTGQALLLPEGRAELDKVADALKELDKKIPAELPWVVRVDGH 270 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329 TD P + NW LS RA S Q LM GV R+ +GFA + +D ++ Sbjct: 271 TDKRPITGSFKSNWELSSARAISVVQYLMSRGVPAQRLVA-AGFAEFQPLDTADTDDAYK 329 Query: 330 ANRRIDILVEDR 341 NRRI++ + +R Sbjct: 330 RNRRIELKLTER 341 >gi|83589634|ref|YP_429643.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] gi|83572548|gb|ABC19100.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] Length = 256 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 11/182 (6%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + + ++ NY + E A+ R + + + + + L+ A+ + V Sbjct: 64 SPIVETEPAPSNYPENLQTPEAAAALARAQEMMQTYQTVKNFLT---ANGLESEVEVRYE 120 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 GI + D + +FD + PE +L K+ +L+ + + G+TD P + Sbjct: 121 DRGIAL---DIKERILFDSGRADLKPEARQLLDKLSGLLSRLPNEVKVEGYTDNRPIHTV 177 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 NW LS RA + ++ + DR I G+ + +D + NRR+ + Sbjct: 178 QFPTNWELSTARAARVVRYFIEEHHLQPDRFMAI-GYGEYHPLYPNDSPEHMAENRRVVL 236 Query: 337 LV 338 L+ Sbjct: 237 LL 238 >gi|261418451|ref|YP_003252133.1| flagellar motor protein MotB [Geobacillus sp. Y412MC61] gi|319767588|ref|YP_004133089.1| OmpA/MotB domain protein [Geobacillus sp. Y412MC52] gi|261374908|gb|ACX77651.1| OmpA/MotB domain protein [Geobacillus sp. Y412MC61] gi|317112454|gb|ADU94946.1| OmpA/MotB domain protein [Geobacillus sp. Y412MC52] Length = 259 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 10/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q+ ++ D + ++E + K K+ L + Sbjct: 47 QEIARAFSTAFAGGTGVLDFQSPIEPITPPAQDEEGRHQAKQPSPAVNGKEKEELGQIKA 106 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI S + + + + T G+ I+I+D +FD S+ + + +I Sbjct: 107 KIDSYIH---DNKLTGKLQTSLTDEGLAITILDD---ILFDSGSAEVRMKDRRLAAEISA 160 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + I I GHTD P N NW LS+ RA + +VL+++ + R G+ Sbjct: 161 LLVMNPPRNIIISGHTDNVPIHNEKFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGY 220 Query: 316 AHHRLKIASDPMNSA--NRRIDILVEDR 341 ++ ++ NRR++IL+ R Sbjct: 221 GEYKPIASNATAAGRMKNRRVEILILPR 248 >gi|126698325|ref|YP_001087222.1| putative chemotaxis protein [Clostridium difficile 630] gi|115249762|emb|CAJ67579.1| putative OmpA/MotB proton channel [Clostridium difficile] Length = 248 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 197 KKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KK+ + + +N + V G++IS+ D +FD +I + + +I Sbjct: 91 KKVGEEIQKYLNENGMANSVSLRVQDRGLVISLKDT---ILFDTGKAIVKDNSRDKIIQI 147 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS 313 G++L + + GHTD +N + NW LS+ RA + Q+L+ +G++ D++S + Sbjct: 148 GKMLNEMNSYMRVEGHTDNMSIKNSEFKSNWDLSVMRATNVVQLLIDNAGIAPDKLSAV- 206 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ R +S+ S NRR+DI++ D + Sbjct: 207 GYGEFRPIAENSSEEGRSKNRRVDIVLVDSK 237 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+LM FF++M+ ++ D + K + Q N + S G+ + N Sbjct: 17 WLLTYSDLITLLMIFFVIMYSMSNVDAEKYKQLSQSLN----SAFGGSSGVIEGGNSKIE 72 Query: 93 SSQNKIDLSID 103 +D Sbjct: 73 PVVEPGSNDLD 83 >gi|183221220|ref|YP_001839216.1| hypothetical protein LEPBI_I1834 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911311|ref|YP_001962866.1| endoflagellar motor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775987|gb|ABZ94288.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779642|gb|ABZ97940.1| Putative outer membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 354 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 11/242 (4%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 I K D + + ++ + + + E + L ++ + + D Sbjct: 110 RSIEKKGTDKERTLAEENRKREEKDRAEIDSLKRKLEEKERECLQKEQKLRESYESKMD- 168 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 + + L+ + L ++K+ L+ L+++ L + + + Sbjct: 169 --ELKERIRNLEEELASLRKLTKEQKRELERLSEQTKEFEEKLAKEITSGQIRLKRFHNK 226 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282 ++I+I D+ + FD SS P + ++KI ++LA I + GHTD P + R Sbjct: 227 LIINIDDKIS---FDSGSSELKPAILPAIEKIRDILASYPENYIVVEGHTDNVPIKTKFR 283 Query: 283 DNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 +NW LS +RA S + +L ++ S +G+ H+ + + + NRR+DI+V Sbjct: 284 NNWHLSSERALSVLEFILQNKNLNPKNFSS-AGYGEHQPIVPNSTKENKALNRRVDIVVI 342 Query: 340 DR 341 R Sbjct: 343 PR 344 >gi|74317269|ref|YP_315009.1| flagellar motor protein MotD [Thiobacillus denitrificans ATCC 25259] gi|74056764|gb|AAZ97204.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans ATCC 25259] Length = 263 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + S + A++ + + ++A + + LV + V +R G+ I I Sbjct: 84 PPEVRQRSLRQQQAIEEQAHMTEVASNLLDVMGPLVKEG---KVRVTQSRRGVSIEI--- 137 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLD 290 +F+ + PE++ VL+ + L H I I GHTD P N NW LS Sbjct: 138 NANVLFEPGRAELAPESLAVLRAVAAQLRHEPFNIEITGHTDIVPISNSVFASNWELSAV 197 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA S ++L G++ R+ I G + ++ + NRR+++++ Sbjct: 198 RATSVVRLLADGGIAPSRLFAI-GREASQPIASNGTAEGRARNRRVELMILS 248 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-----NPFGKNLMT 78 D N W + YADF+T+L AFF+VM+ ++A ++ + + P + + Sbjct: 17 DSDHENHDRWLVSYADFITLLFAFFVVMYAVSAVNEGKYRVLANALGGAFGKPVAELPVP 76 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112 G +RS + + + H+T+ + + Sbjct: 77 QLPGTTLPPEVRQRSLRQQQAIEEQAHMTEVASN 110 >gi|307824498|ref|ZP_07654723.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307734482|gb|EFO05334.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 265 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 13/212 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA---MKRKKRL 192 + E N + +E + EN + + + L+ +K +K+L Sbjct: 33 SDSLGEAFSNKEQQGNEIAPIQIGTLPTTIQPIPLENPTAVEVEERRELSEEILKERKQL 92 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 ++ + L+ + DN+ + I + + + +F + + I VL Sbjct: 93 SQVSGQFEQVLAPFIQDNL-----VSVKKNDYWIEL-EMNSEMLFLSGEAELSKKAIPVL 146 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 QKI EV+ +++I GHTD P NI R NW LS RA S +K G++ R+S Sbjct: 147 QKIVEVINPLPNMVNIEGHTDNIPIDNIKFRSNWDLSSARATSVVHEFVKEGINPPRLSA 206 Query: 312 ISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 I G+ + + NRR+ +++ + Sbjct: 207 I-GYGEFHPIGDNKIEAGRFKNRRVVLVLMSQ 237 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 13/188 (6%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 + YADF+T+L AFF+VM+ I++ ++ K + N I Q + Sbjct: 1 MVSYADFITLLFAFFVVMYSISSVNEGKYKTLSDSLGEAFSNKEQQGNEIAPIQIGTLPT 60 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 + I ++ ++++ E SQ S + L + Sbjct: 61 TIQPI-----------PLENPTAVEVEERRELSEEILKERKQLSQVSGQFEQVLAPFIQD 109 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K D I E N + LS E L+ K LQ + + I+ + + + Sbjct: 110 NLVSVKKNDY--WIELEMNSEMLFLSGEAELSKKAIPVLQKIVEVINPLPNMVNIEGHTD 167 Query: 214 GVLFETTR 221 + + + Sbjct: 168 NIPIDNIK 175 >gi|83590576|ref|YP_430585.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] gi|83573490|gb|ABC20042.1| OmpA/MotB [Moorella thermoacetica ATCC 39073] Length = 244 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 8/187 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ + L +++++ + ++ + +LA S L + V Sbjct: 51 DMARYQQLAQALSQIFTSSAGSMVLPELGNGNQVTPPDELAGFSQDLQSYLAEQGLKDQV 110 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 T G++IS + +FD+ + P ++ +LQKI L I + G TD Sbjct: 111 FVTATDQGLIISFT---GSVLFDRGQATLRPASVPILQKIAGYLGQVPNYIGVAGSTDDL 167 Query: 276 PF-RNIARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSAN 331 P + NW LS+ RA + +G+S R + G+ + ++ N Sbjct: 168 PINTSQFPTNWELSVIRATTVIRYFTETAGLSPSRFVAL-GYGQYHPLFPNNSEEDRRKN 226 Query: 332 RRIDILV 338 RR+DI++ Sbjct: 227 RRVDIII 233 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%) Query: 16 IIKK--KVAIDDTPNNLGS----WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 I K+ + ++ G+ W + YAD +T+LMAFF+VM+ ++ D + + Q Sbjct: 3 IFKRLQAGEENQGSSHAGAGSMRWLLTYADLITLLMAFFIVMYAVSKVDMARYQQLAQAL 62 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + T+S G + D S + G +Q + Sbjct: 63 ----SQIFTSSAGSMVLPELGNGNQVTPPDELAGFSQDLQSYLAEQGLKDQVFVTATDQG 118 Query: 130 NIFYLSNSQQSEHCKNSLTRDS 151 I + S + + +L S Sbjct: 119 LIISFTGSVLFDRGQATLRPAS 140 >gi|84514795|ref|ZP_01002158.1| flagellar MotB protein [Loktanella vestfoldensis SKA53] gi|84510954|gb|EAQ07408.1| flagellar MotB protein [Loktanella vestfoldensis SKA53] Length = 411 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 60/397 (15%), Positives = 117/397 (29%), Gaps = 78/397 (19%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP-------FGKN 75 P +W +AD T+LMAFF+++ + K I Sbjct: 16 PKCPPVGAPAWMATFADLATLLMAFFVLLLSFAEMNVPKFKQISGSLKDSFGVQKIIPVV 75 Query: 76 LMTASKGIFDEQNPPERSS--------------QNKIDLSIDEHITKNSVDLKIGSTNQK 121 + + P S + ++ + D G T+ Sbjct: 76 EQPKGTTVLELNFSPSPSPSVTEEATQETTEIKEPELKIPTDNRDMDGEDKQLEGETDAD 135 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 NI N +E +L + + D + +I+ P E Sbjct: 136 GLGGETAENIADNENMSDAEKLAAALEQIGTAVNIEAEIVDGKVAIDMNAEDASPQELIE 195 Query: 182 K------------------------------------ILAMKRKKRLQDLAKKISSTLSG 205 K +++ ++++ + + LS Sbjct: 196 KFQRVGQAIEIAGLATGKAEQEILFGGLDETLNDLISMVSEIQRQQQESGGATLDEALSQ 255 Query: 206 LV--------ADNIVKGVLFETTRTGILISIIDQRNTPM--------FDKSSSIPLPETI 249 + A+ ++ L + G+ +++ + F S+ + Sbjct: 256 MARATEKALEAEAQLRANLQDEIDQGL-VTVEQRDGKVFVNLGAGGAFPSGSADLTLQAR 314 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ ++ V T + + GHTD P + RDNW L+ RA S Q + S + Sbjct: 315 GIIDELAAVTVDPTSKVVVSGHTDNVPISFGALYRDNWDLAAARAASVVQEIEASIPAPG 374 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 R F + A+ NRRI++ +E Q Sbjct: 375 REMSAISFGETKPVADNATAEGRERNRRIELEIEFEQ 411 >gi|153931184|ref|YP_001384895.1| chemotaxis motB protein [Clostridium botulinum A str. ATCC 19397] gi|152927228|gb|ABS32728.1| chemotaxis protein MotB [Clostridium botulinum A str. ATCC 19397] Length = 420 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241 >gi|77164352|ref|YP_342877.1| flagellar motor protein MotB [Nitrosococcus oceani ATCC 19707] gi|254433318|ref|ZP_05046826.1| OmpA family protein [Nitrosococcus oceani AFC27] gi|76882666|gb|ABA57347.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|207089651|gb|EDZ66922.1| OmpA family protein [Nitrosococcus oceani AFC27] Length = 280 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 95/324 (29%), Gaps = 73/324 (22%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 + +W I AD M++LM+FF+++ + D K + Sbjct: 13 QEERTGAPAWVITLADLMSLLMSFFVLLLSFSEMDVLKYKQVAGSM-------------- 58 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 K + I Q+ R + + Sbjct: 59 -------------KFAFGVQREIKVKEPPKGTSIIAQEFSPGRPRPTPWNEIRQDTIDET 105 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K +L +D + + +L K+ + Sbjct: 106 KQTLDFSDAPTQD-------------------------------TEAEVAELQDKLQHEI 134 Query: 204 -SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 GL+ +K + R F S+I E L KI +L Sbjct: 135 DEGLITIETIKDRIIIRIRE-----------KGSFPSGSAIFSQEFKPALDKIRAILKKI 183 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + GHTD P + R NW LS RA S L+ + R + G+A + Sbjct: 184 EGKLIVAGHTDNMPIQTTRFRSNWELSTARAVSVVHYLLATHEISPRRFVLEGYADTQPL 243 Query: 322 IASD--PMNSANRRIDILVEDRQG 343 ++ + NRRI+I V +G Sbjct: 244 APNENAANRARNRRIEITVLPGEG 267 >gi|298505133|gb|ADI83856.1| OmpA family outer membrane lipoprotein [Geobacter sulfurreducens KN400] Length = 289 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 11/189 (5%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 +L + +++ E + +++++++++K L + + V + Sbjct: 104 ELRQKVSQLEAENARLKADIASTQKAKEEKVREVSKTYEDLLDKMKGEIAQGQVTISELK 163 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN- 279 + ++++D +FD + P + +LQK+ E+L T+ I I GHTD Sbjct: 164 GKLTVNMVD---AILFDSGKAEVKPAGMDILQKVVEILKDVTDKAIRIEGHTDNVQIVGN 220 Query: 280 ---IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 NW LS RA + + L G+ +S ++ + + +D + NRRI Sbjct: 221 LAKRFPSNWELSSARAINVTRFLQSRGIDPAVLSAVA-YGEYHPVAPNDTDEGKAKNRRI 279 Query: 335 DILVEDRQG 343 +I++ + Sbjct: 280 EIILVPKDA 288 >gi|222053743|ref|YP_002536105.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221563032|gb|ACM19004.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 258 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 P K K +D ++ + L+ V E R G+++S+ Sbjct: 79 PNMRPQSLPQKAVKSGKTKSHAEEKDFKAVKAAIEAYLLKTGAQDKVSVEINRRGLVVSL 138 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRL 287 + FD S+I +L + E L + T + + GHTD P + NW L Sbjct: 139 ---KEAGFFDSGSAIVQQSAYSLLAHVAESLVNYTNPVRVEGHTDNVPINSRTFPSNWEL 195 Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S RA + Q L+K ++IS +GF +R + S NRR+DI++ Sbjct: 196 STARATNLVQYLIKYYEFEPEKISA-TGFGEYRPVADNTTVDGRSKNRRVDIVLLS 250 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + +K + N+ W + YADF+T+L A F+ ++ ++ TD + + + Sbjct: 1 MARKKKPEKEA-NMERWMVSYADFITLLFAVFVTLYAMSQTDKKKAEEVVESLR 53 >gi|321312511|ref|YP_004204798.1| flagellar motor protein MotS [Bacillus subtilis BSn5] gi|320018785|gb|ADV93771.1| flagellar motor protein MotS [Bacillus subtilis BSn5] Length = 242 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 DL K SI KE N P + ++K + K+ +D ++ ++ + DN +K Sbjct: 49 DLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTSPSDTKKQEDQQDQLLKKVNTYIKDNHLK 108 Query: 214 GVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + G+++ + + +FD + L +L +I +L I + GHT Sbjct: 109 AQMTAKRDERGVVLVL---QEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHT 165 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328 D+ NW LS RA Q K + R + G+A + ++ Sbjct: 166 DSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAV-GYADTKPVKDNKTNEHM 224 Query: 329 SANRRIDILVEDRQ 342 NRR++I+++ + Sbjct: 225 KENRRVEIVIKKSK 238 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ + SW + + D +T+++ FF++++ ++ D KA G L Sbjct: 10 RRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQP 69 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 I + P S K + D+ + K + +K + +R E + Sbjct: 70 DQTSIEKKNTSP--SDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV 120 >gi|229121280|ref|ZP_04250511.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] gi|228662125|gb|EEL17734.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] Length = 224 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 13/180 (7%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K L K +D E+ K +P +S EK M KKR+ +L KK+ + V +N + Sbjct: 45 KMLEKFSDTEQVDAKVMENTIPDISHEKNDEKMISKKRMDELYKKLKA----YVDNNGIS 100 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 V TG+ + I+D +FD + PE ++ ++ I + GHTD Sbjct: 101 QVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTD 157 Query: 274 ASPFRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 + P N NW LS R A + ++ V + R++ + G+A + + +D + N Sbjct: 158 SRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPND--SPQN 214 >gi|329904710|ref|ZP_08273911.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium IMCC9480] gi|327547854|gb|EGF32612.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium IMCC9480] Length = 270 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 176 PPLSKEKILAM--KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 PP ++ + + + + K+ + +A+ I + LS L++ V T G+ I I Sbjct: 91 PPAAERQRIELLRREKESMTSIARDILNVLSPLISSG---KVRVTQTSRGVSIEI---NA 144 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRA 292 + +F + E+ L I +VL+ T I I GHTD P N NW LS RA Sbjct: 145 SVLFAPGEASLTNESGAALSAIAQVLSQDTHAIQIEGHTDNLPIGNATFPSNWELSSVRA 204 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 S ++ +G++E+R++ + G ++ ++D NRR+++L+ Sbjct: 205 SSVVRLFSNNGIAENRLTAV-GHGSNKPVGSNDTPEGRVRNRRVEVLIL 252 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 26/201 (12%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 + + DD + W I YADF+T+L AFF+VM+ I++ ++ + + N G Sbjct: 13 RSRKHFDDDAPSHDRWLISYADFITLLFAFFVVMYAISSVNNGKYRVLS---NSLGAAFG 69 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 +A I ++ + +R + Sbjct: 70 SAPIRI----------------------APPVPIEQPTVLPGRPPAAERQRIELLRREKE 107 Query: 138 QQSEHCKNSLTRDSEK-GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + ++ L S + T + ++ E N + E L + L +A Sbjct: 108 SMTSIARDILNVLSPLISSGKVRVTQTSRGVSIEINASVLFAPGEASLTNESGAALSAIA 167 Query: 197 KKISSTLSGLVADNIVKGVLF 217 + +S + + + Sbjct: 168 QVLSQDTHAIQIEGHTDNLPI 188 >gi|16080024|ref|NP_390850.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis str. 168] gi|221310916|ref|ZP_03592763.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis str. 168] gi|221315243|ref|ZP_03597048.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320160|ref|ZP_03601454.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis str. JH642] gi|221324441|ref|ZP_03605735.1| flagellar motor protein MotS [Bacillus subtilis subsp. subtilis str. SMY] gi|732300|sp|P39064|YTXE_BACSU RecName: Full=Uncharacterized protein YtxE gi|348049|gb|AAA68283.1| putative [Bacillus subtilis] gi|2293223|gb|AAC00301.1| YtxE [Bacillus subtilis] gi|2635456|emb|CAB14950.1| putative flagellar motor apparatus component [Bacillus subtilis subsp. subtilis str. 168] gi|291485404|dbj|BAI86479.1| flagellar motor protein MotS [Bacillus subtilis subsp. natto BEST195] Length = 242 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 11/194 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 DL K SI KE N P + ++K + K+ +D ++ ++ + DN +K Sbjct: 49 DLQKFKAAVDSIQKEGNGLQPDQTSIEKKNTSPSDTKKQEDQQDQLLKKVNTYIKDNHLK 108 Query: 214 GVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + G+++ + + +FD + L +L +I +L I + GHT Sbjct: 109 AQMTAKRDERGVVLVL---QEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHT 165 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328 D+ NW LS RA Q K + R + G+A + ++ Sbjct: 166 DSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAV-GYADTKPVKDNKTNEHM 224 Query: 329 SANRRIDILVEDRQ 342 NRR++I+++ + Sbjct: 225 KENRRVEIVIKKSK 238 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ + SW + + D +T+++ FF++++ ++ D KA G L Sbjct: 10 RRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGNGLQP 69 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 I + P S K + D+ + K + +K + +R E + Sbjct: 70 DQTSIEKKNTSP--SDTKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV 120 >gi|78221681|ref|YP_383428.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78192936|gb|ABB30703.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 267 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 6/201 (2%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + + S + STD+ + S+ + + + + +D ++ + Sbjct: 59 TTIQGSAAKPVVIDSTDMRIIPTITPDLINKGRSQGQKMGGRARAEEKDFRAIKAAMEAY 118 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 LV V T+ G+++S+ + FD S+I +L K+ E LA + Sbjct: 119 LVKQGAQAKVSVGITQRGLVVSL---KEAGFFDSGSAIVRESAYPLLAKVAESLAGYSNA 175 Query: 266 ISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322 + + GHTD P + + NW LS RA + L KS + +GF +R Sbjct: 176 VRVEGHTDTMPISSPLFPSNWELSTARATNIVHFLTKSYDFQPSAISAAGFGEYRPIADN 235 Query: 323 ASDPMNSANRRIDILVEDRQG 343 A+ S NRR+DI++ +G Sbjct: 236 ATAEGRSKNRRVDIVLLSGEG 256 >gi|15895120|ref|NP_348469.1| flagellar motor protein MotB [Clostridium acetobutylicum ATCC 824] gi|15024821|gb|AAK79809.1|AE007693_7 Flagellar motor protein MotB [Clostridium acetobutylicum ATCC 824] gi|325509259|gb|ADZ20895.1| Flagellar motor protein MotB [Clostridium acetobutylicum EA 2018] Length = 254 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 10/202 (4%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + GK + + + P ++ + K + QD+ +I + Sbjct: 50 SQEFSAIFSSGKGVLVESGTGNGVVSSMKESTPSNAQSESNNSKIE---QDMMNEIKKNI 106 Query: 204 SGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 VA+N + + T G+ ISI D +F S L +L +I +++ Sbjct: 107 DQKVAENGYTDKIKSKITEEGLAISIQDI---ILFRSGDSTVLANIQPMLIEISKMIHSL 163 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD P NW LS RA + + ++ SG +++ I + + + Sbjct: 164 DNNIKVTGHTDNIPIATETFHSNWELSASRALNVMKFMVTSGGVDEKRFSIQAYGEYSPE 223 Query: 322 --IASDPMNSANRRIDILVEDR 341 +++ + NRR++I + + Sbjct: 224 ETNSTEQGRARNRRVEIFILRK 245 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 25/186 (13%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD +T+L+A F+VM+ ++ D+ + + Q F+ + ++ KG+ E Sbjct: 17 WLIPYADMLTLLLALFIVMFAMSKVDNKKLQKMSQEFSA----IFSSGKGVLVES----- 67 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + N + S+ E N+ + E+N + +E KN + +E Sbjct: 68 GTGNGVVSSMKESTPSNA---------------QSESNNSKIEQDMMNEIKKNIDQKVAE 112 Query: 153 KG-KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 G D KS E+ + + S + + + L +++K I S + + Sbjct: 113 NGYTDKIKSKITEEGLAISIQDIILFRSGDSTVLANIQPMLIEISKMIHSLDNNIKVTGH 172 Query: 212 VKGVLF 217 + Sbjct: 173 TDNIPI 178 >gi|115360213|ref|YP_777351.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115285501|gb|ABI91017.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 228 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + L+ L A + GI I I +F+ + LP+ VL +I Sbjct: 85 ERAPAWLTSLDALKTNGRISLVRAPHGIEIGI---DAKILFNVGDARLLPDATPVLSEIA 141 Query: 257 EVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L+ H+T I + GHTD++P N NW LS RA S + L + GV+ R++ I G Sbjct: 142 RALSEHATGDILVEGHTDSAPIANAKYESNWELSSARAGSVVRYLAERGVAPHRLAAI-G 200 Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338 A + +A D P + NRR+ I V Sbjct: 201 RADTQPLVAGDDAPARARNRRVTIFV 226 Score = 39.1 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 G W I YAD +T LM FL ++++ A++ + ++ AS + Sbjct: 24 GTQSGRWLISYADLITTLMVLFLALYVLQLA---KYNALDARYQTLARHDGGASSVMAAA 80 Query: 87 QNPPERSS 94 PER+ Sbjct: 81 PATPERAP 88 >gi|148265913|ref|YP_001232619.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146399413|gb|ABQ28046.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 287 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 11/189 (5%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 ++L + I EN L +++ +Q +K L + ++ V Sbjct: 103 SELRQKIADLENENAKLKEDIASLKKAKEEEVQKTSKTYEDLLEKMKSEISQGQVTISEL 162 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 + + ++++D +FD + P+ +VVLQK+ ++L + + I I GHTD Sbjct: 163 KGKLTVNMVD---AVLFDSGKAEVKPDGLVVLQKVIDILKNIKDKSIRIEGHTDNVSIVG 219 Query: 280 I----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 NW LS RA + + L + G+ ++ I+ + + +D + NRR Sbjct: 220 ALAKKYPTNWELSAARAINVTRYLQQQGIDPTNLAAIA-YGEFKPVAGNDTPEGKAKNRR 278 Query: 334 IDILVEDRQ 342 I+I++ ++ Sbjct: 279 IEIILVPKE 287 >gi|302342669|ref|YP_003807198.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301639282|gb|ADK84604.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 244 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 7/149 (4%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + V E G + I+ + +F+ SS P+ + VL+ I +V Sbjct: 98 IMQDIREVTDQKNLDDV-VEVIDQGDKV-ILRVKGQLLFNTGSSDINPQALGVLKAIADV 155 Query: 259 LAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + ++GHTD+ P ++ NW LS RA + + L++ GVS R++ +G+A Sbjct: 156 VDRNPGWRLDVKGHTDSRPISSVKFASNWELSSLRATAVLRYLIEQGVSPSRLTA-TGYA 214 Query: 317 HHRLKIAS--DPMNSANRRIDILVEDRQG 343 + + + + NRR++ ++E ++G Sbjct: 215 DTQRLVPDSSEENMARNRRVEFVLEKQKG 243 Score = 46.4 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 DD W + YAD +T+L+ FF++M + D + + I + I Sbjct: 15 DDAGEEGREWLVTYADMVTLLLTFFVMMLSLARLDTERFEQIVTSIQYSLGASVAPGGRI 74 >gi|291286231|ref|YP_003503047.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883391|gb|ADD67091.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 247 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 8/171 (4%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISI 228 +E ++ + + + ++ + +K++ +L V + + V T+ G+ + I Sbjct: 60 KEGNKTEMTQEDIMSRLSFVQNVRSVQRKVTKSLREYVKSAQMSQVVTIAETKKGVSVRI 119 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRL 287 +D+ +F S+ L + +L K+ V+ S I + GHTD P NW L Sbjct: 120 LDKM---LFKSGSAEILDQGKPLLDKLAAVIEESPFNIMVEGHTDDIPISTALYPSNWEL 176 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 S RA S + M VS R+S SG+A + + NRR+++ Sbjct: 177 STARAVSVVKYFMSKDVSAQRLSA-SGYAEYHPVTPNISAASREKNRRVEV 226 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K ++ W ++D T+LM FF+++ + + D K L Sbjct: 3 KKKCEECKPGAPMWMSTFSDMATLLMTFFILLLSMASMDKRKIKVALGSLQGSLGVLKEG 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 +K +++ R S + S+ +TK+ + Sbjct: 63 NKTEMTQEDIMSRLSFVQNVRSVQRKVTKSLREY 96 >gi|254491758|ref|ZP_05104937.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224463236|gb|EEF79506.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 306 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 12/230 (5%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 I S N+ K + S+ +S++ +GK + + EK+ K + Sbjct: 35 YSISSVNEGKYRVLSDTLEAVFSDPVRSKNPIQIGEISRGEGKLTAEPGEPEKADYKIDL 94 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 +P + + +++L K++S L+ ++ + V+ + + + I + Sbjct: 95 PEIPH--RPPPATENDIRTIKELTKQLSGALADMIE---TEDVIIKQGEDWLELEI---K 146 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDR 291 + +F+ + + V+ KI ++L S I + G TD +P + NW LS R Sbjct: 147 SRVLFESGEARLERAAVPVIGKIADILQTSANPIQVEGFTDNNPINTSRFPSNWELSAAR 206 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 A S +L + G+ DR+S I G+ ++ A++ NRR+ ++V Sbjct: 207 AASVVHLLDRYGIQPDRMSAI-GYGEYKPIADNATEEGRQKNRRVVLVVL 255 >gi|326203246|ref|ZP_08193111.1| OmpA/MotB domain protein [Clostridium papyrosolvens DSM 2782] gi|325986504|gb|EGD47335.1| OmpA/MotB domain protein [Clostridium papyrosolvens DSM 2782] Length = 258 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 16/208 (7%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 QQ +S + E+ + + I+ P + + ++++ L + Sbjct: 44 QQLSQSLSSAFGNGERPSVVQGGSSGNSLIDFPATMPSPVIPSKI-----EDQQMEALQE 98 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +IS + ++ + V GI+++I +F S+I P + KIG+ Sbjct: 99 EISGLVD---SEGLKGNVSVTMQERGIVVTI---NEKILFKSGSAIIEPNDQDTVIKIGK 152 Query: 258 -VLAHSTEV-ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L+ I + GHTD P ++ NW LS RA + ++L+ G ++ Sbjct: 153 DILSKIPNKHIRVEGHTDNIPMKSALYPSNWELSAARAINVLKLLVDKGGINPKMIAPVP 212 Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340 + + + + D + NRR+DI++ Sbjct: 213 YGEYSPLVPNTTDINRAKNRRVDIVILR 240 >gi|238927470|ref|ZP_04659230.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531] gi|238884752|gb|EEQ48390.1| flagellar motor protein B [Selenomonas flueggei ATCC 43531] Length = 308 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 12/183 (6%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + + S + MK + L + KK+ + +N+ V E T Sbjct: 67 SGMGPSTAPSPPTMTNGANTADAAYMKENQDLSEAQKKLDQYIK---DNNLQDQVSTELT 123 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G+++ + + +F S++ + ++ I VLA E ++I GHTD P Sbjct: 124 EEGLMVRL---KEKALFSSGSAVLQGDAEKIVPVIAGVLASLPERVTISGHTDNVPISTA 180 Query: 281 AR-DNWRLSLDRAYSAYQ--VLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 NW LS RA S + + ++ ++ R S + G++ +R ++D + NRR++ Sbjct: 181 QYPSNWELSSARAVSLMRGVMAVQPSLNPARFSAL-GYSEYRPIASNDTEEGRAQNRRVE 239 Query: 336 ILV 338 + + Sbjct: 240 VFI 242 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK +W + Y+D MT+L+A F+ ++ ++ TD +A+ Q F Sbjct: 3 RKKRGKPHEEELNEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 F P S + + + + S QKK Q +++N S Sbjct: 60 MGGPSFFSGMGPSTAPSPPTMTNGANTADAAYMKENQDLSEAQKKLDQYIKDNNLQDQVS 119 >gi|254519411|ref|ZP_05131467.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA] gi|226913160|gb|EEH98361.1| chemotaxis motB protein [Clostridium sp. 7_2_43FAA] Length = 246 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 11/208 (5%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 +E K+ + + +E ++ E + +++ I + + + K Sbjct: 42 DAEKTKSISNAFTSMMSGQNGDSIMEYNMYNGEVPLIGGETEDNIEGGESLTEQEKMYKN 101 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + ++ +N+ V + G++I + D +F+ SSS E+ VL KI + Sbjct: 102 VKEFVNE---NNLGSVVDIIDNKRGVIIQLRDN---VLFETSSSDLREESKEVLNKINSL 155 Query: 259 LAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 +A I + GHTD P + NW LS DRA + + ++ G R S +G+ Sbjct: 156 IASIDNQILVEGHTDNRPINTSRFPSNWELSADRAVNVVKYFIEVMGQDPSRFSA-AGYG 214 Query: 317 HHRLKIASDPMN--SANRRIDILVEDRQ 342 + +D + NRR+DIL+ + Sbjct: 215 EYHPVAPNDTYENMAKNRRVDILIVTTE 242 >gi|317129962|ref|YP_004096244.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474910|gb|ADU31513.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522] Length = 258 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 8/181 (4%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E K++ + E L K+++ Q L + L L A+N+ + + Sbjct: 71 PAEDRDTKDDPFDNEVDPFENFLDSKKEENNQQLDDLLVEVLDFLEANNLYESISASRDD 130 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 G+++ + +Q +F+ + + + + L K+G ++ I + GHTD+ P Sbjct: 131 RGVVLVLQEQ---VLFESARAELISDATAFLDKVGTLIESVPNPIMVEGHTDSRPIETFQ 187 Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 NW LS RA S + L+ + + + R + G+ R + + NRR+ I+ Sbjct: 188 FPSNWELSGARASSVIRYLVDNHDLDQSRFVSV-GYGDTRPIAPNTTNENLQKNRRVVIV 246 Query: 338 V 338 + Sbjct: 247 I 247 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 2/105 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ +T W + ++D MT+++ FF++++ ++ D +A+ + F + L Sbjct: 1 MIRRRRQGNTEKGAPKWMVTFSDLMTLILVFFVLLFSMSVVDGQKFQAVAESFQ--DRAL 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 + NP E + +N +D K NQ+ Sbjct: 59 FEFYPSLIPFDNPAEDRDTKDDPFDNEVDPFENFLDSKKEENNQQ 103 >gi|116620375|ref|YP_822531.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223537|gb|ABJ82246.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 188 RKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R L D+ +K+ L + + V F T G+ I +++ F S P Sbjct: 77 RTDGLLDIRRKLEEALRAMPEFSKLRDNVKFSVTGEGLRIDLLENDQGMFFVSGSPAPTR 136 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI----ARDNWRLSLDRAYSAYQVLMKS 302 +L+ + + + I GHTDA PFRN NW L+ DRA +A ++L Sbjct: 137 AGEELLRVLAREIGRLPNSLVIEGHTDAKPFRNARPAEGYSNWELAADRANAARRLLHLF 196 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 GV +++ ++ GFA + D ++ NRR+ ++V+ Sbjct: 197 GVRPEQVVEVRGFADQKPFNERDRFDARNRRVSVVVK 233 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 + + G+WK+ YADF+T LMA F+V+W++N++ K +I YF Sbjct: 3 VRFRPAPGHRSGSGAWKVAYADFVTALMALFIVLWLMNSSTK-VKSSISGYFRDPRGFTR 61 Query: 78 TASKGIFDEQNPPERSSQNKIDL 100 T G + + +D+ Sbjct: 62 TLGAGPANSGEGLSLRTDGLLDI 84 >gi|322806981|emb|CBZ04551.1| flagellar motor rotation protein MotB [Clostridium botulinum H04402 065] Length = 247 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPARFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241 >gi|88704268|ref|ZP_01101982.1| flagellar motor protein MotB [Congregibacter litoralis KT71] gi|88701319|gb|EAQ98424.1| flagellar motor protein MotB [Congregibacter litoralis KT71] Length = 272 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 111/328 (33%), Gaps = 70/328 (21%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N+ W + YADF+T+L AFF+VM+ +A + + + Sbjct: 1 MARRKPPESVDNH-ERWLVSYADFITLLFAFFVVMYSTSAVNVGNFRVLSDSI-----VR 54 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G+ + + P+ + + Sbjct: 55 AFGLPGVSYDPSRPDGDGTQSSRIGLP--------------------------------- 81 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 D+E+ S + N L + E+ +A Sbjct: 82 -----------QLDAERDAVRVPLQAAANSASTNPNAALGDIQAEEEIAG---------- 120 Query: 197 KKISSTLSGLVADNIV-KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + + L V D + + + I I +F S L +I +LQ++ Sbjct: 121 --VETALQSAVGDLVAPDRLAITGNDKWLEIKI---PARMLFPSGSRSLLASSIPMLQRL 175 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E L + ++GHTD P RN NW LS RA + +V G+ R+S + G Sbjct: 176 AETLGGLPNEVVVQGHTDNQPIRNGQFPSNWELSTARAAAVARVFEDEGIDPSRLSAV-G 234 Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340 F +R + + + NRR+ ILV Sbjct: 235 FGPNRPITDNLTEESRAENRRVVILVRS 262 >gi|170700356|ref|ZP_02891367.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170134743|gb|EDT03060.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 228 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 8/146 (5%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + L+ L A + GI I I +F + LP+ VL +I Sbjct: 85 ERAPAWLTSLDALKTNGRISLVRASHGIEIGI---DAKILFSVGDARLLPDATPVLSQIA 141 Query: 257 EVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L+ H+T I + GHTD+ P N NW LS RA S + L GV+ R++ I G Sbjct: 142 RALSEHATGDILVEGHTDSVPIANAKYESNWELSSARAGSVVRYLADRGVAPHRLAAI-G 200 Query: 315 FAHHRLKIASD--PMNSANRRIDILV 338 A + +A D P + NRR+ I V Sbjct: 201 RADTQPLVAGDDAPARARNRRVTIFV 226 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 G W I YAD +T LM FL ++++ Sbjct: 24 GAQSGRWLISYADLITTLMVLFLALYVLQ 52 >gi|153940977|ref|YP_001391952.1| chemotaxis motB protein [Clostridium botulinum F str. Langeland] gi|152936873|gb|ABS42371.1| chemotaxis motB protein [Clostridium botulinum F str. Langeland] gi|295319971|gb|ADG00349.1| chemotaxis motB protein [Clostridium botulinum F str. 230613] Length = 247 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241 >gi|148380609|ref|YP_001255150.1| chemotaxis MotB protein [Clostridium botulinum A str. ATCC 3502] gi|153936730|ref|YP_001388364.1| chemotaxis motB protein [Clostridium botulinum A str. Hall] gi|148290093|emb|CAL84212.1| putative chemotaxis MotB protein [Clostridium botulinum A str. ATCC 3502] gi|152932644|gb|ABS38143.1| chemotaxis protein MotB [Clostridium botulinum A str. Hall] Length = 247 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRAKNRRVNIVIVSKE 241 >gi|167463460|ref|ZP_02328549.1| flagellar motor protein MotB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 258 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 14/204 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K S + S ++ + ++ + + +++K LQD+ K + + + Sbjct: 62 KESNSILSMNSGVSGQNMPPKSTVGEITDKKTKERQAAAADMERKEKELQDILKTVQAYI 121 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +++ + + G+ +++ D +FD + PE VL K+ + Sbjct: 122 EE---NHLEAQIAVGNSERGVSVTLKDL---FLFDLGKAELKPEAYPVLNKLASLFPTLD 175 Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG---VSEDRISKISGFAHH 318 ISI GHTD P R + DNW LS R+ S + +S+ + +G+A Sbjct: 176 TKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTTKADPKISDSKFMS-TGYADT 234 Query: 319 RLKIASDPM--NSANRRIDILVED 340 +D M + NRR++I++ Sbjct: 235 IPVAPNDSMENRAKNRRVEIVILR 258 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---PFGKN 75 ++ + N W + YAD +T+L+AFF++M+ ++ D + + + Q + + Sbjct: 7 RRSKKPEEHVNHERWLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKESNS 66 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 +++ + G+ + PP+ + D E Sbjct: 67 ILSMNSGVSGQNMPPKSTVGEITDKKTKER 96 >gi|311067881|ref|YP_003972804.1| flagellar motor protein MotB [Bacillus atrophaeus 1942] gi|310868398|gb|ADP31873.1| flagellar motor protein MotB [Bacillus atrophaeus 1942] Length = 262 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 8/191 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214 D T E + K++ K Q+ + + + + D ++ Sbjct: 66 DYSSVTPPESEQQGIDQLEDEKKKKKEKQEAADKTADQEELENVEKQVKQFIKDKKLENQ 125 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T G+LI+I D FD + + I + ++I ++L + I I GHTD Sbjct: 126 LETKLTDEGLLITIKDS---IFFDSGKATIREQDIPLAEEISDLLVLNPPRNIIISGHTD 182 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P +N NW LS+ RA + +L+++ + ++ GF ++ +D S Sbjct: 183 NMPIKNSQFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGFGEYKPVATNDTAEGRSK 242 Query: 331 NRRIDILVEDR 341 NRR+++L+ R Sbjct: 243 NRRVEVLILPR 253 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 17 IKKKVAIDDTPNN-LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + +K + SW + YAD +T+L+A F+V++ ++ D K + + FN Sbjct: 1 MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLFASSSVDAAKFKMLSKSFN----E 56 Query: 76 LMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + T G+ D + P S Q ID DE K T +++ + +E + Sbjct: 57 VFTGGTGVMDYSSVTPPESEQQGIDQLEDEKKKKKEKQEAADKTADQEELENVEKQVKQF 116 Query: 135 SNSQQSE 141 ++ E Sbjct: 117 IKDKKLE 123 >gi|260886728|ref|ZP_05897991.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185] gi|330839448|ref|YP_004414028.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185] gi|260863580|gb|EEX78080.1| chemotaxis protein MotB [Selenomonas sputigena ATCC 35185] gi|329747212|gb|AEC00569.1| OmpA/MotB domain protein [Selenomonas sputigena ATCC 35185] Length = 303 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 12/213 (5%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 ++ +S + S+ + + + + K ++ K Sbjct: 36 LYAMSATDSSKMAQMAQAFTAAFNTGGPSFFSQMGPSESRHAERVATEDKGNSAYIQEAK 95 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+++ K++ + + + + + T G++I I + +F S+ + E Sbjct: 96 ALEEVQKELDNYIKQ---NGLQGELNTTMTDDGLMIRI---KEKALFPSGSAELVGEAQK 149 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG--VSED 307 + + +LA E + I GHTD P NW LS RA + + L S ++ Sbjct: 150 IGPVVAGLLAKIPERVVISGHTDNVPIATARYPSNWELSSQRALNFMKFLFASNTSLNPA 209 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILV 338 R S I G++ +R +D S NRR+++L+ Sbjct: 210 RFSSI-GYSEYRPIADNKTDEGRSQNRRVEVLI 241 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK +W + Y+D MT+L+A F+ ++ ++ATD + Q F Sbjct: 3 RKKRHAPHEEEAGEAWLLPYSDLMTLLLATFIALYAMSATDSSKMAQMAQAFTA---AFN 59 Query: 78 TASKGIFDEQNPPE 91 T F + P E Sbjct: 60 TGGPSFFSQMGPSE 73 >gi|302875899|ref|YP_003844532.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|307689333|ref|ZP_07631779.1| chemotaxis MotB protein [Clostridium cellulovorans 743B] gi|302578756|gb|ADL52768.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B] Length = 245 Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 11/153 (7%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ +L K+ ++ + V+ E + G+ ISI D +F+ + L E Sbjct: 98 NKMHELKAKLDQEIA---REGYSDKVITELNKDGLYISIQD---VILFNSGDANVLKEVS 151 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSG-VSED 307 +L +I ++ I I GHTD P + R NW LS RA + ++ +G ++ + Sbjct: 152 PLLTEISHLIRDIDNRIRIVGHTDNVPISTVKFRSNWDLSAMRAINVMNFMVDTGKLNPE 211 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++ I + + + + + NRR++I + Sbjct: 212 KV-SIQAYGEYMPRFDNSTAENRARNRRVEIFI 243 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W I YAD +T+L+A F+VM+ ++ D+ + Q N + Sbjct: 3 KKKQHHEEHVDETWLIPYADMLTLLLALFIVMFAMSKLDNQKVSQVSQQLNA----IFAG 58 Query: 80 SKGIF 84 GI Sbjct: 59 GSGII 63 >gi|228964710|ref|ZP_04125817.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228794960|gb|EEM42459.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 223 Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 13/219 (5%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G ++ ++ L + S + K L K +D + K + Sbjct: 5 GPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTGQVDAKVMENTI 64 Query: 176 PPLSKEK-ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P +S EK + KKR+ +L KK+ + V +N + V TG+ + I+D Sbjct: 65 PDISHEKNDEKIISKKRMDELYKKLKA----YVDNNGISQVNVYREDTGVSVVIVDN--- 117 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDR-A 292 +FD + PE ++ ++ I + GHTD+ P N NW LS R A Sbjct: 118 LIFDTGDANVKPEAKGIISQLVGFFQSVPNPIVVEGHTDSRPIHNEKFPSNWELSSARAA 177 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 + ++ V + R++ + G+A + + +D + N Sbjct: 178 NMIHHLIEVYNVDDKRLAAV-GYADTKPIVPND--SPQN 213 >gi|297583574|ref|YP_003699354.1| OmpA/MotB domain-containing protein [Bacillus selenitireducens MLS10] gi|297142031|gb|ADH98788.1| OmpA/MotB domain protein [Bacillus selenitireducens MLS10] Length = 256 Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 11/188 (5%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + D + + + P S ++ ++ ++L DL ++++ + +++ + + Sbjct: 67 ENPAEDRDVRDDPFDADVDPFESHMEMDEVEMSEQLDDLLEEVNEFIE---DNDLTENIS 123 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G+++ + +Q +F+ + + LP+ L+K+G ++ ++ + GHTD+ P Sbjct: 124 ATRDDRGVVLVLQEQ---ALFETARAEILPQAEPFLEKVGTLVTTVPNMVKVEGHTDSRP 180 Query: 277 FRNIA-RDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 + NW LS RA S +L V E R + G+ R + + NR Sbjct: 181 INTVQFPSNWELSGARASSVIRFILSNFDVDERRFLAV-GYGETRPVAPNTTPDNLQQNR 239 Query: 333 RIDILVED 340 R+ I++ D Sbjct: 240 RVVIVISD 247 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 2/117 (1%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 P W + ++D MT+++ FF++++ ++ D + +AI + F + + Sbjct: 3 RKKKQGPKGAPKWMVTFSDLMTLILVFFILLFSMSVVDANRFEAIAESFQ--ERAIFDFY 60 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + +NP E D ++ +++ +++ E N F N Sbjct: 61 PSLIPFENPAEDRDVRDDPFDADVDPFESHMEMDEVEMSEQLDDLLEEVNEFIEDND 117 >gi|296332050|ref|ZP_06874514.1| flagellar motor protein MotS [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675555|ref|YP_003867227.1| putative flagellar motor apparatus component [Bacillus subtilis subsp. spizizenii str. W23] gi|296150821|gb|EFG91706.1| flagellar motor protein MotS [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413799|gb|ADM38918.1| putative flagellar motor apparatus component [Bacillus subtilis subsp. spizizenii str. W23] Length = 236 Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 11/191 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 DL K SI KE P + ++K + K+ +D ++ ++ + DN +K Sbjct: 49 DLQKFKAAVDSIQKEGGGLQPDQTSIEKKNTSPADAKKQEDQQDQLLKKVNTYIKDNHLK 108 Query: 214 GVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + G+++ + + +FD + L +L +I +L I + GHT Sbjct: 109 AQMTAKRDERGVVLVL---QEAVLFDSGEAKVLKNAETLLHQIAVLLQTIPNDIQVEGHT 165 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328 D+ NW LS RA Q K + R + G+A + ++ Sbjct: 166 DSRNISTYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAV-GYADTKPVKDNKTNEHM 224 Query: 329 SANRRIDILVE 339 NRR++I+++ Sbjct: 225 KENRRVEIVIK 235 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 2/113 (1%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ ++ SW + ++D +T+++ FF++++ ++ D KA G L Sbjct: 10 RRNGSGKNSHSSSSWMVTFSDLITLILVFFILLFSMSQIDLQKFKAAVDSIQKEGGGLQP 69 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 I + P + K + D+ + K + +K + +R E + Sbjct: 70 DQTSIEKKNTSP--ADAKKQEDQQDQLLKKVNTYIKDNHLKAQMTAKRDERGV 120 >gi|226950064|ref|YP_002805155.1| chemotaxis motB protein [Clostridium botulinum A2 str. Kyoto] gi|226842943|gb|ACO85609.1| chemotaxis motB protein [Clostridium botulinum A2 str. Kyoto] Length = 247 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI +++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINDLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD S NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRSKNRRVNIVIVSKE 241 >gi|322421651|ref|YP_004200874.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320128038|gb|ADW15598.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 254 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 10/195 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR--LQDLAKKISSTLSGLVADNI 211 G + I+ +P + K + + R QD +S + L+ Sbjct: 58 GYSTTSAGAKPTVIDSGAMSIVPSIHKMTQAPKRGRSRGSEQDFRATKASIEAYLMKMGA 117 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V T+ G+++S+ + FD S+ + +L + LA + + + GH Sbjct: 118 QSKVSISVTQRGLVVSL---KEAGFFDSGSATLKQSSFSLLNDVVTSLASYSNSVRVEGH 174 Query: 272 TDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPM 327 TD P + NW LS RA + Q L K RIS +G+ +R + + Sbjct: 175 TDNIPISSASFPSNWELSTARATNVLQYLTKQEDFDPARISA-AGYGEYRPVADNGDEEG 233 Query: 328 NSANRRIDILVEDRQ 342 NRR+DI++ Q Sbjct: 234 RGKNRRVDIVLLSEQ 248 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 8/132 (6%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K+ A + N W + YADF+T+L A F+ ++ ++ TD + + Sbjct: 1 MAKRKAQHEKEPNHERWLVSYADFITLLFAVFVTLYAMSQTDKKKAEEVLSSMR------ 54 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 S G + + + +SI I K + K G + +Q R Sbjct: 55 --ESFGYSTTSAGAKPTVIDSGAMSIVPSIHKMTQAPKRGRSRGSEQDFRATKASIEAYL 112 Query: 137 SQQSEHCKNSLT 148 + K S++ Sbjct: 113 MKMGAQSKVSIS 124 >gi|39996116|ref|NP_952067.1| chemotaxis MotB protein [Geobacter sulfurreducens PCA] gi|39982881|gb|AAR34340.1| chemotaxis MotB protein, putative [Geobacter sulfurreducens PCA] Length = 289 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-TDLEKSINKEENYFLPPLSKEKIL 184 + E + + + K L ++ +L + +++ E + Sbjct: 67 KDEAAGLAQDKEKLTADNRELQQVLQAKSDSLSQNIVELRQKVSQLEAENARLKADIAST 126 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +++++++++K L + + V + + ++++D +FD + Sbjct: 127 QKAKEEQVREVSKTYEDLLDKMKGEIAQGQVTISELKGKLTVNMVD---AILFDSGKAEV 183 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN----IARDNWRLSLDRAYSAYQVL 299 P + +LQK+ E+L + I I GHTD NW LS RA + + L Sbjct: 184 KPAGMDLLQKVVEILKDVKDKAIRIEGHTDNVQIVGNLAKRFPTNWELSSARAINVTRFL 243 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 G+ +S ++ + + +D + NRRI+I++ + Sbjct: 244 QSRGIDPAVLSAVA-YGEYHPVAPNDTDEGKAKNRRIEIILVPKDA 288 >gi|253577343|ref|ZP_04854660.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843243|gb|EES71274.1| OmpA/MotB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 269 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 91/218 (41%), Gaps = 12/218 (5%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + + S+ + T ++ + + I ++ ++K+ L + Sbjct: 44 DAMKFQEMSEAFKSVLTGGTSVLDQNAMISNNKTSLSEIETPKSTQDGLMTKKNELKRQE 103 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ L+ L K++ + + + + + + ++ ++I+I D +F ++ PE Sbjct: 104 QQNLEALKKQLDTYIKE---NGLTDDLETKLNQSQLMITISD---KALFASGEAVVKPEA 157 Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQV-LMKSGVS 305 + + I +L + + GHTD P NW LS RA + ++ L+ + + Sbjct: 158 RQLAKAISNMLQQFPDYEVIVSGHTDNVPISTYEFPSNWDLSSVRALNFMKILLLNTNLD 217 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + S I G+ + ++D + NRR+++ + + Sbjct: 218 PKKFSAI-GYGEYHPVASNDTAAGRAQNRRVEVSIIRK 254 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 21/204 (10%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 K K D + SW + Y+D MT+++A F+V++ ++ D + + + F +++ Sbjct: 4 KNKKHQDHEEHADESWLLPYSDLMTLMLALFIVLYGMSTVDAMKFQEMSEAFK----SVL 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T + D+ + + ++ + + G +K + +R E Sbjct: 60 TGGTSVLDQNAMISNNKTSLSEIETPKST-------QDGLMTKKNELKRQEQQNLEALKK 112 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q + K ++ + + L +I+ + + K + LAK Sbjct: 113 QLDTYIKE--NGLTDDLETKLNQSQLMITISDKALFASGEAVV--------KPEARQLAK 162 Query: 198 KISSTLSGLVADNIVKGVLFETTR 221 IS+ L ++ + Sbjct: 163 AISNMLQQFPDYEVIVSGHTDNVP 186 >gi|92113628|ref|YP_573556.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91796718|gb|ABE58857.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 283 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 12/170 (7%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 P ++ + K R +++ +TL + GV+ + G+ I N Sbjct: 118 PAPAEALVENAKAAVREPAGVRRLPNTLKPFI-----DGVVVTQSAQGLNFRI---ENHL 169 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYS 294 +F S + E VL+++ + L I+I GHTD+ P + NW LS RA + Sbjct: 170 LFSSSQADLTDEGRAVLRQLLDSLRAFDGEITIEGHTDSRPIATDRFPSNWELSTARATA 229 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + L+ G+ + + + G+A R ++D +ANRR+++++ + + Sbjct: 230 VLRFLVGEGLDSEALRAV-GYADTRPLQSNDSAEGRAANRRVELVLHEPE 278 >gi|322383007|ref|ZP_08056837.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153030|gb|EFX45490.1| MotS-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 254 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 14/204 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K S + S ++ + ++ + + +++K LQD+ K + + + Sbjct: 58 KESNSILSMNSGVSGQNMPPKSTVGEITDKKTKERQAAAADMERKEKELQDILKTVQAYI 117 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +++ + + G+ +++ D +FD + PE VL K+ + Sbjct: 118 EE---NHLEAQIAVGNSERGVSVTLKDL---FLFDLGKAELKPEAYPVLNKLASLFPTLD 171 Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG---VSEDRISKISGFAHH 318 ISI GHTD P R + DNW LS R+ S + +S+ + +G+A Sbjct: 172 TKISIEGHTDNIPVRTGSPFQDNWGLSNARSLSVLRYFTTKADPKISDSKFMS-TGYADT 230 Query: 319 RLKIASDPM--NSANRRIDILVED 340 +D M + NRR++I++ Sbjct: 231 IPVAPNDSMENRAKNRRVEIVILR 254 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 3/92 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN---PFG 73 + ++ + N W + YAD +T+L+AFF++M+ ++ D + + + Q + Sbjct: 1 MARRSKKPEEHVNHERWLVTYADLITLLLAFFVIMYAMSKVDVNKYEVLAQSLSLQFKES 60 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 ++++ + G+ + PP+ + D E Sbjct: 61 NSILSMNSGVSGQNMPPKSTVGEITDKKTKER 92 >gi|56963749|ref|YP_175480.1| motility protein B [Bacillus clausii KSM-K16] gi|56909992|dbj|BAD64519.1| motility protein B [Bacillus clausii KSM-K16] Length = 252 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 113/327 (34%), Gaps = 88/327 (26%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++ D + +W + YAD +T+L+A F+V++ + D + + Sbjct: 5 RRPRRHDSNTHVDETWLLPYADMLTLLVALFIVLFAMGQIDQAKYDQL-----KIVLSET 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 +GI D QN Sbjct: 60 LGGQGILDNQN------------------------------------------------- 70 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 E + + +L +++ LE+S ++ L +EK LA + + L Sbjct: 71 ALDEVDEQARNTLESDPSELSEASKLERSELEQLQARLNGYIEEKQLADRLQTELGA--- 127 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +G+LI+I D +F S+ ++I +++++ Sbjct: 128 ------------------------SGLLITIND---GILFASGSAELKSDSIELIEQLSA 160 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +LA I I GHTD P N NW LS RAY+ ++ + E +G+ Sbjct: 161 MLASDPPRYIQISGHTDNVPMGNNEFDSNWELSSARAYNVMKLFFEYDHFEPAQLSFAGY 220 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 + +++ ANRR+++LV Sbjct: 221 GEYHPITSNETAEGRQANRRVEVLVLP 247 >gi|168180924|ref|ZP_02615588.1| chemotaxis motB protein [Clostridium botulinum NCTC 2916] gi|237796091|ref|YP_002863643.1| chemotaxis motB protein [Clostridium botulinum Ba4 str. 657] gi|182668356|gb|EDT80335.1| chemotaxis motB protein [Clostridium botulinum NCTC 2916] gi|229263486|gb|ACQ54519.1| chemotaxis protein MotB [Clostridium botulinum Ba4 str. 657] Length = 247 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD S NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRSKNRRVNIVIVSKE 241 >gi|168182734|ref|ZP_02617398.1| chemotaxis motB protein [Clostridium botulinum Bf] gi|182674075|gb|EDT86036.1| chemotaxis motB protein [Clostridium botulinum Bf] Length = 247 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD S NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANRSKNRRVNIVIVSKE 241 >gi|170761206|ref|YP_001787972.1| chemotaxis motB protein [Clostridium botulinum A3 str. Loch Maree] gi|169408195|gb|ACA56606.1| chemotaxis protein MotB [Clostridium botulinum A3 str. Loch Maree] Length = 247 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANKAKNRRVNIVIVSKE 241 >gi|326792989|ref|YP_004310810.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427] gi|326543753|gb|ADZ85612.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427] Length = 240 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 11/152 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 Q++ K+ L ++ + V G+ +S D +FD + L Sbjct: 85 QEIQTKLKDYLET---HDLTEQVSLHVEPQGLTLSFDDN---ILFDSGKADIQSAYKKNL 138 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRIS 310 +I ++L T + + GHTD P NW L+ RA + + + G + ++S Sbjct: 139 LEICDILKTFTNDVVVEGHTDNLPIHTSQFSSNWELASIRAINVVHLFIDEGKLPASKLS 198 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340 IS + +R ++D + NRRIDI++ Sbjct: 199 AIS-YGEYRPIASNDTPEGRAKNRRIDIILLS 229 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 N W + Y+D +T+LM FF+VM+ ++ D + + + ++ Sbjct: 2 AKKKPKKENSERWLLTYSDLITLLMIFFVVMYSMSNVDSKKYEELAGSLSN-SLGILQGG 60 Query: 81 KGIFDEQNPPERSSQ 95 G+ + SS Sbjct: 61 VGMSNANAAGTDSSI 75 >gi|88812420|ref|ZP_01127670.1| flagellar motor protein [Nitrococcus mobilis Nb-231] gi|88790427|gb|EAR21544.1| flagellar motor protein [Nitrococcus mobilis Nb-231] Length = 312 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 117/330 (35%), Gaps = 51/330 (15%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLM 77 K P W +AD T+L++FF+++ + D + K I FG Sbjct: 7 KSGKRRLAPVGAPPWMATFADLSTLLLSFFVLLLSFSEMDVNKYKEIAGSMRMAFGVQRE 66 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 ++ +PP +S D S + + + + + + + + Sbjct: 67 DVTR------DPPMGTSFVARDFSPGQPSQSPFAKIAPTPMSTSEGIRPMPPRVTVAPSG 120 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 G D S + S E + + + + ++ L ++A+ Sbjct: 121 P--------------GGPDSLLSLSRQPSDAAVEQARSNLIKLQSLFRQEIERGLIEVAQ 166 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I ++ G F S+ + + ++KIG+ Sbjct: 167 -------------IGAQIVIRVREHGS------------FPSGSAKLIKPFLPAVRKIGQ 201 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGF 315 + + + I GHTD P N R NW LS RA S + L V +RI+ ++G Sbjct: 202 AIRMTEGQVIIAGHTDNVPIHNAQFRSNWDLSAARAISLLRALGAVEAVDANRIT-VAGH 260 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343 A R +++D + NRR++I++ + G Sbjct: 261 ADTRPIVSNDTPRHRARNRRVEIILVNGNG 290 >gi|170756344|ref|YP_001782268.1| chemotaxis motB protein [Clostridium botulinum B1 str. Okra] gi|169121556|gb|ACA45392.1| chemotaxis protein MotB [Clostridium botulinum B1 str. Okra] Length = 247 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + L + +D+ K+++ + +N+ V + GI+I + D Sbjct: 73 KNGDIPLVGETTKLGRETGSDAKDVYKEVNKFVD---KNNLKSSVEVKEDGRGIIIQLRD 129 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + P++ ++ KI ++A + I GHTD P +N NW LS Sbjct: 130 N---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIIEGHTDNVPIKNEVYGSNWELST 186 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 187 ARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDANKAKNRRVNIVIVSKE 241 >gi|149183513|ref|ZP_01861940.1| flagellar motor protein MotB [Bacillus sp. SG-1] gi|148848785|gb|EDL63008.1| flagellar motor protein MotB [Bacillus sp. SG-1] Length = 253 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L +K+ +Q+L K + A+ + E T G+L++I D +F S++ Sbjct: 93 LEAAKKREMQELKKLQDRVNGYIAANELQTQFATELTSEGLLLTIRDN---VLFQSGSAV 149 Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301 + + +++ +L + + I GHTD P NW LS+ RA + ++++K Sbjct: 150 VGAKDEGIAKELSGLLEMDTPRSVIISGHTDNVPISTANYESNWELSVMRAVNFMKIILK 209 Query: 302 SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + R GF + ++D + NRR+++L+ R Sbjct: 210 NQNLDPRWFSAKGFGEFKPMASNDTSEGRAKNRRVEVLILPR 251 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + SW I YAD +T+L+A F+V++ ++ D +A+ + FN + Sbjct: 3 RRRKKHHHEEHVDESWLIPYADVLTLLLALFIVLFASSSVDAQKFQAMSKAFN----EIF 58 Query: 78 TASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G+ + P PE + ++ +T + ++ Q+ + + N + +N Sbjct: 59 VGGTGVMEYPTPVPETDAGDRNKNEEQNSLTVDELEAAKKREMQELKKLQDRVNGYIAAN 118 Query: 137 SQQSEHCKN 145 Q++ Sbjct: 119 ELQTQFATE 127 >gi|308173338|ref|YP_003920043.1| motility protein MotB [Bacillus amyloliquefaciens DSM 7] gi|307606202|emb|CBI42573.1| motility protein B; MotB component of the stator flagellum complex [Bacillus amyloliquefaciens DSM 7] gi|328911414|gb|AEB63010.1| motility protein B; MotB component of the stator flagellum complex [Bacillus amyloliquefaciens LL3] Length = 267 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 123/332 (37%), Gaps = 79/332 (23%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK D + SW I YAD +T+L+A F+V++ +++ D + + + FN Sbjct: 3 RKKKKKHDDEHVDESWLIPYADLLTLLLALFIVLFAMSSVDAAKFQMLSKSFNAV----F 58 Query: 78 TASKGIFDEQN--PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 T G+ + + PPE L D+ K K +++ R E Sbjct: 59 TGGTGVLEYSSVTPPENEKDGIDQLKKDKDKEKEKEKDKEQKKKEREAADRQE------- 111 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 L + K+ +K KK L Sbjct: 112 ---------------------------------------LEGVQKQVNQFIKNKKLEHQL 132 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K++ G+LI+I D + FD ++ E I + ++I Sbjct: 133 ETKLTK--------------------EGLLITIKD---SIFFDSGQAVIRQEDIPLAKEI 169 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +L + I I GHTD P +N NW LS+ RA + +L ++ + ++ Sbjct: 170 SNLLVLNPPRNIIISGHTDNVPIKNSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAK 229 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 GF ++ ++ S NRR+++L++ R Sbjct: 230 GFGEYKPAASNKTAEGRSKNRRVEVLIQPRNA 261 >gi|326942295|gb|AEA18191.1| flagellar motor protein MotB [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNEEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 >gi|30022590|ref|NP_834221.1| flagellar motor protein MotB [Bacillus cereus ATCC 14579] gi|206969568|ref|ZP_03230522.1| chemotaxis protein MotB [Bacillus cereus AH1134] gi|218232559|ref|YP_002369307.1| flagellar motor protein MotB [Bacillus cereus B4264] gi|296504987|ref|YP_003666687.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171] gi|29898148|gb|AAP11422.1| Chemotaxis motB protein [Bacillus cereus ATCC 14579] gi|206735256|gb|EDZ52424.1| chemotaxis protein MotB [Bacillus cereus AH1134] gi|218160516|gb|ACK60508.1| chemotaxis protein MotB [Bacillus cereus B4264] gi|296326039|gb|ADH08967.1| flagellar motor protein MotB [Bacillus thuringiensis BMB171] Length = 262 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 >gi|94969959|ref|YP_592007.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94552009|gb|ABF41933.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 263 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 15/230 (6%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 ++Q Q + + + +Q ++ ++ + + S+ + L Sbjct: 39 SSQTDQKRAAKISSAIEQAFEQLGLGTSNPPGNTSRVAPITPEIRASSSLADRSHETLDI 98 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 S+ ++ A + + +L I L+ V TT G++IS+ + F Sbjct: 99 GSQRRVTAAQVQTLRGELQAAIPEELT-------RSDVTLRTTSDGLVISL---QEIGFF 148 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY-SA 295 D S+ P +I +I +L + + GHTD P NW LS RA Sbjct: 149 DSGSAKLRPSSISAFGRIASILREKQCTVRVEGHTDPMPIHTAQYASNWELSTARATGIV 208 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 +++ + G++ +S G+A +D + NRR+D+++ QG Sbjct: 209 KRLIQEYGINPGDLSA-GGYAEFHPVGPNDTAEGRAQNRRVDLVILSMQG 257 Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 41/122 (33%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + T N W + YADF+T+L AFF+V++ + TD I + L Sbjct: 4 RPTRQRRTRANNERWLVSYADFITLLFAFFVVLYASSQTDQKRAAKISSAIEQAFEQLGL 63 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + + + S + ++D+ Q Q L + + Sbjct: 64 GTSNPPGNTSRVAPITPEIRASSSLADRSHETLDIGSQRRVTAAQVQTLRGELQAAIPEE 123 Query: 139 QS 140 + Sbjct: 124 LT 125 >gi|329894187|ref|ZP_08270142.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] gi|328923212|gb|EGG30533.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC3088] Length = 341 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 116/343 (33%), Gaps = 50/343 (14%) Query: 45 MAFFLVMWIINATDDDTKKAIEQYFNP-------FGKNLMTASKGIFDEQNPPERSSQNK 97 MAFF+++ T+ K I K + ++ + E+ P + + Sbjct: 1 MAFFVLLLSFAETEVPKFKQISGSLKAAFGIEKIVPKITVPMARSLLVEEFTPAVAERTV 60 Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157 I+ ++ + ++ + T + + + + + + E + E G+ L Sbjct: 61 INRK-EQQSDETRLESIVKKTEDGEYDEETQLKFQQVQDVLREEINRGMAEVKIENGEIL 119 Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS----------------- 200 D + K ++ ++ ++ + +I Sbjct: 120 VNLLDPSSAGGKPDDSGSQKGGPIPQEVVEMTAKIAKVQAEIKEEISVNLVDRASGQSFG 179 Query: 201 -------------------STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 L +AD I G+ E + G I I+ N FD S Sbjct: 180 GTSDSTTSNSSEANANSKYQQLQADLADEIASGLA-EIEKQGDKI-IVRLANQGSFDSGS 237 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 + L K+G L+ + + I GHTD P R NW LS RA + L Sbjct: 238 ATLKNSFGGTLSKLGNTLSRYSGSVLIEGHTDNVPVGFSERFKSNWDLSASRAAAVADYL 297 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + S + I G+A + +D + NRRI+++V+D Sbjct: 298 LTSTPLQGGSVMIKGYADSKPLDTNDSPVGRANNRRIEVIVDD 340 >gi|297529303|ref|YP_003670578.1| OmpA/MotB domain protein [Geobacillus sp. C56-T3] gi|297252555|gb|ADI26001.1| OmpA/MotB domain protein [Geobacillus sp. C56-T3] Length = 268 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 10/186 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + E +++ + + K+ L+ + KI S + ++ + Sbjct: 78 TPPAEDEKGRQQYQQQQSQNPPSSINEGEKEELKQIQAKIDSYIHQ---KHLTGKLQTSL 134 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T G+ I+I+D +FD S+ + + +I +L + I I GHTD P Sbjct: 135 TDEGLAITILDD---ILFDSGSAEVRMKDRRLAAEISALLVMNPPRNIMISGHTDNVPIH 191 Query: 279 NIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 N NW LS+ RA + +VL+++ + R G+ ++ ++ NRR++ Sbjct: 192 NEKFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGYGEYKPIASNATAAGRMKNRRVE 251 Query: 336 ILVEDR 341 IL+ R Sbjct: 252 ILILPR 257 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 4/170 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + SW I YAD +T+L+A F+V++ + D + I + F Sbjct: 5 MAKKKKSSHEEHMSESWLIPYADLLTLLLALFIVLFASSQIDQKKFQEIARAF----STA 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G+FD Q+P E + D + + S N+ ++ + + S Sbjct: 61 FAGGTGVFDFQSPIEPITPPAEDEKGRQQYQQQQSQNPPSSINEGEKEELKQIQAKIDSY 120 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 Q T +++G + D+ E +I A+ Sbjct: 121 IHQKHLTGKLQTSLTDEGLAITILDDILFDSGSAEVRMKDRRLAAEISAL 170 >gi|218899667|ref|YP_002448078.1| chemotaxis protein MotB [Bacillus cereus G9842] gi|218542530|gb|ACK94924.1| chemotaxis protein MotB [Bacillus cereus G9842] Length = 262 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 >gi|75761764|ref|ZP_00741702.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490749|gb|EAO54027.1| Chemotaxis motB protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 256 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 >gi|229072015|ref|ZP_04205225.1| OmpA/MotB domain protein [Bacillus cereus F65185] gi|229081763|ref|ZP_04214256.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|228701608|gb|EEL54101.1| OmpA/MotB domain protein [Bacillus cereus Rock4-2] gi|228711174|gb|EEL63139.1| OmpA/MotB domain protein [Bacillus cereus F65185] Length = 234 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEAEQTKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|196248997|ref|ZP_03147697.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16] gi|196211873|gb|EDY06632.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16] Length = 191 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 10/185 (5%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + ++E ++ K K+ L + +KI + + + + T Sbjct: 2 EPITPPAAQDEQGQEREKQPSPAMSQKEKEGLAQVKEKIDVYIQE---NKLGGKLQTSLT 58 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 G+ I+I+D +FD S+ + + ++ +L + + I GHTD P N Sbjct: 59 EEGLAITILDD---ILFDSGSAEVRMKDRRLASEVAALLVMNPPRNVIISGHTDNVPIHN 115 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 NW LS+ RA + +VL+++ + R G+ ++ +++ NRR++I Sbjct: 116 AQFASNWELSVMRAVNFMKVLLENKQLDPRYFSAKGYGEYKPIASNETAAGRMKNRRVEI 175 Query: 337 LVEDR 341 L+ R Sbjct: 176 LILPR 180 >gi|167950042|ref|ZP_02537116.1| flagellar motor protein MotB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 6/138 (4%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 + D + + E I II + F + P V+ KI +V+A + + Sbjct: 1 MLDKEIDEGMLEVETEATKI-IIRIQEKGSFGSGRATLNPGFFDVISKITKVIASTPGKV 59 Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIAS 324 + GHTD P R NW LS DRA + +L G+ R+ + G A + + Sbjct: 60 VVAGHTDDIPISTKRFRSNWELSSDRAVTVVHAMLSNHGLDPSRV-SVEGHADSSPLVPN 118 Query: 325 D--PMNSANRRIDILVED 340 D + NRR+++++E Sbjct: 119 DSWANRAKNRRVELIIER 136 >gi|28211321|ref|NP_782265.1| chemotaxis motB protein [Clostridium tetani E88] gi|28203761|gb|AAO36202.1| chemotaxis motB protein [Clostridium tetani E88] Length = 252 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 11/178 (6%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +N +P + + + + +L K+ S + N+ + V ++ G+L+ + D Sbjct: 78 KNGDIPLVGETTQMGSATGGKENELYDKVKSAVQ---KSNLQESVKIKSDARGVLLELDD 134 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSL 289 +F+ + + ++ +L KI ++++ + + GHTD P +N NW LS Sbjct: 135 S---ILFEIAQADIKQNSLPILDKINKIISTLPNSVMVEGHTDNVPIKNYKYDSNWELST 191 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE--DRQG 343 RA + + +++ + +G+ + +D S NRR+ I++ DR+G Sbjct: 192 QRAVNVLRYFVETKKQNPQRFTAAGYGEFKPIHPNDTLENRSKNRRVTIVIVSIDREG 249 Score = 40.2 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ N W YAD +T+L+ FF++++ ++ D K I F Sbjct: 8 MSRRKRGKGEGVNGEGWLQTYADTVTLLLTFFVLLYSFSSVDAQKFKQISTAFQSVLSGQ 67 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 + F+ +N + +N + K+ S QK Q Sbjct: 68 NGETVFDFNMKNGDIPLVGETTQMGSATGGKENELYDKVKSAVQKSNLQES 118 >gi|188590401|ref|YP_001920214.1| chemotaxis protein MotB [Clostridium botulinum E3 str. Alaska E43] gi|251779316|ref|ZP_04822236.1| chemotaxis protein MotB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500682|gb|ACD53818.1| chemotaxis protein MotB [Clostridium botulinum E3 str. Alaska E43] gi|243083631|gb|EES49521.1| chemotaxis protein MotB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 247 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 87/210 (41%), Gaps = 9/210 (4%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +S +E K+ + +E ++ + + S + + +++ Sbjct: 40 SSVDAEKLKSISEAFVSVMTGQSSDSFMEFNMYDGKVPVIGGESDVDGVIDAQSLGKENM 99 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K I + + +N+ + G+++ + D +F+ + +P + VL K+ Sbjct: 100 YKDIKNYVE---KNNLSGSMDIIQDERGVILELKDS---VLFESGQADLIPGSKEVLDKV 153 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +++ + + GHTD P N NW LS RA + + +++ ++ +G Sbjct: 154 DTLVSALPNSVIVEGHTDNVPISNYRYASNWELSTQRAVNVVKYFVETKSNDPMKFSAAG 213 Query: 315 FAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + +R + ++ + NRR++IL+ + + Sbjct: 214 YGEYRPIVYNNSEENRAKNRRVNILIINEK 243 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 ++K + D W Y+D +T+L+ FF++++ +++ D + K+I + F ++M Sbjct: 3 RRKKSDDGGGLKGDEWLGTYSDCVTLLLTFFILLYSMSSVDAEKLKSISEAF----VSVM 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T + I D ++ L + + + +NN+ + Sbjct: 59 TGQSSDSFMEFNMYDGKVPVIGGESDVDGVIDAQSLGKENMYKDIKNYVEKNNLSGSMDI 118 Query: 138 QQSEHC 143 Q E Sbjct: 119 IQDERG 124 >gi|292669789|ref|ZP_06603215.1| chemotaxis protein MotB [Selenomonas noxia ATCC 43541] gi|292648586|gb|EFF66558.1| chemotaxis protein MotB [Selenomonas noxia ATCC 43541] Length = 304 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 12/178 (6%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N + + + + +K L + +K+ + ++ V E + G++ Sbjct: 71 PSNSQSDASISGVDNGTGAYLKENADLSEAKEKLEQYIKE---HDLQDQVSTELSEEGLM 127 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I + + +F S+ + ++ I +L+ E ++I GHTD P N Sbjct: 128 IRL---KERALFASGSAQLQGQAEQIVPVIAALLSSLPERVTISGHTDNVPISTAQFPSN 184 Query: 285 WRLSLDRAYSAYQVLMKS--GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS RA S + LM + ++ R S + G++ +R ++D + NRR+++ + Sbjct: 185 WELSSARAVSLMRGLMTAQPTLNPARFSAL-GYSEYRPIASNDTDEGRAQNRRVEVFI 241 >gi|323341391|ref|ZP_08081635.1| flagellar motor protein B [Lactobacillus ruminis ATCC 25644] gi|323091268|gb|EFZ33896.1| flagellar motor protein B [Lactobacillus ruminis ATCC 25644] Length = 267 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 115/312 (36%), Gaps = 70/312 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y+D +T+L+ F+V+ ++ D + A++ F+ NP + Sbjct: 17 WLLPYSDMLTLLLGLFIVVSAMSNVDSNKFNALKNEFSQVM------------SLNPIKN 64 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + + E TK + Q ++ H +NSL++ Sbjct: 65 DSAVDNVIDMGETATKGKGASSASTKKQAAASEQ---------------HVQNSLSK--- 106 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + ++ +++L+++A+K+ + Sbjct: 107 -----------------------------QQARVQERQQLKEVAEKLKQDIQNT---GRA 134 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGH 271 G+ +++ ++ +F+ S+ +L K+ L + + + G+ Sbjct: 135 GNTTVSYESDGVHLNL---DSSILFNSGSADLSDAVKQMLDKLVPDLKQVSSNPVIVAGY 191 Query: 272 TDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328 TD P R+ NW LS RA + + + G + + +A ++ K ++D Sbjct: 192 TDNVPVSKRSNYASNWELSSARAVTVMRYFVSKGAISESNVSVQAYAENKPKASNDTDEG 251 Query: 329 -SANRRIDILVE 339 + NRR++I+++ Sbjct: 252 KAQNRRVEIIIQ 263 >gi|310659033|ref|YP_003936754.1| motility protein b [Clostridium sticklandii DSM 519] gi|308825811|emb|CBH21849.1| motility protein B [Clostridium sticklandii] Length = 216 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 11/156 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +Q+ K + L + + + V G+L+ D +FD S+ PE++ Sbjct: 53 EMQNFQKLEDTIQEYLDKNQLSESVTVLEEEAGLLLRFQDN---ILFDSGSADLKPESLE 109 Query: 251 VLQKIGEVLAHSTEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVS 305 ++ I ++L ISI GHTD P + NW LS+ R+ + + L++ + + Sbjct: 110 IMSYIAQLLNAEDFKDKFISIEGHTDDVPMNSPRYPSNWELSVGRSSNVVRFLVENNNMD 169 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 RIS SG++ + +D + NRR+DIL+ Sbjct: 170 PKRISA-SGYSEYHPVAQNDTAENRAKNRRVDILIL 204 >gi|228974615|ref|ZP_04135181.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981210|ref|ZP_04141510.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|228778410|gb|EEM26677.1| OmpA/MotB domain protein [Bacillus thuringiensis Bt407] gi|228785018|gb|EEM33031.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 234 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNEEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|182418302|ref|ZP_02949597.1| chemotaxis protein MotB [Clostridium butyricum 5521] gi|237666437|ref|ZP_04526422.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377684|gb|EDT75228.1| chemotaxis protein MotB [Clostridium butyricum 5521] gi|237657636|gb|EEP55191.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 244 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 16/210 (7%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++Q+ + + + S K D D+ + P L E + ++ Sbjct: 42 DAQKVQAISQAFSIMSGKSTDSILQYDMYQGSQ-------PVLGGESKIENTIQQSENID 94 Query: 196 AKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 K + + V N + + G+++ + D +F+ + + + +L K Sbjct: 95 KKTMYEDVKEFVDKNQLNTTIDIAQDENGVVLQLRDN---ILFESGKADLIDGSSEILDK 151 Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312 I +++ I I GHTD P +I +DNW LS RA + + + G R S Sbjct: 152 INTLISTLPNSIVIEGHTDNVPISTSIYKDNWDLSTARASNVLRYFTQLKGQDPTRFSA- 210 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340 +G+ +R K+ + D + NRR++IL+ Sbjct: 211 AGYGEYRPKVDNSTDENRAQNRRVNILIVS 240 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-GKN 75 + +K + W Y+D +T+LM FF++++ ++ D +AI Q F+ GK+ Sbjct: 1 MARKKKSSNNELTGDEWLGTYSDCVTLLMTFFVLLYSMSTVDAQKVQAISQAFSIMSGKS 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 + + + + P ++KI+ +I + Sbjct: 61 TDSILQYDMYQGSQPVLGGESKIENTIQQS 90 >gi|126665356|ref|ZP_01736338.1| flagellar motor protein MotB [Marinobacter sp. ELB17] gi|126629984|gb|EBA00600.1| flagellar motor protein MotB [Marinobacter sp. ELB17] Length = 313 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 100/320 (31%), Gaps = 55/320 (17%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 ++ + +W + +AD M++L++FF+++ + D K I + Sbjct: 5 PEEEKPGIPAWVVTFADLMSLLLSFFVLLLSFSEIDAQKFKQIAGELSA----------- 53 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 G + N + Sbjct: 54 -------------------------------AFGVQRDVPAVEVPMGTSIIFDNFSSAPA 82 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + D D + + + K +++L+ L K + Sbjct: 83 EPTVINEIKQTTTDQKPEVDTLRGAVDSAALAEATKAAKAAEQEKIQEQLEQLRKVLEPA 142 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L T+ I I F S+ E +L +I EVLA Sbjct: 143 L---------NDGRIAVTQEQHRIVIR-VEEKGSFPSGSAKLTWEFESLLLEIAEVLASI 192 Query: 263 TEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++I GHTD P + NW LS RA S L+ SG E + G A + Sbjct: 193 PGELTIEGHTDNVPISTDRFYSNWDLSAARAASVANALLASGTVEPDRLAVKGLADTAAR 252 Query: 322 IASD--PMNSANRRIDILVE 339 + +D + NRR++I+++ Sbjct: 253 VDNDSAENRAKNRRVEIIID 272 >gi|228923254|ref|ZP_04086544.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954780|ref|ZP_04116801.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960776|ref|ZP_04122414.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048216|ref|ZP_04193785.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|229111973|ref|ZP_04241517.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|229129795|ref|ZP_04258762.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] gi|229147069|ref|ZP_04275429.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|229152704|ref|ZP_04280891.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|229180776|ref|ZP_04308114.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|229192709|ref|ZP_04319668.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|228590799|gb|EEK48659.1| OmpA/MotB domain protein [Bacillus cereus ATCC 10876] gi|228602754|gb|EEK60237.1| OmpA/MotB domain protein [Bacillus cereus 172560W] gi|228630767|gb|EEK87409.1| OmpA/MotB domain protein [Bacillus cereus m1550] gi|228636457|gb|EEK92927.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST24] gi|228653711|gb|EEL09582.1| OmpA/MotB domain protein [Bacillus cereus BDRD-Cer4] gi|228671537|gb|EEL26837.1| OmpA/MotB domain protein [Bacillus cereus Rock1-15] gi|228723203|gb|EEL74579.1| OmpA/MotB domain protein [Bacillus cereus AH676] gi|228798911|gb|EEM45887.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804900|gb|EEM51498.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836460|gb|EEM81811.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|153005701|ref|YP_001380026.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029274|gb|ABS27042.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 256 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 7/226 (3%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + K + + + L ++ L D + ++ + L+ Sbjct: 23 RNKAAEADQLRARGAELEAALSTTQGELASSRDEASALKAQLDALSASKQQLQSQVADLA 82 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 K K L+ + + + L + V R + + + D +F Sbjct: 83 TSKTKLETVKAELEKKSSEYEKMANALRGEIDAGRVELTELRGKMTVKMKD---KILFSS 139 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ L+ + EVL I + GHTD P NW LS+ RA + + Sbjct: 140 GSATLGRAGKDALRAVAEVLTGVEGKVIRVEGHTDNVPLGRGFATNWDLSVARALAVVRF 199 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 L +SGV R++ +G+ H+ ++D S NRRI+I++ + Sbjct: 200 LQESGVQPSRLAA-AGYGEHQPIASNDTPEGRSQNRRIEIVLAPGE 244 >gi|148380179|ref|YP_001254720.1| chemotaxis MotB protein [Clostridium botulinum A str. ATCC 3502] gi|153932823|ref|YP_001384478.1| chemotaxis MotB protein [Clostridium botulinum A str. ATCC 19397] gi|153937092|ref|YP_001387994.1| chemotaxis MotB protein [Clostridium botulinum A str. Hall] gi|148289663|emb|CAL83767.1| putative chemotaxis MotB protein [Clostridium botulinum A str. ATCC 3502] gi|152928867|gb|ABS34367.1| putative chemotaxis MotB protein [Clostridium botulinum A str. ATCC 19397] gi|152933006|gb|ABS38505.1| putative chemotaxis MotB protein [Clostridium botulinum A str. Hall] Length = 254 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 11/183 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L++ + + +S ++ +++++ K+ + + V Sbjct: 62 LQEGGSGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIK---KNGYSDKVKVGVDAD 118 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 G+ I I D +F+ + L ++ +L +I ++L I + GHTD P N Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175 Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 R NW LS RA + L G+ +++ I + + K + + + NRR++I + Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGIPANKL-SIQAYGEYMPKFDNVTEAGRAKNRRVEISI 234 Query: 339 EDR 341 + Sbjct: 235 VRK 237 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------- 72 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFNVIFKAGSNV 61 Query: 73 -------GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 G ++ A I + E +I +++ I KN K+ + Sbjct: 62 LQEGGSGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLE 121 Query: 126 RLENNIFYLSNSQQSEHCKNSL 147 ++ ++ ++S Sbjct: 122 IDIQDVVLFNSGDAEVLKQSSA 143 >gi|322806477|emb|CBZ04046.1| flagellar motor rotation protein MotB [Clostridium botulinum H04402 065] Length = 254 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 10/156 (6%) Query: 192 LQDLA-KKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++D+ K+I S L + N V G+ I I D +F+ + L ++ Sbjct: 86 IEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLEIDIQD---VVLFNSGDAEVLKQSS 142 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSED 307 +L +I ++L I + GHTD P N R NW LS RA + L G+ + Sbjct: 143 ALLTQISKMLKGLDNNIKVTGHTDNQPISNSKFRSNWDLSAIRAINVMNFLSNIGGIPAN 202 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 ++ I + + K A++ + NRR++I + + Sbjct: 203 KL-SIQAYGEYMPKFDNATEAGRAKNRRVEISIVRK 237 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------- 72 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFNVIFKAGSNV 61 Query: 73 -------GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 G ++ A I + E +I +++ I KN K+ + Sbjct: 62 LQEGGSGGDSVGKAGVSIVPSDSVIEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLE 121 Query: 126 RLENNIFYLSNSQQSEHCKNSL 147 ++ ++ ++S Sbjct: 122 IDIQDVVLFNSGDAEVLKQSSA 143 >gi|91229460|ref|ZP_01262927.1| flagellar motor protein [Vibrio alginolyticus 12G01] gi|91187396|gb|EAS73750.1| flagellar motor protein [Vibrio alginolyticus 12G01] Length = 186 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + ++ E G I I R F + S+ P+ ++++I E++ ++ + Sbjct: 40 EREIEQGAIEVENLGQQIVIR-MREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRV 98 Query: 269 RGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS-- 324 GHTD P + R NW LS RA S Q + K G S R+ ++ G A + + Sbjct: 99 SGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRL-RVRGMADTEPLLPNDS 157 Query: 325 DPMNSANRRIDILVEDRQ 342 D + NRR++I + + Sbjct: 158 DDNRALNRRVEISIMQGE 175 >gi|168179911|ref|ZP_02614575.1| chemotaxis MotB protein [Clostridium botulinum NCTC 2916] gi|182669337|gb|EDT81313.1| chemotaxis MotB protein [Clostridium botulinum NCTC 2916] Length = 254 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 10/156 (6%) Query: 192 LQDLA-KKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++D+ K+I S L + N V G+ I I D +F+ + L ++ Sbjct: 86 IEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLEIDIQD---VVLFNSGDAEVLKQSS 142 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSED 307 +L +I ++L I + GHTD P N R NW LS RA + L G+ + Sbjct: 143 ALLTQISKMLKGLDNNIKVTGHTDNQPISNSKFRSNWDLSAIRAINVMNFLSNIGGIPAN 202 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 ++ I + + K A++ + NRR++I + + Sbjct: 203 KL-SIQAYGEYMPKFDNATEAGRAKNRRVEISIVRK 237 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF------- 72 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFNVIFKAGSNV 61 Query: 73 -------GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 G ++ A I + E +I +++ I KN K+ + Sbjct: 62 LQEGGSGGASVGKAGVSIVPSDSVIEDIKMKEIKSKLEKEIKKNGYSDKVKVGVDADGLE 121 Query: 126 RLENNIFYLSNSQQSEHCKNSL 147 ++ ++ ++S Sbjct: 122 IDIQDVVLFNSGDAEVLKQSSA 143 >gi|196039232|ref|ZP_03106538.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99] gi|218905736|ref|YP_002453570.1| chemotaxis protein MotB [Bacillus cereus AH820] gi|225866485|ref|YP_002751863.1| chemotaxis protein MotB [Bacillus cereus 03BB102] gi|196029859|gb|EDX68460.1| chemotaxis protein MotB [Bacillus cereus NVH0597-99] gi|218538809|gb|ACK91207.1| chemotaxis protein MotB [Bacillus cereus AH820] gi|225788965|gb|ACO29182.1| chemotaxis protein MotB [Bacillus cereus 03BB102] Length = 262 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F + + Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D++ E+ + + + + + ++ K Q+ + S K Sbjct: 74 DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133 >gi|332298234|ref|YP_004440156.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] gi|332181337|gb|AEE17025.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] Length = 236 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGE 257 + +S D + + G++I++ F S+ ET + ++ + Sbjct: 88 VKRAVSLFAPDVKSNKITLSSDERGLVITLASD---SFFAPGSAALNIEETRATVLRLAQ 144 Query: 258 VLAH---STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 L+ S I GHTD +P + NW LS RA + L GV+E + ++ Sbjct: 145 FLSSKELSGRRFRIEGHTDGTPVASKDFPSNWELSAARAVNVLHYLSDFGVNEAQF-SVA 203 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVED 340 G+A R K ++D + NRR+DI++ D Sbjct: 204 GYADTRPKFSNDTAEGRAYNRRVDIIILD 232 Score = 42.6 bits (98), Expect = 0.098, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGKNLMTAS 80 + +W Y D +T+++ FF++++ D A+ +P A+ Sbjct: 3 RKEPEKPSTAWMGTYGDMITLMLCFFVMLYNPTEVDAVQMAALTASLQGDPTAGGQSLAA 62 Query: 81 KGIFDEQNP----PERSSQNKIDLSIDEHITKNSVDLK 114 + D N P + LS+ ++ + D+K Sbjct: 63 GRLADLGNTINSLPSLEKGKSLGLSVKRAVSLFAPDVK 100 >gi|153940806|ref|YP_001391525.1| chemotaxis MotB protein [Clostridium botulinum F str. Langeland] gi|152936702|gb|ABS42200.1| chemotaxis MotB protein [Clostridium botulinum F str. Langeland] gi|295319551|gb|ADF99928.1| chemotaxis MotB protein [Clostridium botulinum F str. 230613] Length = 254 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 11/183 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L++ + + +S ++ +++++ K+ + + V Sbjct: 62 LQEGGSGGASVGKAGISIVPSDSVTEDIKMKEIKSKLEKEIE---KNGYSDKVKVGVDAD 118 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 G+ I I D +F+ + L ++ +L +I ++L I + GHTD P N Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175 Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R NW LS RA + L G+ +++ I + + K + + NRR++I + Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGIPANKL-SIQAYGEYMPKFDNATEAGKAKNRRVEISI 234 Query: 339 EDR 341 + Sbjct: 235 VRK 237 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 4/107 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN + A Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----VIFKA 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + E S + + +K + +K+ ++ Sbjct: 58 GSNVLQEGGSGGASVGKAGISIVPSDSVTEDIKMKEIKSKLEKEIEK 104 >gi|119714995|ref|YP_921960.1| OmpA/MotB domain-containing protein [Nocardioides sp. JS614] gi|119535656|gb|ABL80273.1| OmpA/MotB domain protein [Nocardioides sp. JS614] Length = 302 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 119/329 (36%), Gaps = 61/329 (18%) Query: 18 KKKVAIDDTPNN--LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 +++ + P + W + YAD +T+LM F+VM+ ++ D+ +N Sbjct: 6 RRRKKPPEEPEHDNHERWLVTYADMLTLLMVLFIVMFAMSQVDEAK-------YNALKSG 58 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 L F ++ S + ++ Sbjct: 59 LAEG----FGAESSIMTGSTSVLE------------------------------------ 78 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +E + ++ + + + + ++ EE L + A KRL+ + Sbjct: 79 -DNLAETGPDYVSSQAFQAMPADQQQLVRAAVTAEERRRL---QAQYAEAAAEAKRLEAV 134 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K++ L A + K V G+++S++ + +F+ + V+ + Sbjct: 135 RKQLMKALR---AAGLAKDVQATIDDRGLVVSLVSR--HVVFEPDIAQLSARGERVVDTL 189 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + I GHT+ P + +W LS RA + + L + G + +S Sbjct: 190 SRVLRDVPNALRIDGHTNQEPVKPRFFATDWDLSAARAVTVLRRLNEHGDVPKKRLSLSA 249 Query: 315 FAHHRLKI-ASDPMNSA-NRRIDILVEDR 341 F + R + + P + N+R+DI+V + Sbjct: 250 FGNERPLVDPATPGSQEINKRVDIVVLPQ 278 >gi|228903029|ref|ZP_04067168.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] gi|228967605|ref|ZP_04128628.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228792096|gb|EEM39675.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228856622|gb|EEN01143.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 4222] Length = 234 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEARAKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|304438419|ref|ZP_07398359.1| flagellar motor protein MotB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368502|gb|EFM22187.1| flagellar motor protein MotB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 306 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 12/183 (6%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + + S + MK L + K+ + +N+ V E Sbjct: 67 SGMGPSTSMSSATVTTGADTADAAYMKENNDLSEAKAKLDQYIQE---NNLQDQVSTELN 123 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 G++I + + +F S+ + ++ I VL+ E ++I GHTD P Sbjct: 124 EEGLMIRL---KERALFASGSAALQGDAERIVPVIAGVLSSLPERVTISGHTDNVPIATA 180 Query: 281 AR-DNWRLSLDRAYSAYQ--VLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 NW LS RA S + + ++ ++ R S + G++ +R ++D + NRR++ Sbjct: 181 QYPSNWELSSARAVSLMRGVMAVQPSLNPARFSAL-GYSEYRPIASNDTEEGRAQNRRVE 239 Query: 336 ILV 338 + + Sbjct: 240 VFI 242 Score = 42.9 bits (99), Expect = 0.068, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK A +W + Y+D MT+L+A F+ ++ ++ TD +A+ Q F Sbjct: 3 RKKHAKPHEEEAGEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 F P S + D + S + K Q ++ N S Sbjct: 60 MGGPSFFSGMGPSTSMSSATVTTGADTADAAYMKENNDLSEAKAKLDQYIQENNLQDQVS 119 >gi|261403961|ref|YP_003240202.1| OmpA/MotB domain-containing protein [Paenibacillus sp. Y412MC10] gi|329930219|ref|ZP_08283832.1| chemotaxis protein MotB [Paenibacillus sp. HGF5] gi|261280424|gb|ACX62395.1| OmpA/MotB domain protein [Paenibacillus sp. Y412MC10] gi|328935241|gb|EGG31722.1| chemotaxis protein MotB [Paenibacillus sp. HGF5] Length = 268 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 11/193 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVK 213 K T + +K +P + ++ A ++ +DL +K+ L + +N + Sbjct: 69 KTEPSDTPPNINDHKATTPSVPATTPDQRRAELMRQEQEDL-EKLKKQLDNYIKNNGLTS 127 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 + + + ++I+I D +F ++ PE + + I ++L I + GHT Sbjct: 128 ELSTKLNHSQLVITIRDN---ALFPSGEAVVKPEARKLAKAISQMLHKFPDYEIIVSGHT 184 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MN 328 D P N NW LS DRA ++L+ S + R I G+ + ++ Sbjct: 185 DNVPISNSKYPSNWDLSSDRALQFMKILLTNSELDPKRFMPI-GYGEYHPIADNNTAVGR 243 Query: 329 SANRRIDILVEDR 341 + NRR+++ + + Sbjct: 244 AKNRRVEVSIIRK 256 >gi|170759482|ref|YP_001787603.1| chemotaxis MotB protein [Clostridium botulinum A3 str. Loch Maree] gi|169406471|gb|ACA54882.1| putative chemotaxis MotB protein [Clostridium botulinum A3 str. Loch Maree] Length = 254 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 11/183 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L++ + + +S ++ +++++ K+ + V Sbjct: 62 LQEGGSGGASVGKSGVSIVPSDSVTEDIKMKEIKSKLEKEIE---KSGYFDKVKVGVDAD 118 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 G+ I I D +F+ + L ++ +L +I ++L I + GHTD P N Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175 Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 R NW LS RA + L G+ +++ I + + K A++ + NRR++I + Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGIPANKL-SIQAYGEYMPKFDNATEAGRAKNRRVEISI 234 Query: 339 EDR 341 + Sbjct: 235 VRK 237 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 4/108 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN + A Sbjct: 2 KKRESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----IIFKA 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 + E S + + +K + +K+ ++ Sbjct: 58 GSNVLQEGGSGGASVGKSGVSIVPSDSVTEDIKMKEIKSKLEKEIEKS 105 >gi|52140989|ref|YP_085838.1| flagellar motor protein MotB [Bacillus cereus E33L] gi|51974458|gb|AAU16008.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus E33L] Length = 262 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANSQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F + + Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D++ E+ + + + + + ++ K Q+ + S K Sbjct: 74 DQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133 >gi|229013711|ref|ZP_04170840.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048] gi|228747633|gb|EEL97507.1| OmpA/MotB domain protein [Bacillus mycoides DSM 2048] Length = 234 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S N E ++++ K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNEEKELSANSLEAEQAKKQAEDRAKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMLTILEN---VLFDSGKADVKLESLGIAKEMSNLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S + G+ +R + Sbjct: 152 TVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-GYGEYRSIAPN 210 Query: 325 DP--MNSANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTPEGKAKNRRVEVFILP 228 >gi|187933571|ref|YP_001885053.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B] gi|187721724|gb|ACD22945.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B] Length = 247 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + + K + + +N+ + G+++ + D +F+ + +P + VL Sbjct: 97 ESMYKDVKDYVE---KNNLSGAMDIVQDERGVILELKDS---VLFESGQADLIPGSKEVL 150 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 K+ +++ + + GHTD P N NW LS RA + + +++ ++ Sbjct: 151 DKVDTLISALPNSVIVEGHTDNVPISNYKYASNWELSTQRAVNVVKYFVETKSNDPMKFS 210 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 +G+ +R + ++ + NRR++IL+ + + Sbjct: 211 AAGYGEYRPIVYNNSEENKAKNRRVNILIINEK 243 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 7/97 (7%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK + D W Y+D +T+L+ FF++++ ++ D ++I Q F ++M Sbjct: 3 RKKKSDDGGGLRGDEWLATYSDCVTLLLTFFILLYSMSTVDAQKVQSISQAF----VSVM 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114 T G + K+ + E T+ +D + Sbjct: 59 TGQSG---DTFLKYNQYDGKVPIIGGESDTEGVIDAE 92 >gi|153832075|ref|ZP_01984742.1| flagellar motor protein [Vibrio harveyi HY01] gi|148871690|gb|EDL70531.1| flagellar motor protein [Vibrio harveyi HY01] Length = 430 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Query: 162 DLEKSINKEENYFLPPLSKEKILA-MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 DL K+ N+ + ++ ++ + +K ++ D+A+++S L+ ++ + V + Sbjct: 253 DLNKASNQTFTNLINLIAPAQVESTVKTDSQVTDIAERVSMYLATEISKGL---VTVDAL 309 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RN 279 + ISI Q +F+ S+ + V+ K+ L + I + GHTD P + Sbjct: 310 PDRVRISIKAQD---LFESGSAEVVEYIQPVISKLARTLEATEGKILVAGHTDDKPIFTS 366 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 NW LSL RA + + L+ + E R+ G R + + D + NRRI+I Sbjct: 367 KYPSNWHLSLARATAMSEQLIANSALEGRVLP-EGLGDARPLVENTSDENRALNRRIEID 425 Query: 338 VE 339 + Sbjct: 426 LM 427 >gi|301056021|ref|YP_003794232.1| motility protein B [Bacillus anthracis CI] gi|300378190|gb|ADK07094.1| motility protein B [Bacillus cereus biovar anthracis str. CI] Length = 262 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 + + NRR+++ + Sbjct: 239 NTQEGKAKNRRVEVFILP 256 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F + + Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D++ E+ + + + + + ++ K Q+ + S K Sbjct: 74 DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133 >gi|312116065|ref|YP_004013661.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311221194|gb|ADP72562.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 339 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 34/323 (10%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN--PPERSSQNKI 98 +T LM F+V A D + L + D + ++ + + Sbjct: 29 VTFLMVLFMVAQYFAAQD-------ASGKDTALAKLQRQIAQMADLLSLERSQKKTAMEE 81 Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 + E + +S + K ++ + + +Q E + ++ Sbjct: 82 TSGLRETLAASSAENKRLTSLLSVDSAKSGDARVAAVTTQLDEQKSITAQALAQVELLNQ 141 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--------- 209 + L K + EN ++K + ++ DL ++++ L+ V + Sbjct: 142 QILALRKQLAALENSLGDSDKRDKQA----QAQISDLGQRLNVALAKRVQELSQYRSTFF 197 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--- 266 +K L + ++ ++ FD S+ P L K+G L I Sbjct: 198 GELKKSLGDRDDIQVVGDRFVFQSEIFFDSGSADLSPLGYAELDKLGTALRDLENKIPRD 257 Query: 267 -----SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I GHTD P A R NW LS RA S + L+ GV +R+ +GF ++ Sbjct: 258 INWVLRIDGHTDVRPIATAAFRSNWELSSQRAISVVKYLVSKGVPPNRLVA-AGFGEYQP 316 Query: 321 KIA--SDPMNSANRRIDILVEDR 341 + +D NRRI++ + ++ Sbjct: 317 LTSGYTDADLRRNRRIELKLTEK 339 >gi|86751586|ref|YP_488082.1| hypothetical protein RPB_4488 [Rhodopseudomonas palustris HaA2] gi|86574614|gb|ABD09171.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 341 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 113/324 (34%), Gaps = 23/324 (7%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 F+ L L + + + + + Q K L + I + K+D Sbjct: 19 FVDALSTLILGIVFLLSVFLVVQFFLSQEVTGKDKALQELNARIAQLNDLLSLEKLGKLD 78 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + + + ++ K + + E K + + L + Sbjct: 79 IEEQLSQVRAGLSAAQSERDRVKGLYDGLAGAGSDAAGRAGELGKALESEKQLSARALAQ 138 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKK---RLQDLAKKISSTLSGLVADNIVKGVL 216 L + I+ + + K+ R+ DL ++++ L+ V + Sbjct: 139 VEVLNQQISALRRQLAALEEALEATERRDKESQGRIADLGQRLNLALAQRVQELSRYRSE 198 Query: 217 FETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 F IL I I+ ++ FD ++ LPE L K+ L Sbjct: 199 FFGRLRAILGDRPDIRIVGDRFVFQSEVFFDTGQALLLPEGRAELDKLAAALTELDKKIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + V+ + GHTD P + + NW LS RA S Q L+ GV R+ +GFA + Sbjct: 259 SEIPWVLRVDGHTDRRPITGVFKSNWELSSARAISVVQYLVSLGVPAQRLVA-AGFAEFQ 317 Query: 320 LKIASDPMNS--ANRRIDILVEDR 341 ++ + NRRI++ + +R Sbjct: 318 PLDTANTDEAYRRNRRIELKLTER 341 >gi|49478673|ref|YP_038563.1| flagellar motor protein MotB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196034432|ref|ZP_03101841.1| chemotaxis protein MotB [Bacillus cereus W] gi|49330229|gb|AAT60875.1| motility protein B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195992974|gb|EDX56933.1| chemotaxis protein MotB [Bacillus cereus W] Length = 262 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 + + NRR+++ + Sbjct: 239 NTQEGKAKNRRVEVFILP 256 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F + + Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D++ E+ + + + + + ++ K Q+ + S K Sbjct: 74 DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133 >gi|226949496|ref|YP_002804587.1| chemotaxis MotB protein [Clostridium botulinum A2 str. Kyoto] gi|226843238|gb|ACO85904.1| chemotaxis MotB protein [Clostridium botulinum A2 str. Kyoto] Length = 254 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 11/183 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L++ + +S ++ +++++ K+ + V Sbjct: 62 LQEGGGGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIE---KSGYSDKVKVGVDAD 118 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 G+ I I D +F+ + L ++ +L++I ++L I + GHTD P N Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLKQISKMLKGLDNNIKVTGHTDNQPISNSKF 175 Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 R NW LS RA + L G+S +++ I + + K A++ + NRR++I + Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGISANKL-SIQAYGEYMPKFNNATEAGRAKNRRVEISI 234 Query: 339 EDR 341 + Sbjct: 235 VRK 237 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 7/153 (4%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN + A Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----IIFKA 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + E S + + +K + +K+ ++ + Sbjct: 58 GSNVLQEGGGGGASVGKAGVSIVPSDSVTEDIKMKEIKSKLEKEIEKSGYSDKVKVGVDA 117 Query: 140 SE---HCKNSLTRDSEKGKDLCKSTDLEKSINK 169 ++ + +S + L +S+ L K I+K Sbjct: 118 DGLEIDIQDVVLFNSGDAEVLKQSSALLKQISK 150 >gi|150019639|ref|YP_001311893.1| OmpA/MotB domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906104|gb|ABR36937.1| OmpA/MotB domain protein [Clostridium beijerinckii NCIMB 8052] Length = 244 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 11/159 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + ++ ++ K I + + V + G+ ISI D +F+ + L Sbjct: 83 AEEDKMTEVKKMIEEEIK---KEGYSDKVKVDLNSEGLAISIQD---VVLFNSGEADVLK 136 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGV 304 + +L KI +L I + G+TD P N R NW LS RA + ++ G+ Sbjct: 137 DVSQLLLKISHMLYGLDNEIKVAGYTDNVPINNGKFRSNWDLSAMRAINVLNYMVSTGGI 196 Query: 305 SEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 ++++I I + H K A++ + NRR++I V + Sbjct: 197 NQEKI-SIQAYGEHMPKASNATEDGRAKNRRVEIFVVRK 234 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W + Y+D +T+L+A F+VM+ + TD +++ + FN + Sbjct: 3 KKKQHHEEHVDEAWLLPYSDMLTLLLALFIVMFAMGQTDKAKFQSMAKEFN----MIFAG 58 Query: 80 SKGIFDEQN 88 G+ + Sbjct: 59 GTGVMHQDG 67 >gi|187778759|ref|ZP_02995232.1| hypothetical protein CLOSPO_02354 [Clostridium sporogenes ATCC 15579] gi|187772384|gb|EDU36186.1| hypothetical protein CLOSPO_02354 [Clostridium sporogenes ATCC 15579] Length = 251 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 7/176 (3%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISII 229 +N +P + + L + + +K++ + ++ V N +K V + G++I + Sbjct: 73 KNGDVPLVGETTKLGRETGSDAKSDSKEVYNEVNKFVDKNNLKSSVEVKEDGRGVIIQLR 132 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288 D +F+ + P++ ++ KI ++A + + GHTD P +N NW LS Sbjct: 133 DN---VLFEIGRADIKPQSKQIMDKINGLIATLPNEVIVEGHTDNVPIKNEVYGSNWELS 189 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + +++ +G+ +R SD + NRR++I++ ++ Sbjct: 190 TARAVNVLRYFVETKKQNPVRFTAAGYGEYRPIAQNNSDVNKAKNRRVNIVIVSKE 245 >gi|170754769|ref|YP_001781838.1| chemotaxis MotB protein [Clostridium botulinum B1 str. Okra] gi|169119981|gb|ACA43817.1| putative chemotaxis MotB protein [Clostridium botulinum B1 str. Okra] Length = 254 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 11/183 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L++ + +S +M +++++ K+ + V Sbjct: 62 LQEGGGGGASVGKAGVSIVPSDSMTEDIKMKEIKSKLEKEIE---KSGYSDKVKVGVDAD 118 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 G+ I I D +F+ + L ++ +L +I ++L I + GHTD P N Sbjct: 119 GLEIDIQD---VVLFNSGDAEVLKQSSALLTQISKMLKGLDNNIKVTGHTDNQPISNSKF 175 Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 R NW LS RA + L G+S +++ I + + K A++ + NRR++I + Sbjct: 176 RSNWDLSAIRAINVMNFLSNIGGISANKL-SIQAYGEYMPKFDNATEAGRAKNRRVEISI 234 Query: 339 EDR 341 + Sbjct: 235 VRK 237 Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN 52 >gi|302338088|ref|YP_003803294.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301635273|gb|ADK80700.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 242 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 I+++ R + L + +S + + V + G++I++ F +S+ Sbjct: 79 IMSLPSTNRGRALDEARRKAISQFEPEIKSQKVRVQQDERGLIITLASD---AFFKPASA 135 Query: 243 IPL-PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298 E+ LQK+ +L I GHTD++P NW LS DRA + Sbjct: 136 EVQIEESRETLQKLSALLRSMPGRKFRIEGHTDSTPTDPTGPWPTNWELSTDRATNVLHY 195 Query: 299 LMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340 L+ GV+E++ +++GFA +++ + NRR+DI++ Sbjct: 196 LVDFGVTENQF-QVAGFADTVPLASESTEEGKAYNRRVDIIILS 238 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 3/145 (2%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG---KNLMTASKG 82 P +W Y D +T+L+ FF++++ + DD I F+ G Sbjct: 12 CPTGSPAWMNTYGDMVTLLLTFFVMLYTTSTPDDSKMNLILAAFSGLGMYTGGQTLQEGK 71 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + + N ++DE K + +QK + Q+ E + S Sbjct: 72 LAELGNMIMSLPSTNRGRALDEARRKAISQFEPEIKSQKVRVQQDERGLIITLASDAFFK 131 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSI 167 ++ + E + L K + L +S+ Sbjct: 132 PASAEVQIEESRETLQKLSALLRSM 156 >gi|319790061|ref|YP_004151694.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] gi|317114563|gb|ADU97053.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] Length = 233 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 M+ ++++++ +I L L G+ E + G I + + +F P Sbjct: 82 KMRSRQKIEEKLHEIRQMLKRL-------GINSEVAKFGTSIRLRINTDK-LFPPGEDRP 133 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 P+ I ++ +I L ++I G+TD +P NW LS RA + ++ ++ G Sbjct: 134 YPQAIPIIMEICRKLKELDLPLTIEGYTDNTPIHTKRFPSNWELSAARATAILRLFIQCG 193 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++S +G + ++ + NRRI+I++ Sbjct: 194 YDPKKLSA-AGCGPYHPIAPNNTPEGRAKNRRIEIVI 229 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKN 75 + +K + +W + D M++L+ FF++++ ++ + +AI+ FG + Sbjct: 1 MARKKKEECKAP--PAWLTSFGDLMSLLLTFFILLYSMSTISLEKFYQAIKGIIEAFGGH 58 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 + + + + +N P + + + I + Sbjct: 59 YVIYEQRVINGKNIPVQMPDMYPKMRSRQKIEEK 92 >gi|319778881|ref|YP_004129794.1| Outer membrane protein ImpK/VasF, OmpA/MotB domain protein [Taylorella equigenitalis MCE9] gi|317108905|gb|ADU91651.1| Outer membrane protein ImpK/VasF, OmpA/MotB domain protein [Taylorella equigenitalis MCE9] Length = 445 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 10/146 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+++ L + +N++ V E+ R S+++ R F+ S+ + V+ ++G Sbjct: 278 KRLAQYLESEIRENLL-TVRDESDR-----SVVELRGDEFFESGSADIKKQFESVVNRLG 331 Query: 257 EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + L + I I GHTD P + I NW LS RA + +++ +RI + G Sbjct: 332 DALDETEGNILITGHTDNRPIKTIRFPSNWDLSQARADAVAKIIESRLTQPNRI-RSEGK 390 Query: 316 AHHRLKIASDP--MNSANRRIDILVE 339 A ++D NRR++I + Sbjct: 391 ADTMPVTSNDTPENRKRNRRVEITLL 416 >gi|118479664|ref|YP_896815.1| flagellar motor protein MotB [Bacillus thuringiensis str. Al Hakam] gi|196044798|ref|ZP_03112032.1| chemotaxis protein MotB [Bacillus cereus 03BB108] gi|118418889|gb|ABK87308.1| chemotaxis protein, MotB [Bacillus thuringiensis str. Al Hakam] gi|196024286|gb|EDX62959.1| chemotaxis protein MotB [Bacillus cereus 03BB108] Length = 262 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 66 TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 123 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 124 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 179 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 180 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 238 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 239 DTQEGKAKNRRVEVFILP 256 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F + + Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGGTGNKEFLS 73 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D++ E+ + + + + + ++ K Q+ + S K Sbjct: 74 DQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINEKQLSSSFQTK 133 >gi|323490130|ref|ZP_08095350.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2] gi|323396178|gb|EGA89004.1| flagellar motor protein MotB [Planococcus donghaensis MPA1U2] Length = 256 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 13/205 (6%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKK 198 +E + L S + E S E + S E++ K ++ L D K Sbjct: 50 AESFNSELQGGSGVLDEQAPVESFETSPTAELSEDPVTGESPEEVFEAKDQEELLDFQNK 109 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + + + TR G+ I I + +F+ S+ L + + +I + Sbjct: 110 IDTYIDE---NGLAPRLQTDMTRKGLKIII---KEGVLFESGSATILKGSEKITDEISNL 163 Query: 259 L-AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRA-YSAYQVLMKSGVSEDRISKISGF 315 L +I I GHTD P NW LS RA +L +S + S +G+ Sbjct: 164 LITDPPRMIFIEGHTDNVPAGTAEYPTNWELSSARAINFMRNLLENDKLSPQKFSA-TGY 222 Query: 316 AHHRLKIASDP--MNSANRRIDILV 338 + ++ ++D + NRR+++L+ Sbjct: 223 SQYQPIASNDTPEGRAENRRVEVLI 247 >gi|163942243|ref|YP_001647127.1| flagellar motor protein MotB [Bacillus weihenstephanensis KBAB4] gi|163864440|gb|ABY45499.1| OmpA/MotB domain protein [Bacillus weihenstephanensis KBAB4] Length = 261 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 85/208 (40%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ ++ + K+ A +K+ + +L Sbjct: 52 KQMAVAFRSELAGGTGNKEFLSDQKPKEEKELSASSLESEKIKKDAEAEVKKQEMNELKA 111 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + T G++++I++ +FD + E++ + +++ Sbjct: 112 VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 168 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + ++ S + G Sbjct: 169 LLVSASPREITVSGHTDNVPISNAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-G 227 Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 228 YGEYRSIAPNDTPEGKAKNRRVEVFILP 255 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F T +K Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 +Q P E + L ++ ++K N+ K Q+ + S Sbjct: 73 SDQKPKEEKELSASSLESEKIKKDAEAEVKKQEMNELKAVQKGIDKYIEEKQLSSS 128 >gi|108758523|ref|YP_629116.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622] gi|108462403|gb|ABF87588.1| putative chemotaxis protein MotB [Myxococcus xanthus DK 1622] Length = 267 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 20/247 (8%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS-----EHCKNSLTRDSEKGKDLC 158 E+ K D K + + + LE I L +++ ++ LT + + + L Sbjct: 32 ENFAKGLNDEKGAREAAEAKVKALEEKIAELEQEREALNTRLGTAESRLTAGAAERRALE 91 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + ++N E L++ K KR ++LA+ + +S + Sbjct: 92 EKNSQLAALNDELARNTKKLAQAKEELEKRSSEYENLAQSLKQEISD-------GKIELS 144 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPF 277 + + + + D +F S+ E L+KI + L I + GHTD P Sbjct: 145 ELKGKMTVQLKD---KILFASGSARVGKEGEEALKKIADALKTVQGKIIRVEGHTDDVPT 201 Query: 278 RNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334 NW LSL RA + + L +GV +G+ ++ A+D S NRRI Sbjct: 202 GGGQFPSNWELSLARAMAVVRSLQNAGVDPT-FLSAAGYGQYQPIAANDSAENRSLNRRI 260 Query: 335 DILVEDR 341 +I++ + Sbjct: 261 EIVLAPK 267 >gi|228917149|ref|ZP_04080707.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929558|ref|ZP_04092577.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935820|ref|ZP_04098632.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948234|ref|ZP_04110518.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093607|ref|ZP_04224708.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] gi|229124075|ref|ZP_04253267.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] gi|228659377|gb|EEL15025.1| OmpA/MotB domain protein [Bacillus cereus 95/8201] gi|228689816|gb|EEL43622.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] gi|228811592|gb|EEM57929.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823877|gb|EEM69697.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830137|gb|EEM75755.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842567|gb|EEM87657.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|16078432|ref|NP_389251.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. 168] gi|221309232|ref|ZP_03591079.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. 168] gi|221313560|ref|ZP_03595365.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318482|ref|ZP_03599776.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. JH642] gi|221322755|ref|ZP_03604049.1| flagellar motor protein MotB [Bacillus subtilis subsp. subtilis str. SMY] gi|321315123|ref|YP_004207410.1| flagellar motor protein MotB [Bacillus subtilis BSn5] gi|127250|sp|P28612|MOTB_BACSU RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|143208|gb|AAA22603.1| motility protein B [Bacillus subtilis] gi|2633739|emb|CAB13241.1| motility protein B; MotB component of the stator flagellum complex [Bacillus subtilis subsp. subtilis str. 168] gi|320021397|gb|ADV96383.1| flagellar motor protein MotB [Bacillus subtilis BSn5] Length = 261 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 8/191 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214 D T E + + KEK K K Q+ + + S + + D ++ Sbjct: 66 DYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKFIKDKKLEHQ 125 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T G+LI+I D FD + E + + ++I +L + I I GHTD Sbjct: 126 LETKMTSEGLLITIKDS---IFFDSGKATIRKEDVPLAKEISNLLVINPPRNIIISGHTD 182 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P +N NW LS+ RA + +L+++ + ++ G+ ++ ++ S Sbjct: 183 NMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGEYKPVASNKTAEGRSK 242 Query: 331 NRRIDILVEDR 341 NRR+++L+ R Sbjct: 243 NRRVEVLILPR 253 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 17 IKKKVAIDDTPNN-LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + +K + SW + YAD +T+L+A F+V++ ++ D + + + FN Sbjct: 1 MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----E 56 Query: 76 LMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + T G+ D + P + + ID E K + +++ + +++ + Sbjct: 57 VFTGGTGVLDYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKF 116 Query: 135 SNSQQSEH 142 ++ EH Sbjct: 117 IKDKKLEH 124 >gi|91978797|ref|YP_571456.1| hypothetical protein RPD_4338 [Rhodopseudomonas palustris BisB5] gi|91685253|gb|ABE41555.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 341 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 111/340 (32%), Gaps = 20/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTV---LMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + D N + + + L++ FLV+ + + K Q N Sbjct: 5 RGRRQDTGFNYWPGFVDALSTLILAIVFLLSVFLVVQFFLSQEVTGKDKALQELNARLAQ 64 Query: 76 LMTASK----GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 L G + + + + K D G+ N N Sbjct: 65 LSDLLSLEKLGKLNLEEQLSQVRAGLSAAQSERDRVKGLYDGLAGAGNDAAGRAGELNKA 124 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + + + LE++++ E + L + Sbjct: 125 LDSEKQLSARALAQVEVLNQQISALRRQLAALEEALDASEKRDKESQGRIADLGQRLNLA 184 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L +++S S ++ +L + I+ ++ FD ++ LPE Sbjct: 185 LAQRVQELSRYRSEFFGR--LRAILGDRPDIRIVGDRFVFQSEVFFDTGQALLLPEGRAE 242 Query: 252 LQKIGEVLAHSTEVI--------SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 L K+ L + I + GHTD P + NW LS RA S Q L+ G Sbjct: 243 LDKLAPALTELDKKIPPEIAWVLRVDGHTDRRPITGAFKSNWELSSARAISVVQYLVSLG 302 Query: 304 VSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 V R+ +GFA + ++ ++ NRRI++ + +R Sbjct: 303 VPAQRLVA-AGFAEFQPLDIANTDDAYKRNRRIELKLTER 341 >gi|206562638|ref|YP_002233401.1| OmpA family protein [Burkholderia cenocepacia J2315] gi|198038678|emb|CAR54638.1| OmpA family protein [Burkholderia cenocepacia J2315] Length = 223 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRN 279 G+ I I +F+ + LP++ VL +I + L AH+T I + GHTD+ P N Sbjct: 104 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSAHATGDILVEGHTDSVPIAN 160 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 NW LS RA S + L + GV+ R++ I G A + +A D + NRR+ I Sbjct: 161 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTI 219 Query: 337 LV 338 V Sbjct: 220 FV 221 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + G W I YAD +T LM FL ++++ A++ + + A Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQLA---KYNALDARYQTLARQAGGA 69 Query: 80 SKGIFDEQNPPERSS 94 + + D Sbjct: 70 ATAVVDTAKSDPAPP 84 >gi|54294667|ref|YP_127082.1| flagellar motor protein MotD [Legionella pneumophila str. Lens] gi|53754499|emb|CAH15983.1| hypothetical protein lpl1744 [Legionella pneumophila str. Lens] Length = 273 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 18/196 (9%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 SE K D K+ +N P +EK + K L +L K +S G N Sbjct: 56 SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKIKGTFKDGLDELNKSLSELEDGDFKLN 113 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +G + I D + +FD S+ PE ++ L K+ E + + + + G Sbjct: 114 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 162 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 +TD P NW LS RA + ++L G++ RI ++G+ + + Sbjct: 163 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 221 Query: 328 NSANRRIDILV-EDRQ 342 S NRR++IL+ ++R+ Sbjct: 222 RSQNRRVNILITKNRK 237 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GK 74 +K K + + W + YADF+T+L AFF+VM+ I++ + K++ + K Sbjct: 7 MKSKQKKTEEHQDNHRWVVSYADFITLLFAFFVVMYAISSVNVSKYKSLSEGMKSAFNQK 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + A++ + ++ PE + + K+ +L+ G +Q Sbjct: 67 DQNKATQSTDNLKDGPEEKKIKGTFKDGLDELNKSLSELEDGDFKLNRQEG 117 >gi|261856274|ref|YP_003263557.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261836743|gb|ACX96510.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 323 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 106/310 (34%), Gaps = 69/310 (22%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + D MT+L+ F+++ D + + + Sbjct: 55 WLLTMVDLMTLLLTMFVLLAAYAYQSKDNTVTMVA-------------------SSGSTQ 95 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 +Q + + G T + + N + + +H K S S Sbjct: 96 QAQKVDKTPTPQTGPMPTTQTSPGETPTQGNIPQAGNALIGKAGETVLDHAKPSAQSSSA 155 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K QD A+ + + L V ++V Sbjct: 156 ND-----------------------------------KASQDQARALFAGLGKDVDVSVV 180 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 KG + + + ++ +F +S + +L+++ + L I+++GHT Sbjct: 181 KGRI------NLRV-----KDNILFSSGNSALSAAGMQLLKRLADRLKAGDYPIAVQGHT 229 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 D P + NW LS RA + Q L+ SGV +R+S I GFA ++D + Sbjct: 230 DNVPIHTLQFPSNWELSAARAAAVVQELIASGVQPNRLSAI-GFADTHPITSNDTASGRA 288 Query: 330 ANRRIDILVE 339 NRR+D+ ++ Sbjct: 289 ENRRVDLELQ 298 >gi|315644424|ref|ZP_07897557.1| OmpA/MotB domain protein [Paenibacillus vortex V453] gi|315280174|gb|EFU43467.1| OmpA/MotB domain protein [Paenibacillus vortex V453] Length = 273 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 11/193 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVK 213 K L + +K + +P + ++ A ++ +DL +K+ L + +N + Sbjct: 69 KTLPSEDPPNVNDHKASSPNVPATTPDQRRAELMRQEQEDL-EKLKKQLDNYIKNNGLTS 127 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 + + + ++I+I D +F ++ PE + + I ++L I + GHT Sbjct: 128 ELSTKLNHSQLVITIRDN---ALFPSGEAVVKPEARKLAKAISQMLHKFPDYEIIVSGHT 184 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMN 328 D P N NW LS DRA ++L+ S + R I G+ + ++ Sbjct: 185 DNVPIANSRYPSNWDLSSDRALQFMKILLTNSALDPKRFMPI-GYGEYHPIADNKTEAGR 243 Query: 329 SANRRIDILVEDR 341 + NRR+++ + + Sbjct: 244 AKNRRVEVSIIRK 256 >gi|229175219|ref|ZP_04302735.1| OmpA/MotB domain protein [Bacillus cereus MM3] gi|228608355|gb|EEK65661.1| OmpA/MotB domain protein [Bacillus cereus MM3] Length = 234 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|302037673|ref|YP_003797995.1| flagellar motor protein MotB [Candidatus Nitrospira defluvii] gi|300605737|emb|CBK42070.1| Flagellar motor protein MotB [Candidatus Nitrospira defluvii] Length = 259 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 6/149 (4%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K+I + +A + + ET I+IS+ + +F + PE + L+ + Sbjct: 93 MKEIMKKIHPSLALEMPDIKIIETGNGTIMISL---PESILFTSGEARVRPEALPFLKSL 149 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 ++L + I GHTD P R NW LS RA ++ + +G Sbjct: 150 AQILIEMDRHVRILGHTDNVPIRTAQFPSNWELSAVRAVMVVRIFSELYEVPISHLSATG 209 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 FA + +D + NRR++I++ ++ Sbjct: 210 FADSKPVATNDTPEGRTKNRRVEIIILEK 238 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 2/153 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + + W + YADF+T+L AFF+VM+ +++ ++ + + + Sbjct: 1 MAKKKHEEHENH--ERWLVSYADFITLLFAFFVVMYSVSSVNEGKYRTVSDSIKAALNPV 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + D+S + + + + + I N Sbjct: 59 NSTPSSRLPFAVGDAKPKMINPDMSSANEPVIRRMKEIMKKIHPSLALEMPDIKIIETGN 118 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 S+ S + + ++ KS+ + Sbjct: 119 GTIMISLPESILFTSGEARVRPEALPFLKSLAQ 151 >gi|307610480|emb|CBX00052.1| hypothetical protein LPW_18071 [Legionella pneumophila 130b] Length = 267 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 SE K D K+ +N P +EK K L +L K +S G N Sbjct: 50 SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 107 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +G + I D + +FD S+ PE ++ L K+ E + + + + G Sbjct: 108 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 156 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 +TD P NW LS RA + ++L G++ RI ++G+ + + Sbjct: 157 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 215 Query: 328 NSANRRIDILV-EDRQ 342 S NRR++IL+ ++R+ Sbjct: 216 RSQNRRVNILITKNRK 231 >gi|254248921|ref|ZP_04942241.1| OmpA/MotB [Burkholderia cenocepacia PC184] gi|124875422|gb|EAY65412.1| OmpA/MotB [Burkholderia cenocepacia PC184] Length = 223 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRN 279 G+ I I +F+ + LP++ VL +I + L AH+T I + GHTD+ P N Sbjct: 104 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIAN 160 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 NW LS RA S + L + GV+ R++ I G A + +A D + NRR+ I Sbjct: 161 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAASRARNRRVTI 219 Query: 337 LV 338 V Sbjct: 220 FV 221 Score = 38.7 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 + + G W I YAD +T LM FL ++++ Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQ 48 >gi|291483903|dbj|BAI84978.1| flagellar motor protein MotB [Bacillus subtilis subsp. natto BEST195] Length = 260 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 8/191 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214 D T E + + KEK K K Q+ + + S + + D ++ Sbjct: 65 DYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKFIKDKKLEHQ 124 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T G+LI+I D FD + E + + ++I +L + I I GHTD Sbjct: 125 LETKMTSEGLLITIKDS---IFFDSGKATIRKEDVPLAKEISNLLVINPPRNIIISGHTD 181 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P +N NW LS+ RA + +L+++ + ++ G+ ++ ++ S Sbjct: 182 NMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGEYKPVASNKTAEGRSK 241 Query: 331 NRRIDILVEDR 341 NRR+++L+ R Sbjct: 242 NRRVEVLILPR 252 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + SW + YAD +T+L+A F+V++ ++ D + + + FN + Sbjct: 1 MARKKKKHEDEQVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----EV 56 Query: 77 MTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 T G+ D + P + + ID E K + +++ + +++ + Sbjct: 57 FTGGTGVLDYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAADQEELENVKSQVEKFI 116 Query: 136 NSQQSEH 142 ++ EH Sbjct: 117 KDKKLEH 123 >gi|260438796|ref|ZP_05792612.1| putative chemotaxis protein MotB [Butyrivibrio crossotus DSM 2876] gi|292808785|gb|EFF67990.1| putative chemotaxis protein MotB [Butyrivibrio crossotus DSM 2876] Length = 265 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 82/331 (24%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + +D P W ++D M +L+ FF++++ ++ D + + + F+ L Sbjct: 3 RKKNEDPPIKTDGWMNTFSDLMNLLLCFFVMLFSMSTIDAEKFQEVIASFSSSYSVLDGG 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S GI + S +T+ S S Sbjct: 63 STGI----------DDGMLIASGASQLTQLSEYY-----------------------SSM 89 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +S + +K +DL +L+ S + + KI Sbjct: 90 GASDDDSDKSEIDKAQDLIGKEELKDS--------------------------EQMGDKI 123 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L + N + + T+ + +++ + +F+ +S+ + VL + +L Sbjct: 124 ENLLDKMGQSN---NIEVQVTQHYVCLNM---KGALLFNSASATLTSDAEKVLSDVAVIL 177 Query: 260 AHS-TEVISIRGHTDASPFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISK 311 +I I GHTD P NW LS RA + + L+ G+S ++ Sbjct: 178 KMYEDNLIEIEGHTDNVPI------NWDIFTSNNVLSDYRALAVFDFLVDKGISPVKLKH 231 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVED 340 SG + ++D + NRR++I + + Sbjct: 232 -SGRGEYNPIASNDTAEGRAQNRRVEIKIYN 261 >gi|52842007|ref|YP_095806.1| flagellar motor protein MotD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629118|gb|AAU27859.1| flagellar motor protein MotB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 273 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 SE K D K+ +N P +EK K L +L K +S G N Sbjct: 56 SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 113 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +G + I D + +FD S+ PE ++ L K+ E + + + + G Sbjct: 114 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 162 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 +TD P NW LS RA + ++L G++ RI ++G+ + + Sbjct: 163 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 221 Query: 328 NSANRRIDILV-EDRQ 342 S NRR++IL+ ++R+ Sbjct: 222 RSQNRRVNILITKNRK 237 >gi|327187188|dbj|BAK08928.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + + E + F P + D+ + + L + + + Sbjct: 61 PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G+++ + + +F+ + + L L+K+G +L+ ++ + GHTD+ P Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177 Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N NW LS RA S + L++ + + R +G+ R + + NRR Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236 Query: 334 IDILVED 340 + I++ D Sbjct: 237 VVIVISD 243 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + ++D MT+++ FF++++ ++ D +AI + F + + Sbjct: 1 MKRRRRQQEKG--ATKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 + +NP E + + + ++ + ++ Sbjct: 57 FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100 >gi|229158119|ref|ZP_04286188.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] gi|228625348|gb|EEK82106.1| OmpA/MotB domain protein [Bacillus cereus ATCC 4342] Length = 234 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLSIAKEMSNLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + + S + G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-GYGEYRAIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|167629589|ref|YP_001680088.1| flagellar motor protein motb, putative [Heliobacterium modesticaldum Ice1] gi|167592329|gb|ABZ84077.1| flagellar motor protein motb, putative [Heliobacterium modesticaldum Ice1] Length = 298 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 11/177 (6%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 E P + ++K + LQ++ ++ + + K V R G+ IS Sbjct: 70 DTEGASDAPPDMSVMESLKETRDLQEIKNRVDRYIEE---KGLEKQVETNLVREGLQISF 126 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRL 287 D +FD + E + L I + L + + + I GHTD P NW L Sbjct: 127 RD---AALFDSGKADLKREALPALDLIADTLHNLSNEVRIAGHTDNLPISTAEFPSNWDL 183 Query: 288 SLDRAYSAY-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 S RA + +L + + + + G+ + K +D + NRR+++++ + Sbjct: 184 SAKRALNVMKYILNDKRNNPVKFTAV-GYGEYHPKATNDTPEGRAQNRRVEVMIIRQ 239 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 36/280 (12%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLM 77 K + +W I YAD +T+L+A F+VM+ ++ D +A+++ G + + Sbjct: 3 KKKQHHEEHIDETWLIPYADMLTLLLALFIVMFAVSQVDTKKFEALKKAMESVFKGGSGI 62 Query: 78 TASKGIFDEQN----PPERSSQNKIDLSIDEHITKNSVDL---KIGSTNQKKQYQRLENN 130 A+ D + PP+ S + + D KN VD + G Q + E Sbjct: 63 MANPTPLDTEGASDAPPDMSVMESLKETRDLQEIKNRVDRYIEEKGLEKQVETNLVREGL 122 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKST-----DLEKSINKEENYFLPPLSKEKILA 185 ++ + K L R++ DL T + + +N + Sbjct: 123 QISFRDAALFDSGKADLKREALPALDLIADTLHNLSNEVRIAGHTDNLPISTAEFPSNWD 182 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVL-----FETTRTG----ILISIIDQRNTPM 236 + K+ L + ++ + V V T G + ++ R PM Sbjct: 183 LSAKRALNVMKYILNDKRNNPVKFTAVGYGEYHPKATNDTPEGRAQNRRVEVMIIRQYPM 242 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + P V+ E ++ +G+ DA P Sbjct: 243 -PGQKATP------------AVVKPVPEPLAPQGNADAMP 269 >gi|148359324|ref|YP_001250531.1| flagellar motor protein MotB [Legionella pneumophila str. Corby] gi|296107371|ref|YP_003619071.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy] gi|148281097|gb|ABQ55185.1| flagellar motor protein MotB [Legionella pneumophila str. Corby] gi|295649272|gb|ADG25119.1| flagellar motor protein [Legionella pneumophila 2300/99 Alcoy] Length = 267 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 SE K D K+ +N P +EK K L +L K +S G N Sbjct: 50 SEGMKSAFNQKDQNKATQSTDNLKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 107 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +G + I D + +FD S+ PE ++ L K+ E + + + + G Sbjct: 108 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 156 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 +TD P NW LS RA + ++L G++ RI ++G+ + + Sbjct: 157 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 215 Query: 328 NSANRRIDILV-EDRQ 342 S NRR++IL+ ++R+ Sbjct: 216 RSQNRRVNILIAKNRK 231 >gi|313895933|ref|ZP_07829487.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430] gi|312975358|gb|EFR40819.1| chemotaxis protein MotB [Selenomonas sp. oral taxon 137 str. F0430] Length = 310 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 9/206 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q++ K + + + P +S K ++L++ Sbjct: 40 SQTDASKMQALAQAFTAAFNMGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSE 99 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + ++ V E + G++I + + +FD S+ + ++ I Sbjct: 100 AQEKLEQYIKEHDLQDQVSTELSEDGLMIRL---KEKALFDSGSAALQGQAEQIVPVIAA 156 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS--GVSEDRISKISG 314 +L E ++I GHTD P NW LS RA S + LM + ++ R S + G Sbjct: 157 LLTSLPERVTISGHTDNVPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-G 215 Query: 315 FAHHRLKIASDPM--NSANRRIDILV 338 ++ +R ++D + NRR+++ + Sbjct: 216 YSEYRPIASNDTEEGRAQNRRVEVFI 241 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK A +W + Y+D MT+L+A F+ ++ ++ TD +A+ Q F Sbjct: 3 RKKHAKPHEEEVGEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 F P + I + + + + + +K + E+++ ++ Sbjct: 60 MGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSEAQEKLEQYIKEHDLQDQVST 119 Query: 138 QQSEHC 143 + SE Sbjct: 120 ELSEDG 125 >gi|134298231|ref|YP_001111727.1| OmpA/MotB domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050931|gb|ABO48902.1| OmpA/MotB domain protein [Desulfotomaculum reducens MI-1] Length = 236 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 12/177 (6%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 E L + + LQ+L K++ + +N+ V + ++I Sbjct: 64 ESKSLSDQLIDKTEVKTDTVVELQELKKQLDQYIKE---NNMTTEVETNIINNHLTLTIR 120 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP-FRNIARDNWRL 287 D +FD S++ P++ +++ +G +L + + + GHTD P + N NW L Sbjct: 121 D---RALFDSGSAVVKPQSRKIIKAMGSILQQYPKFEVLVAGHTDNQPIYNNTFESNWDL 177 Query: 288 SLDRA-YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S RA +L + R+ I G+ +R + + NRR+++++ + Sbjct: 178 SSKRALNCMKIMLTNKNLDPRRLVAI-GYGEYRPIAENTTTEGRAKNRRVEVIINQK 233 Score = 43.3 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + SW I YAD +T+L+A F+V++ + D+ A+++ N + + Sbjct: 3 KHREQHEEHIDESWLIPYADLLTLLLALFIVLFASSTIDNQKFNAMKESLNA----ALNS 58 Query: 80 SKGIFDEQN 88 GI + ++ Sbjct: 59 GAGIMESKS 67 >gi|327438679|dbj|BAK15044.1| flagellar motor protein [Solibacillus silvestris StLB046] Length = 251 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 11/161 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++ ++RLQ+ ++ ++ + + + T G+LI+I D +FD + Sbjct: 87 IEDQERLQETQNRVDEFIA---INELEDQFETKMTDEGLLITIRDS---ILFDMGRADVK 140 Query: 246 PETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG 303 E + ++ ++L + I GHTD P + NW LS+ RA + + ++ Sbjct: 141 AEYDTIADELAQLLMFDPPRNVVITGHTDNVPIKTPEFDSNWDLSVMRAVNFMKEIVSGN 200 Query: 304 VS-EDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + + GF + +D + NRR+++LV+ R Sbjct: 201 EQLDSKYFSVKGFGEFQPIATNDTQEGRAKNRRVEVLVQPR 241 >gi|327187191|dbj|BAK08930.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + + E + F P + D+ + + L + + + Sbjct: 61 PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G+++ + + +F+ + + L L+K+G +L+ ++ + GHTD+ P Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177 Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N NW LS RA S + L++ + + R +G+ R + + NRR Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236 Query: 334 IDILVED 340 + I++ D Sbjct: 237 VVIVISD 243 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + ++D MT+++ FF++++ ++ D +AI + F + + Sbjct: 1 MKRRRRQQEKG--ASKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 + +NP E + + + ++ + ++ Sbjct: 57 FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100 >gi|288553786|ref|YP_003425721.1| flagellar motor protein MotS [Bacillus pseudofirmus OF4] gi|34485061|gb|AAB94398.2| channel protein [Bacillus pseudofirmus OF4] gi|288544946|gb|ADC48829.1| Flagellar motor rotation protein motS [Bacillus pseudofirmus OF4] gi|327187185|dbj|BAK08926.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + + E + F P + D+ + + L + + + Sbjct: 61 PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G+++ + + +F+ + + L L+K+G +L+ ++ + GHTD+ P Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177 Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N NW LS RA S + L++ + + R +G+ R + + NRR Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236 Query: 334 IDILVED 340 + I++ D Sbjct: 237 VVIVISD 243 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + ++D MT+++ FF++++ ++ D +AI + F + + Sbjct: 1 MKRRRRQQEKG--APKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 + +NP E + + + ++ + ++ Sbjct: 57 FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100 >gi|228987761|ref|ZP_04147872.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772035|gb|EEM20490.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 234 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEAEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLSIAKEMSNLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + + S + G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-GYGEYRAIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|325271956|ref|ZP_08138407.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51] gi|324102904|gb|EGC00300.1| flagellar motor protein MotD [Pseudomonas sp. TJI-51] Length = 285 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 10/194 (5%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 K + + ++ E E LA L+ ++ + L+ Sbjct: 57 NDPERSMKPIPVGEEKPLTVRPAEPLVNDSEQTEAGLAATNTDPLKTISDDVRDAFGDLI 116 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 N + I I + ++ +F ++P + +++K+ ++L + Sbjct: 117 KSN-----QMTVRGNELWIEI-ELNSSLLFGSGDAMPSDKAFAIIEKVADILKPFANPVH 170 Query: 268 IRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + G TD P R NW LS RA S ++L GV+ R++ + G+ ++ ++D Sbjct: 171 VEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDT 229 Query: 327 --MNSANRRIDILV 338 + NRR+ +++ Sbjct: 230 ADGRARNRRVVLVI 243 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 21/203 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I Q Sbjct: 1 MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQA-------- 51 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + N PERS I + ++ +T + + + Q + N + Sbjct: 52 ------LLGVFNDPERS-MKPIPVGEEKPLTVRPAEPLVNDSEQTEAGLAATNTDPLKTI 104 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S L + ++ E I E N L S + + + K ++ +A Sbjct: 105 SDDVRDAFGDLIKSNQ-----MTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVA 159 Query: 197 KKISSTLSGLVADNIVKGVLFET 219 + + + + + T Sbjct: 160 DILKPFANPVHVEGFTDNLPIRT 182 >gi|320529440|ref|ZP_08030528.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399] gi|320138406|gb|EFW30300.1| putative flagellar motor protein MotB [Selenomonas artemidis F0399] Length = 310 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 9/206 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q++ K + + + P +S K ++L++ Sbjct: 40 SQTDASKMQALAQAFTAAFNMGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSE 99 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + ++ V E + G++I + + +FD S+ + ++ I Sbjct: 100 AQEKLEQYIKEHDLQDQVSTELSEDGLMIRL---KEKALFDSGSAALQGQAEQIVPVIAA 156 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS--GVSEDRISKISG 314 +L E ++I GHTD P NW LS RA S + LM + ++ R S + G Sbjct: 157 LLTSLPERVTISGHTDNVPIATSQFPSNWELSSARAVSLMRGLMGAQPSLNPARFSAL-G 215 Query: 315 FAHHRLKIASDPM--NSANRRIDILV 338 ++ +R ++D + NRR+++ + Sbjct: 216 YSEYRPIASNDTEEGRAQNRRVEVFI 241 Score = 42.9 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK A +W + Y+D MT+L+A F+ ++ ++ TD +A+ Q F Sbjct: 3 RKKHAKPHEEEAGEAWLLPYSDLMTLLLALFIALFAMSQTDASKMQALAQAFTA---AFN 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 F P + I + + + + + +K + E+++ ++ Sbjct: 60 MGGPSFFSGMGPSTSQTAPSISGNDNGNGAYMKENENLSEAQEKLEQYIKEHDLQDQVST 119 Query: 138 QQSEHC 143 + SE Sbjct: 120 ELSEDG 125 >gi|331269325|ref|YP_004395817.1| chemotaxis motB protein [Clostridium botulinum BKT015925] gi|329125875|gb|AEB75820.1| chemotaxis motB protein [Clostridium botulinum BKT015925] Length = 242 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 11/195 (5%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + S + + ++ ++ N +P + + + K + + K+ + Sbjct: 47 NKISSSLQSVLSGSNSNSILDFNSNGEVPIVGPPQEMGPKSGGGNEAMYGKVKEFMDKNK 106 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 DN V+ + GI+I + D +FD + + + +L KI +L I Sbjct: 107 LDNTVQ---VKRDARGIIIELKDN---ILFDSAQAEIKAPSKEILDKISRLLESVPNGII 160 Query: 268 IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325 I GHTD P N NW LS RA + + ++S G++ D+ + +G+ +D Sbjct: 161 IEGHTDNVPIHNTKYESNWELSTQRAVNVLKYFVESKGLAPDKF-QAAGYGEFHPIEKND 219 Query: 326 --PMNSANRRIDILV 338 + NRR++IL+ Sbjct: 220 NYADRAKNRRVNILI 234 >gi|229163499|ref|ZP_04291450.1| OmpA/MotB domain protein [Bacillus cereus R309803] gi|228620068|gb|EEK76943.1| OmpA/MotB domain protein [Bacillus cereus R309803] Length = 233 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 84/208 (40%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ + + K+ A +++ + +L Sbjct: 24 KQMAVAFRSELAGGTGNKEFLSDQKPNEEKELSASSLESEKMKKNAEAEVKQQEMNELKA 83 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + + T G+ ++I++ +FD + E++ + +++ Sbjct: 84 VQKGIDKYIEENKLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLNIAKEMSN 140 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + ++ S + G Sbjct: 141 LLVSTSPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAV-G 199 Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 200 YGEYRSIAPNDTQEGKAKNRRVEVFILP 227 >gi|115522688|ref|YP_779599.1| hypothetical protein RPE_0661 [Rhodopseudomonas palustris BisA53] gi|115516635|gb|ABJ04619.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 341 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 105/312 (33%), Gaps = 16/312 (5%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQ---YFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 +L F +V + ++ KA+++ L G ++ + Sbjct: 33 LLSVFLVVQFFLSQEVTGKDKALQELNAKLAQLNDMLSLEKLGKIGLEDQLGQLRAGLAS 92 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + + D G+ N N + + + + Sbjct: 93 AETERKRVQGLYDGLAGAGNDAAGRANELNKALDSERQISTRALAQIEVLNQQIAALRRQ 152 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 LE++++ E K L + L +++S S ++ +L Sbjct: 153 LAALEEALDVSEKRGKESQGKIADLGQRLNVALAQRVQELSRYRSEFFGR--LRAILGNR 210 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVI----SIRGH 271 + I+ ++ FD ++ LPE L K+ VL + I + GH Sbjct: 211 SEIRIVGDRFVFQSEVFFDTGQAVLLPEGRAELDKLASVLIDLGKQIPDEITWVLRVDGH 270 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329 TD P + NW LS RA S Q L+ GV R+ +GFA + + + Sbjct: 271 TDVRPITGAFKSNWELSSARAISVVQYLVTLGVPAQRLVA-AGFAEFQPLDVAATEEAYR 329 Query: 330 ANRRIDILVEDR 341 NRRI++ + +R Sbjct: 330 RNRRIELKLTER 341 >gi|310639572|ref|YP_003944330.1| ompa/motb domain-containing protein [Paenibacillus polymyxa SC2] gi|309244522|gb|ADO54089.1| OmpA/MotB domain-containing protein [Paenibacillus polymyxa SC2] Length = 275 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 ++ S S + D +S D+ K+ + + Sbjct: 37 GMSSLDAKKFETMAQSLSSAFSGGTGVLDHSAANPSSQSMDMGKNKEEVSQPLKSKATST 96 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKS 240 L + +R ++ KK+ + + +N + +L + ++ ++I+I D +F Sbjct: 97 SDLQKQLAQREEEDLKKLKKQMDQYIQNNGLSTLLNTKLNQSQLMITISDN---ALFSSG 153 Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQV 298 + PE + + I +L + + GHTD P N N+ LS R+ + ++ Sbjct: 154 QAEVKPEARKLAKSISSMLQQFPGYDVIVSGHTDNVPISNSQFPSNFDLSAKRSLNFLRI 213 Query: 299 LMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L+ + + + I G+ +R + + NRR++I V + Sbjct: 214 LLLNPQLDPTKFVSI-GYGEYRPLAGNQTGAGRAKNRRVEISVLRK 258 >gi|229186744|ref|ZP_04313902.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] gi|228596757|gb|EEK54419.1| OmpA/MotB domain protein [Bacillus cereus BGSC 6E1] Length = 234 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLETEQAKKQEEAREKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSSLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|325523698|gb|EGD01964.1| OmpA family protein [Burkholderia sp. TJI49] Length = 226 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHT 272 G+ G+ I I +F+ + LPE+ VL +I L AH+T I + GHT Sbjct: 100 GISLVKAPHGVEIGI---DAKILFNVGDARLLPESAPVLDRIALALGAHATGDILVEGHT 156 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNS 329 D P N NW LS RA S + L + GV+ R++ + G A + +A D + Sbjct: 157 DRVPIANAKYESNWELSSARAGSVVRYLAERGVAPHRLAAV-GRADTQPLVAGDDAASRA 215 Query: 330 ANRRIDILV 338 NRR+ I V Sbjct: 216 RNRRVTIFV 224 Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 + D G W I YAD +T LM FL ++++ Sbjct: 17 RDDEDAEGTQAGRWLISYADLVTTLMVLFLALYVLQ 52 >gi|311069471|ref|YP_003974394.1| flagellar motor protein MotS [Bacillus atrophaeus 1942] gi|310869988|gb|ADP33463.1| flagellar motor protein MotS [Bacillus atrophaeus 1942] Length = 209 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 8/191 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ K +SI KE + P + +KK+ + + + + N+ + Sbjct: 19 DVQKFKSAVESIQKEGSGIQPDNTSINTSDAAQKKQDNRQDELLQKVNTYIQKHNLSAKM 78 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + G+++ + + +FD + L + +L +I +L I + GHTD+ Sbjct: 79 TAKRDERGVILVL---QEAVLFDTGEAAVLKDAETLLHQIAVLLQTMPNEIQVEGHTDSR 135 Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SAN 331 NW LS RA Q K + R + G+A + + N Sbjct: 136 NISTYRYPSNWELSAARASGVIQYFTSKENLPSKRFIAV-GYADTMPVKDNKTADHMKEN 194 Query: 332 RRIDILVEDRQ 342 RR++I+++ + Sbjct: 195 RRVEIVIKKSK 205 >gi|269962960|ref|ZP_06177298.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832322|gb|EEZ86443.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 430 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 11/184 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILA-MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 S DL K+ N+ + ++ ++ + ++ ++ D+A++IS L+ ++ + V + Sbjct: 251 SYDLNKASNQSFTNLINLIAPVQVESTVQTDSQVTDIAERISMYLATEISKGL---VTVD 307 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277 + ISI Q +F+ S+ + V+ K+ L + I + GHTD P Sbjct: 308 ALPDRVRISIKAQD---LFESGSAEVVEYIQPVISKLARTLEATEGKILVAGHTDDKPIF 364 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 + NW LSL RA + + L+ + + R+ G R + + D + NRRI+ Sbjct: 365 TSKYPSNWHLSLARATAMSEQLIANSALKGRVLP-EGLGDARPLVDNTSDENRALNRRIE 423 Query: 336 ILVE 339 I + Sbjct: 424 IDLM 427 >gi|325981887|ref|YP_004294289.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531406|gb|ADZ26127.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 264 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 ++ + +++++++ +AK I L LV + V GI + I Sbjct: 83 SNQDSLIKLADNFSTQKARKQEKMKGMAKNILHALEPLVKNG---QVRVTQNSLGITVEI 139 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRL 287 + +F + +I+ LQ I V+ I++ GHTD P NW L Sbjct: 140 ---NASVLFSPGQAKLAENSILSLQAIANVIKGHEHEINVEGHTDNLPINTENFPSNWEL 196 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S RA S ++ ++ GV R++ I G+ +R +++ NRR+ +++ Sbjct: 197 SSARASSVIRLFIEKGVEAHRLTAI-GYGENRPIESNETFEGRKRNRRVTVMIMS 250 >gi|187932715|ref|YP_001887659.1| chemotaxis protein MotB [Clostridium botulinum B str. Eklund 17B] gi|187720868|gb|ACD22089.1| putative chemotaxis MotB protein [Clostridium botulinum B str. Eklund 17B] Length = 244 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 11/178 (6%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 KE S M ++L K+ + N+ V + G++IS Sbjct: 64 KEVGEETNENSIVNDAVMVESEKLDTAKSKVDELIKEY---NLEGRVSTQIQERGLIISF 120 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRL 287 D F+ + E L I ++L I + G+TD NW+L Sbjct: 121 NDN---VFFNSGDATIKSEYKQKLISISKILNDIDNYIRVEGNTDNVAINTENFHSNWQL 177 Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 S RA + ++L+K G ++ D++S I G+ +R ++D +ANRR+DI++ + + Sbjct: 178 SAIRAANVVELLVKEGNINSDKLSAI-GYGEYRPVKSNDTEEGRAANRRVDIVILNNE 234 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 + N W + Y+D +T+LM F+V++ + D + I F Sbjct: 2 KKKRENKENSERWLLTYSDLITLLMVLFVVLYASSNVDKQKYRQISDSFK 51 >gi|322432961|ref|YP_004210210.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321165188|gb|ADW70892.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 239 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGI 224 S + E P+ + + L+ K+S L G++ D I K ++ + T G Sbjct: 55 SAAQTETAPETPVPDQLRGPTQSADPLRFDTAKLSQQLQGVLGDAIDKHEIVMQQTADGF 114 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-D 283 +IS+ R F+ + LP LQ +VL + + GH+D P N Sbjct: 115 IISL---RELGFFNSGEATLLPGAAAKLQDTAKVLMEDGLEVRVEGHSDDQPIHNGQFQS 171 Query: 284 NWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 NW LS RA S +L+ ++G +I ++G+ + + ++ NRR+D++V Sbjct: 172 NWELSTARAMSVLSLLVDEAGFPPTKI-SVAGYGPYHPVADNATLDGRRSNRRVDLVVLS 230 Query: 341 RQ 342 + Sbjct: 231 PR 232 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 19/190 (10%), Positives = 57/190 (30%), Gaps = 11/190 (5%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE-------QYFNPFGKNL 76 + + W I YAD +T+L A F+V++ + + + + Sbjct: 2 GEAGPSHDRWLISYADLVTLLFAVFVVLFAYSWHSKQAIRTVSTAIRSGFDSMSAAQTET 61 Query: 77 MTASKGIFDEQNPPERSSQNKID----LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 + + P + + + D + + +++D Q + Sbjct: 62 APETPVPDQLRGPTQSADPLRFDTAKLSQQLQGVLGDAIDKHEIVMQQTADGFIISLREL 121 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 NS ++ + + + K L + + ++ + + + + + Sbjct: 122 GFFNSGEATLLPGAAAKLQDTAKVLMEDGLEVRVEGHSDDQPIHNGQFQSNWELSTARAM 181 Query: 193 QDLAKKISST 202 L+ + Sbjct: 182 SVLSLLVDEA 191 >gi|107026971|ref|YP_624482.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116691833|ref|YP_837366.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|105896345|gb|ABF79509.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116649833|gb|ABK10473.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 223 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN 279 GI I I +F+ + LP + VL +I + L+ H+T I + GHTD+ P N Sbjct: 104 PHGIEIGI---DAKILFNVGDARLLPHSSPVLNQIAQALSEHATGDILVEGHTDSVPIAN 160 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 NW LS RA S + L + GV+ R++ I G A + +A D + NRR+ I Sbjct: 161 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLVAGDDAGSRARNRRVTI 219 Query: 337 LV 338 V Sbjct: 220 FV 221 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 8/137 (5%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + G W I YAD +T LM FL ++++ + +Y + A Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQLAKYNALD--ARYQTLARQAGGAA 70 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + ++ P +D K++ + + + +F + +++ Sbjct: 71 TASVDAAKSDPAPPWLALLDS------LKSNGRIALVKAPHGIEIGIDAKILFNVGDARL 124 Query: 140 SEHCKNSLTRDSEKGKD 156 H L + ++ + Sbjct: 125 LPHSSPVLNQIAQALSE 141 >gi|327187194|dbj|BAK08932.1| B-subunit of channel/stator unit of Na(+)-driven flagellar motor [Bacillus pseudofirmus] Length = 252 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 8/187 (4%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + + E + F P + D+ + + L + + + Sbjct: 61 PSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVNEMNDVISA 120 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G+++ + + +F+ + + L L+K+G +L+ ++ + GHTD+ P Sbjct: 121 TRDDRGVVLVL---QERTLFETAEAELLDSAEPFLEKVGTLLSAIPNMVKVEGHTDSRPI 177 Query: 278 RNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N NW LS RA S + L++ + + R +G+ R + + NRR Sbjct: 178 SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIA-TGYGDTRPVVPNTTVENLQLNRR 236 Query: 334 IDILVED 340 + I++ D Sbjct: 237 VVIVISD 243 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + ++D MT+++ FF++++ ++ D +AI + F + + Sbjct: 1 MKRRRRQQEKG--APKWMVAFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQ--QRQV 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 + +NP E + + + ++ + ++ Sbjct: 57 FEFFPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDE 100 >gi|83814332|ref|YP_446691.1| chemotaxis protein [Salinibacter ruber DSM 13855] gi|83755726|gb|ABC43839.1| probable chemotaxis protein [Salinibacter ruber DSM 13855] Length = 241 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 13/188 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 +D + + + +P + +KR A++ L L + + Sbjct: 37 RDAISNFQRQPGMFSGSKSVVPADYSSGSSQSRARKR----AEQYEQFLKRLEERGLGEK 92 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + + GI + I D MF + L + VL+++ +L+ + + GHTD Sbjct: 93 IQADLKKEGIHVVIADS---LMFRTGRARLLKPSRTVLRELANLLSRDVGSVVVSGHTDD 149 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIAS--DPMNS 329 P NW LS RA SA + L + R + G A + ++ D + Sbjct: 150 RPIGTRKFPSNWELSTARAASAVRFLQERAPEYDSSRFQAV-GHASTDPRASNQTDEGRA 208 Query: 330 ANRRIDIL 337 NRR++I+ Sbjct: 209 KNRRVEIM 216 Score = 40.6 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 30/95 (31%) Query: 28 NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 W Y D MT+L+ FF+++ ++ + F + + + Sbjct: 2 PTAPFWMTTYGDIMTLLVTFFVLLISMSEIRMKKFRDAISNFQRQPGMFSGSKSVVPADY 61 Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 + S+ + E K + +G Q Sbjct: 62 SSGSSQSRARKRAEQYEQFLKRLEERGLGEKIQAD 96 >gi|294508627|ref|YP_003572686.1| chemotaxis motB protein [Salinibacter ruber M8] gi|294344956|emb|CBH25734.1| Chemotaxis motB protein [Salinibacter ruber M8] Length = 263 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 13/188 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 +D + + + +P + +KR A++ L L + + Sbjct: 59 RDAISNFQRQPGMFSGSKSVVPADYSSGSSQSRARKR----AEQYEQFLKRLEERGLGEK 114 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 + + + GI + I D MF + L + VL+++ +L+ + + GHTD Sbjct: 115 IQADLKKEGIHVVIADS---LMFRTGRARLLKPSRTVLRELANLLSRDVGSVVVSGHTDD 171 Query: 275 SPFRNI-ARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIAS--DPMNS 329 P NW LS RA SA + L + R + G A + ++ D + Sbjct: 172 RPIGTRKFPSNWELSTARAASAVRFLQERAPEYDSSRFQAV-GHASTDPRASNQTDEGRA 230 Query: 330 ANRRIDIL 337 NRR++I+ Sbjct: 231 KNRRVEIM 238 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 31/100 (31%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 D W Y D MT+L+ FF+++ ++ + F + Sbjct: 19 DGDDMPTAPFWMTTYGDIMTLLVTFFVLLISMSEIRMKKFRDAISNFQRQPGMFSGSKSV 78 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 + + + S+ + E K + +G Q Sbjct: 79 VPADYSSGSSQSRARKRAEQYEQFLKRLEERGLGEKIQAD 118 >gi|254973922|ref|ZP_05270394.1| chemotaxis protein [Clostridium difficile QCD-66c26] gi|255091309|ref|ZP_05320787.1| chemotaxis protein [Clostridium difficile CIP 107932] gi|255312966|ref|ZP_05354549.1| chemotaxis protein [Clostridium difficile QCD-76w55] gi|255515725|ref|ZP_05383401.1| chemotaxis protein [Clostridium difficile QCD-97b34] gi|255648819|ref|ZP_05395721.1| chemotaxis protein [Clostridium difficile QCD-37x79] gi|260682038|ref|YP_003213323.1| chemotaxis protein [Clostridium difficile CD196] gi|260685636|ref|YP_003216769.1| chemotaxis protein [Clostridium difficile R20291] gi|306518934|ref|ZP_07405281.1| chemotaxis protein [Clostridium difficile QCD-32g58] gi|260208201|emb|CBA60548.1| chemotaxis protein [Clostridium difficile CD196] gi|260211652|emb|CBE01912.1| chemotaxis protein [Clostridium difficile R20291] Length = 231 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 9/148 (6%) Query: 196 AKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + L V + N+ V + GIL+ + D +FD S ++ L K Sbjct: 85 KSNLEQDLKDKVNNSNLQNSVTVKDDSRGILLELDDS---ILFDSGISELKADSKATLNK 141 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 + +++ I I GHTD P ++ NW LS RA S + ++ G+ R+ Sbjct: 142 VYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDP-RLFSA 200 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILV 338 +G ++ ++++ + NRR++IL+ Sbjct: 201 TGCGEYQPLVSNETAKGRAENRRVNILI 228 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75 + +K N +W YAD +T+++ FF++++ + D + K I F Sbjct: 1 MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDMEKFKNIADALKGQFSGI 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 M ++ E++P E +K D S E K+ V+ Sbjct: 61 SMFSTGSSTSEKSPIESVLVDKNDKSNLEQDLKDKVNN 98 >gi|229135343|ref|ZP_04264134.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] gi|228648118|gb|EEL04162.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST196] Length = 234 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E ++++ K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNEEKELSASSLEAEQAKKQAEDRAKEKKEMDELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -KQLSSSFQTKLTEKGLMLTILEN---VLFDSGKADVKLESLGIAKEMSNLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-GYGEYRSIAPN 210 Query: 325 DP--MNSANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTPEGKAKNRRVEVFILP 228 >gi|221210919|ref|ZP_03583899.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221169875|gb|EEE02342.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 218 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ + ++ L A + GI I I +F + LP+ + VL+ Sbjct: 72 QAPARVPAWVAQLEALKAGGRISLVKAPHGIEIGI---DAGILFHVGDAHLLPDALPVLE 128 Query: 254 KIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +I + L H+T I + GHTD+ P N NW LS RA + + + G++ R++ Sbjct: 129 RIAQALGPHATGDILVEGHTDSVPIANAKYESNWELSSARAGAVVRYFAERGIAPHRLAA 188 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILV 338 + G A + +A D + NRR+ I V Sbjct: 189 V-GRADTQPLVAGDDASSRARNRRVTIFV 216 Score = 36.8 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 G W I YAD +T LM FL ++++ + +A Sbjct: 16 GTQSGRWLISYADLITTLMVLFLALYVLQLAKFNALEA 53 >gi|251777807|ref|ZP_04820727.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082122|gb|EES48012.1| putative chemotaxis MotB protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 244 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 E S M ++L K+ + N+ V + G++IS Sbjct: 65 ETGEETNENSIVNDAVMGESEKLDTAKSKVDELIKEY---NLEGSVSTQIQERGLIISFN 121 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288 D F+ + E L I ++L + I + G+TD NW+LS Sbjct: 122 DN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTDNVAINTENFHSNWQLS 178 Query: 289 LDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 RA + ++L+K G +S D++S I G+ +R ++D +ANRR+DI++ + + Sbjct: 179 AIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRRVDIVILNNE 234 Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ++KK N W + Y+D +T+LM F+V++ + D K I F Sbjct: 1 MRKKRESK---ENSERWLLTYSDLITLLMVLFVVLYASSNVDKQKYKQISNSFK 51 >gi|319647377|ref|ZP_08001599.1| YtxE protein [Bacillus sp. BT1B_CT2] gi|317390724|gb|EFV71529.1| YtxE protein [Bacillus sp. BT1B_CT2] Length = 229 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 11/158 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A K K DL KKI+ + + + + + G+++ + + +FD + Sbjct: 76 AEKTAKSQDDLLKKINDYIE---KNELSSLIAAKRDERGVILVL---QEAVLFDSGKADL 129 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KS 302 + +L KI +L + I + GHTD+ P NW LS RA + K Sbjct: 130 KDQAHPLLHKIAVLLKSVSNPIRVEGHTDSRPISTYRFPSNWELSAARASTVIGYFTSKE 189 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + R I G+A + ++ NRR++I++ Sbjct: 190 KLDSSRFLAI-GYADTKPVRDNRTESHMKENRRVEIVI 226 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74 ++ + + +W I ++D +T+++ FF++++ ++ D + KA F GK Sbjct: 3 LRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGK 62 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 ++ K D++ SQ+ + I+++I KN + I + ++ Sbjct: 63 SVAELKKDAGDQKAEKTAKSQDDLLKKINDYIEKNELSSLIAAKRDERG 111 >gi|167588461|ref|ZP_02380849.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu] Length = 223 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 V G+ I I +F+ + LP+ VL +I VL I + GHT Sbjct: 97 QVTVVNAAHGVEIGI---NAKILFNVGDARLLPDASGVLARIAGVLKAHPATSILVEGHT 153 Query: 273 DASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 D+ P NW LS RA + + L++ GV R++ I G A + +A D + Sbjct: 154 DSVPISTAKYESNWELSSARAGAVVRYLVERGVEPHRLAAI-GRADNLPLVAGDDAAARA 212 Query: 331 -NRRIDILVE 339 NRR+ I V+ Sbjct: 213 KNRRVTIFVQ 222 Score = 39.1 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 G W I YAD +T LM FL ++++ Sbjct: 22 EGAQSGRWLISYADLVTTLMVLFLALYVLQ 51 >gi|54297693|ref|YP_124062.1| flagellar motor protein MotD [Legionella pneumophila str. Paris] gi|53751478|emb|CAH12896.1| hypothetical protein lpp1744 [Legionella pneumophila str. Paris] Length = 273 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 18/196 (9%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 SE K D K+ +N P +EK K L +L K +S G N Sbjct: 56 SEGMKSAFNQKDQNKATQSTDNIKDGP--EEKKTKGTFKDGLDELNKSLSELEDGDFKLN 113 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 +G + I D + +FD S+ PE ++ L K+ E + + + + G Sbjct: 114 RQEG----------WVEI-DIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVVEG 162 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 +TD P NW LS RA + ++L G++ RI ++G+ + + Sbjct: 163 YTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRIL-VTGYGDQYPITDNYTEAG 221 Query: 328 NSANRRIDILV-EDRQ 342 S NRR++IL+ ++R+ Sbjct: 222 RSQNRRVNILITKNRK 237 >gi|167034899|ref|YP_001670130.1| flagellar motor protein MotD [Pseudomonas putida GB-1] gi|166861387|gb|ABY99794.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 285 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 10/182 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + S+ E E LA L+ ++ + L+ N Sbjct: 69 GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN-----QMTV 123 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 + I I + ++ +F ++P + ++ K+ +L + + G TD P R Sbjct: 124 RGNELWIEI-ELNSSLLFGSGDAMPSDKAFAIIDKVANILKPFANPVHVEGFTDNLPIRT 182 Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA S ++L GV+ R++ + G+ ++ ++D + NRR+ + Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDTADGRARNRRVVL 241 Query: 337 LV 338 ++ Sbjct: 242 VI 243 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 5/167 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72 ++++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I Q FN Sbjct: 1 MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDP 59 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 +++ G + K + + +VD ++ + N Sbjct: 60 ERSMKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN 119 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 ++ + L G +D +I + L P + Sbjct: 120 QMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIDKVANILKPFA 166 >gi|296329693|ref|ZP_06872178.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674090|ref|YP_003865762.1| motility protein B; MotB component of the stator flagellum complex [Bacillus subtilis subsp. spizizenii str. W23] gi|296153191|gb|EFG94055.1| flagellar motor protein MotB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412334|gb|ADM37453.1| motility protein B; MotB component of the stator flagellum complex [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG- 214 D T E + + KEK K K Q + + S + + D ++ Sbjct: 66 DYSSVTPPENESDGIDEVEKDKEEKEKNKKEKEKAADQKELENVKSQVEKFIKDKKLEHQ 125 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T G+LI+I D FD + E + + ++I +L + I I GHTD Sbjct: 126 LETKMTSEGLLITIKDS---IFFDSGKATIRKEDVPLAKEISNLLVINPPRNIIISGHTD 182 Query: 274 ASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P +N NW LS+ RA + +L+++ + ++ G+ ++ ++ S Sbjct: 183 NMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGEYKPVASNKTAEGRSK 242 Query: 331 NRRIDILVEDR 341 NRR+++L+ R Sbjct: 243 NRRVEVLILPR 253 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 17 IKKKVAIDDTPNN-LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + +K + SW + YAD +T+L+A F+V++ ++ D + + + FN Sbjct: 1 MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFN----E 56 Query: 76 LMTASKGIFDEQNP-PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + T G+ D + P + + ID + K + +K+ + +++ + Sbjct: 57 VFTGGTGVMDYSSVTPPENESDGIDEVEKDKEEKEKNKKEKEKAADQKELENVKSQVEKF 116 Query: 135 SNSQQSEH 142 ++ EH Sbjct: 117 IKDKKLEH 124 >gi|42783685|ref|NP_980932.1| flagellar motor protein MotB [Bacillus cereus ATCC 10987] gi|42739614|gb|AAS43540.1| sodium-driven polar flagellar protein PomB, putative [Bacillus cereus ATCC 10987] Length = 261 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ + K+ A +++ + +L Sbjct: 52 KQMAVAFRSELAGGTGNKEFLSDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKA 111 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + + T G+ ++I++ +FD + E++ + +++ Sbjct: 112 VQKGIDKYIEENRLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLSIAKEMSN 168 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + + S + G Sbjct: 169 LLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-G 227 Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 228 YGEYRSIAPNDTQEGKAKNRRVEVFILP 255 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F T +K Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 +Q P + + L ++ ++K N+ K Q+ + + S Sbjct: 73 SDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKAVQKGIDKYIEENRLSSS 128 >gi|229090688|ref|ZP_04221921.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] gi|228692630|gb|EEL46356.1| OmpA/MotB domain protein [Bacillus cereus Rock3-42] Length = 126 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 TG+ + I+D +FD + PE ++ ++ I + GHTD+ P Sbjct: 3 VYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRP 59 Query: 277 FRN-IARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANR 332 N NW LS R A + ++ V + R++ + G+A + + +D P N NR Sbjct: 60 IHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAV-GYADTKPVVPNDSPQNWEKNR 118 Query: 333 RIDILVED 340 R+ I +++ Sbjct: 119 RVVIYIKE 126 >gi|253681414|ref|ZP_04862211.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873] gi|253561126|gb|EES90578.1| chemotaxis protein MotB [Clostridium botulinum D str. 1873] Length = 242 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 + + + V + GI+I + D +FD + + + +L KI +L Sbjct: 102 MDKNKLNNTVQVKRDAKGIIIELKDN---ILFDSAQAEIKTPSKEILDKISNLLESVPNG 158 Query: 266 ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA 323 I I GHTD P N NW LS RA + + +++ G++ D+ + +G+ Sbjct: 159 IIIEGHTDNVPIHNAKYASNWELSTQRAVNVLKYFVENKGLAPDKF-QAAGYGEFHPIEK 217 Query: 324 SD--PMNSANRRIDILVEDRQ 342 +D + NRR++IL+ + Sbjct: 218 NDNYANKAKNRRVNILITSGE 238 >gi|222054510|ref|YP_002536872.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221563799|gb|ACM19771.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 287 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 84/189 (44%), Gaps = 11/189 (5%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 ++L + + E + L +++ +Q +K L + ++ V Sbjct: 103 SELRQKVTDLETENARLKDEIANLKKAKEEEVQKTSKTYEDLLEKMKSEISQGQVTISEL 162 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 + + ++++D +FD + PE ++VLQK+ ++L + + I I GHTD Sbjct: 163 KGKLTVNMVD---AVLFDSGKAEIKPEGLIVLQKVIDILKNIKDKSIRIEGHTDNDQIGG 219 Query: 280 I----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + NW LS RA + + L + G+ +S I+ + + A+D + NRR Sbjct: 220 ALAKKYQTNWELSAARAINVTRYLQQQGIDPLNLSAIA-YGEFKPVAANDSREGKAKNRR 278 Query: 334 IDILVEDRQ 342 I+I++ ++ Sbjct: 279 IEIILVPKE 287 >gi|52081472|ref|YP_080263.1| flagellar motor protein MotS [Bacillus licheniformis ATCC 14580] gi|52786848|ref|YP_092677.1| flagellar motor protein MotS [Bacillus licheniformis ATCC 14580] gi|52004683|gb|AAU24625.1| YtxE [Bacillus licheniformis ATCC 14580] gi|52349350|gb|AAU41984.1| YtxE [Bacillus licheniformis ATCC 14580] Length = 229 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 11/158 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A K K DL KKI+ + + + + + G+++ + + +FD + Sbjct: 76 AEKTAKSQDDLLKKINDYIE---KNELSSLIAAKRDERGVILVL---QEAVLFDSGKADL 129 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLM-KS 302 + +L KI +L + I + GHTD+ P NW LS RA + K Sbjct: 130 KDQAHPLLHKIAVLLKSVSNPIRVEGHTDSRPISTYRFPSNWELSAARASTVIGYFTSKE 189 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + R I G+A + ++ NRR++I++ Sbjct: 190 KLDSSRFLAI-GYADTKPVRDNRTESHMKENRRVEIVI 226 Score = 46.8 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74 ++ + + +W I ++D +T+++ FF++++ ++ D + KA F GK Sbjct: 3 LRHERRKREQGRKSPNWIITFSDLITLILVFFILLFSMSQIDLNKFKAAVGSFQDRADGK 62 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 + K D++ SQ+ + I+++I KN + I + ++ Sbjct: 63 SAAELKKDAGDQKAEKTAKSQDDLLKKINDYIEKNELSSLIAAKRDERG 111 >gi|188587883|ref|YP_001922642.1| chemotaxis MotB protein [Clostridium botulinum E3 str. Alaska E43] gi|188498164|gb|ACD51300.1| putative chemotaxis MotB protein [Clostridium botulinum E3 str. Alaska E43] Length = 244 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 E S M ++L K+ + N+ V + G++IS Sbjct: 65 ETGEETNENSIVNDAVMGESEKLDTAKSKVDELIKEY---NLEGSVSTQIQERGLIISFN 121 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288 D F+ + E L I ++L + I + G+TD NW+LS Sbjct: 122 DN---VFFNSGDATIKNEYKQKLISISKILNNIDNYIRVEGNTDNVAINTENFHSNWQLS 178 Query: 289 LDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 RA + ++L+K G +S D++S I G+ +R ++D +ANRR+DI++ + + Sbjct: 179 AIRAANVVELLVKEGNISSDKLSAI-GYGEYRPVKSNDTEDGRAANRRVDIVILNNE 234 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 ++KK N W + Y+D +T+LM F+V++ + D K I F Sbjct: 1 MRKKRESK---ENSERWLLTYSDLITLLMVLFVVLYASSNVDKQKYKQISNSFK 51 >gi|206977733|ref|ZP_03238624.1| chemotaxis protein MotB [Bacillus cereus H3081.97] gi|217961995|ref|YP_002340565.1| flagellar motor protein MotB [Bacillus cereus AH187] gi|222097978|ref|YP_002532035.1| flagellar motor protein motb [Bacillus cereus Q1] gi|206744034|gb|EDZ55450.1| chemotaxis protein MotB [Bacillus cereus H3081.97] gi|217067135|gb|ACJ81385.1| chemotaxis protein MotB [Bacillus cereus AH187] gi|221242036|gb|ACM14746.1| chemotaxis motB protein (Motility protein B) [Bacillus cereus Q1] gi|324328404|gb|ADY23664.1| flagellar motor protein MotB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 261 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ + K+ A +++ + +L Sbjct: 52 KQMAVAFRSELAGGTGNKEFLSDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKA 111 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + + T G+ ++I++ +FD + E++ + +++ Sbjct: 112 VQKGIDKYIEENRLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLSIAKEMSN 168 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + + S + G Sbjct: 169 LLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-G 227 Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 228 YGEYRSIAPNDTQEGKAKNRRVEVFILP 255 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + +W I Y+D +T+L A F+V++ +++ D K + F T +K Sbjct: 14 HEEHIDETWLIPYSDMLTLLFALFIVLFAMSSIDAAKFKQMAVAFRSELAGG-TGNKEFL 72 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 +Q P + + L ++ ++K N+ K Q+ + + S Sbjct: 73 SDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKAVQKGIDKYIEENRLSSS 128 >gi|2853603|gb|AAC08067.1| MotB [Pseudomonas putida] Length = 285 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 10/182 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + S+ E E LA L+ ++ + L+ N Sbjct: 69 GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN-----QMTV 123 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 + I I + ++ +F ++P + ++ K+ +L + + G TD P R Sbjct: 124 RGNELWIEI-ELSSSLLFGSGDAMPSDKAFAIIDKVASILKPFANPVHVEGFTDNLPIRT 182 Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA S ++L GV+ R++ + G+ ++ +D + NRR+ + Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTAEGRARNRRVVL 241 Query: 337 LV 338 ++ Sbjct: 242 VI 243 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 5/167 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72 ++++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I Q FN Sbjct: 1 MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDP 59 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 +++ G + K + + +VD ++ + N Sbjct: 60 ERSMKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSN 119 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 ++ + L+ G +D +I + L P + Sbjct: 120 QMTVRGNELWIEIELSSSLLFGSGDAMPSDKAFAIIDKVASILKPFA 166 >gi|299134154|ref|ZP_07027347.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] gi|298590901|gb|EFI51103.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] Length = 338 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 58/334 (17%), Positives = 118/334 (35%), Gaps = 23/334 (6%) Query: 28 NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 +N G+ + F+ L L + + + + + Q + K L + I Sbjct: 8 HNGGTGLNYWPGFVDALSTLVLAIVFLLSVFLVVQFYLSQEVSGKDKALERLNAQIAQLT 67 Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 N +L ++ I + L + + ++E+ ++ Sbjct: 68 NLLSLEKVTSGNL--NDQIAQLRASLATTEAERDRAKGQIESLSGGAGGGDLNKQLATEK 125 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + ++ ++ L+ + + ++++ DL ++++ L+ V Sbjct: 126 QISERALAQVEVLNQQISALRRQLAALEDALNASEQKGKESQEKIADLGQRLNVALAQRV 185 Query: 208 ADNIVKGVLFETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEV 258 + F IL I I+ ++ FD S+ LPE L ++ Sbjct: 186 QELSRYRSEFFGRLRTILGDRPDIRIVGDRFVFQSEVFFDSGSAALLPEGRNELDQLATA 245 Query: 259 L--------AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L A V+ + GHTD P + + NW LS RA S Q L+ GVS R+ Sbjct: 246 LGDLEKKIPAEIPWVLRVDGHTDVRPINSPQFKSNWDLSAARAISVVQYLISRGVSPQRL 305 Query: 310 SKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 +GF + + NRRI++ + ++ Sbjct: 306 VA-AGFGEFQPLDTGTTEEAYKRNRRIELKLTEK 338 >gi|126697829|ref|YP_001086726.1| chemotaxis protein [Clostridium difficile 630] gi|255099425|ref|ZP_05328402.1| chemotaxis protein [Clostridium difficile QCD-63q42] gi|115249266|emb|CAJ67079.1| Flagellar motor rotation protein MotB (Chemotaxis protein MotB) [Clostridium difficile] Length = 231 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 9/148 (6%) Query: 196 AKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + L V + N+ V + GIL+ + D +FD S ++ L K Sbjct: 85 KSNLEQDLKDKVNNSNLQNSVTVKDDSRGILLELDDS---ILFDSGISELKVDSKATLNK 141 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 + +++ I I GHTD P ++ NW LS RA S + ++ G+ R+ Sbjct: 142 VYDMIKMMKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDP-RLFSA 200 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILV 338 +G ++ ++++ + NRR++IL+ Sbjct: 201 TGCGEYQPLVSNETAKGRAENRRVNILI 228 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75 + +K N +W YAD +T+++ FF++++ + D + K I F Sbjct: 1 MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDMEKFKNIADALKGQFSGT 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 + ++ E++P + +K D S E K+ V+ Sbjct: 61 SIFSTGSSTSEKSPIDSVLVDKNDKSNLEQDLKDKVNN 98 >gi|255305283|ref|ZP_05349455.1| chemotaxis protein [Clostridium difficile ATCC 43255] Length = 231 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +L + + ++ N+ V + GIL+ + D +FD S ++ L Sbjct: 87 NLKQDLKDKVNN---SNLQNSVTVKDDSRGILLELDDS---ILFDSGISELKADSKATLN 140 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311 K+ +++ I I GHTD P ++ NW LS RA S + ++ G+ ++ Sbjct: 141 KVYDMIKMIKNKIVIEGHTDNVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDP-KLFS 199 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILV 338 +G ++ ++++ + NRR++IL+ Sbjct: 200 ATGCGEYQPLVSNETAKGRAENRRVNILI 228 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKN 75 + +K N +W YAD +T+++ FF++++ + D + K I F Sbjct: 1 MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDMEKFKNIANALKGQFSGT 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 M ++ E++P E +K D S + K+ V+ Sbjct: 61 SMFSTGSSTSEKSPIESVLVDKNDKSNLKQDLKDKVNN 98 >gi|300855151|ref|YP_003780135.1| putative flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] gi|300435266|gb|ADK15033.1| predicted flagellar motor protein MotB [Clostridium ljungdahlii DSM 13528] Length = 249 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 9/189 (4%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVL 216 ++ + N F+ K QD +I TL + D V Sbjct: 57 SGEKSIQNNGGSSTNQFIETGESTDKPDESAGKTEQDTMNEIKKTLDAKIKQDGYDDKVK 116 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E ++ G+ ISI + +F+ + L +L I E++ + I I GHTD P Sbjct: 117 VEISKDGLGISI---QEAILFNSGDAEVLTHIHPLLISISEMIRNLDNNIRIAGHTDNVP 173 Query: 277 FRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332 N R NW LS RA + ++K G++ ++ I ++ ++ K + + NR Sbjct: 174 IHNSKFRSNWDLSAMRAINVMNFMVKNGGINITKV-SIQAYSEYQPKSTNLTKEGRAQNR 232 Query: 333 RIDILVEDR 341 R++I + + Sbjct: 233 RVEIFIVRK 241 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 2/152 (1%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLM 77 K + +W I YAD +T+L+A F+VM+ I+ D + I Q FN G+ + Sbjct: 3 KKRQHHEEHVDETWLIPYADMLTLLLALFIVMFAISKVDQEKLAKISQQFNVIFSGEKSI 62 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + G Q S +K D S + ++K + KQ + +S Sbjct: 63 QNNGGSSTNQFIETGESTDKPDESAGKTEQDTMNEIKKTLDAKIKQDGYDDKVKVEISKD 122 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + ++ +S + L L SI++ Sbjct: 123 GLGISIQEAILFNSGDAEVLTHIHPLLISISE 154 >gi|251794146|ref|YP_003008877.1| OmpA/MotB domain protein [Paenibacillus sp. JDR-2] gi|247541772|gb|ACS98790.1| OmpA/MotB domain protein [Paenibacillus sp. JDR-2] Length = 272 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 ++ E S + S + G+ + D K +K+ + Sbjct: 36 YAASSTDARKFERMSEAFSAAFNSGAGIMDNPSVIKSGEQPQQQIDDGKKTSKDRHEDTE 95 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 +E I K ++ L+ L K++ + + + + + ++ ++I+I D + Sbjct: 96 SNLQELI--KKEQEDLEKLKKQLDQYIK---KNGLSSELETKLNQSQLMITISDN---AL 147 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294 F S E+ + I ++L T I + GHTD P R + NW LS RA Sbjct: 148 FASGSDALKTESKELAANISKMLEPYTGYEIVVSGHTDDQPIRTQNFKSNWDLSSSRAIR 207 Query: 295 AY-QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 +L S + +R S I G+ +R ++D + NRR+++ + + Sbjct: 208 FMDVLLQNSKLKPERFSAI-GYGEYRPVASNDTTAGRAKNRRVEVSIIRK 256 >gi|187779120|ref|ZP_02995593.1| hypothetical protein CLOSPO_02715 [Clostridium sporogenes ATCC 15579] gi|187772745|gb|EDU36547.1| hypothetical protein CLOSPO_02715 [Clostridium sporogenes ATCC 15579] Length = 254 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 9/151 (5%) Query: 196 AKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 K+I S L + V G+ I I D +F+ + L ++ +L + Sbjct: 91 MKEIKSNLEKEIKKSGYSDKVKVGVDADGLEIDIQD---VVLFNSGDAEVLKQSSALLTQ 147 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312 I ++L I I GHTD P N R NW LS RA + L G+ +++ I Sbjct: 148 ISKMLKGLDNNIKITGHTDNKPISNSKFRSNWDLSAIRAINVMNFLSNIGGIPANKL-SI 206 Query: 313 SGFAHHRLKIASDPM--NSANRRIDILVEDR 341 + + K + + NRR++I + + Sbjct: 207 QAYGEYMPKFDNATEVGRAKNRRVEIAIVRK 237 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W I Y+D +T+L+A F+VM+ ++ D + Q FN + A Sbjct: 2 KKKESHEDHIDETWLIPYSDMLTLLLALFIVMFAMSKVDTAKLQKASQEFN----IIFKA 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 + E S + + +K +N +K+ ++ Sbjct: 58 GSNVVQEGGGGGASVGKAGVSIVPSDSVTEDIKMKEIKSNLEKEIKKS 105 >gi|229019729|ref|ZP_04176535.1| OmpA/MotB domain protein [Bacillus cereus AH1273] gi|229025955|ref|ZP_04182345.1| OmpA/MotB domain protein [Bacillus cereus AH1272] gi|228735356|gb|EEL85961.1| OmpA/MotB domain protein [Bacillus cereus AH1272] gi|228741574|gb|EEL91768.1| OmpA/MotB domain protein [Bacillus cereus AH1273] Length = 234 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 12/198 (6%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T + E D + + E S + E + + K L+ L KKI ++ Sbjct: 38 TGNKEFLSDQKPNDEKELSASSLEVEQARKQEEARAEEKKEMAELKALQKKIDQYINE-- 95 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVI 266 + + + T G++++I++ +FD + E++ + +++ +L + S I Sbjct: 96 -NQLSSAFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKELSNLLVSASPREI 151 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS 324 ++ GHTD P N NW LS RA + QVL+++ + ++ S I G+ +R + Sbjct: 152 TVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEKFSTI-GYGEYRSIAPN 210 Query: 325 DPMN--SANRRIDILVED 340 D + NRR+++ + Sbjct: 211 DTQEGKAKNRRVEVFILP 228 >gi|121997146|ref|YP_001001933.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1] gi|121588551|gb|ABM61131.1| OmpA/MotB domain protein [Halorhodospira halophila SL1] Length = 246 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 14/215 (6%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 +N Y ++ + + DLE E L Sbjct: 40 DNERYQKLAESLRQVLGPSVVQEDTPQAAPTVVDLEGPAPTPEQEVHDDLPPADPEHTDT 99 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L+ L + ++ L+ V G+L+ F S Sbjct: 100 AEILEALQEALAEELA-------AGDVELGEGEDGVLLRF---PEQAAFALGSKEISEPF 149 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + VL ++ VLA + +I + GHTD P R+ R N+ LS RA S +L +G++ + Sbjct: 150 VPVLDRVAGVLADTPGLIRVSGHTDDIPIRSDRFRSNFELSTARAISVVHILKDAGITPE 209 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R+ G R ++ + NRR+D+ + D Sbjct: 210 RLIA-QGHGETRPLAPNETPEQRARNRRVDVHLVD 243 >gi|154685777|ref|YP_001420938.1| flagellar motor protein MotB [Bacillus amyloliquefaciens FZB42] gi|154351628|gb|ABS73707.1| MotB [Bacillus amyloliquefaciens FZB42] Length = 261 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ L+ + K+++ + + + + T+ G+LI+I D FD + Sbjct: 99 EAADREELEGVQKQVNQFIKN---KKLETQLETKLTKEGLLITIKDS---IFFDSGRADI 152 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 E I + ++I +L + I I GHTD P +N NW LS+ RA + +L ++ Sbjct: 153 RQEDIPLAKEISNLLVLNPPRNIIISGHTDNVPIKNSQYQSNWHLSVMRAVNFMAILTEN 212 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + ++ GF ++ +++ S NRR+++L++ R Sbjct: 213 PKLDAKVFSAKGFGEYKPAVSNKTAEGRSKNRRVEVLIQPRNA 255 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK D + SW I YAD +T+L+A F+V++ +++ D + + + FN Sbjct: 3 RKKKKKHDDEHVDESWLIPYADLLTLLLALFIVLFAMSSVDAAKFQMLSKSFNAV----F 58 Query: 78 TASKGIFDEQN--PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 T G+ + + PPE L D+ K + + ++++ + ++ Sbjct: 59 TGGTGVLEYSSVTPPENEKDGVDQLKKDKEKDKEQKKKEREAADREELEGVQKQVNQFIK 118 Query: 136 NSQQSEHCKNSLTRDS 151 N + + LT++ Sbjct: 119 NKKLETQLETKLTKEG 134 >gi|251772419|gb|EES52986.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum ferrodiazotrophum] Length = 285 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 9/144 (6%) Query: 205 GLVADNIVKGVLFETTR--TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LV + + + GI I I + +F + + I VL+ I +L+ + Sbjct: 92 QLVQEKSSSHGAMKVVQSSEGIRIQI---QAAFLFRTGHAAVRKQAIPVLKNIAALLSKT 148 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK 321 I + GHTD P ++NW LS RA + L+ + + R + +G+ +R Sbjct: 149 KRDIRVEGHTDNVPIHGRYKNNWALSSMRAVNVLTTLIALAPIDPSR-ASAAGYGQYRPL 207 Query: 322 IASD--PMNSANRRIDILVEDRQG 343 + + NRR++I+V + Sbjct: 208 VPNTSAENRQKNRRVEIVVLKEKA 231 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 78/251 (31%), Gaps = 13/251 (5%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMT 78 K + NL W + YADF+T+L FF++M+ I+A + K + F +T Sbjct: 3 KKVKHEEHENLERWLVSYADFITLLFTFFVMMYAISAVNTGKYKVLSNAIVATFTHKTVT 62 Query: 79 ASKGIFDEQNPPERSSQNK----IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 A + N + + + + + S Q + R++ +L Sbjct: 63 AHMHVIIPHNRVTPGKASPKVRTVLFRAMQLVQEKSSSHGAMKVVQSSEGIRIQIQAAFL 122 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK---- 190 + + K ++ L K+ + +N + K + Sbjct: 123 FRTGHAAVRKQAIPVLKNIAALLSKTKRDIRVEGHTDNVPIHGRYKNNWALSSMRAVNVL 182 Query: 191 ----RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 L + +S +V E + + I+ + S P+P Sbjct: 183 TTLIALAPIDPSRASAAGYGQYRPLVPNTSAENRQKNRRVEIVVLKEKAPESLPSPSPVP 242 Query: 247 ETIVVLQKIGE 257 ++ I Sbjct: 243 AVNSPIENIAP 253 >gi|300023960|ref|YP_003756571.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525781|gb|ADJ24250.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 342 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 106/305 (34%), Gaps = 29/305 (9%) Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERS----SQNKIDLSIDEHITKNSVDLKIGSTNQ 120 I QYF+ + ++ Q S + K S DE + + + N+ Sbjct: 39 IAQYFSAEEASGKDSALKRLTRQISELTSMLSLEKGKAQSSQDELAALQATLSSLKTENE 98 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K L + S + + L + DL + LS Sbjct: 99 KLTGVGLGADERAKSAEDKLAGLSSDLQSQKNISDEALSKVDLLNQQLIALRRQIAGLSD 158 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRN------ 233 A K+ K + + L+ +A + + + + G + + D+++ Sbjct: 159 ALDAAEKKGAESDKTIKDLGARLNAALAQQVQELKRYRSDFFGRLRELLKDRKDIRVVGD 218 Query: 234 ------TPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVI----SIRGHTDASPFRN 279 +F S+ PE + + +I E + I I GHTDA P N Sbjct: 219 RFVFESEVLFSSGSASLTPEGMAAMDQIAEAILELQKEIPGDIDWALQINGHTDARPISN 278 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 NW LS RA S + L+ GV DR+ +G+ + AS+ + NRRI++ Sbjct: 279 PQYPSNWELSTARAASVVKYLVLRGVPADRLVA-AGYGEFQPVDASNTEEAYQRNRRIEL 337 Query: 337 LVEDR 341 + R Sbjct: 338 KLTSR 342 >gi|161521534|ref|YP_001584961.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189352297|ref|YP_001947924.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616] gi|160345584|gb|ABX18669.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189336319|dbj|BAG45388.1| chemotaxis MotB protein [Burkholderia multivorans ATCC 17616] Length = 219 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ + ++ L A + GI I I +F + LP+ + VL+ Sbjct: 73 QAPARVPAWVAQLDALKAGGRISLVQAPHGIEIGI---DAGILFHVGDAHLLPDALPVLE 129 Query: 254 KIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +I + L H+ I + GHTD+ P N NW LS RA + + L + G++ R++ Sbjct: 130 RIAQALGPHAAGDILVEGHTDSVPIANAKYESNWELSSARAGAVVRYLAERGIAPHRLAA 189 Query: 312 ISGFAHHRLKIASDPM--NSANRRIDILV 338 + G A + +A D + NRR+ I V Sbjct: 190 V-GRADTQPLVAGDDASSRARNRRVTIFV 217 Score = 38.7 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 + D G W I YAD +T LM FL ++++ Sbjct: 9 RDDEDAEGTQSGRWLISYADLITTLMVLFLALYVLQ 44 >gi|254251112|ref|ZP_04944430.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158] gi|124893721|gb|EAY67601.1| hypothetical protein BDAG_00285 [Burkholderia dolosa AUO158] Length = 431 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 8/168 (4%) Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 + E + ++RL +++ LS L+ D I +GVL SI+ + Sbjct: 267 LTERHALEARILEIGRERLASAPQRLR--LSQLLRDEIARGVLTVDEDE--RRSIVVFKG 322 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292 MF S LP +L K+ +A + + GHTD P R+ A +N LS RA Sbjct: 323 DSMFASGQSTVLPGIEPILDKVAREVARVGGTVLVTGHTDNQPIRSAAFANNLALSEKRA 382 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 Q+L + G +RI + G + A+ + NRR++I+V Sbjct: 383 AYVAQILQRDGTPAERIRAV-GKGDTQPVGDNATAAGRALNRRVEIMV 429 >gi|158320524|ref|YP_001513031.1| OmpA/MotB domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140723|gb|ABW19035.1| OmpA/MotB domain protein [Alkaliphilus oremlandii OhILAs] Length = 254 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 12/167 (7%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L ++ L++ + + S L ++ VL G+++ D +FD + Sbjct: 85 LTAGQRNELENFRELQETLESYLQEYDLETEVLVSQESRGLMLRFQDN---VLFDPGKAE 141 Query: 244 PLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQV 298 P + +LQ I E L + I + GHTD +I NW LS RA + + Sbjct: 142 LKPRSKEILQDIAEFLRSPELKDKDIRVEGHTDTVKVNPTSIYPTNWELSTGRASNVVRY 201 Query: 299 LMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ + +R I+G+ ++ +D S NRR+DI++ + Sbjct: 202 FIEEIDMDPERF-SIAGYGEYQPIAPNDTVENKSKNRRVDIVILRSE 247 >gi|150388139|ref|YP_001318188.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948001|gb|ABR46529.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF] Length = 237 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 6/182 (3%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 T ++ E L L + DL + + + L ++++ V Sbjct: 58 TSEVADLSDENQRLLEEKESLAALLFGLEDIELDLVQSQETFIRFLRENHLLDRVDVIEE 117 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RN 279 G++I D +F + E ++L + L I I G TD P N Sbjct: 118 ERGLVIRFRDS---VLFGSGQARISQEGYMLLDHVTAKLRTIDNAIVIEGFTDNIPIQTN 174 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 NW LS+ RA + ++ E+ +SGF + ++ + + NRRI+I Sbjct: 175 EFPSNWELSVARAIGVARYMIDEEYIEESRISVSGFGEQQPIDSNETNEGRANNRRIEIT 234 Query: 338 VE 339 + Sbjct: 235 IL 236 >gi|91224571|ref|ZP_01259832.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01] gi|91190459|gb|EAS76727.1| hypothetical protein V12G01_07518 [Vibrio alginolyticus 12G01] Length = 430 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFE 218 S +L K+ N+ + + + +++ + +A+KIS L+ + + + E Sbjct: 251 SYELNKASNRTFSQLVNLIQPQQLNQDATSESKSAPIAEKISMYLATEIGKGL---INVE 307 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277 + + IS+ Q +F+ S+ + V+ K+ L + I + GHTD P Sbjct: 308 PLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLARTLESTQGKIIVTGHTDDRPIF 364 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 + NW LSL RA + + L+ + E R+ G R + +SD + NRRI+ Sbjct: 365 TSKYPSNWHLSLARATAMSEQLISNSALEGRVIP-EGLGDARPLVENSSDENRAINRRIE 423 Query: 336 ILVE 339 I + Sbjct: 424 IDLL 427 >gi|90021803|ref|YP_527630.1| Fis family transcriptional regulator [Saccharophagus degradans 2-40] gi|89951403|gb|ABD81418.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 288 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 L+ + +++ LSG++A V + + I I F + P Sbjct: 73 EAEVAPLKQIEQQLEQALSGVLATG---EVTLNGNQNWVEIVI---DANSFFSSGQATPS 126 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304 E VL K+ ++++ +++ GHTD +P N ++NW LS RA + +L +GV Sbjct: 127 DEARTVLNKVADIISPFDNAVAVGGHTDDTPINNAQFKNNWELSSARAVTVVNLLAFAGV 186 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 S +R+S + G+ +R + SANRR+ + V + Sbjct: 187 SPERMSAV-GYGEYRPIADNQTPEGRSANRRVVLRVARDRA 226 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKGIFDEQ 87 N W + YADF+T+L AFF+VM+ ++ ++ + + + N F + +K + Sbjct: 12 NHERWLVSYADFITLLFAFFVVMYSVSQVNETKYRTLSETLGNAFSSSAKKTNKNRSPDT 71 Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 E + +I+ +++ ++ ++ + + + + + S+ Q + Sbjct: 72 TEAEVAPLKQIEQQLEQALSGVLATGEVTLNGNQNWVEIVIDANSFFSSGQATP 125 >gi|269967472|ref|ZP_06181529.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B] gi|269827913|gb|EEZ82190.1| hypothetical protein VMC_29590 [Vibrio alginolyticus 40B] Length = 430 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFE 218 S +L K+ N+ + + + +++ + +A+KIS L+ + + + E Sbjct: 251 SYELNKASNRTFSQLVNLIQPQQLNQDATSESKSAPIAEKISMYLATEIGKGL---INVE 307 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277 + + IS+ Q +F+ S+ + V+ K+ L + I + GHTD P Sbjct: 308 PLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLARTLESTQGKIIVTGHTDDRPIF 364 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 + NW LSL RA + + L+ + E R+ G R + +SD + NRRI+ Sbjct: 365 TSKYPSNWHLSLARATAMSEQLISNSALEGRVIP-EGLGDARPLVENSSDENRAINRRIE 423 Query: 336 ILVE 339 I + Sbjct: 424 IDLL 427 >gi|308066932|ref|YP_003868537.1| chemotaxis motB protein (Motility protein B) [Paenibacillus polymyxa E681] gi|305856211|gb|ADM67999.1| Chemotaxis motB protein (Motility protein B) [Paenibacillus polymyxa E681] Length = 275 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 12/224 (5%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 ++ E LS + + + + + + E+ ++ +K Sbjct: 42 DAKKFETMAQSLSAAFNGGTGVLDHSAANPSSQSMDMGKNKEQVSQPVKSKATSTSELQK 101 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 LA + ++ L+ L K++ + + + + + ++ ++I+I D +F + Sbjct: 102 QLAQREEEDLKKLKKQMDQYIQN---NGLTPLLNTKLNQSQLMITISDN---ALFSSGQA 155 Query: 243 IPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300 PE + + I +L + + GHTD P N N+ LS R+ + ++L+ Sbjct: 156 EVKPEARKLAKSISSMLQQFPGYDVIVSGHTDNVPISNSQFPSNFDLSAKRSLNFLRILL 215 Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + + I G+ +R ++ S NRR++I V + Sbjct: 216 LNPDLDPTKFVSI-GYGEYRPLASNQDGQGRSKNRRVEISVLRK 258 >gi|225382176|gb|ACN89316.1| hypothetical protein VEPGS_0610 [Vibrio alginolyticus] Length = 430 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFE 218 S +L K+ N+ + + + +++ + +A+KIS L+ + + + E Sbjct: 251 SYELNKASNRTFSQLVNLIQPQQLNQDATSESKSAPIAEKISMYLATEIGKGL---INVE 307 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF- 277 + + IS+ Q +F+ S+ + V+ K+ L + I + GHTD P Sbjct: 308 PLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLARTLESTQGKIIVTGHTDDRPIF 364 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 + NW LSL RA + + L+ + E R+ G R + +SD + NRRI+ Sbjct: 365 TSKYPSNWHLSLARATAMSEQLISNSALEGRVIP-EGLGDARPLVENSSDENRAINRRIE 423 Query: 336 ILVE 339 I + Sbjct: 424 IDLL 427 >gi|26991025|ref|NP_746450.1| flagellar motor protein MotD [Pseudomonas putida KT2440] gi|24986055|gb|AAN69914.1|AE016630_5 flagellar motor protein MotB [Pseudomonas putida KT2440] Length = 285 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 10/182 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + S+ E E LA L+ ++ + L+ + Sbjct: 69 GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLINSD-----QMTV 123 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 + I I + ++ +F ++P + +++K+ +L + + G TD P R Sbjct: 124 RGNELWIEI-ELNSSLLFGSGDAMPSDKAFAIIEKVASILKPFANPVHVEGFTDNLPIRT 182 Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA S ++L GV+ R++ + G+ ++ ++D + NRR+ + Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDTAEGRARNRRVVL 241 Query: 337 LV 338 ++ Sbjct: 242 VI 243 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 21/203 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I Q Sbjct: 1 MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQA-------- 51 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + N PERS I + ++ ++ + + + Q + N + Sbjct: 52 ------LLGVFNDPERS-MKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTI 104 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S L D E I E N L S + + + K ++ +A Sbjct: 105 SDDVRDAFGDLIN-----SDQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVA 159 Query: 197 KKISSTLSGLVADNIVKGVLFET 219 + + + + + T Sbjct: 160 SILKPFANPVHVEGFTDNLPIRT 182 >gi|120437856|ref|YP_863542.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117580006|emb|CAL68475.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 320 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 23/314 (7%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 +T ++A ++M + +E + + +K + + + E + L Sbjct: 5 LTSVLALLVLM--SSCVSSKKYGELESKNANLQRENRSVAKELENYRKSSEDLDKELSGL 62 Query: 101 SID-EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 D E IT L T +K Y+ LE + L + + +NS +DL Sbjct: 63 KTDYETITTERNQLMEKLTALEKNYESLEKSYDALEQNSSAAIAENSRQN-----RDLLG 117 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFE 218 D +++ +E L L K+ L R +R+ DL I++ + + A N V L Sbjct: 118 QLDEKEAALLQEKNRLEKLEKDLAL---RSQRINDLENVIAAKDAKMNALKNAVSNALTN 174 Query: 219 TTRTGILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 G+ + D N +FD S E +Q++G VL + ++ + I GH Sbjct: 175 FEGKGLSVEQRDGKVYVSMENKLLFDSGSWAVNSEGRKAVQQLGTVLGQNPDIAVLIEGH 234 Query: 272 TDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328 TD P+ +DNW LS RA + Q+L ++ + + +G + ++D Sbjct: 235 TDNVPYGGSGQLKDNWDLSTKRATAIVQILRENSNIDPQSLTAAGRGEYAPVGSNDTEAG 294 Query: 329 -SANRRIDILVEDR 341 + NRRI++++ + Sbjct: 295 KAKNRRIEVILTPK 308 >gi|87119461|ref|ZP_01075358.1| flagellar motor protein [Marinomonas sp. MED121] gi|86164937|gb|EAQ66205.1| flagellar motor protein [Marinomonas sp. MED121] Length = 281 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 13/234 (5%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 I NQ E + Q S N + K +D E + ++ + Sbjct: 49 YSISLKNQGDSKLLTETLEGVMQAVQLSVQPINIGKVTTGKAED---EAFQELTPDRGSD 105 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 P + + K+ + +Q+L + I + L + + + + I I + + Sbjct: 106 PSPSPQQNIQTVVDKKLQVVQELNQMILTHLGEYQQNGL-----ISINESELWIEI-ELK 159 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291 +F E + VL I EVL + I + GHTD P + NW+LS R Sbjct: 160 AGLLFSSGEFELTNEAVAVLMSISEVLKRYSYPIVVEGHTDNLPVSSNKYTSNWQLSSAR 219 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 A S L+ G++ ++ + G + + K+ ++D + NRR+ + + ++ Sbjct: 220 ASSVVDELVNGGINP-QLIAVLGLSSEKPKVRNSNDFSRARNRRVTLKIGKQEA 272 >gi|229141242|ref|ZP_04269781.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] gi|229198660|ref|ZP_04325361.1| OmpA/MotB domain protein [Bacillus cereus m1293] gi|228584819|gb|EEK42936.1| OmpA/MotB domain protein [Bacillus cereus m1293] gi|228642283|gb|EEK98575.1| OmpA/MotB domain protein [Bacillus cereus BDRD-ST26] Length = 233 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ + K+ A +++ + +L Sbjct: 24 KQMAVAFRSELAGGTGNKEFLSDQKPNDEKELSASSLESEKIKKNAEAEVKQQEMNELKA 83 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + + T G+ ++I++ +FD + E++ + +++ Sbjct: 84 VQKGIDKYIEENRLSSSFKTDLTEKGLKVTILEN---VLFDSGKADVKLESLSIAKEMSN 140 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + + S + G Sbjct: 141 LLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPGKFSAV-G 199 Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 200 YGEYRSIAPNDTQEGKAKNRRVEVFILP 227 >gi|327404103|ref|YP_004344941.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319611|gb|AEA44103.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 293 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 14/275 (5%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 G +++ K I+ P + L + + +Q + + Sbjct: 15 IGIMAVSSCKPIYTCGEPIPEKKKGGKRLQAVVAERDSLCTTLADQKSANEQLTAVNKQL 74 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + Q + +S+ + K DL+ + + I+A R Sbjct: 75 TDDKKNLQIKLSGQENLTESQLAQLSQKDKDLQNKDQDLQEKERMLREMQAIIA-----R 129 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +L KK++ TL + + E + +S+ D +F S+ P+ + Sbjct: 130 QDELTKKLNQTLRDALVGFNSDELTMEIRDGKVYVSMSD---KLLFKSGSTGVEPKGVEA 186 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL-MKSGVSEDR 308 L+ + +VL + + I + GHTD P + +DNW LS+ RA S ++L K V+ R Sbjct: 187 LKVLADVLNKNPDIQILVEGHTDNVPIKTAVFKDNWDLSVARATSITRMLNEKYAVAATR 246 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 ++ SG + K ++D + NRR +I++ + Sbjct: 247 MTA-SGRGEYFPKASNDTTEGKAKNRRTEIILSPK 280 >gi|153008534|ref|YP_001369749.1| hypothetical protein Oant_1203 [Ochrobactrum anthropi ATCC 49188] gi|151560422|gb|ABS13920.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 343 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 115/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + +S + + + SE + Sbjct: 79 MQDTIANLQASLSSTESERSRLQSLLNEGSGAGAAAEKRAGELSESLDAEKQVSARALSQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQISALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG--------EVL 259 G L E I I+ ++ +F S+ P ++K+ E+ Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSADINPAGQDEMKKLADAVIQLNQEIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLTGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341 ++ ASD ++ NRRI++ + +R Sbjct: 318 YQPLDASDTADARSKNRRIELKLTER 343 >gi|170736167|ref|YP_001777427.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818355|gb|ACA92937.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 223 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRN 279 G+ I I +F+ + LP++ VL +I + L AH+T I + GHTD+ P N Sbjct: 104 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSAHTTGDILVEGHTDSVPIAN 160 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 NW LS RA S + L + GV+ R++ I G A + +A + NRR+ I Sbjct: 161 AKYESNWELSSARAGSVVRYLSERGVAPHRLAAI-GRADTQPLVAGGDAGSRARNRRVTI 219 Query: 337 LV 338 V Sbjct: 220 FV 221 Score = 38.7 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 + + G W I YAD +T LM FL ++++ Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQ 48 >gi|91781366|ref|YP_556573.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans LB400] gi|91694026|gb|ABE37223.1| putative flagellar motor protein (MotB) [Burkholderia xenovorans LB400] Length = 230 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 11/147 (7%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K++ S L+ L ++ + T + I+I +F+ + LPE+ VLQ+I Sbjct: 90 KQLLSLLAPLRDNH---RITISQTPQAVEIAI---NARILFNSGDARLLPESFAVLQQIA 143 Query: 257 EVLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + I + GHTD+ P NW LS RA + + G+ R++ I G Sbjct: 144 AVLRDRAKNNILVEGHTDSLPISTAKYESNWELSSARAGAVVRFFADRGIEGHRMAAI-G 202 Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339 A + I + N+ANRR+ ILVE Sbjct: 203 RADNFPLIIGNDAVANAANRRVTILVE 229 Score = 40.2 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 + D+ + W I YAD +T LM FL ++++ + + Sbjct: 17 RDESHDSGAHPDRWLISYADLITTLMVLFLALYVLELAKNSELQ 60 >gi|168186129|ref|ZP_02620764.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund] gi|169295847|gb|EDS77980.1| chemotaxis MotB protein [Clostridium botulinum C str. Eklund] Length = 242 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS 267 +N+ V + G+++ + + +FD + + +L KI E++ + Sbjct: 104 KNNLDGTVQVKKDARGVILEL---KENILFDSGQADIKSSSKEILDKISELIKSVPNGVV 160 Query: 268 IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325 I GHTD P N NW LS RA + + + + G +++ + +G+ + +D Sbjct: 161 IEGHTDNVPIHNSKYDSNWELSTQRAVNVLKYFVVNKGEKPEKL-QAAGYGEYHPIAKND 219 Query: 326 PM--NSANRRIDILV 338 + NRR++IL+ Sbjct: 220 TYADRAKNRRVNILI 234 Score = 37.2 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 2/93 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ I W YAD +T+L+ FF++++ ++ D K + F Sbjct: 1 MSRRKKIQQGEGGGEEWLQTYADTITLLLTFFVLLYASSSIDAVKFKQMSSSFQNVFSG- 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 + S I D E + + + N Sbjct: 60 -SNSNSILDFNASGEAPIVGPPEEMGSKAGSGN 91 >gi|229105135|ref|ZP_04235786.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] gi|228678316|gb|EEL32542.1| OmpA/MotB domain protein [Bacillus cereus Rock3-28] Length = 233 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ + N K+ A +++ + +L Sbjct: 24 KQMAVAFRSELAGGTGNKEFLSDQKPNEEKELSANSLESEQIKKNAEAEVKQQEMNELKA 83 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + T G++++I++ +FD + E++ + +++ Sbjct: 84 VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 140 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + + S I G Sbjct: 141 LLVSASPREITVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-G 199 Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 200 YGEYRSIAPNDTPEGKAKNRRVEVFILP 227 >gi|229062194|ref|ZP_04199517.1| OmpA/MotB domain protein [Bacillus cereus AH603] gi|229169237|ref|ZP_04296950.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228614220|gb|EEK71332.1| OmpA/MotB domain protein [Bacillus cereus AH621] gi|228717088|gb|EEL68766.1| OmpA/MotB domain protein [Bacillus cereus AH603] Length = 233 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ ++ + K+ A +K+ + +L Sbjct: 24 KQMAVAFRSELAGGTGNKEFLSDQKPKEEKELSASSLESEKIKKDAEAEVKKQEMNELKA 83 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + T G++++I++ +FD + E++ + +++ Sbjct: 84 VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 140 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + ++ S I G Sbjct: 141 LLVSASPREITVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPEKFSAI-G 199 Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 200 YGEYRSIAPNDTPEGKAKNRRVEVFILP 227 >gi|288573018|ref|ZP_06391375.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568759|gb|EFC90316.1| OmpA/MotB domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 240 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 8/175 (4%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + LP A + +++ Q + S L + + V + G+ +S+ D Sbjct: 66 QEDPLPYGGSSGYDAGEERRQTQSTFQVDRELRSFLKDQEMEQDVSVIVDQRGVTVSLSD 125 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSL 289 Q +F PE +L K+GE L +++ GHTD P R RDNW LS Sbjct: 126 Q---LLFPLGGVDIRPEGKRLLAKLGEFLKGRIPALAVEGHTDDRPLRGGPYRDNWGLSA 182 Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 RA L+ +G+S I + G+ R + + D S NRR+D+++ + Sbjct: 183 IRAAIVASYLVDAAGISPS-IVQAVGYGPFRPVVPNDSDENRSRNRRVDLVILSK 236 >gi|303239756|ref|ZP_07326280.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] gi|302592693|gb|EFL62417.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] Length = 277 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 10/201 (4%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSIN-KEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 G + E S+ EEN +S K K ++++++ I Sbjct: 57 SGGAGMMEGDGNSVIPLVKNESSVGTSEENSNDITVSTTKSNETKEDEKMKEIKDNIEKE 116 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 +S N +K VL G+ ISI D +F+ + E +L K+ ++ Sbjct: 117 ISEEGYSNNIKLVL---DSEGLEISIQD---VVLFNTGEADIKKEVYPLLLKLTGIIKGL 170 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD P N R NW LS RA + + G I + K Sbjct: 171 NNSIKVVGHTDNVPIHNDKFRSNWDLSSFRAINVMSFMRDQGKLRPEKFSIQACGEFKPK 230 Query: 322 --IASDPMNSANRRIDILVED 340 +++ + NRR++I + Sbjct: 231 YDNSTEEGRAKNRRVEIYIVR 251 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 4/143 (2%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + + +W + Y+D MT+L+A F+VM+ ++ TD+ K + + F+ + Sbjct: 4 KKVHHEEHADETWLLPYSDMMTLLLALFIVMFAMSKTDNAKMKEMSEQFSIV----FSGG 59 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G+ + N + + +N+ K+ ++++ + Sbjct: 60 AGMMEGDGNSVIPLVKNESSVGTSEENSNDITVSTTKSNETKEDEKMKEIKDNIEKEISE 119 Query: 141 EHCKNSLTRDSEKGKDLCKSTDL 163 E N++ + D+ Sbjct: 120 EGYSNNIKLVLDSEGLEISIQDV 142 >gi|125974911|ref|YP_001038821.1| OmpA/MotB [Clostridium thermocellum ATCC 27405] gi|281418623|ref|ZP_06249642.1| OmpA/MotB domain protein [Clostridium thermocellum JW20] gi|125715136|gb|ABN53628.1| OmpA/MotB [Clostridium thermocellum ATCC 27405] gi|281407707|gb|EFB37966.1| OmpA/MotB domain protein [Clostridium thermocellum JW20] Length = 266 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 121/329 (36%), Gaps = 73/329 (22%) Query: 19 KKVAIDDTPNNLGS--WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K DD P + G+ W Y+D +T+++ FF++ + + + +K F +L Sbjct: 5 RKQLTDDEPASEGAPEWLQTYSDMVTLVLTFFVL--LFSMSTISKEK-----FEQLSSSL 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A G + + + S+ E+ T + ++ Sbjct: 58 SAAFMG--TGRGGVYGYNDGTVLYSVKENTTGDILE------------------------ 91 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 D E++ N+ ++ + + A K ++++D Sbjct: 92 -------------------------DGEEAFNEGKSAEIGAFTGGN--ADKEAQKIEDFI 124 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + + + D VK + + + + + +FD + L+KIG Sbjct: 125 NEVQNIVEEMDLDEYVKVI---EDDKSLTVRM---NSVILFDLGKADIKEPGKETLRKIG 178 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 ++ + I+GHTD P + NW LS RA + L+ GV +++ +G Sbjct: 179 TLIKQLNKNAVIQGHTDNLPINTMLFPTNWELSTKRATNVVLFLVDECGVDPVKLTA-TG 237 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 R +D NRRIDI++E + Sbjct: 238 NGEFRPIAPNDTEENRQKNRRIDIVIEKQ 266 >gi|149376619|ref|ZP_01894379.1| Flagellar motor protein [Marinobacter algicola DG893] gi|149359137|gb|EDM47601.1| Flagellar motor protein [Marinobacter algicola DG893] Length = 260 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 74/174 (42%), Gaps = 8/174 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D + + + + + + A R + L+ +A +++ L+ + V Sbjct: 71 DQSRRSTPQAAEDVINPPVTEAPQNPSMNAEGRTEALRAMADQLALEFDELINQGV---V 127 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 ET+ + +S+ RN+ +F + P + V++KI VL + I + G TD Sbjct: 128 TLETSDEWLELSL---RNSLLFGSGDAEPHYDAFDVVEKIAAVLRNRDNAIRVEGFTDNR 184 Query: 276 PF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 P + NW LS R+ + ++L GV +R++ + G+ H+ +D Sbjct: 185 PINTSAFPSNWELSAARSAAVVRMLSMEGVEAERLAAV-GYGEHQPVARNDTEE 237 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 1/114 (0%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGI 83 DD +N W I YADF+T+L AFF+VM+ +++ ++ K + + + + I Sbjct: 8 DDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLTGVFNAPQRSFQPI 67 Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + Q D+ I+ +T+ + + + + + + + + + + Sbjct: 68 EVGDQSRRSTPQAAEDV-INPPVTEAPQNPSMNAEGRTEALRAMADQLALEFDE 120 >gi|78223750|ref|YP_385497.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78195005|gb|ABB32772.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 292 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 12/243 (4%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS-TDLEKSI 167 + + G+ + R E + K K L +S DL + + Sbjct: 50 QKLSAENGALKAQLAKVREEAAGLAKEKEKLGADNKELEQVLRAKTDTLSQSVADLRQKV 109 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 E ++ R++++++++K L + + V + + ++ Sbjct: 110 TDLETENTRLKAEIAETRKAREEKVREVSKTYEDLLDRMKGEIAQGQVTISELKGKLTVN 169 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN----IAR 282 ++D +FD + + VL K+ ++L + I I GHTD Sbjct: 170 MVD---AILFDSGKAEVKQGGMEVLAKVVDILKGVQDKMIRIEGHTDNVQIVGNLTKRFP 226 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 NW LS RA + + L G+ + ++ +R ++D + NRRI+I++ Sbjct: 227 TNWELSAARAINVARYLQGQGIDPTVLVAVA-NGEYRPVASNDTEEGRAKNRRIEIVLVP 285 Query: 341 RQG 343 R Sbjct: 286 RDA 288 >gi|170722824|ref|YP_001750512.1| flagellar motor protein MotD [Pseudomonas putida W619] gi|169760827|gb|ACA74143.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 285 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 10/182 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + S+ E + LA L+ ++ + L+ + Sbjct: 69 GDEQPLSVKPAEPLIKDSEQTDAGLAQNSVDPLKTISDDVRDAFGDLIK---SDQMTIRG 125 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 + I + ++ +F ++P + +++K+ +L + + G TD P R Sbjct: 126 NELWVEIEL---NSSLLFGSGDAMPSDKAFDIIEKVANILKPFANPVHVEGFTDNLPIRT 182 Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA S ++L GV+ R++ + G+ ++ +D + NRR+ + Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVAGNDTAEGRARNRRVVL 241 Query: 337 LV 338 ++ Sbjct: 242 VI 243 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPF 72 ++++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I Q FN Sbjct: 1 MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDP 59 Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 +++ G + K D + +NSVD ++ + Sbjct: 60 ERSMKPIPIGDEQPLSVKPAEPLIKDSEQTDAGLAQNSVDPLKTISDDVRDA 111 >gi|262395314|ref|YP_003287167.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] gi|262338908|gb|ACY52702.1| Flagellar motor rotation protein MotB [Vibrio sp. Ex25] Length = 430 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%) Query: 199 ISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 IS +S +A I KG++ E + + IS+ Q +F+ S+ + V+ K+ Sbjct: 287 ISERISMYLATEIGKGLINVEPLQDRVRISLKSQD---LFESGSADVVAYIQPVISKLAR 343 Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + I + GHTD P + NW LSL RA + + L+ + E R+ G Sbjct: 344 TLESTQGKIIVTGHTDDRPIFTSKYPSNWHLSLARATAMSEQLISNSTLEGRVIP-EGLG 402 Query: 317 HHRLKI--ASDPMNSANRRIDILVE 339 R + SD + NRRI+I + Sbjct: 403 DARPLVENNSDENRAINRRIEIDLL 427 >gi|328553736|gb|AEB24228.1| flagellar motor protein MotB [Bacillus amyloliquefaciens TA208] Length = 265 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 10/207 (4%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 L S + K + +K++ K+K ++ L+ + K+++ Sbjct: 59 TGGTGVLEYSSVTPPENEKDGIDQLKKDKDKEKEKDKEQKKKEREAADRQELEGVQKQVN 118 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + + + + T+ G+LI+I D FD ++ E I + ++I +L Sbjct: 119 QFIKN---KKLEHQLETKLTKEGLLITIKDS---IFFDSGQAVIRQEDIPLAKEISNLLV 172 Query: 261 HSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I I GHTD P +N NW LS+ RA + +L ++ + ++ GF + Sbjct: 173 LNPPRNIIISGHTDNVPIKNSQFQSNWHLSVMRAVNFMAILTENPKLDAKVFSAKGFGEY 232 Query: 319 RLKIASDP--MNSANRRIDILVEDRQG 343 + ++ S NRR+++L++ R Sbjct: 233 KPAASNKTAEGRSKNRRVEVLIQPRNA 259 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 17/204 (8%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +KK D + SW I YAD +T+L+A F+V++ +++ D + + + FN Sbjct: 3 RKKKKKHDDEHVDESWLIPYADLLTLLLALFIVLFAMSSVDAAKFQMLSKSFNAV----F 58 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T G+ + + ++ K+ +D +++K+ + + + Sbjct: 59 TGGTGVLEYSSVTPPENE------------KDGIDQLKKDKDKEKEKDKEQKKKEREAAD 106 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q K K L + + + + + A+ R++ + LAK Sbjct: 107 RQELEGVQKQVNQFIKNKKLEHQLETKLTKEGLLITIKDSIFFDSGQAVIRQEDIP-LAK 165 Query: 198 KISSTLSGLVADNIVKGVLFETTR 221 +IS+ L NI+ + Sbjct: 166 EISNLLVLNPPRNIIISGHTDNVP 189 >gi|239832801|ref|ZP_04681130.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239825068|gb|EEQ96636.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 343 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 114/326 (34%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++ + + + S + Sbjct: 79 MQDTIANLQASLSTAETERSRLQSLLNEGSGAGAAAEKRAGELSASLDAEKQVSARALSQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQISALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266 G L E I I+ ++ +F SS P ++K+ + + + I Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSSDINPAGQDEMKKLADAVNQLNQEIP 258 Query: 267 -------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341 ++ ASD ++ NRRI++ + +R Sbjct: 318 YQPLDASDTADARAKNRRIELKLTER 343 >gi|116619472|ref|YP_821628.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116222634|gb|ABJ81343.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 267 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 13/188 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + K+ +++ + EN PP + K L L K + S L + Sbjct: 74 EAKKAPLSQQTTEERENPTAPPPRPAETHPPDLAKSLDTLQKGLDSELKN-------GKL 126 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 G++IS+ R F P ++ +L KI V+ + + GHTD+ Sbjct: 127 QLRLDPRGLIISM---REATFFASGDDAVAPGSLPILTKIAAVVQSLPNPVRLEGHTDSR 183 Query: 276 PFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANR 332 P + R NW LS R+ + ++L ++G+A + ++ + NR Sbjct: 184 PIHTSRFRSNWELSAARSIAMLELLRDRFQIPASRMAVAGYAENAPADTNETEEGRAHNR 243 Query: 333 RIDILVED 340 R+D+++ Sbjct: 244 RVDLVLLS 251 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 4/157 (2%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 P N W + YADF+T+L AFF+VM+ +D + +A+ + Sbjct: 3 RKKAPEPENHERWLVSYADFITLLFAFFVVMFASTQSDKNKARAVSDSVR----EALEHG 58 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 + R + + T+ + + + Sbjct: 59 QFSSAISTVLGRGKHEAKKAPLSQQTTEERENPTAPPPRPAETHPPDLAKSLDTLQKGLD 118 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 KN + + L S ++ P Sbjct: 119 SELKNGKLQLRLDPRGLIISMREATFFASGDDAVAPG 155 >gi|302874600|ref|YP_003843233.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|307690789|ref|ZP_07633235.1| OmpA/MotB domain-containing protein [Clostridium cellulovorans 743B] gi|302577457|gb|ADL51469.1| OmpA/MotB domain protein [Clostridium cellulovorans 743B] Length = 236 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTP 235 P + I+ + ++ + + + S + L+ N ++G V GI I + Sbjct: 69 PEGEVPIVGEETPQKDAEKSVDLYSQIQQLIDKNTLQGQVKLTKDERGINIEL---NEKI 125 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD + + L KI E++A +I I GHTD P + ++N LS RA S Sbjct: 126 LFDSGKAEIKTDFATTLNKISEIIASIGNLIEIEGHTDNVPISGVYKNNRDLSYARANSV 185 Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 + G+S++R+ +K G + SD + NRR++IL+ Sbjct: 186 LEYFASRGISQNRMVTKAYGEWYPIKPNDSDANRAENRRVNILI 229 >gi|116878566|ref|YP_357384.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380] gi|114843202|gb|ABA89214.2| chemotaxis protein MotB [Pelobacter carbinolicus DSM 2380] Length = 299 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 97/232 (41%), Gaps = 12/232 (5%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 Q + + + + +++ + + + T+L + I++ + Sbjct: 67 QQLETSRNTAVTLRQDNLRAKADIARLEKILANRSAETGQAMTELRQDIDRLQEEKRHLN 126 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 S+ + + R+ R+ L + L ++ V + + +++++ +FD Sbjct: 127 SQLEQEHLARQARIAQLKTTYDDLVDKLESEIKRGEVTISDLQGRLTVNMVE---KILFD 183 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLSLDRAY 293 + P + +L++IG +L ++ + I + GHTD P +I R NW LS RA Sbjct: 184 SGKADIKPAGLNILKRIGTILKNTADKSIRVEGHTDNVPISPRLKDIYRSNWELSTARAG 243 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 S L G+S +R+ + GF + ++ + NRRI I++ +Q Sbjct: 244 SVVHFLQDRLGISGERL-SVCGFGPYMPIASNATAQGRAQNRRIQIVLVPQQ 294 >gi|146307821|ref|YP_001188286.1| flagellar motor protein MotD [Pseudomonas mendocina ymp] gi|145576022|gb|ABP85554.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 269 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 10/172 (5%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 EE + LQ +A + L+ + I I + Sbjct: 70 EERPRTGEPENTSLDDPSADATLQSIASSVREAFGELIQ---SDQLTVRGNEMWIEIELS 126 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS 288 ++ +F ++P + +++K+ ++LA + + G TD P + NW LS Sbjct: 127 ---SSLLFPSGDALPNNQAFDIIEKVAKILAPYQNPVKVEGFTDNLPIQTSQFPTNWELS 183 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RA S ++L GV R++ + G+ + A+ + NRR+ +++ Sbjct: 184 SARAASIVRMLAMDGVDPSRLAAV-GYGEFQPIADNATAEGRARNRRVVLVI 234 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 5/165 (3%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ D + W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 3 RRRHHEDHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSESLTGVFNQPD 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + K I + P + S+D+ ++ S + + + N Sbjct: 61 RSIKPIPVGEERPRTGE--PENTSLDDPSADATLQSIASSVREAFGELIQSDQLTVRGNE 118 Query: 138 QQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 E +SL S ++ D+ + + K + P+ E Sbjct: 119 MWIEIELSSSLLFPSGDALPNNQAFDIIEKVAKILAPYQNPVKVE 163 >gi|256003832|ref|ZP_05428819.1| OmpA/MotB domain protein [Clostridium thermocellum DSM 2360] gi|255992170|gb|EEU02265.1| OmpA/MotB domain protein [Clostridium thermocellum DSM 2360] gi|316939122|gb|ADU73156.1| OmpA/MotB domain protein [Clostridium thermocellum DSM 1313] Length = 266 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 121/329 (36%), Gaps = 73/329 (22%) Query: 19 KKVAIDDTPNNLGS--WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K DD P + G+ W Y+D +T+++ FF++ + + + +K F +L Sbjct: 5 RKQLTDDEPASEGAPEWLQTYSDMVTLVLTFFVL--LFSMSTISKEK-----FEQLSSSL 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A G + + + S+ E+ T + ++ Sbjct: 58 SAAFMG--TGRGGVYGYNDGTVLYSVKENTTGDILE------------------------ 91 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 D E++ N+ ++ + + A K ++++D Sbjct: 92 -------------------------DGEEAFNEGKSAEIGAFTGGN--ADKEAQKIEDFI 124 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + + + D VK + + + + + +FD + L+KIG Sbjct: 125 NEVQNIVEEMDLDEYVKVI---EDDKSLTVRM---NSVILFDLGKADIKEPGKETLRKIG 178 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 ++ + I+GHTD P + NW LS RA + L+ GV +++ +G Sbjct: 179 TLIKQLNKNAVIQGHTDNLPINTMLFPTNWELSTKRATNVVLFLVDECGVDPVKLTA-TG 237 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 R +D NRRIDI+++ + Sbjct: 238 NGEFRPIAPNDTEENRQKNRRIDIVIDKQ 266 >gi|88858085|ref|ZP_01132727.1| putative chemotaxis protein [Pseudoalteromonas tunicata D2] gi|88819702|gb|EAR29515.1| putative chemotaxis protein [Pseudoalteromonas tunicata D2] Length = 321 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 113/323 (34%), Gaps = 66/323 (20%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 +++ I N++ W + YAD+MT++ A F+V++ + T ++ + Sbjct: 5 RQLTISSENNHVERWLVSYADYMTLMFALFVVLYSLAITKEEEFSVLSDSL--------- 55 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 S+ ++ + + E + S Sbjct: 56 ------------------------------ESIFVQPEIRTEDGSGVKGEGLLLKNSVES 85 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + N++T + + + DL K L L++E A+ + + Sbjct: 86 EFNLYGNAITDEERGPELVDGFGDLVNLKKKRLGSPLESLNQELKTALFDHIEAGEAKVE 145 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + I + + +F S++ V++ I E+ Sbjct: 146 LDQ--------------------DWLTIELS---SGLLFGSGSAVATLNAKKVVKDIYEI 182 Query: 259 LAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + I IRG TD P N + NW+LS+ RA L + G++ ++ I G+ Sbjct: 183 VKSVDNYIRIRGFTDDRPINNELFSSNWQLSVARATEMLLQLERLGINPAQM-AIEGYGE 241 Query: 318 HRLKIASDPM--NSANRRIDILV 338 H +++ +ANR++ I + Sbjct: 242 HSPTSSNETEEGRAANRKVVIAL 264 >gi|163789638|ref|ZP_02184076.1| chemotaxis motB protein [Carnobacterium sp. AT7] gi|159875170|gb|EDP69236.1| chemotaxis motB protein [Carnobacterium sp. AT7] Length = 249 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 12/211 (5%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++ E S+ G+ + + + + S + L +E +L Sbjct: 44 SAEKFEAAAKSMQSAFGGGESMLEGSTVVDSKTDTSDETLEETLEEISEETVDP----EL 99 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K + + L NI E + GI ++I + + +F S+I L + Sbjct: 100 LKMYNEVVQFLEDKNITSQASVEYDQDGIYVNI---QESILFGSGSAIIADSGKQTLNDL 156 Query: 256 GEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKIS 313 GE++ + I G+TD P + NW LS RA S + L + V+ R++ Sbjct: 157 GELIQKFDNAVVIEGYTDNVPMYNANFSSNWELSTGRALSVLRYLSEERDVNPTRLAA-K 215 Query: 314 GFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 G+ + + +D S NRR++I++ Q Sbjct: 216 GYGEYHPLVPNDSEENRSKNRRVNIVIVYDQ 246 >gi|148546771|ref|YP_001266873.1| flagellar motor protein MotD [Pseudomonas putida F1] gi|148510829|gb|ABQ77689.1| OmpA/MotB domain protein [Pseudomonas putida F1] gi|313497822|gb|ADR59188.1| Flagellar motor protein MotD [Pseudomonas putida BIRD-1] Length = 285 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 10/182 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + S+ E E LA L+ ++ + L+ + Sbjct: 69 GDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTISDDVRDAFGDLIN---SDQMTVRG 125 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 + I + ++ +F ++P + +++K+ +L + + G TD P R Sbjct: 126 NELWVEIEL---NSSLLFGSGDAMPSDKAFAIIEKVANILKPFANPVHVEGFTDNLPIRT 182 Query: 280 IARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA S ++L GV+ R++ + G+ ++ ++D + NRR+ + Sbjct: 183 AQYPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQPVASNDTAEGRARNRRVVL 241 Query: 337 LV 338 ++ Sbjct: 242 VI 243 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 21/203 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I Q Sbjct: 1 MRRRRHTEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQA-------- 51 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + N PERS I + ++ ++ + + + Q + N + Sbjct: 52 ------LLGVFNDPERS-MKPIPIGDEQPLSVRPAEPLVKDSEQTEAGLAATNVDPLKTI 104 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S L D E + E N L S + + + K ++ +A Sbjct: 105 SDDVRDAFGDLIN-----SDQMTVRGNELWVEIELNSSLLFGSGDAMPSDKAFAIIEKVA 159 Query: 197 KKISSTLSGLVADNIVKGVLFET 219 + + + + + T Sbjct: 160 NILKPFANPVHVEGFTDNLPIRT 182 >gi|146282902|ref|YP_001173055.1| flagellar motor protein MotD [Pseudomonas stutzeri A1501] gi|145571107|gb|ABP80213.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] Length = 278 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A+ + T L+A++ + I I + ++ +F ++P + + Sbjct: 99 LERIAQSMRETFGELIAND---QLTIRGNELWIEIELS---SSLLFPSGDALPNDQAFQL 152 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ +LA + + G TD P + NW LS RA S ++L GV+ R++ Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLPISTDKFPTNWELSAARAGSVVRMLAAQGVNPSRLA 212 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILV 338 + G+ + A+ + NRR+ ++V Sbjct: 213 AV-GYGEFQPVADNATAEGRARNRRVVLVV 241 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ A ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 1 MARRRAPEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSLVGVFNQV 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + K I + P + D+S E +T + ++ E ++N Sbjct: 60 DRSVKPIPIGEERPRTTEP---DVSQVEDLTGPASGEPTLDPLERIAQSMRETFGELIAN 116 Query: 137 SQQS 140 Q + Sbjct: 117 DQLT 120 >gi|330721195|gb|EGG99305.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC2047] Length = 307 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L +L+ ++ S LV D + + T I IS+ + +F+ S+ +++ V Sbjct: 110 LSELSDQVESAFGDLVRDG---EITISGSETWIEISLS---SGLLFNSGSANLNRQSLPV 163 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L++I +L+ + + G TD P ++ NW LS R+ + ++L +SGV +R++ Sbjct: 164 LEEISSILSGYENPVHVEGFTDDIPIQSGIFPSNWELSAARSAAVVRLLSESGVEPNRLA 223 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILV 338 + G+ + +++ NRR+ ++V Sbjct: 224 AV-GYGQFQPIASNESAEGRGKNRRVALIV 252 >gi|115373102|ref|ZP_01460404.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|310824354|ref|YP_003956712.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1] gi|115369858|gb|EAU68791.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|309397426|gb|ADO74885.1| chemotaxis protein MotB [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 16/208 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 ++ LT + + L + + K++N E L++ K KR ++LA+ + Sbjct: 75 ATSESRLTASAAERSALERKNEELKALNDELAKNTRRLAEAKEALEKRSAEYENLAQSLK 134 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 +S + + + + + D +F S+ E L KI + L Sbjct: 135 QEISD-------GKIQLSELQGRMTVQLKD---KILFASGSTRVGKEGQEALAKIADALK 184 Query: 261 HSTEVI-SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 I + GHTD P NW LSL RA + + L +GV + +G+ Sbjct: 185 SVQGRIIRVEGHTDDVPTDKNGPFPSNWELSLARAMAVVRALQDAGVDPT-VLSAAGYGQ 243 Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343 ++ A+D S NRRI+I++ + G Sbjct: 244 YQPIAANDSAENRSLNRRIEIVLAAKAG 271 >gi|90422320|ref|YP_530690.1| hypothetical protein RPC_0800 [Rhodopseudomonas palustris BisB18] gi|90104334|gb|ABD86371.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 341 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 102/324 (31%), Gaps = 20/324 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D ++ L+ + + + + + L + D + + N Sbjct: 19 FVDALSTLVLAIVFLLSVFLVVQFFLSQEVTGKDKALQELNAKLAQLNDLLSLEKLGKLN 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D S + + N + ++ + + Sbjct: 79 LEDQLSQLRAGLASSESERDRIKGLYDGLAGAGNDAAGRAGELNKALDSEKQLSARALAQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + ++ ++ L + + + R+ DL ++++ L+ V + Sbjct: 139 VEVLNQQISALRRQLAALEAALDASEQRGKESQSRIADLGQRLNVALAQRVQELSRYRSE 198 Query: 217 FETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266 F IL I I+ + FD + PE L K+ L + I Sbjct: 199 FFGRLRAILGNRPDIRIVGDRFVFESEVFFDTGQAQLKPEGRAELDKLASALIDLDKKIP 258 Query: 267 -------SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + GHTD P + NW LS RA S Q L+ GV R+ +GF + Sbjct: 259 AEIAWVLRVDGHTDVRPITGAFKSNWELSSGRAISVVQYLVSLGVPPQRLVA-AGFGEFQ 317 Query: 320 LKIASDPMNS--ANRRIDILVEDR 341 + + NRRI++ + +R Sbjct: 318 PLDVAATEEAYKRNRRIELKLTER 341 >gi|104782795|ref|YP_609293.1| flagellar motor protein MotD [Pseudomonas entomophila L48] gi|95111782|emb|CAK16506.1| flagellar motor protein MotB [Pseudomonas entomophila L48] Length = 285 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 10/212 (4%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +I Q S+ K + + S+ E + LA Sbjct: 39 SINEGKYKQISQALIGVFNDPERSMKPIPIGDERPLSVKPAEPLIKDSEQTDAGLAQTSA 98 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L+ + + L+ N + + I + ++ +F + ++P Sbjct: 99 DPLKTITDDVHDAFGDLIKSN-----QMTVRGNELWVEI-ELNSSLLFASADAMPSDVAF 152 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDR 308 +++K+ ++L + + G TD P R NW LS RA S ++L GV+ R Sbjct: 153 EIIEKVAKILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPAR 212 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++ + G+ ++ +D + NRR+ +++ Sbjct: 213 MASV-GYGEYQPVAGNDTADGRARNRRVVLVI 243 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY----FNPFG 73 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K I Q FN Sbjct: 3 RRRKTEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKQISQALIGVFNDPE 60 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 +++ G + K D + + S D T+ Sbjct: 61 RSMKPIPIGDERPLSVKPAEPLIKDSEQTDAGLAQTSADPLKTITDD 107 >gi|327481242|gb|AEA84552.1| flagellar motor protein MotD [Pseudomonas stutzeri DSM 4166] Length = 278 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A+ + T L+A++ + I I + ++ +F ++P + + Sbjct: 99 LERIAQSMRETFGELIAND---QLTIRGNELWIEIELS---SSLLFPSGDALPNNQAFQL 152 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ +LA + + G TD P + NW LS RA S ++L GV+ R++ Sbjct: 153 IDKVAGILAPFDNPVHVEGFTDNLPISTDKFPTNWELSAARAGSVVRMLAAQGVNPSRLA 212 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILV 338 + G+ + A+ + NRR+ ++V Sbjct: 213 AV-GYGEFQPVADNATAEGRARNRRVVLVV 241 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ A ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 1 MARRRAPEEHENH-ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSLVGVFNQV 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + K I + P + D+S E +T ++ E ++N Sbjct: 60 DRSVKPIPIGEERPRTTEP---DVSQVEDLTGPGSGEPTLDPLERIAQSMRETFGELIAN 116 Query: 137 SQQS 140 Q + Sbjct: 117 DQLT 120 >gi|254785497|ref|YP_003072926.1| OmpA family protein [Teredinibacter turnerae T7901] gi|237684013|gb|ACR11277.1| OmpA family protein [Teredinibacter turnerae T7901] Length = 305 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 10/153 (6%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 DL +++ LS + + V + I++ ++ +F S+ P + Sbjct: 76 DDLLNTLNAVLSQQIGAGM---VTVSGNEDWVEIAV---KSQLLFASGSAAPSTAAQQIF 129 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 ++ +VLA I++ GHTD P RN +NW LS RA + +L +GV+ +R++ Sbjct: 130 NELADVLAPFENAIAVSGHTDNVPIRNQQFQNNWELSAARAVAVVNLLAYAGVAPERLAA 189 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +G+ + ++ +ANRR+ + + + Sbjct: 190 -TGYGEFQPVADNNSAQGRAANRRVVLRIARTK 221 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 N W + YADF+T+L FF+VM+ ++ + + + + + + N Sbjct: 12 NHERWLVSYADFVTLLFGFFVVMYSVSQVSETKYRTLSETLSGAFSGAVQTPP-----TN 66 Query: 89 PPERSSQNKIDL 100 P + DL Sbjct: 67 LPRTALVAPDDL 78 >gi|157692040|ref|YP_001486502.1| flagellar motor protein MotB [Bacillus pumilus SAFR-032] gi|157680798|gb|ABV61942.1| flagellar motor protein B [Bacillus pumilus SAFR-032] Length = 254 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 10/191 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D E++ N + +E + L + K++ S ++ + + Sbjct: 66 DQSSMQSTEETENSNQTKKAAEEDEEAKAKARDHAVLTKVKKQVDSFIAN---KKLGAKL 122 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + T G+LI+I D FD ++ P+ + + ++I ++L + I I GHTD Sbjct: 123 ETKLTDEGLLITIEDS---IFFDSGRAVIRPQDVPLAKEISKLLVINPARDIVISGHTDN 179 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 P RN NW LS RA + +L+++ GF + ++D S N Sbjct: 180 VPIRNSDFESNWYLSAIRAVNFLSILLENSNLNQENFSTKGFGEFKPIASNDTAEGRSKN 239 Query: 332 RRIDILVEDRQ 342 RR+++L+ + Sbjct: 240 RRVEVLILPIE 250 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +K+ D + SW I YAD +T+L+A F+V++ ++ D + + + FN Sbjct: 3 RKRKKHDHDDHVDESWLIPYADLLTLLLALFIVLFASSSIDAAKYEQMAKSFNVV----F 58 Query: 78 TASKGIFDEQN 88 T G+ D+ + Sbjct: 59 TGGTGVMDQSS 69 >gi|328948405|ref|YP_004365742.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489] gi|328448729|gb|AEB14445.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489] Length = 240 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 25/217 (11%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S++ Q + SL+ ++ G L N + LP + K + L KK Sbjct: 37 PSESDAVQMAALQASLSNNNPGGGISVSPGSLANLGNVVSS--LPSIEKGRALGPAMKKA 94 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIV 250 + A ++ S + + G++IS+ F++ S+ E Sbjct: 95 ISSFAPEVKS-----------NKITITSDERGLVISLASDT---FFEEGSAELNIEEARG 140 Query: 251 VLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 L + + A + I GHTD P +I NW S RA + L GV Sbjct: 141 TLINLAKFFASPEVAGRRWRIEGHTDNRPVPASSIYPSNWEFSAARAANVLHYLADFGVD 200 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 E + I+G+A R K+++D + NRR+D++V D Sbjct: 201 EQQF-SIAGYADTRPKLSNDTAEGRAYNRRVDVIVLD 236 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGKNLM 77 K + +W Y D +T+++ FF++++ + +D A++ N G + Sbjct: 3 KREKKEPAKPSTAWMGTYGDMITLMLCFFVMLYDPSESDAVQMAALQASLSNNNPGGGIS 62 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + + + N + ++ + K + K E + Sbjct: 63 VSPGSLANLGNVVSSLPSIEKGRALGPAMKKAISSFAPEVKSNKITITSDERGL 116 >gi|118443271|ref|YP_877986.1| chemotaxis motB protein [Clostridium novyi NT] gi|118133727|gb|ABK60771.1| chemotaxis motB protein [Clostridium novyi NT] Length = 241 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 11/150 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +++ K+ S +N+ V + GI++ + + +FD + + +L Sbjct: 92 EEMYSKVKDFTS---KNNLDSTVQVKKDARGIILEL---KENILFDSGQADLKLSSKEIL 145 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310 KI ++ I I GHTD P N NW LS RA + + + G ++ Sbjct: 146 DKISALIESVPNGIIIEGHTDNVPIHNSKYDSNWELSTQRAVNVLKYFVVSKGEKPEKF- 204 Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILV 338 + +G+ + +D + NRR++IL+ Sbjct: 205 QAAGYGEYHPIAKNDNYVDRAKNRRVNILI 234 >gi|152984991|ref|YP_001349219.1| flagellar motor protein MotD [Pseudomonas aeruginosa PA7] gi|150960149|gb|ABR82174.1| probable chemotaxis protein [Pseudomonas aeruginosa PA7] Length = 296 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 76/198 (38%), Gaps = 10/198 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 +LT + K + + + + ++ LQ +A + Sbjct: 50 SETLTGVFNQPDRSLKPIPIGEERPRTTEPERTSVEEQPSDNAASADSLQQIADSVRGAF 109 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L+A + + + I I ++ +F ++P +++K+ ++LA Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFGIVEKVAKILAPYK 163 Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321 I + G TD P + NW LS RA S ++L GV R++ + G+ + Sbjct: 164 NPIHVEGFTDDVPIHSQRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222 Query: 322 -IASDPMNSANRRIDILV 338 AS + NRR+ +++ Sbjct: 223 DNASAAGRAKNRRVVLVI 240 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 1 MPRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + K I + P + + + S D + + Sbjct: 61 DRSLKPIPIGEERPRTTEPERTSVEEQPSDNAASADSLQQIADSVRGA 108 >gi|194014658|ref|ZP_03053275.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC 7061] gi|194013684|gb|EDW23249.1| chemotaxis protein MotB (Motility protein B) [Bacillus pumilus ATCC 7061] Length = 254 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 10/191 (5%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D E++ N + +E + L + K++ S ++ + + Sbjct: 66 DQTSMQSTEETENSNQTKKAAEEDEEAQAKARDHAVLTKVKKQVDSFIAN---KKLGAKL 122 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + T G+LI+I D FD +I P+ + + ++I ++L + I I GHTD Sbjct: 123 ETKLTDEGLLITIEDS---IFFDSGRAIIRPQDVPLAKEISKLLVINPARDIVISGHTDN 179 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 P RN NW LS RA + +L+++ GF + ++D S N Sbjct: 180 VPIRNSEFESNWYLSAIRAVNFLSILLENSNLNQENFSTKGFGEFKPIASNDTAEGRSKN 239 Query: 332 RRIDILVEDRQ 342 RR+++L+ + Sbjct: 240 RRVEVLILPIE 250 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +K+ D + SW I YAD +T+L+A F+V++ ++ D + + + FN Sbjct: 3 RKRKKHDHDDHVDESWLIPYADLLTLLLALFIVLFASSSIDAAKYEQMAKSFNVV----F 58 Query: 78 TASKGIFDEQN 88 T G+ D+ + Sbjct: 59 TGGTGVMDQTS 69 >gi|319791244|ref|YP_004152884.1| type IV / vi secretion system protein, dotu family [Variovorax paradoxus EPS] gi|315593707|gb|ADU34773.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus EPS] Length = 454 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 VK L T S++ R F S+ P+ ++ VL++IG+ LA + I GH Sbjct: 302 VKQGLVTVTDEADR-SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGDVLITGH 360 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +D P R++ NW LS RA + L V R+ + G A A+D Sbjct: 361 SDNQPIRSLRYPSNWHLSAARADAVKGALTTL-VDPARM-RSDGKADAEPVAANDTPANR 418 Query: 329 SANRRIDILVED 340 + NRR+DI++ Sbjct: 419 ARNRRVDIVLLT 430 >gi|332981443|ref|YP_004462884.1| OmpA/MotB domain-containing protein [Mahella australiensis 50-1 BON] gi|332699121|gb|AEE96062.1| OmpA/MotB domain protein [Mahella australiensis 50-1 BON] Length = 251 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 8/166 (4%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E +R QD + + + + N + E T + I ++ ++ +F+ Sbjct: 75 EGQDLEQRTNEPQDEFESLYEDMQRYIQQNNI-AATVEMTENKMEI-LLRFKDNVLFESG 132 Query: 241 SSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAY 296 + +P + VL I VL + I GHTD P + NW LS RA + Sbjct: 133 KADIIPSALPVLNNIAGVLKTYKEQIGGVRIEGHTDNVPIHTVMFPSNWELSTARAVTVL 192 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + ++ + G+ + +D + NRR+DI++ Sbjct: 193 RYFVERQHLPPEMLSAVGYGEYHPVATNDTIEGRAKNRRVDIVITR 238 >gi|326795346|ref|YP_004313166.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326546110|gb|ADZ91330.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 254 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 17/209 (8%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + + + T+ S G ++ K D + + N + Y P+ + + + + Sbjct: 56 SEGALTRLNPTQYSGGGTEIIKPADPQLATNDDLTYSKEPIDDVER---------EHVKE 106 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + T + A+N+ + I I + +F+ + L + + + Sbjct: 107 IANDTANKFAAENLDSQIAVFEDGEKITIRV---DGASLFESGEADVLWSAEPIFEALYR 163 Query: 258 VLAHST-EVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + ISI+GHTD P NW LS RA + + ++ G+ +R++ +G+ Sbjct: 164 IFVTYPDYNISIKGHTDNIPINTTRFPSNWELSAIRATTTLRYFLEKGIPPERMTA-TGY 222 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342 A + +D + NRR + +++ + Sbjct: 223 ADVIPLVPNDTPEHRAQNRRAEFVLQRNK 251 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 5/150 (3%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 + W + YAD M++L+ FF++++ ++ + T + + S+G Sbjct: 7 EEEEVAGWIVTYADLMSLLLVFFILLYSLSKLTESTLVSALSSI-----QIALNSEGALT 61 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 NP + S + + + DL + I + ++ + + Sbjct: 62 RLNPTQYSGGGTEIIKPADPQLATNDDLTYSKEPIDDVEREHVKEIANDTANKFAAENLD 121 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 S E G+ + D E L Sbjct: 122 SQIAVFEDGEKITIRVDGASLFESGEADVL 151 >gi|218133672|ref|ZP_03462476.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC 43243] gi|217991047|gb|EEC57053.1| hypothetical protein BACPEC_01541 [Bacteroides pectinophilus ATCC 43243] Length = 266 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 108/326 (33%), Gaps = 70/326 (21%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K+ + +W ++D M +L+ FF++++ ++ + + + + Sbjct: 3 KIKKREEKGGGAAWMNTFSDLMNLLLCFFVMLFAMSDPNQEKFQQLSASLASTFSIFNAG 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S + D + S + Q Sbjct: 63 SISMGD--------------------------------------------GVLIGSGASQ 78 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + +++ + + + L + + +A+ I Sbjct: 79 LNELAIYYNNMGMNSEGEITQEEIKDAAQQIQEAGL--------------QESEHMAENI 124 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L + + V + T +++++ + +FD S E + +L K+ +L Sbjct: 125 EKQLEQ---NMLSDDVEVKATSKYVMLNL---NSGILFDSGKSELKTEAVTLLDKVSSIL 178 Query: 260 -AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 ++ +I+I GHTD +P N DN LSL RAYS + L G + +G Sbjct: 179 WEYNDNMIAIEGHTDNNPIHNSKYPDNTMLSLYRAYSVFTYLTDQKGFDASTMLA-TGRG 237 Query: 317 HHRLKIASDP--MNSANRRIDILVED 340 ++ + NRR++I + + Sbjct: 238 ESVPIASNATAEGRAQNRRVEIKIYN 263 >gi|172058884|ref|YP_001815344.1| OmpA/MotB domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991405|gb|ACB62327.1| OmpA/MotB domain protein [Exiguobacterium sibiricum 255-15] Length = 257 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 87/211 (41%), Gaps = 13/211 (6%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 ++ + + S + G + ++ L S +E++ +K + + Sbjct: 39 NVDAVKLKAMSQSFSSVFNGGSGMITNSSLSTSQEEEDSKKTDARTKAQSY------EIA 92 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +L K + + K + E T G++ +I D +F + + + I + Q Sbjct: 93 ELEKIKEEANDYIKQQKLEKDIKVEVTNEGLVFNIRD---RALFSPAQADVKGDAIQIAQ 149 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + +L + + I + GHTD P + NW LS +RA S + L ++ + Sbjct: 150 GMSNLLVKAGQRQIQVSGHTDNIPINTVQYPSNWELSAERAISFMRALQRNPKLTPKRFT 209 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340 +SG+ ++ ++D + NRR+++L+ Sbjct: 210 VSGYGEYQPIASNDTESGRSQNRRVEVLIRP 240 >gi|242280812|ref|YP_002992941.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242123706|gb|ACS81402.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP--LSKEKILAMKRKKRLQDLAKKIS 200 N L + E L + ++ +E+N L P L ++++ KRL L +I Sbjct: 45 ANNDLAKFKELLGSLKDAFGVQMERKEEDNLALTPSDLKRKEVKMDSNDKRLLGLVLRIK 104 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + L A GV + + G+++S + +F+ S+ PE VL K+ +L Sbjct: 105 ALLDEDDATRKSSGVKAD--QDGVVVS---TDSATLFEPGSATLRPEAHKVLDKVISILK 159 Query: 261 HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHH 318 + +RGHTD S + NW LS RA SA ++ + G++ R+ + G+A Sbjct: 160 DHNYNLVVRGHTDNSEIHSRKFPTNWELSSARAASALRYIVEQGGIAPKRLKAV-GYADT 218 Query: 319 RLKIASD--PMNSANRRID 335 + + +D S NRR++ Sbjct: 219 QPLVKNDSPANKSKNRRLE 237 >gi|331007308|ref|ZP_08330507.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] gi|330418870|gb|EGG93337.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] Length = 434 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 103/290 (35%), Gaps = 14/290 (4%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 D + A + N L E+ + + +ID ++ + + Sbjct: 130 QDERVAASEKLNGEMDGLKKQLANTEQEKLAAQAGLKAEIDEIKNQLVQTEKDKNQSQEA 189 Query: 119 NQKKQYQRLENNIFYLSN-SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 + + E + + +Q + ++K + D E E + + Sbjct: 190 LSTIRNELEEKLVIKETEYEKQIAQLNEFSSLINQKYEATKAQLDEELVRIAEFSATIET 249 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 L + + K L +L K+++ + K L + + G ++I +T +F Sbjct: 250 LEERL---QREKTALSELTKQLALLDKTNAELSSEKSRLVQQFKDG--TTLIRLEDTILF 304 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLSLDRA 292 S+ L + + LA ISI GHTD P + NW LS RA Sbjct: 305 SSGSASLNARGQKTLSLVADTLAEFPNHLISIEGHTDHRPIVSTLAEKYPTNWELSAARA 364 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 A + LM+ G+ + + GFA+ R S NRRI+IL+ Sbjct: 365 SFAIRHLMEKGLPAKQFQAV-GFANTRPIAMDVDYASQKKNRRIEILLHP 413 >gi|58038715|ref|YP_190679.1| hypothetical protein GOX0240 [Gluconobacter oxydans 621H] gi|58001129|gb|AAW60023.1| Flagellar motor protein [Gluconobacter oxydans 621H] Length = 333 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 100/260 (38%), Gaps = 22/260 (8%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS--EKGKDLCKS 160 ++ ++ L + + Q Q L I L+ QS+ + D+ ++ + Sbjct: 75 NKSLSSTVATLADEKQHNQAQLQTLSTQIAALTGQLQSKDQALASADDTSKQQNSKISDL 134 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NI 211 + + ++ L EK + ++ DL K++ L+ V Sbjct: 135 QAQIEELTRQLQAISNALDIEKKAEQGKDAQIADLGSKLNLALADKVNQLKRYRSEFFGR 194 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------T 263 ++ +L + ++ ++ +F + S+ PE + + Sbjct: 195 LRDLLKDQKGVNVVGDRFVFQSEILFPQGSADLTPEGRKEITTLAHTFKQVASTIPTDLP 254 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322 ++ + GH D P + NW LS +RA + ++L+ GV ++ +GFA ++ Sbjct: 255 WILRVDGHADRQPIHSAFPSNWELSSERAITVVKLLIAEGVDPHHLAA-TGFADYQPLDA 313 Query: 323 ASDPMN-SANRRIDILVEDR 341 AS P + NRRI+ + DR Sbjct: 314 ASTPAAYARNRRIEFRLTDR 333 >gi|95929859|ref|ZP_01312600.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] gi|95134155|gb|EAT15813.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] Length = 246 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 Q L +I + ++ L D +K V R +++ I D +F SS P VL Sbjct: 83 QRLYTRIMTQMNRLRMDPSIKVVK---DRGAVILQINDS---ILFAPGSSTLKPAAFPVL 136 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISK 311 K+ E++ I GHTD PF NW LS+ R+ S + K+ + +R+S Sbjct: 137 AKVAELIRPLPLSARIEGHTDDIPFGRADMSNWDLSVARSVSVLKYFQKNDLLPLNRMSA 196 Query: 312 ISGFAHHRLKIASD--PMNSANRRIDILVED 340 + G+ + + +D + NRR++ ++E Sbjct: 197 V-GYGAEKPLVPNDSPENRAKNRRVEFVLES 226 >gi|42521782|ref|NP_967162.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100] gi|39574312|emb|CAE77816.1| chemotaxis motB protein [Bdellovibrio bacteriovorus HD100] Length = 249 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 10/150 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + + + ++ ++ V + G+ I++ + F + S+ PE + L K Sbjct: 99 VERSLDKSMDSAQKKLAIQDVYHDAV--GVRIAL---AASTFFQEGSAKLKPEALKSLDK 153 Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312 + +VL + I I GHTD P + NW L+ RA + + L+K + R + Sbjct: 154 VADVLKTHKKRIIIEGHTDDLPIAGTLFPSNWELAGGRASAVVRYLVKVHQMDPKRFVSL 213 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340 S + + + + D + NRRI+I + Sbjct: 214 S-YGDQKPVVPNDSDEHRAMNRRIEIFIVT 242 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 13/177 (7%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + N W + YADF+T+L AFF+VM+ + ++++ +K E +L Sbjct: 1 MAKKHRKHEEHENHERWLVSYADFITLLFAFFVVMYATSTSNEEKQKEFEDS---VKLSL 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +G D + S ++++ + K +E ++ + Sbjct: 58 HLVGRGGSDADSNSIGSIIGELEMPVGNFPKKGGPGEVEDY---------VERSLDKSMD 108 Query: 137 SQQSEHCKNSLTRDSEKGK-DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 S Q + + D+ + L ST ++ K + L L K + KKR+ Sbjct: 109 SAQKKLAIQDVYHDAVGVRIALAASTFFQEGSAKLKPEALKSLDKVADVLKTHKKRI 165 >gi|257875985|ref|ZP_05655638.1| flagellar motor protein MotB [Enterococcus casseliflavus EC20] gi|257810151|gb|EEV38971.1| flagellar motor protein MotB [Enterococcus casseliflavus EC20] Length = 254 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 15/192 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ ++T +K+ E + ++ ++L+ ++ ++S L+ A + + Sbjct: 70 DMGETTPRKKAATSAEAQAQEAAVRTQL----ENQQLEKISDQLSQELA---ASGLKEQT 122 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274 G+ I++ ++ +F S+ T L + + L I I GHTD Sbjct: 123 EVRLESDGLHITL---ASSILFASGSAEITDTTRQSLDLLSDSLKKLKANKIVIAGHTDN 179 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P + R NW LS RA + + + G ++ + I FA K ++ S Sbjct: 180 VPEKGNGRYQSNWDLSSARAITVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSE 239 Query: 331 NRRIDILVEDRQ 342 NRR++++++ + Sbjct: 240 NRRVEMIIQRTE 251 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 2/125 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K+K + +W + Y+D +T+L+A F+VM+ + DD+ + I+ F + Sbjct: 1 MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIKSEFGTILSSH 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + S I + E + + K S + + +V ++ + +K +L + Sbjct: 59 HSNSSVIGSVIDMGETTPRKKAATSAEAQAQEAAVRTQLENQQLEKISDQLSQELAASGL 118 Query: 137 SQQSE 141 +Q+E Sbjct: 119 KEQTE 123 >gi|94500736|ref|ZP_01307265.1| chemotaxis MotB protein [Oceanobacter sp. RED65] gi|94427058|gb|EAT12039.1| chemotaxis MotB protein [Oceanobacter sp. RED65] Length = 226 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 D+ K++ ++ N+ + V + G+ + D ++D S+ P+ + V Sbjct: 73 FSDIKKELDQIINQ---HNMQENVSVVIDKKGVKVEFSD---FSLYDSGSAAIRPQALPV 126 Query: 252 LQKIGEVLAHSTEV---ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 L ++ +V+ S + + GHTD P NW LS RA + + L+ GV ++ Sbjct: 127 LNEVTKVIESSVHKTHLVEVEGHTDDVPISTEKFPSNWELSAARASNVVKYLLGKGVKKE 186 Query: 308 RISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 ++ SG+A R K A + NRR+ I V Sbjct: 187 QLKA-SGYADSRPKSAPIEGQVMDAQQRAENRRVVIYVRR 225 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 8/181 (4%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT----KKAIEQYFNPFG 73 +++ D W + YAD +T+L+AFF+++ ++ + K+ + Sbjct: 12 RRRQTFDADGEG---WIVTYADAITLLLAFFVMILSVSDLNQGKIESLKEGLAGVLTGEK 68 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNS-VDLKIGSTNQKKQYQRLENNIF 132 + +Q + + Q + + ID+ K D + + + + Sbjct: 69 VVTPFSDIKKELDQIINQHNMQENVSVVIDKKGVKVEFSDFSLYDSGSAAIRPQALPVLN 128 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 ++ +S K L D+ ST+ S + + K + +K++L Sbjct: 129 EVTKVIESSVHKTHLVEVEGHTDDVPISTEKFPSNWELSAARASNVVKYLLGKGVKKEQL 188 Query: 193 Q 193 + Sbjct: 189 K 189 >gi|150390475|ref|YP_001320524.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950337|gb|ABR48865.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF] Length = 243 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 87/206 (42%), Gaps = 18/206 (8%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 ++ + + + S + + L L+ + + + ++LQ++ + + Sbjct: 42 QAVMQSFQGSLGVLDSGKTIEDSDYITEAMLEELTTNEQVEWEDFRKLQEIVE------N 95 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--- 261 L + + +L G+++ D +FD + + +L+ + L Sbjct: 96 YLDENGLASDILVLLESRGLILRFHDN---ILFDSGRAELKSRPMEILKDLAGFLDGEEF 152 Query: 262 STEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHH 318 + I + GHTD P R + NW LS+ RA + + L +GV+ +R S +G+ + Sbjct: 153 QNKHIRVEGHTDTDPLRVTSKYETNWELSVARASNVVRFLIEDAGVTPERFSA-AGYGEY 211 Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342 R A+D + NRR+D+++ + Sbjct: 212 RPLAANDTIENKAINRRVDVVILRSE 237 >gi|257871284|ref|ZP_05650937.1| flagellar motor protein MotB [Enterococcus gallinarum EG2] gi|257805448|gb|EEV34270.1| flagellar motor protein MotB [Enterococcus gallinarum EG2] Length = 254 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 8/180 (4%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 N + ++ + +++ + Q L K L + + G+ I+ Sbjct: 75 NTGKKAPTSTEAQAQEASVRTQLENQQLQKISDQLSQELASSGLKDQTEVRLESDGLHIT 134 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIAR--DN 284 + ++ +F S+ T L + + L T I I GHTD P + R N Sbjct: 135 L---ASSILFTSGSAEITATTRQSLDLLSDSLKKLKTNKIVIAGHTDNVPEKGNGRYQSN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 W LS RA + + + G ++ + I FA K ++ S NRR++++++ + Sbjct: 192 WDLSSARAINVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSENRRVEMIIQRTE 251 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 2/125 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K+K + +W + Y+D +T+L+A F+VM+ + DD+ + I F + Sbjct: 1 MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIRSEFGTILSSH 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 ++S I + E ++ K S + + SV ++ + +K +L + Sbjct: 59 HSSSSVIGSVIDMGETNTGKKAPTSTEAQAQEASVRTQLENQQLQKISDQLSQELASSGL 118 Query: 137 SQQSE 141 Q+E Sbjct: 119 KDQTE 123 >gi|307825895|ref|ZP_07656110.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307733014|gb|EFO03876.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 313 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 103/310 (33%), Gaps = 33/310 (10%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + Y D +++ + + ++ + + ++A N P+ Sbjct: 30 WLLTYLDVFVLIVMLVITLITVSGINTERQQAAA---------------------NKPQV 68 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 K +I + ++ + + ++ I + + N+ T E Sbjct: 69 IKPKKAPAAICPPVATSTTINTP--SPVVVENDPIKPIILTEHKVEINPDSSNAKTEPIE 126 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + E + E S A +L ++++ + + Sbjct: 127 SNSIAHTTNAPEIKVATETATNSIATSTNSKQAAANLTEETELQQQLTKAIDEF---GLN 183 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K V + + + I D +F S + +L+++ +L S +I I GHT Sbjct: 184 KAVNIKVNQGYAQLEIQD---KVLFKSSEADLTASGGALLKRLMPLLKQSVGLILIEGHT 240 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 D P + NW L RA S L+ + R+ I+ +A + Sbjct: 241 DNIPIKTAQFPSNWELGASRATSVLHFLVLQQLDSSRLRAIT-YADTMPIADNSTPEGKE 299 Query: 330 ANRRIDILVE 339 NRR++IL++ Sbjct: 300 KNRRVNILIK 309 >gi|86134567|ref|ZP_01053149.1| OmpA family protein [Polaribacter sp. MED152] gi|85821430|gb|EAQ42577.1| OmpA family protein [Polaribacter sp. MED152] Length = 283 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 10/245 (4%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 +EH LK+ ++ QK ++ + + + S+Q ++ + ++ ++L T Sbjct: 30 EEHAQAKDELLKVETSLQKCLIEKEKQDTKVFALSEQVKYLQEDKKTALKQVENLTVLTQ 89 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV-KGVLFETTR 221 K L K K + L I L+ +AD I K + + Sbjct: 90 SSSDNIKNVISQLSEKDKYINGVRKAMTQKDSLNLAIKYHLTRNLADGIQDKDIEVNVEK 149 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF-RN 279 T + ISI D +F S VL KI +V+ + + I GHTD +P R+ Sbjct: 150 TVVFISISD---KLLFKSGSYNVTENAYTVLDKIAKVIKDQPKMEVMIEGHTDTTPIKRD 206 Query: 280 IARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + +DNW LS RA S ++L K GV +R+ +G + + +D + NRR I Sbjct: 207 LIQDNWDLSALRATSITRILQYKFGVKPERLIA-AGRSQYIPLAPNDTAENKAKNRRTKI 265 Query: 337 LVEDR 341 ++ + Sbjct: 266 IIMPK 270 >gi|313682225|ref|YP_004059963.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994] gi|313155085|gb|ADR33763.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994] Length = 283 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 11/220 (5%) Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + E Y + + K L + +K + +T +E + + K Sbjct: 55 RNQEEIERYNKEINELKTKKQELEAEYQKLQASLNTTRMELAEKQSMLNLTEKQLKTLRQ 114 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ ++ + L ++ + ++I++ +F + Sbjct: 115 IEAETQKRNEIYARFVGKLQKMID---AGKLTVSIENGRLVINL---PENVLFPTGRTTL 168 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 L++I +VL E I GHTD P N NW LS RA +++ Sbjct: 169 NAGGSETLKEIADVLKELPERRFQIEGHTDTVPIHNDRFASNWELSSGRALRVVHLMIDE 228 Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 GV IS +G+ + + ++ + NRRI+I++ Sbjct: 229 GVQPANISA-AGYGEFQPRADNNTTEGKALNRRIEIVMLP 267 >gi|254719715|ref|ZP_05181526.1| hypothetical protein Bru83_09258 [Brucella sp. 83/13] gi|265984730|ref|ZP_06097465.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13] gi|306837825|ref|ZP_07470687.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653] gi|306841432|ref|ZP_07474134.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2] gi|264663322|gb|EEZ33583.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13] gi|306288538|gb|EFM59890.1| Hypothetical protein BIBO2_1217 [Brucella sp. BO2] gi|306407064|gb|EFM63281.1| Hypothetical protein BROD_0631 [Brucella sp. NF 2653] Length = 343 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ +D + NRRI++ + +R Sbjct: 318 YQPLDTADTADARARNRRIELKLTER 343 >gi|303248961|ref|ZP_07335208.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489684|gb|EFL49620.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 261 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 9/183 (4%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + +++ K+ K + A++ +++ Q+L + ++ L + + + Sbjct: 35 PEALENLTKQLFRSKADERKAEARAVELERKTQELQTAYDALVADLRGEVDSRDIRVRQF 94 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 R + I+ +D +F S+ P +L+K+G VLA + I + GHTD++P + Sbjct: 95 REKLEINFVD---KILFASGSAEITPRGREILRKVGGVLAKVKDKSIYVVGHTDSNPIHS 151 Query: 280 I-ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 NW LS R+ S + L GV+ +R + + G A ++ ++ NRR+D Sbjct: 152 ALYPSNWELSTARSASVIRFLSESGGVTPERFTAM-GRAFYQPVASNATPEGRHENRRVD 210 Query: 336 ILV 338 I+V Sbjct: 211 IIV 213 >gi|171318547|ref|ZP_02907697.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MEX-5] gi|171096248|gb|EDT41156.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MEX-5] Length = 460 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 109/321 (33%), Gaps = 28/321 (8%) Query: 28 NNLGSW-----KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 G+W + + FF ++ ++ A+E Y+ + + Sbjct: 153 GGGGAWSSRSLLVTFHGEAAGGERFFTILHRLSQDGAANLDALELYYLILALGMEGRYRL 212 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + + ++ + + I + + + K +++ + Sbjct: 213 V-----DGGDAELARLRERLRQLIGRTRGAYERTLSPHWKGRGDRRPPPWHVRPLWWALA 267 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 S + D + ++ LP A R+ A K++ Sbjct: 268 GVASASSLLFVTLDYRLRSQALPVVSALRQARLPQGGGSPEPASVRQ-----YAPKLAVL 322 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ +A + + + T +I++ + +F S+ LP + V+++IG+ L Sbjct: 323 LAPEIAR---RTLQIDETADRAVITL---NSDGLFASGSARVLPSQVSVIRRIGDALRDV 376 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGVSEDRISKISGFAHHRL 320 + + GHTD P NW+LSLDRA S Q+L G+ +R G Sbjct: 377 PGRVIVVGHTDNQPPSPGKPSNWQLSLDRAGSVVQLLRDEAGGL--ERFLA-QGRGESEP 433 Query: 321 KIASD--PMNSANRRIDILVE 339 D + NRR+ I V Sbjct: 434 VAPDDSAADRARNRRVVITVL 454 >gi|172062063|ref|YP_001809715.1| hypothetical protein BamMC406_3023 [Burkholderia ambifaria MC40-6] gi|171994580|gb|ACB65499.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MC40-6] Length = 434 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K+RL +++ LS L+ + I +G++ T S++ R MF + LPE Sbjct: 285 KERLASAPQRLR--LSQLLRNEIARGLV--TVDEDDRRSVVVFRGDSMFASGKRVVLPEI 340 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307 +L K+ +A + + GHTD P R+ A DN LS RA Q+L + G + Sbjct: 341 EPILNKVASEVARVGGNVLVSGHTDNQPIRSAAFADNQVLSEKRAEFVAQILQRDGTPAE 400 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RI + G + A+ + NRR++I+V Sbjct: 401 RIRAV-GKGDTQPVGDNATAAGRALNRRVEIMV 432 >gi|257866373|ref|ZP_05646026.1| flagellar motor protein MotB [Enterococcus casseliflavus EC30] gi|257873111|ref|ZP_05652764.1| flagellar motor protein MotB [Enterococcus casseliflavus EC10] gi|257800331|gb|EEV29359.1| flagellar motor protein MotB [Enterococcus casseliflavus EC30] gi|257807275|gb|EEV36097.1| flagellar motor protein MotB [Enterococcus casseliflavus EC10] Length = 256 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 15/192 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ ++T +K+ E + ++ ++L+ ++ ++S L+ A + + Sbjct: 70 DMGETTPRKKAATSAEAQAQEAAVRTQL----ENQQLEKISDQLSQELA---ASGLKEQT 122 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274 G+ I++ ++ +F S+ T L + + L I I GHTD Sbjct: 123 EVRLESDGLHITL---ASSILFASGSAEITDTTRQSLDLLSDSLKKLKANKIVIAGHTDN 179 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P + R NW LS RA + + + G ++ + I FA K ++ S Sbjct: 180 VPEKGNGRYQSNWDLSSARAITVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSE 239 Query: 331 NRRIDILVEDRQ 342 NRR++++++ + Sbjct: 240 NRRVEMIIQRTE 251 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 2/125 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K+K + +W + Y+D +T+L+A F+VM+ + DD+ + I+ F + Sbjct: 1 MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIKSEFGTILSSH 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + S I + E + + K S + + +V ++ + +K +L + Sbjct: 59 HSNSSVIGSVIDMGETTPRKKAATSAEAQAQEAAVRTQLENQQLEKISDQLSQELAASGL 118 Query: 137 SQQSE 141 +Q+E Sbjct: 119 KEQTE 123 >gi|254700373|ref|ZP_05162201.1| hypothetical protein Bsuib55_05884 [Brucella suis bv. 5 str. 513] gi|261750869|ref|ZP_05994578.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513] gi|261740622|gb|EEY28548.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513] Length = 343 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADTRARNRRIELKLTER 343 >gi|313674311|ref|YP_004052307.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312941009|gb|ADR20199.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 315 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 120/303 (39%), Gaps = 17/303 (5%) Query: 48 FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER-SSQNKIDLSIDEHI 106 +++ + + M + + N E +Q + E + Sbjct: 10 LIILSSVACVTQKKYDELLAEKVKLDAEKMKLEDKVALKNNTIESLEAQLAEEQETLEQV 69 Query: 107 TKNSVDLKIGSTNQKKQYQRLEN--NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 K D + + ++QY+ L + + S+ + ++ N + + DL S Sbjct: 70 RKAYQDSQSSLDSLQQQYKTLNDYYDKLMSSSGKLNKDLANKEKQLLQMEADLEISKQRN 129 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + +++ + + ++ + L +K+S L +++ E + Sbjct: 130 DELAANLAEREERVAELEKVLADKEAAVNALKQKVSEALLNFKENDL----TVEVKNGKV 185 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIAR- 282 +S+ +Q +F+ S++ + + L+K+ +VL + I + GHTD P + Sbjct: 186 YVSLAEQ---LLFNSGSTVVDTKGVEALKKLAQVLKDNQDVNIVVEGHTDDVPISGNNKY 242 Query: 283 --DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 DNW LS+ RA S ++L +G S +R++ +G K ++D NRR +I++ Sbjct: 243 LKDNWDLSVLRATSIVRILTNNGASPERVTA-AGKGEFAPKSSNDSAEGRRENRRTEIIL 301 Query: 339 EDR 341 + Sbjct: 302 TPK 304 >gi|269836612|ref|YP_003318840.1| OmpA/MotB domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785875|gb|ACZ38018.1| OmpA/MotB domain protein [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 12/173 (6%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISII 229 + P LA + + + LA I + ++ LV D + E T+ GI+I + Sbjct: 60 DVMEPGQPLGPALAEQDFRFMSFLA--IRAQIASLVQRYDLGLDAADVELTQEGIVIHL- 116 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLS 288 + +F PE VL I ++ + + GHTD P N DNW LS Sbjct: 117 --AESVLFPPGEVQLRPEAHRVLADIAAIIGPMPFPVRVEGHTDNVPPANPNYPDNWALS 174 Query: 289 LDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S + L GV +R+ + G+A HR + + NRR+D+++ Sbjct: 175 TMRAVSTVRFLSDVQGVPAERLVAV-GYAEHRPRADNRTLEGRRKNRRVDLVI 226 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 + ++ + W + YAD +T+L+ FF+VM+ I+ D + Sbjct: 1 MARRRHEHAGEASSERWLVTYADLITLLLVFFVVMYSISKADSAKFQRFS 50 >gi|229098968|ref|ZP_04229903.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] gi|229117997|ref|ZP_04247357.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228665446|gb|EEL20928.1| OmpA/MotB domain protein [Bacillus cereus Rock1-3] gi|228684466|gb|EEL38409.1| OmpA/MotB domain protein [Bacillus cereus Rock3-29] Length = 233 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 +Q S K+ + N K+ A +++ + +L Sbjct: 24 KQMAVAFRSELAGGTGNKEFLSDQKPNEEKELSANSLESEQIKKNAEAEVKQQEMNELKA 83 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + T G++++I++ +FD + E++ + +++ Sbjct: 84 VQKGIDKYIEEKQLSSSFKTDLTEKGLMVTILEN---VLFDSGKADVKLESLGIAKEMSN 140 Query: 258 VL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISG 314 +L + S I++ GHTD P N NW LS RA + QVL+++ + + S I G Sbjct: 141 LLVSASPREITVSGHTDTVPIANAQFASNWELSTQRAVNFMQVLLQNKDLQPGKFSAI-G 199 Query: 315 FAHHRLKIASDP--MNSANRRIDILVED 340 + +R +D + NRR+++ + Sbjct: 200 YGEYRSIAQNDTPEGKAKNRRVEVFILP 227 >gi|49187402|ref|YP_030654.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str. Sterne] gi|227817292|ref|YP_002817301.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684] gi|254736614|ref|ZP_05194320.1| chemotaxis protein MotB [Bacillus anthracis str. Western North America USA6153] gi|254741652|ref|ZP_05199339.1| chemotaxis protein MotB [Bacillus anthracis str. Kruger B] gi|49181329|gb|AAT56705.1| chemotaxis protein motB, C-terminus [Bacillus anthracis str. Sterne] gi|227002900|gb|ACP12643.1| chemotaxis protein MotB [Bacillus anthracis str. CDC 684] Length = 156 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 12/155 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L+ L KKI ++ + + T G++++I++ +FD + E++ Sbjct: 3 ELKALQKKIDQYINE---KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLG 56 Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSED 307 + +++ +L + S I++ GHTD P N NW LS RA + QVL+++ + + Sbjct: 57 IAKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPE 116 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 + S I G+ +R +D + NRR+++ + Sbjct: 117 KFSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 150 >gi|289208253|ref|YP_003460319.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943884|gb|ADC71583.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 272 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 76/205 (37%), Gaps = 7/205 (3%) Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 ++ S D + ++ L + + + D + ++ Sbjct: 69 DPRDDRPLASAAQPIQLAHPDRQALLDPLVAPLTGNLGDLEGRLHEPLPEVDDPDLEGTA 128 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 T + + + +GV + I D+ +F + PE ++L ++ +L Sbjct: 129 TTASRMREQAPQGVEVVEHPGRTELRIQDE---ILFASGQADLQPEGRMLLAQLEPLLDE 185 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +I++ GHTD P NW LS RA + L+ G+ +R+ + G A + Sbjct: 186 HDGLITVEGHTDNIPIATERFPSNWELSSARASGVVRYLLDQGLEAERLRAV-GRADTQP 244 Query: 321 KIASDPMNSA--NRRIDILVEDRQG 343 ++D NRR+ +++E Sbjct: 245 VASNDTARGRSENRRVALILESPTA 269 >gi|302343737|ref|YP_003808266.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301640350|gb|ADK85672.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 245 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 11/181 (6%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 + + + K+ L ++ + S +A ++ +G+ G Sbjct: 66 QPGVQAHRRIMEQLETATPADLDLAKQELAEMMELPSGQTD--LAGSLQQGLQVRQEPRG 123 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP--FRNIA 281 +I++ N +F + P+ + ++KI VLAH + IS+ GHTDAS + Sbjct: 124 TVITL---ANDLLFAPGKAELSPQAVESIKKIASVLAHGSANISVEGHTDASAPGAGSGF 180 Query: 282 RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 DNW LSL RA++ L+ G+ DR+ +++ R + +D + NRR +I+V Sbjct: 181 GDNWSLSLARAHAVLLRLIDPGGLKPDRL-RLAALGDSRPLVPNDTPQRRAMNRRTEIVV 239 Query: 339 E 339 Sbjct: 240 L 240 Score = 36.4 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 KKK + P W ++D +T+L+ FF+++ + + KA Sbjct: 4 KKKQEVGFDPLG---WMFTFSDLVTLLLTFFVMLLAMKQPEVLKFKA 47 >gi|15596658|ref|NP_250152.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAO1] gi|107100895|ref|ZP_01364813.1| hypothetical protein PaerPA_01001925 [Pseudomonas aeruginosa PACS2] gi|116049406|ref|YP_791791.1| flagellar motor protein MotD [Pseudomonas aeruginosa UCBPP-PA14] gi|254234559|ref|ZP_04927882.1| MotD [Pseudomonas aeruginosa C3719] gi|254239810|ref|ZP_04933132.1| MotD [Pseudomonas aeruginosa 2192] gi|313106460|ref|ZP_07792691.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016] gi|9947413|gb|AAG04850.1|AE004575_9 MotD [Pseudomonas aeruginosa PAO1] gi|3721573|dbj|BAA33552.1| ORF2 [Pseudomonas aeruginosa] gi|115584627|gb|ABJ10642.1| chemotaxis protein, MotD [Pseudomonas aeruginosa UCBPP-PA14] gi|126166490|gb|EAZ52001.1| MotD [Pseudomonas aeruginosa C3719] gi|126193188|gb|EAZ57251.1| MotD [Pseudomonas aeruginosa 2192] gi|310879193|gb|EFQ37787.1| chemotaxis protein, MotD [Pseudomonas aeruginosa 39016] Length = 296 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 +LT + K + + + ++ L+ +A + Sbjct: 50 SETLTGVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDAF 109 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L+A + + + I I ++ +F ++P +++K+ ++LA Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163 Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321 I + G TD P + NW LS RA S ++L GV R++ + G+ + Sbjct: 164 NPIHVEGFTDDVPIHSPRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222 Query: 322 -IASDPMNSANRRIDILV 338 AS + NRR+ +++ Sbjct: 223 DNASAEGRAKNRRVVLVI 240 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ + N W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 1 MQRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + K I P + + + S D + + Sbjct: 61 DRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDA 108 >gi|218892666|ref|YP_002441535.1| flagellar motor protein MotD [Pseudomonas aeruginosa LESB58] gi|218772894|emb|CAW28706.1| MotD [Pseudomonas aeruginosa LESB58] Length = 296 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 +LT + K + + + ++ L+ +A + Sbjct: 50 SETLTGVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDAF 109 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L+A + + + I I ++ +F ++P +++K+ ++LA Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163 Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321 I + G TD P + NW LS RA S ++L GV R++ + G+ + Sbjct: 164 NPIHVEGFTDDVPIHSPRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222 Query: 322 -IASDPMNSANRRIDILV 338 AS + NRR+ +++ Sbjct: 223 DNASAEGRAKNRRVVLVI 240 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ + N W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 1 MQRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + K I P + + + S D + + Sbjct: 61 DRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDA 108 >gi|118581755|ref|YP_903005.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504465|gb|ABL00948.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379] Length = 266 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 93/247 (37%), Gaps = 11/247 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + V+ + + +R + + ++ ++E + + + + K+ Sbjct: 23 VAQSTYLKKVEEAEYLSREFADLKRGQEQLTAENSGLKTELADQARQKQALEQLLASKTD 82 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 L +++N + + L R+++ L L L ++ V+ + Sbjct: 83 TLSQNVNDLRQKIAALEDENRELRKAREEKTSQLGTTYEKLLQNLKSEIAQGQVVISELK 142 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280 + +++ +FD PE ++L K+ E L + + I + GHTD Sbjct: 143 GALTVTM---EAAILFDSGRVDVKPEGQLILFKLVETLKANRDRAIRVEGHTDNLAPSGA 199 Query: 281 ----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 NW LS RA + + L + GV +S ++ +R + + NRRI Sbjct: 200 LSRLFPSNWELSGARAVNVARYLQRQGVDPSLLSAVAC-GEYRPVADNATREGRARNRRI 258 Query: 335 DILVEDR 341 +I + R Sbjct: 259 EITLVAR 265 >gi|302343053|ref|YP_003807582.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301639666|gb|ADK84988.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 247 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 10/242 (4%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + ++ I K S + + ++N + + + + G Sbjct: 1 MPPEKKIKKGSPPWMATFADLSTLLLTFFVLLLSMANMDVQKFREMLGSVQAAFGVQYEV 60 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFE 218 D + + + + ++ ++++S + V + + V Sbjct: 61 QGDFQPVAVPTAAPSAQNAAAPSRRISEARAAME--SRQMSEQVQNFVNETGLGSEVNVN 118 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+ + + + F+ + E +L+ I +V +++ GHTD P Sbjct: 119 AGNKGVRLRV---KGHLFFEPGGAEIRQEAKKLLEGIAKVTKKFDFYLTVEGHTDDQPIS 175 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 NW LS RA + + L GV E R+S I G+A A+ + + NRR++ Sbjct: 176 TPRFPSNWELSAARAAAVLRYLAGDGVPEKRMSAI-GYASSFPIAANTSEAGRNKNRRVE 234 Query: 336 IL 337 + Sbjct: 235 FV 236 >gi|254694373|ref|ZP_05156201.1| hypothetical protein Babob3T_06882 [Brucella abortus bv. 3 str. Tulya] gi|261214683|ref|ZP_05928964.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260916290|gb|EEX83151.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 343 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNPEIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343 >gi|91204077|emb|CAJ71730.1| similar to flagellar motor protein B [Candidatus Kuenenia stuttgartiensis] Length = 215 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 12/187 (6%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + N++ + L L +E R + ++ ++ L + G + + + Sbjct: 33 RVENQQLSQSLASLQQENANLSATASRYESELNRLENSRRDLESKLAGTGAITKIKDGSV 92 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEV-ISIRGHTDASPF---RN 279 I + D +FD + ++ L+KI +L + + I GHTD+ P ++ Sbjct: 93 SIVLPDS---ILFDPGQTKLREQSKATLKKIAGILKTDISNEMVRIEGHTDSDPIQKQKD 149 Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 NW LS RA S L+ G+S R+ ++GF + + + NRR++ Sbjct: 150 KYPSNWELSTARANSVLHYLVDECGISPTRVY-VAGFGQFQPISDNKTKAGKAQNRRVEF 208 Query: 337 LVEDRQG 343 ++ G Sbjct: 209 VIISGGG 215 >gi|330502789|ref|YP_004379658.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01] gi|328917075|gb|AEB57906.1| flagellar motor protein MotD [Pseudomonas mendocina NK-01] Length = 269 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 10/172 (5%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 EE + LQ +A + L+ + I I + Sbjct: 70 EERPRTSEPDNTSMDDPSSDSTLQSIASSVREAFGDLIQ---SDQLTVRGNEMWIEIELS 126 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLS 288 ++ +F +IP + +++K+ ++LA + + G TD P + NW LS Sbjct: 127 ---SSLLFPSGDAIPNNQAFDIIEKVAKILAPYQNPVKVEGFTDNLPIQTAQYPTNWELS 183 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RA S ++L GV R++ + G+ + A+ NRR+ +++ Sbjct: 184 TARASSIVRMLAMDGVDPSRLAAV-GYGEFQPVADNATAEGRGRNRRVVLVI 234 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 3 RRRQHEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSESLTGVFNQPD 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + K I + P S + S+D+ + +++ S + + + N Sbjct: 61 RSIKPIPVGEERPRTSE--PDNTSMDDPSSDSTLQSIASSVREAFGDLIQSDQLTVRGNE 118 Query: 138 QQSE-HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 E +SL S ++ D+ + + K + P+ E Sbjct: 119 MWIEIELSSSLLFPSGDAIPNNQAFDIIEKVAKILAPYQNPVKVE 163 >gi|306844705|ref|ZP_07477290.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1] gi|306274877|gb|EFM56647.1| Hypothetical protein BIBO1_1384 [Brucella sp. BO1] Length = 343 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLNAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343 >gi|302341787|ref|YP_003806316.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301638400|gb|ADK83722.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 354 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 109/339 (32%), Gaps = 33/339 (9%) Query: 4 HGDKNQENDQFIIIKKKV--AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT 61 + N + I+ ++ A S+ + +D M +L+ FF++++ ++ Sbjct: 37 RANANAADSDTIVRRRLRPLARFAQGEESPSFYLSLSDLMCLLLVFFVLIYSLS------ 90 Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 + D+ P ++++ + + I + + Sbjct: 91 -----------------GHEKPTDQPGPAQQAAVEIAEPAEPAQIASAPAAPGLPNAQAA 133 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 + + + + + + + L++++ + + Sbjct: 134 PDDLSRAALALASAGQSDPALADQPAPQPTPEPQPVDRGVTLDRALLTMVSASTATPADA 193 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 L D + + A +G+ + ++I + FD Sbjct: 194 VATEENSLDSLLDQLRAAAGEGMPGAAGQPAEGLQITSAEGRLVIRL---PENITFDLGQ 250 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299 ++ P L ++ V+ + + + + GHTD P NW LS RA + + L Sbjct: 251 ALLKPVMAETLGRLAPVVLRNPQCQVIVTGHTDDLPISTAQFASNWELSAARAAAVARAL 310 Query: 300 MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 GV R+ I G A + +D NRR++I Sbjct: 311 TAHGVPAGRLH-IRGMADQSPLLPNDSPENRQQNRRVEI 348 >gi|89893041|ref|YP_516528.1| hypothetical protein DSY0295 [Desulfitobacterium hafniense Y51] gi|89332489|dbj|BAE82084.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 264 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 12/175 (6%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + S + + + D+ KI + +N+ + T ++ISI D Sbjct: 84 DPVTTETDSLLAAARAREDRDMSDMKAKIDQYIKE---NNLSAQLETRITEEMLMISIRD 140 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLS 288 +FD S++ E + I ++L + + GHTD P NW LS Sbjct: 141 ---YALFDSGSALVKTEAQKLAYIISDILRQYPGYNVEVAGHTDNLPINTAEFPTNWDLS 197 Query: 289 LDRA-YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 R+ +L G+ + R I G+ + + + + NRR+++ + Sbjct: 198 SRRSLNFMKYLLQSDGLDQSRFRSI-GYGEFQPIATNTTEEGRAKNRRVEVNILR 251 >gi|17986607|ref|NP_539241.1| hypothetical protein BMEI0324 [Brucella melitensis bv. 1 str. 16M] gi|62290586|ref|YP_222379.1| hypothetical protein BruAb1_1699 [Brucella abortus bv. 1 str. 9-941] gi|82700502|ref|YP_415076.1| hypothetical protein BAB1_1726 [Brucella melitensis biovar Abortus 2308] gi|163845293|ref|YP_001622948.1| hypothetical protein BSUIS_B1189 [Brucella suis ATCC 23445] gi|189024803|ref|YP_001935571.1| hypothetical protein BAbS19_I16130 [Brucella abortus S19] gi|225853169|ref|YP_002733402.1| hypothetical protein BMEA_A1766 [Brucella melitensis ATCC 23457] gi|237816090|ref|ZP_04595086.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254689881|ref|ZP_05153135.1| hypothetical protein Babob68_06877 [Brucella abortus bv. 6 str. 870] gi|254698031|ref|ZP_05159859.1| hypothetical protein Babob28_10068 [Brucella abortus bv. 2 str. 86/8/59] gi|254730915|ref|ZP_05189493.1| hypothetical protein Babob42_06907 [Brucella abortus bv. 4 str. 292] gi|256045322|ref|ZP_05448216.1| hypothetical protein Bmelb1R_12582 [Brucella melitensis bv. 1 str. Rev.1] gi|256061749|ref|ZP_05451886.1| hypothetical protein Bneo5_15516 [Brucella neotomae 5K33] gi|256114280|ref|ZP_05455025.1| hypothetical protein Bmelb3E_15803 [Brucella melitensis bv. 3 str. Ether] gi|256258134|ref|ZP_05463670.1| hypothetical protein Babob9C_12474 [Brucella abortus bv. 9 str. C68] gi|256263341|ref|ZP_05465873.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370121|ref|YP_003107632.1| flagellar motor protein [Brucella microti CCM 4915] gi|260547172|ref|ZP_05822910.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260565786|ref|ZP_05836269.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260755413|ref|ZP_05867761.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758635|ref|ZP_05870983.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762467|ref|ZP_05874804.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884428|ref|ZP_05896042.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261325753|ref|ZP_05964950.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33] gi|265991747|ref|ZP_06104304.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995585|ref|ZP_06108142.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|297248983|ref|ZP_06932691.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] gi|17982219|gb|AAL51505.1| chemotaxis motb protein [Brucella melitensis bv. 1 str. 16M] gi|62196718|gb|AAX75018.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941] gi|82616603|emb|CAJ11682.1| OmpA/MotB domain [Brucella melitensis biovar Abortus 2308] gi|163676016|gb|ABY40126.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020375|gb|ACD73097.1| OmpA/MotB domain protein [Brucella abortus S19] gi|225641534|gb|ACO01448.1| OmpA/MotB domain protein [Brucella melitensis ATCC 23457] gi|237788753|gb|EEP62965.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|256000284|gb|ACU48683.1| flagellar motor protein [Brucella microti CCM 4915] gi|260095537|gb|EEW79415.1| OmpA/MotB domain-containing protein [Brucella abortus NCTC 8038] gi|260151159|gb|EEW86254.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260668953|gb|EEX55893.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672893|gb|EEX59714.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675521|gb|EEX62342.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873956|gb|EEX81025.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261301733|gb|EEY05230.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33] gi|262766869|gb|EEZ12487.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002703|gb|EEZ15106.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093340|gb|EEZ17409.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|297174116|gb|EFH33473.1| chemotaxis protein MotB [Brucella abortus bv. 5 str. B3196] gi|326409725|gb|ADZ66790.1| OmpA/MotB domain protein [Brucella melitensis M28] gi|326539433|gb|ADZ87648.1| OmpA/MotB domain protein [Brucella melitensis M5-90] Length = 343 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343 >gi|325567537|ref|ZP_08144204.1| flagellar motor protein B [Enterococcus casseliflavus ATCC 12755] gi|325158970|gb|EGC71116.1| flagellar motor protein B [Enterococcus casseliflavus ATCC 12755] Length = 256 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 15/192 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ ++T +K+ E + ++ ++L+ ++ ++S L+ A + Sbjct: 70 DMGETTPRKKAATSAEAQAQEAAVRTQL----ENQQLEKISDQLSQELA---ASGLKDQT 122 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274 G+ I++ ++ +F S+ T L + + L I I GHTD Sbjct: 123 EVRLESDGLHITL---ASSILFASGSAEITDTTRQSLDLLSDSLKKLKANKIVIAGHTDN 179 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P + R NW LS RA + + + G ++ + I FA K ++ S Sbjct: 180 VPEKGNGRYQSNWDLSSARAITVMEYFISKGAVLEKNAAIQAFADTEPKADNNTPQGRSE 239 Query: 331 NRRIDILVEDRQ 342 NRR++++++ + Sbjct: 240 NRRVEMIIQRTE 251 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K+K + +W + Y+D +T+L+A F+VM+ + DD+ + I F + Sbjct: 1 MKRKKK--HEEHVDEAWLLPYSDMLTLLLALFIVMFAMAKVDDEKFQEIRSEFGTILSSH 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + I + E + + K S + + +V ++ + +K +L + Sbjct: 59 HSNASVIGSVIDMGETTPRKKAATSAEAQAQEAAVRTQLENQQLEKISDQLSQELAASGL 118 Query: 137 SQQSE 141 Q+E Sbjct: 119 KDQTE 123 >gi|23502572|ref|NP_698699.1| hypothetical protein BR1714 [Brucella suis 1330] gi|161619642|ref|YP_001593529.1| hypothetical protein BCAN_A1752 [Brucella canis ATCC 23365] gi|254703491|ref|ZP_05165319.1| hypothetical protein Bsuib36_06117 [Brucella suis bv. 3 str. 686] gi|260568797|ref|ZP_05839265.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261754122|ref|ZP_05997831.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686] gi|23348573|gb|AAN30614.1| OmpA family protein [Brucella suis 1330] gi|161336453|gb|ABX62758.1| OmpA/MotB domain protein [Brucella canis ATCC 23365] gi|260154181|gb|EEW89263.1| OmpA/MotB domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743875|gb|EEY31801.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686] Length = 343 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEIKKLADAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343 >gi|75676928|ref|YP_319349.1| hypothetical protein Nwi_2744 [Nitrobacter winogradskyi Nb-255] gi|74421798|gb|ABA05997.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 342 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 109/325 (33%), Gaps = 21/325 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D ++ L+ + + + + + L + D + + + Sbjct: 19 FVDALSTLVLAIVFLLTVFLVTQFFLSQEVTGKDKALEQLNARIAQLTDLLSLEKLGKVS 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D S + + N +SQ ++ + S Sbjct: 79 LGDEVSQLRAGLASAEAERDRIKGLYDGLAGAGNDAAGRDSQLNKALDSEKQISSRALAQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + T ++ ++ L + + + R+ DL ++++ L+ V + Sbjct: 139 VEVLTQQISALRRQLAALENALDASEKKDKESQNRIADLGQRLNVALAKRVQELSRYRSE 198 Query: 217 FETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266 F IL I I+ ++ FD + + LPE L K+ L + I Sbjct: 199 FFGRLRAILGNRPDIRIVGDRFVFQSEVFFDTAQATLLPEGKAELDKVAGALTDLDKQIP 258 Query: 267 -------SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + GHTD P ++ + + NW LS RA S Q L GV R+ +GF Sbjct: 259 SEIAWVLRVDGHTDVRPIKSPVFKSNWDLSAARAISVVQYLASLGVPPQRLVA-AGFGEF 317 Query: 319 RLKIASDPMNS--ANRRIDILVEDR 341 + + NRRI++ + +R Sbjct: 318 QPLDPDATEEAYKRNRRIELKLTER 342 >gi|254687000|ref|ZP_05150858.1| chemotaxis protein MotB [Bacillus anthracis str. CNEVA-9066] gi|254724563|ref|ZP_05186346.1| chemotaxis protein MotB [Bacillus anthracis str. A1055] gi|254754750|ref|ZP_05206785.1| chemotaxis protein MotB [Bacillus anthracis str. Vollum] gi|254757582|ref|ZP_05209609.1| chemotaxis protein MotB [Bacillus anthracis str. Australia 94] Length = 153 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ L KKI ++ + + T G++++I++ +FD + E++ + Sbjct: 1 MKALQKKIDQYINE---KQLSSSFQTKLTEKGLMVTILEN---VLFDSGKADVKLESLGI 54 Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDR 308 +++ +L + S I++ GHTD P N NW LS RA + QVL+++ + ++ Sbjct: 55 AKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEK 114 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 S I G+ +R +D + NRR+++ + Sbjct: 115 FSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 147 >gi|224369952|ref|YP_002604116.1| MotB2 [Desulfobacterium autotrophicum HRM2] gi|223692669|gb|ACN15952.1| MotB2 [Desulfobacterium autotrophicum HRM2] Length = 244 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 8/140 (5%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-E 264 +V + ++++I +FD S+ +L +I V+ Sbjct: 105 IVNREAPDTIKTHVLDGKVIVTI---NGQTLFDSGSANLKQGATAILDRIVAVVFEYPEY 161 Query: 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I+I+G+TD P NW LS RA + + L++ G++ R++ +G+A + Sbjct: 162 SINIKGYTDDIPIETAQFPSNWELSAIRATTVLKHLIQKGINPKRLTA-TGYADMEPLVP 220 Query: 324 S--DPMNSANRRIDILVEDR 341 + D + NRR++ ++E + Sbjct: 221 NTSDTNRAINRRVEFVLEKK 240 >gi|299822262|ref|ZP_07054148.1| chemotaxis protein MotB [Listeria grayi DSM 20601] gi|299815791|gb|EFI83029.1| chemotaxis protein MotB [Listeria grayi DSM 20601] Length = 265 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 13/224 (5%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 ++ E N K + +EK++ ++ SK K Sbjct: 41 DAKKFEQMGNAFKKIVDEGAAGNQAHVAKSKDPTNISADAIEKAMAAQDKQKSAAASK-K 99 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L + K +L+ KK+ S +S +++ + G+LI+I D +FD S+ Sbjct: 100 ALEKQNKMQLEAFKKKLDSYIST---EHLEAKLSTRYANDGLLITIRDD---ILFDSGSA 153 Query: 243 IPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299 + ++IG + + I GHTD P NW LS RA + + + Sbjct: 154 ELSASKRKIAKEIGMLFKQGDSKMEGIISGHTDDVPIHTATYKSNWELSAARAVNFMEAI 213 Query: 300 MKSGVS-EDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 + S + + G+ ++ +D NRR++I+V Sbjct: 214 ITENTSLDPGLFSARGYGEYKPVAKNDNAVDREKNRRVEIMVRP 257 >gi|206603127|gb|EDZ39607.1| Putative flagellar motor protein (OmpA/MotB) [Leptospirillum sp. Group II '5-way CG'] Length = 261 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 9/154 (5%) Query: 194 DLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + + + LV + KG + T+ GI++ I ++ +F + + + VL Sbjct: 82 QVQSVMIQAMQLLVQKSSEKGDMKVVQTKEGIVLRI---QSRFLFASGHARVRRKAVPVL 138 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY-QVLMKSGVSEDRIS 310 +KI +LA + I + G+TD P R NW LS RA + ++L + R+ Sbjct: 139 RKIAALLARTNHEIRVHGYTDNQPIRTSRYPSNWALSTMRAVNVLTRLLEYGSIDPGRMG 198 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 +GF R ++ NRR++IL+ +R+ Sbjct: 199 A-AGFGKFRPIASNLTPEGREKNRRVEILIMNRE 231 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 K + NL W + YADF+T+L AFF++++ I + + + + Sbjct: 3 KKPRHEEHENLERWLVSYADFITLLFAFFVMLYAIASVNTGKFRVLSN 50 >gi|209886430|ref|YP_002290287.1| flagellar motor protein [Oligotropha carboxidovorans OM5] gi|209874626|gb|ACI94422.1| flagellar motor protein [Oligotropha carboxidovorans OM5] Length = 337 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 59/336 (17%), Positives = 118/336 (35%), Gaps = 26/336 (7%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 L W + D ++ L+ + + + + + L + + Sbjct: 8 GGTGLNYWP-GFVDALSTLVLAIVFLLSVFLVVQFYLSQEVSGKDKALERLNAQIAQLTN 66 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + + SS D + + + + + N Q + + Sbjct: 67 LLSLEKVSSGTLNDQIAQLQASLATTEAERDRAKGMAESLTSGAAGGGDLNKQLATEKQI 126 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 S ++ + + L + + E K K + ++++ DL ++++ L+ Sbjct: 127 SERALAQVEVLNQQISALRRQLAALEEALNASEQKGK----ESQEKIADLGQRLNVALAQ 182 Query: 206 LVADNIVKGVLFETTRTGIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG 256 V + F IL I I+ ++ FD SS LPE L ++ Sbjct: 183 RVQELSRYRSEFFGRLRAILGDRPDIRIVGDRFVFQSEVFFDSGSSGLLPEGRGELDQLA 242 Query: 257 --------EVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 ++ A V+ + GHTD P + + NW LS RA S Q L+ GVS Sbjct: 243 TAITELEKKIPAEIPWVLRVDGHTDVRPINSPQFKSNWDLSAARAISVVQYLISRGVSPQ 302 Query: 308 RISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 R+ +GF + + ++ NRRI++ + +R Sbjct: 303 RLVA-AGFGEFQPLDTATTDDAYKRNRRIELKLTER 337 >gi|296390172|ref|ZP_06879647.1| flagellar motor protein MotD [Pseudomonas aeruginosa PAb1] Length = 296 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 10/198 (5%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 +LT + K + + + ++ L+ +A + Sbjct: 50 SETLTGVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASVDSLERIADSVRDAF 109 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L+A + + + I I ++ +F ++P +++K+ ++LA Sbjct: 110 GDLIASDQLS-----VRGNELWIEIT-LNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163 Query: 264 EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321 I + G TD P + NW LS RA S ++L GV R++ + G+ + Sbjct: 164 NPIHVEGFTDDVPIHSPRYPTNWELSAARAASIVRLLGNDGVEPSRMAAV-GYGEFQPVA 222 Query: 322 -IASDPMNSANRRIDILV 338 AS + NRR+ +++ Sbjct: 223 DNASAEGRAKNRRVVLVI 240 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ + N W + YADF+T+L AFF+VM+ I++ ++ K + + Sbjct: 1 MQRRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQP 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + K I P + + + SVD + + Sbjct: 61 DRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASVDSLERIADSVRDA 108 >gi|283853398|ref|ZP_06370644.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283571211|gb|EFC19225.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 301 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 61/331 (18%), Positives = 114/331 (34%), Gaps = 47/331 (14%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++K+ DD W I AD MT+L+ FFL++ ++ D + + Sbjct: 7 LRKRRPEDDD-----LWPISMADMMTLLLCFFLLLVAVSHVDLGRYERVADSMQKAMI-- 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 P + +S+ K + S + + + + + + Sbjct: 60 ------------PDKPASKPKAPEPQPAPPKAPAPQAAPKSPPPPPEPASVRSKVSHTTL 107 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + E E P KK L+D+ Sbjct: 108 ASDPVPPLEPEKPKPEAKPAEPAPPQAAAVPAGPEAERTGP----------TKKSLEDIR 157 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+++ L D V G+ +++ R FD +S+ + +L+ I Sbjct: 158 KELAGKL-----DITSGAVEILPRENGVELNL---RGAAFFDAASADIKSGGLPLLRDIA 209 Query: 257 EVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L+ + +++ GHTD P + + NW LS RA ++L+ GV + ++ G Sbjct: 210 ATLSGTPYRVTVEGHTDNRPIESWLYPSNWELSSARASRVARLLIDGGVPAGHM-RVEGL 268 Query: 316 AHHRLKIAS-DPMN-------SANRRIDILV 338 A + + DP + NRR+ ILV Sbjct: 269 ADTQPVAPNTDPAGRSIAENQARNRRVVILV 299 >gi|209964330|ref|YP_002297245.1| chemotaxis MotB protein [Rhodospirillum centenum SW] gi|209957796|gb|ACI98432.1| chemotaxis MotB protein [Rhodospirillum centenum SW] Length = 309 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 53/308 (17%), Positives = 90/308 (29%), Gaps = 50/308 (16%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I Y D +T+LM FL M I ++ P TA G Sbjct: 40 WVISYMDMVTLLMTVFLGMIAI--------LGMQGRLAPPEPGPETAG-GEAQTAAQAAE 90 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + + ++ + + + + ++ + Sbjct: 91 PVPPPARTVLADQTAPAALAPAPVTLAPSLPGPAPTVPMAGFPETGTAGEETSAAPATPD 150 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 S + E LPP Sbjct: 151 GPPPPPLSPAARAWLQALEAAGLPP----------------------------------- 175 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V F I I + D +F S+ VL ++ +LA I++ GHT Sbjct: 176 -DVGFTVEDRRIAIELRD---RVLFRSGSAALETAGTAVLDRLVPMLARMPGTITVEGHT 231 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 D NW LS RA + + L+ +GV R+ + +G A R + N Sbjct: 232 DPVAIATTRFPSNWELSAARAAAVVRHLVAAGVPAQRL-RATGLADSRPLTTDPARWAMN 290 Query: 332 RRIDILVE 339 RR++I+++ Sbjct: 291 RRVEIVID 298 >gi|126664984|ref|ZP_01735967.1| flagellar motor protein MotD [Marinobacter sp. ELB17] gi|126630354|gb|EBA00969.1| flagellar motor protein MotD [Marinobacter sp. ELB17] Length = 261 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 8/151 (5%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 PLS R + LQ+LA ++ S L+ + + + +++ N+ + Sbjct: 93 PLSLPAPDNASRSRALQELAGQLGQEFSALIEGGV---ISLNADDEWLQLNL---PNSLL 146 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F + P ++ V++KI VL + I I G TD R+ NW LS RA Sbjct: 147 FGSGDAEPHYDSFAVMEKIAGVLRDTDNAIRIEGFTDNQSIRSGRFPSNWELSAARASVL 206 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 ++L+ G+ R++ + G+ H+ +D Sbjct: 207 VRMLVMDGIDPARLAAV-GYGEHQPVARNDT 236 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 1/136 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ D ++ W I YADF+T+L AFF+VM+ +++ ++ K + N Sbjct: 1 MRRRKPPQDDFHHKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSNTLTGV-FNA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 S P ++ D I +T+ + L + + + Sbjct: 60 PERSVVPITVGEQPVAGGRSDTDAVIAPVVTEAPLSLPAPDNASRSRALQELAGQLGQEF 119 Query: 137 SQQSEHCKNSLTRDSE 152 S E SL D E Sbjct: 120 SALIEGGVISLNADDE 135 >gi|85714417|ref|ZP_01045405.1| flagellar motor protein [Nitrobacter sp. Nb-311A] gi|85698864|gb|EAQ36733.1| flagellar motor protein [Nitrobacter sp. Nb-311A] Length = 342 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 114/319 (35%), Gaps = 29/319 (9%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSI 102 +L F +V + ++ KA+EQ L + D + + + D Sbjct: 33 LLSVFLVVQFFLSQEVTGKDKALEQ--------LNARIAQLTDLLSLEKLGKVSLGDEVS 84 Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 S + + + N NSQ ++ + + + T Sbjct: 85 QLRAGLASAEAERDRIKGLYEGLAGAGNDAAGRNSQLNKALDSEKQISARALAQVEVLTQ 144 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++ ++ L + + + R+ DL ++++ L+ V + F Sbjct: 145 QISALRRQLAALEDALDASEKKDKESQNRIADLGQRLNVALAKRVQELSRYRSEFFGRLR 204 Query: 223 GIL-----ISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI------- 266 IL I I+ ++ F+ + +I LPE L KI L + I Sbjct: 205 AILGNRPDIRIVGDRFVFQSEVFFETAQAILLPEGKSELDKIANALTDLDKQIPSEIAWV 264 Query: 267 -SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + GHTD P + + + NW LS RA S Q L+ GV R+ +GF + Sbjct: 265 LRVDGHTDVRPINSPVFKSNWDLSAARAISVVQYLVSRGVPPQRLVA-AGFGEFQPLDPG 323 Query: 325 DPMNS--ANRRIDILVEDR 341 ++ NRRI++ + +R Sbjct: 324 TTDDAYKRNRRIELKLTER 342 >gi|242280858|ref|YP_002992987.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242123752|gb|ACS81448.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 250 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 11/197 (5%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 ++ ++ KG + + + F ++ K KK + L I + Sbjct: 51 NQDVANFETLKGSMRDAFGMQSQDKSGKHMAFSKSPHSASSVSAKAKKDMHALEVDIRAF 110 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 +S A + K + T + G+L+ + +F ++ P+ V+L K+ ++ Sbjct: 111 IS---AGKMEKLMAVNTDQQGVLVRV---PTRAIFKPGTAQINPKATVLLDKVASIMKKK 164 Query: 263 TEVISIRGHTDASPFRNIARD-NWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRL 320 + +RGHTD +N NW LS RA S +L KSGVS R+ + G+A + Sbjct: 165 DFNLVVRGHTDDRATKNNIYSSNWELSAARAASCLRYILKKSGVSSKRLKAV-GYAGTKP 223 Query: 321 KIAS--DPMNSANRRID 335 + + + + NRR++ Sbjct: 224 LVPNTSNRNRAINRRVE 240 >gi|257092877|ref|YP_003166518.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045401|gb|ACV34589.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 189 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +++ L K + L + V + + ++++D+ +F S+ Sbjct: 26 QEVQQVDTLSVQNKAYAQLTQQLQTEIQADQVKIKQLEGRLTVTLVDE---IVFSSGSAE 82 Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQV 298 + + KI L + + I + G+TD +P R+ NW LS RA + Sbjct: 83 MNMKGRATIDKIVGTLQNAAGKRIVVEGYTDNTPIGPGLRSRYPTNWELSTARACDVVRY 142 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +G+ R+ +GF ++ A+D S NRRIDI++ D Sbjct: 143 LQAAGIDPVRLEA-AGFGEYQPVAANDTPAGRSQNRRIDIVLMD 185 >gi|108757340|ref|YP_635150.1| putative chemotaxis MotB protein [Myxococcus xanthus DK 1622] gi|108461220|gb|ABF86405.1| putative chemotaxis MotB protein [Myxococcus xanthus DK 1622] Length = 295 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 15/222 (6%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 +E + S + + +D + + L+ EK K++L Sbjct: 41 SQAEALAEQSRQSALDAATRARDAEAARLQLEQKLAALEAERAQLATEKEQLSSEKEQLS 100 Query: 194 DLAKKISSTLSGLVA--DNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPL 245 ++ + L+ L A D++ + E I +S +D + +FD + Sbjct: 101 QTVQEQEAELAKLKATYDDLQDKMKAEIAEGAIRLSHAEGRIQVDLVDKVLFDSGDASIS 160 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASP----FRNIARDNWRLSLDRAYSAYQVLM 300 VL ++G VLA + I + GHTD SP ++ NW LS+ RA + + L Sbjct: 161 ARGQEVLTRLGSVLAKVEDKSIQVSGHTDDSPPSQKLQSTFPSNWELSVARAVNVVRFLQ 220 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 +G R +G+ R + + NRRI++L+ Sbjct: 221 DTGGVPARRLVAAGYGQMRPVSTNATPLGRARNRRIEVLLMP 262 >gi|228941688|ref|ZP_04104235.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228817900|gb|EEM63978.1| OmpA/MotB domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 153 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ L KKI ++ + + T G++++I++ +FD + E++ + Sbjct: 1 MKALQKKIDQYINE---KQLSSSFQTKLTEKGLMVTILEN---ILFDSGKADVKLESLGI 54 Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDR 308 +++ +L + S I++ GHTD P N NW LS RA + QVL+++ + ++ Sbjct: 55 AKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQRAVNFMQVLLQNKELQPEK 114 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 S I G+ +R +D + NRR+++ + Sbjct: 115 FSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 147 >gi|294850964|ref|ZP_06791640.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] gi|294821607|gb|EFG38603.1| chemotaxis protein MotB [Brucella sp. NVSL 07-0026] Length = 343 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 G L E I I+ ++ +F S+ P+ V ++K+ + + Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAKINPKGQVEMKKLADAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343 >gi|225628282|ref|ZP_03786316.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|254708420|ref|ZP_05170248.1| hypothetical protein BpinM_16075 [Brucella pinnipedialis M163/99/10] gi|254708727|ref|ZP_05170538.1| hypothetical protein BpinB_00411 [Brucella pinnipedialis B2/94] gi|254714572|ref|ZP_05176383.1| hypothetical protein BcetM6_14787 [Brucella ceti M644/93/1] gi|254717469|ref|ZP_05179280.1| hypothetical protein BcetM_13911 [Brucella ceti M13/05/1] gi|256030252|ref|ZP_05443866.1| hypothetical protein BpinM2_06326 [Brucella pinnipedialis M292/94/1] gi|256160427|ref|ZP_05458116.1| hypothetical protein BcetM4_15574 [Brucella ceti M490/95/1] gi|256255633|ref|ZP_05461169.1| hypothetical protein BcetB_15393 [Brucella ceti B1/94] gi|260167927|ref|ZP_05754738.1| hypothetical protein BruF5_06077 [Brucella sp. F5/99] gi|261219302|ref|ZP_05933583.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1] gi|261222836|ref|ZP_05937117.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94] gi|261315919|ref|ZP_05955116.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316219|ref|ZP_05955416.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94] gi|261322363|ref|ZP_05961560.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1] gi|261757366|ref|ZP_06001075.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|265987280|ref|ZP_06099837.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265998795|ref|ZP_06111352.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1] gi|225616128|gb|EEH13176.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|260921420|gb|EEX88073.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94] gi|260924391|gb|EEX90959.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1] gi|261295053|gb|EEX98549.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1] gi|261295442|gb|EEX98938.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94] gi|261304945|gb|EEY08442.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261737350|gb|EEY25346.1| OmpA/MotB domain-containing protein [Brucella sp. F5/99] gi|262553484|gb|EEZ09253.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1] gi|264659477|gb|EEZ29738.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 343 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 116/326 (35%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D +T L+ + + + + L + + + + +SQ+ Sbjct: 19 FVDALTTLLLAIMFLLTVFVLAQFLLSREVNNKDSVLARLNSQIQELTQLLSLERSNSQD 78 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + ++V+ + + ++ + Sbjct: 79 MQDTIANLQASLSTVESERSRLQSLLNEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQ 138 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK--- 213 + ++ ++ L+ + + ++ DL ++++ L+ V + Sbjct: 139 VELLNQQIAALRRQIAALEDALNASESRDRESNAKIADLGRRLNVALAQRVQELNRYRSD 198 Query: 214 --GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG--------EVL 259 G L E I I+ ++ +F S+ P+ V ++K+ E+ Sbjct: 199 FFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLANAIIQLNREIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 V+ + GHTD P R DNW LS RA + + L+ +GV +R+ +GF Sbjct: 259 DDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANRLVA-AGFGE 317 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ ++ + NRRI++ + +R Sbjct: 318 YQPLDTANTADARARNRRIELKLTER 343 >gi|239813534|ref|YP_002942444.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus S110] gi|239800111|gb|ACS17178.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus S110] Length = 442 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 +K L T S++ R F S+ P+ ++ VL++IG+ LA + I GH Sbjct: 301 IKQGLVTVTDEADR-SVVRLRGDSFFGSGSAEPMAASLPVLRRIGQALAEVKGEVLITGH 359 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +D P R++ NW LS RA + L V R+ + G A A+D Sbjct: 360 SDNQPIRSLRYPSNWHLSAARADAVKGALTTL-VEPARM-RSDGKADAEPVAANDTPANR 417 Query: 329 SANRRIDILVED 340 + NRR+DI++ Sbjct: 418 ARNRRVDIVLLS 429 >gi|226944839|ref|YP_002799912.1| flagellar motor protein [Azotobacter vinelandii DJ] gi|226719766|gb|ACO78937.1| Flagellar motor protein [Azotobacter vinelandii DJ] Length = 275 Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + E+S++ LP S A + + +D+ L GL D + K + Sbjct: 87 GQGNEERSLSPLSEGVLPAGSGLLEQAGRSLRDEKDV-DSTGDPLQGLPVDQLGKDIEVI 145 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 + I + +F + + + + VLQ++ VL S I + GHTD+ P R Sbjct: 146 VKEGTVSFRISSE---ILFSSAQADLSLDGLRVLQQLVPVLNSSRHDIVVVGHTDSLPIR 202 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 + NW LS RA S + L +GV+ R+ + G A R +S + NRR++ Sbjct: 203 STRFPSNWELSGARAGSVVRYLEANGVARQRMRAV-GLADTRPLLENSSPEGRAGNRRVE 261 Query: 336 ILVEDRQG 343 +++E Q Sbjct: 262 LILETPQA 269 >gi|242277509|ref|YP_002989638.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242120403|gb|ACS78099.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 241 Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 17/236 (7%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 +K E + + + D K D+ S+ +PP Sbjct: 8 KKPAQGGEEGGWALTLADMMTLLLCFFVLLLAIADVDQKKYKDVSDSLASAMGVDVPPKG 67 Query: 180 KEKILAMKRKKR--LQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 R + D + I + + + + I + + Sbjct: 68 ANDTYEGAPVARRVISDQQRNIFEMQLEMARLVGRESDALKIKMRPDSVAIVL---KGGF 124 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 F + VL KI LA S + + GH+D P R+ NW LS RA + Sbjct: 125 FFPSGQADLTSGARRVLGKIAPTLAKSPYQVVVEGHSDNIPIRSKQFPSNWELSSARASA 184 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILVEDRQ 342 + L+ +G S+DRI K+ G A ++ N NRR+ +LV + Sbjct: 185 VARYLLDNGFSKDRI-KVLGMADTAPAYPNEDDNGNAIPANQKRNRRVVLLVYPPK 239 >gi|260062810|ref|YP_003195890.1| putative flagellar motor protein MotB [Robiginitalea biformata HTCC2501] gi|88784378|gb|EAR15548.1| putative flagellar motor protein MotB [Robiginitalea biformata HTCC2501] Length = 287 Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 19/229 (8%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 TN + E N F +N+Q+ + +LT + KG + +LEKS+ + L Sbjct: 54 TNDARLQTLEEQNAFLKANNQELINNMGNLTTLTAKGAE-----NLEKSLESLKEKDLTI 108 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + L L + + L L ++ + + + +SI D +F Sbjct: 109 RKLQDAVTRRDSVNLA-LVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLF 160 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295 S VL K+ +V+ + + + GHTD P+R+ DNW LS RA S Sbjct: 161 SSGSYNVTNAAKNVLGKVAQVVNNKPDFEFMVEGHTDNVPYRSGVLLDNWDLSAKRATSV 220 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++L GV R++ +G +++ ++D + NRR I+V + Sbjct: 221 VRILQNDFGVDPARMTA-AGRSYYVPLASNDTAANRAKNRRTRIVVLPK 268 >gi|42528265|ref|NP_973363.1| flagellar motor protein MotB [Treponema denticola ATCC 35405] gi|4426946|gb|AAD20620.1| flagellar motor protein MotB [Treponema denticola] gi|41819535|gb|AAS13282.1| flagellar motor rotation protein B [Treponema denticola ATCC 35405] gi|325474545|gb|EGC77731.1| flagellar motor protein MotB [Treponema denticola F0402] Length = 239 Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 11/153 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQ 253 LA + +S + + + GI+IS+ F S+ E+ L Sbjct: 87 LASALKKAVSLFAPEIKTNKIAVTSDERGIVISLASD---VFFYPGSAELNIAESRDTLL 143 Query: 254 KIGEVLAH---STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + L+ ++ + GHTD+ N+ + NW LS RA + L G E R Sbjct: 144 NLAQFLSSQDLASYRFRVEGHTDSGVTDPNVWKSNWELSSARAINILHSLTDFGAQESRF 203 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340 ++G+A R ++D + NRR+DI++ D Sbjct: 204 -SVAGYADTRPIFSNDTAEGRAYNRRVDIIILD 235 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGKNLM 77 + W YAD +T+++ FF++++ + D A+ +P G L Sbjct: 3 RKKKHGPSAAGSGWLTTYADMVTLMLCFFVMLFEPSEVDVTQLMALSASISGDPTGGGLS 62 Query: 78 TASKGIFDEQN 88 ++ + D N Sbjct: 63 VSAGRLSDLGN 73 >gi|182680245|ref|YP_001834391.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636128|gb|ACB96902.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 345 Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 39/276 (14%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 EH K+ + + G + + + + + ++ + ++ D Sbjct: 71 EHAAKDKAEQETGQLKATLEAAQTAAKAEATRLQELVDAGNQATQSAEDRARLSLRALDA 130 Query: 164 EKSINKEENYFLPPLSKEKIL------------------AMKRKKRLQDLAKKISSTLSG 205 EK ++ + + L+++ + + ++ DL +++ L+ Sbjct: 131 EKQLSTQAEAQVETLNQQIAALRGQLSSLQETLSASETRDQESRAQIADLGSRLNVALAQ 190 Query: 206 LVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 V + ++ VL E I+ ++ +FD + P L + Sbjct: 191 KVQELAHYRSDFFGRLRQVLGERPDLRIVGDRFVFQSELLFDSGQARLNPIGRQELDTLA 250 Query: 257 EVLAHS--------TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 L V+ + GHTD +++ NW LS+ RA + L GV D Sbjct: 251 TALNDLVKTIPADLPWVMRVDGHTDKKQIKSVQFPSNWELSVARALAVVHYLTDKGVPPD 310 Query: 308 RISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 R++ +GF + D + NRRI++ + ++ Sbjct: 311 RLAA-AGFGSFQPLDPGDSEEALKRNRRIELKITEK 345 >gi|92119002|ref|YP_578731.1| hypothetical protein Nham_3542 [Nitrobacter hamburgensis X14] gi|91801896|gb|ABE64271.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 343 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 111/325 (34%), Gaps = 21/325 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D ++ L+ + + + + + L T + D + + + Sbjct: 20 FVDALSTLVLAIVFLLSVFLVVQFFLSQEVSGKDKALEQLNTKIAQLTDLLSLEKLGKLS 79 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D S + + N N+Q ++ + S Sbjct: 80 LGDEVSQLRAGLASAEAERDRVKGLYDGLAGAGNNAAGRNTQLNKALDSEKQVSSRALAQ 139 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------- 209 + T ++ ++ L + + + R+ DL ++++ L+ V + Sbjct: 140 VEVLTQQISALRRQLAALEDALDASEKKDKESQNRIADLGQRLNVALAKRVQELSRYRSE 199 Query: 210 --NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266 ++ +L ++ ++ FD + + LPE L K+ L + I Sbjct: 200 FFGRLRTILGNRPDIRVVGDRFVFQSEVFFDTAQATLLPEGKAELDKVAGALIDLDKQIP 259 Query: 267 -------SIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + GHTD P + + + NW LS RA S Q L+ GV R+ +GF Sbjct: 260 HEIAWVLRVDGHTDVRPISSPVFKSNWELSSARAISVVQYLVSLGVPPQRLVA-AGFGEF 318 Query: 319 RLKIASDPMNS--ANRRIDILVEDR 341 + ++ NRRI++ + +R Sbjct: 319 QPLDPGTTEDAYKRNRRIELKLTER 343 >gi|120554886|ref|YP_959237.1| flagellar motor protein MotD [Marinobacter aquaeolei VT8] gi|120324735|gb|ABM19050.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 260 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 13/195 (6%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-----KILAMKRKKRLQD 194 SE + + ++ ++ +PP E ++ A R + L+ Sbjct: 50 SETFTGVFNAPQRSLQPVTVGGQPVRAPQQQHEDVIPPPVTEAPRNPELDAEGRTEALRT 109 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A +++ L+ + V ET+ I +++ N+ +F + P ++ V++K Sbjct: 110 MANQLAMEFDELINQGV---VSLETSSEWIELNL---PNSMLFGSGDAEPHYDSFEVIEK 163 Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I VL + + + G TD P R + NW LS RA + ++LM G+ +R++ + Sbjct: 164 IASVLRNRDNAVKVEGFTDNQPIRTSRFPSNWELSTARAAAVARMLMMEGIEPERLAAV- 222 Query: 314 GFAHHRLKIASDPMN 328 G+ ++ +D Sbjct: 223 GYGQYQPVARNDTEE 237 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ D +N W I YADF+T+L AFF+VM+ +++ ++ K + + F Sbjct: 1 MRRRRPPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETFTGVFNAP 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + + P Q D+ I +T+ + ++ + + + + + N + + Sbjct: 61 QRSLQPVTVGGQPVRAPQQQHEDV-IPPPVTEAPRNPELDAEGRTEALRTMANQLAMEFD 119 Query: 137 S 137 Sbjct: 120 E 120 >gi|254497489|ref|ZP_05110282.1| flagellar motor protein MotD [Legionella drancourtii LLAP12] gi|254353304|gb|EET12046.1| flagellar motor protein MotD [Legionella drancourtii LLAP12] Length = 255 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 12/156 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + QD I+ +LS L N ++ R I + D ++ +F + E +V Sbjct: 84 KFQDGLDDINQSLSELEDQN------YKINRQKGWIEL-DIKSGALFGSGDADLKAEALV 136 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L +I L S ++SI G+TD P NW LS RA S +VL G+ RI Sbjct: 137 KLMQIAGKLKKSHAIVSIEGYTDNVPIETPQYPSNWELSATRAASVGRVLNAYGIDSHRI 196 Query: 310 SKISGFAHHRLKIAS--DPMNSANRRIDILV-EDRQ 342 ++G+ + D + NRR+ I++ +R+ Sbjct: 197 M-VTGYGDQYPIADNVTDVGRALNRRVSIIIAVNRK 231 >gi|70729063|ref|YP_258799.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf-5] gi|68343362|gb|AAY90968.1| motB protein [Pseudomonas fluorescens Pf-5] Length = 294 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 6/169 (3%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 PL K+ D K I+ +S D I + + + I + Sbjct: 77 TPAKPLVKDSDQTDAGIAGASDPLKSIADDISAAFGDLISSNQMTVRGNE-LWVEI-ELN 134 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDR 291 ++ +F ++P + ++ K+ ++L I + G TD P + NW LS R Sbjct: 135 SSLLFGSGDAMPSDQAFTIIDKVAKILKPFDNPIHVEGFTDNLPIQTAQYPTNWELSSAR 194 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + S ++L GV+ R++ + G+ + + + NRR+ ++V Sbjct: 195 SASIVRMLAMQGVNPARMASV-GYGEFQPVANNATAEGRARNRRVVLVV 242 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N W + YADF+T+L AFF+VM+ I++ ++ K I + + + Sbjct: 3 RRRQQEEHVNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISEALIGVFTDSDRS 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K P + ++ + + K+S G + + ++I Sbjct: 63 LK-------PIPIGDERPKTVTPAKPLVKDSDQTDAGIAGASDPLKSIADDISAAFGD 113 >gi|47091738|ref|ZP_00229534.1| chemotaxis protein MotB [Listeria monocytogenes str. 4b H7858] gi|47020057|gb|EAL10794.1| chemotaxis protein MotB [Listeria monocytogenes str. 4b H7858] Length = 293 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N EKG D + K++ +++ Sbjct: 54 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 113 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+++ + + + G+LI+I D Sbjct: 114 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 170 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 171 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 227 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 228 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 283 >gi|15615801|ref|NP_244105.1| flagellar motor protein MotS [Bacillus halodurans C-125] gi|10175862|dbj|BAB06958.1| BH3239 [Bacillus halodurans C-125] Length = 250 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 10/188 (5%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L + D E P + + +K DL + ++ L + + + + Sbjct: 60 LPSAIDFESPKEDRGEERKEPFDEGEY--GDEQKDEVDLDELLAEVEEFLEENELTEQIS 117 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G+++ + +Q +F+ + LP L K+G ++ ++ + GHTD P Sbjct: 118 ATRDDRGVVLILQEQ---ALFETGEAEVLPGARPFLDKVGTLVELIPNIVKVEGHTDNRP 174 Query: 277 FRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 NW LS RA S + ++ V R +GF R + + NR Sbjct: 175 ISTYRYPSNWELSGARASSVIRYIIDHHNVDPSRFIA-TGFGDTRPVVPNTTEENLQQNR 233 Query: 333 RIDILVED 340 R+ I++ D Sbjct: 234 RVIIVISD 241 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ W + ++D MT+++ FF++++ ++ D +AI + F + + Sbjct: 1 MKRRKRQ--PEKGAPRWMVTFSDLMTLILVFFILLFSMSVVDAQKFRAIAESFQ--QRQV 56 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 D ++P E + + + + D Sbjct: 57 FEFLPSAIDFESPKEDRGEERKEPFDEGEYGDEQKDE 93 >gi|326392537|ref|ZP_08213903.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991422|gb|EGD50048.1| OmpA/MotB domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 114 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299 S+ PE VL KIG +L I + G TD P N NW LS+ RA + ++L Sbjct: 1 SADVHPEEKDVLIKIGNMLKTLPNHIRVEGFTDDLPMHNSKFDSNWELSVIRATNVVKIL 60 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G+ RIS + G+ +R + +D NRR+DI++ + + Sbjct: 61 VNEVGIEPQRISAV-GYGEYRPVVPNDSEEHRRLNRRVDIVIMNTE 105 >gi|298529615|ref|ZP_07017018.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511051|gb|EFI34954.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 251 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++LQ+ ++ + + ++ ++G++ G I++ + +FD PE Sbjct: 95 RQLQEAQQETFADIQYYQNEHGIEGIVGARLDEG-KITLT-LPSEVLFDLGEVELRPEGE 152 Query: 250 VVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSE 306 +LQ + ++ HS + I+I GHTD P R R DNW +S RA + + L + G+ Sbjct: 153 ELLQDMRDIFNRHSEQRINIEGHTDNIPPREGGRFEDNWEISSLRALNTLRFLKQEGIDP 212 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R++ +G+A + + + NRR++ ++E Sbjct: 213 GRMTA-TGYADLQPLYPNTTEGNRARNRRVEFVLER 247 >gi|293605836|ref|ZP_06688207.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553] gi|292815749|gb|EFF74859.1| flagellar motor protein MotB [Achromobacter piechaudii ATCC 43553] Length = 361 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L ++ K V + I N +F + P + V++++ +L + Sbjct: 158 ESLGLGDLAKSVDVIINEQSVSFRIS---NELLFPSGQATLSPSGLDVIKRLAGILNKNA 214 Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +S+ GH+D P + NW LS RA S + L+ GV+ +R+ + G+A R Sbjct: 215 YQVSVEGHSDPVPIQTRQFASNWELSSSRATSVLRELVHDGVAPERLRAV-GYAETRPIE 273 Query: 323 ASDP--MNSANRRIDILVE 339 +D +ANRR++++++ Sbjct: 274 TNDTPAGRAANRRVELIMD 292 >gi|298209046|ref|YP_003717225.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] gi|83848973|gb|EAP86842.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] Length = 286 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 10/254 (3%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + DL + T++ ++ N + + Q ++ + + Sbjct: 20 SQKKYADLEAQQQETQDRLNTATVKLNSCLEEKAGATAKANALEDQVADLRRTNADLIET 79 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 KG +T ++ K + K L ++ + + ++L G + + Sbjct: 80 KGNLTTLTTKGATNLEKSLESLKEKDLQIKTLRDAVTRK-DSVTLALVTSLKGALGNMAD 138 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + + + + +SI D +F S VL K+ V+ + + GH Sbjct: 139 EDIEINVEKGVVYVSISD---KLLFKSGSYNVTSRAKEVLGKVATVVNAKPDIEFMVEGH 195 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--M 327 TD P +N DNW LS RA S ++L GV R++ +G +++ ++D Sbjct: 196 TDNVPIKNAVLEDNWDLSAKRATSVVRILQDEYGVPPQRMTA-AGRSYYIPVASNDTAEG 254 Query: 328 NSANRRIDILVEDR 341 + NRR I+V + Sbjct: 255 RAKNRRTRIVVLPK 268 >gi|330861237|emb|CBX71488.1| hypothetical protein YEW_CQ10830 [Yersinia enterocolitica W22703] Length = 89 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 47/85 (55%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 +N I++KK+ A ++ GSWKI YADFMT +MAFFLVMW+++ + I +Y Sbjct: 3 HQNHPVILVKKRKAKHGQAHHGGSWKIAYADFMTAMMAFFLVMWLLSVSSPQELTQIAEY 62 Query: 69 FNPFGKNLMTASKGIFDEQNPPERS 93 F K +++ + D +P Sbjct: 63 FRTPLKVALSSGEKSSDSTSPIPGG 87 >gi|154244796|ref|YP_001415754.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158881|gb|ABS66097.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2] Length = 340 Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 119/329 (36%), Gaps = 30/329 (9%) Query: 37 YADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 + D ++ L+ F+ + + + + ++ + E+ + Sbjct: 18 FVDALSTLLLVFIFLLSVFMLTQFFLTQEMSGKDNVMQRLQAQIRQLTELLSLERATGQT 77 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + L T+ D + E L +++ + K+ R Sbjct: 78 TDGELATLRASLEATETERDRLKSQLSAAPAPTSDEGRTRAL--AREVDLQKDVAARAVA 135 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--- 209 + + L + ++ ++ L+ + + + ++ DL ++++ L+ V + Sbjct: 136 QIELLNQQI---SALRRQMAALEEALNVAEKRDAESQTKITDLGRRLNVALAQRVQELTR 192 Query: 210 ------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 ++ +L ++ ++ FD+ S+ P PE + L K+ + Sbjct: 193 FRSEFFGRLRDILGNRPDVRVVGDRFVFQSEVFFDRGSATPRPEALAELDKLAGAILDLE 252 Query: 264 EVI--------SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + I I GHTD P NW LS RA + Q L+ GVS + +G Sbjct: 253 KSIPPDISWALRIDGHTDNRPIATPQFPSNWELSAARAIAVVQYLISKGVSPQHLIA-AG 311 Query: 315 FAHHRL--KIASDPMNSANRRIDILVEDR 341 F ++ ASD + NRRI++ + +R Sbjct: 312 FGEYQPIDPAASDEARARNRRIELKLTER 340 >gi|222149694|ref|YP_002550651.1| hypothetical protein Avi_3670 [Agrobacterium vitis S4] gi|221736676|gb|ACM37639.1| flagellar motor protein [Agrobacterium vitis S4] Length = 343 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 26/344 (7%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + D + + + + +M V + ++ N + Sbjct: 5 RNRKRDRGADYWPGFVDALSTLLIAIMFLLTVFVVAQFVLSREISGKDEVLNRLNNQIAE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E+ + +L ++ + + + Sbjct: 65 LTQMLALEKGGKQDLEDALANLQSSLDTSEKERSRLQSLLDTGAGNSAQAQVKIGELSGK 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E + S S+ + L I E +K++ + ++ DL ++ Sbjct: 125 LDEQQQVSARAMSQIDLLNQQIAALRAQIAAVEQALQASEAKDQ----NSQAKIADLGRR 180 Query: 199 ISSTLSGLVADNIVK-----GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETI 249 ++ L+ V + G L E I I+ ++ +F + P+ Sbjct: 181 LNVALAQKVQELNRYRSDFFGRLREILSDRQNIRIVGDRFVFQSEVLFPSGGADMNPQGQ 240 Query: 250 VVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 + K+ L + I + GHTD R DNW LS RA S + L Sbjct: 241 EEMVKLANALIDLAKEIPPDINWVLRVDGHTDNVQLSGNGRYPDNWALSAARAVSVVKFL 300 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + GV DR++ +GF + D + NRRI++ + +R Sbjct: 301 ISKGVPADRLAA-AGFGEFQPIAPGDTPEARAQNRRIELKLTER 343 >gi|313624928|gb|EFR94836.1| chemotaxis protein MotB [Listeria innocua FSL J1-023] Length = 275 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+++ + + + G+LI+I D Sbjct: 96 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKITTKYSEEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELSADKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIATNREKNRRVEIMVRP 265 >gi|121998797|ref|YP_001003584.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1] gi|121590202|gb|ABM62782.1| OmpA/MotB domain protein [Halorhodospira halophila SL1] Length = 242 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 8/230 (3%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + + + +Q+ R + + + + + + E Sbjct: 3 EQTPTNRRTRQFNRQVQPEGEKDDDNSWLLVYLDVITLLLIVFVILLALLEPEEDDDREG 62 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQ 231 L + + L+ L + + V + + G+ + + D Sbjct: 63 LGDGILEGREHILEGEPSVLEGLPEPLDEADPVEVPAELEEAGIQAVGEEETLTFRLDD- 121 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290 +F+ + E + ++ + + +S+ GHTD P NW LS Sbjct: 122 --AVLFETGRAELQAEGQAAIDELIPIFQATGVRLSVEGHTDNIPIATGQFPSNWELSSA 179 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA + + L + G+ R+ I G+ R ++ + NRR++I + Sbjct: 180 RASAVLRYLEEQGLDPRRMRAI-GYGDIRPIADNETAEGRAENRRVEITL 228 >gi|217965216|ref|YP_002350894.1| chemotaxis protein MotB [Listeria monocytogenes HCC23] gi|217334486|gb|ACK40280.1| chemotaxis protein MotB (Motility protein B) [Listeria monocytogenes HCC23] gi|307570225|emb|CAR83404.1| chemotaxis protein [Listeria monocytogenes L99] Length = 275 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+N+ + + + G+LI+I D Sbjct: 96 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265 >gi|16799769|ref|NP_470037.1| hypothetical protein lin0694 [Listeria innocua Clip11262] gi|16413146|emb|CAC95926.1| motB [Listeria innocua Clip11262] gi|313620085|gb|EFR91593.1| chemotaxis protein MotB [Listeria innocua FSL S4-378] Length = 275 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S ++ A+++ + + + G+LI+I D Sbjct: 96 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKITTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELSADKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIATNREKNRRVEIMVRP 265 >gi|332291582|ref|YP_004430191.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169668|gb|AEE18923.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 327 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 113/314 (35%), Gaps = 12/314 (3%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 F L+ + + + K +E ++ K+ + + D + ++ ++ Sbjct: 2 FKKSLLIILAISALTSCVPAKKFKDLEASYSRLRKDNRSLEDNVKDLKAELDKRNEIYDK 61 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 +S D + V+ G K + S S + ++ + +L Sbjct: 62 VSKDLATSMTRVEELEGENASAKANLEQLQASYNALESNSSATIAENSQKNRQLLAELET 121 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFE 218 + L K + +R R+ +L I++ + + V + L + Sbjct: 122 KQNDLAEKTAALEAERTRLEKLQKDLAERSARVDELEGVIAAKDATMRVLKESISKALTD 181 Query: 219 TTRTGILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 G+ + D N +FD S ++++G VLA + ++ + I GH Sbjct: 182 FEGKGLTVEQRDGKVYVSLENKLLFDSGSWTVGANGTKAVKQLGSVLADNPDIAVLIEGH 241 Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN- 328 TD P+ NW LS RA + ++L + + + +G + +D Sbjct: 242 TDNVPYGGSGNLAGNWDLSAKRATAIVEILRTNRDIDPKNLTAAGRGEYAPVAENDTAEN 301 Query: 329 -SANRRIDILVEDR 341 + NRRI++++ + Sbjct: 302 KAKNRRIEVILTPK 315 >gi|308273524|emb|CBX30126.1| hypothetical protein N47_D29350 [uncultured Desulfobacterium sp.] Length = 219 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 17/190 (8%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L S+ ++S+ NY + + + ++++ + NI V Sbjct: 42 LTMSSINQRSLKNTFNYLKQSIGGSAYQGHRGSESIENIKAALK---------NIDGSVD 92 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 + GI++S+ + +F+ S+ E +L I V I I GHTD P Sbjct: 93 IKEDERGIVLSLHED---ILFEPGKSVIKKENYRILDSIAAVADACPNKIMIMGHTDDLP 149 Query: 277 FRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANR 332 + NW LS R + + + DR + + G+ R ++ S NR Sbjct: 150 VQVGEYESNWELSAYRGLYVLNYFINNKHLPPDRFN-VGGYGAFRPLFPNNSAKNRSLNR 208 Query: 333 RIDILVEDRQ 342 R++I+ + ++ Sbjct: 209 RVEIIFKYKE 218 Score = 41.0 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 15/104 (14%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 +N+ K + ND+ +I +W + +D + +++ FF+++ +++ + Sbjct: 3 INTKRSKIETNDETVI------------KTDTWMVTLSDIIMLMITFFVMLLTMSSINQR 50 Query: 61 TKKAIEQYFNP-FGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 + K Y G + +G +N +++ ID S+D Sbjct: 51 SLKNTFNYLKQSIGGSAYQGHRGSESIENI--KAALKNIDGSVD 92 >gi|332283607|ref|YP_004415518.1| hypothetical protein PT7_0354 [Pusillimonas sp. T7-7] gi|330427560|gb|AEC18894.1| hypothetical protein PT7_0354 [Pusillimonas sp. T7-7] Length = 443 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 8/143 (5%) Query: 201 STLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+G +A I + +L +I + +F S E I VL ++ + L Sbjct: 287 RALTGFLAPEIRENLLAVRNEVDRSVIILH---GDGLFTSGSDELRSEYIPVLSRVADAL 343 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 S I + G++D P R + NW LS RA + +L +R+ + G Sbjct: 344 NQSRGSILVSGYSDNVPIRTVRFPSNWELSQARADAVKALLQDRLTQPERV-RAEGRGDA 402 Query: 319 RLKIASDP--MNSANRRIDILVE 339 ++ + NRR++I + Sbjct: 403 NPVAPNNTPANRARNRRVEITLL 425 >gi|325954396|ref|YP_004238056.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323437014|gb|ADX67478.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 297 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 14/220 (6%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + N F S+ ++++ ++ + L K+ S E + +++ + L Sbjct: 74 EQQNAFEALAQDSSKELQDNIEKNRDLLNQLAKTRSDLTSKETELQAKIKRINELENLLA 133 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++K + L + IS L G KG+ I +S+ N +F Sbjct: 134 QQRKAIAKLKQSISDALRGFEG----KGITVYEKNGQIYVSM---ENKLLFSTGKWDVRQ 186 Query: 247 ETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA---RDNWRLSLDRAYSAYQVLMKS 302 E I L ++ VL + I I GHTD+ P+ +DNW LS+ RA + ++L K Sbjct: 187 EGISALVQLSSVLKKQNDLNILIEGHTDSVPYGAKQGDVQDNWDLSVMRATAVTKILQKD 246 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 GV +++ +G + + A++ + NRR++I++ Sbjct: 247 GVRPTQMTA-AGRSKYIPIGDNATESGKAKNRRVEIIITP 285 >gi|94268092|ref|ZP_01291083.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93451732|gb|EAT02500.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 240 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSL 289 F + P ++ +L+++ E+LA + I GH+D P + NW LS Sbjct: 123 EEKLAFASGRAEPREPSLPILERLAELLAGKPAYRVIIAGHSDDLPISSERYPSNWYLSS 182 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA + + L + GV R++ G A + ++A+D + NRR++I + + Sbjct: 183 ARAVAVAEYLQQQGVDPGRLT-TQGHAEFKPRVANDSPQNRAKNRRVEITLLRDE 236 >gi|71280429|ref|YP_268267.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H] gi|71146169|gb|AAZ26642.1| putative chemotaxis MotB protein [Colwellia psychrerythraea 34H] Length = 329 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 115/326 (35%), Gaps = 71/326 (21%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + K++ A++ + W + YAD+MT++ A F+V++ A+ ++ Sbjct: 4 VRKRRAAVEHDNIH--RWLVSYADYMTLMFALFVVLY-----------AMAMVNEKPFES 50 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + + +F S +E + D + K + N I ++ Sbjct: 51 ITESFGRVFQA--------------SEEETKNRGHGDGVLMVNTSKTNIKLYGNGILDIA 96 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + ++ KN I K L L Sbjct: 97 GPELLDNEKN----------------------------------LSNISDAKVGSNLSSL 122 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K++ + L LV + + + I + + +F SS +L I Sbjct: 123 EKELHTALYELVESGFAQ---LQIDGDWLEIEL---NSGLLFPSGSSSATLSAEAILTVI 176 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +V+ ++ I +RG+TD N NW LS+ RA + +VL K G++ R+ I G Sbjct: 177 YDVIGQASNFIRVRGYTDNQVINNEIYSSNWELSVFRATAILRVLEKLGLNPARM-AIEG 235 Query: 315 FAHHRLKIAS--DPMNSANRRIDILV 338 + + + + NR++ + + Sbjct: 236 YGQYYPSADNLTSEGRAKNRKVVVAI 261 >gi|225164037|ref|ZP_03726322.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2] gi|224801343|gb|EEG19654.1| OmpA/MotB domain protein [Opitutaceae bacterium TAV2] Length = 253 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 5/194 (2%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + K P + + L LA+++ L L Sbjct: 56 AAAGVMPMEKFRPETGKSSGEKDNPGTGLTDQKAVDLEYLNKLARELYRLL-NLDESRTD 114 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + + T G+ + + D+ P+F + V+ + ++ ++I GHT Sbjct: 115 NPIDIQVTSDGLRVILYDRNGRPLFVDRGTELTEWGRFVMDNLAWLIDRDHFYVTIEGHT 174 Query: 273 DASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 A + + W LS DRA ++ + L + VS I ++ G+A R + +D + Sbjct: 175 RAGLTLDDRPSSYTLWELSADRANASRRALTEHVVSPALIERVVGYADTRPLLDTDATSE 234 Query: 330 ANRRIDILV-EDRQ 342 +N+R+ + + R+ Sbjct: 235 SNQRVTLSLRLPRK 248 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + G+WK+ YADF+T +MA F+V+W I+A D + +YF K L+ A+ G+ Sbjct: 3 GNSGSSGAWKVAYADFVTAMMALFMVLW-ISAQDHQILISTARYFQAPTKPLLNAAAGVM 61 Query: 85 DEQ-NPPERSSQNKIDLSIDEHITKNSV 111 + PE + + +T Sbjct: 62 PMEKFRPETGKSSGEKDNPGTGLTDQKA 89 >gi|90418921|ref|ZP_01226832.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1] gi|90337001|gb|EAS50706.1| flagellar motor protein [Aurantimonas manganoxydans SI85-9A1] Length = 342 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 110/339 (32%), Gaps = 17/339 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + D + + + + + +M V + ++ + + Sbjct: 5 RNRRSDRSVDYWPGFVDALSTLLLAIMFLLSVFVLAQFLLSREITGKDEVLDRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E++ + + +L + + + + Sbjct: 65 LTQLLALERSTTQDNEDQIANLRASLAGVEEERSRLQEALESGSGSAAAASARVEGLQTA 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDL 195 SE + S S+ + L + I E S++ K +RL Sbjct: 125 LSEEQELSQRARSQVELLNQQLAALRQQIGALERALEVSESRDAESQTKIADLGRRLNVA 184 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + LS +D + + R I I ++ +F S + + Sbjct: 185 LAQRVQELSRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGSDVLQEAGTDEMA 244 Query: 254 KIGEVL--------AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGV 304 K+ E + + +I + GHTD P DNW LS +RA + + L+ GV Sbjct: 245 KLAEAIVALNREIPSDINWIIRVDGHTDNVPISGGRFEDNWELSTERAGAVVKYLISQGV 304 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +R++ +GF ++ + + NRRI+ + +R Sbjct: 305 PPERLAA-TGFGEYQPIDPDNTPEARARNRRIEFKLTER 342 >gi|124516288|gb|EAY57796.1| putative flagellar motor protein (OmpA/MotB) [Leptospirillum rubarum] Length = 261 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 9/158 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K + + L LV + KG + T+ GI++ I ++ +F + + Sbjct: 78 KATPQVQSVMIRALELLVQKSSEKGDMKVVQTKEGIVLRI---QSRFLFASGHARVRRKA 134 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAY-QVLMKSGVSE 306 + VL+KI +LA + I + G+TD P R NW LS RA + ++L + Sbjct: 135 VPVLRKIAALLARTNHEIRVHGYTDNQPIRTSRYPNNWALSTMRAVNVLTRLLEYGSIDP 194 Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 R+ +GF R ++ NRR++IL+ +R+ Sbjct: 195 GRMGA-AGFGKFRPIASNLTPEGREKNRRVEILIMNRE 231 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 K + NL W + YADF+T+L AFF++++ I + + + + Sbjct: 3 KKPRHEEHENLERWLVSYADFITLLFAFFVMLYAIASVNTGKFRVLSN 50 >gi|290893982|ref|ZP_06556957.1| chemotaxis protein MotB [Listeria monocytogenes FSL J2-071] gi|290556428|gb|EFD89967.1| chemotaxis protein MotB [Listeria monocytogenes FSL J2-071] Length = 289 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171 + ++ E + N EKG D + K++ +++ Sbjct: 50 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 109 Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S ++ A+N+ + + + G+LI+I D Sbjct: 110 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIT---AENLGTKMTTKYSDEGLLITIRD 166 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 167 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 223 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 224 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 279 >gi|295136349|ref|YP_003587025.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294984364|gb|ADF54829.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 316 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 15/228 (6%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + S ++ ++ +S + ++L + ++ E L L K+ Sbjct: 80 QSNYENLKSSYDALEKNSSAAIAENSRQNRELLAQLEEKEKTLAAEQARLEKLQKDLAAR 139 Query: 186 MKRKKRLQDL-------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 +R L+ L + +S + D KG+ E + +S+ N +F+ Sbjct: 140 SQRIDELEGLIAAKDAKMNALKDAISKALTDFEGKGLTVEQRDGKVYVSM---ENKLLFN 196 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR--DNWRLSLDRAYSA 295 S + + ++G VLA + ++ + I GHTD P+ DNW LS RA + Sbjct: 197 SGSWAVNADGRQAVNQLGSVLAQNPDISVLIEGHTDNVPYGGNGPLKDNWDLSTKRATAI 256 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 Q+L ++ + + +G + +D + NRRI++++ + Sbjct: 257 VQILRENSNIDPQNLTAAGRGEYAPVATNDTAEGKAKNRRIEVILTPK 304 >gi|163781627|ref|ZP_02176627.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1] gi|159882847|gb|EDP76351.1| flagellar motor protein MotB [Hydrogenivirga sp. 128-5-R1-1] Length = 235 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 9/155 (5%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R K+ +L K+I+ L++ I L T + + ++ S P P+ Sbjct: 84 RVKKFAELKKEITKIKEELLSMGIEADYLVTGTCMKLRV-----NTNRLYPLGSEEPYPQ 138 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSE 306 + + L + I+ G+TD P N NW LS RA S ++ + G + Sbjct: 139 AKELFLNMCSRLKPFSLPITFEGYTDNMPISNPRFPSNWELSAMRAVSVLRLFITCGYPQ 198 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + +S + G+ H +D NRRI+ ++ Sbjct: 199 ELLSAV-GYGEHHPIAPNDTPANRERNRRIEFCIK 232 Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKNLMTA 79 ++ +W + D M++L+ FF++++ ++ + + ++ FG + Sbjct: 4 KKKEEECPKAPAWLTSFGDLMSLLLTFFILLYSMSIISLEKFYQVLKGLIEAFGGKQVIF 63 Query: 80 SKG 82 S+G Sbjct: 64 SEG 66 >gi|330722438|gb|EGH00277.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC2047] Length = 130 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + I VL + IS+ GHTD+ P ++ R NW LS RA S L K GV Sbjct: 1 MASIRTVLKNVEGKISVEGHTDSVPIATSVFRSNWDLSSARALSVAHELFKGGVLNSNRF 60 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILV 338 ++GFA + +A+D + NRR++I++ Sbjct: 61 MVTGFADAKPLVANDNAANRAKNRRVEIII 90 >gi|258404712|ref|YP_003197454.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257796939|gb|ACV67876.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692] Length = 248 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 6/160 (3%) Query: 186 MKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 M ++ L + +++ + + + + + + R +++ + D +FD + Sbjct: 74 MAQQNNLNESLQRVYQNIKNRIDNLEVNENIKLVKDRGAVVLRLNDS---LLFDSGETAL 130 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P +L+++ +++ + + GHTD P NW +S++RA S + L + Sbjct: 131 KPRAAPLLREVAQLVRPLHLDMRVEGHTDNVPVSRPGISNWDISIERAVSVVKFLTSRDL 190 Query: 305 SEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 +G+ R + +D + NRR+D +E + Sbjct: 191 LPPSRLSAAGYGDQRPLVRNDSPENRAKNRRVDFYLEQDE 230 >gi|94264345|ref|ZP_01288137.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93455239|gb|EAT05452.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRLSL 289 F + P ++ +L+++ E+LA + I GH+D P + NW LS Sbjct: 123 EEKLAFASGRAEPREPSLPILERLAELLAGKPAYRVVIAGHSDDLPISSERYPSNWYLSS 182 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA + + L + GV R++ G A + ++A+D + NRR++I + + Sbjct: 183 ARAVAVAEYLQQQGVDPGRLT-TQGHAEFKPRVANDSPQNRAKNRRVEITLLRDE 236 >gi|239905020|ref|YP_002951759.1| hypothetical protein DMR_03820 [Desulfovibrio magneticus RS-1] gi|239794884|dbj|BAH73873.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 424 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 9/185 (4%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 +++ ++ K + A +++ ++L + ++ L + + + Sbjct: 45 PQALENLTRQLFQSKEEEKKAEKRAQDLERKTEELQTAYDALVADLRGEVDSRQIRVRQF 104 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 R + I+ +D +F S+ P +L ++G VLA + I + GHTD P + Sbjct: 105 REKLEINFVD---KILFPSGSAEISPRGRDILTRVGAVLAKVKDKSIYVVGHTDNVPIHS 161 Query: 280 I-ARDNWRLSLDRAYSA-YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 NW LS RA S + G++ +R + + G A ++ ++ NRR+D Sbjct: 162 ALFPSNWELSASRAASVIRHLSESGGLAPERFTAM-GRAFYQPVASNATPEGRQENRRVD 220 Query: 336 ILVED 340 I+V D Sbjct: 221 IIVAD 225 >gi|322435021|ref|YP_004217233.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321162748|gb|ADW68453.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 255 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 15/192 (7%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 + K +TD S+N P+ A + RL+++ K Sbjct: 63 QHSKTPPITTDGNSSLNLATAPIALPVPSAAESAEATEIRLKEVVKAQVEK-----KQLT 117 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V T G+++S+ R F S+ PE + VLQ + L + + + GH Sbjct: 118 SDAVSVRATGDGLVVSL---REAGFFASGSADVRPEALAVLQTVAAALPRQS--MRVEGH 172 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPM 327 TD P NW LS RA + ++L+ + V ++S +G A R A+D Sbjct: 173 TDNIPIHTTQFATNWELSTARAATITRLLIAQNAVDPAQVSA-AGDAEFRPIADNATDAG 231 Query: 328 NSANRRIDILVE 339 + NRR+DI++ Sbjct: 232 RAQNRRVDIILL 243 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 8/173 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + + W + YADF+T+L AFF+V++ D + + Sbjct: 1 MSKKKHPEHVNH--ERWLVSYADFITLLFAFFVVLFASGQNDKRKQVMLAH-----AVQS 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 GIFD+ + + S++ ++ + + + + RL+ + Sbjct: 54 AFMHNGIFDQHSK-TPPITTDGNSSLNLATAPIALPVPSAAESAEATEIRLKEVVKAQVE 112 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 +Q S+ + + S + + + + A+ R+ Sbjct: 113 KKQLTSDAVSVRATGDGLVVSLREAGFFASGSADVRPEALAVLQTVAAALPRQ 165 >gi|299535178|ref|ZP_07048502.1| chemotaxis protein motB [Lysinibacillus fusiformis ZC1] gi|298729299|gb|EFI69850.1| chemotaxis protein motB [Lysinibacillus fusiformis ZC1] Length = 250 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 12/190 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D S + + N ++ +K ++ L ++ + + ++ + + Sbjct: 59 DGGTSFLEQPAPVPTPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIA---VNEMEDQF 115 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 E T G+L++I D +FD + PE + + +++ +L I I GHTD Sbjct: 116 ATEMTDEGLLVTIRDS---ILFDPGQATVKPEYVPIAKELSTMLESDPARNIVITGHTDN 172 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSA 330 P N++LS+ RA ++L++S + R S G +R +D + Sbjct: 173 VPAGPNFTSNFQLSVMRATKFLELLIESNDKLDPTRFSA-KGNGEYRAIAPNDTAEGRAK 231 Query: 331 NRRIDILVED 340 NRR+++L++ Sbjct: 232 NRRVEVLIQP 241 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 53/145 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + SW + YAD +T+L+A F++++ ++ D + + + FN + + Sbjct: 10 HDEHIDESWLVPYADILTLLLAVFIILFASSSVDQEKLERMSAVFNQVFDGGTSFLEQPA 69 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 P S Q S + ++K N + + +++ + Sbjct: 70 PVPTPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIAVNEMEDQFATEMTDEGLLVTIR 129 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINK 169 +S+ D + + + K ++ Sbjct: 130 DSILFDPGQATVKPEYVPIAKELST 154 >gi|148559624|ref|YP_001259565.1| hypothetical protein BOV_1656 [Brucella ovis ATCC 25840] gi|148370881|gb|ABQ60860.1| OmpA/MotB domain [Brucella ovis ATCC 25840] Length = 314 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 93/215 (43%), Gaps = 19/215 (8%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + ++ +L +S D EK ++ + L+++ ++++ LA+++ Sbjct: 105 NEGSGAGAAAEKRAGELAQSLDAEKQVSARALNQVELLNQQIAA---LRRQIAALAQRV- 160 Query: 201 STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 L+ +D + + + I I ++ +F S+ P+ V ++K+ + Sbjct: 161 QELNRYRSDFFGRLREILSDKENIRIVGDRFVFQSEVLFPTGSAEINPKGQVEMKKLADA 220 Query: 259 L--------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 + V+ + GHTD P R DNW LS RA + + L+ +GV +R Sbjct: 221 IIQLNREIPDDINWVLRVDGHTDNVPLAGTGRFRDNWELSSARATAVVKFLIANGVPANR 280 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +GF ++ ++ + NRRI++ + +R Sbjct: 281 LVA-AGFGEYQPLDTANTADARARNRRIELKLTER 314 >gi|331006366|ref|ZP_08329676.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] gi|330419826|gb|EGG94182.1| Flagellar motor rotation protein MotB [gamma proteobacterium IMCC1989] Length = 321 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 10/171 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 E + L L L L+ + ++ + + IS+ Sbjct: 58 EQQNTTETKQAAESPSASVIELPTLETAFYQQLLPLIEEGAIE---VSSNELWLQISLS- 113 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSL 289 N +FD + P + V+ +I ++ + I + G TD NW+LS Sbjct: 114 --NRILFDIGNVKPSEQANEVIAQIATIMKDTVNPIRVEGFTDNLAINTAQFPSNWQLSA 171 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RA + Q+L SGVS ++S + G+ + +S+ + NRR+ +++ Sbjct: 172 ARASAIVQLLSASGVSPSQLSAV-GYGEFQPIADNSSEAGRAKNRRVVLMI 221 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 5/183 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ + W + YADF+T+L AFF+VM+ ++ ++ + + N F Sbjct: 2 LKRRSLDLHINH--ERWLVSYADFVTLLFAFFVVMYSVSQINESKYEELTSTLNGFFSEQ 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK---QYQRLENNIFY 133 ++ ++P + + ++ + + Q +F Sbjct: 60 QNTTETKQAAESPSASVIELPTLETAFYQQLLPLIEEGAIEVSSNELWLQISLSNRILFD 119 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + N + SE + + + KD +E + S ++ A + +Q Sbjct: 120 IGNVKPSEQANEVIAQIATIMKDTVNPIRVEGFTDNLAINTAQFPSNWQLSAARASAIVQ 179 Query: 194 DLA 196 L+ Sbjct: 180 LLS 182 >gi|114321225|ref|YP_742908.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227619|gb|ABI57418.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 251 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 12/193 (6%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 E+ L S+ + E L L + + + ++ L L D Sbjct: 65 PEQEPGLFAGQAGVPSVLEGEFGPLYALPESPAPVADPATEEDPVDQAMADELDALGDD- 123 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 VL E IS + +F + + + VL ++ VL S I++ G Sbjct: 124 --IDVLVEAGSISFRIS-----DEILFPSGEAELTDQGLQVLGQLIPVLEVSDHRITVEG 176 Query: 271 HTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 HTD P NW LS RA + L G++ R+ + +G A R A+ Sbjct: 177 HTDNVPIATERFPSNWELSTGRATRVLRFLEAEGIASTRL-QATGLADTRPIAGNATAEG 235 Query: 328 NSANRRIDILVED 340 + NRR++++++ Sbjct: 236 RAQNRRVELVLQT 248 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 5/90 (5%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 SW +VY D MT+L+ F+VM + P + + Sbjct: 29 EDTEGESWLLVYLDVMTLLLVMFVVMLAFTEDHAGVPEQ-----EPGLFAGQAGVPSVLE 83 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 + P + D ++ VD + Sbjct: 84 GEFGPLYALPESPAPVADPATEEDPVDQAM 113 >gi|163857259|ref|YP_001631557.1| OmpA-family protein [Bordetella petrii DSM 12804] gi|163260987|emb|CAP43289.1| OmpA-family protein [Bordetella petrii] Length = 334 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 8/235 (3%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 S+ + + L + + + L + D + Sbjct: 92 GSIARAGAAPAGQAPAHALLAALLPMPELPEQAELPGLAAALPVPATALAPAGDSPAAPA 151 Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 + + + + + + + +++ L D++ GV I I Sbjct: 152 ANLRQTSDDAAGGEPPSAPKIEPEPEPTQPEPPSIAELGLDDLGDGVDVIVNEKSISFRI 211 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWR 286 N +F ++ P + ++ ++ +V+ S +S+ GH+D P + NW Sbjct: 212 S---NELLFPSGQAVLSPAGLGLISRMAKVINRSQGYPVSVEGHSDPVPIQTRQFPSNWE 268 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LS RA S + L++ GV R+ + G+A ++D +ANRR+++++E Sbjct: 269 LSAGRATSVLRELVRDGVDPGRLRAV-GYADTHPIASNDTPQGRAANRRVELIME 322 >gi|330808241|ref|YP_004352703.1| flagellar motor protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376349|gb|AEA67699.1| flagellar motor protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 294 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 10/192 (5%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 DS++ D + + L+ +A IS+ L++ Sbjct: 58 DSDRALKPIPIGDERPKTTTPAKPLVKDSEQVDAGIAGGSDPLKSIADDISAAFGDLISS 117 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N + + I + ++ +F ++P ++ K+ +L I + Sbjct: 118 N---QMTVRGNELWVEIEL---NSSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIHVE 171 Query: 270 GHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G TD P R NW LS R+ S ++L GV+ R++ + G+ + + Sbjct: 172 GFTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLASV-GYGEFQPVANNATAE 230 Query: 327 MNSANRRIDILV 338 + NRR+ ++V Sbjct: 231 GRARNRRVVLVV 242 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ ++ N+ W + YADF+T+L AFF+VM+ I++ ++ K I + + Sbjct: 1 MARRRHTEEHVNH-ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDS 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHI 106 A K I P+ ++ K + E + Sbjct: 60 DRALKPIPIGDERPKTTTPAKPLVKDSEQV 89 >gi|86130870|ref|ZP_01049469.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85818281|gb|EAQ39441.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 326 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 115/310 (37%), Gaps = 12/310 (3%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 L+ V +++ K +E ++ K+ SK + + + E++ + + +D Sbjct: 5 LICLLAVSALVSCVPAKKFKDLEAKYSRLRKDNRNMSKELAEAKAALEKTKEERDLALVD 64 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 N + G + K + + + S + ++ + ++L + Sbjct: 65 LDALSNKYNEVSGEYDAAKANLAQLQDSYNALETNSSASIAENSKKNRQLLEELESKQND 124 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRT 222 L + + R R+ +L I++ + + + + L + Sbjct: 125 LAEKTAALEAERKRLERLQKDLADRSARVDELEGLIAAKDAKMRGLKDAISKALTDFEGK 184 Query: 223 GILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 G+ + D N +FD S ++++G VLA + E+ + I GHTD Sbjct: 185 GLTVEQRDGKVYVSLENKLLFDSGSWTVGTNGTKAVKQLGSVLADNPEIAVLIEGHTDNV 244 Query: 276 PFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 P+ NW LS RA S +L ++ + + +G + +D + N Sbjct: 245 PYGGSGNLQGNWDLSAKRATSIVNILRQNKRIDPKNLTAAGRGEYAPVAENDTPENKAKN 304 Query: 332 RRIDILVEDR 341 RRI++++ + Sbjct: 305 RRIEVILTPQ 314 >gi|114777572|ref|ZP_01452553.1| motb protein [Mariprofundus ferrooxydans PV-1] gi|114552043|gb|EAU54560.1| motb protein [Mariprofundus ferrooxydans PV-1] Length = 232 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 13/184 (7%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 K+ + S K E +PPL +K+++ ++ + + + + + + D+ V+GV+ Sbjct: 56 KAVSVLNSGTKTELQIIPPLQMQKLISP--RELMLAMRQNSRAIMKNSIMDHKVRGVILN 113 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP-- 276 R + I + +FD+ S++ PE++ L K+ ++LA S I ++GHT+A+ Sbjct: 114 -DRLYLRI-----PDAILFDRGSAVLKPESVKTLVKLAQMLAMSPGNIRVQGHTNANIDL 167 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 + D W LSL RA S +L GVS R+ ++G+ + S NRR+ Sbjct: 168 DNSAFDDPWSLSLARAASVLHILEDEGVSPTRL-SLAGYGPSQPISTEATPFGRSKNRRV 226 Query: 335 DILV 338 +I+V Sbjct: 227 EIMV 230 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 IKKK ++ N +W +AD +++++ FF+++ ++ D IE F L Sbjct: 3 IKKKWPVEYQA-NTEAWMTTFADLVSLMLTFFILLISMSTMDKTGLADIEASFRKAVSVL 61 Query: 77 MTASK 81 + +K Sbjct: 62 NSGTK 66 >gi|45658882|ref|YP_002968.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602127|gb|AAS71605.1| flagellar motor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 223 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 10/180 (5%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +E + EK + + L+ + ++ + A ++ F + I I Sbjct: 30 EESKLENQRILGEKGDLSRSLEELKRIQEESDRRIQEYKA--LMSTFRFLIDAGKLKIKI 87 Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 ID R + +F S+ P ++++ +LA I GHTD +P Sbjct: 88 IDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTGIKG 147 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVED 340 NW L+ RA + ++K+G+ E RIS S A + P N S+NRRI+I++ Sbjct: 148 YTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIVIVP 207 >gi|330991015|ref|ZP_08314969.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1] gi|329761836|gb|EGG78326.1| hypothetical protein SXCC_00923 [Gluconacetobacter sp. SXCC-1] Length = 320 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 94/247 (38%), Gaps = 21/247 (8%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 N+ + + + S ++ + + RDS + + + +N + Sbjct: 76 TTALQNEVASLHKAHDADVATATSLTAQLNQQTSERDSAQAR-TTALDEQVAQLNAQLAA 134 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGI 224 L + R +++ +L +++ L+ V ++ V+ + I Sbjct: 135 LSTVLEATEDTVHDRDRQISNLGMQLNVALAKKVEQLQQYRSEFFGRLRSVMQDHKGVQI 194 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASP 276 + ++ +F + PE + ++ + + L A ++ + GH D P Sbjct: 195 VGDRFVFQSEVLFPPGGADLSPEGVQEIRVLAKTLRQVAQQIPADVPWILRVDGHADRQP 254 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRI 334 + NW LS RA + ++L+ G+ ++ +GF+ ++ + P + NRRI Sbjct: 255 IHSAFPSNWELSSARAITVVKLLIAEGIDPHHLAA-TGFSDYQPLDKGTTPEAFARNRRI 313 Query: 335 DILVEDR 341 + + DR Sbjct: 314 EFRLTDR 320 >gi|311106778|ref|YP_003979631.1| motility protein B 2 [Achromobacter xylosoxidans A8] gi|310761467|gb|ADP16916.1| motility protein B 2 [Achromobacter xylosoxidans A8] Length = 320 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L ++ K V + I N +F + P + V++++ +L + Sbjct: 163 ESLGLGDLGKSVDVIINEQSVSFRIS---NELLFPSGQATLSPTGLDVIKRLAAILNKNE 219 Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +S+ GH+D P + NW LS RA S + L++ GVS R+ + G+A R Sbjct: 220 YQVSVEGHSDPVPIQTRQFASNWELSSSRATSVLRELVRDGVSAQRLRAV-GYAETRPIE 278 Query: 323 ASDP--MNSANRRIDILVE 339 ++D +ANRR++++++ Sbjct: 279 SNDTQAGRAANRRVELIMD 297 >gi|328554593|gb|AEB25085.1| flagellar motor protein MotS [Bacillus amyloliquefaciens TA208] Length = 206 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 15/188 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D K SI+ + P S + ++ LQ++ I + ++ + Sbjct: 25 DAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLLLQNVKTYIKTY-------HLSSKM 77 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + G+++ + + +F + L VL +I +L I + GHTD+ Sbjct: 78 TAKRDERGVVLVL---QEAVLFQTGKADVLKNAEPVLHQIAVLLKTLPNAIQVEGHTDSR 134 Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SAN 331 NW LS RA S + S R + G+A + + + N Sbjct: 135 RISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISV-GYADTKPVKDNKSIRHMKEN 193 Query: 332 RRIDILVE 339 RR++I+++ Sbjct: 194 RRVEIVIK 201 Score = 42.2 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 3/199 (1%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 + +AD +T+++ FF++++ ++ D + ++ + G AS +E + + Sbjct: 1 MVTFADLITLILVFFILLFSMSQIDAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLL 60 Query: 94 SQNKIDLSIDEHITKNSV---DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 QN H++ D + ++ L N++ H L + Sbjct: 61 LQNVKTYIKTYHLSSKMTAKRDERGVVLVLQEAVLFQTGKADVLKNAEPVLHQIAVLLKT 120 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + TD + + S ++ +D + K ++ Sbjct: 121 LPNAIQVEGHTDSRRISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISVGYADTKP 180 Query: 211 IVKGVLFETTRTGILISII 229 + + + I+ Sbjct: 181 VKDNKSIRHMKENRRVEIV 199 >gi|163858421|ref|YP_001632719.1| hypothetical protein Bpet4103 [Bordetella petrii DSM 12804] gi|163262149|emb|CAP44451.1| OmpA-family protein [Bordetella petrii] Length = 427 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L+ + D++V V E R S++ R +F+ S+ + + VL ++ + Sbjct: 275 RLAVFLAPEIRDDLV-TVRDEVDR-----SVVVLRGDGLFESGSAEVREQYLPVLSRVAD 328 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + I +RG+TD P R NW LS RA + ++L + R+ + G Sbjct: 329 ALRETQGNILVRGYTDNIPMRGARYPSNWHLSQARADAVKELLEARLDNPQRV-RAEGRG 387 Query: 317 HHRLKIASDP--MNSANRRIDILVE 339 +D S NRR++I + Sbjct: 388 DADPVAPNDTAAGRSRNRRVEITLM 412 >gi|328470797|gb|EGF41708.1| hypothetical protein VP10329_08362 [Vibrio parahaemolyticus 10329] Length = 430 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A++IS L+ + ++ V E + + IS+ Q +F+ S+ + V+ K Sbjct: 287 IAERISMYLATEIGKDL---VTVEALQDRVRISLRAQD---LFESGSASVVAYIQPVISK 340 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L + I I GHTD P + NW LSL RA S + L+ + + R+ Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLIANSALKGRVIP-E 399 Query: 314 GFAHHRLKIASD--PMNSANRRIDI 336 G R + +D + NRRI+I Sbjct: 400 GLGDARPLVENDSEENRAMNRRIEI 424 >gi|325105320|ref|YP_004274974.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324974168|gb|ADY53152.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 278 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 14/215 (6%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + + + + DL + +S + E L K + +K + + Sbjct: 59 KRDTAILNQKVNSLNGELADLRGNYSTLRSNSSSEINRLSEDLKRREQRLKEVEEMIRKR 118 Query: 197 KKISSTLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + S+ L + ++ KG+ E + +S+ D +F S + L Sbjct: 119 DEASNALKNKLQKALLGFQDKGLTVEMRDGKVYVSLTD---KLLFASGSIVIDERGKQAL 175 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-MKSGVSEDR 308 ++ +L E I++ GHTD N+ +DNW LS+ RA S + L + +S +R Sbjct: 176 HELAVILNTQPEINIAVEGHTDNQRVVNLGQIKDNWDLSVLRATSVVRFLTVDEKISPNR 235 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 I +G + + S NRRI+I++ + Sbjct: 236 IMA-TGKGEFQPISTDNSAESRSKNRRIEIVLSPK 269 >gi|149277137|ref|ZP_01883279.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39] gi|149232014|gb|EDM37391.1| outer membrane protein, OmpA family [Pedobacter sp. BAL39] Length = 280 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 95/215 (44%), Gaps = 14/215 (6%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 ++ K++ S + + ++ + NK + ++K KR++RL+++ + + Sbjct: 57 AKLRKDTTGLSSALNDMKNQYSRMDSNYNKLRSNSSSEINKLSQDLKKREQRLKEVEEIL 116 Query: 200 SSTLSGLVA-DNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVL 252 ++ L T++G+ + I + + +F S + + L Sbjct: 117 RKRDEATNQLKEKLQQALLGFTKSGLTVEIKNGKVYVSMTDKLLFPSGSIVIDEKGKQAL 176 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++ VL E I++ GHTD+ N+ +DNW LS+ R+ S + L + + V R Sbjct: 177 TQLATVLKQQPEINIAVEGHTDSQKITNLGQIKDNWDLSVLRSTSVVRYLTEVNKVESVR 236 Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 ++ +G + + A+ S NRRI+I++ + Sbjct: 237 MTA-TGKGEFQPLVSNANAEGRSKNRRIEIVLSPK 270 >gi|315186378|gb|EFU20138.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578] Length = 239 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 12/166 (7%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 ++++ +R + L + +S + K V + G++I++ F +S+ Sbjct: 74 VMSLPSMERGRALDQARKKAISAFQPEIRAKTVRVKQDERGLVITLAAD---AFFRSASA 130 Query: 243 IPL-PETIVVLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAY 296 L K+ +L I I GHTD P NW LS RA + Sbjct: 131 ELNIEAARETLIKLSNLLTSPELEGRKIRIEGHTDDVPTDPAGPWPSNWELSSARAINVL 190 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L GV E+ ++ G A + + NRRIDI++ Sbjct: 191 HFLSDYGVDENHF-QVMGLADTVPLADNSTPEGRAYNRRIDIVILS 235 Score = 42.9 bits (99), Expect = 0.064, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++KK D + + Y D +T+L+ FF++M+ D + I F G Sbjct: 1 MQKKKKCD---EGAPDYMLTYGDMVTLLLTFFVMMFTTATIDGYQLRLILSAFPGLGS 55 >gi|78485928|ref|YP_391853.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78364214|gb|ABB42179.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2] Length = 259 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 17/186 (9%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGI 224 SI++ + L + +K+++ + + + S LS ++ N + + Sbjct: 61 SISEIKQDKFETLQTNLGQGLLKKEKVVNPLQNLESALSKVLESNQINPAEAMTLNENEL 120 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA 281 I D +F+ S+ P++ ++ + + + I I GHTD +P +I Sbjct: 121 RI---DLPGELLFEVGSTQLEPKSKQLITALAKEINAFPLHNYLIEIEGHTDDTPIHSIR 177 Query: 282 -RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSA-NR 332 NW LS RA S +V +G+++ R+ I G+A R K + P N A NR Sbjct: 178 FPSNWELSAGRAISVLKVFFNTGINKQRLKAI-GYADTRPKKPNRTKKGIAIPGNQATNR 236 Query: 333 RIDILV 338 R++I V Sbjct: 237 RVEIKV 242 Score = 43.7 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 1 MNSHGDKN-----QENDQFIIIKK---KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMW 52 MN DK+ QE+ +F + K D W I YAD MT+++AFF+++ Sbjct: 1 MNDISDKDLADAIQEHPEFQKKTRASLKKQSVDKEGGQDEWLITYADAMTLILAFFILIL 60 Query: 53 IINATDDDTKKAI 65 I+ D + + Sbjct: 61 SISEIKQDKFETL 73 >gi|89093920|ref|ZP_01166865.1| OmpA/MotB [Oceanospirillum sp. MED92] gi|89081806|gb|EAR61033.1| OmpA/MotB [Oceanospirillum sp. MED92] Length = 265 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 99/243 (40%), Gaps = 15/243 (6%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD--- 162 +T V + + + R E + L+++ Q E NS+ + + + Sbjct: 24 MTLLLVFFVLLFSLSSVEVDRFEKAMRSLNDAFQGEDGANSVIELPHEAPVKTEVPEEIE 83 Query: 163 --LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 L + + P ++ + ++ + L +A ++S L + ++ + + Sbjct: 84 EVLPATNIADAEGEKPQENEAEFQDIELQTELNRMADEVSQELQAAINSDMAE--IGTPK 141 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279 ++IS+ + +FD S+ E + I ++ + + I GHTD P + Sbjct: 142 DGKLVISL---KGDVVFDPGSAEFHAEMMTTFDSIVLLMKKNPDYKLRINGHTDNIPIQT 198 Query: 280 IA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA + + +++ G+ +R++ +G+ ++ + NRR++ Sbjct: 199 TRFPSNWDLSAIRATNVLRYMVRGGIDLERVTA-TGYGESVPLESNRTLEGRAKNRRLEF 257 Query: 337 LVE 339 ++E Sbjct: 258 VLE 260 >gi|15639711|ref|NP_219161.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum str. Nichols] gi|189025949|ref|YP_001933721.1| flagellar motor protein MotB [Treponema pallidum subsp. pallidum SS14] gi|3024159|sp|O07887|MOTB_TREPA RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|2196896|gb|AAB61254.1| MotB [Treponema pallidum] gi|3323025|gb|AAC65689.1| flagellar motor rotation protein (motB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018524|gb|ACD71142.1| flagellar motor rotation protein [Treponema pallidum subsp. pallidum SS14] gi|291060088|gb|ADD72823.1| chemotaxis protein MotB [Treponema pallidum subsp. pallidum str. Chicago] Length = 238 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 11/158 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PET 248 ++ Q LA + +S + + + G++IS+ F SS E+ Sbjct: 81 EKGQKLATALKKAVSLFAPEIKSNKIAVTSDERGLVISLTSD---SFFYPGSSDLNVEES 137 Query: 249 IVVLQKIGEVLAH---STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304 L ++ + L+ + I GHTD+ + + DNW LS RA L G Sbjct: 138 REALLRVAQFLSDHALAGRRFRIEGHTDSVEVPEDGSTDNWELSTRRAVRVLHYLTDFGA 197 Query: 305 SEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 E+R ++G+A R K +++ + NRR+DI++ D Sbjct: 198 QENRF-SLAGYADTRAKFSNESPEGRAYNRRVDIVILD 234 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74 + +K W Y+D +T+++ FF++++ D ++I +P G Sbjct: 1 MARKRRAPRGAAQG--WLTTYSDMVTLMLCFFVMLFNPTEVDITVLQSIAASIVGDPTGG 58 Query: 75 NLMTASKGIFDEQN 88 + +S + D N Sbjct: 59 GVSASSGRLADLGN 72 >gi|149375611|ref|ZP_01893380.1| Flagellar motor protein [Marinobacter algicola DG893] gi|149360013|gb|EDM48468.1| Flagellar motor protein [Marinobacter algicola DG893] Length = 277 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + E K + DLA ++ L VA + + + Sbjct: 85 PEPMETAADEPEFIDERAEADAPTKIPAGVIDLASRMIQELEPEVA---SEALSVNYDES 141 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 ++I ++ F + P + +++++ EVL+ T + + G+TD P + Sbjct: 142 RVVIRFSEEAT---FRSGEAAIKPGMVPIIERVVEVLSGCTGDVLVAGYTDDRPIASGRY 198 Query: 283 -DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 NW LS RA S L+ V +R+ +G A + +D + NRR++I + Sbjct: 199 RSNWDLSAARAVSVVHELVMNRQVPAERVVA-AGRAETNPLVPNDSPENRAKNRRVEIAI 257 Query: 339 EDRQ 342 + Q Sbjct: 258 RNPQ 261 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 2/164 (1%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGK 74 ++++ V +W + +AD T+L+ FF+++ D + +A+ FG Sbjct: 2 VVRQPVKKKKHGRGSPAWIVTFADLATLLLTFFILLLSFAEMDVEKYRAMANSMAVAFGS 61 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 N + E + + + +D + + K + + + Sbjct: 62 NQVLGDAVGGSPLTLIESDTVSLPEPMETAADEPEFIDERAEADAPTKIPAGVIDLASRM 121 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 + E +L+ + ++ + + + ++ E + E P + Sbjct: 122 IQELEPEVASEALSVNYDESRVVIRFSE-EATFRSGEAAIKPGM 164 >gi|126649533|ref|ZP_01721774.1| flagellar motor protein MotB [Bacillus sp. B14905] gi|126593858|gb|EAZ87781.1| flagellar motor protein MotB [Bacillus sp. B14905] Length = 254 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 12/190 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D S + S N ++ +K ++ L ++ + + ++ + + Sbjct: 59 DGGTSFLEQPSPVPSPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIA---VNEMEGQF 115 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 E T G+L++I D +FD + PE I + +++ VL + I I GHTD Sbjct: 116 ATEMTDEGLLVTIRDS---ILFDPGQATIKPEYIPIAKELAGVLVSNPPRNIVITGHTDN 172 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSA 330 P N LSL RA + Y VL+ S + + S G+ +R +D + Sbjct: 173 VPAGPNFSSNLELSLMRASNFYMVLLDSNSQLKSENFSA-KGYGENRAIAPNDTAEGRAK 231 Query: 331 NRRIDILVED 340 NRR+++L++ Sbjct: 232 NRRVEVLIQP 241 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 52/144 (36%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 + SW + YAD +T+L+A F++++ ++ D + + + F+ + + Sbjct: 10 HDEHIDESWLVPYADILTLLLAVFIILFASSSVDQEKLERMSAVFSQVFDGGTSFLEQPS 69 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 +P S Q S + ++K N + +++ + Sbjct: 70 PVPSPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIAVNEMEGQFATEMTDEGLLVTIR 129 Query: 145 NSLTRDSEKGKDLCKSTDLEKSIN 168 +S+ D + + + K + Sbjct: 130 DSILFDPGQATIKPEYIPIAKELA 153 >gi|46906937|ref|YP_013326.1| chemotaxis protein MotB [Listeria monocytogenes serotype 4b str. F2365] gi|226223317|ref|YP_002757424.1| motility protein (flagellar motor rotation) MotB [Listeria monocytogenes Clip81459] gi|254993370|ref|ZP_05275560.1| motility protein (flagellar motor rotation) MotB [Listeria monocytogenes FSL J2-064] gi|255522318|ref|ZP_05389555.1| motility protein (flagellar motor rotation) MotB [Listeria monocytogenes FSL J1-175] gi|46880203|gb|AAT03503.1| chemotaxis protein MotB [Listeria monocytogenes serotype 4b str. F2365] gi|225875779|emb|CAS04482.1| Putative motility protein (flagellar motor rotation) MotB [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467255|gb|EGF38335.1| chemotaxis protein MotB [Listeria monocytogenes 1816] gi|328475649|gb|EGF46398.1| chemotaxis protein MotB [Listeria monocytogenes 220] Length = 275 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+++ + + + G+LI+I D Sbjct: 96 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265 >gi|16802728|ref|NP_464213.1| hypothetical protein lmo0686 [Listeria monocytogenes EGD-e] gi|224498768|ref|ZP_03667117.1| hypothetical protein LmonF1_03321 [Listeria monocytogenes Finland 1988] gi|224502009|ref|ZP_03670316.1| hypothetical protein LmonFR_05752 [Listeria monocytogenes FSL R2-561] gi|254830323|ref|ZP_05234978.1| hypothetical protein Lmon1_03142 [Listeria monocytogenes 10403S] gi|254900078|ref|ZP_05260002.1| hypothetical protein LmonJ_09695 [Listeria monocytogenes J0161] gi|255026595|ref|ZP_05298581.1| hypothetical protein LmonocytFSL_10100 [Listeria monocytogenes FSL J2-003] gi|284801016|ref|YP_003412881.1| hypothetical protein LM5578_0765 [Listeria monocytogenes 08-5578] gi|284994158|ref|YP_003415926.1| hypothetical protein LM5923_0720 [Listeria monocytogenes 08-5923] gi|5305456|gb|AAD41660.1| motility protein [Listeria monocytogenes] gi|16410075|emb|CAC98764.1| motB [Listeria monocytogenes EGD-e] gi|284056578|gb|ADB67519.1| hypothetical protein LM5578_0765 [Listeria monocytogenes 08-5578] gi|284059625|gb|ADB70564.1| hypothetical protein LM5923_0720 [Listeria monocytogenes 08-5923] Length = 275 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S ++ A+N+ + + + G+LI+I D Sbjct: 96 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265 >gi|255023068|ref|ZP_05295054.1| motility protein (flagellar motor rotation) MotB [Listeria monocytogenes FSL J1-208] Length = 275 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+++ + + + G+LI+I D Sbjct: 96 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENNEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265 >gi|330964668|gb|EGH64928.1| flagellar motor protein MotD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 295 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS RA S ++L G++ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARAASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|120552993|ref|YP_957344.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120322842|gb|ABM17157.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 277 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E S + ++ E+ + + DLA ++ L VA + + Sbjct: 85 PEPSESLQQQPEFIDERTERSETRQIPGGVLDLAGRLVRELEEEVA---SETLHVNYDED 141 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 ++I ++ F + PE I +++++ VL+ + + + GH+D P + Sbjct: 142 QVVIRFSEEAT---FRSGDATIKPEMIPIIERVVSVLSACSGDVVVSGHSDDRPISSSQY 198 Query: 283 -DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 NW LS RA S L+ + +R+ +G A R + + NRR++I + Sbjct: 199 RSNWDLSAARAVSVVHELVLNRDIPAERVVA-AGRAETRPLAPNTSPENRAINRRVEIAI 257 Query: 339 EDRQ 342 + + Sbjct: 258 RNPE 261 >gi|258611826|ref|ZP_05242458.2| chemotaxis protein MotB [Listeria monocytogenes FSL R2-503] gi|293596186|ref|ZP_05229035.2| chemotaxis protein MotB [Listeria monocytogenes FSL J1-194] gi|293596895|ref|ZP_05265393.2| chemotaxis protein MotB [Listeria monocytogenes HPB2262] gi|300764498|ref|ZP_07074491.1| chemotaxis protein MotB [Listeria monocytogenes FSL N1-017] gi|258606459|gb|EEW19067.1| chemotaxis protein MotB [Listeria monocytogenes FSL R2-503] gi|293583586|gb|EFF95618.1| chemotaxis protein MotB [Listeria monocytogenes HPB2262] gi|293593262|gb|EFG01023.1| chemotaxis protein MotB [Listeria monocytogenes FSL J1-194] gi|300514852|gb|EFK41906.1| chemotaxis protein MotB [Listeria monocytogenes FSL N1-017] gi|332311111|gb|EGJ24206.1| Chemotaxis protein MotB [Listeria monocytogenes str. Scott A] Length = 289 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N EKG D + K++ +++ Sbjct: 50 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 109 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+++ + + + G+LI+I D Sbjct: 110 TEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AEHLGAKMTTKYSDEGLLITIRD 166 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 167 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 223 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 224 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 279 >gi|120610159|ref|YP_969837.1| hypothetical protein Aave_1472 [Acidovorax citrulli AAC00-1] gi|120588623|gb|ABM32063.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 452 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 10/147 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++ L + + + E SI+ R +FD +S+ P + V+Q+I Sbjct: 284 KPRLRQFLEPEIREGL-----VEVNDQADR-SIVTLRGDGLFDPASTEVKPRYVAVIQRI 337 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + + + G++D P R NW LS +RA + +L ++ R+ + G Sbjct: 338 ASALNEVSGKVVVNGYSDNQPIRTARFPSNWHLSQERAQAVAAMLQRTIADGSRL-RAEG 396 Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339 A + + NRR++I++ Sbjct: 397 RAESDPIAPNSTPEGRALNRRVEIVLM 423 >gi|24213198|ref|NP_710679.1| flagellar motor protein [Leptospira interrogans serovar Lai str. 56601] gi|24193917|gb|AAN47697.1| flagellar motor protein [Leptospira interrogans serovar Lai str. 56601] Length = 223 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 10/180 (5%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +E + EK + + L+ + ++ + A ++ F + I I Sbjct: 30 EESKLENQRILGEKGDLSRSLEELKRIQEESDRRIQEYKA--LMSTFRFLIDAGKLKIKI 87 Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 ID R + +F S+ P ++++ +LA I GHTD +P Sbjct: 88 IDGRMVVVLSSDILFPIGSAHLSPAGTAAIKEVTTLLASLEGKRFQIEGHTDDTPTGIKG 147 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVED 340 NW L+ RA + ++K+G+ E RIS S A + P N S+NRRI+I++ Sbjct: 148 YTNWELASSRALNVLHTMIKAGMPEVRISAASMGASRPALPNTSPENRSSNRRIEIVIVP 207 >gi|47095252|ref|ZP_00232863.1| chemotaxis protein MotB [Listeria monocytogenes str. 1/2a F6854] gi|258611605|ref|ZP_05234030.2| chemotaxis protein MotB [Listeria monocytogenes FSL N3-165] gi|258612097|ref|ZP_05267393.2| chemotaxis protein MotB [Listeria monocytogenes F6900] gi|293596468|ref|ZP_05261381.2| chemotaxis protein MotB [Listeria monocytogenes J2818] gi|47016323|gb|EAL07245.1| chemotaxis protein MotB [Listeria monocytogenes str. 1/2a F6854] gi|258601756|gb|EEW15081.1| chemotaxis protein MotB [Listeria monocytogenes FSL N3-165] gi|258608279|gb|EEW20887.1| chemotaxis protein MotB [Listeria monocytogenes F6900] gi|293589306|gb|EFF97640.1| chemotaxis protein MotB [Listeria monocytogenes J2818] Length = 289 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171 + ++ E + N EKG D + K++ +++ Sbjct: 50 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 109 Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S ++ A+N+ + + + G+LI+I D Sbjct: 110 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 166 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 167 D---ILFQSGSAELSAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 223 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 224 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 279 >gi|312962248|ref|ZP_07776740.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gi|311283585|gb|EFQ62174.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 295 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 10/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+ +A IS+ L++ N + + I + ++ +F + ++P + + Sbjct: 101 LKSIADDISAAFGDLISSN-----QMTVRGNELWVEI-ELNSSLLFASADAMPSDQAFTI 154 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ +L + + G TD P NW LS RA S ++L GVS R++ Sbjct: 155 IDKVAAILKPFENPVHVEGFTDNVPISTAQYPTNWELSSARAASIVRMLAMQGVSPGRLA 214 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILV 338 + G+ + + + NRR+ ++V Sbjct: 215 SV-GYGEFQPVANNATVEGRARNRRVVLVV 243 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N W + YADF+T+L AFF+VM+ I++ ++ K I Q + Sbjct: 1 MSRRRREPEEHVNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALIGVFNDA 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 + K I + P + K ++ + Sbjct: 61 DRSLKPIPIGEERPRTVTPAKPLVNDSDETAAG 93 >gi|308174663|ref|YP_003921368.1| flagellar motor rotation protein [Bacillus amyloliquefaciens DSM 7] gi|307607527|emb|CBI43898.1| motility protein (flagellar motor rotation) [Bacillus amyloliquefaciens DSM 7] gi|328912997|gb|AEB64593.1| motility protein (flagellar motor rotation) [Bacillus amyloliquefaciens LL3] Length = 206 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 15/188 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D K SI+ + P S + ++ LQ++ I + ++ + Sbjct: 25 DAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLLLQNVKTYIKTH-------HLSSKM 77 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + G+++ + + +F + L VL +I +L I + GHTD+ Sbjct: 78 TAKRDERGVVLVL---QEAVLFQTGKADVLKNAEPVLHQIAVLLKTLPNAIQVEGHTDSR 134 Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SAN 331 NW LS RA S + S R + G+A + + + N Sbjct: 135 RISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISV-GYADTKPVKDNKSIRHMKEN 193 Query: 332 RRIDILVE 339 RR++I+++ Sbjct: 194 RRVEIVIK 201 Score = 42.6 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 3/199 (1%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 + +AD +T+++ FF++++ ++ D + ++ + G AS +E + + Sbjct: 1 MVTFADLITLILVFFILLFSMSQIDAEKFQSAVTSIHTNGSGGEPASSSKANENSEQDLL 60 Query: 94 SQNKIDLSIDEHITKNSV---DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 QN H++ D + ++ L N++ H L + Sbjct: 61 LQNVKTYIKTHHLSSKMTAKRDERGVVLVLQEAVLFQTGKADVLKNAEPVLHQIAVLLKT 120 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + TD + + S ++ +D + K ++ Sbjct: 121 LPNAIQVEGHTDSRRISTYQFPSNWELSSARAASVIRYFTAKEDFSAKRFISVGYADTKP 180 Query: 211 IVKGVLFETTRTGILISII 229 + + + I+ Sbjct: 181 VKDNKSIRHMKENRRVEIV 199 >gi|153837220|ref|ZP_01989887.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|260366108|ref|ZP_05778568.1| flagellar motor protein [Vibrio parahaemolyticus K5030] gi|260879749|ref|ZP_05892104.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034] gi|260896795|ref|ZP_05905291.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466] gi|260903584|ref|ZP_05911979.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037] gi|149749483|gb|EDM60237.1| flagellar motor protein [Vibrio parahaemolyticus AQ3810] gi|308087342|gb|EFO37037.1| flagellar motor protein [Vibrio parahaemolyticus Peru-466] gi|308092264|gb|EFO41959.1| flagellar motor protein [Vibrio parahaemolyticus AN-5034] gi|308109501|gb|EFO47041.1| flagellar motor protein [Vibrio parahaemolyticus AQ4037] gi|308114754|gb|EFO52294.1| flagellar motor protein [Vibrio parahaemolyticus K5030] Length = 430 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A++IS L+ + ++ V E + + IS+ Q +F+ S+ + V+ K Sbjct: 287 IAERISMYLATEIGKDL---VTVEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 340 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L + I I GHTD P + NW LSL RA S + L+ + + R+ Sbjct: 341 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIP-E 399 Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336 G R + +D + NRRI+I Sbjct: 400 GLGDARPLVENDSEKNRAMNRRIEI 424 >gi|95930659|ref|ZP_01313393.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] gi|95133311|gb|EAT14976.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] Length = 303 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 110/305 (36%), Gaps = 22/305 (7%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 ++ F ++ T + +L ++ + + Q + Q D Sbjct: 9 IIGLFALLSTSGCVSKATYQQQLDQNQTLQTDLYGTTEKLNNLQARYDIVEQQLEDAMAQ 68 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 + + ++ K + + S + + + ++ + + D Sbjct: 69 NRALNDQNIAAMAEIDRLKNIFQARSQQQQEQLSALEQQQQELEAQQEQQQQRYQQLLDN 128 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 ++ + +E + R+ RL +A +S ++ L + + + Sbjct: 129 KQQLEQELER----------ERIAREARLAKMANTYNSLVANLEQEIERGEITINKLKDK 178 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI-- 280 + +++++ +F S+ P I V++++G++L + I + GHTD Sbjct: 179 LTVNLVE---KILFPSGSADLTPAGIKVIRQVGDILKEVDDKDIRVEGHTDNLGISKALQ 235 Query: 281 --ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 NW LS RA + +VL + G+ +++ I + ++D + NRRI Sbjct: 236 AKFPSNWELSAARAANVVRVLQREVGIPGEKLE-IGAYGPFHPVSSNDTPEGRAQNRRIQ 294 Query: 336 ILVED 340 I++ Sbjct: 295 IVLVP 299 >gi|307718609|ref|YP_003874141.1| hypothetical protein STHERM_c09210 [Spirochaeta thermophila DSM 6192] gi|306532334|gb|ADN01868.1| hypothetical protein STHERM_c09210 [Spirochaeta thermophila DSM 6192] Length = 243 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 12/166 (7%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 ++++ +R + L + +S + K V + G++I++ F +S+ Sbjct: 78 VMSLPSMERGRALDQARKKAISAFQPEIRAKTVRVKQDERGLVITLAAD---AFFRSASA 134 Query: 243 IPL-PETIVVLQKIGEVLAH---STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAY 296 L K+ +L I I GHTD P NW LS RA + Sbjct: 135 ELNIEAARETLIKLSNLLTSPELEGRKIRIEGHTDDVPTDPAGPWPSNWELSSARAINVL 194 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L GV E+ ++ G A + + NRRIDI++ Sbjct: 195 HFLSDYGVDENHF-QVMGLADTVPLADNSTPEGRAYNRRIDIVILS 239 Score = 42.9 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 ++KK D + + Y D +T+L+ FF++M+ D + I F G Sbjct: 5 MQKKKKCD---EGAPDYMLTYGDMVTLLLTFFVMMFTTATIDGYQLRLILSAFPGLGS 59 >gi|296114560|ref|ZP_06833213.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC 23769] gi|295978916|gb|EFG85641.1| hypothetical protein GXY_02241 [Gluconacetobacter hansenii ATCC 23769] Length = 321 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 117/321 (36%), Gaps = 26/321 (8%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +W T+LM V+ + ++ + + + E Sbjct: 16 AWPGYVDALSTLLMVIIFVLLVF--VLGQAFLSVALNKRQQVLDQLQREVAHLSQMLSLE 73 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +S + ++ S+ +++ D ++ + Q+ Q++ N L + S Sbjct: 74 QSHNHSLEQSVATLQKEHAADEATTTSLTAQVSQQAAERDDAR---HQADELNNQLAQLS 130 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADN 210 + + + ++ ++ + + L L + +A+ +K ++LQ + L ++ D Sbjct: 131 AQLAAVSTALEISQNEVHDRDRKLDNLGMQLNIALAQKVEQLQRYRSEFFGRLRDVLKDT 190 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-------- 262 V+ + ++ +F S+ PE I ++ +G L Sbjct: 191 KGIQVVGDR---------FVFQSEVLFPVGSADLSPEGIQEIKVLGRTLKQVAQQIPPSV 241 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 ++ + GH D P NW LS RA + ++L+ G+S R +GFA + Sbjct: 242 PWILRVDGHADRLPIHTAFPSNWELSSARAITVVKMLIADGISP-RHLAATGFADFQPLD 300 Query: 323 ASDPMN--SANRRIDILVEDR 341 + NRRI+ + DR Sbjct: 301 NGTTAEAFARNRRIEFRLTDR 321 >gi|254500358|ref|ZP_05112509.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222436429|gb|EEE43108.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 344 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 111/326 (34%), Gaps = 22/326 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 + D M L+ + + I + L + + SS Sbjct: 20 FVDAMATLLLVIIFLLSIFMIAQFFLSQQLSGRDTVLNRLNAQISELTELLALERASSGE 79 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 D + + +S + + + + +Q + E Sbjct: 80 LEDTILGLQASLSSAEAEQSRLLGLLESSSGDAEAAGGRAAQLENLLDDERQVSQEALAQ 139 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------- 209 + ++ ++ L + + + ++ L +++++ L V + Sbjct: 140 VELLNQQIAALRRQIAAANAALEASEAKEAESQAKIASLGRRLNAALVQRVQELSRYRSD 199 Query: 210 --NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI- 266 ++ +L + + ++ ++ +FD S PE L K+ E + + I Sbjct: 200 FFGRLREILSQRSDISVVGDRFVFQSEVLFDSGSEDINPEGQQELDKLAEAILELSGQIP 259 Query: 267 -------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + GHTDA P R +NW LS RA S + L++ GV R+ +GF Sbjct: 260 DEINWVLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRYLIEKGVDPKRLVA-AGFGE 318 Query: 318 HRLKIASDPMN--SANRRIDILVEDR 341 + S+ + + NRRI++ + +R Sbjct: 319 FQPLEESETPDALAKNRRIELKLTER 344 >gi|28900895|ref|NP_800550.1| hypothetical protein VPA1040 [Vibrio parahaemolyticus RIMD 2210633] gi|28809341|dbj|BAC62383.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 433 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A++IS L+ + ++ V E + + IS+ Q +F+ S+ + V+ K Sbjct: 290 IAERISMYLATEIGKDL---VTVEALQDRVRISLKAQD---LFESGSASVVAYIQPVISK 343 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L + I I GHTD P + NW LSL RA S + L+ + + R+ Sbjct: 344 VARTLEATQGKIIITGHTDDRPIFTSKYPSNWHLSLARATSLSEQLISNSALKGRVIP-E 402 Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336 G R + +D + NRRI+I Sbjct: 403 GLGDARPLVENDSEKNRAMNRRIEI 427 >gi|229591826|ref|YP_002873945.1| flagellar motor protein MotD [Pseudomonas fluorescens SBW25] gi|229363692|emb|CAY51066.1| putative chemotaxis protein [Pseudomonas fluorescens SBW25] Length = 297 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 10/195 (5%) Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 + D+++ + + + L+ +A IS+ L Sbjct: 58 VFNDADRALKPIPIGEERPKTVTPAKPLVNDSDETAAGVGGTSDPLKSIADDISAAFGDL 117 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 ++ N + + I + ++ +F + ++P + ++ K+ +L I Sbjct: 118 ISSN-----QMTVRGNELWVEI-ELNSSLLFASADAMPSDQAFTIIDKVASILRPFENPI 171 Query: 267 SIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + G TD P NW LS RA S ++L GV+ R++ + G+ + + Sbjct: 172 HVEGFTDNFPINTAQYPTNWELSSARAASIVRMLAMQGVNPGRLASV-GYGEFQPVANNA 230 Query: 326 P--MNSANRRIDILV 338 + NRR+ ++V Sbjct: 231 TVEGRARNRRVVLVV 245 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 42/93 (45%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + N W + YADF+T+L AFF+VM+ I++ ++ K I Q + Sbjct: 3 VSRRRREPEEHVNHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISQALIGVFNDA 62 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 A K I + P+ + K ++ + Sbjct: 63 DRALKPIPIGEERPKTVTPAKPLVNDSDETAAG 95 >gi|77457796|ref|YP_347301.1| flagellar motor protein MotD [Pseudomonas fluorescens Pf0-1] gi|77381799|gb|ABA73312.1| putative chemotaxis protein [Pseudomonas fluorescens Pf0-1] Length = 296 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 6/169 (3%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 PL K+ D K I+ +S D I + + + I + Sbjct: 77 TPAKPLVKDAEQVDAGIAGASDPLKSIADDISAAFGDLISSNQMTVRGNE-LWVEI-ELN 134 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARD-NWRLSLDR 291 ++ +F ++P ++ K+ +L I + G TD P R NW LS R Sbjct: 135 SSLLFGSGDAMPSDIAFNIIDKVAAILKPFDNPIHVEGFTDDQPIRTAQYPTNWELSSAR 194 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + S ++L GV+ R++ + G+ + + + NRR+ ++V Sbjct: 195 SASIVRMLAMQGVNPGRLASV-GYGEFQPVANNATAEGRAKNRRVVLVV 242 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K I + + Sbjct: 3 RRRQHEEHVNH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKIISEALIGVFTDSD 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHI 106 A K I + P+ + K + E + Sbjct: 61 RALKPIPIGEERPKTVTPAKPLVKDAEQV 89 >gi|224370727|ref|YP_002604891.1| MotB3 [Desulfobacterium autotrophicum HRM2] gi|223693444|gb|ACN16727.1| MotB3 [Desulfobacterium autotrophicum HRM2] Length = 272 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 + IS+ FD + P+ L++IG +L ++ V+++ GHTD P Sbjct: 133 VADRAVRISL---AGDLFFDLGKADLKPQAQWRLRQIGRILQENSFVVNVIGHTDDMPNH 189 Query: 279 NIARD-NWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 + NW LS RA + L+K + E+R +SG A + ++ S NRR+ Sbjct: 190 SEQYPTNWELSTARACRVARFLIKEAQLPEERFF-VSGHAWLQPLRPNNTAHNRSLNRRV 248 Query: 335 DILVEDRQ 342 +I++ + Sbjct: 249 EIVLMKER 256 >gi|254473145|ref|ZP_05086543.1| OmpA/MotB [Pseudovibrio sp. JE062] gi|211957866|gb|EEA93068.1| OmpA/MotB [Pseudovibrio sp. JE062] Length = 344 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 113/330 (34%), Gaps = 30/330 (9%) Query: 37 YADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 + D M+ L+ F+ + I ++ N + + ++ + E+ Sbjct: 20 FVDAMSALLLVFIFLLSIFMIAQFFLSQQLSGRDKVLNRLNQQIAELTELLALEKANVGD 79 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 L + D G N++ ++ S ++ Sbjct: 80 LESTISSLQLGLEQASGERDRLQGLLNERSGQIDEAGGALAALQAKLEGEQNISSKALAQ 139 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--- 209 + + L + I E+ +++ + + R+ DL K+++ L+ V + Sbjct: 140 VELLNQQISALRRQIAVLEDALDASEKRDR----ESQTRIADLGKRLNVALAQRVQELSR 195 Query: 210 ------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 ++ +L + + ++ ++ +F P+ L + + Sbjct: 196 YRSDFFGRLREILAQRSDIEVVGDRFVFQSEVLFSSGDEEVNPQGRNQLDILASAILELE 255 Query: 264 EVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I + GHTDA P R DNW LS RA S + L+ GV DR+ + Sbjct: 256 GQIPDEINWVLRVDGHTDARPLSGTGRLRDNWELSAARAISVVKYLISKGVEPDRLVA-A 314 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDR 341 GF + +D + NRRI++ + R Sbjct: 315 GFGEFQPLEEGTTDEAYAKNRRIELKLTQR 344 >gi|182418680|ref|ZP_02949956.1| chemotaxis protein MotB [Clostridium butyricum 5521] gi|237669705|ref|ZP_04529682.1| chemotaxis protein MotB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377457|gb|EDT75012.1| chemotaxis protein MotB [Clostridium butyricum 5521] gi|237654779|gb|EEP52342.1| putative chemotaxis MotB protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 248 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 10/178 (5%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGIL 225 + + N +P + + QD I + + + ++ + + G+ Sbjct: 63 MQSDGNSIIPMDTISDGTGKSDAELEQDKMVAIKAVMEEEITSEGYSDAINVDINEEGLY 122 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DN 284 I++ D +FD + I +L K+ +L I I GHTD P N N Sbjct: 123 ITVQD---VALFDSGKADIHQNVIPLLSKVSAMLNGLENEIKIVGHTDNVPIDNSEFHSN 179 Query: 285 WRLSLDRAYSAYQVLM--KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 LS +RA + +L+ ++G+ ++ + I + + K ++D + NRR++I+V Sbjct: 180 MDLSAERAINVRSLLVNSENGLDPEK-TSIEAWGELKPKASNDTEQGRAQNRRVEIVV 236 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF--GKNLM 77 + + +W + Y+D +T+L+A F+VM+ + TD +A+ + FN G M Sbjct: 3 RKKQHHEEHVDEAWLLPYSDMLTLLLALFIVMFAMGQTDKAKFQAMSKSFNQIFSGGTSM 62 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEH 105 S G K D +++ Sbjct: 63 MQSDGNSIIPMDTISDGTGKSDAELEQD 90 >gi|303240000|ref|ZP_07326522.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] gi|302592479|gb|EFL62205.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] Length = 261 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 11/174 (6%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 E N S ++K + + +++ + +SGL D V V +T+ +I I Sbjct: 94 ETNNESKSGSNADYDTENKQKAITEFKEEVQALISGLKIDEYVHVVDVKTS----VILRI 149 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLS 288 D +FD + L+K+GE++ I++ GHTD P ++ NW LS Sbjct: 150 DS--AILFDVGKADIKESGKDTLKKVGELMDKLNTNIAVMGHTDNIPINTSLFPSNWELS 207 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 RA + L+ ++ +++ +G R +D NRR+DI+++ Sbjct: 208 TRRATNVVVFLVNECNLNPTKLTA-TGNGEFRPIAPNDSEENRQKNRRVDIVID 260 >gi|114778393|ref|ZP_01453240.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] gi|114551356|gb|EAU53913.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] Length = 251 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 13/183 (7%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 S + P I +K+ ++D ++I L ++++ + + Sbjct: 70 KMQAPSSPQNTTSEGTPVSDNATIQRQGQKEGMEDNMRRI------LGSNSLGGVMDVKM 123 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 + I + + +F S + + L+ + +VL T I + GH+D++P Sbjct: 124 SPGQIRLQM---DAALLFKPGQSELDESSRIPLKNLAKVLQTYTGKIEVAGHSDSTPLAG 180 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA + + L+ G+ R+ +G+A R ++ + NRR++ Sbjct: 181 RGYQSNWELSTMRATAVVKALIDFGIEPGRLHA-AGYADTRPLASNATAEGRAKNRRVEF 239 Query: 337 LVE 339 +E Sbjct: 240 TIE 242 >gi|169825896|ref|YP_001696054.1| chemotaxis protein motB [Lysinibacillus sphaericus C3-41] gi|168990384|gb|ACA37924.1| Chemotaxis protein motB (Motility protein B) [Lysinibacillus sphaericus C3-41] Length = 235 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 12/190 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D S + + N ++ +K ++ L ++ + + ++ + + Sbjct: 40 DGGTSFLEQPAPVPSPNADSDQTPQQNSAYLKDQQELAEIKDSVDNFIA---VNEMEGQF 96 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 E T G+L++I D +FD + PE I + +++ +VL + I I GHTD Sbjct: 97 ATEMTDEGLLVTIRDS---ILFDPGQATIKPEYIPIAKELADVLVSNPPRNIVITGHTDN 153 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSA 330 P N LSL RA + Y VL+ S + + S G+ +R +D + Sbjct: 154 VPAGPNFSSNLELSLMRASNFYMVLLDSNSQLKSENFSA-KGYGENRAIAPNDTAEGRAK 212 Query: 331 NRRIDILVED 340 NRR+++L++ Sbjct: 213 NRRVEVLIQP 222 Score = 41.4 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 49/135 (36%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94 + YAD +T+L+A F++++ ++ D + + + F+ + + +P S Sbjct: 1 MPYADILTLLLAVFIILFASSSVDQEKLERMSAVFSQVFDGGTSFLEQPAPVPSPNADSD 60 Query: 95 QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154 Q S + ++K N + +++ ++S+ D + Sbjct: 61 QTPQQNSAYLKDQQELAEIKDSVDNFIAVNEMEGQFATEMTDEGLLVTIRDSILFDPGQA 120 Query: 155 KDLCKSTDLEKSINK 169 + + K + Sbjct: 121 TIKPEYIPIAKELAD 135 >gi|326798978|ref|YP_004316797.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326549742|gb|ADZ78127.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 269 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 NQ + +++N+ ++ + R + ++L S+ K + L Sbjct: 40 NQGWRTAQIKNDNLEDELAKLRADTASLGRRLASLEENLSSSSSEAKKLAANLAEREERL 99 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + + KR++ L K+ L G G+ + + + + D +F Sbjct: 100 KEVEDVLRKREEAGNQLKDKLQRALLGFKE----SGLTVDMREGKVYVLLAD---KLLFS 152 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSA 295 S I L ++ +VL E +++ GHTD R++ +DNW LS+ R+ S Sbjct: 153 SGSIIIDQRGKQALAELAKVLNTQPEINMAVEGHTDNQKVRSLGQIKDNWDLSVLRSTSV 212 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + L + G+ R+ +G +D SANRRI+I++ + Sbjct: 213 VRYLTEEEGIDPKRLIA-TGKGEFTPVDTADTPEARSANRRIEIVLSPK 260 >gi|205374484|ref|ZP_03227280.1| flagellar motor protein MotS [Bacillus coahuilensis m4-4] Length = 211 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 11/181 (6%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + + E + ++E + K+ L L +I L +++ Sbjct: 32 ENPSASPEVEKEDDMVQKELEDNDAPPNTDAGEPQTKEELDQLLDEIQQYLDENKLNDVA 91 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + T G+++ + +Q +F +++ + + L K+ E+L+ +I I GHT Sbjct: 92 ---VASRTERGVVLVLQEQ---VLFQSGNAVIISDAYPFLDKVAELLSSIPNMIKIEGHT 145 Query: 273 DASPFR-NIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA 330 D P ++ NW LS R+ + + + + R + G+ R +D ++ Sbjct: 146 DNRPISTSVFPSNWELSAARSSGVIRYFISNHQLDPTRFIAV-GYGDTRPLAPND--SAE 202 Query: 331 N 331 N Sbjct: 203 N 203 >gi|146298593|ref|YP_001193184.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153011|gb|ABQ03865.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 314 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 126/300 (42%), Gaps = 13/300 (4%) Query: 49 LVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK 108 LV+ ++AT +KK I +L ++ I D +N + ++N+++L D+ +TK Sbjct: 9 LVVLALSATSCVSKK-IYNDLETKYSDLKKENRSIAD-ENADLKKAKNQLELDRDK-LTK 65 Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKS 166 + K QK + L +S + ++ ++L ++ K ++L + + Sbjct: 66 DLASTKDDLAKQKADLAAEQKKYKVLQDSYNALEKNSNDALEKNMAKNRELLAQLEAKGK 125 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 +E L + ++ +K+ TLS + KG+ E + + Sbjct: 126 ALADEQARLDKTASRLKELEDMIAAKEEAMRKLKETLSKALTGFEGKGLTVEHKNGKVYV 185 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR--D 283 S+ N +F+ S E + ++G+VL + + + I GHTD P+ + Sbjct: 186 SM---ENKLLFNSGSWAVGTEGRRAVVELGKVLGDNPDLSVLIEGHTDDDPYAGSGPIAN 242 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 NW LS RA + +L ++ + +G + ++ + NRRI+I++ R Sbjct: 243 NWDLSTKRATAIVAILSENPKINKQKLTAAGRSEFSPLASNATPEGKAKNRRIEIILTPR 302 >gi|116332026|ref|YP_801744.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125715|gb|ABJ76986.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 224 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 10/180 (5%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +E + +EK+ + L+ + ++ + ++ + I I Sbjct: 31 EESKLENQRILEEKVNLSRSLNELKRIQEESELRIQEY--KRLIATFRSLIDAGKLKIKI 88 Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 ID R + +F S+ I ++++ +LA I GHTD +P Sbjct: 89 IDGRMVVVLSSDILFPVGSAFLSSAGIASIREVTTLLASLGGKRFQIEGHTDDTPTGIKG 148 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRIDILVED 340 NW L+ RA + ++K+G+ E+RIS S A + P SANRRI+I++ Sbjct: 149 YTNWELASSRALNVLHTMIKAGMPEERISAASMGASRPALPNTSPENRSANRRIEIVIVP 208 >gi|27376621|ref|NP_768150.1| hypothetical protein bll1510 [Bradyrhizobium japonicum USDA 110] gi|27349762|dbj|BAC46775.1| flagellar motor protein [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 53/341 (15%), Positives = 107/341 (31%), Gaps = 21/341 (6%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTV---LMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 + D N + + + L++ FLV+ + + K + N Sbjct: 5 RGRRSDGAFNYWPGFVDALSTLVLSIVFLLSVFLVVQFFLSQEVSGKDKALEQLNAKIAQ 64 Query: 76 LMTASK----GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 L G + + + K D + N + Sbjct: 65 LNELLSLEKLGKLTLDDQVSQLKAGLASAESERDRIKGLYDGLAAAGNDAQGKSTELGKA 124 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + + + + LE++++ E ++ L + Sbjct: 125 LDSEKAVSARALAQIEVLNQQISALRRQLAALEEALDASEKRDKESQNRIADLGSRLNVA 184 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L +++S S ++ +L ++ ++ FD + LPE Sbjct: 185 LAQRVQELSRYRSEFFGR--LRAILGNRPDIRVVGDRFVFQSEVFFDTGQATLLPEGRAE 242 Query: 252 LQKIGEVLAHSTEVI--------SIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS 302 L + L + I + GHTD P + NW LS RA S Q L+ Sbjct: 243 LDTVANALIELDKKIPAEIAWVLRVDGHTDVRPVSGASFKSNWDLSAARAISVVQYLISL 302 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 GV R+ +GF + ++ ++ NRRI++ + +R Sbjct: 303 GVPAQRLVA-AGFGEFQPLDTANTEDAYKRNRRIELKLTER 342 >gi|149919675|ref|ZP_01908153.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1] gi|149819446|gb|EDM78876.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1] Length = 262 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 19/239 (7%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 + + + ++ + + + E +N + + R +E ++ + K + Sbjct: 23 DELQAALDASQAELKKTQKELEAERQANVELEAENQTLQERIAELEAEIEQLERQIKDLA 82 Query: 169 KEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTL-SGLVADNIVKGVLFETTRTGI 224 ++ L++ + KR+ LQ DL + + +G + +G L GI Sbjct: 83 EKAGLTEKELAELRAEKAKREAELQVYRDLFASLKKMVDAGTIKVGFREGRLVVKLDEGI 142 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARD 283 +FD + E L ++ L + GHTD P + + Sbjct: 143 -----------LFDSGRAKLKKEGQAALTELIAPLRDVNRDWIVAGHTDNVPIKTAKFQS 191 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 NW LS RA L+ +G+ +RI +G+A + + NRRI+I++ Sbjct: 192 NWELSSARAVEVVTFLIDTGMPAERIGS-AGYAEFDPVADNSSPEGRAQNRRIEIVLMP 249 >gi|294085848|ref|YP_003552608.1| flagellar motor protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665423|gb|ADE40524.1| flagellar motor protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 389 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 99/262 (37%), Gaps = 21/262 (8%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L D N + ++ I S+ N + ++ + Sbjct: 125 LQSDTETALNDAQKNLAEREEQLHIVEGTLAIADARAKTDSQTIDNLKAETNASRAEIAQ 184 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------N 210 T+ ++ + L++++ A K K + +L K +++ L+ V + Sbjct: 185 MTNALAALKAQLESLQNLLAEKEAQATKDKIAIANLGKSLNNALASRVQELQRFRSEFFG 244 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP----LPETIVVLQKIGEVLAHSTEVI 266 ++ +L I+ ++ +F + + + + E+ + I Sbjct: 245 RLRDILKGRNDVQIVGDRFVFQSEVLFAPGQADIGDSGREQMTKLAVALAEIAREIPDDI 304 Query: 267 S----IRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + GHTD P R DNW LS +RA S + L+ G+ +R++ +G+ H+ Sbjct: 305 NWVLQVDGHTDDIPIRAGRYADNWDLSTERALSVVRFLISQGLPPNRLAA-TGYGEHQPL 363 Query: 322 IASDPMNSA--NRRIDILVEDR 341 I + ++ NRRI++ + R Sbjct: 364 INENSEDARQKNRRIELKITQR 385 >gi|317407354|gb|EFV87320.1| OmpA-family protein [Achromobacter xylosoxidans C54] Length = 332 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291 N +F + P + V++++ +L + +S+ GH+D P + NW LS R Sbjct: 187 NELLFPSGQATLSPSGLDVIKRLAAILNKNDYQVSVEGHSDPVPIQTRQFASNWELSSSR 246 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 A S + L++ GV+ R+ + G+A R ++D +ANRR++++++ Sbjct: 247 ATSVLRELVRDGVAGSRLRAV-GYAETRPIESNDTPAGRAANRRVELIMD 295 >gi|255530239|ref|YP_003090611.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343223|gb|ACU02549.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 280 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 94/215 (43%), Gaps = 14/215 (6%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 ++ K++ S + ++++ + +K + ++K KR++RL+++ + + Sbjct: 57 AKLRKDTTGLSSALNDMKSRYSEMDNNYSKLRSNSSTEINKLSADLKKREQRLKEVEEIL 116 Query: 200 SSTLSGLVA-DNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVL 252 ++ L T++G+ + I + + +F S I + L Sbjct: 117 RKRDEATNKLKEKLQQALLGFTQSGLTVEIKNGKVYVSLTDKLLFPSGSIIIDEKGKQAL 176 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 ++ +VL E I++ GHTD+ N+ +DNW LS+ R+ S + L + V R Sbjct: 177 TQLADVLKQQPEINIAVEGHTDSQKITNLGQIKDNWDLSVLRSTSVVRFLTEICKVQPVR 236 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 ++ +G + + S NRRI+I++ + Sbjct: 237 MTA-TGKGEFQPLGPNTSAESRSKNRRIEIVLSPK 270 >gi|94264078|ref|ZP_01287877.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93455494|gb|EAT05684.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 235 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ K I L + V E IL+ I D FD + + +L Sbjct: 67 EVRKPIQQVFEDLQEAGL---VTVEDQEEEILVRIQD---AVAFDTGRAEIKGDFRELLD 120 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 ++GE++ S + + GHTD P R A NW LS RA + + L+ + + DR++ Sbjct: 121 QLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRDRLA 180 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ A + +D +ANRR++ + + Sbjct: 181 AVA-HADGKPVATNDTAEGRAANRRVEFRIRPGE 213 >gi|116872075|ref|YP_848856.1| chemotaxis (flagellar motor rotation) protein MotB [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740953|emb|CAK20073.1| chemotaxis (flagellar motor rotation) protein MotB [Listeria welshimeri serovar 6b str. SLCC5334] Length = 275 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 94/237 (39%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E + N KG D + K++++++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKGKGPDDPNVNAVLKAMDEQDKKKDA 95 Query: 177 PLSKEKILAM------KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ A + +++++ K+I S ++ A+ + + + + G+LI+I D Sbjct: 96 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AERLGAKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 265 >gi|315281340|ref|ZP_07869986.1| chemotaxis protein MotB [Listeria marthii FSL S4-120] gi|313615016|gb|EFR88514.1| chemotaxis protein MotB [Listeria marthii FSL S4-120] Length = 275 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 95/237 (40%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE----- 171 + ++ E + N EKG D + K++ +++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEA 95 Query: 172 -NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S ++ A+N+ + + + G+LI+I D Sbjct: 96 NEQEKAKKAAAALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRL 287 +F S+ + ++IGE+ A + + GHTD P +I NW L Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ R +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAVNREKNRRVEIMVRP 265 >gi|66046660|ref|YP_236501.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae B728a] gi|63257367|gb|AAY38463.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|330972462|gb|EGH72528.1| flagellar motor protein MotD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 295 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 SI E + + LQ +A+ + +++K + Sbjct: 75 SIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIVPNTSTAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|330899454|gb|EGH30873.1| flagellar motor protein MotD [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940674|gb|EGH43692.1| flagellar motor protein MotD [Pseudomonas syringae pv. pisi str. 1704B] gi|330976021|gb|EGH76087.1| flagellar motor protein MotD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 295 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIVPNTSTAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|225012121|ref|ZP_03702558.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225003676|gb|EEG41649.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 90/235 (38%), Gaps = 12/235 (5%) Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 G + + + + + + +NS + E + Sbjct: 61 QETEGYLQRSRDSVSEGLSQLKILRKEYALLEQNSDQKIQESIGANNALLKEIAVKEAQL 120 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + + ++L ++K+ L +L K++S L KG+ E + IS+ Sbjct: 121 LARSERVDQLELLMSEQKEALLELKKRLSDALLNFEG----KGLTVEQRNGKVYISM--- 173 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLS 288 N +F S + L ++G VLA + + V+ I GHTD PF NW LS Sbjct: 174 ENKLLFKSGSWNVGSQGQEALGQLGTVLAENPDIVVVIEGHTDNVPFSPKEALESNWDLS 233 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 RA + ++L+ + + +G + + ++ + NRRI+I++ + Sbjct: 234 TKRATAVVKILLNNESVLPQNLTAAGRSEYVPIAPNNNATGRAVNRRIEIILSPQ 288 >gi|134292850|ref|YP_001116586.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134136007|gb|ABO57121.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 226 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A R L +++ + L+ L A + GI I I +F+ + Sbjct: 71 AAARGTAAVTLPERVPAWLASLDALKTAGRIALVRAPHGIEIGI---DAKVLFNVGDARL 127 Query: 245 LPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 LP+ VL +I L+ H++ I + GHTD P N NW LS RA S + L + Sbjct: 128 LPDAAPVLTQIARALSEHASGDILVEGHTDNVPIANAKYESNWELSSARAGSVVRYLAER 187 Query: 303 GVSEDRISKISGFAHHRLKIASD 325 GV+ R++ I G A + + D Sbjct: 188 GVAPHRLAAI-GRADTQPLVTGD 209 Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN 55 + G W I YAD +T LM FL ++++ Sbjct: 20 DEGDDAQTGRWLISYADLITTLMVLFLALYVLQ 52 >gi|328958204|ref|YP_004375590.1| flagellar motor protein MotB [Carnobacterium sp. 17-4] gi|328674528|gb|AEB30574.1| flagellar motor protein MotB [Carnobacterium sp. 17-4] Length = 249 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 11/140 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---I 266 + V G+++S D FD ++ + IG++L I Sbjct: 105 ELNDSVTTSIEERGLVLSFND---ALFFDSGNAEIKADQQNKFVDIGKLLNQPALKDSFI 161 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--I 322 + G+TD+ P N NW LS+ RA + Q+++ SG++ +R+ + G+ +R K Sbjct: 162 RVEGYTDSVPVSNPKYKSNWDLSVLRASNVAQIIINDSGINPNRV-SVVGYGEYRPKSDN 220 Query: 323 ASDPMNSANRRIDILVEDRQ 342 ++ NRR+DIL+ + + Sbjct: 221 KTNEGRVENRRVDILILNSE 240 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 4/140 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN----PFG 73 ++ ++ P N W + YADF+T+LM FF++M+ ++ D + F+ G Sbjct: 3 RRNKKHEEEPENHERWLLSYADFITLLMIFFIIMYSMSEMDKSKYNELASVFSMEMGGGG 62 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 ++ D +N + + + + T ++ + + Sbjct: 63 TGILEGESKSGDGENSKGSTELTEEEQQEEVKETIDAYIDTSELNDSVTTSIEERGLVLS 122 Query: 134 LSNSQQSEHCKNSLTRDSEK 153 +++ + + D + Sbjct: 123 FNDALFFDSGNAEIKADQQN 142 >gi|261380420|ref|ZP_05984993.1| OmpA family protein [Neisseria subflava NJ9703] gi|284796655|gb|EFC52002.1| OmpA family protein [Neisseria subflava NJ9703] Length = 411 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 15/182 (8%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++ S+ + N ++ K+ ++ K++ ++ L +A + V E + Sbjct: 217 MQWSLGDKFNTASTKVNSLKLPSVITKQQDTQKTVRLRPLLENEIARKL---VSVEDFQD 273 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 ++I+ +F+ S+ + VL + + L I + G+TD P +++ Sbjct: 274 RSTVTIL---GDGLFESGSAQIQDQYYPVLAAVSQALDSVEGQIIVTGYTDNQPIQSLNF 330 Query: 282 RDNWRLSLDRAYSAYQVL---MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA + ++L +K+G RI + G +D + NRR++I Sbjct: 331 PSNWHLSQARADAVKEILLNYVKNG--GTRI-RSEGRGSTDPVAPNDTLENRAKNRRVEI 387 Query: 337 LV 338 + Sbjct: 388 TL 389 >gi|163758837|ref|ZP_02165924.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43] gi|162284127|gb|EDQ34411.1| hypothetical protein HPDFL43_15477 [Hoeflea phototrophica DFL-43] Length = 343 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 110/344 (31%), Gaps = 26/344 (7%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + + + + + +M V + +Q N + Sbjct: 5 RNRRRERGVDYWPGFVDALSTLLLAIMFLLTVFVLAQFFLSREISGRDQVLNRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E++ Q+ D + + + + Q Sbjct: 65 LTQLLALERS----GKQDLEDTLANLQASLSESETDRSRLQQLLDSGSGATAAAEAQIGA 120 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 SE + ++ + L + + + ++ DL ++ Sbjct: 121 LSETLDAEKKVSQRALNQVELLNQQISALRSQLAALEDALEVSETKDQETQAKIADLGRR 180 Query: 199 ISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ L+ V + ++ +L ++ ++ +F + P Sbjct: 181 LNVALAQRVQELNRYRSDFFGRLREILSSREDVRVVGDRFVFQSEVLFPSGGNELNPAGQ 240 Query: 250 VVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 + K+ E + + I + GHTD P R DNW LS RA S + L Sbjct: 241 EQMAKLAEAINELSREIPEEINWVLRVDGHTDNVPLSGTGRYADNWELSTARATSVVKYL 300 Query: 300 MKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 +++GV +R+ +GF + SD + NRRI++ + +R Sbjct: 301 IENGVPANRLVA-AGFGEFQPIADGDSDEARATNRRIELKLTER 343 >gi|116327359|ref|YP_797079.1| endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120103|gb|ABJ78146.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 224 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 10/180 (5%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +E + +EK+ + L+ + ++ + ++ + I I Sbjct: 31 EESKLENQRILEEKVNLSRSLNELKRIQEESELRIQEY--RRLIATFRSLIDAGKLKIKI 88 Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 ID R + +F S+ I ++++ +LA I GHTD +P Sbjct: 89 IDGRMVVVLSSDILFPVGSAFLSSAGIASIREVTTLLASLGGKRFQIEGHTDDTPTGIKG 148 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRIDILVED 340 NW L+ RA + ++K+G+ E+RIS S A + P SANRRI+I++ Sbjct: 149 YTNWELASSRALNVLHTMIKAGMPEERISAASMGASRPALPNTSPENRSANRRIEIVIVP 208 >gi|38327415|gb|AAR17735.1| motility protein B [Bdellovibrio bacteriovorus] Length = 248 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 11/150 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + + + ++ ++ V + G+ I++ + F + S+ PE + L K Sbjct: 99 VERSLDKSMDSAQKKLAIQDVYHDAV--GVRIAL---AASTFFQEGSAKLKPEALKXLDK 153 Query: 255 IGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312 + +VL + I I GHTD P + NW L+ RA + + L+K + R + Sbjct: 154 V-DVLKTHKKRIIIEGHTDDLPIAGTLFPSNWELAGGRASAVVRYLVKVHQMDPKRFVSL 212 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340 S + + + + D + NRRI+I + Sbjct: 213 S-YGDQKPVVPNDSDEHRAMNRRIEIFIVT 241 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + N W + YADF+T+L AFF+VM+ + ++++ +K E +L Sbjct: 1 MAKKHRKHEEHENHERWLVSYADFITLLFAFFVVMYATSTSNEEKQKEFEDS---VKLSL 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 +G D + S ++++ + K + Sbjct: 58 HLVGRGGSDADSNSIGSIIGELEMPVGNFPKKGGPGEVEDYVERS 102 >gi|29348538|ref|NP_812041.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron VPI-5482] gi|253569097|ref|ZP_04846507.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29340443|gb|AAO78235.1| putative flagellar motor protein MotB [Bacteroides thetaiotaomicron VPI-5482] gi|251841116|gb|EES69197.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 280 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 19/223 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + Q S K L ++ G + + + + E+ LS++K +R++ + Sbjct: 47 NTGDQLSAQIKKLLRDTTQMGNSIRQYQSMLSTNMTEQEKLNALLSQKKNELSERERTIN 106 Query: 194 DLAKKIS------STLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +L I+ L V D ++ + + +++ D +F S+ Sbjct: 107 ELQDMINAQNEKVKQLLNSVKDALLGFSTDELTVREKDGKVYVAMSD---KLLFQSGSAR 163 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K Sbjct: 164 LDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223 Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + GV+ +I + SG + ++ S NRR +I++ + Sbjct: 224 NYGVNPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265 >gi|222056198|ref|YP_002538560.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221565487|gb|ACM21459.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 349 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 11/209 (5%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q E K + + ++L ++ ++ + + ++ + +K+ + + Sbjct: 129 AQEEAAKKVPELQAAVADREERISNLNATLRSLKSNLIQ--IRTDVVQLAKKRSGSEEKE 186 Query: 198 KISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + +D I KG +L + I+ +F S+ L+++ Sbjct: 187 NAYAAFRRDFSDQIGKGEILVTEYPDKL---IVTMPEQVLFRSGSATINKGGKKALERVA 243 Query: 257 EVLAHS-TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +L I I GHTD++P ++ R NW LS RA S + L K G ++ Sbjct: 244 SILKKVKNNRIRIEGHTDSTPIKSKHRYASNWDLSAARAASVVRHLQKKGAVNPEFLTLA 303 Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVED 340 G+ + A++ NRRI+I + Sbjct: 304 GYGPYAPAAANNTSRGRSLNRRIEIALIP 332 >gi|269792934|ref|YP_003317838.1| OmpA/MotB domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100569|gb|ACZ19556.1| OmpA/MotB domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 241 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 9/163 (5%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 A KR Q+ + I+ L L + + + + G+ +S+ +Q +F S Sbjct: 79 QDAGDSIKRTQEFKEGIARQLQALAKEEGLQSQMKVHVDQRGVTVSMSEQ---FLFAPGS 135 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300 + P VL K+G+VL +S GHTD +P DNW LS RA + ++ Sbjct: 136 AELSPFARRVLFKVGQVLRVVRFPLSFEGHTDNTPMEGGLYGDNWGLSAARAAAVASYMV 195 Query: 301 KS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 G+S+ + + G+ + + +D + NRR+DI++ Sbjct: 196 NRIGLSDKNVQAV-GYGPSKPLVPNDTPEHRAINRRVDIVILT 237 Score = 53.3 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 39/111 (35%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + P + Y D +T+L+ FF+ ++ ++ D + + F L Sbjct: 1 MARKKKQPEGPTGAPLFMATYGDMVTLLLTFFVFLYSFSSIDVQKFQKMIFSFQGALGVL 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 D + Q+ D K + ++ + +++ Q Sbjct: 61 PGGKTIQEDAGVYQGKVGQDAGDSIKRTQEFKEGIARQLQALAKEEGLQSQ 111 >gi|94270700|ref|ZP_01291804.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93450704|gb|EAT01786.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 227 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ K I L + V E IL+ I D FD + + +L Sbjct: 59 EVRKPIQQVFEDLQEAGL---VTVEDQEEEILVRIQD---AVAFDTGRAEIKGDFRELLD 112 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 ++GE++ S + + GHTD P R A NW LS RA + + L+ + + DR++ Sbjct: 113 QLGEIIYDSQSTMVVEGHTDNVPLRPGAPFASNWELSSARAVAVVEYLINEHNIPRDRLA 172 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ A + +D +ANRR++ + + Sbjct: 173 AVA-HADGKPVATNDTAEGRAANRRVEFRIRPGE 205 >gi|226944750|ref|YP_002799823.1| hypothetical protein Avin_26720 [Azotobacter vinelandii DJ] gi|226719677|gb|ACO78848.1| OmpA/MotB domain protein [Azotobacter vinelandii DJ] Length = 430 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 10/149 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L + D +V+ + + +++ R +FD ++ + +L +IG+ Sbjct: 284 RLAKLLEAEIRDGLVR--VSDEVDRSLVV----LRGDGLFDSGAAQVIERFQPLLARIGD 337 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + + G+TD P R + NW LS RA + L R+ + G Sbjct: 338 ALNTTRGSVLVMGYTDNVPIRGLRYASNWELSQARADTVKAQLQARLSDPGRV-RAEGRG 396 Query: 317 HHRLKIASD--PMNSANRRIDILVEDRQG 343 +D + NRR++I + G Sbjct: 397 AADPVAPNDSPANRARNRRVEITLLVPPG 425 >gi|313639080|gb|EFS04061.1| chemotaxis protein MotB [Listeria seeligeri FSL S4-171] Length = 275 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 92/237 (38%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--- 173 + ++ E + N +G D + K++++++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKGEGPDDPNVNAVLKAMDEQDKKKQA 95 Query: 174 ---FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S + A+ + ++ + + G+LI+I D Sbjct: 96 NEEEKAKKAAAALLKKQNEEKIEAFKKQIDSYIQ---AEKLGTKMMTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARD-NWRL 287 +F S+ + ++IG++ A + + GHTD P NW L Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGDLFAQGKGTMEGIVSGHTDNVPISTSTYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ + +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENNEVNPGEFSA-RGYGEFKPVAKNDIATNREKNRRVEIMVRP 265 >gi|298386938|ref|ZP_06996492.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14] gi|298260088|gb|EFI02958.1| flagellar motor protein MotB [Bacteroides sp. 1_1_14] Length = 280 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 19/223 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + Q S K L ++ G + + + + E+ LS++K +R++ + Sbjct: 47 NTGDQLSAQIKKLLRDTTQMGNSIRQYQSMLSTNMTEQEKLNALLSQKKNELSERERTIN 106 Query: 194 DLAKKIS------STLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +L I+ L V D ++ + + +++ D +F S+ Sbjct: 107 ELQDMINAQNEKVKQLLNSVKDALLGFSTDELTVREKDGKVYVAMSD---KLLFQSGSAR 163 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K Sbjct: 164 LDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223 Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + GV+ +I + SG + ++ S NRR +I++ + Sbjct: 224 NYGVNPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265 >gi|241206240|ref|YP_002977336.1| hypothetical protein Rleg_3551 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860130|gb|ACS57797.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 343 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 106/340 (31%), Gaps = 18/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + T + + + + +M V + ++ N + Sbjct: 5 RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLNRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E+ + + +L + + Q + Sbjct: 65 LTQLLALEKGSNQDLQDSVANLQASLASAEGDRSRLQALLSAGSGGQDAAQKRIGSMTQE 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E + S S+ + L I E K+++ K L Sbjct: 125 LDEQKQVSERALSQVELLNQQIAALRSQIAAVEAALQASEDKDRVSQTKIADLGSRLNVA 184 Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ L+ +D + + R I I ++ +F + PE + Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMA 244 Query: 254 KIGEVLAHSTEVI--------SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 K+ L + I + GHTD P RDNW LS RA S + L+ G Sbjct: 245 KLASALLDLAKEIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQG 304 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V DR+ +GF + D ++ NRRI++ + ++ Sbjct: 305 VPADRLVA-AGFGEFQPIAPGDTPDARSTNRRIELKLTEK 343 >gi|255036139|ref|YP_003086760.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254948895|gb|ACT93595.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 295 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + K + N Q E K + ++ DL + K+ + Sbjct: 59 KAKNDELTSKNAKMKELEDQVEFLKKNNNNLLDRMSDLSVISKEGSESIKKSLAMMDQQG 118 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + K + L + L +AD + V E + + +S+ D+ +F Sbjct: 119 AQIRDLNKSIQHKDSLNMALVLNLKRSLADVSDEDVQIEVKKGVVYVSLSDKM---LFRS 175 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ 297 SS+ VL K+ ++L E I I GHTD P DNW LS+ RA + + Sbjct: 176 GSSVINSAADNVLSKVAKILNDYKEIEILIEGHTDNVPIATDKVADNWDLSVLRATAVAR 235 Query: 298 VLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 L K GV R+ G + K+A+D P S NRR +I++ + Sbjct: 236 TLQKKYGVEPVRMIA-GGRGEYLPKVANDSAPNRSLNRRTEIIITPK 281 >gi|227823348|ref|YP_002827320.1| hypothetical protein NGR_c28210 [Sinorhizobium fredii NGR234] gi|227342349|gb|ACP26567.1| flagellar motor protein [Sinorhizobium fredii NGR234] Length = 343 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 109/326 (33%), Gaps = 29/326 (8%) Query: 40 FMTVLMAFFLVMWIINAT----------DDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 T+LMA ++ + D+ + N + L G D ++ Sbjct: 23 LSTLLMAIMFLLSVFVTAQFLMGREITGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 82 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 + + ++ +D GS + Q + S Sbjct: 83 LANLQASLSQSEGERSRLQSLLDQGAGSADAASQKIGRLGSELENERQISSRAMSQIELL 142 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + + + +E ++ E +K L + L ++++ +D Sbjct: 143 NQQIAALRSQIAAIEGALQASEAKDQSSQAKIADLGRRLNVALAQRVQELNR----YRSD 198 Query: 210 NIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 + + R I I ++ +F S+ PE + K+ L Sbjct: 199 FFGRLREILSDRENIRIVGDRFVFQSEVLFSSGSNDLNPEGQGEMAKLATALLDLAKEIP 258 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 A V+ + GHTD P R DNW LS RA S + L+ GV DR+ +GF Sbjct: 259 AEINWVLRVDGHTDNVPLSGTGRFADNWELSSARATSVVKFLISRGVPADRLVA-AGFGE 317 Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341 ++ + + + NRRI++ + ++ Sbjct: 318 YQPIAVGESLEARAQNRRIELKLTEK 343 >gi|289433964|ref|YP_003463836.1| chemotaxis protein MotB [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315301919|ref|ZP_07872930.1| chemotaxis protein MotB [Listeria ivanovii FSL F6-596] gi|289170208|emb|CBH26748.1| chemotaxis protein MotB [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313629715|gb|EFR97837.1| chemotaxis protein MotB [Listeria ivanovii FSL F6-596] gi|313634398|gb|EFS00987.1| chemotaxis protein MotB [Listeria seeligeri FSL N1-067] Length = 275 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 91/237 (38%), Gaps = 20/237 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--- 173 + ++ E + N +G D + K++++++ Sbjct: 36 FASSSVDAKKFEQMGNAFKKIVEEGAAGNQAYVSKGEGPDDPNVNAVLKAMDEQDKKKQA 95 Query: 174 ---FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + +L + +++++ K+I S + A+ + + + + G+LI+I D Sbjct: 96 NEEEKAKKAAAALLKKQNEEKIEAFKKQIDSYIQ---AEKLGTKMTTKYSDEGLLITIRD 152 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARD-NWRL 287 +F S+ + ++IG++ A + + GHTD P NW L Sbjct: 153 D---ILFQSGSAELSAGKREIAKEIGDLFAQGKGTMEGIVSGHTDNVPISTSTYSSNWEL 209 Query: 288 SLDRAYSAYQVLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 S+ RA + + +++ V+ S G+ + +D NRR++I+V Sbjct: 210 SVARAVNFMEAIIQENNEVNPGEFSA-RGYGEFKPVAKNDVATNREKNRRVEIMVRP 265 >gi|162456876|ref|YP_001619243.1| hypothetical protein sce8593 [Sorangium cellulosum 'So ce 56'] gi|161167458|emb|CAN98763.1| probable outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 210 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 24/176 (13%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ E+ + RL+ L S L+G +A+ T I I R + + Sbjct: 48 DLAAERATRATERARLEAL----ESALAGPLAEG-----RITLTEGRIGI-----RGSIL 93 Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F+ +S+ P I +L+ + + L H E+I + G TD P + +R DNW LS Sbjct: 94 FELNSAELQPAGIALLRALADPLKAYLEHHDELIMVSGFTDDRPLTSSSRGYADNWELSA 153 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 RA + + L +GV + + +GF +D + NRR++I R+G Sbjct: 154 QRALTVTRALAAAGVPDTSLFA-AGFGERHPVAPNDTSENRAKNRRVEISPIPRRG 208 >gi|328958273|ref|YP_004375659.1| uncharacterized protein YtxE [Carnobacterium sp. 17-4] gi|328674597|gb|AEB30643.1| uncharacterized protein YtxE [Carnobacterium sp. 17-4] Length = 205 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLS 204 SL + E + + + SI +E E I A + L +L K + ++ Sbjct: 5 SLEKFQEASNSIQSAFNGGDSIIEESIKDTETEPSEDITAAPSEDSLDPELIKMYNEVVA 64 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 L A+ + E + GI ++I + + +F S+I L + +++ Sbjct: 65 FLEANEMTAQASVEYDQDGIYVNI---QESILFGSGSAIIAESGESTLNGLSDLIQQFEN 121 Query: 265 VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI 322 + + G+TD P N NW LS RA S + L + V R+S G+ + Sbjct: 122 DVVVEGYTDDVPMNNSIFSSNWELSTGRALSVLRYLSEERSVDPTRLSA-KGYGEYHPIS 180 Query: 323 ASDPMN--SANRRIDILVE-DRQG 343 +D NRR++I++ DRQG Sbjct: 181 PNDSEENKEKNRRVNIVLVYDRQG 204 >gi|154687112|ref|YP_001422273.1| flagellar motor protein MotS [Bacillus amyloliquefaciens FZB42] gi|154352963|gb|ABS75042.1| YtxE [Bacillus amyloliquefaciens FZB42] Length = 229 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 9/162 (5%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 K L + + + + A ++ + + G+++ + + +F Sbjct: 69 ASSDKANENKEQDLLLQNVKTYIK---AHHLSSKLTAKRDERGVVLVL---QEAVLFQTG 122 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + L VL +I +L I + GHTD+ NW LS RA S + Sbjct: 123 KADVLKNAEPVLHQIAVLLKTIPNDIQVEGHTDSRRISTYQFPSNWELSSARAASVIRYF 182 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 + + +G+A + S NRR++I+++ Sbjct: 183 TANEDFSAKRFISAGYADTKPVKDNKSPGHMKENRRVEIVIK 224 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 ++ ++ + W + +AD +T+++ FF++++ ++ D + ++ + G Sbjct: 10 RRNKLEHSG-GSPRWMVTFADLITLILVFFILLFSMSQIDAEKFQSAVSSIHTNGSGGEP 68 Query: 79 ASK 81 AS Sbjct: 69 ASS 71 >gi|162146328|ref|YP_001600787.1| hypothetical protein GDI_0503 [Gluconacetobacter diazotrophicus PAl 5] gi|161784903|emb|CAP54446.1| putative outer membrane protein [Gluconacetobacter diazotrophicus PAl 5] Length = 326 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 113/335 (33%), Gaps = 19/335 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ L +W T+LM V+ + + L Sbjct: 1 MARRRRQTHA--GLDAWPGYVDALSTLLMVIIFVLLVF-VLGQAFLSVVLNKRQQAMDQL 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + D + ER + + LS+ + D + ++ + Q Sbjct: 58 AHQVAQLNDMLSL-ERGQNHSLQLSVASLRAAHEKDAAMETSLTAQVAQTTPERDNQAHL 116 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +Q S+ L E+ + + + ++ +N K L +K L D Sbjct: 117 AQASQQQVTDLGSQLEQLRQ--QLSAAMAVLDISQNEIRDRDRKIDDLGLKLNVALADKV 174 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++ S ++ +L ++ ++ +F + P+ I ++ + Sbjct: 175 EQLQRYRSEFFGR--LRDILQNQDGVQVVGDRFVFQSEVLFPPGGAELSPKGIADIRALA 232 Query: 257 EVL--------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 A ++ + GH D P + NW LS RA + ++L+ G+S Sbjct: 233 RTFHQVSAQIPASIPWILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHH 292 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 ++ +GFA + + + NRRI+ + DR Sbjct: 293 LAA-TGFADFQPLDTHETPAAFARNRRIEFRLTDR 326 >gi|149375283|ref|ZP_01893054.1| OmpA/MotB domain protein [Marinobacter algicola DG893] gi|149360319|gb|EDM48772.1| OmpA/MotB domain protein [Marinobacter algicola DG893] Length = 355 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 21/241 (8%) Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + Q L + + ++ + + + + ++ ++ + + L Sbjct: 116 NAEAQALRVEDLGKAIASAESELEDEEQLTASQRAIILQLSNQISALQDQLSRITAALRL 175 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF-----ETTRTGILISIIDQR--- 232 ++ L +++ L+++ K++++ L+ V + F + + I I+ R Sbjct: 176 QEDLTAEKEAELEEVGKRLNTLLAERVNELERYQSEFFGRLRDILQDNENIRIVGDRFLL 235 Query: 233 -NTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRN-IAR 282 + +F S+ PE L K+ EVL ++ I GHTD P Sbjct: 236 PSELLFASGSARLGPEGQRELDKLAEVLLDVVAAIPEDIDWILRIDGHTDRIPINTEAFP 295 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 NW LS RA + + L GV ++R+ +GF + S NRRI+I + D Sbjct: 296 SNWELSTARAVAVVRYLASEGVPQNRMVA-AGFGEFFPVASGGSAEALRQNRRIEIKLTD 354 Query: 341 R 341 R Sbjct: 355 R 355 >gi|86141364|ref|ZP_01059910.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] gi|85831923|gb|EAQ50378.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] Length = 276 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 90/216 (41%), Gaps = 16/216 (7%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 QSE K +T +L + +++ + L ++ + K +D Sbjct: 50 AQSETMKEQITDLRNANNNLINTQGNLTTLSAKGAENLEKSLEQMKEKDLQIKAFRDAMN 109 Query: 198 K-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + + ++L G + + + + + + +SI D +F+ Sbjct: 110 RKDSVTLALVTSLKGAIGNLNDEDIEINVEKGVVYVSISD---KLLFNSGRWDVTNRAKE 166 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 VL K+ V+ + + + GHTD+ P ++ DNW LS+ RA S ++L + GV + Sbjct: 167 VLGKVATVVKNKPDIEFMVEGHTDSQPISTSVIEDNWDLSVKRATSVVRILQEEFGVPPE 226 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 R+ +G +++ ++D + NRR I+V + Sbjct: 227 RMVA-AGRSYYVPLASNDTAEGRARNRRTRIVVLPK 261 >gi|148258147|ref|YP_001242732.1| hypothetical protein BBta_6939 [Bradyrhizobium sp. BTAi1] gi|146410320|gb|ABQ38826.1| Putative flagellar motor protein MotB [Bradyrhizobium sp. BTAi1] Length = 342 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 102/266 (38%), Gaps = 30/266 (11%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS-QQSEHCKNSLTRDSEKGKDLCKSTDL 163 + L+ G N + + R++ L+++ + N L R + K + Sbjct: 78 SLDDQVAQLRAGLANAEAERDRVKGLYDGLASAGSNAAGRTNELNRALDSEKQVTARAMA 137 Query: 164 E--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------ 209 + ++ ++ L + + + R+ DL +++ L+ V + Sbjct: 138 QIEVLNQQISALRRQLAALEDALDASEKRDKESQNRIADLGSRLNVALAQRVQELTRYRS 197 Query: 210 ---NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL------- 259 ++ +L ++ ++ FD + LPE L + L Sbjct: 198 EFFGRLRAILGNRPDIRVVGDRFVFQSEVFFDTGQATLLPEGQQELNSVATALVDLDKQI 257 Query: 260 -AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 A + V+ + GHTD P + + + NW LS RA S Q L+ GV R+ +GFA Sbjct: 258 PAEISWVLRVDGHTDVRPINSPVFKSNWELSSARAISVVQYLISLGVPAQRLVA-AGFAE 316 Query: 318 HRLKIASDPMNS--ANRRIDILVEDR 341 + + ++ NRRI++ + +R Sbjct: 317 FQPLDPGNTEDAFRRNRRIELKLTER 342 >gi|296124309|ref|YP_003632087.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] gi|296016649|gb|ADG69888.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] Length = 275 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 29/229 (12%) Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 ++ Q N ++ Q E +L E + S +++ + S Sbjct: 50 MERNQFQGNLSQLMAEKVQLEQQNATLRNGLELANQRVDNMLAANSSLEDKVKNMLTSSS 109 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + L+ +R+++L +K + + +F Sbjct: 110 KNPLSTDANQRMEELRRK-------YPDFEFDPQTGVSKFQENL-----------LFASG 151 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA-----RDNWRLSLDRA 292 S PE +LQ+ ++ + + + GHTD P A NW LS DRA Sbjct: 152 SDEIRPEAYALLQEFARIMNSADSKHLKVLVVGHTDDKPISRKAVADKHPTNWHLSTDRA 211 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 S L KSG++E R+ +G++ + + D NRR++I V Sbjct: 212 NSVVLALKKSGLAEQRMGA-AGYSLFQPLAPNSDDKNRQKNRRVEIFVL 259 >gi|330953776|gb|EGH54036.1| flagellar motor protein MotD [Pseudomonas syringae Cit 7] Length = 295 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTSTVGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|257457608|ref|ZP_05622775.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580] gi|257444994|gb|EEV20070.1| chemotaxis protein MotB [Treponema vincentii ATCC 35580] Length = 238 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 14/167 (8%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + AM++ K L KK S + + N + + GI+IS+ F ++ Sbjct: 75 SSMPAMEKGKMLGTALKKAVSIFAPEIKTN---KIAVTSDERGIVISLAAD---SFFARN 128 Query: 241 SSIPL-PETIVVLQKIGEVLAH---STEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSA 295 S+ E+ L +I + L+ + I GHTD+S NW LS RA + Sbjct: 129 SAELNIEESRETLLRIAQFLSDKELAARRFRIEGHTDSSDALSGKWTSNWELSAARAINV 188 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L G ED+ I+G+A R +++ + NRR+DI++ D Sbjct: 189 LHNLTDFGAQEDKF-SIAGYADTRPVYSNETAEGRAYNRRVDIIILD 234 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 5/143 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74 + +K + P W Y D +T+++ FF++++ + D +A+ +P G Sbjct: 1 MARKKKGANAP--GSGWLTTYGDMVTLMLCFFVMLYEPSEVDITRLQALSASISGDPTGG 58 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 ++ ++ + D N + + + K K E I + Sbjct: 59 SISLSAGKLADLGNTISSMPAMEKGKMLGTALKKAVSIFAPEIKTNKIAVTSDERGIV-I 117 Query: 135 SNSQQSEHCKNSLTRDSEKGKDL 157 S + S +NS + E+ ++ Sbjct: 118 SLAADSFFARNSAELNIEESRET 140 >gi|218461676|ref|ZP_03501767.1| flagellar motor protein MotB [Rhizobium etli Kim 5] Length = 75 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/73 (54%), Positives = 57/73 (78%) Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 +IRGHTD ++ +NWRLS+DRA SAY +L++ G+ E RIS++SGFA RLK+ ++P Sbjct: 1 AIRGHTDGRQYKGAQNENWRLSMDRAQSAYYMLVRGGLDEKRISQVSGFADRRLKLPAEP 60 Query: 327 MNSANRRIDILVE 339 N+ANRRI+ILV+ Sbjct: 61 FNAANRRIEILVQ 73 >gi|144898366|emb|CAM75230.1| flagellar motor protein MotB [Magnetospirillum gryphiswaldense MSR-1] Length = 319 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 48/323 (14%) Query: 37 YADFM-TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQ 95 + D M T+LM V+ + + Q+F + A G + + Sbjct: 17 FVDAMATLLMVLIFVLLVF---------VLAQFF------MGNALTGRDQALSRLQAEMA 61 Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 + ++ E V + +K Q E + S ++ + + ++ + Sbjct: 62 SMVEQLSLERAKSADVKADLTRLQEKLQASLAERDNLLSSLDEERHLSETARSQADLLNQ 121 Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------ 209 + ++ ++ L + L++++K ++ DL K+++ L+G V + Sbjct: 122 QMT-------AMREQLEKLAAALDATEKLSVEQKAQIADLGKRLNVALAGKVEELQRYRS 174 Query: 210 ---NIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL----- 259 ++ VL E R GI I ++ +FD +S+ ++++ + L Sbjct: 175 EFFGKLRKVLGE--RQGIRIEGDRFVFQSELLFDSASADLGVSGEQQVRQLAKTLIDLSK 232 Query: 260 ---AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 V+ + GHTD P ++ NW LS RA S + L+ +GV DR++ +GF Sbjct: 233 QIPKEVNWVLRVDGHTDKRPIKSGRFPSNWELSTARAISVIRTLIDAGVPADRLAA-AGF 291 Query: 316 AHHRLKIASDPMN--SANRRIDI 336 SD + NRRI+I Sbjct: 292 GEFLPLDNSDSEAALAKNRRIEI 314 >gi|209543669|ref|YP_002275898.1| hypothetical protein Gdia_1504 [Gluconacetobacter diazotrophicus PAl 5] gi|209531346|gb|ACI51283.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 326 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 113/335 (33%), Gaps = 19/335 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ L +W T+LM V+ + + L Sbjct: 1 MARRRRQTHA--GLDAWPGYVDALSTLLMVIIFVLLVF-VLGQAFLSVVLNKRQQAMDQL 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + D + ER + + LS+ + D + ++ + Q Sbjct: 58 AHQVAQLNDMLSL-ERGQNHSLQLSVASLRAAHEKDAAMETSLTAQVAQTTAERDNQAHL 116 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +Q S+ L E+ + + + ++ +N K L +K L D Sbjct: 117 AQASQQQVTDLGSQLEQLRQ--QLSAAMAVLDISQNEIRDRDRKIDDLGLKLNVALADKV 174 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++ S ++ +L ++ ++ +F + P+ I ++ + Sbjct: 175 EQLQRYRSEFFGR--LRDILQNQDGVQVVGDRFVFQSEVLFPPGGAELSPKGIADIRALA 232 Query: 257 EVL--------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 A ++ + GH D P + NW LS RA + ++L+ G+S Sbjct: 233 RTFHQVSAQIPASIPWILRVDGHADRQPIHSAFASNWELSSARAITVVKLLIAEGISPHH 292 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 ++ +GFA + + + NRRI+ + DR Sbjct: 293 LAA-TGFADFQPLDTHETPAAFARNRRIEFRLTDR 326 >gi|161520469|ref|YP_001583896.1| hypothetical protein Bmul_3921 [Burkholderia multivorans ATCC 17616] gi|160344519|gb|ABX17604.1| type VI secretion system OmpA/MotB family protein [Burkholderia multivorans ATCC 17616] Length = 431 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +K++ D+A+ L L+ D I G + + S++ R MF Sbjct: 269 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 326 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296 + ++ KI +A ++I G+TD P R+ N LS +RA Sbjct: 327 RPGGASVQASMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSGQFASNQALSEERATQVM 386 Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 Q+L +GV +R+ + G A + + NRR++I Sbjct: 387 QMLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 427 >gi|172064681|ref|YP_001812331.1| DotU family type IV/VI secretion system protein [Burkholderia ambifaria MC40-6] gi|171998166|gb|ACB69082.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MC40-6] Length = 436 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 8/157 (5%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K RL +++ LS L+ + + +G+L T S++ + MF S LP Sbjct: 285 KDRLVSAPQRLR--LSYLLRNEVARGLL--TVDEDDRRSVVVFKGDSMFASGQSTVLPVV 340 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 L K+G +A + +RGHTD P R+ N LS RA Q+L + G D Sbjct: 341 EPALGKVGGEVARVGGSVLVRGHTDNQPIRSAVFPSNLVLSEKRAAYVAQILQQRGTPAD 400 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RI I G + A+ + NRR++I+V ++ Sbjct: 401 RIHAI-GKGDTQPVGDNATAAGRALNRRVEIVVTQQR 436 >gi|331016979|gb|EGH97035.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 295 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFFSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L G++ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|313610144|gb|EFR85455.1| chemotaxis protein MotB [Listeria monocytogenes FSL F2-208] Length = 170 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 14/167 (8%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 +L + +++++ K+I S ++ A+N+ + + + G+LI+I D +F Sbjct: 1 AALLKKQNEEKIEAFKKQIDSYIA---AENLGTKMTTKYSDEGLLITIRDD---ILFQSG 54 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ 297 S+ + ++IGE+ + + GHTD P +I NW LS+ RA + + Sbjct: 55 SAELTAGKREIAKEIGELFXQGKGTMEGIVSGHTDNVPISTSIYSSNWELSVARAVNFME 114 Query: 298 VLMKSG--VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 +++ V+ S G+ R +D NRR++I+V Sbjct: 115 AIIQENSEVNPGEFSA-RGYGEFRPVAKNDIAANREKNRRVEIMVRP 160 >gi|326336238|ref|ZP_08202410.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691747|gb|EGD33714.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 278 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + +L G++ + + + + + + +SI D+ +F S P VL K+ +V Sbjct: 117 LVQSLKGVLGNLDDQDITIQVDKGVVYVSISDKM---LFSSGSYNVTPRAREVLGKVAKV 173 Query: 259 LAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + + + GHTD P +N +DNW LS+ RA + ++L GV+ R++ +G Sbjct: 174 VNNKPDFEFMVEGHTDNVPIKNNCIKDNWDLSVLRATAVVRILQNDFGVTPARMTA-AGR 232 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341 + + AS + NRR I+V + Sbjct: 233 SEYVPVTTNASADGRALNRRTRIVVLPK 260 >gi|189353340|ref|YP_001948967.1| hypothetical protein BMULJ_04580 [Burkholderia multivorans ATCC 17616] gi|189337362|dbj|BAG46431.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] Length = 432 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +K++ D+A+ L L+ D I G + + S++ R MF Sbjct: 270 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 327 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296 + ++ KI +A ++I G+TD P R+ N LS +RA Sbjct: 328 RPGGASVQASMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSGQFASNQALSEERATQVM 387 Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 Q+L +GV +R+ + G A + + NRR++I Sbjct: 388 QMLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 428 >gi|305667009|ref|YP_003863296.1| putative flagellar motor protein MotB [Maribacter sp. HTCC2170] gi|88709244|gb|EAR01478.1| putative flagellar motor protein MotB [Maribacter sp. HTCC2170] Length = 283 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 19/227 (8%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 T + + N F +N+Q+ + +LT + KG + +LEKS+ + L Sbjct: 54 TATSRLQTLEDQNAFLKANNQELINNMGNLTTLTTKGAE-----NLEKSLESLQEKDLTI 108 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + L L + + L L ++ + + + +SI D +F Sbjct: 109 RKLQNAITRRDSVNL-SLVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLF 160 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 S +L K+ +V+ + + + GHTD P+R + DNW LS RA + Sbjct: 161 SSGSYNITSRAKEILGKVAKVVNNKPDFEFMVEGHTDDVPYRKGVLLDNWDLSAKRATAV 220 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++L GV R++ +G A S S NRR I+V + Sbjct: 221 VRILQNDYGVDPKRMTA-AGRAEFVPV--SQTQKSKNRRTRIVVLPK 264 >gi|150397861|ref|YP_001328328.1| hypothetical protein Smed_2663 [Sinorhizobium medicae WSM419] gi|150029376|gb|ABR61493.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 342 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 21/322 (6%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQN 96 T+LMA ++ + + I N + ++ + E++ + + Sbjct: 22 LSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 81 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 +L ++ ++ + + S+ + S S+ Sbjct: 82 LANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIELL 141 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMK---RKKRLQDLAKKISSTLSGLVADNIVK 213 + L I E +K++ K +RL + L+ +D + Sbjct: 142 NQQIAALRSQIAAIEGALQASEAKDEASQAKISDLGRRLNVALAQRVQELNRYRSDFFGR 201 Query: 214 GVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHST 263 + R I I ++ +F + PE + K+ + A Sbjct: 202 LREILSDRENIRIVGDRFVFQSEVLFPSGGNELNPEGQAEMTKLAAAILDLAREIPAEIN 261 Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 V+ + GHTD I R DNW LS RA S + L+ GV DR+ +GF ++ Sbjct: 262 WVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AGFGEYQPI 320 Query: 322 IASDPMNSA--NRRIDILVEDR 341 SD + NRRI++ + ++ Sbjct: 321 APSDTQEARAQNRRIELKLTEK 342 >gi|331011090|gb|EGH91146.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 295 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F +IP + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 39/119 (32%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + + N W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRPAEEHENHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTERT 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 K I P + + E Q R S+ Sbjct: 63 MKPIPIGDQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQM 121 >gi|320354327|ref|YP_004195666.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122829|gb|ADW18375.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 248 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+I + L V+ V + + I + +FD+ + P + +L+K+ Sbjct: 92 KRIKNDLELAKLQAQVEAVQQDNDSIILRI-----HESVLFDEGQATLNPASYPILRKVA 146 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISKISGF 315 +++ + I GHTD++P NW LS+ RA + + + DR+S +G+ Sbjct: 147 DIIRPLPMSMRIEGHTDSTPMAGATTSNWDLSVARAVAVMSFYHRGELFALDRMSA-AGY 205 Query: 316 AHHRLKIASDPMN--SANRRIDILVEDRQ 342 R + + + NRR+D ++ + Sbjct: 206 GDTRPLAPNTTKDNMAKNRRVDFVLRSNR 234 >gi|289627957|ref|ZP_06460911.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647094|ref|ZP_06478437.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str. 2250] gi|298487807|ref|ZP_07005848.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157899|gb|EFH98978.1| Flagellar motor rotation protein motB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866472|gb|EGH01181.1| flagellar motor protein MotD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 295 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 SI E + + LQ +A+ + +++K + Sbjct: 75 SIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F +IP + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ A + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQAEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSIKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|110639014|ref|YP_679223.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281695|gb|ABG59881.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC 33406] Length = 323 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 16/256 (6%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 +L ++ K D + +NQ Q N + + S K + Sbjct: 57 NLVLEHTALKKRYDSLLAISNQLLQDTTDLNAALRKTQANYEALNNTYERLLSTHNKIIN 116 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLF 217 + + +NK + K + +R++R+ +L K I+ + N V L Sbjct: 117 YNASELEKLNKSLAKRELEVGKLQADLSERERRVNELEKIIADKERAVNELRNKVTSALL 176 Query: 218 ETTRTGILISIIDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 + I + D + +F S+ P+ + L+K+ VL ++ I + G Sbjct: 177 NYKDKDLTIQVKDGKVYVSLAEQLLFKSGSTDVDPKGVEALKKLAAVLKEQQDITIMVEG 236 Query: 271 HTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDP 326 HTD P N +DNW LS+ RA S ++L +GV I + +G + Sbjct: 237 HTDDVPVSKGTNGIKDNWDLSVLRATSITRILTGAGVDP--IHVVPAGHGEFIPVATAKT 294 Query: 327 MNSA--NRRIDILVED 340 + NRR +I++ Sbjct: 295 AEARSQNRRTEIILTP 310 >gi|298346001|ref|YP_003718688.1| flagellar motor protein B [Mobiluncus curtisii ATCC 43063] gi|304390241|ref|ZP_07372195.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657506|ref|ZP_07910388.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236062|gb|ADI67194.1| flagellar motor protein B [Mobiluncus curtisii ATCC 43063] gi|304326723|gb|EFL93967.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491978|gb|EFU81587.1| OmpA/MotB domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 307 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 104/326 (31%), Gaps = 71/326 (21%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K+ P+N W + Y D +TV+M FLV++ I+ D + +L Sbjct: 1 MAKRKHECPEPDNTERWAVSYLDMITVMMCLFLVLYAISQVDQGKLSKL-------RTSL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 NP + I + ++ Sbjct: 54 AAGFNSTIQIANPLQTDGGLGI--------------------------------LAGSTS 81 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + Q +L ++ E E + S + + +++L+D Sbjct: 82 AVQLGTLMGNLNQNPES--------------QPERIQAMREASHLNSIKKQVEEQLKDAG 127 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+ + T G+++ ++ N F + P VL+ I Sbjct: 128 KE--------------GSLAMRITDKGLVLGMV--ANDTYFKTGDATIQPTAREVLKAIS 171 Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L E I+I G+ D P + N+ L+ RA L GV ++ IS Sbjct: 172 PTLMSIEEGIAIEGYADPQPISSAKFPSNYHLASARAIEVLIALKDDGVPGTKLRSISYG 231 Query: 316 AHHR-LKIASDPMNSANRRIDILVED 340 A H+ + NRR+DI++ Sbjct: 232 ADHQTEATPGQDAWAFNRRVDIVIMS 257 >gi|298206940|ref|YP_003715119.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] gi|83849574|gb|EAP87442.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] Length = 321 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 15/231 (6%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 + S + +L +S++ + L + +K EE L L + Sbjct: 83 NATKQSYESLQKSYDALEANSSKALAENSKQNRALIAELEDKKKALAEERATLDKLKADL 142 Query: 183 ILAMKRKKRLQDL-------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 R L+ + + + + +S + D KG+ E + +S+ N Sbjct: 143 ETRSNRINELESVIAAKEAKMQALKTAVSSALGDFEGKGLTVEQRNGKVYVSM---ENKL 199 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR--DNWRLSLDRA 292 +F+ S E + ++GEVLA + ++ + I GHTD P+ DNW LS RA Sbjct: 200 LFNSGSWAVGSEGRRAVNQLGEVLASNPDIAVLIEGHTDNVPYGGNGPLQDNWDLSTKRA 259 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 S +L ++ + + +G + ++D + NRRI++++ + Sbjct: 260 TSIVNILRENSQIDPQNLTAAGRGEYLPIASNDSATGKAKNRRIEVILTPK 310 >gi|257484887|ref|ZP_05638928.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 295 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F +IP + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ A + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQAEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I P + + E Q R S+ Sbjct: 61 RTMKPIPIGDQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|160899279|ref|YP_001564861.1| hypothetical protein Daci_3845 [Delftia acidovorans SPH-1] gi|160364863|gb|ABX36476.1| type IV / VI secretion system protein, DotU family [Delftia acidovorans SPH-1] Length = 443 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 10/154 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + L ++ L + + + ++I R +FD ++++ P Sbjct: 276 AATVATLKPRLRQFLEPEIREGL-----VSVRDEADRSTVI-LRGDGLFDPAATVVKPRY 329 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSED 307 + V+ ++ L + + G+TD P R NW LS +RA + Q+L + + Sbjct: 330 VQVIHRVAAALDEVPGKVVVNGYTDNLPIRTARFPSNWNLSQERAQAVSQML-GGSLRDR 388 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + G A ++ + NRR++I++ Sbjct: 389 QRLHAEGRADSDPVAPNNTAEGRALNRRVEIVLL 422 >gi|71737581|ref|YP_275515.1| flagellar motor protein MotD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558134|gb|AAZ37345.1| chemotaxis protein MotB [Pseudomonas syringae pv. phaseolicola 1448A] gi|283133060|dbj|BAI63827.1| flagellar motor protein MotD [Pseudomonas syringae pv. tabaci] gi|320325140|gb|EFW81209.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea str. B076] gi|320329399|gb|EFW85392.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea str. race 4] gi|330889033|gb|EGH21694.1| flagellar motor protein MotD [Pseudomonas syringae pv. mori str. 301020] gi|330986516|gb|EGH84619.1| flagellar motor protein MotD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 295 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F +IP + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ A + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQAEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|284040562|ref|YP_003390492.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283819855|gb|ADB41693.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 294 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 9/210 (4%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q ++ K + ++ DL + ++ L +K +R L Sbjct: 72 QAQIDYLKKTNINLLDRMSDLSIVSKSGAESIRKSLETLNEQTKYTNNLNSTIQRKDSLN 131 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + +L + D + V E + + +SI D +F S P+ VL K+ Sbjct: 132 LALVMSLKRSLDDINDQDVQVEVKKGVVYVSISD---KLLFKSGSYDITPKAETVLGKVA 188 Query: 257 EVLA-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 +V+ H I + GHTDA P A +DNW LS RA S + L GV+ +R++ Sbjct: 189 KVVNDHKDLDILVEGHTDAVPISTPAIKDNWDLSALRATSVVRTLQAKFGVAPERLTA-G 247 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDR 341 G + K + NRR +I++ + Sbjct: 248 GRSEFAPKDDNTTAVGRQQNRRTEIIITPK 277 >gi|78358626|ref|YP_390075.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221031|gb|ABB40380.1| chemotaxis protein MotB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 242 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 8/176 (4%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 + + L + M++ +RL+DL + + + + G+ I + Sbjct: 67 PQRILMVMELLESPRDVMQKPERLKDLLWPEDMLPPEVDTATLDENLRIMQDPQGLAIVL 126 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288 D +F S +L + +VL +S+ ++I GHTD SP + DN+ LS Sbjct: 127 TD---GVLFRPGSWELTAPARKLLAPLADVLEYSSADVTISGHTDDSPASGV--DNYDLS 181 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA + ++SG+ +R +SG+ + ++ + NRR++IL++ Q Sbjct: 182 GRRAMAVLDFFLESGLGAERF-SVSGYGPDKPLESNATPQGRAQNRRVEILLKTTQ 236 >gi|114320554|ref|YP_742237.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226948|gb|ABI56747.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 266 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 8/126 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 E +LI F S+ + +L + VLA I + GHTD P Sbjct: 112 VERLDENVLIRF---PEKAAFPSGSADVNASFLPILHTVAGVLAGQGGTIRVSGHTDDVP 168 Query: 277 F-RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD--PMNSANR 332 R NW LS RA +L+++ + R G A R + + NR Sbjct: 169 IDTERFRSNWELSTARATEVVHLLLEAAPIEPGRFIA-QGHADTRPLRPNTSPENRARNR 227 Query: 333 RIDILV 338 R+D+L+ Sbjct: 228 RVDVLI 233 >gi|46579053|ref|YP_009861.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough] gi|120603363|ref|YP_967763.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46448466|gb|AAS95120.1| chemotaxis protein PomB [Desulfovibrio vulgaris str. Hildenborough] gi|120563592|gb|ABM29336.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311232899|gb|ADP85753.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 257 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K + + + + +++ ++ P ++ ++L ++ + +++ Sbjct: 53 AKTDIAKFQAALGSIQDAFGVQRERPQDIEAAFSPTTESQVLITEKLDAAEQEQLEVARM 112 Query: 203 LSGLVAD--NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L LV + I K + GI + + + +F+ S+ LP+ V++ + +L Sbjct: 113 LKELVNEQAEIAKNAIISAEEGGINLRV---NSRALFEPGSARLLPDGEAVIRLVHTILL 169 Query: 261 HSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + GHT + PF + +W LS RA + + ++ GVS R+ + G+ R Sbjct: 170 KHKYDLIVEGHTGSREPFSSQFPTHWELSAARAVTLVRHILSLGVSPRRLKAV-GYGDTR 228 Query: 320 LKIA-SDPMNSANRRID 335 + +D NRR++ Sbjct: 229 PLVPENDDTGELNRRVE 245 >gi|317051549|ref|YP_004112665.1| OmpA/MotB domain-containing protein [Desulfurispirillum indicum S5] gi|316946633|gb|ADU66109.1| OmpA/MotB domain protein [Desulfurispirillum indicum S5] Length = 252 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 75/173 (43%), Gaps = 7/173 (4%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + ++ P+ + + +++++ I + + ++ V+ V + GI + Sbjct: 63 LGRQTEVSPVPVVVTAQIQEVEQIQMEEVINAIQAMVQVTGLEDSVE-VDSQQDTEGIKV 121 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNW 285 ++ ++ +FD+ + P +L ++ ++ S + I GHTD + NW Sbjct: 122 TLAEE---ILFDRGRAEIKPAAFPILDQLAAIIHQSKRKVRIEGHTDNVQVPASRYPTNW 178 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 LS R+ + + +++ + RI +G+ + + + + NRR++I Sbjct: 179 ELSTARSVNVVKYFVQARNLDPRIFVAAGYGEFSPVVPNITESNRAKNRRVEI 231 >gi|255068383|ref|ZP_05320238.1| OmpA family protein [Neisseria sicca ATCC 29256] gi|255047376|gb|EET42840.1| OmpA family protein [Neisseria sicca ATCC 29256] Length = 421 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 17/183 (9%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++ S+ + + ++ K+ ++ K++ ++ L +A + V E + Sbjct: 217 MQWSLGDDFDVASTKVNNLKLPSVTAKQQETQSTVRLRPLLENEIARKL---VSVEDFQD 273 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 ++I+ +F+ S+ + VL ++ + L I + G+TD P +++ Sbjct: 274 RSTVTIL---GDGLFESGSAQIQDQYYPVLARVSQALDSVEGQIVVTGYTDNQPIQSLNF 330 Query: 282 RDNWRLSLDRAYSAYQVLM----KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 NW LS RA + ++L+ GV RI + G +D + NRR++ Sbjct: 331 PSNWHLSQARADAVKEILLNYIKNGGV---RI-RSEGRGSTDPVAPNDTLENRAKNRRVE 386 Query: 336 ILV 338 I + Sbjct: 387 ITL 389 >gi|229827389|ref|ZP_04453458.1| hypothetical protein GCWU000182_02777 [Abiotrophia defectiva ATCC 49176] gi|229788327|gb|EEP24441.1| hypothetical protein GCWU000182_02777 [Abiotrophia defectiva ATCC 49176] Length = 305 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 125/331 (37%), Gaps = 35/331 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K ++ P +W ++D M +L+ FF++++ +++TD I + Sbjct: 1 MARKKKTEEAPAGAPAWMATFSDLMNLLLCFFVLLFSMSSTDRAKYNEIVE--------A 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +T+S IF S + + G + + + N + Sbjct: 53 VTSSFSIF----------------SGGGSALDQGILISSGVSQLNELAEYYSNLAVDNAA 96 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + N + + + + D + EE+ + K + K+ + Sbjct: 97 KEDGTKGGNGKSDNGKIENNNENKPDNNNNGKAEEDKEVTKDEVVKKYQKELKETAEKNY 156 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +K S ++ +++V+ + +T+ I +SI +FD S+ VL K Sbjct: 157 EKASEAINQFKLNDMVQ-LKMDTSYNYIGLSI---DGYFLFDSGSAELKKGADKVLDKAA 212 Query: 257 EVLAHS-TEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKI 312 +L I I GHTD P N ++N LS RA + + L + + ++S Sbjct: 213 GILMKFKDADIVIEGHTDNVPQTNTVKYKNNLWLSGARAMTVLEYLTEVEHMDPKKLSA- 271 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341 SG + ++ NRR++I + ++ Sbjct: 272 SGKGEYEPIASNKTAEGRQKNRRVEIKIFNK 302 >gi|222087026|ref|YP_002545561.1| OmpA family protein [Agrobacterium radiobacter K84] gi|221724474|gb|ACM27630.1| OmpA family protein [Agrobacterium radiobacter K84] Length = 321 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 103/319 (32%), Gaps = 18/319 (5%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 + +M V + ++ N + + + E+N + + + Sbjct: 4 LLMAIMFLLTVFVLGQFILSREITGRDEALNRLNSRINDLVEQLALEKNGKQDLEDSVAN 63 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L + +N + + E + S S+ + Sbjct: 64 LQASLSMAENERSRLQALLTAGSGNGQAAQQQVGTLTQELDEQKQASARALSQVELLNQQ 123 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDLAKKISSTLSGLVADNIVKGVL 216 L I E SK++ +K +RL + L+ +D + Sbjct: 124 IAALRSQIAAVEAALQASESKDQSSQVKIADLGRRLNVALAQRVQELNRYRSDFFGRLRE 183 Query: 217 FETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-------- 266 + R I I ++ +F ++ P + K+ L ++ I Sbjct: 184 ILSDRDNIRIVGDRFVFQSEVLFPSGAADLNPAGQTEMAKLAAALIDLSKEIPPEINWVL 243 Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + GHTD P R DNW LS RA + + L+ GV DR+ +GF + Sbjct: 244 RVDGHTDNVPLSGNGRYPDNWALSSARAIAVVKFLIAQGVPADRLVA-AGFGEFQPIAPG 302 Query: 325 DPMNSA--NRRIDILVEDR 341 D + NRRI++ + ++ Sbjct: 303 DTPEARATNRRIELKLTEK 321 >gi|149370978|ref|ZP_01890573.1| outer membrane protein, OmpA family [unidentified eubacterium SCB49] gi|149355764|gb|EDM44322.1| outer membrane protein, OmpA family [unidentified eubacterium SCB49] Length = 323 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 105/281 (37%), Gaps = 12/281 (4%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + +S G+ + ++ +K L++D + D G + + Sbjct: 40 ASLMSQLDNVEGASSIGLEQIKEDLQKCKSDKTQLAMDLAGAQAKYDKIKGDYDALEANS 99 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + N + + K DL + + K + + + + + Sbjct: 100 SENLSENLDRNRALLTELEAKERILNTKEADLIEQEKVLKRAQNNLDASAARVLELEGII 159 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++ ++ L IS+ L+ + G+ E + +S+ N +F+ S Sbjct: 160 AAKEAQMDALKNAISAALTSFEGN----GLTVEQREGKVYVSM---ENKLLFESGSWDVN 212 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS 302 + +G+VL + E+ + I GHTD P+ + + +DNW LS RA + +L ++ Sbjct: 213 SRGREAVVALGKVLGDNKEIAVLIEGHTDNVPYGEKGLIKDNWDLSTKRATAIVAILTEN 272 Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 +G + +++ + NRRI++++ + Sbjct: 273 NNIPKENLTAAGRGEYAPIASNNTSEGKAKNRRIEVVLTPK 313 >gi|332668363|ref|YP_004451151.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337177|gb|AEE54278.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 312 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 104/302 (34%), Gaps = 17/302 (5%) Query: 45 MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104 +AFF V+ + ++ K+ + + T + + N ++ + Sbjct: 8 LAFFCVLCLTFSSCVMKKQYLA---------MQTDLQTQLEAANKDLGKLGVSLNEYMSR 58 Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 ++G + Q Q K+ + DL K + Sbjct: 59 LAACERDKERLGGDIRTNQSAMQLREEQINDLKAQIADLKSQREKQLNTVTDLTKISSSA 118 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 KE L K L + R + ++ L G++ + + + Sbjct: 119 NDNIKETLAQLERKDKYIHLLQAARTRADSINLALAVNLKGVLKEGLDDKDVDVKVDK-- 176 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-AR 282 + ++ + +F S+ + VL KI ++L + + + G+TD P + Sbjct: 177 TVVFVNLSDKMLFQSGSATMTTKANEVLGKIAQILKSRPDLEVMVEGYTDNKPIKTACIE 236 Query: 283 DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 DNW LS+ RA + + L K GV +R+ +G + +D NRR I++ Sbjct: 237 DNWDLSVKRATAVARTLQKTHGVDPNRLIA-AGRGEYNALATNDTEEGRSTNRRTRIIIL 295 Query: 340 DR 341 + Sbjct: 296 PK 297 >gi|146338211|ref|YP_001203259.1| hypothetical protein BRADO1110 [Bradyrhizobium sp. ORS278] gi|146191017|emb|CAL75022.1| Putative flagellar motor protein MotB [Bradyrhizobium sp. ORS278] Length = 342 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 30/266 (11%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS-QQSEHCKNSLTRDSEKGKDLCKSTDL 163 + L+ G +N + + R++ L+N+ + N L R E K + Sbjct: 78 SLDDQVAQLRAGLSNAEAERDRIKGLYDGLANAGSNATGRANELNRALESEKQVTARALA 137 Query: 164 E--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD------ 209 + ++ ++ L + + + R+ DL +++ L+ V + Sbjct: 138 QIEVLNQQISALRRQLAALEDALDASEKRDKESQNRIADLGSRLNVALAQRVQELTRYRS 197 Query: 210 ---NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL------- 259 ++ +L ++ ++ FD + LPE L + L Sbjct: 198 EFFGRLRAILGNRPDIRVVGDRFVFQSEVFFDTGQATLLPEGQQELNSVATALIDLDKQI 257 Query: 260 -AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 A + V+ + GHTD P + + + NW LS RA S Q L+ GV R+ +GFA Sbjct: 258 PAEISWVLRVDGHTDVRPINSPVFKSNWELSSARAISVVQYLISLGVPAQRLVA-AGFAE 316 Query: 318 HRLKIASDPMNS--ANRRIDILVEDR 341 + ++ + NRRI++ + +R Sbjct: 317 FQPLDTANTDEAFRRNRRIELKLTER 342 >gi|228471996|ref|ZP_04056764.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276608|gb|EEK15321.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624] Length = 278 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + +L G++ + + + + + + +SI D+ +F S P VL K+ +V Sbjct: 117 LVQSLKGVLGNLDDEDITVQVDKGVVYVSISDKM---LFSSGSYNVTPRAREVLGKVAKV 173 Query: 259 LAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + + + GHTD P +N +DNW LS+ RA + ++L GV+ R++ +G Sbjct: 174 VNNKPDFEFMVEGHTDNVPIKNTCIKDNWDLSVLRATAVVRILQNDFGVTASRMTA-AGR 232 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341 + AS + NRR I+V + Sbjct: 233 GEYVPVTSNASADGRALNRRTRIVVLPK 260 >gi|23013938|ref|ZP_00053784.1| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S++K + + + + ++ L S L + + V GI+ Sbjct: 35 SMSKIDKNKYEQVQQGMAKDIGLRETKTPLQDLRSEMLGQVTGAGVEDTVDVGRDDKGIV 94 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIA- 281 +++ + MF S+ PE + ++++I L I I+GHTD +P R Sbjct: 95 LNL---ASGTMFKPGSAEVRPEILPLMKEISATLKQERFLNYQIDIQGHTDDTPVRTPQF 151 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMN-SANRR 333 NW LS RA S +V+ + G+ +R+ K++ A ++ + P N + NRR Sbjct: 152 PSNWDLSAARALSTLKVMNELGIPTNRM-KLAALADTAPRVPNRSDTGKAYPENQAINRR 210 Query: 334 IDILVEDR 341 ++I + R Sbjct: 211 VEIHIYPR 218 Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 16/174 (9%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF---------NPFGKNLMTA---- 79 W + YAD +T+LMAFF+V+ ++ D + + ++Q ++L + Sbjct: 15 WLLSYADMITLLMAFFIVLVSMSKIDKNKYEQVQQGMAKDIGLRETKTPLQDLRSEMLGQ 74 Query: 80 --SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+ D + ++L+ S +++ K+ +L+ Sbjct: 75 VTGAGVEDTVDVGRDDKGIVLNLASGTMFKPGSAEVRPEILPLMKEISATLKQERFLNYQ 134 Query: 138 QQ-SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 H ++ R + + S S K N P ++ K+ A+ Sbjct: 135 IDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGIPTNRMKLAALADTA 188 >gi|311696643|gb|ADP99516.1| flagellar motor protein MotB [marine bacterium HP15] Length = 277 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + ++ E + + + DLA ++ L VA + + + Sbjct: 85 PEPTESQTREPEFIDERAEGVAPTQIPGGVIDLASRMIRELESEVA---SEALSVNYDQN 141 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IA 281 ++I ++ F + PE I +++++ VL+ T + + G+TD P + Sbjct: 142 QVVIRFSEEAT---FRSGEAAIKPEMIPIIERVVNVLSACTGDVLVSGYTDDRPISSDRY 198 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 R NW LS RA S L+ V DR+ +G A +D + NRR++I + Sbjct: 199 RSNWDLSAARAVSVVHELVMNRQVPADRVVA-AGRAETNPLAPNDSPENRALNRRVEIAI 257 Query: 339 EDRQ 342 + + Sbjct: 258 RNPE 261 >gi|330876044|gb|EGH10193.1| flagellar motor protein MotD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 295 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L G++ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|221196011|ref|ZP_03569058.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221202685|ref|ZP_03575704.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221176619|gb|EEE09047.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221182565|gb|EEE14965.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 484 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +K++ D+A+ L L+ D I G + + S++ R MF Sbjct: 322 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 379 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296 + ++ KI +A ++I G+TD P R+ N LS +RA Sbjct: 380 RPGGASVQASMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSRQFASNQALSEERATQVM 439 Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 Q+L +GV +R+ + G A + + NRR++I Sbjct: 440 QMLQAAGVQANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 480 >gi|297180147|gb|ADI16369.1| flagellar motor protein [uncultured bacterium HF130_12L15] Length = 343 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 108/340 (31%), Gaps = 18/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + + + + + +M V + ++ + Sbjct: 5 RTRRRERGVDYWPGFVDALSTLLLAIMFLLSVFVLAQFLLSREITGKDEVLTRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E++ + + +L + +Q + Sbjct: 65 LTQLLALERSNTQDAEDQLANLQASLQAAETERSRLEQLLSQGAGADAAAEEEIGTLSGA 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDL 195 E + S S+ + L K I E ++++ + K +RL Sbjct: 125 LDEERQISQRALSQVELLNQQIAALRKQIGALEGALEVSEARDRESSTKIADLGRRLNVA 184 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + L+ +D + + R I I ++ +F S + + Sbjct: 185 LAQRVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGSEVINDAGRTEMA 244 Query: 254 KIGEVLAHSTEVI--------SIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303 K+ E + + I + GHTD P RDNW LS RA S + L+ G Sbjct: 245 KLAEAIIDLQKEIPPEINWVLRVDGHTDNVPLSGTGRYRDNWELSSARATSVVKYLISQG 304 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V R+ +GF + + D ++ NRRI++ + +R Sbjct: 305 VPASRLVA-AGFGEFQPLVEGDTPDARNKNRRIELKLTER 343 >gi|327188824|gb|EGE56018.1| putative outer membrane protein (OmpA protein) [Rhizobium etli CNPAF512] Length = 343 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK-NSLTRDSEKGKD 156 ++ ++ + + +L+ N + + RL+ + S Q + + ++T++ ++ K Sbjct: 71 LEKGSNQDLQDSVANLQASLANAEGERSRLQALLSAGSGGQDAAQKRIGAMTQELDEQKQ 130 Query: 157 LCKSTDLE--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV- 207 + + + ++ + L + + ++ DL +++ L+ V Sbjct: 131 VSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVALAARVQ 190 Query: 208 ------ADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 +D + + R I I ++ +F + PE + K+ L Sbjct: 191 ELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMAKLATAL 250 Query: 260 AHSTEVI--------SIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + I + GHTD P RDNW LS RA S + L+ GV DR+ Sbjct: 251 LDLAKEIPPEINWVLRVDGHTDNVPLAGTGRYRDNWELSSARATSVVKFLIGQGVPADRL 310 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +GF + D ++ NRRI++ + ++ Sbjct: 311 VA-AGFGEFQPIAPGDAPDARATNRRIELKLTEK 343 >gi|190893330|ref|YP_001979872.1| outer membrane protein (OmpA protein) [Rhizobium etli CIAT 652] gi|190698609|gb|ACE92694.1| probable outer membrane protein (OmpA protein) [Rhizobium etli CIAT 652] Length = 343 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 106/274 (38%), Gaps = 31/274 (11%) Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK-NSLTRDSEKGKD 156 ++ ++ + + +L+ N + + RL+ + S Q + + ++T++ ++ K Sbjct: 71 LEKGSNQDLQDSVANLQASLANAEGERSRLQALLSAGSGGQDAAQKRIGAMTQELDEQKQ 130 Query: 157 LCKSTDLE--------KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV- 207 + + + ++ + L + + ++ DL +++ L+ V Sbjct: 131 VSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVALAARVQ 190 Query: 208 ------ADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 +D + + R I I ++ +F + PE + K+ L Sbjct: 191 ELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMAKLATAL 250 Query: 260 AHSTEVI--------SIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + I + GHTD P RDNW LS RA S + L+ GV DR+ Sbjct: 251 LDLAKEIPPEINWVLRVDGHTDNVPLVGTGRYRDNWELSSARATSVVKFLIGQGVPADRL 310 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +GF + D ++ NRRI++ + ++ Sbjct: 311 VA-AGFGEFQPIAPGDAPDARATNRRIELKLTEK 343 >gi|315654589|ref|ZP_07907495.1| OmpA/MotB domain protein [Mobiluncus curtisii ATCC 51333] gi|315491053|gb|EFU80672.1| OmpA/MotB domain protein [Mobiluncus curtisii ATCC 51333] Length = 308 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 105/326 (32%), Gaps = 71/326 (21%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K+ P+N W + Y D +TV+M FLV++ I+ D + +L Sbjct: 1 MAKRKHECPEPDNTERWAVSYLDMITVMMCLFLVLYAISQVDQGKLSKL-------RTSL 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 NP + + I + ++ Sbjct: 54 AAGFNSTIQIANPLQTNGGLGI--------------------------------LAGSTS 81 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + Q +L ++ E E + S + + +++L+D Sbjct: 82 AVQLGTLMGNLNQNPES--------------QPERIQAMREASHLNSIKKQVEEQLKDAG 127 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+ + T G+++ ++ N F + P VL+ I Sbjct: 128 KE--------------GSLAMRITDKGLVLGMV--ANDTYFKTGDATIQPTAREVLKAIS 171 Query: 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L E I+I G+ D P + N+ L+ RA L GV ++ IS Sbjct: 172 PTLMSIEEGIAIEGYADPQPIASAKFPSNYHLASARAIEVLIALKDDGVPGTKLRSISYG 231 Query: 316 AHHR-LKIASDPMNSANRRIDILVED 340 A H+ + NRR+DI++ Sbjct: 232 ADHQTEATPGQDAWAFNRRVDIVIMS 257 >gi|28869189|ref|NP_791808.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852429|gb|AAO55503.1| motB protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 295 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L G++ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|330961246|gb|EGH61506.1| flagellar motor protein MotD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 265 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 70/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLLKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLLKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDN 284 + I + ++ +F ++P + +++K+ ++ I + G TD P + N Sbjct: 130 VEI-ELNSSMLFGSGDAMPSDKAFSIIEKVSGIVKRFDNPIHVEGFTDDQPINTSQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + L E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLLKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLLKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|213967534|ref|ZP_03395682.1| motB protein [Pseudomonas syringae pv. tomato T1] gi|301382871|ref|ZP_07231289.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato Max13] gi|302062803|ref|ZP_07254344.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato K40] gi|302131302|ref|ZP_07257292.1| flagellar motor protein MotD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927835|gb|EEB61382.1| motB protein [Pseudomonas syringae pv. tomato T1] Length = 295 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L G++ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGINPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 243 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLIKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|332521842|ref|ZP_08398291.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332042514|gb|EGI78716.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 282 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 23/244 (9%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTD 162 T + Q L++ + + +S Q+ E K+ ++ K++ KS + Sbjct: 36 TATVKLNKCLADEAASAARLQELKDRLADMKSSNQALIETSKDLTVLTTQGAKNVEKSLE 95 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 K + + + L+K+ + + + L K++ + + ++ Sbjct: 96 SLKEKDLKISRLQDALTKKDSVTLAL---VTSLKKEVGLN---------DEDIEINVEKS 143 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 + IS+ D +F S +L K+ V+ + GHTD P+ Sbjct: 144 VVFISLSD---KLLFKSGSYNITSRAKEILAKVATVINGKPNFEAMVEGHTDNVPYNRGG 200 Query: 282 --RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 +DNW LS+ R+ S + L + GV +++ +G H +++D + NRR I Sbjct: 201 VLQDNWDLSVKRSTSIVRALQELGVKPEQLIA-AGRGDHLPLVSNDTAENRAINRRTKIY 259 Query: 338 VEDR 341 + + Sbjct: 260 ILPK 263 >gi|237799262|ref|ZP_04587723.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806231|ref|ZP_04592935.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022118|gb|EGI02175.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027345|gb|EGI07400.1| flagellar motor protein MotD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 296 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S E + + LQ +A+ + +++K + Sbjct: 75 STKPAEPLLKESEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ +++ I + G TD P R N Sbjct: 130 IEI-ELNSSLLFVSGDAMPSDKAFTIIEKVSDIVKRFDNPIHVEGFTDDQPIRTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + A+ + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPVASNATAAGRAKNRRVVLVI 243 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQPEEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + L E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSTKPAEPLLKESEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|224371370|ref|YP_002605534.1| MotB4 [Desulfobacterium autotrophicum HRM2] gi|223694087|gb|ACN17370.1| MotB4 [Desulfobacterium autotrophicum HRM2] Length = 425 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 21/244 (8%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 ++ + Q + + Q E + ++ +D + ++ + Sbjct: 183 AQKEIEAQEIRIQALSAVLASQKEAVAREKQLSATARAEVTLLSDQITRLREQLSMISNA 242 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-----ISI---- 228 LS ++ +++ DL K+++ L+ V + F IL + I Sbjct: 243 LSLANTQTQEKDEKIVDLGKQLNIALARKVNELEKYQSEFFGRLRKILGNNPAVQIEGDR 302 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNI 280 + +F+ S++ + + L + E L + I I GHTD P N Sbjct: 303 FVLQAGLLFESGSAVLGDQGRIHLTTLAETLMDIAKKIPDDINWILRIDGHTDRVPINNA 362 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 A NW LS RA + + L + GV E R++ +GF+ + +D + NRRI+I Sbjct: 363 AFPSNWELSAARAVAVVRFLSQRGVPEKRMAA-AGFSKYHPIDRADTPAAYQRNRRIEIK 421 Query: 338 VEDR 341 + + Sbjct: 422 LTRQ 425 >gi|88802157|ref|ZP_01117685.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P] gi|88782815|gb|EAR13992.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P] Length = 278 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 12/254 (4%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + + L D+ T+ + + + + E + KN+L + Sbjct: 19 SKKEFVALQADKTKTQEELVAVKSNLQKCIIDKEKEVLSLEERVKYLQDDKKNALKQVEN 78 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 S+D K++ + + ++ + ++ + ++ L+ + D Sbjct: 79 LTVLTQSSSDNIKTVIAQLSEKDKYINGVREAMTQKDSINLAIKYHLTKNLTEGIQD--- 135 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 K + +T + ISI D +F S VVL+KI +V+ E + I GH Sbjct: 136 KDIEVNVEKTVVFISISD---KLLFKSGSYNVTDGAYVVLEKIAKVINDQPEMEVMIEGH 192 Query: 272 TDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN- 328 TD+SP R I +DNW LS RA + ++L K GV +R+ + + + +D Sbjct: 193 TDSSPIKREIIQDNWDLSALRATAITRILQYKFGVQPNRLIAAA-RSQYVPLAPNDTAEN 251 Query: 329 -SANRRIDILVEDR 341 S NRR I++ R Sbjct: 252 KSKNRRTKIIIMPR 265 >gi|83311658|ref|YP_421922.1| flagellar motor protein [Magnetospirillum magneticum AMB-1] gi|82946499|dbj|BAE51363.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1] Length = 220 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 19/187 (10%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 I+K + + + I + K LQDL ++ ++G + V GI++ Sbjct: 41 IDKNKYEQVQQGMAKDIGLRETKTPLQDLRSEVLGQVAGA---GVEDTVDVGRDDKGIVL 97 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIA-R 282 ++ + MF S+ PE + ++++I L I I+GHTD +P R Sbjct: 98 NL---ASGTMFKPGSAEVRPEILPLMKEISGTLKQERFLNYQIDIQGHTDDTPVRTPQFP 154 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMN-SANRRI 334 NW LS RA S +V+ + G+ R+ K++ A ++ + P N + NRR+ Sbjct: 155 SNWDLSAARALSTLKVMNELGIPTSRM-KLAALADTAPRVPNRSDTGKAYPENQAINRRV 213 Query: 335 DILVEDR 341 +I + R Sbjct: 214 EIHIYPR 220 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 16/190 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF------- 69 + K + W + YAD +T+LMAFF+V+ ++ D + + ++Q Sbjct: 1 MSKSKFHKENKEAAEDWLLSYADMITLLMAFFIVLVSMSKIDKNKYEQVQQGMAKDIGLR 60 Query: 70 --NPFGKNLMT------ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 ++L + A G+ D + ++L+ S +++ Sbjct: 61 ETKTPLQDLRSEVLGQVAGAGVEDTVDVGRDDKGIVLNLASGTMFKPGSAEVRPEILPLM 120 Query: 122 KQYQRLENNIFYLSNSQQ-SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 K+ +L+ H ++ R + + S S K N P S+ Sbjct: 121 KEISGTLKQERFLNYQIDIQGHTDDTPVRTPQFPSNWDLSAARALSTLKVMNELGIPTSR 180 Query: 181 EKILAMKRKK 190 K+ A+ Sbjct: 181 MKLAALADTA 190 >gi|307944516|ref|ZP_07659856.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4] gi|307772265|gb|EFO31486.1| OmpA/MotB domain protein [Roseibium sp. TrichSKD4] Length = 344 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 104/310 (33%), Gaps = 16/310 (5%) Query: 44 LMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID 103 ++A F + ++ D + Q + + L G + ++ + D + + Sbjct: 39 MLAQFFLSQQLSGRDTVLNRLNAQ-ISELTQLLALERAGARELEDTITGLQASLSDATGE 97 Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 ++ G + N+ + + + Sbjct: 98 RDRLLGLLESSSGEADAAGGKAAQLENLLDDEKQVSQRALAQVELLNQQISALRRQLAAA 157 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 ++ E +K L + L +++S S ++ +L + + Sbjct: 158 NAALEASEAKENQSQAKIASLGKRLNAALVQRVQELSRYRSDFFGR--LREILSQRSDIR 215 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDAS 275 ++ ++ +F S PE V L+K+ + + I + GHTDA Sbjct: 216 VVGDRFVFQSEVLFGSGSEDINPEGQVELKKLADAIKELAVQIPDEINWVLRVDGHTDAR 275 Query: 276 PFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 P R +NW LS RA S + L+ G+ R+ +GF + D + N Sbjct: 276 PLSGTGRLRNNWELSAARAISVVRYLVDQGIDPKRLVA-AGFGEFQPLEEGDTPEALAKN 334 Query: 332 RRIDILVEDR 341 RRI++ + +R Sbjct: 335 RRIELKLTER 344 >gi|188581568|ref|YP_001925013.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179345066|gb|ACB80478.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 337 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 107/297 (36%), Gaps = 28/297 (9%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130 F +T + + N + + L + + +T + +R Sbjct: 42 FLSQELTGRDAVLNRLNRQIADLTDLLALERSGRRAQEEAAAGLRNTLTATEAERDRLRA 101 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184 + S + Q + +E+G +E +++ ++ L+ + Sbjct: 102 LADASEAAQGKSADVDAQLAAERGATQRAQNQVELLNEQIRALRRQLAALEDALAASESR 161 Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235 + + R+ +L +++ L+ V + ++ ++ T I+ ++ Sbjct: 162 DRESQARIAELGSRLNVALAQRVQELARYRSDFFGRLRQIIGSRTDVRIVGDRFVLQSEV 221 Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286 +F S+ PE L +I + A V+ + GHTDA P ++ NW Sbjct: 222 LFAAGSAALKPEAGPELDRIAGAILDIAKEIPADIPWVLRVDGHTDARPIQSAQFPSNWA 281 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 LS RA + Q L G+ R+ F + + S+ + NRRI++ + +R Sbjct: 282 LSAARAIAVVQYLRTKGIPPQRLLA-GAFGEFQPLDSGTSEDAYARNRRIEMKLTER 337 >gi|323528401|ref|YP_004230553.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323385403|gb|ADX57493.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 233 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K++ S L+ L + + + T G+ I+I +F+ + LPE+ VL +I Sbjct: 92 KKQLLSLLAPLQDN---RQITISHTPQGVEIAI---NAKVLFNSGDARLLPESFAVLGQI 145 Query: 256 GEVLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 VL + I + GHTD+ P NW LS RA + + G+ R++ I Sbjct: 146 ATVLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAGAVVRFFADRGIEAHRMAAI- 204 Query: 314 GFAHHRLKI 322 G A + I Sbjct: 205 GRADNFPLI 213 Score = 43.7 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 19 KKVAIDDTPNNLGS-----WKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 K + G W I YAD +T LM FL ++++ + + Sbjct: 14 KTGHHGHDGAHDGGEQPDRWLISYADLITTLMVLFLALYVLQLAKNSELQ 63 >gi|317133447|ref|YP_004092761.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3] gi|315471426|gb|ADU28030.1| OmpA/MotB domain protein [Ethanoligenens harbinense YUAN-3] Length = 259 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 85/209 (40%), Gaps = 13/209 (6%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 ++ Q++ ++ + + + + + ++ N + ++++ ++Q Sbjct: 36 KTDVQKASQVAEAIRKGFNASQQAVQQSPVSQNTNSTNITMSNTSTTSEVIS-----QVQ 90 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D + + + K V +T G++I++ D ++ S++ ++ Sbjct: 91 DWSSLYDQVTKLVAQAGLQKNVDLSSTSKGLVITLKDNT---LYTPGSAVMNQPGQDLVL 147 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +IG+ L I + GHTD+ P N DN LS RA + + L+ G+ +I+ Sbjct: 148 RIGDALKQVNYALIIVEGHTDSDPIHNAQFQDNIELSSARADNVERALIGRGLDAAKIAA 207 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILV 338 + G +D + NRR+ I + Sbjct: 208 M-GRGDTVPVAPNDTPANKAKNRRVVITI 235 >gi|229917739|ref|YP_002886385.1| OmpA/MotB domain protein [Exiguobacterium sp. AT1b] gi|229469168|gb|ACQ70940.1| OmpA/MotB domain protein [Exiguobacterium sp. AT1b] Length = 259 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 9/208 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S + L + S+ + + N + K A R L L + Sbjct: 37 ASSNIDQTKLEKMSQSFNQVFSGGVSVFQASTASNSDIERTDKTNTTANPRTYELAQLDE 96 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + + +G++++I D +F+ + + V Q I + Sbjct: 97 LKEDVNKYIKKNGLESQIKATINSSGLVLTIQD---RALFNLGEATLDADARAVAQNISQ 153 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISG 314 +L + + I + GHTD P NW LS RA + +L ++ + + S Sbjct: 154 ILEKAGKREIVVSGHTDNIPINTARFPSNWELSSARATAFMRGLLANDALNPAQFTLAS- 212 Query: 315 FAHHRLKIASDPM--NSANRRIDILVED 340 + + +D S NRR+++L++ Sbjct: 213 YGEFKPIATNDTEEGRSKNRRVEVLIKP 240 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K+K D + W I YAD +T+L+A F+V++ + D + + Q FN Sbjct: 1 MKRKKKHDHEEHIPEGWLIPYADLLTLLLALFIVLFASSNIDQTKLEKMSQSFNQVFSGG 60 Query: 77 MTASKGIFDEQNPPERSSQNK 97 ++ + + ER+ + Sbjct: 61 VSVFQASTASNSDIERTDKTN 81 >gi|149918478|ref|ZP_01906968.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1] gi|149820778|gb|EDM80188.1| putative chemotaxis MotB protein [Plesiocystis pacifica SIR-1] Length = 258 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 15/236 (6%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + ++ E +S + +E + ++ K Sbjct: 23 EAQEALAAKQAEVTELQKELDSKSALSEQHEAAIAELKAEQEAHVATQEKATKLAAKVED 82 Query: 177 PLSKEKILAMKRKKRLQDLA--KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 SK L + KK+ + LA K + TLS + + I G + + R G L+ +D + Sbjct: 83 LESKAGSLEGELKKKDKALAAVKALQETLSKSLVEEIETGDIRVSERHGYLV--VDVSDK 140 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIA-----RDNWRL 287 +F + +L ++ E L + V + GHTD P ++ NW L Sbjct: 141 VLFATGEATLSERGKKLLGRLAESLLTLPKDSVFQVGGHTDNQPIKSEEVLANFPTNWEL 200 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 S RA + + L + V R+ +GF+ R ++ + NRRI+I + Sbjct: 201 SASRATNVVRFLEEECSVPGARLVA-AGFSEFRPVSSNKKAKGRAKNRRIEIALLP 255 >gi|171060724|ref|YP_001793073.1| hypothetical protein Lcho_4056 [Leptothrix cholodnii SP-6] gi|170778169|gb|ACB36308.1| type IV / VI secretion system protein, DotU family [Leptothrix cholodnii SP-6] Length = 460 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI------SIIDQRNTPMFDKSSSIPLPETIVVL 252 +++ + + E +++ S++ R +F+ S+ +L Sbjct: 286 VAAVAQPAPQPRLATFLRPEIAEGAVVVRDEVDRSVVTLRGDGLFEPGSATLAAPKEALL 345 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +++ + LA + + GHTD+ P R+ NW LS +RA + ++L+ V+ +R+ + Sbjct: 346 RRVADALAQFGGAVLVTGHTDSQPIRSARFPSNWHLSQERAGAVRELLVSQQVATERV-R 404 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILV 338 G A +A+D + NRR++I + Sbjct: 405 AEGRADGEPVVANDSAGNRALNRRVEITL 433 >gi|37676652|ref|NP_937048.1| hypothetical protein VVA0992 [Vibrio vulnificus YJ016] gi|37201195|dbj|BAC97018.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 442 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 10/179 (5%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 EKS SKE +A +I +L+ + ++K + Sbjct: 257 EKSDQTFSQLMNLVPSKEIENQSADYISSLAVANQIQRSLATEIEMGLLK---VDALPDR 313 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR 282 + I+ +F+ S+ + V+ K+ L + I + GHTD +P + Sbjct: 314 VRITFQSND---LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFP 370 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 NW LSL RA + L +G R+ G R ++++ S NRR++I + Sbjct: 371 SNWHLSLARATALTDRLASAGKLSGRVIP-EGMGDARPLVSNETVEGRSINRRVEIDLL 428 >gi|312891209|ref|ZP_07750731.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311296376|gb|EFQ73523.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 267 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 15/213 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 K++L+ +++ L + + S + + LS + R K ++D+ +K Sbjct: 48 ADLKSNLSSLNDRYNALDEKYNGLNSRYTASSSKVSQLSTDLQKREARLKEVEDILRKRD 107 Query: 201 STLSGLVADNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVLQK 254 + L ++ L ++G+ + I + + +F S + + L++ Sbjct: 108 EATNAL--KEKLQKALLGFQQSGLTVDIRNGKVYVSLADKLLFPSGSIVIDEKGKSALKQ 165 Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310 + VL ++ I++ GHTD N+ +DNW LS+ RA S + L V R++ Sbjct: 166 LAAVLNKEPDIYIAVEGHTDDKKVINLGQIKDNWDLSVLRATSVTRYLTETEKVDPVRLT 225 Query: 311 KISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 +G + + + NRRI+I++ R Sbjct: 226 A-TGKGQFQPIDPAGTPEARAKNRRIEIVLSPR 257 >gi|54307864|ref|YP_128884.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9] gi|46912290|emb|CAG19082.1| hypothetical protein PBPRA0661 [Photobacterium profundum SS9] Length = 439 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 8/147 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 KI L V ++ E I I+ N +F S+ +L KI Sbjct: 294 KIQQLLQSEVERGLL-----EFEEHADRIRIVLNSND-LFASGSNEVKASIAPILSKIAH 347 Query: 258 VLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGF 315 L + I I GHTD P + NW LSL RA + VL R+ + G Sbjct: 348 TLESTNGRIMIVGHTDDKPIFTSKYPSNWHLSLARATAVANVLAMGTELRGRLWPEGQGD 407 Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQ 342 A+ R S ++NRR++I + +Q Sbjct: 408 ANPRNPNTSKANRASNRRVEIDLLYQQ 434 >gi|283853943|ref|ZP_06371147.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283570664|gb|EFC18720.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 357 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 9/185 (4%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + +++ + K ++ A + +++ +L S ++ L + K + Sbjct: 35 PEALENLTSQLFRSKEEERKAELRATELERKAGELQTAYDSLVADLKGEVDSKEIRVRQF 94 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 R + I+ +D +F S+ P VL K+ VL + I + GHTDA P + Sbjct: 95 REMLEINFVD---KILFGSGSADISPRGREVLLKVAAVLGKVKDKSIYVVGHTDAQPIHS 151 Query: 280 I-ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 NW LS R+ S + L G++ +R + + G + ++ ++ NRR+D Sbjct: 152 ALYPSNWELSTARSSSVIRFLSETGGLTPERFTAM-GRSFYQPVASNATAEGRQENRRVD 210 Query: 336 ILVED 340 I+V D Sbjct: 211 IIVAD 215 >gi|256370966|ref|YP_003108790.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007550|gb|ACU53117.1| OmpA/MotB domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 258 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 10/151 (6%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +A++++ L+ A + + + G+++ I+ + F S+ P V+ Sbjct: 105 QIAQEVNQALA---AQGLSQDAQVVVEQRGVVVRIL--SDKVFFATDSAALGPVGDAVVD 159 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 I VL +SI G+TD+ P N+ LS RA + + L K G++ DR+S Sbjct: 160 AIAGVLRTLPNDVSIEGYTDSEPIVGGPYSSNFELSAVRAVTVLERLWKVDGINPDRLSA 219 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVED 340 +GF + + + NRR+DI++ Sbjct: 220 -TGFGDTHPLVPNTTPQNMAMNRRVDIVILS 249 >gi|313205304|ref|YP_004043961.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312444620|gb|ADQ80976.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 294 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 93/217 (42%), Gaps = 19/217 (8%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-- 197 S + + + + G+ + K+ + + L+ ++ L +R+ L DL K Sbjct: 71 SNLKASIVKLEKQNGELMDKNLSQNQQFSNSLKQKSAELAAKEKLLQERENALNDLKKVV 130 Query: 198 ----KISSTLSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 I+ L+ ++ D ++ + E + +S+ D +F S+ + I Sbjct: 131 ARQDSITKRLNNVLRDALLGFKSDELSVEIKNGKVYVSMSD---KLLFKSGSAAIESKGI 187 Query: 250 VVLQKIGEVLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSG-VSE 306 ++ + +VL + I + GHTD P + DNW LS+ RA S ++L ++ Sbjct: 188 DAIKVLADVLNKNAEIDILVEGHTDNIPIKTALYQDNWDLSVARAISIVRILTNEYRIAP 247 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 R++ SG + ++ ++NRR +I++ + Sbjct: 248 TRLTA-SGKGEFSPRASNATPEGRASNRRTEIILSPK 283 >gi|217978498|ref|YP_002362645.1| type IV / VI secretion system protein, DotU family [Methylocella silvestris BL2] gi|217503874|gb|ACK51283.1| type IV / VI secretion system protein, DotU family [Methylocella silvestris BL2] Length = 494 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 11/146 (7%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++I L+ +A K V T T I I + D +F + P+ + ++I Sbjct: 352 QRIRLALAPEIA---AKKVDATQTATKIRIIVGDL---VLFPSGQANVKPQFEPIAKRIA 405 Query: 257 EVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + L I+I GHTD + NW LS+ RA + VL RI + G Sbjct: 406 QTLEKEPGAITIVGHTDNVKLQATSPFDSNWTLSMARAKAVAAVLKPGLSEPARIE-VDG 464 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 A + +D + NRR++I++ Sbjct: 465 KADEQPIAPNDTPAGRAQNRRVEIML 490 >gi|46581013|ref|YP_011821.1| chemotaxis MotB protein [Desulfovibrio vulgaris str. Hildenborough] gi|120601691|ref|YP_966091.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450434|gb|AAS97081.1| chemotaxis MotB protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120561920|gb|ABM27664.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311234697|gb|ADP87551.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 243 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A+K+ L G+ + + + + M+ S+ PE VL Sbjct: 90 IAQKLRQMLMADATPQSASGISADDVGVQLRV-----NSDIMYAPGSAELAPEGAKVLDD 144 Query: 255 IGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKI 312 + +L + +RGHTD+ P +I NW LS RA +A + ++ G + R+ I Sbjct: 145 VIRILKEYNLYLVVRGHTDSGEPRNSIYPSNWELSGARAAAAVRYIITHGEIKPTRLRSI 204 Query: 313 SGFAHHRLKIASD--PMNSANRRID 335 + +A R + + NRR++ Sbjct: 205 A-YADTRPLEPNTSPDSRAKNRRVE 228 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SWK+ YADF+T +MAFFL+MWI+N T +TK+ + YF+ + S + N P Sbjct: 9 SWKVAYADFVTAMMAFFLLMWILNMTSKETKEGLAGYFSSDAAKM--QSNNVSPVANNPF 66 Query: 92 RSSQNKID 99 S +K+D Sbjct: 67 VQSTDKLD 74 >gi|330880603|gb|EGH14752.1| flagellar motor protein MotD [Pseudomonas syringae pv. glycinea str. race 4] Length = 262 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 10/176 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 42 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 96 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F +IP + +++K+ ++ I + G TD P N Sbjct: 97 IEI-ELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTN 155 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 156 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIAPNTTAAGRAKNRRVVLVI 210 >gi|325525952|gb|EGD03644.1| hypothetical protein B1M_15465 [Burkholderia sp. TJI49] Length = 360 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%) Query: 185 AMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +KR+ ++A+ + L L+ D I G + + S + R MF Sbjct: 198 SADVQKRIAEIARMTPPPAPPVQLHLRQLLKDEIAAGTV--SVDEDARRSAVTFRGDAMF 255 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAY 296 + ++ KI +A ++I G+TD P R+ N LS +RA Sbjct: 256 LPGGASVQASMNPLIAKIAAEIAKVPGKVTIIGYTDNVPIRSRQFSSNQALSEERATQVM 315 Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 Q+L +GV +R+ + G A + + NRR++I Sbjct: 316 QMLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 356 >gi|297181726|gb|ADI17907.1| flagellar motor protein [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 524 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 181 EKILAMKRKKRLQDL----AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 E + A++ ++RL++L + I S +SG+ + + +T+++ +++ + + Sbjct: 362 EALNAVEVQERLENLEMTKSDDIMSEISGMAEEA---DLDVDTSKSKVIVRV---PGASL 415 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294 F + + VL + + I ++GHTD P NW LS RA + Sbjct: 416 FKPAQATLQLSARPVLDAVINTVNKYPDYKIHVQGHTDDDPISTAMFPTNWELSAARATA 475 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + G +R++ +G+A ++++ + NRR++ ++E + Sbjct: 476 VLRYFIDKGADPERMTA-TGYADIFPLVSNETPYGRAKNRRVEFVLEKEK 524 Score = 41.4 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 W ++D +T++M FF++M+ I + + T K+ Sbjct: 308 HVCEEGAPLWMATFSDMVTLVMVFFILMYAIASKNVQTFKS 348 >gi|254561554|ref|YP_003068649.1| flagellar motor protein MotB [Methylobacterium extorquens DM4] gi|254268832|emb|CAX24793.1| flagellar motor protein MotB [Methylobacterium extorquens DM4] Length = 337 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 106/297 (35%), Gaps = 28/297 (9%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130 F +T + N + + L + + +T + +R Sbjct: 42 FLSQELTGRDAVLTRLNRQIADLTDLLALERSSRRAQEEAASGLRNTLTATEAERDRLRA 101 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184 + S + Q + +E+G +E +++ ++ L+ + Sbjct: 102 LTDASEAAQGKSADVDAQLAAERGATQRAQNQVELLNEQIRALRRQLAALEDALAASESR 161 Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235 + + R+ +L +++ L+ V + ++ V+ T I+ ++ Sbjct: 162 DRESQARIAELGSRLNVALAQRVQELARYRSDFFGRLRQVIGSRTDVRIVGDRFVLQSEV 221 Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286 +F S+ PE L +I + A V+ + GHTDA P ++ NW Sbjct: 222 LFAAGSAALKPEAGPELDRIAGAILDIAREIPADIPWVLRVDGHTDARPIQSAQFPSNWA 281 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 LS RA + Q L G+ R+ F + + S+ S NRRI++ + +R Sbjct: 282 LSASRAIAVVQYLRSKGLPPQRLLA-GAFGEFQPLDSGTSEEAYSRNRRIEMKLTER 337 >gi|319790060|ref|YP_004151693.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] gi|317114562|gb|ADU97052.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] Length = 254 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 13/134 (9%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGH 271 G T +LI + N +F ++S PE L +I +++ + + + GH Sbjct: 91 GYQIVVTENYVLIRLF---NKVLFKQNSLELTPEAKRALDQIAKIIKNLKGNYMVRVEGH 147 Query: 272 T----DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP 326 T P NI W LS+ RA + + L+ GV R+ + G+ R ++P Sbjct: 148 TSKDEPTVPMPNIQDS-WDLSIRRATTVVRYLISRGVDPSRLMAV-GYDATRPLYTWNNP 205 Query: 327 -MNSANRRIDILVE 339 + + NRR++I ++ Sbjct: 206 ILQARNRRVEIYIQ 219 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + + +W ++D M++L+ FF++++ ++ D YF Sbjct: 1 MARRKKEECKS--VPAWLTSFSDLMSLLLTFFILLYSMSTLDITKAMKFLSYFQGEKAQT 58 Query: 77 M 77 Sbjct: 59 F 59 >gi|326316328|ref|YP_004234000.1| type IV / VI secretion system protein, DotU family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373164|gb|ADX45433.1| type IV / VI secretion system protein, DotU family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 450 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT--------PMFDKSSSIPLPETI 249 K+ S ++ ++ L R G+ + + DQ + +F+ +S+ P + Sbjct: 271 KMPSVVAVAPPKPRLRQFLEPEIREGL-VEVNDQADRSTVTLRGDGLFEPASTEVKPRYV 329 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 V+Q++ L + + + G++D P R NW LS +RA + +L ++ R Sbjct: 330 AVIQRVASALNEVSGKVVVNGYSDNQPIRTARFPSNWHLSQERAQAVAAMLQRTITDGSR 389 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + G A + + NRR++I++ Sbjct: 390 VKA-EGRAESDPIAPNSTPEGRALNRRVEIVLL 421 >gi|307300434|ref|ZP_07580214.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] gi|307318299|ref|ZP_07597734.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306895981|gb|EFN26732.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306904600|gb|EFN35184.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] Length = 342 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQN 96 T+LMA ++ + + I N + ++ + E++ + + Sbjct: 22 LSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 81 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 +L ++ ++ + + S+ + S S+ Sbjct: 82 LANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIELL 141 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------AD 209 + L I E L + + ++ DL ++++ L+ V +D Sbjct: 142 NQQIAALRSQIAAIEGA----LQASEAKDDASQAKIADLGRRLNVALAQRVQELNRYRSD 197 Query: 210 NIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 + + R I I ++ +F S PE + K+ L Sbjct: 198 FFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGSDLNPEGQTEMAKLATALLDLAKEIP 257 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 A V+ + GHTD I R DNW LS RA S + L+ GV DR+ +GF Sbjct: 258 AEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AGFGE 316 Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341 ++ + + NRRI++ + ++ Sbjct: 317 YQPIAPGESQEARAQNRRIELKLTEK 342 >gi|15966529|ref|NP_386882.1| hypothetical protein SMc03992 [Sinorhizobium meliloti 1021] gi|15075800|emb|CAC47355.1| Hypothetical protein signal peptide [Sinorhizobium meliloti 1021] Length = 344 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQY---FNPFGKNLMTASKGIFDEQNPPERSSQN 96 T+LMA ++ + + I N + ++ + E++ + + Sbjct: 24 LSTLLMAIMFLLSVFVTAQFLLGREISGKDEVLNRLNSQINELTQLLALEKSGKQDLEDS 83 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 +L ++ ++ + + S+ + S S+ Sbjct: 84 LANLQASLSQSEGERSRLQALLDRGAGSAEVADEKIGRLGSELENERQVSARAMSQIELL 143 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------AD 209 + L I E L + + ++ DL ++++ L+ V +D Sbjct: 144 NQQIAALRSQIAAIEGA----LQASEAKDDASQAKIADLGRRLNVALAQRVQELNRYRSD 199 Query: 210 NIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 + + R I I ++ +F S PE + K+ L Sbjct: 200 FFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGSDLNPEGQTEMAKLATALLDLAKEIP 259 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 A V+ + GHTD I R DNW LS RA S + L+ GV DR+ +GF Sbjct: 260 AEINWVLRVDGHTDDVQLSGIGRFRDNWELSSARATSVVKFLISKGVPADRLVA-AGFGE 318 Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341 ++ + + NRRI++ + ++ Sbjct: 319 YQPIAPGESQEARAQNRRIELKLTEK 344 >gi|4928701|gb|AAD33691.1|AF136403_3 RpmB [Pseudomonas aeruginosa] Length = 146 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 +N+Q II+K+ V ++ GSWKI +ADF T +MAFFLV+W++++ + KKAI YF Sbjct: 2 DNNQPIIVKR-VKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYF 60 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +AS + D P + ++ + +S + +I + Sbjct: 61 QDPIGFSESASPYVIDLGGTPTPAPDKTLNPQVQAQ--PDSNESRISPEQDHQVNADQAE 118 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDL 157 N+ ++ L + +L Sbjct: 119 NLAEQVERERLALLLQELQNKVDHMGEL 146 >gi|119900180|ref|YP_935393.1| hypothetical protein azo3891 [Azoarcus sp. BH72] gi|119672593|emb|CAL96507.1| putative outer membrane protein [Azoarcus sp. BH72] Length = 434 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 9/177 (5%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGI 224 ++N+ + + K+ + + K+ L G +A I +G V Sbjct: 257 ALNRHSDPAFAQILGLKVPPPAPLAQAAAVPAKVPDRLQGFLAPEIREGLVTVRDLPDRS 316 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RD 283 ++ I + +F+ +S+ P + ++ +IGE +A + +RGH+D P R+ Sbjct: 317 VVQI---QGDGLFEPASATLAPRVLPLMARIGEAVARVKGSVLVRGHSDDRPIRSARFPS 373 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 NW LS RA S VL + RI G A ++D + NRR++I+V Sbjct: 374 NWHLSQARADSVAAVLAPQ-LGGARIE-TEGRAESEPVASNDTPEGRARNRRVEIIV 428 >gi|163851783|ref|YP_001639826.1| OmpA/MotB domain-containing protein [Methylobacterium extorquens PA1] gi|218530589|ref|YP_002421405.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|240138946|ref|YP_002963421.1| flagellar motor protein MotB [Methylobacterium extorquens AM1] gi|163663388|gb|ABY30755.1| OmpA/MotB domain protein [Methylobacterium extorquens PA1] gi|218522892|gb|ACK83477.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|240008918|gb|ACS40144.1| flagellar motor protein MotB [Methylobacterium extorquens AM1] Length = 337 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 106/297 (35%), Gaps = 28/297 (9%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130 F +T + N + + L + + +T + +R Sbjct: 42 FLSQELTGRDAVLTRLNRQIADLTDLLALERSSRRAQEEAASGLRNTLTATEAERDRLRA 101 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184 + S + Q + +E+G +E +++ ++ L+ + Sbjct: 102 LTDASEAAQGKSADVDAQLAAERGATQRAQNQVELLNEQIRALRRQLAALEDALAASESR 161 Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235 + + R+ +L +++ L+ V + ++ V+ T I+ ++ Sbjct: 162 DRESQARIAELGSRLNVALAQRVQELARYRSDFFGRLRQVIGSRTDVRIVGDRFVLQSEV 221 Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIA-RDNWR 286 +F S+ PE L +I + A V+ + GHTDA P ++ NW Sbjct: 222 LFAAGSAALKPEAGPELDRIAGAILDIAREIPADIPWVLRVDGHTDARPIQSAQFPSNWA 281 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 LS RA + Q L G+ R+ F + + S+ S NRRI++ + +R Sbjct: 282 LSASRAIAVVQYLRSKGLPPQRLLA-GAFGEFQPLDSGTSEEAYSRNRRIEMKLTER 337 >gi|126662906|ref|ZP_01733905.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38] gi|126626285|gb|EAZ96974.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38] Length = 321 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 117/312 (37%), Gaps = 23/312 (7%) Query: 45 MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104 +A ++ + + +E + K ++N ++ +N+++L + Sbjct: 7 LACVVLSLTTSCVSKKIYQDLENKYADLKKE-----HNALSDENTTLKTDKNQLELDKNS 61 Query: 105 HITK-NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 T+ + V + + + S + + ++L + K + L + Sbjct: 62 LQTELDKVKSERDKLAADYAATKKNLDNLKASYAALEKDSNDALEANINKNRQLLAELEA 121 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLA-------KKISSTLSGLVADNIVKGVL 216 ++ E L L K+ + R L+ + KK+ TLS + KG+ Sbjct: 122 KQKALTAEQDRLNKLKKDLEASSTRLAELEKMMADKEAAMKKLKETLSKSLKAFEGKGLT 181 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 + +S+ N +F+ S E ++ +GEVL + E+ + I GHTD Sbjct: 182 VTEKDGKVYVSM---ENKLLFESGSWTVGAEGKKAVKALGEVLGQNPEISVLIEGHTDND 238 Query: 276 PFRN----IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--S 329 +NW LS RA + +L ++ + + +G + +D + Sbjct: 239 KITGTIGGGVENNWDLSTKRATAIVNILGENKAIDKKNLTAAGRGEFAPLMTNDSAEGKA 298 Query: 330 ANRRIDILVEDR 341 NRRI+I++ + Sbjct: 299 KNRRIEIILTPK 310 >gi|261365147|ref|ZP_05978030.1| OmpA family protein [Neisseria mucosa ATCC 25996] gi|288566399|gb|EFC87959.1| OmpA family protein [Neisseria mucosa ATCC 25996] Length = 421 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 15/182 (8%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++ S+ + + ++ K+ ++ K++ ++ L +A + V E + Sbjct: 217 MQWSLGDDFDTASTKVNNLKLPSVTAKQQETQGTIRLRPLLENEIARKL---VSVEDFQD 273 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-A 281 ++I+ +F+ S+ + VL ++ + L I + G+TD P +++ Sbjct: 274 RSTVTIL---GDGLFESGSAQIQDQYYPVLARVSQALDSVEGQIVVTGYTDDKPIQSLNF 330 Query: 282 RDNWRLSLDRAYSAYQVL---MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 NW LS RA + ++L +K+G RI + G +D + NRR++I Sbjct: 331 PSNWHLSQARADAVKEILLNYIKNG--GTRI-RSEGRGSTDPVAPNDTLENRAKNRRVEI 387 Query: 337 LV 338 + Sbjct: 388 TL 389 >gi|218886185|ref|YP_002435506.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757139|gb|ACL08038.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 241 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 11/201 (5%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 K +L + L S+++ N + L + +K +A+K+ Sbjct: 32 PPETKQALAGYFSTERSLFDSSNVSPVANNPFVQGVDKLDTRDFKVSETEKSHYAIAQKL 91 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + G+ + + + + MF S+ +PE VL ++ ++L Sbjct: 92 KQMMMADAIPQNASGISADDVGVLLRV-----NSDVMFKAGSAELVPEGSRVLDEVIKIL 146 Query: 260 AHSTEVISIRGHTDASPFR--NIARDNWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFA 316 + +RGH+D+ + NW LS R A + ++ G+ R+ I+ +A Sbjct: 147 REYNLYLMVRGHSDSGEVAAGSPYPSNWELSGARAAAAVRYIIEHGGIKPTRLRGIA-YA 205 Query: 317 HHRLKIASDP--MNSANRRID 335 R + S NRR++ Sbjct: 206 DTRPMEPNTTPESRSKNRRVE 226 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 GSWK+ YADF+T +MAFFL+MWI+N T +TK+A+ YF+ ++L +S N Sbjct: 3 GGGSWKVAYADFVTAMMAFFLLMWILNMTPPETKQALAGYFST-ERSLFDSSNVSPVANN 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 P + T+ S Q + N +S Sbjct: 62 PFVQGVDKLDTRDFKVSETEKSHYAIAQKLKQMMMADAIPQNASGISAD 110 >gi|298369093|ref|ZP_06980411.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298283096|gb|EFI24583.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 417 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+ + I + ++ + ++I+ +F+ S+ + VL +G+ L Sbjct: 252 RLRPLLENEIARKLVSVKDDPDRSTVTIL---GDGLFESGSTSIQDQYYPVLAAVGQALN 308 Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + G+TD +P +++ NW LS RA + ++L+ + + G Sbjct: 309 SVDGQVVVTGYTDNTPIQSLEYPSNWHLSQGRADAVKEILLSYMRNGANRIRSEGRGSTN 368 Query: 320 LKIASD-PMN-SANRRIDILV 338 +D P N + NRR++I + Sbjct: 369 PVAPNDSPENKAKNRRVEITL 389 >gi|209516113|ref|ZP_03264972.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209503397|gb|EEA03394.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 228 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 L + ++ QD K++S+ L L + + G+ I I Sbjct: 64 QTLETKTVQQSAPAPAGGAQQDARKQLSALLDALREKGL---ITVTDVPHGVEIGI---N 117 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 +F+ + LP++ VL +I +VL ST + + GHTD+ P NW LS Sbjct: 118 AKILFNAGDARLLPDSFEVLNQIAQVLQKDSTGNVLVEGHTDSVPISTAKYASNWELSSA 177 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 RA + + L++ G+ R++ I G A + + Sbjct: 178 RAGAVVRYLVERGIEPHRLAAI-GRADNFPLV 208 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 W I YAD +T +M FL ++++ + Sbjct: 30 WLISYADLITTMMVLFLALYVLQLAKSKQLE 60 >gi|163787137|ref|ZP_02181584.1| outer membrane protein, OmpA family [Flavobacteriales bacterium ALC-1] gi|159877025|gb|EDP71082.1| outer membrane protein, OmpA family [Flavobacteriales bacterium ALC-1] Length = 319 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 17/223 (7%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S E+ S+ +S+K ++L + ++ E+ L L KE KR Sbjct: 90 LKASYKALEENSSASIAANSKKNRELLAQLEAKEQALATESERLNTLKKELESRSKRVAE 149 Query: 192 LQDL-------AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 L+++ + + +S + + KG+ E + +S+ N +F S Sbjct: 150 LENVIAAKDANMRALKDAISKALTNFEGKGLTVEQRDGKVYVSM---ENKLLFQSGSWSV 206 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVL-M 300 E +Q++G VLA + E+ + I GHTD P++ A NW LS RA + +L Sbjct: 207 GTEGRKAVQQLGSVLAENPEISVLIEGHTDNVPYKGNAQLSGNWDLSAKRATAIVNILRE 266 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 S +S + ++ +G + + NRRI++++ + Sbjct: 267 NSAISPENLTA-AGRGEFAPIATNSTAEGKAKNRRIEVVLTPK 308 >gi|302185388|ref|ZP_07262061.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae 642] Length = 296 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 11/177 (6%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 SI E + + LQ +A+ + +++K + Sbjct: 75 SIKPAEPLVKESEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 W LS R+ S ++L GV+ R++ + G+ + + + NRR+ +++ Sbjct: 189 WELSSARSASIVRMLAAMDGVNPARLASV-GYGEFQPIAPNTSTAGRAKNRRVVLVI 244 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 102/307 (33%), Gaps = 43/307 (14%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q Sbjct: 3 RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQAL-------- 52 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 G+F++ + I + ++ + + + Q ++ + + Sbjct: 53 ---VGVFNDTER----TMKPIPIGEQRPVSIKPAEPLVKESEQTDAGIGQASDDPLQTIA 105 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q L + D E I E N + S + + + K ++ +A Sbjct: 106 QDVRDAFGDLIK-----SDQMTVRGNELWIEIELNSSMLFGSGDAMPSDKAFTIIEKVAG 160 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + + + T + F + + + +++ + Sbjct: 161 IVKRFDNPIHVEGFTDDQPISTAQ---------------FPTNWELSSARSASIVRMLAA 205 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFA 316 + + ++ G+ + P RA + VL+ + R +G A Sbjct: 206 MDGVNPARLASVGYGEFQPIAPNTST-----AGRAKNRRVVLVISRNLDVRRSLTSAGSA 260 Query: 317 HHRLKIA 323 + + A Sbjct: 261 NVQPDAA 267 >gi|256425427|ref|YP_003126080.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256040335|gb|ACU63879.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 285 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 96/235 (40%), Gaps = 14/235 (5%) Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 D + + ++R N + ++ E K + + + KDL ++ + K+ Sbjct: 48 DCQRSLRDTASAFERSRN-----VSEERVEGLKQNNSTLLNQLKDLSVISNSQAESIKKS 102 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + R L + L G + + K + + + + I I D+ Sbjct: 103 LDNIGAKDAYIQDLQSAIARKDSLNMALVMNLKGAIGNLDDKDINIKVEKGVVYIDISDK 162 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSL 289 +F+ S P+ VL K+ +VL + + + GHTD++P++ + DNW LS+ Sbjct: 163 M---LFESGSYDVTPKAKEVLGKVAKVLLNQPDIEFMVEGHTDSNPYKKGVLLDNWDLSV 219 Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 RA + +VL + I+ +G + + ++D + NRR I++ + Sbjct: 220 KRATAVTRVLQNDYNIPPAHITA-AGRSEYLPIASNDTPEGRATNRRTRIVILPQ 273 >gi|256823714|ref|YP_003147677.1| type IV / VI secretion system protein, DotU family [Kangiella koreensis DSM 16069] gi|256797253|gb|ACV27909.1| type IV / VI secretion system protein, DotU family [Kangiella koreensis DSM 16069] Length = 439 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + L E + + + + AK + LS + +++ V+ + I+I+ + Sbjct: 263 IASLVPENKVDLASSDSVINYAKNLRQLLSTEIGRGLLQ-VVEDIDHVAIIIT-----SN 316 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY 293 M+ +S+ +I +++KIG++ + I + GH+D NW LSL RA Sbjct: 317 QMYSSASAQLNENSIALIEKIGQIATTTPGHIQVVGHSDDQKIFTAKYHSNWELSLARAN 376 Query: 294 SAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338 S ++L ++ R++ G A R+ +D + NRR++IL+ Sbjct: 377 SVVRILNQNQNLAGRVTAEGRGAAEPRVANDTDTNRALNRRVEILL 422 >gi|209965120|ref|YP_002298035.1| hypothetical protein RC1_1826 [Rhodospirillum centenum SW] gi|209958586|gb|ACI99222.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW] Length = 344 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 98/272 (36%), Gaps = 22/272 (8%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ER + + + + + L G Q + + S Sbjct: 74 ERETSGGLRADVAQLTDRLRSTLARGEQLQADIAALAGERDALAAREAGLKGSVESERAL 133 Query: 151 SEKGKDLCKSTDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ + + + + ++ ++ L + +++ ++ DL +++ L+ V + Sbjct: 134 GDEARAQVELLNQQVAALREQLARVAAALEVSEGKGREQEAQIADLGNRLNVALADKVTE 193 Query: 210 ---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 ++ L E ++ ++ +F S L ++ E L Sbjct: 194 LARYRSEFFGRLREALGERDDVRVVGDRFVFQSEVLFGSGSVELGEAGKERLSRLAETLK 253 Query: 261 H--------STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 V+ + GHTD+ P R+ NW LS RA + + L+ G+ DR++ Sbjct: 254 EIAARVPPEVDWVLRVDGHTDSVPIRSARFPSNWELSTARATAVVKYLIDQGIPADRLAA 313 Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 +GF ++ S + NRRI+I ++ R Sbjct: 314 -AGFGQYQPLDPGTSAEALARNRRIEIKLDAR 344 >gi|262199634|ref|YP_003270843.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262082981|gb|ACY18950.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 291 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 15/209 (7%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++ + R + + K KS +E + L L K K A KR + +DL Sbjct: 76 TEEEVASMEAEKVRVEGELAAVVKDRARLKSSAEELSQALSELGKRKAEAEKRVAQFRDL 135 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + S + + + T +++ + +F + + IV + +I Sbjct: 136 LNRFRSLID-------AGKLKVKITDGRMILEL---PTDVLFASGRADLSEDGIVSITQI 185 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 GEVLA + I GHTD P NW L+ RA + + L ++G+ +S S Sbjct: 186 GEVLAAIPDRRYQIEGHTDNVPISTARYPSNWELAAARALTVLKTLREAGMQGSTLSAAS 245 Query: 314 GFAHHRLKIAS--DPMNSANRRIDILVED 340 F R ++ D ANRRI+I++ Sbjct: 246 -FGEFRPVASNNSDAGRRANRRIEIVIVP 273 >gi|110635517|ref|YP_675725.1| hypothetical protein Meso_3188 [Mesorhizobium sp. BNC1] gi|110286501|gb|ABG64560.1| OmpA/MotB [Chelativorans sp. BNC1] Length = 343 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 108/342 (31%), Gaps = 22/342 (6%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN-------ATDDDTKKAIEQYFNP 71 + + T + + A + +M V + + D+ + N Sbjct: 5 RSRRRERTVDYWPGFVDALATLLLAIMFLLSVFVVAQYFLSREISGRDEALDRLNAQINE 64 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + L D ++ + D ++ + + GS + Sbjct: 65 LTQLLALEKANFQDAEDQIATLRASLADAEAEQSRLQQILSSGAGSEAAANERIGELTGE 124 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + + LE ++ E +K L + Sbjct: 125 LDQERQISQRALSQVELLNQQISALRQQIAALEDALEASERRDRESNTKIADLGRRLNVA 184 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L ++++ S ++ +L + I+ ++ +F ++ P Sbjct: 185 LAQRVQELNRYRSDFFGR--LREILSDREDIRIVGDRFVFQSEVLFASGATEINPNGQEE 242 Query: 252 LQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK 301 ++K+ + I + GHTD P R DNW LS RA + + L++ Sbjct: 243 MRKLAGAILELQREIPPEINWVLRVDGHTDNIPLSGTGRFRDNWELSTARAVAVVKFLIE 302 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 SGV +R+ +GF + + + NRRI++ + +R Sbjct: 303 SGVPAERLVA-AGFGEFQPLDPENTTEARSRNRRIELKLTER 343 >gi|167583745|ref|ZP_02376133.1| hypothetical protein BuboB_00307 [Burkholderia ubonensis Bu] Length = 405 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +I+ L +A + I+ R +F ++ + + VL ++ + Sbjct: 254 RIAKFLEPEIAAGL-----VSVRDDADRSVIV-LRGDGLFQSGATSVIDRYLPVLARVAD 307 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA S +L +R++ G Sbjct: 308 ALNKVPGNVRVSGYTDDTPVHTARFASNWDLSRERAESVRSLLAARLDRPERLAA-QGRG 366 Query: 317 HHRLKIASDP--MNSANRRIDILVE 339 +D + NRR++I + Sbjct: 367 TLDPVAPNDTPANRARNRRVEITLL 391 >gi|126668189|ref|ZP_01739150.1| OmpA/MotB [Marinobacter sp. ELB17] gi|126627338|gb|EAZ97974.1| OmpA/MotB [Marinobacter sp. ELB17] Length = 465 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 106/296 (35%), Gaps = 15/296 (5%) Query: 60 DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 + A+ N A I + +++ L+ ++ + N Sbjct: 157 QRRDALTSDLNAALAKQGDAQNQIDELTTQLTQATGQADTLTQQRDDLTATLTATQSAAN 216 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 ++ + ++ + ++ + L +T+ +S+ ++ L+ Sbjct: 217 AQQTDAQNRIAELEKQLAEANAALADARQEVRQHQSALASATEQRQSVAEQYQQAREQLA 276 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID------QRN 233 ++ + + + L +++ + + + ++ + D Sbjct: 277 LQQARSQSATETINVLEARMAQEKAATDNLQ-SRLQSLSHEKESLVSRLEDGTTVIKLPE 335 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLS 288 + +F+ S+ L + + L + ISI+GH+D+ ++ NW LS Sbjct: 336 SIVFNSGSARIGKAGQHTLTLLADALKSFPDHLISIQGHSDSRSIAPALQSLYPTNWELS 395 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342 RA SA +VL ++G+ R+ + GFA R + NRRI++L+ Q Sbjct: 396 ASRAASAVRVLREAGIDPSRMQAV-GFADARPLVKEIDTVSRRKNRRIEVLLYPSQ 450 >gi|330812625|ref|YP_004357087.1| hypothetical protein PSEBR_a5553 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380733|gb|AEA72083.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 436 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+G +AD I + + S++ R +F S+ + ++ +I + + Sbjct: 294 RLAGFLADEIRANRI--AVEDAVDRSVVTIRGDELFASGSASIKDDFQPLMLRIADAVRK 351 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW LS RA S Q+L +R S G + Sbjct: 352 VKGQVLVTGHSDNRPIATLRFPSNWALSEARAQSVLQILSAKTGQPERFSA-EGRSDTEP 410 Query: 321 KIASDPM--NSANRRIDILVE 339 ++ + NRR++I V Sbjct: 411 LASNATTEGRARNRRVEITVL 431 >gi|209522485|ref|ZP_03271080.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. H160] gi|209497081|gb|EDZ97341.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. H160] Length = 444 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 TLS +A I +G+ T SI+ +F S+ P ++ +I E L Sbjct: 301 TLSTFLAPEIRQGL-VSVHETADR-SIVTITGDNLFASGSATLDPAYDALIGRIAEALKS 358 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I + GHTD + NW LS RA S +L + R S G Sbjct: 359 VPGKIVVTGHTDDQRLVSARFPSNWHLSQARAESVRAMLASLSGAPARFSA-EGRGDAEP 417 Query: 321 KIASDP--MNSANRRIDILVE 339 +++ + NRR++I + Sbjct: 418 LASNETPAGRAKNRRVEITLL 438 >gi|108808116|ref|YP_652032.1| putative OmpA family protein [Yersinia pestis Antiqua] gi|108812385|ref|YP_648152.1| OmpA family protein [Yersinia pestis Nepal516] gi|145599315|ref|YP_001163391.1| OmpA family protein [Yersinia pestis Pestoides F] gi|162419405|ref|YP_001606412.1| SciP protein [Yersinia pestis Angola] gi|165925389|ref|ZP_02221221.1| SciP protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937006|ref|ZP_02225571.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008588|ref|ZP_02229486.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214237|ref|ZP_02240272.1| SciP protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399212|ref|ZP_02304736.1| SciP protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421156|ref|ZP_02312909.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424473|ref|ZP_02316226.1| SciP protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229838286|ref|ZP_04458445.1| putative OmpA family protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895433|ref|ZP_04510605.1| putative OmpA family protein [Yersinia pestis Pestoides A] gi|229898850|ref|ZP_04513995.1| putative OmpA family protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902751|ref|ZP_04517868.1| putative OmpA family protein [Yersinia pestis Nepal516] gi|270490077|ref|ZP_06207151.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis KIM D27] gi|108776033|gb|ABG18552.1| OmpA family protein [Yersinia pestis Nepal516] gi|108780029|gb|ABG14087.1| putative OmpA family protein [Yersinia pestis Antiqua] gi|145211011|gb|ABP40418.1| OmpA family protein [Yersinia pestis Pestoides F] gi|162352220|gb|ABX86168.1| SciP protein [Yersinia pestis Angola] gi|165914869|gb|EDR33481.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922996|gb|EDR40147.1| SciP protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992970|gb|EDR45271.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204593|gb|EDR49073.1| SciP protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166960645|gb|EDR56666.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051716|gb|EDR63124.1| SciP protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056355|gb|EDR66124.1| SciP protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680198|gb|EEO76297.1| putative OmpA family protein [Yersinia pestis Nepal516] gi|229688398|gb|EEO80469.1| putative OmpA family protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694652|gb|EEO84699.1| putative OmpA family protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701588|gb|EEO89615.1| putative OmpA family protein [Yersinia pestis Pestoides A] gi|262366676|gb|ACY63233.1| OmpA family protein [Yersinia pestis D182038] gi|270338581|gb|EFA49358.1| type VI secretion system OmpA/MotB family protein [Yersinia pestis KIM D27] gi|320014519|gb|ADV98090.1| putative OmpA family protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 278 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I K ++ + T + + MF S PE I V++++ + + Sbjct: 140 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 196 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTD+ P + +N LS RA + + + ++G+ D+I + G + Sbjct: 197 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 255 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 256 PVSSNDDATGRSQNRRVEIFV 276 >gi|167840769|ref|ZP_02467453.1| hypothetical protein Bpse38_29109 [Burkholderia thailandensis MSMB43] Length = 405 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 253 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 306 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P + NW LS +RA + ++ DRI+ G Sbjct: 307 ALNQVPGSVRVSGYTDDTPVHSARFASNWDLSRERAEAVRGLIAARLDRPDRIAA-EGRG 365 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 366 TLDPVAPNDSPANRARNRRVEITLM 390 >gi|320158759|ref|YP_004191137.1| outer membrane protein ImpK/VasF, OmpA/MotB domain [Vibrio vulnificus MO6-24/O] gi|319934071|gb|ADV88934.1| outer membrane protein ImpK/VasF OmpA/MotB domain [Vibrio vulnificus MO6-24/O] Length = 442 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 10/148 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A +I +L+ + ++K + + I+ +F+ S+ + V+ K Sbjct: 288 VANQIQRSLATEIEMGLLK---VDALPDRVRITFQSND---LFESGSAELVAHIFPVVSK 341 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L + I + GHTD +P + NW LSL RA + L +G R+ Sbjct: 342 VARALEATNGKILVVGHTDNNPIFTSKFPSNWHLSLARATALTDRLASAGKLSGRVIP-E 400 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVE 339 G R ++++ S NRR++I + Sbjct: 401 GMGEARPLVSNETAEGRSINRRVEIDLL 428 >gi|154252545|ref|YP_001413369.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156495|gb|ABS63712.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1] Length = 338 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 94/250 (37%), Gaps = 21/250 (8%) Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 D +T +K + L ++ ++ SE + ++ ++ Sbjct: 90 DSLAAATAEKDRLASLADDASGTRVAELEGKLAEEQKLSSEALSQVELLNQQISALRRQL 149 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-----I 226 L ++ +++ ++ DL +++++ L+ V + F IL I Sbjct: 150 ATLEAALEAAELKDREQQVQIADLGRRLNAALAQKVQELAKYRSEFFGRLRAILGDRQDI 209 Query: 227 SIIDQ----RNTPMFDKSSSIPLPETIVVLQKIG--------EVLAHSTEVISIRGHTDA 274 I+ ++ F+ S+ P L KI E+ V+ + GHTDA Sbjct: 210 EIVGDRFAMQSEIFFESGSADINPSGKEQLDKIATAVREIAAEIPDDIPWVLRVDGHTDA 269 Query: 275 SPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSAN 331 +P NW LS RA + L++ GV ++R+ +GF + N N Sbjct: 270 NPIATAQFPSNWYLSSARAIAVVNYLVERGVPQNRLVA-AGFGQYHPLADGRGTAENRRN 328 Query: 332 RRIDILVEDR 341 RRI+ + +R Sbjct: 329 RRIEFKLTER 338 >gi|217978313|ref|YP_002362460.1| OmpA/MotB domain protein [Methylocella silvestris BL2] gi|217503689|gb|ACK51098.1| OmpA/MotB domain protein [Methylocella silvestris BL2] Length = 337 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 21/261 (8%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 DE T + +L ++ + ++ + + + + Sbjct: 78 ESDEKATLLASNLDAAQKDKARLQGAIDAKAAGDGGAAAQQQLAAEKDASAAALAQIDIL 137 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NI 211 ++ ++ LS + + + ++ DL +++ L+ V + Sbjct: 138 NQQIAALRRQLAAIEDALSASEKSGAESQAKIADLGSRLNIALAQKVQELARYRSDFFGR 197 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHST 263 ++ +L + ++ ++ +F+ S ++ L K+ L Sbjct: 198 LRQILGDRPGVSVVGDRFIFQSEVLFESSQAVLDTAGRAELDKLASALIELEHEIPPDIP 257 Query: 264 EVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +I + GHTD P ++ NW LS RA + Q L+ GVS R++ +GF + Sbjct: 258 WIIRVDGHTDKKPIQSSQYPSNWSLSAARAIAVVQYLVSKGVSPQRLAA-AGFGEFQPLD 316 Query: 323 A--SDPMNSANRRIDILVEDR 341 D N NRRI++ + ++ Sbjct: 317 PGEGDDANRRNRRIELKITEK 337 >gi|27366879|ref|NP_762406.1| flagellar motor protein [Vibrio vulnificus CMCP6] gi|27358446|gb|AAO07396.1|AE016809_158 Flagellar motor protein [Vibrio vulnificus CMCP6] Length = 442 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 10/179 (5%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 EKS SKE +A +I +L+ + ++K + Sbjct: 257 EKSDQTFSQLMNLVPSKEIENQSADYISSLAVANQIQRSLATEIEMVLLK---VDALPDR 313 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIAR 282 + I+ +F+ S+ + V+ K+ L + I + GHTD +P + Sbjct: 314 VRITFQSND---LFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNNPIFTSKFP 370 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 NW LSL RA + L +G R+ G R ++++ S NRR++I + Sbjct: 371 SNWHLSLARATALTDRLASAGKLSGRVIP-EGMGDARPLVSNETAEGRSINRRVEIDLL 428 >gi|254446248|ref|ZP_05059724.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium DG1235] gi|198260556|gb|EDY84864.1| hypothetical protein VDG1235_4498 [Verrucomicrobiae bacterium DG1235] Length = 260 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 6/200 (3%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-----KRLQDLAKKI 199 SL RD K +T ++ S+ E+ S A + K L ++A++ Sbjct: 37 ESLKRDLAKYFQDPYNTPMDNSMGVIESPTEGQPSSANGQAKGKAEISDFKVLYEMAQEF 96 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ A+ K V + T G+ +++ D+ P F ++S+ P V++ + ++ Sbjct: 97 MRLLNIDSANPDQKPVDLDVTSDGLRVTLYDRDAHPFFVENSADYTPWGSFVIETLAWLV 156 Query: 260 AHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 ++ + G+ W LS DRA S ++L + GV + ++ + Sbjct: 157 QRHNFMVRVDGYVSEGFEGDGWEYTAWELSSDRANSTRRLLERYGVRRGQFKSVTSHGNM 216 Query: 319 RLKIASDPMNSANRRIDILV 338 P AN R+ I + Sbjct: 217 EPLPFMHPTAEANDRVSISL 236 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 ++ G+WK+ YADF+T +MA F+V+W+ + D+ K+ + +YF M S G+ + Sbjct: 5 GTHHGGAWKVAYADFVTAMMALFMVLWL-TSQDESLKRDLAKYFQDPYNTPMDNSMGVIE 63 Query: 86 EQNPPERSSQNKIDLSIDE 104 + SS N E Sbjct: 64 SPTEGQPSSANGQAKGKAE 82 >gi|332716479|ref|YP_004443945.1| Flagellar motor protein [Agrobacterium sp. H13-3] gi|325063164|gb|ADY66854.1| Flagellar motor protein [Agrobacterium sp. H13-3] Length = 343 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 23/323 (7%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 T+LMA ++ + + I + L + + + + S Q+ D Sbjct: 23 LSTLLMAIMFLLTVFVLAQFVLSREISGK-DEVLTRLNSQIAELTELLAMEKGSKQDIED 81 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 T + + + N + + +S + Sbjct: 82 ALASLQSTLAASESERSRLQSLLDAGSGNNASANARIGSLTGELDDQRQANSRASAQIEL 141 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------ADNIV 212 ++ + L + + ++ DL ++++ L+ V +D Sbjct: 142 LNQQIAALRAQIASVEAALQASEAKDTSSQVKIADLGRRLNVALAQRVQELNRYRSDFFG 201 Query: 213 KGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---- 266 + + R I I ++ +F + P+ ++K+ L + I Sbjct: 202 RLREILSDRENIRIVGDRFVFQSEVLFPSGGNDLNPQGQAEMEKLAAALIDLAKEIPTEI 261 Query: 267 ----SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + GHTD R DNW LS RA S + L+ GV +R+ +GF ++ Sbjct: 262 NWVLRVDGHTDNVQLSGSGRFRDNWELSSARATSVVKFLISKGVPANRLVA-AGFGEYQP 320 Query: 321 KIASDPMNSA--NRRIDILVEDR 341 D + NRRI++ + +R Sbjct: 321 IAEGDTPEARQQNRRIELKLTER 343 >gi|89891334|ref|ZP_01202840.1| chemotaxis motB protein, OmpA family [Flavobacteria bacterium BBFL7] gi|89516365|gb|EAS19026.1| chemotaxis motB protein, OmpA family [Flavobacteria bacterium BBFL7] Length = 289 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 16/221 (7%) Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + ++ + E L + +++K++ L + + + L Sbjct: 51 EKAAQAKLSALQSEIQNLRESNASLLNNVGDLATLSKKDAEILETSLERIREKDLQIRSL 110 Query: 193 QDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 D K + +++ + + + + + + ISI D +F S Sbjct: 111 NDALTKKDSVTIALVTSIKSSLGNVNDEDINVNVEKGVVFISIND---KLLFASGSDQIN 167 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVL-MKS 302 VL K+G +L + I GHTD+ P + +DNW LS RA + + L K Sbjct: 168 SNAYTVLGKVGTILKDKANMEVMIEGHTDSQPIASANFKDNWDLSTARAAAITRYLQEKE 227 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + R++ +G +++ ++D + NRR I++ + Sbjct: 228 QIDPARMTA-AGRSYYVPIASNDTAEGRAKNRRTRIIILPK 267 >gi|162453404|ref|YP_001615771.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161163986|emb|CAN95291.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 263 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 12/233 (5%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G + Q+ + Q + N + ++ + L ++ ++L K + + + + L Sbjct: 21 GHSEQEWKSQLDKYNQLQNRSQKREAELEKELADAKQRVEELEKKLADQGADISKMSSTL 80 Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 K R K+L+ + + L + + + G+ + R ++IS+ Sbjct: 81 EDREKALAEYKARAKQLEAIQARFD-LLRKKLEELVKLGLEVQVRRNRMVISL---PGDV 136 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNI-ARDNWRLSLD 290 +FD + +L+KI +V+ + GHTD+ P+++ +DNW LSL Sbjct: 137 LFDSGKDTLSKDGQQILKKISDVIRGDKSLVDRDYQVAGHTDSQPYKSGPFQDNWGLSLM 196 Query: 291 RAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + L+ K G R +GFA +++ NRR D++V Sbjct: 197 RARAVLLFLIGKEGQLPTRHWSAAGFADTDPIASNNTPAGKQKNRRCDLIVLP 249 >gi|158422120|ref|YP_001523412.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] gi|158329009|dbj|BAF86494.1| flagellar motor protein [Azorhizobium caulinodans ORS 571] Length = 339 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 33/270 (12%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 E T S D ++ + Q E + + S + D+ K Sbjct: 71 ERATGQSQDSELAALRASLQATEAERDRLKAAAGPAPTGPDPSREAALAREVDMQKDVAS 130 Query: 164 EK------------SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-- 209 ++ ++ L+ + + + ++ DL K+++ L+ V + Sbjct: 131 RALAQIELLNQQIAALRRQMAALEEALNVSEKRDQESQTKIADLGKRLNVALAQRVQELS 190 Query: 210 ---NIVKGVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + G L + I I+ ++ FD+ S+ P PE + L K+ + Sbjct: 191 RFRSEFFGRLRDILGNRPDIRIVGDRFVFQSEVFFDRGSATPRPEALAELDKLASAILEL 250 Query: 263 TEVI--------SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I I GHTD+ P NW LS RA + Q L+ GV + + Sbjct: 251 ERQIPPDINWALRIDGHTDSRPISTPQFPSNWELSAARAIAVAQYLISKGVQPRHLIA-A 309 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDR 341 GF ++ SD + NRRI++ + +R Sbjct: 310 GFGEYQPIDTGTSDESMARNRRIELKLTER 339 >gi|78063205|ref|YP_373113.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77971090|gb|ABB12469.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 226 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRN 279 G+ I I +F+ + LP++ VL +I + L+ H+T I + GHTD+ P N Sbjct: 107 PHGVEIGI---DAKILFNVGDARLLPDSSPVLNQIAQALSDHATGDILVEGHTDSVPIAN 163 Query: 280 IAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 NW LS RA S + L + GV+ R++ I G A + + Sbjct: 164 AKYESNWELSSARAGSVVRYLTERGVAPHRLAAI-GRADTQPLV 206 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 10/138 (7%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATD----DDTKKAIEQYFNPFGKN 75 + + G W I YAD +T LM FL ++++ D + + ++ Sbjct: 13 RDDDELEGAQSGRWLISYADLITTLMVLFLALYVLQLAKYNALDARYQTLARHAESAASA 72 Query: 76 LMTASKGIFDEQNPP------ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 A+ + E PP S +I L H + +D KI + + Sbjct: 73 SAAATAAVTPEHAPPWLALLDSLKSNGRISLVKAPHGVEIGIDAKILFNVGDARLLPDSS 132 Query: 130 NIFYLSNSQQSEHCKNSL 147 + S+H + Sbjct: 133 PVLNQIAQALSDHATGDI 150 >gi|221209714|ref|ZP_03582695.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221170402|gb|EEE02868.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 428 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 13/162 (8%) Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +K++ D+A+ L L+ D I G + + S++ R MF Sbjct: 266 SADVQKQIADIARMTPPPAPPPQLHLKQLLKDEIAAGTV--SVDEDARRSVVTFRGDAMF 323 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296 + ++ KI +A ++I G+TD P R+ N LS +RA Sbjct: 324 RPGGASVQVSMNPLIAKIAAEIAKVPGKVTIVGYTDNVPIRSGQFASNQALSEERATQVM 383 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 Q+L +GV +R+ + G + + NRR++I Sbjct: 384 QMLQAAGVQANRLEAV-GKGDANPVGDNRTAQGRAQNRRVEI 424 >gi|78062443|ref|YP_372351.1| hypothetical protein Bcep18194_B1593 [Burkholderia sp. 383] gi|77970328|gb|ABB11707.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 440 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 10/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I+ L +A + I+ R +F S+ + + VL ++ + Sbjct: 287 IAKFLEPEIAAGL-----VSVRDDADRSVIV-LRGDGLFKSGSTSVIDRYVPVLARVADA 340 Query: 259 LAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + G+TD +P NW LS +RA + ++ +R++ G Sbjct: 341 LNKVPGNVRVTGYTDDTPVHTARFASNWDLSRERAEAVRGMIAARLDHPERLAA-EGRGT 399 Query: 318 HRLKIASD--PMNSANRRIDILVEDRQG 343 +D + NRR++I + G Sbjct: 400 LDPVAPNDSPANRALNRRVEITLLPAPG 427 >gi|225012825|ref|ZP_03703259.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225003099|gb|EEG41075.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 283 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 16/213 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-- 198 +DL + +++++ L + R +R+QD K Sbjct: 59 ATLTEQNQFLKANNQDLINNIGNLTTLSQKGAENLEMSLESMKEKDIRIQRMQDAVTKKD 118 Query: 199 -----ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + ++L G++ + + + + +SI D +F S VL Sbjct: 119 SVTLALVTSLKGVLGNMSDDDIEINVEKGVVYVSISD---KLLFRSGSYTVTSRAKEVLG 175 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 K+ V+ + E + GHTD P ++ DNW LS+ RA + ++L K GV+ R++ Sbjct: 176 KVATVVNNKPELEFMVEGHTDNVPIKSDGIVDNWDLSVKRATAVVRILEKDFGVAPARMT 235 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +G + + +D + NRR I+V + Sbjct: 236 A-AGRSFYIPVADNDTAANRAKNRRTRIVVLPK 267 >gi|83718191|ref|YP_438455.1| hypothetical protein BTH_II0253 [Burkholderia thailandensis E264] gi|167614920|ref|ZP_02383555.1| hypothetical protein BthaB_01465 [Burkholderia thailandensis Bt4] gi|257141504|ref|ZP_05589766.1| hypothetical protein BthaA_20174 [Burkholderia thailandensis E264] gi|83652016|gb|ABC36080.1| ompA family protein [Burkholderia thailandensis E264] Length = 437 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 L I+ R +F S+ + + VL +I + L + + G+TD + Sbjct: 298 LVSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRIADALNQVPGSVRVSGYTDDT 356 Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332 P NW LS +RA + ++ DRI+ G +D + NR Sbjct: 357 PVHTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRGTLDPVAPNDSPANRARNR 415 Query: 333 RIDILVE 339 R++I + Sbjct: 416 RVEITLM 422 >gi|291519587|emb|CBK74808.1| Flagellar motor protein [Butyrivibrio fibrisolvens 16/4] Length = 313 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 128/329 (38%), Gaps = 35/329 (10%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK ++ P +W ++D M +L+ FF++++ +++TD + + + Sbjct: 1 MAKKQKQEEAPAGSPAWMATFSDLMNLLLCFFVLLFSMSSTDTEKFQEVIASIQSSFSIF 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + I + Q SQ L + + K+ D +K+ +N + Sbjct: 61 SSGGTSIGEGQMISSGISQ----LEMFDDYFKSVHD-GDDQKYEKEGATDTQNEGEQSED 115 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q+E +N SE G+D+ + E + +++A Sbjct: 116 GNQTEEGQNPSDVSSESGEDISVAEAKEALEEAGASES------------------ENIA 157 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++I L+ + V + ++I+I +F+ +I + + ++ + Sbjct: 158 EEIEEKLALY---GLQDQVEVDFNANYVMITI---NGALLFNSGKAILTEDALEIVDNLS 211 Query: 257 EVLAH-STEVISIRGHTDASPFRNIARDNWR-LSLDRAYSAY-QVLMKSGVSEDRISKIS 313 +LA + +I I GHTD P + +N LS+ RA ++ K+ ++ I + Sbjct: 212 NILASYNQNIIEIEGHTDNVPMSSGTYENNDVLSMYRALYVADRIREKTNLNPAYIKS-A 270 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVED 340 G + + + NRR++I + + Sbjct: 271 GRGEYVPIADNSTAEGRARNRRVEIKIFN 299 >gi|46202032|ref|ZP_00053894.2| COG1360: Flagellar motor protein [Magnetospirillum magnetotacticum MS-1] Length = 274 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 21/221 (9%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++ E L ++ +E L + ++K ++ DL Sbjct: 50 KDEKEAELAAEKKISDEGRAQLALLNQQIAAMREELARVTAALDASEARDKEQKAQIADL 109 Query: 196 AKKISSTLSGLVADNIV-------KGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLP 246 K+++ L+G V + + GI I ++ +F S+ P Sbjct: 110 GKRLNVALAGKVEELQKYRSEFFGRLRKVLGDHPGIRIEGDRFIFQSELLFATGSADLGP 169 Query: 247 ETIVVLQKIGEVLAH--------STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQ 297 E + + ++ L V+ I GHTD P + NW LS RA + + Sbjct: 170 EGVEQVGRLAATLKDIAKTMPKGVNWVLRIDGHTDRRPMVSGRYPSNWELSTARAITVLR 229 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L +GV +DR++ +GF + +D + NRRI+I Sbjct: 230 TLAANGVPKDRLAA-AGFGEFQPVDPADNEAAYAKNRRIEI 269 >gi|126665323|ref|ZP_01736305.1| hypothetical protein MELB17_22060 [Marinobacter sp. ELB17] gi|126629951|gb|EBA00567.1| hypothetical protein MELB17_22060 [Marinobacter sp. ELB17] Length = 348 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 117/332 (35%), Gaps = 28/332 (8%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL---MTASKGIFDEQNPPERS 93 Y D ++ L+ + M ++ N L ++ + + + Sbjct: 18 YVDALSALLMLVIFMLLVYVVSQLFLSQTLSDRNSELARLNLRLSELSQLLGLEQGTTAA 77 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE- 152 + ++ + + + + + + + Q + + ++ L E Sbjct: 78 LEQQMLIVQNSFSDSLAENENLQQQLEASRDQLMRQTADAEARAENLADMNQELGNKDEL 137 Query: 153 ---KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + + + ++ ++ + L +K + + ++ L+ +++++++ L+ + Sbjct: 138 SNSQQTMIMRLSNQIAALQNQLRQITAALRLQKEMTVDQEDELKSVSRRLNTMLAERINQ 197 Query: 210 NIVKGVLFETTRTGIL-----ISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVL- 259 F + IL I I+ R + +F S++ E L K+ VL Sbjct: 198 LEQYQSEFFSRLRNILAANENIRIVGDRFLLPSELLFASGSALLGAEGKRELDKLAGVLL 257 Query: 260 -------AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 A ++ I GHTD P NW LS RA + + L V ++R+ Sbjct: 258 DVVETIPADLEWILRIDGHTDRIPINTPQFPSNWELSTARAVAVVRYLADQSVPQNRMVA 317 Query: 312 ISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 +GF + NRRI+I + DR Sbjct: 318 -AGFGEFFPVADGTTPEALQENRRIEIKLTDR 348 >gi|325287672|ref|YP_004263462.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323126|gb|ADY30591.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 285 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 19/227 (8%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 T + + N F +N+Q +LT S KG + +LEKS+ + L Sbjct: 56 TADARLRTLEDQNDFLKANNQVLVDNMGNLTDLSAKGAE-----NLEKSLESLKEKDLTI 110 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + L L + + L L ++ + + + +SI D +F Sbjct: 111 RKLNDAITRRDSVNL-SLVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLF 162 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 S VL K+ +V+ + + + GHTDA P+R + DNW LS+ RA + Sbjct: 163 SSGSYNVATRAKEVLGKVAQVVNNKPDFEFMVEGHTDAVPYRKGVLLDNWDLSVKRATAV 222 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++L + GV R++ +G + + ++D + NRR I+V + Sbjct: 223 VRILQNEYGVDPKRMTA-AGRSQYIPVSSTD--KARNRRTRIVVLPK 266 >gi|153807056|ref|ZP_01959724.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185] gi|149130176|gb|EDM21386.1| hypothetical protein BACCAC_01333 [Bacteroides caccae ATCC 43185] Length = 278 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 19/223 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + +Q S KN + ++ G + + + E+ L+++K +R++ + Sbjct: 47 NTGNQMSVQIKNLMRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLNQKKNELNERERTIN 106 Query: 194 DLAKKISST------LSGLVADNIV----KGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +L + I++ L V D ++ + + +++ D +F S+ Sbjct: 107 ELQQMINAQNEKVRKLLSSVKDALLGFSSDELTVREKDGKVYVAMSD---KLLFQSGSAR 163 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K Sbjct: 164 LDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIK 223 Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + V+ +I + SG + ++ S NRR +I++ + Sbjct: 224 NYNVNPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265 >gi|83592409|ref|YP_426161.1| hypothetical protein Rru_A1073 [Rhodospirillum rubrum ATCC 11170] gi|83575323|gb|ABC21874.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 375 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 101/295 (34%), Gaps = 16/295 (5%) Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 + + + + + + +S+ + L+ + ++ LK + Sbjct: 82 LSQLSGQLRDANARAESLAAQVREVDDTKFENSRLRDQLAGVAKLEQDVAALKALRAELE 141 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK--GKDLCKSTDLEKSINKEENYFLPPLS 179 + RL + +E + R L + +I + + + Sbjct: 142 AEVARLGGQLGEKEGQIAAERTLSEEARAHAALLNAQLEQLQAQLGAIQQALDASEARSA 201 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMF 237 ++K++ RL + L ++ + R + I ++ +F Sbjct: 202 EQKVVIADLGTRLNAALAEKVQELQRYRSEFFGRLREVLGAREDVRIVGDRFVFQSEVLF 261 Query: 238 DKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIAR-DNWRLS 288 SS P L + L ++ + GHTD P A NW+LS Sbjct: 262 PSGSSQLQPAGQDTLASLATTLMAIAARIPGDVDWILRVDGHTDRRPINTAAFQSNWQLS 321 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 RA S L++ GV +R++ +GF ++ SD + NRRI++ ++ R Sbjct: 322 AARAISVVNFLIERGVPPERLAA-AGFGEYQPIDPGQSDEALARNRRIELKLDQR 375 >gi|261417399|ref|YP_003251082.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373855|gb|ACX76600.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327366|gb|ADL26567.1| putative chemotaxis MotB protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 216 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 13/183 (7%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 ++ + L++ + + +++++ +A + ++ LS + +I G++ G Sbjct: 32 AMATLKEQKAEDLTRTEEEVLSCQEQMRKIAAERNALLSKSLQTSIEAGLI--ALEDG-K 88 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIA- 281 I I + + +F + + E V++ I + L + T+VI + G TD PF Sbjct: 89 IQI---QASFLFPINGANLTKEGEGVIRGISKGLLEALDSTDVIMVSGFTDDIPFSGSTS 145 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 NW LS +RA + ++L+K G DR+ +GF HR K +D NRR++I V Sbjct: 146 YTNWNLSTERAVNVVKMLVKMGFPPDRLFA-AGFGEHRPKYPNDSEEHRRLNRRVEIGVT 204 Query: 340 DRQ 342 Q Sbjct: 205 PLQ 207 >gi|260061425|ref|YP_003194505.1| Thrombospondin type 3 repeat:OmpA/MotB [Robiginitalea biformata HTCC2501] gi|88785557|gb|EAR16726.1| Thrombospondin type 3 repeat:OmpA/MotB [Robiginitalea biformata HTCC2501] Length = 446 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 94/270 (34%), Gaps = 28/270 (10%) Query: 78 TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131 T GI+D+ + PE + + D K++ + GS + + Sbjct: 189 TDGDGIYDKDDACPEVAGLEAFNGCPDSDGDGIEDAKDACPNEAGSMEMNGCPDADGDGV 248 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189 ++ +E +L+ + D D E EN P + + + Sbjct: 249 ADKDDACPNEAGLPALSGCPDADGDGVADKDDECPSEAGPAENNGCPWPDTDGDGVLDKD 308 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 D A G VA+N E T + + + T +FD + PE+ Sbjct: 309 DECPDTA--------GTVANNGCP----EVTEE-VQAQLNEYARTILFDTGKASLKPEST 355 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 V I +L ++ GHTD+ N +LS +RA S L+ G+ R Sbjct: 356 RVFVDIIRILDQYPNSRFTVEGHTDSV---GSNSLNQKLSEERANSVRDFLINEGIDASR 412 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + + G+ R ++ NRR++I Sbjct: 413 LEAV-GYGEERPIATNNTRAGRTQNRRVEI 441 >gi|149922653|ref|ZP_01911080.1| flagellar motor protein [Plesiocystis pacifica SIR-1] gi|149816450|gb|EDM75949.1| flagellar motor protein [Plesiocystis pacifica SIR-1] Length = 279 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 86/215 (40%), Gaps = 13/215 (6%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE-NYFLPPLSKEKILAMKRKKRLQDLA 196 Q++E L + +D ++ ++ + E L S + ++ L +L Sbjct: 46 QEAETAAQLLGANIADLEDQLRTAEVRAQEAETELAGVLKDKSNLSASVEEMQQALAELQ 105 Query: 197 K-KISSTLSGLVADNIVKGVLFETTRTGILISIID------QRNTPMFDKSSSIPLPETI 249 + + ++ + + +++ + I+D R +FD + E Sbjct: 106 RLRAAAEVRAGMYRSVLNKFKTLIDNGTLKAKIVDGRMVLELRTDILFDSGKAKLSDEGA 165 Query: 250 VVLQKIGEVLAHS-TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSED 307 + ++G++LA + GHTD P + NW L+ RA + ++ +G+ Sbjct: 166 ATVGEVGKLLAELSDRRFQVEGHTDNVPIKTKAFPSNWELASARAITVVNEMIAAGMPAT 225 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 IS + +A R A+D + NRRI+I++ Sbjct: 226 NISAAA-YADTRPAASNATDEGRAQNRRIEIVLIP 259 >gi|15606305|ref|NP_213684.1| flagellar motor protein MotB [Aquifex aeolicus VF5] gi|2983507|gb|AAC07084.1| flagellar motor protein MotB [Aquifex aeolicus VF5] Length = 235 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 17/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFE--TTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K L+ +A++I + +S +G+ + T + I + + F + E Sbjct: 88 KELKKVAQEIKAEMS-------KRGIWSDYALTGECLRIRVNTDK---FFPPGEDTLMKE 137 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVS 305 ++ + L + I GHTD P NW LS+ RA S +V K G Sbjct: 138 AKGLILGLCYKLKPYALPVDIEGHTDNRPISTPRFPSNWELSMARAISVIEVFEKECGYP 197 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 D++S + G+A + ++D NRR++ V+ Sbjct: 198 SDKLSAL-GYADTKPIASNDTPQGRQKNRRVEFCVK 232 Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKNLMT 78 K + +W + D M++L+ FF++++ ++ + + ++ + FG + Sbjct: 4 KKKEECPKP--PAWLTSFGDLMSLLLTFFILLYSMSIISLEKFYQVLKGIVSAFGAQSVV 61 Query: 79 ASKGIFDEQNPPERSSQN 96 +G E E +N Sbjct: 62 FEEGTMPEGRRIEIPMEN 79 >gi|239813231|ref|YP_002942141.1| hypothetical protein Vapar_0212 [Variovorax paradoxus S110] gi|239799808|gb|ACS16875.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus S110] Length = 460 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 92/295 (31%), Gaps = 21/295 (7%) Query: 48 FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT 107 F + + + + + D + + ++ I + Sbjct: 167 FFQLLSRLVQNPQQHLQLIELIYFCLAMGFEGRFRVIDNGRTQLETLKQRLLQIIRQTRG 226 Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 + +V L + +R N + + + + + + + Sbjct: 227 EIAVPLSPHWQDASAPVRRTRNWVPLWAVGAVAAVLLVLVFGVL----TFSLAGRSDGAF 282 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 LP + +A + RLQ L + D ++ S Sbjct: 283 AAVNAVRLPQTQRAVAVAPAPQPRLQRF-------LEPEIRDGLL-----TVRDEADR-S 329 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWR 286 ++ R +F S L VL ++ + L + + G +D P R++ NW+ Sbjct: 330 VVVLRGDGLFASGSDRVLDRYAPVLARVADALNSVEGNVLVSGFSDDQPIRSVRFPSNWQ 389 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 LS RA + +++ +R+ + G + +D + NRR+++ + Sbjct: 390 LSQARADAVKKMIATRVTRPERL-RAEGRGDADPLVPNDSPANRARNRRVEVTLL 443 >gi|53804092|ref|YP_114257.1| OmpA domain-containing protein [Methylococcus capsulatus str. Bath] gi|53757853|gb|AAU92144.1| OmpA domain protein [Methylococcus capsulatus str. Bath] Length = 179 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 14/148 (9%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++++ L V V + R + +++ D+ +F + E + KI Sbjct: 31 ERQLNEQLRTEVE---ADEVKIQQLRDRLRVTMEDE---LLFPEGGYQISKEGKASIDKI 84 Query: 256 GEVLAHSTE-VISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L +T I + GHTD P + NW LS RA + L G+ R++ Sbjct: 85 IPTLQSATNHRIEVEGHTDNVPIGKHLAHRFSSNWELSAGRACEVVKYLQSKGIDPARMT 144 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDI 336 +G ++ ++ + NRRIDI Sbjct: 145 A-AGHGEYQPVASNATAEGKAQNRRIDI 171 >gi|167576750|ref|ZP_02369624.1| hypothetical protein BthaT_01360 [Burkholderia thailandensis TXDOH] Length = 437 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 L I+ R +F S+ + + VL +I + L + + G+TD + Sbjct: 298 LVSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRIADALNRVPGSVRVSGYTDDT 356 Query: 276 PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332 P NW LS +RA + ++ DRI+ G +D + NR Sbjct: 357 PVHTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRGTLDPVAPNDSPANRARNR 415 Query: 333 RIDILVE 339 R++I + Sbjct: 416 RVEITLM 422 >gi|88811406|ref|ZP_01126661.1| OmpA/MotB [Nitrococcus mobilis Nb-231] gi|88791295|gb|EAR22407.1| OmpA/MotB [Nitrococcus mobilis Nb-231] Length = 439 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 90/251 (35%), Gaps = 21/251 (8%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 + + Q++ + ++ E + + L +++ ++ Sbjct: 190 AQERTQLAQKTLQHRDIRIQDLVAQIEERQEALAHQHRLSAAADAKLGALRRQLQALQEQ 249 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTR 221 + L K + +K +L+ L ++++ L V + ++ VL + Sbjct: 250 ISALAAALHSSKQTVVSQKVQLRRLGEQLNVALVKKVKELSYYRSEFFGRLRQVLGDVPE 309 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTD 273 ++ ++ F S+ L ++ VL + I + GHTD Sbjct: 310 IRVVGDRFMFQSELFFPSGSAQIAAPGKDKLDRLATVLEEVSRRIPGDVDWVLQVDGHTD 369 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SA 330 P NW LS RA S L+ GV +R++ +G+ + + D P + Sbjct: 370 RRPIHTPRFPSNWELSTARALSIVHYLVTRGVPPNRLAA-AGYGQYDPIDSRDSPQALAR 428 Query: 331 NRRIDILVEDR 341 NRRI++ + R Sbjct: 429 NRRIELRLTSR 439 >gi|51596980|ref|YP_071171.1| OmpA/MotB family protein [Yersinia pseudotuberculosis IP 32953] gi|170023725|ref|YP_001720230.1| type VI secretion system OmpA/MotB family protein [Yersinia pseudotuberculosis YPIII] gi|186896063|ref|YP_001873175.1| type VI secretion system OmpA/MotB family protein [Yersinia pseudotuberculosis PB1/+] gi|51590262|emb|CAH21899.1| possible OmpA/MotB family protein [Yersinia pseudotuberculosis IP 32953] gi|169750259|gb|ACA67777.1| type VI secretion system OmpA/MotB family protein [Yersinia pseudotuberculosis YPIII] gi|186699089|gb|ACC89718.1| type VI secretion system OmpA/MotB family protein [Yersinia pseudotuberculosis PB1/+] Length = 458 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I K ++ + T + + MF S PE I V++++ + + Sbjct: 320 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 376 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTD+ P + +N LS RA + + + ++G+ D+I + G + Sbjct: 377 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 435 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 436 PVSSNDDATGRSQNRRVEIFV 456 >gi|153949967|ref|YP_001400351.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152961462|gb|ABS48923.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758] Length = 458 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I K ++ + T + + MF S PE I V++++ + + Sbjct: 320 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 376 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTD+ P + +N LS RA + + + ++G+ D+I + G + Sbjct: 377 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 435 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 436 PVSSNDDATGRSQNRRVEIFV 456 >gi|328542518|ref|YP_004302627.1| OmpA family protein [polymorphum gilvum SL003B-26A1] gi|326412264|gb|ADZ69327.1| OmpA family protein [Polymorphum gilvum SL003B-26A1] Length = 343 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 26/344 (7%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + + A + V++ + + + N + Sbjct: 5 RVRRRPQGTDYWPGFVDAMATLLLVIIFLLSIFMLAQFFLSQQLSGRDTVLNRLNAQISE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E+ L + D +G + + Sbjct: 65 LTELLALERASSRELEDTITTLQASLGEATSERDRLVGLLDDRSGAAAAAGGRAAALEGM 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E + S ++ + L + + +KE+ + + ++ L ++ Sbjct: 125 LDEEKQISQRALAQVELLNQQIAALRRQLAAANAALEASEAKEQ----ESQAKIASLGRR 180 Query: 199 ISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +++ L V + ++ +L + + ++ ++ +F S P Sbjct: 181 LNAALVQRVQELSRYRSDFFGRLREILSQRSDIRVVGDRFVFQSEVLFPSGSDEINPAGT 240 Query: 250 VVLQKIGEVL----AHSTEVIS----IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 V L K+ E + A E I+ + GHTD+ P R +NW LS RA S + L Sbjct: 241 VELGKLAEAILELEAQIPEEINWVLRVDGHTDSRPLSGTGRLRNNWELSSARAISVVRYL 300 Query: 300 MKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341 + GV R+ +GF + D P + NRRI++ + +R Sbjct: 301 IDRGVDPKRLVA-AGFGEFQPLEDGDSPEALARNRRIELKLTER 343 >gi|77918775|ref|YP_356590.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380] gi|77544858|gb|ABA88420.1| MotB-like flagellar protein [Pelobacter carbinolicus DSM 2380] Length = 247 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 67/151 (44%), Gaps = 6/151 (3%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 D ++ + + ++A + + G +I + ++ +FD S+ P + +L Sbjct: 80 DDYVSRLYNRVQSMLARLRIDRDIDLVKDRGAVILRV--KDAILFDAGSTELKPTALPIL 137 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISK 311 +++ ++ ++ I GHTD N A NW +S+ RA + + + DR+S Sbjct: 138 REVAGLVKPLPLLLRIEGHTDNQKPANPAITNWDISVQRAVAVLKFFAGEDLLPLDRLSA 197 Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVED 340 + G+ R + NRR++ ++E+ Sbjct: 198 V-GYGDQRPVAPGLGPEQQALNRRVEFVLEN 227 >gi|114571128|ref|YP_757808.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114341590|gb|ABI66870.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 329 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 111/334 (33%), Gaps = 21/334 (6%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + A +N W F+ L LV+ + + + A+ + + L Sbjct: 5 RFARFQEADNGDHWPG----FVDALATLLLVIVFLLSIFVAGQFALSRALTGRDEQLAAL 60 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + + + +L + + ++ + + + + + Sbjct: 61 NAQLAQLADELALTQAENTEL----ELRVSGLETERDALSDALAMAGTQTAALQAELDVE 116 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E + S + D ++N + + + + +RL + Sbjct: 117 RELSEESQRALMMLNLQIQALRDQIATLNAALDAAELRAQEAEAQVINLGERLNAALAER 176 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ L+ +D + RTG+ I +F S+ E L+ I + Sbjct: 177 AAELAVYRSDFFGRLRAILGNRTGVRIVGDRFVFETDVLFPSGSAALSNEGRESLRPIAD 236 Query: 258 VL--------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + VI I GHTD P R NW LS RA S + GV +R+ Sbjct: 237 AIIQLTDEIPSDLEWVIRIDGHTDPVPIRTTYPSNWHLSAARAISVVNWMEDLGVPSNRL 296 Query: 310 SKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 +GF H + S N+ NRRI++ + R Sbjct: 297 VA-AGFGEHYPMVEGRSAEANARNRRIELKLTAR 329 >gi|149197358|ref|ZP_01874409.1| chemotaxis MotB protein, putative [Lentisphaera araneosa HTCC2155] gi|149139376|gb|EDM27778.1| chemotaxis MotB protein, putative [Lentisphaera araneosa HTCC2155] Length = 265 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 19/228 (8%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N N Q E + L +D + EK + + K++ L Sbjct: 25 ENDQLKQNKAQLESERTELLEQKSGLED--HLSTKEKEQIELSQALDQEIKKQEALIEAH 82 Query: 189 KKRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGI-------LISIIDQRNTPMFDK 239 ++ L + + + + + +V+ + E T I IS+ N +F Sbjct: 83 QQTLDEFKRSVEEEKEEMSTLHSKLVEELQNEITSREIKLKELNGRISLS-MENKILFPS 141 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN--IARDNWRLSLDRAYSAY 296 ++ VL KI + L+ +T+ I + GHTD P + ++NW LS RA S Sbjct: 142 GTANLGDRGTEVLNKISDALSETTDHIIRVEGHTDNVPLSGKGLYKNNWELSAARALSVV 201 Query: 297 -QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++L+ ++ I ++ + + NRRI+I + + Sbjct: 202 KELLITQQLNSKDIEAVA-MGEFHPVADNTTKDGRAQNRRIEIYLSPK 248 >gi|323258027|gb|EGA41706.1| hypothetical protein SEEM8283_04036 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 418 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 280 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 336 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 337 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 395 Query: 320 LKIASD--PMNSANRRIDILVED 340 +D + NRR++ILV + Sbjct: 396 PVADNDSKAGRAKNRRVEILVVE 418 >gi|322614563|gb|EFY11492.1| hypothetical protein SEEM315_18040 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620081|gb|EFY16953.1| hypothetical protein SEEM971_15751 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623376|gb|EFY20215.1| hypothetical protein SEEM973_06161 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629326|gb|EFY26105.1| hypothetical protein SEEM974_10273 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632046|gb|EFY28800.1| hypothetical protein SEEM201_09439 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637216|gb|EFY33918.1| hypothetical protein SEEM202_19199 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639968|gb|EFY36639.1| hypothetical protein SEEM954_15657 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645904|gb|EFY42424.1| hypothetical protein SEEM054_14670 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652397|gb|EFY48751.1| hypothetical protein SEEM675_07291 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652601|gb|EFY48951.1| hypothetical protein SEEM965_20397 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660411|gb|EFY56647.1| hypothetical protein SEEM19N_20108 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664564|gb|EFY60757.1| hypothetical protein SEEM801_06607 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669383|gb|EFY65533.1| hypothetical protein SEEM507_01240 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670929|gb|EFY67062.1| hypothetical protein SEEM877_06997 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678832|gb|EFY74887.1| hypothetical protein SEEM867_12360 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681861|gb|EFY77886.1| hypothetical protein SEEM180_16428 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687987|gb|EFY83953.1| hypothetical protein SEEM600_10746 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194341|gb|EFZ79536.1| hypothetical protein SEEM581_21554 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197757|gb|EFZ82889.1| hypothetical protein SEEM501_21645 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203447|gb|EFZ88472.1| hypothetical protein SEEM460_07455 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206808|gb|EFZ91761.1| hypothetical protein SEEM020_02639 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213373|gb|EFZ98174.1| hypothetical protein SEEM6152_07603 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214666|gb|EFZ99417.1| hypothetical protein SEEM0077_18540 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221803|gb|EGA06208.1| hypothetical protein SEEM0047_03122 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323230011|gb|EGA14131.1| hypothetical protein SEEM0052_01387 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233750|gb|EGA17839.1| hypothetical protein SEEM3312_07048 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238556|gb|EGA22614.1| hypothetical protein SEEM5258_09862 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244244|gb|EGA28253.1| hypothetical protein SEEM1156_09790 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246405|gb|EGA30388.1| hypothetical protein SEEM9199_12008 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252212|gb|EGA36065.1| hypothetical protein SEEM8282_14849 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259875|gb|EGA43506.1| hypothetical protein SEEM8284_21890 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265110|gb|EGA48609.1| hypothetical protein SEEM8285_20494 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272673|gb|EGA56080.1| hypothetical protein SEEM8287_15269 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 434 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIASD--PMNSANRRIDILVED 340 +D + NRR++ILV + Sbjct: 412 PVADNDSKAGRAKNRRVEILVVE 434 >gi|319793582|ref|YP_004155222.1| type IV / vi secretion system protein, dotu family [Variovorax paradoxus EPS] gi|315596045|gb|ADU37111.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus EPS] Length = 456 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 12/155 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPE 247 L + + + + + + E R G+L S++ R +F S L Sbjct: 290 LPQTARAVVMPAPQPRLQRFLEPEI-REGLLTVRDEADRSVVVLRGDGLFASGSDRVLDR 348 Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSE 306 + VL ++ + L + + G +D P R++ NW+LS RA S ++L Sbjct: 349 YVPVLSRVADALNSVEGNVLVSGFSDDQPIRSVRFPSNWQLSQARADSVKKMLAVRITRP 408 Query: 307 DRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 +R+ + G +D + NRR+++ + Sbjct: 409 ERL-RAEGRGDADPLAPNDSPANRARNRRVEVTLL 442 >gi|163796351|ref|ZP_02190312.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159178493|gb|EDP63035.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 561 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 100/296 (33%), Gaps = 14/296 (4%) Query: 55 NATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLK 114 N + + ++ + ++++ ++ + + + ++ ++ + Sbjct: 271 NEATRARLAELAEALKKADSRVVRLETDLSEQRDVTKKLEARLAEQTERTRLAQSELEQR 330 Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 + Q +E + +++ + +E ++ E Sbjct: 331 DIRLEELFSEQERTQQKLTEEQKISAESSRQVELLNAQIAALRQQLARIEAALEATETQN 390 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + L + L ++++ S ++ VL + I+ ++ Sbjct: 391 RDQKVQILDLGRRLNAALATKVQELARFRSEFFGR--LREVLSDRDDVRIVGDRFVFQSE 448 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIA-RDNW 285 +F S+ V L + L I + GHTD P N R NW Sbjct: 449 VLFGSGSAQIGEPGKVKLGQFAATLREIAPRIPKNIGWILQVEGHTDTVPIHNEQFRSNW 508 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 LS RA S + L+ G+ +R+S +G+ ++ +D NRRI++ + R Sbjct: 509 ELSAARAISVVKYLVDQGIPAERLSA-TGYGEYQPIDPAD--LERNRRIEMKLTQR 561 >gi|307721192|ref|YP_003892332.1| OmpA/MotB domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979285|gb|ADN09320.1| OmpA/MotB domain protein [Sulfurimonas autotrophica DSM 16294] Length = 259 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 11/203 (5%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + SE L + + + + E L I + + ++ + Sbjct: 36 SMSSMDAKKISEAIGSLSGAMSVLEGGTQTEISKKRMLEATPIDIQDETSEIVNRVQQAA 95 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVL 259 + ++ + + + G +I + T +F+ S+ + ++ L++I ++ Sbjct: 96 GDANEMMEKTQSPAITIKEAQDGFVIKL---PATLLFNPGSATIENQDALLFLKRITLII 152 Query: 260 AHSTEV--ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + ++GHTD + P N DNW LS RA + L+ GV R+S +GF Sbjct: 153 QELPNDMLVDVQGHTDNTGPGANSPYKDNWELSTARALAVLHELILDGVDPARMSA-TGF 211 Query: 316 AHHRLK--IASDPMNSANRRIDI 336 A ++ A+ NRR+++ Sbjct: 212 AQYQPIATNATATGREKNRRVEL 234 >gi|118588357|ref|ZP_01545766.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614] gi|118439063|gb|EAV45695.1| hypothetical protein SIAM614_23787 [Stappia aggregata IAM 12614] Length = 321 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 22/225 (9%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q + E + ++ ++ L + + ++ L K Sbjct: 98 QLENLLDDERQISQEALAQVELLNQQIAALRRQIAAANAALEASEAKEADSQAKIASLGK 157 Query: 198 KISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++++ L V + ++ +L + + ++ ++ +FD PE Sbjct: 158 RLNAALVQRVQELSRYRSDFFGRLREILSQRSDISVVGDRFVFQSEVLFDSGQEDINPEG 217 Query: 249 IVVLQKIGEVL----AHSTEVIS----IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQV 298 L K+ + + A + I+ + GHTDA P R +NW LS RA S + Sbjct: 218 RQELDKLADAIQELSAQIPDEINWVLRVDGHTDARPLSGTGRLRNNWELSAARAISVVRY 277 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 L++ GV R+ +GF + D + NRRI++ + +R Sbjct: 278 LIERGVDPKRLVA-AGFGEFQPLEEGDTQEALAKNRRIELKLTER 321 >gi|269976278|ref|ZP_06183274.1| flagellar motor protein MotD [Mobiluncus mulieris 28-1] gi|269935607|gb|EEZ92145.1| flagellar motor protein MotD [Mobiluncus mulieris 28-1] Length = 325 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 7/205 (3%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 QS + L S G ++ + + E+I AM L + ++ Sbjct: 59 QSLQVVSPLHTTSGLGLLSGSTSAVNLGSMMGNDTTTAAGQPERIQAMAEASHLNQIKQQ 118 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + L+ ++ T G+++ ++ F + P VL + V Sbjct: 119 VEQALAAAGQTGALQ---MRITEKGLVLGMVASDTY--FKPGDAEVQPTAQAVLAALAPV 173 Query: 259 LAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 LA + E ++I G+ D +P + N+ L+ RA L GV ++ IS A Sbjct: 174 LAGTPEDVAIEGYADPNPQYSAKYPSNYHLAAGRAIEVLIHLRNGGVPGSKLRTISYGAD 233 Query: 318 HRLKIASDPMN-SANRRIDILVEDR 341 H+ ++ + S NRR+DI++ R Sbjct: 234 HQTQVEAGQDAWSLNRRVDIVIMSR 258 >gi|170693360|ref|ZP_02884520.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170141890|gb|EDT10058.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 230 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ S L+ L + + + T G+ I+I +F+ + LPE+ VL +I Sbjct: 91 QLLSLLAPLQDN---RQITISHTPQGVEIAI---NAKVLFNSGDARLLPESFAVLDRIAA 144 Query: 258 VLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + I + GHTD+ P NW LS RA + + G+ R++ I G Sbjct: 145 VLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAGAVVRFFADKGIEAHRMAAI-GR 203 Query: 316 AHHRLKI 322 A + I Sbjct: 204 ADNFPLI 210 Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Query: 19 KKVAIDDTPNNLG--------SWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 K++A D ++ G W I YAD +T LM FL ++++ + + Sbjct: 8 KRLATDKNGHDDGQDSGEQSDRWLISYADLITTLMVLFLALYVLQLAKNSELQ 60 >gi|160880837|ref|YP_001559805.1| OmpA/MotB domain-containing protein [Clostridium phytofermentans ISDg] gi|160429503|gb|ABX43066.1| OmpA/MotB domain protein [Clostridium phytofermentans ISDg] Length = 275 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 110/327 (33%), Gaps = 68/327 (20%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 +K ++ W +AD M +L+ FF++++ + D + + + Sbjct: 7 RKKKTEEASAGAPLWMNTFADLMNLLLCFFVLLFAFSNVDQEKFDQVAASLSSSFSIFSG 66 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 I D Q I++ + + D TN + ++ Sbjct: 67 GHSSIGDGQ---------LINMGVSQ-----LNDFNQYFTNMGQTIDSVDGEKIDELKQL 112 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 +E K + E ++ +L+K ++ Sbjct: 113 LTEANKAETEKMYENITEMSGQYNLDKYLD------------------------------ 142 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ET +TG +I+ + ++D + E + + K+G++ Sbjct: 143 ------------------IETDKTGGQYVLINISGSLLYDSGKAQLKSEALPIFSKVGDI 184 Query: 259 LAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGF 315 L IS+ GHTD P + R N LS RA +A + L+ G+ I I G Sbjct: 185 LKTYKGYRISVIGHTDNVPVTSGIYRSNKELSSARAINAAEYLIDVKGIDPSNIEWI-GR 243 Query: 316 AHHRLK--IASDPMNSANRRIDILVED 340 + +S+ S NRRI+I + + Sbjct: 244 GEYDPIADNSSEAGRSKNRRIEIRIYN 270 >gi|294504689|ref|YP_003568751.1| putative OmpA family protein [Yersinia pestis Z176003] gi|262362751|gb|ACY59472.1| putative OmpA family protein [Yersinia pestis D106004] gi|294355148|gb|ADE65489.1| putative OmpA family protein [Yersinia pestis Z176003] Length = 186 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I K ++ + T + + MF S PE I V++++ + + Sbjct: 48 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 104 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTD+ P + +N LS RA + + + ++G+ D+I + G + Sbjct: 105 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 163 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 164 PVSSNDDATGRSQNRRVEIFV 184 >gi|171319661|ref|ZP_02908754.1| type VI secretion system OmpA/MotB family protein [Burkholderia ambifaria MEX-5] gi|171095114|gb|EDT40122.1| type VI secretion system OmpA/MotB family protein [Burkholderia ambifaria MEX-5] Length = 411 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 11/161 (6%) Query: 185 AMKRKKRLQDLAKKISST-------LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +K++ D+A+ L L+ D I G + + S + R MF Sbjct: 249 SADVQKQIADIARMTPPPAPPPQLHLKQLLQDEIAAGTV--SVDEDARHSAVTFRGDAMF 306 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAY 296 + ++ KI +A ++I G+TD P R+ N LS +RA Sbjct: 307 KPGGASVQASMNPLISKIAAEIAKVPGKVTIIGYTDNVPIRSRHFASNQMLSEERATQVM 366 Query: 297 QVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 Q+L +GV +R+ + G A + + NRR++I Sbjct: 367 QMLQTAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 407 >gi|311695186|gb|ADP98059.1| flagellar motor protein MotD [marine bacterium HP15] Length = 260 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 13/195 (6%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE-----KILAMKRKKRLQD 194 SE + + ++S+N +PP E ++ A R + L+ Sbjct: 50 SETLTGVFNAPQRSFQPIEIGDQPQRSLNAPAENVIPPAVTEAPRNPEMDAQARTEALRA 109 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A ++S L+ + V ET+ + +++ N+ +F + P + V++K Sbjct: 110 MADQLSMEFDELINQGV---VSLETSDQWLELNL---PNSLLFGSGDAEPHYDAFEVVEK 163 Query: 255 IGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I VL + + + G TD P + NW LS RA + ++L+ G+ +R++ + Sbjct: 164 IATVLNNRDNAVKVEGFTDNQPISTSRFPSNWELSAARAAAMVRMLVMEGIEPERLAAV- 222 Query: 314 GFAHHRLKIASDPMN 328 G+ ++ +D Sbjct: 223 GYGQYQPVSRNDTEE 237 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ D +N W I YADF+T+L AFF+VM+ +++ ++ K + + Sbjct: 1 MRRRRQPQDDLHNKERWLISYADFITLLFAFFVVMYSVSSVNEGKYKVLSETLTGVFNAP 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + I + + P+RS + I +T+ + ++ + + + + + + + + Sbjct: 61 QRSFQPI-EIGDQPQRSLNAPAENVIPPAVTEAPRNPEMDAQARTEALRAMADQLSMEFD 119 Query: 137 S 137 Sbjct: 120 E 120 >gi|227876751|ref|ZP_03994860.1| flagellar motor protein B [Mobiluncus mulieris ATCC 35243] gi|306817698|ref|ZP_07451440.1| OmpA/MotB domain protein [Mobiluncus mulieris ATCC 35239] gi|227842648|gb|EEJ52848.1| flagellar motor protein B [Mobiluncus mulieris ATCC 35243] gi|304649512|gb|EFM46795.1| OmpA/MotB domain protein [Mobiluncus mulieris ATCC 35239] Length = 325 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 7/205 (3%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 QS + L S G ++ + + E+I AM L + ++ Sbjct: 59 QSLQVVSPLHTTSGLGLLSGSTSAVNLGSMMGNDTTTAAGQPERIQAMAEASHLNQIKQQ 118 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + L+ ++ T G+++ ++ F + P VL + V Sbjct: 119 VEQALAAAGQTGALQ---MRITEKGLVLGMVASDTY--FKPGDAEVQPTAQAVLAALAPV 173 Query: 259 LAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 LA + E ++I G+ D +P + N+ L+ RA L GV ++ IS A Sbjct: 174 LAGTPEDVAIEGYADPNPQYSAKYPSNYHLAAGRAIEVLIHLRNGGVPGSKLRTISYGAD 233 Query: 318 HRLKIASDPMN-SANRRIDILVEDR 341 H+ ++ + S NRR+DI++ R Sbjct: 234 HQTQVEAGQDAWSLNRRVDIVIMSR 258 >gi|83310388|ref|YP_420652.1| hypothetical protein amb1289 [Magnetospirillum magneticum AMB-1] gi|82945229|dbj|BAE50093.1| Flagellar motor protein [Magnetospirillum magneticum AMB-1] Length = 333 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 30/311 (9%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQ---YFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 +LM F L + + +KA++ + L +K Q S K Sbjct: 31 LLMIFVLAQFFLGQALSGRQKALDDLGREMAALAEKLNLQTKANAALQAELVSSRAEKEK 90 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L + + + ++K+ E I +Q + + E+ + Sbjct: 91 LEHWAAGVQQDMAALLTLKDEKEAELAAEKKISDEGRAQLA-LLSRQIEALKEELARVAA 149 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + D ++ +KE+ + L K +A+ K + LQ + L ++ D Sbjct: 150 ALDASETRDKEQKAQISDLGKRLNVALAGKVEELQKYRSEFFGRLRKVLGD--------- 200 Query: 219 TTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--------EVISI 268 R GI I ++ +F S+ E ++K+ + V+ + Sbjct: 201 --RPGIRIEGDRFVFQSELLFATGSAELGTEGAEQVRKLAATIREINAGMPKGLNWVLRV 258 Query: 269 RGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P + NW LS RA + + L GV DR++ +GF + + + Sbjct: 259 DGHTDKRPITSGKFPSNWELSTARAITVLRALAADGVPRDRLAA-AGFGEFQPVDSGNTE 317 Query: 328 N--SANRRIDI 336 + NRRI+I Sbjct: 318 AAYAKNRRIEI 328 >gi|114563544|ref|YP_751057.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334837|gb|ABI72219.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 429 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 10/156 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++ +D A + L + N+++ E + I I +F ++ P Sbjct: 280 AQQQISRDEALLLQQLLQTEIGKNLLE---VEQLSDRVRIRIGATE---LFASGNTQPRS 333 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +L KI L + I I GHTD P + NW LSL RA S VL S Sbjct: 334 DFEAILAKIALTLESTDGKILITGHTDDEPIFTSKYPSNWHLSLARATSIANVLANSASL 393 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 R+ G ++ +D + NRRI+I + Sbjct: 394 SGRLWP-EGRGESEPRVVNDNEQNRALNRRIEIDLL 428 >gi|268316337|ref|YP_003290056.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333871|gb|ACY47668.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252] Length = 253 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + +P + + + K++L+ K + L N+ V T G+ + I Sbjct: 65 QSEAVIPSIKNQVVQRRLSKEQLE----KYEELIQYLQEHNLEGKVQVNLTDKGLHLIIT 120 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLS 288 D MF + + + +L+ + ++ E + + GHTD P NW LS Sbjct: 121 DS---IMFRSGEAEIIEPSRTILRILAGIIDDRIESVVVEGHTDNRPIHTARFPSNWELS 177 Query: 289 LDRAYSAYQVLMK--SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 RA + + L++ + R + G+ + + + NRR++IL Sbjct: 178 AARAAAVVRFLLEQTDALPPSRYMAV-GYGEFHPRDTNATPEGRARNRRVEIL 229 Score = 40.2 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 19/41 (46%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 W ++D T+L+ FF+++ ++ + K +F Sbjct: 18 APFWMTTFSDMATLLLTFFVMIVAMSEVEVKKFKEALSFFQ 58 >gi|167744038|ref|ZP_02416812.1| hypothetical protein Bpse14_38553 [Burkholderia pseudomallei 14] Length = 379 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 227 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 280 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 281 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 339 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 340 TLDPVAPNDSPANRARNRRVEITLM 364 >gi|120436663|ref|YP_862349.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578813|emb|CAL67282.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 281 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 93/241 (38%), Gaps = 12/241 (4%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 N ++ K T + ++ N + KN ++ ++ L K Sbjct: 25 NELETKQRETQDQLNTATVKLNSCLDEKESLNGQIKNLNNTNAALLNNVGDLATLSKKEA 84 Query: 169 KEENYFLPPLSKEKILAMKRKKRL---QDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + L + ++ + + + + + ++L G + D + + + + Sbjct: 85 ENMERSLESIKEKDLAIRSMQDAMNKKDSVTLALVTSLKGALGDLSDEDIEINVEKGVVY 144 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARD 283 +SI D +FD P VL K+ V+ + + GHTD ++ D Sbjct: 145 VSISD---KLLFDSGRYNIKPRAKEVLGKVATVVKNKPNIEFMVEGHTDDQAISTSMFED 201 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 NW LS+ RA S +VL G+ R++ +G +++ +++ + NRR I+V Sbjct: 202 NWDLSVKRATSVVRVLQDDFGIEPARMTA-AGRSYYIPVASNETAEGRAKNRRTRIVVLP 260 Query: 341 R 341 + Sbjct: 261 K 261 >gi|327481195|gb|AEA84505.1| flagellar motor protein MotB [Pseudomonas stutzeri DSM 4166] Length = 244 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F + + V+ ++ LA + I + GHTD P + NW LS RA S Sbjct: 133 LFGSGRAELEDAGLEVIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASS 192 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 + L +G+ R+S +G+A R A + ++NRR++++++ Sbjct: 193 VVRYLQLAGIEATRLSA-TGYADTRPLADNADERGRASNRRVELVMQT 239 >gi|194288765|ref|YP_002004672.1| replication/virulence associated protein; outer membrane protein, ompa family membrane protein [Cupriavidus taiwanensis LMG 19424] gi|193222600|emb|CAQ68603.1| replication/virulence associated protein; putative outer membrane protein, OmpA family membrane protein [Cupriavidus taiwanensis LMG 19424] Length = 425 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ L+ D I +GV +I R MF + + + + +L K+ ++ Sbjct: 287 RLAELLRDEIARGV-VSVQEDATRSAIT-FRGDDMFGRGRADVSEKILPLLDKVAAEVSK 344 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 T +++ GHTD P + N LS +RA + + L GV+++R+ I G + Sbjct: 345 VTGKVTVIGHTDNVPIKTAKYPSNQALSEERAATVAEYLASKGVAKNRLEAI-GKGDSQP 403 Query: 321 KIASDP--MNSANRRIDILV 338 + + NRR++I+V Sbjct: 404 LADNKAPVGRARNRRVEIVV 423 >gi|220924409|ref|YP_002499711.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219949016|gb|ACL59408.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 337 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 103/297 (34%), Gaps = 28/297 (9%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NN 130 F ++ + D N + + L T + S Q+ + +R + Sbjct: 42 FLSQEISGRDSVLDRLNRQIAELTDLLALERSGRRTLEETTAALRSNLQESETERRRLQD 101 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEENYFLPPLSKEKIL 184 Q + + D EKG + +E ++ ++ L+ + Sbjct: 102 ALTADQGAQGKATELGRQLDVEKGATNRALSQVELLSQQIAAMRQQLAALEEALAASETR 161 Query: 185 AMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTP 235 + + R+ DL +++ L+ V + ++ +L + I+ ++ Sbjct: 162 DRESQARIADLGSRLNVALAQRVQELARYRSDFFGRLRQILGNRSDIRIVGDRFVLQSEV 221 Query: 236 MFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRN-IARDNWR 286 +F + E L +I + + V+ + GHTDA P + NW Sbjct: 222 LFAAGQASLRAEAGPELDRIATAIRELNRQIPSDIPWVLRVDGHTDARPISSSAFPSNWA 281 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 LS RA + Q L+ G+ + F + SD + NRRI++ + +R Sbjct: 282 LSAARAIAVVQYLVGRGIPPQHLLA-GAFGEFQPIDTGTSDEAYARNRRIELKLTER 337 >gi|330904017|gb|EGH34589.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 88 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 36/78 (46%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +LFE T+ G+ I I+D N PMFD S+ P +L + + + Sbjct: 4 ENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVP 63 Query: 264 EVISIRGHTDASPFRNIA 281 +SI GHTDA+PF Sbjct: 64 NKVSISGHTDATPFVGSG 81 >gi|325294742|ref|YP_004281256.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065190|gb|ADY73197.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 255 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 11/133 (8%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGH 271 G T+ +L+ + N +F +S P+ L K+ E++ + I GH Sbjct: 91 GYQIVVTQEYVLLRLF---NKVLFKPNSLELTPKAKEALDKVAEIIKKLPGNYQVRIEGH 147 Query: 272 TD-ASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP- 326 T P + + D+W LS+ RA + + L+ GV+ +I + G+ + R +P Sbjct: 148 TSIEEPTKYLPYIHDDWDLSIRRATTVAKYLVSRGVNPKKIIAV-GYGNTRPLYTWKNPI 206 Query: 327 MNSANRRIDILVE 339 + + NRR++I +E Sbjct: 207 LQARNRRVEIYLE 219 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + +W ++D M++L+ FF++++ ++ D YF Sbjct: 1 MARKKKEECKT--APAWLTSFSDLMSLLLTFFILLYSMSTLDVTKAIKFLSYFQGEKAKS 58 Query: 77 MT 78 Sbjct: 59 FE 60 >gi|167851058|ref|ZP_02476566.1| hypothetical protein BpseB_37821 [Burkholderia pseudomallei B7210] Length = 415 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 263 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 316 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 317 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 375 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 376 TLDPVAPNDSPANRARNRRVEITLM 400 >gi|146282858|ref|YP_001173011.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] gi|145571063|gb|ABP80169.1| flagellar motor protein MotB [Pseudomonas stutzeri A1501] Length = 244 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F + + V+ ++ LA + I + GHTD P + NW LS RA S Sbjct: 133 LFGSGRAELEDAGLEVIDRLVPTLAANAFRIVVEGHTDNLPIQTERFPSNWELSASRASS 192 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 + L +G+ R+S +G+A R A + ++NRR++++++ Sbjct: 193 VVRYLQLAGIEATRLSA-TGYADTRPLADNADERGRASNRRVELVMQT 239 >gi|303325924|ref|ZP_07356367.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3] gi|302863840|gb|EFL86771.1| putative chemotaxis MotB protein [Desulfovibrio sp. 3_1_syn3] Length = 235 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A+KI L G+ + + + + MF S LPE VL Sbjct: 84 IAQKIKQMLMADAVPQSSSGISADDVGVQLRV-----NSDVMFKAGSVDFLPEGEKVLGS 138 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + ++L + +RGH D++ R W LS RA + L GV R+ ++ Sbjct: 139 VLQILKEYNLYLVVRGHADSTEARPPYASAWELSGARAAAVLHYLADHGVKPTRLRGVA- 197 Query: 315 FAHHRLKIA--SDPMNSANRRID 335 + R + + NRR++ Sbjct: 198 YGDTRPLKPGIDEESRAVNRRVE 220 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 40/73 (54%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 +WK+ YADF+T +MAFFL++W++N +T+ + YF+ +++ + + Sbjct: 4 AWKVAYADFVTAMMAFFLLLWVLNMVPPETRAGLAAYFSGERNFDSSSTSPVSNNPFIQN 63 Query: 92 RSSQNKIDLSIDE 104 + DL I+E Sbjct: 64 TDKIDTRDLKINE 76 >gi|167467398|ref|ZP_02332102.1| possible OmpA/MotB family protein [Yersinia pestis FV-1] Length = 263 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I K ++ + T + + MF S PE I V++++ + + Sbjct: 125 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 181 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTD+ P + +N LS RA + + + ++G+ D+I + G + Sbjct: 182 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 240 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 241 PVSSNDDATGRSQNRRVEIFV 261 >gi|168334555|ref|ZP_02692711.1| flagellar motor protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 251 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 17/172 (9%) Query: 177 PLSKEKILAMKRKK---RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 P +++ A K+ ++++ +++ L DN V E ++++ D Sbjct: 81 PEEEDRKAAENIKQITIEMENIKEELDKFLKSEGLDN---KVTVEQDGEEVVLTFED--- 134 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNI-ARDNWRLSL 289 +FD ++ P+ + VL KIG + + GHTD P ++ NW LS Sbjct: 135 FMLFDSGLAVIKPDGLEVLGKIGNEIKQYLEDDYIARAEGHTDNLPINSLIFPSNWELSA 194 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S + L+ G+S RIS GF +D + NRR++I + Sbjct: 195 SRAISVAKYLINDIGISPMRISA-EGFGEFYPIATNDTPEGRAQNRRVEIKI 245 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK ++ P +W ++D MT+L+ FF++++ +++ D A ++ G Sbjct: 1 MAKKKKEEEAPAGAPAWMATFSDLMTLLLCFFVLLFSMSSLDIAKFTAFINSYS--GSTG 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 + + N + D +N + I N K++ + Sbjct: 59 IIDGGEVLLNSNGMLGGGVENVPEEEDRKAAENIKQITIEMENIKEELDKF 109 >gi|53716349|ref|YP_105194.1| hypothetical protein BMAA0398 [Burkholderia mallei ATCC 23344] gi|53723119|ref|YP_112104.1| hypothetical protein BPSS2105 [Burkholderia pseudomallei K96243] gi|67642591|ref|ZP_00441345.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|121596826|ref|YP_991186.1| hypothetical protein BMASAVP1_1592 [Burkholderia mallei SAVP1] gi|124382978|ref|YP_001025575.1| hypothetical protein BMA10229_1777 [Burkholderia mallei NCTC 10229] gi|126443591|ref|YP_001063957.1| hypothetical protein BURPS668_A2966 [Burkholderia pseudomallei 668] gi|126447095|ref|YP_001077649.1| hypothetical protein BMA10247_A0447 [Burkholderia mallei NCTC 10247] gi|126458045|ref|YP_001076870.1| hypothetical protein BURPS1106A_A2841 [Burkholderia pseudomallei 1106a] gi|167821238|ref|ZP_02452918.1| hypothetical protein Bpse9_39318 [Burkholderia pseudomallei 91] gi|167829581|ref|ZP_02461052.1| hypothetical protein Bpseu9_38230 [Burkholderia pseudomallei 9] gi|167908000|ref|ZP_02495205.1| hypothetical protein BpseN_37601 [Burkholderia pseudomallei NCTC 13177] gi|226193911|ref|ZP_03789512.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|237508208|ref|ZP_04520923.1| OmpA-family protein [Burkholderia pseudomallei MSHR346] gi|242312724|ref|ZP_04811741.1| ompA family protein [Burkholderia pseudomallei 1106b] gi|254177324|ref|ZP_04883980.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|254184501|ref|ZP_04891090.1| ompA family protein [Burkholderia pseudomallei 1655] gi|254194178|ref|ZP_04900610.1| ompA family protein [Burkholderia pseudomallei S13] gi|254203138|ref|ZP_04909500.1| ompA family protein [Burkholderia mallei FMH] gi|254208472|ref|ZP_04914821.1| ompA family protein [Burkholderia mallei JHU] gi|254300798|ref|ZP_04968242.1| ompA family protein [Burkholderia pseudomallei 406e] gi|254359345|ref|ZP_04975617.1| ompA family protein [Burkholderia mallei 2002721280] gi|52213533|emb|CAH39585.1| putative outer membrane porin protein [Burkholderia pseudomallei K96243] gi|52422319|gb|AAU45889.1| ompA family protein [Burkholderia mallei ATCC 23344] gi|121224624|gb|ABM48155.1| ompA family protein [Burkholderia mallei SAVP1] gi|126223082|gb|ABN86587.1| ompA family protein [Burkholderia pseudomallei 668] gi|126231813|gb|ABN95226.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|126239949|gb|ABO03061.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|147746183|gb|EDK53261.1| ompA family protein [Burkholderia mallei FMH] gi|147751159|gb|EDK58227.1| ompA family protein [Burkholderia mallei JHU] gi|148028532|gb|EDK86492.1| ompA family protein [Burkholderia mallei 2002721280] gi|157810991|gb|EDO88161.1| ompA family protein [Burkholderia pseudomallei 406e] gi|160698364|gb|EDP88334.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|169650929|gb|EDS83622.1| ompA family protein [Burkholderia pseudomallei S13] gi|184215093|gb|EDU12074.1| ompA family protein [Burkholderia pseudomallei 1655] gi|225933856|gb|EEH29842.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|235000413|gb|EEP49837.1| OmpA-family protein [Burkholderia pseudomallei MSHR346] gi|238523774|gb|EEP87210.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|242135963|gb|EES22366.1| ompA family protein [Burkholderia pseudomallei 1106b] gi|261827068|gb|ABM98527.2| ompA family protein [Burkholderia mallei NCTC 10229] Length = 438 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 286 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 339 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 340 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 398 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 399 TLDPVAPNDSPANRARNRRVEITLM 423 >gi|218929795|ref|YP_002347670.1| putative OmpA family protein [Yersinia pestis CO92] gi|115348406|emb|CAL21342.1| putative OmpA family protein [Yersinia pestis CO92] Length = 261 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I K ++ + T + + MF S PE I V++++ + + Sbjct: 123 RLSILLKDEIAKQLVSVDETSNNSKVIF---KGDSMFMVGSDNVRPEMIDVIKRVAQEVH 179 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I I GHTD+ P + +N LS RA + + + ++G+ D+I + G + Sbjct: 180 RVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKI-RFEGKGETQ 238 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 239 PVSSNDDATGRSQNRRVEIFV 259 >gi|293395553|ref|ZP_06639836.1| OmpA family protein [Serratia odorifera DSM 4582] gi|291421872|gb|EFE95118.1| OmpA family protein [Serratia odorifera DSM 4582] Length = 406 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L + I +G++ + I+ + +FD +++ P I V+ +I + + Sbjct: 250 NLKTFLRKEIAEGLVVVRDEAQQSVVIL--KGDGLFDSAATTVRPAYIPVIDRIAKAMNG 307 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I + G++D P R+ NW LSL RA + + L K + R+ G Sbjct: 308 VSGKILVTGYSDNLPIRSARFPSNWELSLARAEAVSERLQKQLDNPQRVKA-EGRGDSNP 366 Query: 321 KIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 367 VAPNDSKENRALNRRVEITLL 387 >gi|315921071|ref|ZP_07917311.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694946|gb|EFS31781.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 280 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 15/219 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N+Q S KN L ++ G + + + E+ LS++K +R++ + +L Sbjct: 49 NAQMSAQIKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 108 Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247 I + + + N+ +L +T + + D + + +F S+ Sbjct: 109 QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 167 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K+ V Sbjct: 168 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 227 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +I + SG + ++ S NRR +I++ + Sbjct: 228 NPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 265 >gi|255533363|ref|YP_003093735.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346347|gb|ACU05673.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 282 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + K + L +++ L+ ++ ++ V + + + IS+ D ++ S L Sbjct: 109 VNTKNKSDSLNMVLTNNLTRSLSREELRDVDVQVLKGVVYISLSDNM---LYKSGSYEIL 165 Query: 246 PETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-S 302 P+ L KI +++ + I G+TD P + R+NW LS RA S Q L Sbjct: 166 PKAGETLSKIAKIIKDYRDYDVLIEGNTDNVPISMVNIRNNWDLSALRASSVVQALQNTY 225 Query: 303 GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 GV R++ G + A+D + NRR I++ + Sbjct: 226 GVDPKRLTA-GGRGEYNPLAANDTEAGKAKNRRTQIIITPK 265 >gi|288957797|ref|YP_003448138.1| chemotaxis protein [Azospirillum sp. B510] gi|288910105|dbj|BAI71594.1| chemotaxis protein [Azospirillum sp. B510] Length = 464 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 24/291 (8%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + L++ D E + + ++ + D+++ + + R++ Sbjct: 175 QALLSELGATRDRAKSLESELASATEKTMLAQKEIDKRDIRLKALETQLTDNRMQAQKDL 234 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK----SINKEENYFLPPLSKEKILAMKRK 189 + SLT + G + DL ++ + L + + +K Sbjct: 235 DQRDLRIRDLMASLTGEQAAGTRSKQQIDLLNQQLLALRDQLARIGAALEASEKASADQK 294 Query: 190 KRLQDLAKKISSTLSGLVADNIV-KGVLFETTRTGIL----ISIIDQ----RNTPMFDKS 240 ++ +L +++ L+ V D K F R + + I+ ++ +F Sbjct: 295 VQIAELGARLNQALAAKVQDLARYKSEFFGRVREALGNRPDVRIVGDRFVFQSELLFPSG 354 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIARDNWRLSLDRA 292 S+ L + L +VI + GHTD P R NW LS RA Sbjct: 355 SATLEEAGKQRLADLARTLIEIGKVIPPDINWVLRVDGHTDIKPVRFQFSSNWELSSARA 414 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 S + L+ G+ +R++ + F + SD + NRRI+I ++ R Sbjct: 415 LSVVKFLIDQGIPAERLAAAA-FGEFQPIDPGTSDEALAKNRRIEIKLDQR 464 >gi|332703401|ref|ZP_08423489.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553550|gb|EGJ50594.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 249 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 I +K ++++ + +K+ + + +KGV+ GI+ + + MF Sbjct: 86 IDQVKLQRQIMENQRKLFTEVQFYQNTKGLKGVVGAHFDKGIITLRV--PSDVMFAPGQV 143 Query: 243 IPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 + + VL+ + ++L H+ + I+IRG TD +R DNW +S R+ + +VL Sbjct: 144 ELTTQGVAVLRDLKDLLIKHADQRINIRGFTDDVRPSGNSRFKDNWEISAMRSVNVLRVL 203 Query: 300 MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 M G+ R++ +G A ++ + NRRI+I +E R G Sbjct: 204 MSLGMEPTRLTA-TGLADLEPLFPNNSTENRARNRRIEITLEKRVG 248 >gi|262199850|ref|YP_003271059.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262083197|gb|ACY19166.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 266 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 12/225 (5%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + + ++ ++ + T SE+ + ++ + + L Sbjct: 36 DELTATQARLDLAEQERDANAQEVASLQTELSERAEMSDETRRRMAKLTDDMQATEQELL 95 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + K ++RL+ +++ LV ++ + +++ + + +F Sbjct: 96 ELRAQQQKAEERLKAF-RQLYDRFQALVDTGKLQ---VDFRNGQMVLKL---PSEVLFPS 148 Query: 240 SSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQ 297 + + L ++ +L + GHTDA R +DNW LS RA S Sbjct: 149 GRAKLSDKGQEALSEVLNILMEFKDRRFLVAGHTDAVKIRGGRFKDNWDLSTARAVSVVD 208 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 ++++G + + +G+ +D + NRRI+I++ Sbjct: 209 YMVEAGFDPNNLGA-AGYGEFDPVAPNDTAENRALNRRIEIILVP 252 >gi|167722035|ref|ZP_02405271.1| hypothetical protein BpseD_23689 [Burkholderia pseudomallei DM98] Length = 433 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|6045178|dbj|BAA85317.1| MotB protein, partial [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 176 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 1/175 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 + + S+ + + ++G + + + K + + P ++ Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRD 175 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVV 251 IID +N PMF S+ P + Sbjct: 152 QIIDSQNRPMFKTGSAEVEPYMRDI 176 >gi|323225691|gb|EGA09915.1| hypothetical protein SEEM0055_14308 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 324 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 186 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 242 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 243 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 301 Query: 320 LKIASD--PMNSANRRIDILVED 340 +D + NRR++ILV + Sbjct: 302 PVADNDSKAGRAKNRRVEILVVE 324 >gi|330814655|ref|YP_004362830.1| type VI secretion system OmpA/MotB family protein [Burkholderia gladioli BSR3] gi|327374647|gb|AEA65998.1| type VI secretion system OmpA/MotB family protein [Burkholderia gladioli BSR3] Length = 420 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 4/138 (2%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L L+ D I G + + S + R MF ++ KI + Sbjct: 283 LKQLLKDEIAAGTV--SVDEDARHSAVTFRGDAMFPPGGVTIKSAMAPLVAKIAGEIVKV 340 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRL 320 +S+ G+TD P R+ N LS +RA Q+L +GV +R+ + G A Sbjct: 341 PGKVSVLGYTDNLPIRSRQFPSNEALSEERATQVLQMLQAAGVPANRLEAVGKGDADPIG 400 Query: 321 KIASDPMNSANRRIDILV 338 + + NRR++I+V Sbjct: 401 DNRTAQGRAQNRRVEIVV 418 >gi|167002401|ref|ZP_02268191.1| ompA family protein [Burkholderia mallei PRL-20] gi|243061889|gb|EES44075.1| ompA family protein [Burkholderia mallei PRL-20] Length = 438 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 286 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 339 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 340 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 398 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 399 TLDPVAPNDSPANRARNRRVEITLM 423 >gi|167725111|ref|ZP_02408347.1| hypothetical protein BpseD_39196 [Burkholderia pseudomallei DM98] Length = 407 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 255 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 308 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 309 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 367 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 368 TLDPVAPNDSPANRARNRRVEITLM 392 >gi|167916344|ref|ZP_02503435.1| hypothetical protein Bpse112_38087 [Burkholderia pseudomallei 112] Length = 421 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 269 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 322 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 323 ALNQVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 381 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 382 TLDPVAPNDSPANRARNRRVEITLM 406 >gi|153004433|ref|YP_001378758.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028006|gb|ABS25774.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 498 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289 R F+ S+ PE+ +L ++ +L E + + GHTD A N LS Sbjct: 390 RGKVQFETGSARLKPESQRLLDQVASILRAHPEIRRVRVEGHTDDV---GPALTNKELSE 446 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S L++ G++ R+ I G+ R + + NRR++ ++ Sbjct: 447 RRADSVRDALVRRGIAPSRL-SIRGYGESRPIAPNKTKAGRAKNRRVEFVI 496 >gi|213855850|ref|ZP_03384090.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 172 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 + + S+ + + ++G + + + K + + P Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPY 172 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPMFDKSSSIPLPE 247 IID +N PMF S+ P Sbjct: 152 QIIDSQNRPMFKTGSAEVEPY 172 >gi|76818070|ref|YP_336766.1| hypothetical protein BURPS1710b_A1609 [Burkholderia pseudomallei 1710b] gi|126457603|ref|YP_001074182.1| hypothetical protein BURPS1106A_A0139 [Burkholderia pseudomallei 1106a] gi|134280945|ref|ZP_01767655.1| SciP protein [Burkholderia pseudomallei 305] gi|167826573|ref|ZP_02458044.1| hypothetical protein Bpseu9_23060 [Burkholderia pseudomallei 9] gi|167848091|ref|ZP_02473599.1| hypothetical protein BpseB_22661 [Burkholderia pseudomallei B7210] gi|167905011|ref|ZP_02492216.1| hypothetical protein BpseN_22374 [Burkholderia pseudomallei NCTC 13177] gi|167913331|ref|ZP_02500422.1| hypothetical protein Bpse112_22785 [Burkholderia pseudomallei 112] gi|226198766|ref|ZP_03794330.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|242313911|ref|ZP_04812928.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|254189633|ref|ZP_04896143.1| SciP protein [Burkholderia pseudomallei Pasteur 52237] gi|254195529|ref|ZP_04901957.1| SciP protein [Burkholderia pseudomallei S13] gi|76582543|gb|ABA52017.1| OmpA family membrane protein [Burkholderia pseudomallei 1710b] gi|126231371|gb|ABN94784.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|134247967|gb|EBA48051.1| SciP protein [Burkholderia pseudomallei 305] gi|157937311|gb|EDO92981.1| SciP protein [Burkholderia pseudomallei Pasteur 52237] gi|169652276|gb|EDS84969.1| SciP protein [Burkholderia pseudomallei S13] gi|225929206|gb|EEH25229.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|242137150|gb|EES23553.1| OmpA family protein [Burkholderia pseudomallei 1106b] Length = 433 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|126668169|ref|ZP_01739130.1| Flagellar motor protein [Marinobacter sp. ELB17] gi|126627318|gb|EAZ97954.1| Flagellar motor protein [Marinobacter sp. ELB17] Length = 279 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 76/192 (39%), Gaps = 9/192 (4%) Query: 152 EKGKDLCKSTDLEKSINKEEN-YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + G K +D S++ ++ P L E+ + + + SS + L + Sbjct: 72 DGGSLPIKISDGNSSLDPDKQLQAEPELIDERSTSDGVTPVSEGVITLASSLIRELENEV 131 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + ++I + F + E + +++++ +VL + + + G Sbjct: 132 ASGALNVDYDEHQVIIRFSEDAT---FMSGDATIKKEMLPIIERVVDVLKNCRGDVVVAG 188 Query: 271 HTDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--P 326 +TD P + NW LS RA S L+ V DR+ +G A + ++ Sbjct: 189 YTDDRPIASSRYRSNWDLSAARAVSVVHELVLNRDVPADRVIA-AGRAETNPLVPNNSPE 247 Query: 327 MNSANRRIDILV 338 + NRR++I + Sbjct: 248 NRAVNRRVEIAI 259 >gi|76817452|ref|YP_336363.1| hypothetical protein BURPS1710b_A1205 [Burkholderia pseudomallei 1710b] gi|134278396|ref|ZP_01765110.1| ompA family protein [Burkholderia pseudomallei 305] gi|167924203|ref|ZP_02511294.1| hypothetical protein BpseBC_36953 [Burkholderia pseudomallei BCC215] gi|217422136|ref|ZP_03453639.1| ompA family protein [Burkholderia pseudomallei 576] gi|254185740|ref|ZP_04892258.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|254263509|ref|ZP_04954374.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|76581925|gb|ABA51399.1| ompA family protein [Burkholderia pseudomallei 1710b] gi|134250180|gb|EBA50260.1| ompA family protein [Burkholderia pseudomallei 305] gi|157933426|gb|EDO89096.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|217394367|gb|EEC34386.1| ompA family protein [Burkholderia pseudomallei 576] gi|254214511|gb|EET03896.1| ompA family protein [Burkholderia pseudomallei 1710a] Length = 438 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 286 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 339 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 340 ALNRVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 398 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 399 TLDPVAPNDSPANRARNRRVEITLM 423 >gi|325281257|ref|YP_004253799.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313066|gb|ADY33619.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712] Length = 276 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 91/239 (38%), Gaps = 13/239 (5%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 + ++ +G + + + ++ + ++ + K L K Sbjct: 37 ERVLNRNLGQQKDEIAKLKQQITDLMSDTTRLGQAIRDYRKSLYSNLSEQEKLNMLLKEK 96 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 ++ ++K + + RLQ L + L G +D + I ++ Sbjct: 97 MEKLAEREATINKLQAEVDAQNARLQSLLNSVKDALLGFSSDEL----TVTEKNGKIYVA 152 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIA-RDNW 285 + D +F+ S+ + L K+ EVL + I GHTD P + + +DNW Sbjct: 153 MSD---KLLFESGSAQVNKQGKEALGKLAEVLKKQHDIDVFIEGHTDNKPIKTVQFKDNW 209 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 LS+ RA S ++L K GV+ +I G ++ + NRR +I++ + Sbjct: 210 DLSVVRATSVVRILTKDYGVNPLQILP-CGRGEFMPVDNNESVEGRAHNRRTEIIMAPK 267 >gi|260467043|ref|ZP_05813223.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] gi|259029152|gb|EEW30448.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] Length = 343 Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 23/323 (7%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 T+L+A ++ + + I + L + + ++Q+K D Sbjct: 23 LSTLLLAIMFLLTVFVLAQFLLGREISGK-DTALSRLNSQINELTQLLALERSTAQDKDD 81 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + + ++ + + Q + + N + + Sbjct: 82 SLANLQASLSAAEAEKSRLEQLLAQGAGAGDAANQRAAALGGELDNQRQISQQALSQVEI 141 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------ADNIV 212 ++ K+ L+ + ++ DL ++++ L+ V +D Sbjct: 142 LNQQIAALRKQIGALEDALNVSETRDRDSNTKIADLGRRLNVALAQRVQELNRYRSDFFG 201 Query: 213 KGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLP----ETIVVLQKIGEVLAHSTEVI 266 + R I I ++ +F S + E + I E+ I Sbjct: 202 RLREILADRENIRIVGDRFVFQSEVLFPTGSEVINDAGKVEMKKLADAIIELQKEIPPEI 261 Query: 267 S----IRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GHTD P RDNW LS R+ S + L+++GV +R+ +GF + Sbjct: 262 NWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIENGVPANRLVA-AGFGEFQP 320 Query: 321 KIASDPMNSA--NRRIDILVEDR 341 +D + NRRI++ + +R Sbjct: 321 LDPADTEEARNKNRRIELKLTER 343 >gi|237508587|ref|ZP_04521302.1| type IV/VI secretion system protein, DotU family [Burkholderia pseudomallei MSHR346] gi|235000792|gb|EEP50216.1| type IV/VI secretion system protein, DotU family [Burkholderia pseudomallei MSHR346] Length = 439 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 301 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 358 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 359 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 417 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 418 VAENATPAGRSRNRRVEIAV 437 >gi|154490982|ref|ZP_02030923.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC 43184] gi|154088730|gb|EDN87774.1| hypothetical protein PARMER_00899 [Parabacteroides merdae ATCC 43184] Length = 278 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 16/210 (7%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM---KRKKRLQDLA 196 + KN S ++ + L ++++ N L + +R+Q+L Sbjct: 67 TRMGKNIRNYQSMLNTNMTEQEKLNSLLSQKMNELDERERTINELQDMINAQTERVQNLL 126 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + L G +D + + +++ D +F+ S+ L K+ Sbjct: 127 NSVKDALLGFSSDEL----TVREKDGKVYVAMSD---KLLFESGSARVDKRGKEALAKLA 179 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 EVL ++ + I GHTD+ P +DNW LS+ RA S ++L K GV +I + Sbjct: 180 EVLNKQSDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVKPLQI-QPC 238 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDR 341 G ++ + NRR +I++ + Sbjct: 239 GRGEFMPVADNETADGRAKNRRTEIIMAPK 268 >gi|307699909|ref|ZP_07636960.1| OmpA family protein [Mobiluncus mulieris FB024-16] gi|307614947|gb|EFN94165.1| OmpA family protein [Mobiluncus mulieris FB024-16] Length = 325 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 7/205 (3%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 QS + L S G ++ + + E+I AM L + ++ Sbjct: 59 QSLQVVSPLHTTSGLGLLSGSTSAVNLGSMMGNDTTTAAGQPERIQAMAEASHLNQIKQQ 118 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + L+ ++ T G+++ ++ F + P VL + V Sbjct: 119 VEQALAAAGQTGALQ---MRITEKGLVLGMVASDTY--FKPGDAEVQPTAQAVLAALAPV 173 Query: 259 LAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + E ++I G+ D +P + N+ L+ RA L GV ++ IS A Sbjct: 174 LTGTPEDVAIEGYADPNPQYSAKYPSNYHLAAGRAIEVLIHLRNGGVPGSKLRTISYGAD 233 Query: 318 HRLKIASDPMN-SANRRIDILVEDR 341 H+ ++ + S NRR+DI++ R Sbjct: 234 HQTQVEAGQDAWSLNRRVDIVIMSR 258 >gi|217423043|ref|ZP_03454545.1| OmpA family protein [Burkholderia pseudomallei 576] gi|254182960|ref|ZP_04889553.1| OmpA family protein [Burkholderia pseudomallei 1655] gi|254264206|ref|ZP_04955071.1| SciP protein [Burkholderia pseudomallei 1710a] gi|254299754|ref|ZP_04967203.1| SciP protein [Burkholderia pseudomallei 406e] gi|157809358|gb|EDO86528.1| SciP protein [Burkholderia pseudomallei 406e] gi|184213494|gb|EDU10537.1| OmpA family protein [Burkholderia pseudomallei 1655] gi|217393951|gb|EEC33971.1| OmpA family protein [Burkholderia pseudomallei 576] gi|254215208|gb|EET04593.1| SciP protein [Burkholderia pseudomallei 1710a] Length = 439 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 301 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVAR 358 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 359 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 417 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 418 VAENATPAGRSRNRRVEIAV 437 >gi|83593142|ref|YP_426894.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|83576056|gb|ABC22607.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 19/189 (10%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 S++ + + +E I + + K +++L ++ + L +++ V + G+ Sbjct: 44 SSVDLVQYEKVKAGIQESIGSREVTKPIEELRQQTGDVIKSLQVEDV---VGLGQDQQGL 100 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIA 281 +I ++ ++ S+ P I VL+++ L I I+GHTD P Sbjct: 101 VIEF---ASSAFYEPGSADIRPTAIPVLEQVIATLNEPRYQGFQIEIQGHTDDIPINTAQ 157 Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSA-------NR 332 NW LS RA + ++ GV+++R+ I+ +A K+ + P A NR Sbjct: 158 YPSNWELSGARATRVLRFMLDQGVAKERVLAIA-YADVAPKVPNRTPEGQAIPLNQELNR 216 Query: 333 RIDILVEDR 341 RI + V R Sbjct: 217 RIAVRVFPR 225 Score = 39.1 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 68/222 (30%), Gaps = 18/222 (8%) Query: 20 KVAIDDTPNN--LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI-EQYFNPFGKNL 76 D P + +W I +AD +L+ FF ++ I++ D + + G Sbjct: 7 GGRHHDAPEHDDTDAWLISFADMSCLLLGFFAMLASISSVDLVQYEKVKAGIQESIGSRE 66 Query: 77 MTASK--------------GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 +T + D + I+ + S D++ + + Sbjct: 67 VTKPIEELRQQTGDVIKSLQVEDVVGLGQDQQGLVIEFASSAFYEPGSADIRPTAIPVLE 126 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 Q N Y + + + + ++ + + + ++ ++KE+ Sbjct: 127 QVIATLNEPRYQGFQIEIQGHTDDIPINTAQYPSNWELSGA-RATRVLRFMLDQGVAKER 185 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +LA+ + + + + + + + I Sbjct: 186 VLAIAYADVAPKVPNRTPEGQAIPLNQELNRRIAVRVFPRAI 227 >gi|167899688|ref|ZP_02487089.1| hypothetical protein Bpse7_38555 [Burkholderia pseudomallei 7894] Length = 407 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F S+ + + VL ++ + Sbjct: 255 RVAKFLEPEIAAGL-----VSVRDEADRSVIV-LRGDGLFGSGSTSVIDRYMPVLTRVAD 308 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ +RI+ G Sbjct: 309 ALNRVQGNVRVSGYTDDTPVHTARFASNWDLSRERAQAVRSLIAARLDRPERITA-EGRG 367 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 368 TLDPVAPNDSPANRARNRRVEITLM 392 >gi|53721140|ref|YP_110125.1| hypothetical protein BPSS0102 [Burkholderia pseudomallei K96243] gi|167818184|ref|ZP_02449864.1| hypothetical protein Bpse9_23811 [Burkholderia pseudomallei 91] gi|167896649|ref|ZP_02484051.1| hypothetical protein Bpse7_23090 [Burkholderia pseudomallei 7894] gi|167921273|ref|ZP_02508364.1| hypothetical protein BpseBC_22178 [Burkholderia pseudomallei BCC215] gi|52211554|emb|CAH37548.1| OmpA family membrane protein [Burkholderia pseudomallei K96243] Length = 433 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVAR 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|126444974|ref|YP_001061168.1| hypothetical protein BURPS668_A0162 [Burkholderia pseudomallei 668] gi|126224465|gb|ABN87970.1| SciP protein [Burkholderia pseudomallei 668] Length = 433 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S LPE VL K+ +A Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVAR 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|304393260|ref|ZP_07375188.1| OmpA/MotB domain protein [Ahrensia sp. R2A130] gi|303294267|gb|EFL88639.1| OmpA/MotB domain protein [Ahrensia sp. R2A130] Length = 343 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 113/345 (32%), Gaps = 26/345 (7%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 + + D+ + + + + +M V + + N + Sbjct: 4 RSRRRGSDSVSYWPGFVDALSTLLLAIMFLLSVFVLAQFLLSQEISGKDTVLNRLNSQIN 63 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 ++ + EQ+ + LS ++ + + Sbjct: 64 ELTQLLALEQSAKQDLEDQIATLSSGLSTAESERSRLQELLSSGSGVAEEAETRASGLSE 123 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 E K S S+ + + L K I E+ ++++ + K + DL + Sbjct: 124 TLDEERKVSRRAMSQVALLNQQISALRKQIASLEDALDVSETRDRESSTK----IADLGR 179 Query: 198 KISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +++ L+ V + ++ +L ++ ++ +F + Sbjct: 180 RLNVALAQRVQELNRFRSDFFGRLRDILGARDDIRVVGDRFVFQSEVLFPSGGATLNEAG 239 Query: 249 IVVLQKIGEVL--------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQV 298 + + K+ L V+ + GHTD P R DNW LS RA S + Sbjct: 240 LGEMAKLANALIELGEEIPDEIDWVLRVDGHTDNIPLSGSGRYADNWELSSGRATSVVKY 299 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 L+ GV +R+ +GF + D + NRRI++ + ++ Sbjct: 300 LITQGVPAERLVA-AGFGEFQPLEDVDTQEARDRNRRIELKLTEK 343 >gi|218662295|ref|ZP_03518225.1| hypothetical protein RetlI_23953 [Rhizobium etli IE4771] Length = 223 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 15/219 (6%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +Q + + +L++ + + ++ + RL Sbjct: 6 DEQKQVSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVAL 65 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L+ +D + + R I I ++ +F + PE + K Sbjct: 66 AARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMAK 125 Query: 255 IGEVLAHSTEVI--------SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGV 304 + L + I + GHTD P RDNW LS RA S + L+ GV Sbjct: 126 LATALLDLAKEIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGV 185 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 DR+ +GF + D + NRRI++ + ++ Sbjct: 186 PADRLVA-AGFGEFQPIAPGDTPEARATNRRIELKLTEK 223 >gi|198276042|ref|ZP_03208573.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135] gi|198271671|gb|EDY95941.1| hypothetical protein BACPLE_02226 [Bacteroides plebeius DSM 17135] Length = 280 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 24/238 (10%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 N +D G Q +Q + S + ++ G+ L + + EK+I Sbjct: 52 NEMDKMRGQIAQLQQDTSRKGTSIRHYQQLLSSNMNEQEKLNALLGEKLKELDEREKTIQ 111 Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 + ++ ++ ++Q+L + L G +D + + +++ Sbjct: 112 ELQSMI-----------DQQNAQVQNLLNSVKDALLGFSSDEL----TVREQNGKVYVAM 156 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWR 286 D +F S+ L K+ EVL TE + I GHTD P +DNW Sbjct: 157 SD---KLLFQSGSAKLDKRGEEALGKLAEVLNKQTEIDVCIEGHTDNKPIHTAQFKDNWD 213 Query: 287 LSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS+ RA S ++L K V+ +I + SG ++ + NRR +I++ + Sbjct: 214 LSVIRATSVVRILIEKYKVNPLQI-QPSGRGEFMPVADNETAEGRAKNRRTEIIMSPK 270 >gi|186470894|ref|YP_001862212.1| type VI secretion system OmpA/MotB family protein [Burkholderia phymatum STM815] gi|184197203|gb|ACC75166.1| type VI secretion system OmpA/MotB family protein [Burkholderia phymatum STM815] Length = 447 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 R MF + ++ KI +A +S+ G+TD P R+ N LS + Sbjct: 333 RGDSMFPPGGASVKATMGPLIAKIAAEIARVPGKVSVLGYTDNVPIRSRQFASNDALSEE 392 Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 RA Q+L +GV R+ + G A ++ + NRR++I V Sbjct: 393 RATQVMQILQAAGVPASRLEAVGKGDADPVADNSTPQGRAQNRRVEITV 441 >gi|330962099|gb|EGH62359.1| hypothetical protein PMA4326_26442 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 437 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+G +AD+I G + + S++ R +F S+ + + ++ +I + + Sbjct: 295 RLAGFLADDIKAGKV--AVEDAVDRSVVTIRGDELFASGSATIVDDFQPLMLRIADAIRK 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I GH+D P + NW LS RA ++L R + G + Sbjct: 353 VKGDVRITGHSDNRPIATLRFPSNWALSQARAEQVLRILAAKTGQPQRFTA-EGRSDTEP 411 Query: 321 K--IASDPMNSANRRIDILVE 339 A+ + NRR++I V Sbjct: 412 LGSNATAEGRAKNRRVEITVL 432 >gi|116253762|ref|YP_769600.1| hypothetical protein RL4023 [Rhizobium leguminosarum bv. viciae 3841] gi|115258410|emb|CAK09513.1| putative chemotaxis protein [Rhizobium leguminosarum bv. viciae 3841] Length = 343 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 108/340 (31%), Gaps = 18/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + T + + + + +M V + ++ + + Sbjct: 5 RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLSRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E+ + + +L + N Q + Sbjct: 65 LTQLLALEKGSNQDLQDSVANLQASLASAEGDRSRLQALLNAGSGGQDAAQKRIGSMTQE 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E + S S+ + L + I E K+++ K L Sbjct: 125 LDEQKQVSERALSQVELLNQQIAALRRQIAAVEAALQASEEKDRVSQTKIADLGSRLNVA 184 Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ L+ +D + + R I I ++ +F + PE + Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMA 244 Query: 254 KIG--------EVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG 303 K+ E+ V+ + GHTD P RDNW LS RA S + L+ G Sbjct: 245 KLAAALLDLAKEIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARAISVVKFLIAQG 304 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V DR+ +GF + D ++ NRRI++ + ++ Sbjct: 305 VPADRLVA-AGFGEFQPIAPGDTPDARSTNRRIELKLTEK 343 >gi|257457774|ref|ZP_05622935.1| OmpA family protein [Treponema vincentii ATCC 35580] gi|257444824|gb|EEV19906.1| OmpA family protein [Treponema vincentii ATCC 35580] Length = 434 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 10/149 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +KI L + D + E T GI IS+ F+ S+ LP L+KI Sbjct: 293 KEKIVEILDKNIRDMGIPNTTVERTDEGITISL----ENIQFEPDSARLLPAEKEKLKKI 348 Query: 256 GEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 G++LA + I GHT A R R LS RA + L++ GV E G Sbjct: 349 GDILASYPDYELLISGHT-ALAGRAEDRQV--LSEQRASAVANYLIELGVREKHHIFTRG 405 Query: 315 FAHHRLKIASDPMN--SANRRIDILVEDR 341 F + + + NRR++I V ++ Sbjct: 406 FGAEKPIAPNTTEANKARNRRVEITVLEK 434 >gi|326791532|ref|YP_004309353.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427] gi|326542296|gb|ADZ84155.1| OmpA/MotB domain protein [Clostridium lentocellum DSM 5427] Length = 248 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 12/243 (4%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 E K + + + + ++ +E + + + Sbjct: 5 EDQPKKGAPAYMNTYGDMMTLLLTFFVLLFAMSTVDAEKFEALASSFHASVSIFDGGQTI 64 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRT 222 N EN KE ++++ + K + V A I + + + Sbjct: 65 RIDNNVLENGMSQFPVKETQFSIEQAYQEAQETTKAEQDIKAYVKAKEIDDKITVQKSGD 124 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRN 279 I+I D +FD + P I L IGE L + + GHTD P Sbjct: 125 MIVIRFADI---LLFDTGKADIKPGAIPNLNLIGEKLREYIDQGYHLRVEGHTDNQPIHT 181 Query: 280 IA-RDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 NW LS RA + + L + + +IS G + A+ + NRR++ Sbjct: 182 AQFPSNWELSSARAIAVMRFYLEEMDFNPSKISA-EGMGEYHPISSNATSEERAQNRRVE 240 Query: 336 ILV 338 I + Sbjct: 241 IKL 243 >gi|293408320|ref|ZP_06652159.1| hypothetical protein ECEG_03255 [Escherichia coli B354] gi|291471498|gb|EFF13981.1| hypothetical protein ECEG_03255 [Escherichia coli B354] Length = 433 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L E + R MF V+ K +A Sbjct: 295 RLKILLANEIARGLLTVEEDDHHSRVIF---RGDTMFIPGQKTVNDALRPVIDKAAREIA 351 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L G+ RI ++ G Sbjct: 352 RVGGAVTVTGHTDSQPIHSAEFPSNQVLSEKRAAEVASLLTSGGIPASRI-RVVGKGDTV 410 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 411 PVADNRTKTGRAQNRRVEILVVE 433 >gi|330500929|ref|YP_004377798.1| hypothetical protein MDS_0015 [Pseudomonas mendocina NK-01] gi|328915215|gb|AEB56046.1| hypothetical protein MDS_0015 [Pseudomonas mendocina NK-01] Length = 443 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ +AD+I + G+ S++ R +F S+ + +L +I E +A Sbjct: 301 RLATFLADDIRANRV--AVEDGVDRSVVTIRGDELFSSGSASIRDDFQPLLLRIAEAVAK 358 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I GH+D P + NW LS RA Q+L +R S G + Sbjct: 359 VKGQVRITGHSDNQPIATLRFPSNWALSRARAEEVLQILAARTGQAERFSA-EGLSDTEP 417 Query: 321 KIASDP--MNSANRRIDILVE 339 ++ + NRR++I V Sbjct: 418 LASNATAEGRAKNRRVEITVL 438 >gi|311696932|gb|ADP99805.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 341 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 114/325 (35%), Gaps = 21/325 (6%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 Y D ++ L+ + M ++ + L + + E S+ Sbjct: 18 YVDALSALLMLVIFMLLVYVVSQLYLSQTLSDRDTQLARLNAQLNELSELLGLEENRSEA 77 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 + NS+ ++ ST ++ Q + + E + + Sbjct: 78 LENQLTSLQERNNSLVGQLESTREQLMRQTAMADAQSERLASMEESIDEKDDISASQQAM 137 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + + ++ S+ ++ L ++ + +++ L+ +++++++ L+ V Sbjct: 138 ILRLSNQIASLREQLRQIASALELQEQMTADKEQELEQVSRRLNTLLAERVNQLEQYQSE 197 Query: 217 F-----ETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKI--------GEVL 259 F + + I+ R + +F +S+ E L K+ ++ Sbjct: 198 FFARLRDILAGNENVRIVGDRFLLPSELLFASASAELGEEGRQELDKLAKLLLDVSAKIP 257 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 ++ I GHTD P NW LS RA + + L GV E R++ +GF Sbjct: 258 EDVDWILRIDGHTDVIPINTPRFPSNWELSTARAVAVVRYLAAQGVPERRMAA-AGFGEF 316 Query: 319 RLKI--ASDPMNSANRRIDILVEDR 341 S NRRI++ + DR Sbjct: 317 FPVAEGTSPEALQRNRRIELKLTDR 341 >gi|221638712|ref|YP_002524974.1| hypothetical protein RSKD131_0613 [Rhodobacter sphaeroides KD131] gi|221159493|gb|ACM00473.1| OmpA/MotB domain protein [Rhodobacter sphaeroides KD131] Length = 525 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 17/257 (6%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 D+ + + + + + + SL E + + Sbjct: 270 EADQRAAALTAAREALNAREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAQDAA 329 Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 ++ +S+ + N L ++ E+ + ++ + + + L+ ++ + Sbjct: 330 NKVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389 Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 R G+ + + +F+ S+ PE + + + L +I + Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449 Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD P RDNW LS RA S + + +S G R++ +GF +R D Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508 Query: 327 MNSA--NRRIDILVEDR 341 ++ NRRI++ + +R Sbjct: 509 ADARAQNRRIELKLTER 525 >gi|332557731|ref|ZP_08412053.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N] gi|332275443|gb|EGJ20758.1| hypothetical protein RSWS8N_01730 [Rhodobacter sphaeroides WS8N] Length = 525 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 17/257 (6%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 D+ + + +T + + + SL E + + Sbjct: 270 EADQRAAALAAAREALNTREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAQDAA 329 Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 ++ +S+ + N L ++ E+ + ++ + + + L+ ++ + Sbjct: 330 NKVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389 Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 R G+ + + +F+ S+ PE + + + L +I + Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449 Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD P RDNW LS RA S + + +S G R++ +GF +R D Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508 Query: 327 MNSA--NRRIDILVEDR 341 ++ NRRI++ + +R Sbjct: 509 PDARAQNRRIELKLTER 525 >gi|292492806|ref|YP_003528245.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291581401|gb|ADE15858.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 286 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 101/263 (38%), Gaps = 19/263 (7%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLK---IGSTNQKKQYQRLENNIFYLSNSQQ 139 + PP + + + E + + + + K+ QR + ++++ Sbjct: 24 LIAACAPPTKPVDLERAEAAVEQVQTDPNVTQYVPVRLDEAKEALQRAQVAWEKDESTEE 83 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 EH R + + + I L + + L ++ + +A+ Sbjct: 84 VEHLAYLAQRRAAIAEVAAAEKAAQAEIKNLGQERQQMLMEVRELEARQAREQAKMAEAR 143 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L +A+ + E T+ G ++++ D +F+ + P + L ++ L Sbjct: 144 TRELEQRLAE-----LDAEKTKRGYVLTLGD----ILFEVDRAELTPGGMQNLFRLVTFL 194 Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + I GHTD++ A N LS RA S Y+ LM +G+S +RI G+ Sbjct: 195 KEYPDREVVIEGHTDST---GSAVYNQELSQRRADSVYKFLMNNGISPERIVA-RGYGEA 250 Query: 319 RLKIASDP--MNSANRRIDILVE 339 +D NRR++I++ Sbjct: 251 YPVAPNDTAAGRQRNRRVEIVIL 273 >gi|331671759|ref|ZP_08372555.1| OmpA family membrane protein [Escherichia coli TA280] gi|331070748|gb|EGI42107.1| OmpA family membrane protein [Escherichia coli TA280] Length = 438 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L E + R MF V+ K +A Sbjct: 300 RLKILLANEIARGLLTVEEDDHHSRVIF---RGDTMFIPGQKTVNDALRPVIDKAAREIA 356 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L G+ RI ++ G Sbjct: 357 RVGGAVTVTGHTDSQPIHSAEFPSNQVLSEKRAAEVASLLTSGGIPASRI-RVVGKGDTV 415 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 416 PVADNRTKTGRAQNRRVEILVVE 438 >gi|13473358|ref|NP_104925.1| hypothetical protein mlr3926 [Mesorhizobium loti MAFF303099] gi|14024107|dbj|BAB50711.1| mlr3926 [Mesorhizobium loti MAFF303099] Length = 343 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 111/323 (34%), Gaps = 23/323 (7%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 T+L+A ++ + + I + L + + ++Q+K D Sbjct: 23 LSTLLLAIMFLLTVFVLAQFLLGREISGK-DTVLARLNSQINELTQLLALERSTAQDKDD 81 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + + ++ + + Q + + S + + + Sbjct: 82 SLANLQASLSAAEAEKSRLEQLLAQGAGAGDQANQRAAALSGELDSQRQISQQALSQVEI 141 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-------ADNIV 212 ++ K+ L+ + ++ DL ++++ L+ V +D Sbjct: 142 LNQQIAALRKQIGALEDALNVSEARDRDSNTKIADLGRRLNVALAQRVQELNRYRSDFFG 201 Query: 213 KGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLP----ETIVVLQKIGEVLAHSTEVI 266 + R I I ++ +F S + E + I E+ I Sbjct: 202 RLREILADRENIRIVGDRFVFQSEVLFPTGSEVINDAGKVEMKKLADAIIELQKEIPPEI 261 Query: 267 S----IRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GHTD P R DNW LS R+ S + L+++GV +R+ +GF + Sbjct: 262 NWVLRVDGHTDNKPLSGTGRFRDNWELSTARSTSVVKFLIENGVPANRLVA-AGFGEFQP 320 Query: 321 KIASDPMNSA--NRRIDILVEDR 341 +D + NRRI++ + +R Sbjct: 321 LDPADTDEARNKNRRIELKLTER 343 >gi|325107821|ref|YP_004268889.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305] gi|324968089|gb|ADY58867.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305] Length = 280 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIA---RDNWRLSL 289 +F S+ +L+ + ++ + + GHTD P + NW LS Sbjct: 155 LFSSGSAELRDTAKPLLRDLAAIMNDGDARGLNLLVVGHTDDQPIASARGTHPTNWHLST 214 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 +RA S L SG+SE R+ +G++ ++ + +D NRR++I V Sbjct: 215 NRANSVVLALKNSGISEHRMGA-AGYSLNQPLVPNTNDHSRQRNRRVEIFVL 265 >gi|124010248|ref|ZP_01694902.1| chemotaxis protein MotB [Microscilla marina ATCC 23134] gi|123983684|gb|EAY24121.1| chemotaxis protein MotB [Microscilla marina ATCC 23134] Length = 286 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 19/222 (8%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 Q + KN TR ++ +DL + + + L E+ ++RK++L + Sbjct: 54 QVANLKNDTTRLGKELRDLNRKYASLRESSNLTTTQLRKQLNERQKELQRKEQLLANREA 113 Query: 199 ISSTLSGLV--ADNIVKGVLFET-------TRTGILIS------IIDQRNTPMFDKSSSI 243 + L + DN++K +L + + ++ + +F + Sbjct: 114 VVQKLKAAIDRKDNLLKNLLGKVRNALKNFNPDELTVTSKNGKIYVSLAEKLLFKSGRTD 173 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK 301 + L K+ EVL + + I I GHTD+ P RDNW LS+ RA S ++L+K Sbjct: 174 VDRKGKKALGKLAEVLNKNQDIDIQIEGHTDSIPITTARFRDNWDLSVLRATSIVRILVK 233 Query: 302 SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 + + +G + + NRRI+I++ + Sbjct: 234 DYEVDPKTLTPAGRGETTPVASNKNKEGRAKNRRIEIVLSPK 275 >gi|289665938|ref|ZP_06487519.1| OmpA family membrane protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 438 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 6/152 (3%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + + + L+ L+A G+L T G S + + MF S+ + +L Sbjct: 287 EAVRPATTPALAPLLAAEQRAGLLTVQT-EGDGRSTVRLASASMFPSGSAELDADQTSLL 345 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +++ L + + GHTD P R+ +DN+ LS RA S VL +G+ + R + Sbjct: 346 ERVAAALEQVPGRVVVVGHTDDQPVRSLSFKDNFALSARRAESVGAVL-AAGLRDRRRVQ 404 Query: 312 ISGFAHHRL--KIASDP-MNSANRRIDILVED 340 SG + P + NRR++IL+ Sbjct: 405 TSGAGDSQPIALPPQLPGNRARNRRVEILLIP 436 >gi|289806378|ref|ZP_06537007.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 130 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LE 128 + Sbjct: 121 GD 122 >gi|260432828|ref|ZP_05786799.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416656|gb|EEX09915.1| OmpA/MotB domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 580 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 17/298 (5%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 +D + +E A + + + L+ ++ I++ + Sbjct: 285 EDLRAQLEAALAARSGAEAEALAQRSLVEERDSLLAVARETLAAEKEISEKAQRQTALLN 344 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 Q + + L + + + + + + + Sbjct: 345 QQIAALRGQLGALQALLDDYKERNAEAEVQIQTLGQDLNAALARAASEERRRRLLEEAER 404 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPM 236 + + A K + Q LAK+ + L ++ + + G+ I + + Sbjct: 405 IRLEAEAEKLAGQNQQLAKQ-AEDLQRYRSEFFGRLRDVLGDQEGVRIEGDRFVFSSEVL 463 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNI--ARDNWR 286 FD S++ E + K+ E+L VI + GHTD P RDNW Sbjct: 464 FDPGSAVLSDEGKREIAKVAEILRSVAAEIPPELNWVIRVDGHTDNIPVSGAGRYRDNWE 523 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS RA S + +++ G+ +R++ +GF + +D + NRRI++ + +R Sbjct: 524 LSQGRALSVVRYMVEELGIPPNRLAA-NGFGEFQPVDTADTPEARAKNRRIELKLTER 580 >gi|167572001|ref|ZP_02364875.1| hypothetical protein BoklC_19324 [Burkholderia oklahomensis C6786] Length = 439 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F+ S+ + + VL ++ + Sbjct: 287 RVAKFLEPEIAAGL-----VTVRDEADRSVIV-LRGDGLFESGSTSVIDRYMPVLIRVAD 340 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P R NW LS +RA + ++ DRI+ G Sbjct: 341 ALNKVQGSVRVSGYTDDAPVRTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRG 399 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 400 TLDPVAPNDSPANRARNRRVEITLM 424 >gi|126734135|ref|ZP_01749882.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2] gi|126717001|gb|EBA13865.1| hypothetical protein RCCS2_08249 [Roseobacter sp. CCS2] Length = 536 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 +L + D E + E + ++++ +R++R + A++I + + Sbjct: 325 NLAEEADREAQVQIETLGAQLNTALARVVSEERQRRTLEEAERIRLEAEAERLAAEAEDL 384 Query: 216 -LFETTRTGILISIIDQRNT-------------PMFDKSSSIPLPETIVVLQKIGEVLAH 261 F++T G L I++ ++ +F S+ P + I ++L Sbjct: 385 ARFKSTFFGELRQILEGQDRIRVEGDRFIFNSEVLFQPGSATLSPAGEAEIANIADILRS 444 Query: 262 S--------TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL-MKSGVSEDRIS 310 VI + GHTD P + +R DNW LS RA S + + G+ R++ Sbjct: 445 IAADIPEGIDWVIRVDGHTDNVPIGSNSRFADNWELSQARALSVVRFMSEDLGIDPRRLA 504 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +GF + + + NRRI++ + +R Sbjct: 505 A-NGFGEFQPLNPLNTAEARAQNRRIELKLTER 536 >gi|218887954|ref|YP_002437275.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758908|gb|ACL09807.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 248 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 12/199 (6%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR----KKRLQDLAKKISSTLSGLV 207 EKG + +++++ E + L E + ++ +++L + ++ + + Sbjct: 46 EKGTFSESISSVQQALGVGEGARIVRLKDENVGSVVDEVLYRRQLVEAQNRLFAEVRLFA 105 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266 + +L ++ G I++ +F+ S E +LQ + ++ + I Sbjct: 106 QSRGMSDILTGSSEDG-KITLN-MPAGVLFEPGSDTITAEGRKLLQHMYDLFVRHPDQDI 163 Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++RG TD+SP + R DNW LS RA + + L+ G++ RI+ +G A + Sbjct: 164 NVRGFTDSSPTPSGGRFRDNWDLSSSRAINVLRTLLDMGIAPHRITA-TGLADMNPLFPN 222 Query: 325 --DPMNSANRRIDILVEDR 341 + + NRR++ ++E + Sbjct: 223 TTEENRARNRRVEFVLEKQ 241 >gi|237716994|ref|ZP_04547475.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405762|ref|ZP_06082312.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229442977|gb|EEO48768.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356637|gb|EEZ05727.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 280 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N +Q S KN L ++ G + + + E+ LS++K +R+ Sbjct: 43 NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 102 Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241 + + +L I + + + N+ +L +T + + D + + +F S Sbjct: 103 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 161 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L Sbjct: 162 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 221 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +K+ V+ +I + SG + ++ S NRR +I++ + Sbjct: 222 IKNYNVNPLQI-QPSGRGEYMPVDDNETIEGRSKNRRTEIIMAPK 265 >gi|197336843|ref|YP_002157778.1| chemotaxis MotB protein [Vibrio fischeri MJ11] gi|197314095|gb|ACH63544.1| chemotaxis MotB protein [Vibrio fischeri MJ11] Length = 213 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 12/153 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +++++ + +V + V+ GI I + D N ++D S+ PE ++ + Sbjct: 64 MQELTADIQEIVEQKNLDSVVVTAVTDGIRIDL-DSEN--LYDSGSASLKPEGKALISEF 120 Query: 256 GEVLAHSTEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 E + I + GH+D P NW LS RA + L+K V + ++ Sbjct: 121 AEAMKEVDLNGRSIIVEGHSDDLPIHTKQFDSNWELSGARAIEVTKQLIKFNVDKSQLRA 180 Query: 312 ISGFAHHRLKI----ASDPMNSANRRIDILVED 340 ++ +A + + + NRR+ I ++ Sbjct: 181 VA-YADAQPRADKALPIEQQRQLNRRVVIYIKR 212 Score = 38.7 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 23/35 (65%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + Y+D +T+L+AFF+++ ++ ++ + ++ Sbjct: 16 WMMTYSDAITLLLAFFVLIVAVSQVNEGKLEELKD 50 >gi|163755499|ref|ZP_02162618.1| putative flagellar motor protein MotB [Kordia algicida OT-1] gi|161324412|gb|EDP95742.1| putative flagellar motor protein MotB [Kordia algicida OT-1] Length = 286 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 14/219 (6%) Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKST-DLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S S ++E ++ ++ + +DL ++T D+ K L K +K + Sbjct: 52 KASASARAEALEDRVSDLKKTNQDLIQNTKDMTVLTTKGAENLEKSLESMKEKDLKITRL 111 Query: 192 LQDLAKKISSTLSGLVADNIVKGV-----LFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 L KK S TL+ + + G+ + + ISI D +F S Sbjct: 112 QDALNKKDSVTLAIVSSLKKAVGIDDPDIEINVEKGVVFISIAD---KLLFKSGSYNVTD 168 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGV 304 + VVL K+ +V+ + GHTD P+ + + DNW LS+ R+ S +VL + GV Sbjct: 169 KAKVVLGKVAKVVNSKPNFECMVEGHTDNVPYNKGVLIDNWDLSVKRSTSIIRVLQELGV 228 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + ++ +G +++ + +D + NRR I+V + Sbjct: 229 NPGQLIA-AGRSYYVPLVENDTPENRATNRRTRIVVLPK 266 >gi|86359103|ref|YP_470995.1| hypothetical protein RHE_CH03512 [Rhizobium etli CFN 42] gi|86283205|gb|ABC92268.1| probable outer membrane protein [Rhizobium etli CFN 42] Length = 343 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 18/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + T + + + + +M V + ++ N + Sbjct: 5 RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLNRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E+ + +L + N Q + Sbjct: 65 LTQLLALEKGSNQDLQDAVANLQASLATAEGDRSRLQALLNAGSGGQDAAQKRIGAMTQE 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E + S S+ + L I E K+++ K L Sbjct: 125 LDEQKQVSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVA 184 Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ L+ +D + + R I I ++ +F + P+ + Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPDGQTEMA 244 Query: 254 KIG--------EVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303 K+ E+ V+ + GHTD P RDNW LS +RA S + L+ G Sbjct: 245 KLAAALLDLAKEIPPEINWVLRVDGHTDNVPLAGTGRYRDNWELSSERAISVVKFLIGQG 304 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V DR+ +GF + D ++ NRRI++ + ++ Sbjct: 305 VPADRLVA-AGFGEFQPIAPGDTPDARATNRRIELKLTEK 343 >gi|237722039|ref|ZP_04552520.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298483221|ref|ZP_07001400.1| flagellar motor protein MotB [Bacteroides sp. D22] gi|229448908|gb|EEO54699.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298270538|gb|EFI12120.1| flagellar motor protein MotB [Bacteroides sp. D22] Length = 280 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N +Q S KN L ++ G + + + E+ LS++K +R+ Sbjct: 43 NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 102 Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241 + + +L I + + + N+ +L +T + + D + + +F S Sbjct: 103 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 161 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L Sbjct: 162 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 221 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +K+ V+ +I + SG + ++ S NRR +I++ + Sbjct: 222 IKNYNVNPLQI-QPSGRGEYMPIDDNETIEGRSKNRRTEIIMAPK 265 >gi|325927851|ref|ZP_08189076.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas perforans 91-118] gi|325541841|gb|EGD13358.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas perforans 91-118] Length = 368 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G S + + MF S+ + +L+++ L + + GHTD P Sbjct: 240 LTVQTEGDGRSTVRLASASMFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQP 299 Query: 277 FRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDP-MNSANR 332 R++ +DN+ LS RA S VL +G+ + R + SG + P + NR Sbjct: 300 VRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRRVQTSGAGDSQPIALPPQLPGNRARNR 358 Query: 333 RIDILVED 340 R++IL+ Sbjct: 359 RVEILLIP 366 >gi|167908679|ref|ZP_02495884.1| hypothetical protein BpseN_41039 [Burkholderia pseudomallei NCTC 13177] Length = 395 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 179 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 238 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 239 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 296 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 297 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 356 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 357 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 393 >gi|126461734|ref|YP_001042848.1| hypothetical protein Rsph17029_0965 [Rhodobacter sphaeroides ATCC 17029] gi|126103398|gb|ABN76076.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 525 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 17/257 (6%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 D+ + + + + + + SL E + + Sbjct: 270 EADQRAAALAAAREALNAREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAQDAA 329 Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 ++ +S+ + N L ++ E+ + ++ + + + L+ ++ + Sbjct: 330 NKVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389 Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 R G+ + + +F+ S+ PE + + + L +I + Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449 Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD P RDNW LS RA S + + +S G R++ +GF +R D Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508 Query: 327 MNSA--NRRIDILVEDR 341 ++ NRRI++ + +R Sbjct: 509 PDARAQNRRIELKLTER 525 >gi|167564829|ref|ZP_02357745.1| hypothetical protein BoklE_19905 [Burkholderia oklahomensis EO147] Length = 439 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 10/145 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ L +A + I+ R +F+ S+ + + VL ++ + Sbjct: 287 RVAKFLEPEIAAGL-----VTVRDEADRSVIV-LRGDGLFESGSTSVIDRYMPVLIRVAD 340 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L + + G+TD +P NW LS +RA + ++ DRI+ G Sbjct: 341 ALNKVQGSVRVSGYTDDAPVHTARFASNWDLSRERAEAVRGLIAARLDRPDRITA-EGRG 399 Query: 317 HHRLKIASD--PMNSANRRIDILVE 339 +D + NRR++I + Sbjct: 400 TLDPVAPNDSPANRARNRRVEITLM 424 >gi|59713370|ref|YP_206145.1| flagellar motor protein MotB2 [Vibrio fischeri ES114] gi|59481618|gb|AAW87257.1| flagellar motor protein MotB2 [Vibrio fischeri ES114] Length = 213 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 12/153 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +++++ + +V + V+ GI I D + ++D S+ PE ++ + Sbjct: 64 MQELTADIQEIVEQKNLDSVVVTAVTDGIRI---DLNSENLYDSGSASLKPEGKALISEF 120 Query: 256 GEVLAHSTEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 E + I + GH+D P NW LS RA + L+K V + ++ Sbjct: 121 AEAMKEVDLNGRSIIVEGHSDDLPIHTKQFDSNWELSGARAIEVTKQLIKFNVDKSQLRA 180 Query: 312 ISGFAHHRLKI----ASDPMNSANRRIDILVED 340 ++ +A + + + NRR+ I ++ Sbjct: 181 VA-YADAQPRADKALPIEQQRQLNRRVVIYIKR 212 Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 23/35 (65%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 W + Y+D +T+L+AFF+++ ++ ++ + ++ Sbjct: 16 WMMTYSDAITLLLAFFVLIVAVSQVNEGKLEELKD 50 >gi|260172785|ref|ZP_05759197.1| putative flagellar motor protein MotB [Bacteroides sp. D2] Length = 256 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 15/219 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N+Q S KN L ++ G + + + E+ LS++K +R++ + +L Sbjct: 25 NAQMSAQIKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 84 Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247 I + + + N+ +L +T + + D + + +F S+ Sbjct: 85 QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 143 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K+ V Sbjct: 144 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 203 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +I + SG + ++ S NRR +I++ + Sbjct: 204 NPLQI-QPSGRGEYMPVDDNETAEGRSKNRRTEIIMAPK 241 >gi|167826676|ref|ZP_02458147.1| hypothetical protein Bpseu9_23575 [Burkholderia pseudomallei 9] Length = 390 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 174 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 233 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 234 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 291 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 292 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 351 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 352 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 388 >gi|323697841|ref|ZP_08109753.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457773|gb|EGB13638.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 254 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 7/225 (3%) Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 L L + Q K S KG K + N + Sbjct: 30 ADMVTLLLCFFVLLLSFAQQSEEKFRDALGSLKGAFGVKEVRAVSDEMAQFNTSSEATKE 89 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 ++ L + +I S + L + + +G R G++ + +F Sbjct: 90 MASSISHDQRLLLSVVMRIKSMVENL-DNKLKEGAGVNADRDGVV---FRTSSAALFQPF 145 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVL 299 ++ P+ +L + +VL + +RGHTD P NW LS RA A + Sbjct: 146 TAELRPDATQILDGVIKVLKDYKLNLVVRGHTDDRPIHTAKYPSNWELSAARAAVALDYI 205 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 + G E +K G+A R ++ +D N+R++ + Q Sbjct: 206 VNKGGIEINRAKAVGYADTRPEVPNDTEADRLRNQRVEFYIHMPQ 250 >gi|53721204|ref|YP_110189.1| hypothetical protein BPSS0168 [Burkholderia pseudomallei K96243] gi|76819105|ref|YP_336847.1| hypothetical protein BURPS1710b_A1690 [Burkholderia pseudomallei 1710b] gi|126443128|ref|YP_001061334.1| hypothetical protein BURPS668_A0328 [Burkholderia pseudomallei 668] gi|134280864|ref|ZP_01767574.1| OmpA domain protein [Burkholderia pseudomallei 305] gi|217423202|ref|ZP_03454704.1| OmpA family protein [Burkholderia pseudomallei 576] gi|226198699|ref|ZP_03794263.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|254263222|ref|ZP_04954087.1| OmpA domain protein [Burkholderia pseudomallei 1710a] gi|52211618|emb|CAH37613.1| OmpA family membrane protein [Burkholderia pseudomallei K96243] gi|76583578|gb|ABA53052.1| OmpA domain protein [Burkholderia pseudomallei 1710b] gi|126222619|gb|ABN86124.1| OmpA domain protein [Burkholderia pseudomallei 668] gi|134247886|gb|EBA47970.1| OmpA domain protein [Burkholderia pseudomallei 305] gi|217394110|gb|EEC34130.1| OmpA family protein [Burkholderia pseudomallei 576] gi|225929139|gb|EEH25162.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|254214224|gb|EET03609.1| OmpA domain protein [Burkholderia pseudomallei 1710a] Length = 421 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 323 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419 >gi|152990729|ref|YP_001356451.1| flagellar motor protein MotB [Nitratiruptor sp. SB155-2] gi|151422590|dbj|BAF70094.1| flagellar motor protein MotB [Nitratiruptor sp. SB155-2] Length = 234 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 5/141 (3%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ + A G+ E G + + + +F S+ P E + + Sbjct: 92 ALNEIKALLQKAGIAAEVVDHGNKVLLRVNADN-LFLPGSAYPTKEAAKYFMEFCKRFKE 150 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 S I+I G+TD P R+NW LS+ RA + ++ + G R G + Sbjct: 151 SGFRINIIGYTDNQPIHTAEFRNNWELSVYRAINILRLFVSCGYD-KRFLTAEGRGEYDP 209 Query: 321 KIASDP--MNSANRRIDILVE 339 ++ + NRR++ +V+ Sbjct: 210 IAPNNTPQGRAKNRRVEFVVD 230 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTK-KAIEQYFNPFGKN 75 + KK + + W + + D M++L+ FF++++ ++ + ++I FG Sbjct: 1 MAKKKKQECAS--IPGWLVSFGDLMSLLLTFFILLYSMSTVSVEKFYQSIRGLTEAFGGR 58 Query: 76 LMT 78 MT Sbjct: 59 SMT 61 >gi|254511081|ref|ZP_05123148.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11] gi|221534792|gb|EEE37780.1| flagellar motor protein [Rhodobacteraceae bacterium KLH11] Length = 559 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 17/257 (6%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L+ ++ I+ + Q + ++ L + + + + + Sbjct: 305 LASEQEISTEAQRQTALLNQQMSALRNQLGSLQALLDDYEDRNAAAEIQIQTLGQDLNAA 364 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + + + A + + Q+L + + L ++ + Sbjct: 365 LARAASEERRRRLLEEAERLRLEAEAEELAGQNQELTAQ-AEDLQRYRSEFFGRLRDVLG 423 Query: 220 TRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 + G+ I + +FD S++ E + K+ +L VI + Sbjct: 424 DQEGVRIEGDRFVFSSEVLFDTGSAVLSLEGREEVAKVANILRAVAAEIPEGLNWVIRVD 483 Query: 270 GHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD P RDNW LS RA S + ++ + G+ +R++ +GF + +D Sbjct: 484 GHTDNVPLAGSGRYRDNWELSQGRALSVVRYMVDALGIPPNRLAA-NGFGEFQPVNPADT 542 Query: 327 MNSA--NRRIDILVEDR 341 ++ NRRI++ + +R Sbjct: 543 PDARAQNRRIELKLTER 559 >gi|167848193|ref|ZP_02473701.1| hypothetical protein BpseB_23171 [Burkholderia pseudomallei B7210] Length = 382 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 166 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 225 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 226 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 283 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 284 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 343 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 344 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 380 >gi|167818291|ref|ZP_02449971.1| hypothetical protein Bpse9_24346 [Burkholderia pseudomallei 91] gi|167913436|ref|ZP_02500527.1| hypothetical protein Bpse112_23310 [Burkholderia pseudomallei 112] Length = 393 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 177 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 236 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 237 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 294 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 295 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 354 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 355 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 391 >gi|209550830|ref|YP_002282747.1| hypothetical protein Rleg2_3254 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536586|gb|ACI56521.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 343 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 107/340 (31%), Gaps = 18/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + + T + + + + +M V + ++ + + Sbjct: 5 RNRRRERTVDYWPGFVDALSTLLISIMFLLTVFVVGQFILSREITGRDEVLSRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E+ + + +L + N Q + Sbjct: 65 LTQLLALEKGSNQDLQDSVANLQASLASAEGDRSRLQALLNAGSGGQDAAQKRIGTMTQE 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E + S S+ + L I E K+++ K L Sbjct: 125 LDEQNQVSERALSQVELLNQQIAALRSQIAAVEAALQASEEKDRVSQTKIADLGSRLNVA 184 Query: 199 IS---STLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ L+ +D + + R I I ++ +F + PE + Sbjct: 185 LAARVQELNRYRSDFFGRLREILSDRENIRIVGDRFVFQSEVLFPSGGADLNPEGQTEMG 244 Query: 254 KIG--------EVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303 K+ E+ V+ + GHTD P RDNW LS RA S + L+ G Sbjct: 245 KLAAALLDLAKEIPPEINWVLRVDGHTDNVPLAGTGRYRDNWELSSARAISVVKFLIAQG 304 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V DR+ +GF + + ++ NRRI++ + ++ Sbjct: 305 VPADRLVA-AGFGEFQPIAPGETPDARATNRRIELKLTEK 343 >gi|213864488|ref|ZP_03386743.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 102 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 270 GHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P+ N NW LS DRA ++ + L+ G+ ++ ++ G A P Sbjct: 1 GHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPD 60 Query: 328 NSANRRIDILVEDRQG 343 ++ NRRI +LV ++Q Sbjct: 61 DAINRRISLLVLNKQA 76 >gi|218885922|ref|YP_002435243.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756876|gb|ACL07775.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 244 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 82/191 (42%), Gaps = 8/191 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D ++ K + S + +++ ++++ + + S + + V+G+ Sbjct: 54 DSVRTVFGGKDKELSTSAVRSDESSALLESVRLQRQIIEAQRNTYSEMRTYLNKTGVEGI 113 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTD- 273 + G++ I MF + P+ L+ + ++ + I+IRG TD Sbjct: 114 IGAVFDEGVITLRI--PAEVMFAPGETDLSPQAERYLKPLADLFVRKKDQSINIRGFTDD 171 Query: 274 ASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330 + P +N RDNW LS RA S + +K+G+ R++ +G + + + Sbjct: 172 SQPGQNSRFRDNWELSSLRAVSVLRYFLKAGIDSKRLTA-TGLGELDPLFPNTTEENRAR 230 Query: 331 NRRIDILVEDR 341 NRR++ ++E R Sbjct: 231 NRRVEFMLERR 241 >gi|56698003|ref|YP_168374.1| hypothetical protein SPO3171 [Ruegeria pomeroyi DSS-3] gi|56679740|gb|AAV96406.1| OmpA domain protein [Ruegeria pomeroyi DSS-3] Length = 766 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 112/308 (36%), Gaps = 19/308 (6%) Query: 52 WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 ++ + +A + L+ A + ++ R + + + ++ Sbjct: 460 LLMALESLERAQAAASDNEVLQRRLLAALDAQTEAESSAARQRSLAEERAALLAQARAAL 519 Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 + + + ++ L N +Q + + L + +N Sbjct: 520 SEEQAVSTEAQRQTALLNQQVAALRNQLGSLQALLDDYKARNASAEVQLQSLGQDLNAAL 579 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISST---LSGLVADNIVKGVLFETTRTGILIS- 227 K ++L +KRL++ A+ ++ L ++ + + G+ I Sbjct: 580 ARAASEERKRRLLEEAERKRLEEEARVLAEQAKDLERYRSEFFGRLRDVLGNQEGVRIEG 639 Query: 228 -IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDASPF- 277 + +FD S+ PE + K+ +L VI + GHTD P Sbjct: 640 DRFVFSSEVLFDPGSADLSPEGQFEIAKVARILRAIAADIPPEINWVIRVDGHTDNVPLL 699 Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 DNW LS RA S + +++S G+ DR+S +GF ++ +D + NRR Sbjct: 700 GTGKYADNWELSQGRALSVVRYMVESLGLPPDRLSA-NGFGEYQPVNPADTAEARAQNRR 758 Query: 334 IDILVEDR 341 I++ + ++ Sbjct: 759 IELKLTEK 766 >gi|88706015|ref|ZP_01103723.1| chemotaxis MotB protein [Congregibacter litoralis KT71] gi|88699729|gb|EAQ96840.1| chemotaxis MotB protein [Congregibacter litoralis KT71] Length = 216 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 28/172 (16%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232 L+K+ LA +++ Q + + L+G +A I+I D R Sbjct: 43 ELAKDLELAEAEREQAQARRQVLEEALAGPLASG--------------RITINDGRIGIS 88 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNW 285 + +F +S E +L + + L + +++ I G TD P + +DNW Sbjct: 89 GSVLFALNSDRLQDEGRELLATLADPLNVFLKENDQLLMISGFTDDLPIQAGNLSFKDNW 148 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 LS RA + + L+ +G+ DR+ + F + + + + NRR++ Sbjct: 149 ELSAQRALTVTRELVAAGLPADRVFAAA-FGDQQPVAPNRDESGRALNRRVE 199 >gi|295134908|ref|YP_003585584.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294982923|gb|ADF53388.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 281 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 12/239 (5%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 ++ K T + ++ N S + +E K ++ ++ L K + Sbjct: 27 LEAKQKETQDQLNTATVKLNACLESKDEMTERIKVLNNTNAALLNNVGDLATLSKKEAQN 86 Query: 171 ENYFLPPLSKEKILAMKRKKRL---QDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 L + ++ + + + + + ++L G + + + + + +S Sbjct: 87 LERSLESIKEKDLAIKSMRDAINKKDSVTLALVTSLKGAIGNMNDDDIEINVEKGVVYVS 146 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNW 285 I D +FD + VL K+ V+ + + + GHTD ++ +DNW Sbjct: 147 ISD---KLLFDSGRYNVTNQAREVLGKVATVIKNKPDIEFMVEGHTDDKSISTSMFQDNW 203 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS+ RA S ++L GV R++ +G +++ ++ + NRR I+V + Sbjct: 204 DLSVKRATSVVRILQDEFGVDPKRMTA-AGRSYYMPVASNATAEGRAKNRRTRIVVLPK 261 >gi|78061841|ref|YP_371749.1| hypothetical protein Bcep18194_B0991 [Burkholderia sp. 383] gi|77969726|gb|ABB11105.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 434 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 6/137 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L L+ D I G + + S + R MF + ++ KI +A Sbjct: 297 LKQLLKDEIAAGTV--SVDEDARHSAVTFRGDAMFKPGGASVQASMNPLILKIAGEVAKV 354 Query: 263 TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++I G+TD P R+ N LS +RA Q+L +GV R+ + G Sbjct: 355 PGKVTIIGYTDNVPIRSRHFASNQVLSEERAIQVMQMLQAAGVPASRLEAV-GKGDTDPV 413 Query: 322 --IASDPMNSANRRIDI 336 + + NRR++I Sbjct: 414 GDNRTAQGRAQNRRVEI 430 >gi|126457554|ref|YP_001074280.1| hypothetical protein BURPS1106A_A0237 [Burkholderia pseudomallei 1106a] gi|242313025|ref|ZP_04812042.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|254195472|ref|ZP_04901900.1| OmpA domain protein [Burkholderia pseudomallei S13] gi|126231322|gb|ABN94735.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|169652219|gb|EDS84912.1| OmpA domain protein [Burkholderia pseudomallei S13] gi|242136264|gb|EES22667.1| OmpA family protein [Burkholderia pseudomallei 1106b] Length = 421 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 323 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419 >gi|187919311|ref|YP_001888342.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans PsJN] gi|187717749|gb|ACD18972.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 222 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 8/161 (4%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + + L + E+ + + D +KK +L + DN + + G+ I Sbjct: 51 LQLAKTRELEIKALERHVVTEAAPATPDASKKQLLSLLAPLRDN--RQITISNAAQGVEI 108 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DN 284 +I +F+ + LPE+ VL +I VL + I + GHTD P N Sbjct: 109 AI---NAKILFNSGDARLLPESSDVLNQIAGVLRERSKNNILVEGHTDNVPISTAKYESN 165 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 W LS RA + + G+ R++ I G A + I D Sbjct: 166 WELSSARAGAVVRFFADKGIEAHRMAAI-GRADNFPLIIGD 205 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 D+ G W I Y+D +T LM FL ++++ + Sbjct: 21 DEGEEESGRWLISYSDLITTLMVLFLALYVLQLAKTRELEIKA 63 >gi|237509611|ref|ZP_04522326.1| type VI secretion system OmpA/MotB family protein [Burkholderia pseudomallei MSHR346] gi|235001816|gb|EEP51240.1| type VI secretion system OmpA/MotB family protein [Burkholderia pseudomallei MSHR346] Length = 421 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 323 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419 >gi|115358234|ref|YP_775372.1| hypothetical protein Bamb_3484 [Burkholderia ambifaria AMMD] gi|115283522|gb|ABI89038.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 432 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 12/161 (7%) Query: 185 AMKRKKRLQDLAKKI------SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + +K++ D+A+ L L+ D I G + + S + R MF Sbjct: 271 SADVQKQIADIARMTPPPAPPQLHLKQLLQDEIAAGTV--SVDEDARHSAVTFRGDAMFK 328 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQ 297 + ++ KI +A ++I G+TD P R+ N LS +RA Q Sbjct: 329 PGGASVQASMNPLIAKIATEIAKVPGKVTIIGYTDKVPIRSRHFASNQVLSEERATQVMQ 388 Query: 298 VLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 +L +GV +R+ + G + + NRR++I Sbjct: 389 MLQAAGVPANRLEAV-GKGDAHPVGDNRTAQGRAQNRRVEI 428 >gi|167741105|ref|ZP_02413879.1| hypothetical protein Bpse14_23766 [Burkholderia pseudomallei 14] Length = 394 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 178 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 237 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 238 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 295 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 296 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 355 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 356 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 392 >gi|160884848|ref|ZP_02065851.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483] gi|156109883|gb|EDO11628.1| hypothetical protein BACOVA_02838 [Bacteroides ovatus ATCC 8483] Length = 280 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 15/219 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +Q S KN L ++ G + + + E+ LS++K +R++ + +L Sbjct: 49 GNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 108 Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247 I + + + N+ +L +T + + D + + +F S+ Sbjct: 109 QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 167 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K+ V Sbjct: 168 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 227 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +I + SG + ++ S NRR +I++ + Sbjct: 228 NPLQI-QPSGRGEYMPIDDNETIEGRSKNRRTEIIMAPK 265 >gi|319781002|ref|YP_004140478.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166890|gb|ADV10428.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 343 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 107/340 (31%), Gaps = 18/340 (5%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + D + + + + +M V + + + + Sbjct: 5 RGRRTDRRIDYWPGFVDALSTLLLAIMFLLTVFVLAQFLLGREISGKDTALSRLNSQINE 64 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ + E++ + + +L + Q N + Sbjct: 65 LTQLLALERSTAQDKDDSLANLQASLSAAQAEKSRLERLLAQGAGAGDAANQRAAALGGE 124 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQDL 195 + S S+ + L K I E+ +++ K +RL Sbjct: 125 LDSQRQISQQALSQVEILNQQIAALRKQIGALEDALNVSEIRDRDSNTKIADLGRRLNVA 184 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLP----ETI 249 + L+ +D + R I I ++ +F S + E Sbjct: 185 LAQRVQELNRYRSDFFGRLREILADRENIRIVGDRFVFQSEVLFPTGSEVINDAGKVEMK 244 Query: 250 VVLQKIGEVLAHSTEVIS----IRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSG 303 + I E+ I+ + GHTD P RDNW LS R+ S + L+++G Sbjct: 245 KLADAIIELQKEIPPEINWVLRVDGHTDNKPLSGTGRYRDNWELSTARSTSVVKFLIENG 304 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V +R+ +GF + +D + NRRI++ + +R Sbjct: 305 VPANRLVA-AGFGEFQPLDPADTEEARNKNRRIELKLTER 343 >gi|86132280|ref|ZP_01050875.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85817199|gb|EAQ38382.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 287 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 13/208 (6%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + +K + S DL + L K +K + L KK S T Sbjct: 63 EERVAEMRKDKNNLIQSSKDLTVLTKQGAVNLEKSLESLKEKDLKINRLQDALTKKDSVT 122 Query: 203 LSGLVADN-----IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 L+ + + + + + + IS+ D +F S +L K+ Sbjct: 123 LALVTSLKREVGINDQDIEINVEKGVVFISLSD---KVLFKSGSYQITSRAEEILGKVAT 179 Query: 258 VLAHSTE-VISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 V+ + + GHTD P+ R + DNW LS RA + + L++ G + ++ +G Sbjct: 180 VINSKPDFEALVEGHTDNVPYNRGVLIDNWDLSAKRATAIVRKLVELGANPAQLIA-AGR 238 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDR 341 + + +D S NRR I V + Sbjct: 239 SEFVPLVPNDTPENKSTNRRTKIYVLPK 266 >gi|224582121|ref|YP_002635919.1| hypothetical protein SPC_0290 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466648|gb|ACN44478.1| hypothetical protein SPC_0290 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 434 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|170697801|ref|ZP_02888887.1| type VI secretion system OmpA/MotB family protein [Burkholderia ambifaria IOP40-10] gi|170137303|gb|EDT05545.1| type VI secretion system OmpA/MotB family protein [Burkholderia ambifaria IOP40-10] Length = 433 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 10/160 (6%) Query: 185 AMKRKKRLQDLAKKI------SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + +K++ D+A+ L L+ I G + + S + R MF Sbjct: 272 SADVQKQIADIARMTPPPAPPQLHLKQLLQGEIAAGTV--SVDEDARHSAVTFRGDAMFK 329 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQ 297 + ++ KI +A ++I G+TD P R+ N LS +RA Q Sbjct: 330 PGGASVQASMNPLVSKIAAEIAKVPGKVTIIGYTDNVPIRSRHFASNQVLSEERATLVMQ 389 Query: 298 VLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 +L +GV +R+ + G A + + NRR++I Sbjct: 390 MLQAAGVPANRLEAVGKGDADPVGDNRTAQGRAQNRRVEI 429 >gi|194443139|ref|YP_002039516.1| hypothetical protein SNSL254_A0308 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401802|gb|ACF62024.1| SciP protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 434 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 ++I GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTITGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|213584595|ref|ZP_03366421.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 161 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KNQ + +++K++ GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +YF +T I + ++P + + N +LK + R Sbjct: 61 EYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120 Query: 127 LENNIFYLSNSQ 138 + + S+ + Sbjct: 121 GDLDQLIESDPK 132 Score = 41.8 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + +++ + RL L + + ++ + + + G+ I Sbjct: 92 TQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRI 151 Query: 227 SIIDQRNTPM 236 IID +N PM Sbjct: 152 QIIDSQNRPM 161 >gi|320536711|ref|ZP_08036721.1| OmpA family protein [Treponema phagedenis F0421] gi|320146448|gb|EFW38054.1| OmpA family protein [Treponema phagedenis F0421] Length = 412 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 12/167 (7%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + K+L A ++ L+ + + ++ T GI ISI F Sbjct: 255 YEGTASAEITETKKLDKAA--VAEDLTQKIEELGIENTTISQTDEGITISI----ENIQF 308 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 + S+ L LQKIG +L + + I GHT R A + +LS +RA S Sbjct: 309 EADSARLLSSEKEKLQKIGRLLQGFPDKELLISGHT---ALRGTAAERQKLSEERADSVA 365 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 + L + G+ + + GF R ++ + NRR++I + ++ Sbjct: 366 RYLEEIGIRDTQHLYTRGFGARRPLAPNTNEENRARNRRVEITILEK 412 >gi|170741264|ref|YP_001769919.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168195538|gb|ACA17485.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 337 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 92/249 (36%), Gaps = 27/249 (10%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE------KSINKEEN 172 + + +R + Q + ++EKG + +E ++ ++ Sbjct: 90 QESETERRRLQDALSADQGAQGKASDLGRQLEAEKGATNRALSQVELLNQQIAAMRQQLA 149 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTG 223 L+ + + + R+ DL +++ L+ V + ++ +L + Sbjct: 150 ALEDALAASETRDRESQARIADLGSRLNVALAQRVQELARYRSDFFGRLRQILGNRSDIR 209 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--------EVLAHSTEVISIRGHTDAS 275 I+ ++ +F + PE L +I ++ V+ + GHTDA Sbjct: 210 IVGDRFVLQSEVLFAAGQATLRPEAGAELDRIAVAIIELGRQIPPDIPWVLRVDGHTDAR 269 Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332 P + NW LS R+ + Q ++ G+ R+ F + ++ + NR Sbjct: 270 PISSATFPSNWALSAARSIAVVQYMVGRGIPPQRLLA-GAFGEFQPLDTGTTEEAYARNR 328 Query: 333 RIDILVEDR 341 RI++ + +R Sbjct: 329 RIELKLTER 337 >gi|323697552|ref|ZP_08109464.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457484|gb|EGB13349.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 248 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 81/207 (39%), Gaps = 18/207 (8%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KI 199 E + + ++ + + +E L + + ++K ++ + Sbjct: 50 EKFSETFSSVTKALQGKMDKISTSRITREEAGVLLDQALMRRQIIESQRKVFAEVKTLQT 109 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV- 258 + GLV+ N GV+ + + MF P+ ++ + + Sbjct: 110 KKGVEGLVSANFEDGVIT------LRV-----PGDVMFQSGQVELTPKGAQLVADLKDFF 158 Query: 259 LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + H + I I G+TD +R DNW +S RA + + L+K G+ R++ +G A Sbjct: 159 IKHKDQNIKIVGYTDNVRPGGNSRFKDNWEISAMRAVNVLRELLKLGLESTRLTA-TGLA 217 Query: 317 HHRLKIAS--DPMNSANRRIDILVEDR 341 + + + + NRR++ ++E R Sbjct: 218 YLNPLYPNTSEEYRAKNRRVEFILEKR 244 >gi|290475121|ref|YP_003468005.1| hypothetical protein XBJ1_2106 [Xenorhabdus bovienii SS-2004] gi|289174438|emb|CBJ81232.1| Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) [Xenorhabdus bovienii SS-2004] Length = 403 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNW 285 SI+ R +F+ S+ + V++ I E + + I + G+TD P + N+ Sbjct: 281 SIVTLRGDGLFNTGSTQIKNNELPVIKHIAETINNIKGEILVIGYTDDVPINSSGFSSNY 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LSL RA S + K +R+ + G +D + NRR++I++ Sbjct: 341 ALSLARAKSVKREFEKYLDHPERV-RTEGRGESDPLFPNDTPSHRAKNRRVEIVLL 395 >gi|198245916|ref|YP_002214234.1| hypothetical protein SeD_A0303 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940432|gb|ACH77765.1| SciP protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621978|gb|EGE28323.1| SciP protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 434 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|53715977|ref|YP_106445.1| hypothetical protein BMAA1914 [Burkholderia mallei ATCC 23344] gi|52421947|gb|AAU45517.1| OmpA domain protein [Burkholderia mallei ATCC 23344] Length = 426 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 210 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 269 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 270 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 327 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 328 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 387 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 388 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 424 >gi|254189549|ref|ZP_04896059.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157937227|gb|EDO92897.1| OmpA domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 421 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 205 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 323 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419 >gi|78047693|ref|YP_363868.1| OmpA family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036123|emb|CAJ23814.1| OmpA family membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 438 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G S + + MF S+ + +L+++ L + + GHTD P Sbjct: 310 LTVQTEGDGRSTVRLASASMFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQP 369 Query: 277 FRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDP-MNSANR 332 R++ +DN+ LS RA S VL +G+ + R + SG + P + NR Sbjct: 370 VRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRRVQTSGAGDSQPIALPPQLPGNRARNR 428 Query: 333 RIDILVED 340 R++IL+ Sbjct: 429 RVEILLIP 436 >gi|27378711|ref|NP_770240.1| hypothetical protein blr3600 [Bradyrhizobium japonicum USDA 110] gi|27351860|dbj|BAC48865.1| blr3600 [Bradyrhizobium japonicum USDA 110] Length = 508 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 7/148 (4%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + L +N + + T + I+I + D +F + L + ++ Sbjct: 365 QLQRIRNALAKENTACAMTADQTPSFIVIRVCDL---ALFASGQATILDGFKPIALRVAA 421 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L I + GHTD+SP R + N+ LS++RA + L R+ + G Sbjct: 422 TLDKEPGRIRVVGHTDSSPIRTVRFPTNFELSVERAKAVAAALKPGLTDGSRVD-VEGKG 480 Query: 317 HHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ + NRR++I +E + Sbjct: 481 ADAPIASNTTPEGRAKNRRVEIFIERSE 508 >gi|67642544|ref|ZP_00441299.1| OmpA domain protein [Burkholderia mallei GB8 horse 4] gi|121597981|ref|YP_990526.1| hypothetical protein BMASAVP1_0927 [Burkholderia mallei SAVP1] gi|124381968|ref|YP_001025016.1| hypothetical protein BMA10229_1214 [Burkholderia mallei NCTC 10229] gi|126447715|ref|YP_001079360.1| hypothetical protein BMA10247_A2189 [Burkholderia mallei NCTC 10247] gi|166999157|ref|ZP_02265003.1| OmpA family protein [Burkholderia mallei PRL-20] gi|254176494|ref|ZP_04883152.1| OmpA domain protein [Burkholderia mallei ATCC 10399] gi|254203448|ref|ZP_04909809.1| OmpA family protein [Burkholderia mallei FMH] gi|254205327|ref|ZP_04911680.1| OmpA family protein [Burkholderia mallei JHU] gi|254299607|ref|ZP_04967056.1| OmpA domain protein [Burkholderia pseudomallei 406e] gi|254356134|ref|ZP_04972411.1| OmpA family protein [Burkholderia mallei 2002721280] gi|121225779|gb|ABM49310.1| OmpA domain protein [Burkholderia mallei SAVP1] gi|126240569|gb|ABO03681.1| OmpA domain protein [Burkholderia mallei NCTC 10247] gi|147745687|gb|EDK52766.1| OmpA family protein [Burkholderia mallei FMH] gi|147754913|gb|EDK61977.1| OmpA family protein [Burkholderia mallei JHU] gi|148025117|gb|EDK83286.1| OmpA family protein [Burkholderia mallei 2002721280] gi|157809319|gb|EDO86489.1| OmpA domain protein [Burkholderia pseudomallei 406e] gi|160697536|gb|EDP87506.1| OmpA domain protein [Burkholderia mallei ATCC 10399] gi|238523712|gb|EEP87149.1| OmpA domain protein [Burkholderia mallei GB8 horse 4] gi|243064713|gb|EES46899.1| OmpA family protein [Burkholderia mallei PRL-20] gi|261826580|gb|ABM99761.2| OmpA domain protein [Burkholderia mallei NCTC 10229] Length = 421 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 205 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 323 VNPAMGPLIRKIAAEIARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 383 GVPASRLEALGKGGAEPIGDNRTPQGRALNRRVEITV 419 >gi|238797993|ref|ZP_04641483.1| Type VI secretion system OmpA/MotB family protein [Yersinia mollaretii ATCC 43969] gi|238718198|gb|EEQ10024.1| Type VI secretion system OmpA/MotB family protein [Yersinia mollaretii ATCC 43969] Length = 446 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Query: 202 TLSGLVADNIVKGVL--FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ L+ D I K ++ ETT +I R MF S PE + V++++ + + Sbjct: 308 RLTVLLKDEIAKKLVSVDETTSRSKVI----FRGDTMFQVGSDKVRPEIVNVIERVAQEV 363 Query: 260 AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I GHTD+ P N LS RA + + + K+G+ +I + G Sbjct: 364 HRVKGAVLIVGHTDSMPINKPGYPNNQVLSEKRAANVARFMEKAGIPTGKI-RFEGKGDT 422 Query: 319 RLKIASD--PMNSANRRIDILV 338 + +D S NRR++I V Sbjct: 423 QPVSRNDDAAGRSQNRRVEIFV 444 >gi|16759268|ref|NP_454885.1| hypothetical protein STY0305 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142957|ref|NP_806299.1| hypothetical protein t2581 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052080|ref|ZP_03344958.1| hypothetical protein Salmoneentericaenterica_03522 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428430|ref|ZP_03361180.1| hypothetical protein SentesTyphi_24568 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289805848|ref|ZP_06536477.1| hypothetical protein Salmonellaentericaenterica_15952 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25513281|pir||AI0536 probable membrane protein STY0305 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501559|emb|CAD08737.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138589|gb|AAO70159.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|329805048|gb|AEC05360.1| putative membrane protein [Salmonella enterica] Length = 433 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 295 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 351 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 352 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 410 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 411 PVADNGSKAGRAKNRRVEILVVE 433 >gi|188575822|ref|YP_001912751.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520274|gb|ACD58219.1| OmpA family membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 438 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ L+A G+L T G S + + MF S+ + +L+++ L Sbjct: 296 ALAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQ 354 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GHTD P R++ +DN+ LS RA S VL +G+ + R + SG + Sbjct: 355 VPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQP 413 Query: 321 --KIASDP-MNSANRRIDILVED 340 P + NRR++IL+ Sbjct: 414 IALPPQLPGNRARNRRVEILLIP 436 >gi|51246518|ref|YP_066402.1| flagellar motor protein (MotB) [Desulfotalea psychrophila LSv54] gi|50877555|emb|CAG37395.1| related to flagellar motor protein (MotB) [Desulfotalea psychrophila LSv54] Length = 249 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 5/145 (3%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 KKI + + + E I I+ + +F + S P + ++L+ I Sbjct: 94 KKIHEKIKNKLK-ALRINSEVELINKDKDIIILRMDDKVLFARGQSEISPRSYMLLRNIA 152 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-DRISKISGF 315 +++ + I GH+D P NW LS RA SA + + + DR+S I G+ Sbjct: 153 DIIRPLPVNVRIEGHSDDIPLGINNIANWNLSTSRAVSALRFFYRGNLISLDRLSAI-GY 211 Query: 316 AHHRLKIAS--DPMNSANRRIDILV 338 + + + NRR+D ++ Sbjct: 212 GDMHPIAPNTTEENRAKNRRVDFVL 236 >gi|166712215|ref|ZP_02243422.1| hypothetical protein Xoryp_12360 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 438 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ L+A G+L T G S + + MF S+ + +L+++ L Sbjct: 297 LAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQV 355 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL- 320 + + GHTD P R++ +DN+ LS RA S VL +G+ + R + SG + Sbjct: 356 PGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQPI 414 Query: 321 -KIASDP-MNSANRRIDILVED 340 P + NRR++IL+ Sbjct: 415 ALPPQLPGNRARNRRVEILLIP 436 >gi|289678953|ref|ZP_06499843.1| flagellar motor protein MotD [Pseudomonas syringae pv. syringae FF5] Length = 234 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 8/166 (4%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ E + + LQ +A+ + +++K + Sbjct: 75 SVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAF-----GDLIKSDQMTVRGNELW 129 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 I I + ++ +F ++P + +++K+ ++ I + G TD P N Sbjct: 130 IEI-ELNSSMLFGSGDAMPSDKAFTIIEKVAGIVKRFDNPIHVEGFTDDQPISTAQFPTN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 W LS R+ S ++L GV+ R++ + G+ + + + Sbjct: 189 WELSSARSASIVRMLAMDGVNPARLASV-GYGEFQPIVPNTSTAGR 233 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + W + YADF+T+L AFF+VM+ I++ ++ K + Q + Sbjct: 3 RRRQVEEHENH--ERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTE 60 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 K I + P + + E Q R S+ Sbjct: 61 RTMKPIPIGEQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQ 120 Query: 138 Q 138 Sbjct: 121 M 121 >gi|320538203|ref|ZP_08038098.1| OmpA family protein [Treponema phagedenis F0421] gi|1399286|gb|AAB03251.1| MotB [Treponema phagedenis] gi|320145020|gb|EFW36741.1| OmpA family protein [Treponema phagedenis F0421] Length = 238 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 11/165 (6%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 I AM ++ + L + +S + + + G++IS+ F + SS Sbjct: 74 INAMPSLEKGKKLGTALKKAVSLFAPEIKTNKIAVTSDERGLVISLAAD---AFFHRDSS 130 Query: 243 IPL-PETIVVLQKIGEVLAHST---EVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQ 297 ET L I L+ + GHT S + D+W+LS RA + Sbjct: 131 DLDIEETRESLLHIARFLSDKELEGRRFRVEGHTSTSEVAASKEIDDWQLSSQRAINVLH 190 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L G E R ++G+A R K ++D + NRR+DI++ D Sbjct: 191 YLTDFGAEESRF-SVAGYADTRPKASNDTAEGRAYNRRVDIIILD 234 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF--NPFGK 74 + +K ++ W Y+D +T+++ FF++++ + D +++ +P G Sbjct: 1 MARKKKQAAGASSG--WLTTYSDMVTLMLCFFVMVYSPSDVDITILQSMAASISGDPTGG 58 Query: 75 NLMTASKGIFDEQN 88 + + D N Sbjct: 59 GQSVSIGRLEDLGN 72 >gi|16763665|ref|NP_459280.1| hypothetical protein STM0282 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414595|ref|YP_151670.1| hypothetical protein SPA2482 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168238628|ref|ZP_02663686.1| SciP protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261319|ref|ZP_02683292.1| SciP protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465340|ref|ZP_02699222.1| SciP protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819144|ref|ZP_02831144.1| SciP protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194736479|ref|YP_002113300.1| hypothetical protein SeSA_A0314 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262114|ref|ZP_03162188.1| SciP protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363525|ref|YP_002143162.1| hypothetical protein SSPA2317 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|238913699|ref|ZP_04657536.1| hypothetical protein SentesTe_21562 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|15130931|emb|CAC48213.1| SciP protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418782|gb|AAL19239.1| putative outer membrane protein, OmpA family [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128852|gb|AAV78358.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194711981|gb|ACF91202.1| SciP protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631766|gb|EDX50286.1| SciP protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095002|emb|CAR60547.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240369|gb|EDY22989.1| SciP protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288542|gb|EDY27919.1| SciP protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205344023|gb|EDZ30787.1| SciP protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350071|gb|EDZ36702.1| SciP protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261245507|emb|CBG23297.1| putative type VI system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991971|gb|ACY86856.1| hypothetical protein STM14_0330 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156902|emb|CBW16378.1| putative membrane protein (SPI-6 associated) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911246|dbj|BAJ35220.1| hypothetical protein STMDT12_C02770 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084532|emb|CBY94324.1| Uncharacterized 24.6 kDa protein in ccpA 3'region ORF2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224938|gb|EFX49999.1| Outer membrane protein ImpK/VasF, OmpA/MotB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128597|gb|ADX16027.1| Putative outer membrane protein, OmpA family [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987228|gb|AEF06211.1| hypothetical protein STMUK_0285 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 434 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|168232215|ref|ZP_02657273.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240017|ref|ZP_02664949.1| SciP protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448829|ref|YP_002044265.1| hypothetical protein SeHA_C0320 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468900|ref|ZP_03074884.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194407133|gb|ACF67352.1| SciP protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455264|gb|EDX44103.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333484|gb|EDZ20248.1| SciP protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339891|gb|EDZ26655.1| SciP protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 434 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|146300670|ref|YP_001195261.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155088|gb|ABQ05942.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 277 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 16/216 (7%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LA 196 ++ + + +DL S+ + + L + + RLQD L Sbjct: 49 EEKAGLAATAESYKQHNQDLINSSKDLTVLTTKGAENLEKSLESLKEKDLKISRLQDALT 108 Query: 197 KKISSTLSGLVADNIVKGV-----LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 KK S TL+ + + G+ + + ISI D +F S + V Sbjct: 109 KKDSVTLALVTSLKGAVGINDPDIEVNVEKGVVFISIAD---KLLFKSGSYDVSDKAKSV 165 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSED 307 L K+ +V+ + + GHTD P+++ DNW LS+ R+ S +VL GV+ Sbjct: 166 LAKVAKVVNDKPDFECMVEGHTDDVPYKSNGVILDNWDLSVKRSTSIVRVLTNDLGVNPA 225 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 ++ +G + + +A+D + NRR I+V + Sbjct: 226 KLIA-AGRSSYVPLVANDSAENKARNRRTRIVVMPK 260 >gi|86157810|ref|YP_464595.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774321|gb|ABC81158.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 259 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 8/169 (4%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNT 234 P + + + ++ L K+I + V + V V + + + Sbjct: 79 GPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAATE-- 136 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292 FD + P+ + +L I L + + GHTD +P R NW LS RA Sbjct: 137 -FFDPGQAALRPQALAMLDAIAAELVPLARPLRVEGHTDETPVGGGGRWISNWELSAARA 195 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 + L ++ + G + NRR+++++E Sbjct: 196 ATVVGYLEQAHAARPAGLSAVGLGSAHPLSTDATPEAHERNRRVELVLE 244 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADFMT+L AFF+VM+ ++ D+ + T G + P Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDNKRIVQATESIRWAMHFSGTGGTGALPLFDGPPS 75 Query: 93 SSQNK 97 Sbjct: 76 EGGGP 80 >gi|311106780|ref|YP_003979633.1| OmpA family protein 1 [Achromobacter xylosoxidans A8] gi|310761469|gb|ADP16918.1| OmpA family protein 1 [Achromobacter xylosoxidans A8] Length = 183 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 11/164 (6%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + K + +A + ++ L A+ + + ++++ N +F + Sbjct: 20 VTKKTYDKEAQMAAEYAALNQKLTAELSGDRAQITQLQNELKVTMV---NEILFPEGGWR 76 Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF----RNIARDNWRLSLDRAYSAYQV 298 P+ L KI L++ + ++G+TD P R+ N LS RA + + Sbjct: 77 LSPKGEQTLAKIAPTLSNLPGQQVVVQGYTDNEPIGPELRSQFPSNLELSSARADNVARF 136 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L GV + IS GF R ++ + NRR++I++ Sbjct: 137 LTSKGVPPNSISA-QGFGEARPVASNSTPQGKAQNRRVEIVITS 179 >gi|228910334|ref|ZP_04074150.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] gi|229032155|ref|ZP_04188131.1| OmpA/MotB domain protein [Bacillus cereus AH1271] gi|228729161|gb|EEL80161.1| OmpA/MotB domain protein [Bacillus cereus AH1271] gi|228849286|gb|EEM94124.1| OmpA/MotB domain protein [Bacillus thuringiensis IBL 200] Length = 123 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 +FD + E++ + +++ +L + S I++ GHTD P N NW LS Sbjct: 6 ENILFDSGKADVKLESLGIAKEMSSLLVSASPREITVSGHTDNVPIANAQFASNWELSTQ 65 Query: 291 RAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + QVL+++ + ++ S I G+ +R +D + NRR+++ + Sbjct: 66 RAVNFMQVLLQNKELQPEKFSAI-GYGEYRSIAPNDTQEGKAKNRRVEVFILP 117 >gi|77462842|ref|YP_352346.1| hypothetical protein RSP_2289 [Rhodobacter sphaeroides 2.4.1] gi|77387260|gb|ABA78445.1| Outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides 2.4.1] Length = 525 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 17/257 (6%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 D+ + + + + + + SL E + + Sbjct: 270 EADQRAAALAAAREALNAREGEGAEAARRVALLNEQVAALRAQLGSLQGLLEAAEAHDSA 329 Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 +++ +S+ + N L ++ E+ + ++ + + + L+ ++ + Sbjct: 330 NNVQLQSLGTQLNSALAQVASEQKRRAELEEAERLRLEAENKDLARFRSEFFGQLRQVLA 389 Query: 220 TRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 R G+ + + +F+ S+ PE + + + L +I + Sbjct: 390 GREGVRVVGDRFVFSSEVLFEPGSAELAPEGRAQISGVVQTLNEIRTQIPEGIDWIIRVD 449 Query: 270 GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD P RDNW LS RA S + + +S G R++ +GF +R D Sbjct: 450 GHTDNVPLSGFGAFRDNWELSSARALSVVRFMQQSLGFPPSRLAA-TGFGEYRPVTPGDS 508 Query: 327 MNSA--NRRIDILVEDR 341 ++ NRRI++ + +R Sbjct: 509 PDARAQNRRIELKLTER 525 >gi|282858415|ref|ZP_06267595.1| OmpA family protein [Prevotella bivia JCVIHMP010] gi|282588863|gb|EFB93988.1| OmpA family protein [Prevotella bivia JCVIHMP010] Length = 287 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q + NN S Q + S S + + + + Sbjct: 41 QSAKETIAANNARIKSLEDQLTQARESAAALQGSLDKSLTSANSNNINISKLVDQINESN 100 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + ++ K + L + + L+ ++ +K V + + + IS+ D ++ Sbjct: 101 QYIRHLVEVKSKSDSLNMALQNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKS 157 Query: 240 SSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA------RDNWRLSLDRA 292 S L KI ++++ + + I G+TD P R+NW LS RA Sbjct: 158 GSYEINDRAEQTLSKIAKIISDYNDYDVLIEGNTDNVPINTANKMMTNIRNNWDLSALRA 217 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + L + GV+ RI+ G + +A++ NRR I++ + Sbjct: 218 TSVAKYLQEHFGVNPKRITA-GGRGEYNPLVANNTELGRQRNRRTQIIITPK 268 >gi|319955259|ref|YP_004166526.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319423919|gb|ADV51028.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 283 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 93/252 (36%), Gaps = 10/252 (3%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + DL T++ ++ N + + ++ Q + N+ + Sbjct: 20 SQKKYADLEAKSKETQDLLNSATVKLNTCLEEKASASSRLKTLEDQNAFLKSNNQELINN 79 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 G S+ +++ K + L +R + + +L G++ + Sbjct: 80 MGNLTTLSSKGAQNLEKSLESLQEKDLTIRKLNDAITRR-DSVNLSLVQSLKGVLGNLDD 138 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + + + + +SI D +F S VL K+ +V+ + + + GH Sbjct: 139 EDIQISVEKGVVFVSISD---KLLFSSGSYNVTNRAKEVLGKVAKVVNNKPDFDFMVEGH 195 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS 329 TD P+ DNW LS RA + ++L V R++ + + + +D + Sbjct: 196 TDDVPYNGGILLDNWDLSAKRATAIVRILQNDYNVDPKRMTAAA-RSSYVPVSTTD--KA 252 Query: 330 ANRRIDILVEDR 341 NRR I+V + Sbjct: 253 KNRRTRIVVLPK 264 >gi|114321978|ref|YP_743661.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228372|gb|ABI58171.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 362 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 21/257 (8%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 + +++ + + + + E+ + + Sbjct: 107 EAQQAALEDSLADQEEALDEAAARRAELRDRLAGREADLARERALTDEQAARIDRLHRQI 166 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-----GVLFET 219 ++ ++ L + A ++ ++DL ++++ L+ V + G L E Sbjct: 167 IALREQLTALSEALDLSEATAAAQRAEIRDLGQRLNLALAERVQELARYRSEFFGRLREV 226 Query: 220 TRTGILISIIDQ----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------S 267 I I ++ +F +S+ E L+ + L I Sbjct: 227 LGDHPDIRIEGDRFLFQSELLFATASADLGGEGREQLEGLATTLHELRGRIPDDLDWVLQ 286 Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + GHTD P R NW LS RA + + LM G+ +R++ +GFA + D Sbjct: 287 VEGHTDRRPIRTAEFPSNWELSTARAQTIVRYLMDQGIPPERLAA-AGFAEYHPVDDRDT 345 Query: 327 MN--SANRRIDILVEDR 341 + NRRI++ + +R Sbjct: 346 PEAWARNRRIELRLTNR 362 >gi|167993292|ref|ZP_02574387.1| SciP protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328610|gb|EDZ15374.1| SciP protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 434 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|220917668|ref|YP_002492972.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955522|gb|ACL65906.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 259 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 9/170 (5%) Query: 176 PPLSKEKILAMKRKKR-LQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRN 233 + E +M+++ R ++ L K+I + V + V V + + + Sbjct: 78 GGPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAATE- 136 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDR 291 FD + P+ + +L I + + + GHTD +P + R NW LS R Sbjct: 137 --FFDPGQAALRPQALALLDAIAVEIVPLERPLRVEGHTDETPVGSGGRWMSNWELSATR 194 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 A + L ++ + + G + NRR+++++E Sbjct: 195 AATVVGYLEQAHAARPALLAAVGLGSAHPLSTDATPEAHERNRRVELVLE 244 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 55/155 (35%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADFMT+L AFF+VM+ ++ D+ + T G + P Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDNKRIVQATESIRWAMHFSGTGGTGALPLFDGPPS 75 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + ++ + +++ + S E + ++ + Sbjct: 76 EGGGPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAAT 135 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + D ++ +++ + + + E+ L ++ Sbjct: 136 EFFDPGQAALRPQALALLDAIAVEIVPLERPLRVE 170 >gi|238024905|ref|YP_002909137.1| OmpA/MotB [Burkholderia glumae BGR1] gi|237879570|gb|ACR31902.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 225 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 16/160 (10%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +S+ K+ ++ + ++R+ L + + + + + G+ Sbjct: 60 RSVEKQAASQTTQGTRAGAESTAARQRMLALLEPLRA----------KHEISIASLPQGV 109 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIAR- 282 ++I +F+ + LPE++ VL ++ VL T I + GHTD+ P Sbjct: 110 EVTI---NAKILFNSGEAHLLPESMDVLDQVAAVLRDPLTANIIVEGHTDSVPISTSKYE 166 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 NW LS RA + + LM GV R++ + G A + + Sbjct: 167 SNWELSSARAGAVVRFLMDKGVGAHRMAAV-GRADNVPLV 205 Score = 38.7 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 K D+T G W I YAD +T LM FL ++++ + Sbjct: 14 KAAYGDETDEQSGRWLISYADLITTLMVLFLALYVLQLARSRELE 58 >gi|94986930|ref|YP_594863.1| flagellar motor protein [Lawsonia intracellularis PHE/MN1-00] gi|94731179|emb|CAJ54541.1| Flagellar motor protein [Lawsonia intracellularis PHE/MN1-00] Length = 206 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 10/181 (5%) Query: 168 NKEENYFLPPLSKEKILA--MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 ++++N KE +A +K ++ + K + + ++ + + T G Sbjct: 23 DQQKNITTKQTIKESEVADFLKLREEMIAAQKNTFDAIRSFITEHALGDNIKATFDNG-- 80 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIAR-- 282 I + + +F S P+ L ++ ++ L + + I+I+G+TD S AR Sbjct: 81 IITLRLPDEVLFAPGSEQLTPQGEKALSQLRDLFLKNREQSINIKGYTDNSSVSEGARFH 140 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 +NW LS RA + + L++ G+ R++ +G +D + NRR++ +E Sbjct: 141 NNWELSALRAVNVLRKLLQGGIEATRMTA-TGLGDLDPLAPNDTPENRAQNRRVEFTLER 199 Query: 341 R 341 + Sbjct: 200 K 200 >gi|149910946|ref|ZP_01899577.1| hypothetical protein PE36_12217 [Moritella sp. PE36] gi|149806013|gb|EDM65997.1| hypothetical protein PE36_12217 [Moritella sp. PE36] Length = 457 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 10/151 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLF-ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 A ++ L L+ I++ ++ + I I I +F S P +++K Sbjct: 311 ASSLTLKLEQLLQTEIMRNIVVVQELSDRIRIRITSSD---LFASGSDQINPAYQPIIRK 367 Query: 255 IGEVLAHSTEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I L + I I GHTD + NW LSL RA S VL K R+ Sbjct: 368 IARTLESTQGQILITGHTDKQQIISSRYPSNWHLSLARATSIADVLAKDTRLGGRLLP-E 426 Query: 314 GFAHHRLKIASDPMN----SANRRIDILVED 340 G + + NRR++I + Sbjct: 427 GRGSSEPLAVDPTFSHDQHALNRRVEIDILR 457 >gi|58582662|ref|YP_201678.1| hypothetical protein XOO3039 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427256|gb|AAW76293.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 438 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ L+A G+L T G S + + MF S+ + +L+++ L Sbjct: 296 ALAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTHLLERVAAALEQ 354 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GHTD P R++ +DN+ LS RA S VL +G+ + R + SG + Sbjct: 355 VPGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQP 413 Query: 321 --KIASDP-MNSANRRIDILVED 340 P + NRR++IL+ Sbjct: 414 IALPPQLPGNRARNRRVEILLIP 436 >gi|62178845|ref|YP_215262.1| hypothetical protein SC0275 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126478|gb|AAX64181.1| putative outer membrane protein, OmpA family [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713295|gb|EFZ04866.1| Type IV / VI secretion system, DotU [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 434 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 296 RLKILLANEIARGLLTVDEDDQHSRVVF---RGGAMFVPGQKTVSDAIRPVINKAAREIA 352 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD+ P + N LS RA +L GV R+ I G Sbjct: 353 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTV 411 Query: 320 LKIAS--DPMNSANRRIDILVED 340 + + NRR++ILV + Sbjct: 412 PVADNGSKAGRAKNRRVEILVVE 434 >gi|254489078|ref|ZP_05102282.1| OmpA/MotB domain protein [Roseobacter sp. GAI101] gi|214042086|gb|EEB82725.1| OmpA/MotB domain protein [Roseobacter sp. GAI101] Length = 416 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 11/169 (6%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR-------NTP 235 + + + + ++ V N VKG L + GI+ DQ+ + Sbjct: 246 LDSGQVAELMRRAPPPPPPPPPPDVQLNRVKGFLQKEISDGIVEVFQDQQTITVRLAGSN 305 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 MF S P L+K+ + L + + + GH+D P ++ N RLSL RA + Sbjct: 306 MFGSGSDRLQPAFEEPLRKVAQALDETEGPVIVVGHSDNIPIKSSRFPSNERLSLARAEA 365 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + L DR+ G A + + + NRRI+I++ + Sbjct: 366 VMRTLEGKLAKSDRLEA-EGRAEKQPIADNSTREGRAKNRRIEIVLVRK 413 >gi|149178577|ref|ZP_01857164.1| OmpA/MotB [Planctomyces maris DSM 8797] gi|148842595|gb|EDL56971.1| OmpA/MotB [Planctomyces maris DSM 8797] Length = 278 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 12/246 (4%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 I++++ + ++ Y+ + + Q + + S + L Sbjct: 17 TISQSACQRGPNAQLRQSMYRSQQLYDQNSELAMQRDQFQQSANALQHERDQLAMRAQSL 76 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +S N L L+ E+ +R L AK S L G + Sbjct: 77 ESNLNIANKRLDNLNAERSEMQQRYVSLMKKAKGQPSPLDGEATRRFQELADKYPDFEFD 136 Query: 225 LISIIDQRNT-PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNI 280 I+ + + ++ +F S P +L + ++ + + GHTD P Sbjct: 137 PITGVSKFHSDILFSSGSDNLKPAAQEILNQFAAIMNDGNAKRLNVLVVGHTDDKPISKA 196 Query: 281 A-----RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 + R NW LS +RA S L K GV ++R+ +G++ + + +D NRR Sbjct: 197 STQRQHRTNWHLSTNRANSVVLTLSKFGVKQERMGA-AGYSMFQPVVPNQNDSARQKNRR 255 Query: 334 IDILVE 339 ++I V Sbjct: 256 VEIFVL 261 >gi|84624549|ref|YP_451921.1| hypothetical protein XOO_2892 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368489|dbj|BAE69647.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 438 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ L+A G+L T G S + + MF S+ + +L+++ L Sbjct: 297 LAPLLAAEQRAGLLTVHTD-GDGRSTVRLASASMFPSGSAELDADQTYLLERVAAALEQV 355 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL- 320 + + GHTD P R++ +DN+ LS RA S VL +G+ + R + SG + Sbjct: 356 PGRVVVVGHTDDQPVRSLRFKDNFALSARRAESVGAVL-AAGLRDRRRVQTSGAGDSQPI 414 Query: 321 -KIASDP-MNSANRRIDILVED 340 P + NRR++IL+ Sbjct: 415 ALPPQLPGNRARNRRVEILLIP 436 >gi|167896753|ref|ZP_02484155.1| hypothetical protein Bpse7_23620 [Burkholderia pseudomallei 7894] Length = 389 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ L+A I G L + S + R MF ++ P +++KI + Sbjct: 249 ELRLATLLAGEIAAGTL--SVEENARRSSVMFRGDAMFAPGAAGVNPAMGPLIRKIAAEI 306 Query: 260 AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH 317 A +++RG+TD P ++ N LS +RA Q+L +GV R+ + G A Sbjct: 307 ARVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSAGVPASRLEALGKGGAE 366 Query: 318 HRLKIASDPMNSANRRIDILV 338 + + NRR++I V Sbjct: 367 PIGDNRTPQGRALNRRVEITV 387 >gi|68304102|gb|AAY89709.1| MotB [Escherichia coli LW1655F+] Length = 144 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%) Query: 4 HGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKK 63 G + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + Sbjct: 7 RGSMKNQAHPIIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELI 65 Query: 64 AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 I +YF +T I + ++P + + + N +LK + + Sbjct: 66 QIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLR 125 Query: 124 YQRLENNIFYLSNSQ 138 R + + S+ + Sbjct: 126 KLRGDLDQLIESDPK 140 >gi|70729207|ref|YP_258943.1| OmpA family protein [Pseudomonas fluorescens Pf-5] gi|68343506|gb|AAY91112.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 270 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + E + + L +R + AK +S G + + + T Sbjct: 89 SEIAREHTEQALNNERAAKLELERQRLQLALREAKLLSVQQQGKWLEEQIISLATTQTDR 148 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G+++++ D +FD + + K+ + L + + + I G+TD + Sbjct: 149 GLVMTLGD----VLFDTGEAELKNSANRTVLKVVQFLQLNPKRVVRIEGYTDNT---GER 201 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 + N +LS DRA + VL+ G+ E RI ++ G+ AS+ + NRR++I+ Sbjct: 202 QSNLQLSKDRAQAVADVLVDLGIDEKRI-QVEGYGDDYPVEANASERGRAQNRRVEIVFS 260 Query: 340 DRQG 343 D +G Sbjct: 261 DEKG 264 >gi|289668951|ref|ZP_06490026.1| OmpA family protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 G S + + MF S+ + +L+++ L + + GHTD P Sbjct: 72 LTVQTEGDGRSTVRLASASMFPSGSAELDADQTRLLERVAAALEQVPGRVVVVGHTDDQP 131 Query: 277 FRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDP-MNSANR 332 R++ +DN+ LS RA S VL +G+ + R + SG + P + NR Sbjct: 132 VRSLRFKDNFALSARRAQSVGAVL-AAGLRDPRRVQTSGAGDSQPIALPPQLPGNRARNR 190 Query: 333 RIDILVED 340 R++IL+ Sbjct: 191 RVEILLIP 198 >gi|326799849|ref|YP_004317668.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326550613|gb|ADZ78998.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 302 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 9/161 (5%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + K + L +++ L+ ++ ++ V + + + IS+ D ++ S Sbjct: 116 VNTKAKSDSLNMVLTNNLTRSLSREEMQDVDVQVLKGVVYISLSDNM---LYKSGSYEIS 172 Query: 246 PETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KS 302 P L KI +++ + I G+TD P R+NW LS RA S Q L Sbjct: 173 PAAGETLGKIAKIIMDYKEYEVLIEGNTDNVPISQKNIRNNWDLSALRASSVVQALQNDY 232 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 GV R++ G + ++D + NRR I++ + Sbjct: 233 GVDPKRLTA-GGRGEYNPIASNDTEAGRTRNRRTQIIITPK 272 >gi|307565706|ref|ZP_07628175.1| OmpA family protein [Prevotella amnii CRIS 21A-A] gi|307345532|gb|EFN90900.1| OmpA family protein [Prevotella amnii CRIS 21A-A] Length = 286 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 14/242 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + + K+ + Q + NN S Q K S S + Sbjct: 31 TENNKLTNDYQSAKETIAANNARIKSLEDQLAQAKESAAALQGSLDKSLTSANYNNINIA 90 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + + ++ ++ K + L + + L+ ++ +K V + + + IS+ Sbjct: 91 KLVDQINESNQYIRHLVEVKTKSDSLNMALQNNLTRSLSREELKEVDIQVLKGVVYISLA 150 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA------R 282 D ++ S L KI +++ + I G+TD P R Sbjct: 151 DNM---LYKSGSYEINSRAEQTLSKIAKIIMDYNNYDVLIEGNTDNVPINTTNKIMANIR 207 Query: 283 DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 +NW LS RA S L + GV RI+ G + + +D NRR I++ Sbjct: 208 NNWDLSALRATSVANYLQTRFGVDPSRITA-GGRGEYNPIVGNDTELGRQRNRRTQIIIT 266 Query: 340 DR 341 + Sbjct: 267 PK 268 >gi|146307342|ref|YP_001187807.1| hypothetical protein Pmen_2317 [Pseudomonas mendocina ymp] gi|145575543|gb|ABP85075.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 453 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ R +F S+ +L +I E + + + GH+D P + NW Sbjct: 334 SVVTIRGDELFASGSASISDNLQPLLLRIAEAIRQVKGNVLVTGHSDDRPIATLRYPSNW 393 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 +LS DRA VL +R + G + +++ + NRR++I V Sbjct: 394 KLSQDRAQQVMDVLAARSGQPERFTA-EGRSDTEPVASNESAAGRARNRRVEITV 447 >gi|170751735|ref|YP_001757995.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658257|gb|ACB27312.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 337 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 90/259 (34%), Gaps = 21/259 (8%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 DE + + + + + Q + + + + + + Sbjct: 80 DEVRNLRTTLAGVEAERDRAKVQAEAATVSQGAAGTLDKQLETERGATRRAQSQIDLLNE 139 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD---------NIVK 213 ++ ++ L+ + + + R+ +L +++ L+ V + ++ Sbjct: 140 QISAMRRQLAALEDALAASESRDRESQARIAELGSRLNVALAQKVQELARYRSNFFGRLR 199 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--------EVLAHSTEV 265 +L ++ ++ +F S+ PE L +I ++ A V Sbjct: 200 QILGNRPDIRVVGDRFVLQSEVLFPAGSATLKPEAGPELDRIAGAVSELAKQIPADLPWV 259 Query: 266 ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-- 322 + + GHTDA P NW LS RA + Q L G+ + F + Sbjct: 260 LRVDGHTDARPISTSQFPSNWSLSAARAIAVVQFLAGKGIPPQHLLA-GAFGEFQPLEAG 318 Query: 323 ASDPMNSANRRIDILVEDR 341 A++ + NRRI++ + +R Sbjct: 319 ATEEAYARNRRIEMKLTER 337 >gi|126664115|ref|ZP_01735108.1| putative flagellar motor protein MotB [Flavobacteria bacterium BAL38] gi|126623829|gb|EAZ94524.1| putative flagellar motor protein MotB [Flavobacteria bacterium BAL38] Length = 278 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 15/212 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E + + + DL + ++ + L + + RLQD K Sbjct: 53 EALASQVDFLKKNNTDLINNMGNLTTLTTKGAENLEKSLESLKEKDLKINRLQDALTKKD 112 Query: 201 STLSGLVADNIVK------GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 S LV + + + I+ISI D +F S + VL K Sbjct: 113 SVTLALVTSLKREVGIDDPDININVEKGVIMISIADN---LLFKSGSYEVSDKAKGVLAK 169 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311 + +V+ + + GHTD P +N DNW LS+ RA S +VL K GV+ ++ Sbjct: 170 VAKVINSKPDFECMVEGHTDNVPIKNAVLLDNWDLSVKRATSIVRVLHKELGVNPKQLIP 229 Query: 312 ISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 +G + + + +D + NRR I++ + Sbjct: 230 -AGRSSYIPLVENDSPANRAKNRRTKIIIMPK 260 >gi|299145102|ref|ZP_07038170.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23] gi|298515593|gb|EFI39474.1| putative flagellar motor protein MotB [Bacteroides sp. 3_1_23] Length = 280 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 15/225 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N +Q S KN L ++ G + + + E+ LS++K +R+ Sbjct: 43 NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 102 Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241 + + +L I + + + N+ +L +T + + D + + +F S Sbjct: 103 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 161 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L Sbjct: 162 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 221 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +K+ V+ +I + SG + + S NRR +I++ + Sbjct: 222 IKNYNVNPLQI-QPSGRGEYMPVDDNKTAEGRSKNRRTEIIMAPK 265 >gi|167741000|ref|ZP_02413774.1| hypothetical protein Bpse14_23241 [Burkholderia pseudomallei 14] Length = 433 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L T S++ R MF S L E VL K+ +A Sbjct: 295 RLSILLKNEIARGLL--TVDEDDRRSVVVFRGDSMFRSGESRVLSEIEPVLDKVAREVAR 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G DRI + G + Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRI-RSEGRGDAQP 411 Query: 321 K--IASDPMNSANRRIDILV 338 A+ S NRR++I V Sbjct: 412 VAENATPAGRSRNRRVEIAV 431 >gi|332290734|ref|YP_004429343.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332168820|gb|AEE18075.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 293 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 12/204 (5%) Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 +K + + S DL + + L K +K + L KK S TL+ Sbjct: 67 AEMRKDKNELIQSSKDLTMLTKQGASNLEKSLESLKEKDLKINRLQDALTKKDSVTLA-- 124 Query: 207 VADNIVKGVLFETTRTGILIS----IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++ K V T I + I + +F S +L K+ V+ Sbjct: 125 LVTSLKKEVGINDTDIEINVEKGVVFISLSDKVLFKSGSYNITSRAEEILGKVATVINGK 184 Query: 263 TE-VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + GHTD P+ DNW LS RA + + L+ G + ++ +G + Sbjct: 185 PNFEALVEGHTDNVPYNKGGVLIDNWDLSAKRATAIVRKLVDLGANPAQLIA-AGRSEFV 243 Query: 320 LKIASDP--MNSANRRIDILVEDR 341 + + S NRR I V + Sbjct: 244 PLVDNSTAENRSTNRRTKIYVLPK 267 >gi|300113742|ref|YP_003760317.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113] gi|299539679|gb|ADJ27996.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113] Length = 286 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 14/253 (5%) Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 P + + + D+ + ++ + + K+ QR + N ++ EH + Sbjct: 34 PAKLERAEADVEQAQADSRVTQYAPVRLDEAKEALQRAQVAWEADKNVEEVEHLAYLAQQ 93 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + + + I L L ++ K +A+ + L +A Sbjct: 94 RAAIAEMAAADKAAQAEIKNLGQERQQMLMDMHELEARQAKEQAKMAEVRADKLEKRLA- 152 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + E T G ++++ D +F+ S+ + L ++ L + + I Sbjct: 153 ----ALNAEKTERGYVLTLGD----ILFEVDSAELTSGGMQNLFRLVTFLKEYPDRQVVI 204 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPM 327 GHTD++ N LS RA + Y+ L+ +G+S RI+ G A+ + Sbjct: 205 EGHTDST---GSGVYNMELSQRRADAVYEFLVNNGISPARIAAHGYGKAYPVAPNNTAAG 261 Query: 328 NSANRRIDILVED 340 NRR++I++ D Sbjct: 262 RQKNRRVEIVILD 274 >gi|294644876|ref|ZP_06722614.1| OmpA family protein [Bacteroides ovatus SD CC 2a] gi|294808230|ref|ZP_06766993.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b] gi|292639770|gb|EFF58050.1| OmpA family protein [Bacteroides ovatus SD CC 2a] gi|294444557|gb|EFG13261.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b] Length = 256 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N +Q S KN L ++ G + + + E+ LS++K +R+ Sbjct: 19 NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 78 Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241 + + +L I + + + N+ +L +T + + D + + +F S Sbjct: 79 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 137 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L Sbjct: 138 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 197 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +K+ V+ +I + SG + ++ S NRR +I++ + Sbjct: 198 IKNYNVNPLQI-QPSGRGEYMPVDDNETIEGRSKNRRTEIIMAPK 241 >gi|70733365|ref|YP_263140.1| hypothetical protein PFL_6082 [Pseudomonas fluorescens Pf-5] gi|68347664|gb|AAY95270.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 441 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+G +A++I G + + S++ R +F +S+ L + ++ +I + + Sbjct: 299 RLAGFLAEDIKAGRV--AVEDAVDRSVVTIRGDELFASASASILDDYQPLMLRIADAVRK 356 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I GH+D P + NW+LS RA S Q+L +R S G + Sbjct: 357 VKGQVRITGHSDNRPIATLRFPSNWKLSQARAESVLQILAAKTGQPERFSA-EGRSDTEP 415 Query: 321 K--IASDPMNSANRRIDILVE 339 A+ + NRR++I V Sbjct: 416 LATNATAEGRARNRRVEISVL 436 >gi|225010858|ref|ZP_03701326.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-3C] gi|225005066|gb|EEG43020.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-3C] Length = 277 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 20/226 (8%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 + + + N + +N+Q+ + +LT + KG D +LE+S+ + L Sbjct: 51 DTARLQLLEDQNAYLKANNQELINNLGNLTTLTSKGAD-----NLERSLESLKEKDLTIR 105 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + L L + + L L ++ + + + +SI D +F+ Sbjct: 106 KLNNAVTRRDSVNLA-LVQSLKGVLGNLDDED----IEISVEKGVVFVSISD---KLLFN 157 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAY 296 S + + VL+K+ +V+ + + + GHTD F DNW LS+ RA S Sbjct: 158 TGSYVVSNKAKSVLEKVAKVVNNKPDFEFMVEGHTDERSFSKGDLVDNWDLSVKRATSVV 217 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 ++L K GV R++ +G A + + S NRR I+V + Sbjct: 218 RMLQKDFGVDPKRMTA-AGRAEYMPVSSE---LSKNRRTRIVVLPK 259 >gi|254182815|ref|ZP_04889408.1| OmpA domain protein [Burkholderia pseudomallei 1655] gi|184213349|gb|EDU10392.1| OmpA domain protein [Burkholderia pseudomallei 1655] Length = 421 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 4/217 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 205 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 264 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 265 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 322 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 323 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 382 Query: 303 GVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 GV R+ + G A + + NRR++I V Sbjct: 383 GVPASRLEALGKGGAAPIGDNRTPQGRALNRRVEITV 419 >gi|295085810|emb|CBK67333.1| Flagellar motor protein [Bacteroides xylanisolvens XB1A] Length = 256 Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 15/225 (6%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N +Q S KN L ++ G + + + E+ LS++K +R+ Sbjct: 19 NNSREVGNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERE 78 Query: 190 KRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSS 241 + + +L I + + + N+ +L +T + + D + + +F S Sbjct: 79 RTINELQDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGS 137 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L Sbjct: 138 ARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRIL 197 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +K+ V+ +I + SG + ++ S NRR +I++ + Sbjct: 198 IKNYNVNPLQI-QPSGRGEYMPIDDNETIEGRSKNRRTEIIMAPK 241 >gi|296156473|ref|ZP_06839311.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295893072|gb|EFG72852.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 233 Score = 99.6 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 8/158 (5%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 E + S D++KK L + D + + G+ I+I Sbjct: 65 ERHALTEAASAGNAQPSNAMPSAPDVSKKRLLALLAPLQDK--RQIAISNAAQGVEIAI- 121 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR-DNWRL 287 +F+ + LPE+ VL +I VL + I + GHTD P NW L Sbjct: 122 --NAKILFNSGDARLLPESFEVLNQIAGVLRDRSKNNILVEGHTDNVPISTAKYESNWEL 179 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 S RA + + G+ R++ I G A + I D Sbjct: 180 SSARAGAVVRFFADKGIEAHRMAAI-GRADNFPLIIGD 216 Score = 41.0 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81 A ++ G W I YAD +T LM FL ++++ + + + + Sbjct: 19 AAGESEEQSGRWLISYADLITTLMVLFLALYVLQLAKTRELEIKALERHALTEAASAGNA 78 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 + P +K L ++ + I + Q + +F +++ Sbjct: 79 QPSNAM--PSAPDVSKKRLLALLAPLQDKRQIAISNAAQGVEIAINAKILFNSGDARLLP 136 Query: 142 HCKNSLTRDSEKGKDLCKS 160 L + + +D K+ Sbjct: 137 ESFEVLNQIAGVLRDRSKN 155 >gi|260597012|ref|YP_003209583.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032] gi|260216189|emb|CBA29047.1| hypothetical protein CTU_12200 [Cronobacter turicensis z3032] Length = 424 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 73/168 (43%), Gaps = 8/168 (4%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRN 233 +P S + L ++ + + L+ L+ + I + V + + + Sbjct: 259 MPQESFRQQLLAMQRLPVTEPRPAERLRLAVLLKEEIARHWVSVDESPRESRVIFH---G 315 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292 MF ++I P+ + +++++ + + I GHTD++P R+ A N LS RA Sbjct: 316 DSMFSSGAAIVRPDRVDIIRRVAAEVRRVDGAVVIIGHTDSTPIRSGAFASNQALSEKRA 375 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + + G++ ++I+ G + ++ + S NRR++I V Sbjct: 376 EAVAAYFLAQGIAPEKITP-KGAGDTQPIASNHDEKGRSQNRRVEIFV 422 >gi|83716132|ref|YP_438328.1| hypothetical protein BTH_II0126 [Burkholderia thailandensis E264] gi|167614770|ref|ZP_02383405.1| hypothetical protein BthaB_00705 [Burkholderia thailandensis Bt4] gi|257141357|ref|ZP_05589619.1| hypothetical protein BthaA_19439 [Burkholderia thailandensis E264] gi|83649957|gb|ABC34021.1| OmpA domain protein [Burkholderia thailandensis E264] Length = 433 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ + I +G+L + + R MF S LPE VL K+ +A Sbjct: 295 RLSILLKNEIARGLLTVDEDDARSVVVF--RGDSMFRSGESRVLPEIEPVLDKVAREVAR 352 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 +++ GH+D P R +N LS RA Q+L++ G D I + G + Sbjct: 353 VGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHI-RSEGRGDAQP 411 Query: 321 KIASDP--MNSANRRIDILV 338 + S NRR++I V Sbjct: 412 VAENTTPAGRSRNRRVEIAV 431 >gi|113866689|ref|YP_725178.1| outer membrane protein [Ralstonia eutropha H16] gi|113525465|emb|CAJ91810.1| outer membrane protein [Ralstonia eutropha H16] Length = 425 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ L+ D I +GV+ + + S + R MF + + + +L K+ + Sbjct: 287 RLAELLKDEIARGVI--SVQEDATRSAVTFRGDDMFGGGRAEVSDKVLPLLDKVAGEINK 344 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + +++ GH+D P + N LS +RA + + L GV+++R+ I G Sbjct: 345 VSGKVTVVGHSDNVPIKTAKYPSNQVLSEERAATVTEYLASKGVAKNRLEAI-GKGDSEP 403 Query: 321 K--IASDPMNSANRRIDILVED 340 + + NRR++I+V Sbjct: 404 LTDNKTPAARARNRRVEIVVTP 425 >gi|78356759|ref|YP_388208.1| chemotaxis protein PomB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219164|gb|ABB38513.1| chemotaxis protein PomB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 253 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 10/183 (5%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLF 217 K + KE ++ S+ + ++ K ++L + + ++ D + K Sbjct: 64 KEAFGVQIKRKEASFAAFSPSEFERKDVELDKENKELLGMVLEVKNFVIQDPELKKTAKI 123 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 T G++I I + +F S+ PLP+ + +L + +R HT Sbjct: 124 TTEDAGVVIRI---PSYALFAPGSAKPLPDAASKTATVVRILRERNLDLVVRCHTSDEKA 180 Query: 278 R--NIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANR 332 ++ NW LS RA + ++L+K G + R+ + G+A + + + D + N Sbjct: 181 EEESLYPSNWELSSARAAAVLRLLIKEGDIPPSRMKAV-GYADSQPLLPNNTDENRAINS 239 Query: 333 RID 335 R++ Sbjct: 240 RME 242 >gi|260595859|ref|YP_003208430.1| hypothetical protein CTU_00670 [Cronobacter turicensis z3032] gi|260215036|emb|CBA26725.1| hypothetical protein CTU_00670 [Cronobacter turicensis z3032] Length = 380 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 8/176 (4%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + + L + + + + ++ +++A ++ L G + I G+ Sbjct: 193 LGDNTSPVLAKIYQTPLPEVTVQQPAREVAPVLN--LRGFLRPEIEAGL-VAVRDEADR- 248 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +S++ V+ ++ + + + + I + G++D P R+ N+ Sbjct: 249 SVVILKGDGLFASASTVVRDRYEPVIDRVAQAMNNVSGKILVVGYSDNVPIRSARFASNY 308 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LSL RA S ++L R+ + G ++ + NRR++I + Sbjct: 309 ELSLSRAESVQKMLQAHLADPSRV-RAQGRGEMDPIAPNNTPENRARNRRVEITLL 363 >gi|256830500|ref|YP_003159228.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579676|gb|ACU90812.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 242 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 75/187 (40%), Gaps = 8/187 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ + + F+ + + A+ +R++DL G+ + + + Sbjct: 56 DMGLAPKKGAGRLTTKFEFMNRIIENPAEALHDPQRIKDLLFPDEVLPEGMARSTLNENL 115 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 GI + + D +F S ++ +L + + LA T +++ G+TD Sbjct: 116 QILVRPEGIALVLSDGM---LFGVGESALTEDSRKLLSEFAQFLASVTMPVNVAGYTDNI 172 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 P +DN+ LS +RA S ++ G R +S + A+ + NRR Sbjct: 173 P--AGQKDNYMLSSERAMSVLTFFLQQGFDPRRF-SVSAYGEAFPLGDNATPEGRAKNRR 229 Query: 334 IDILVED 340 ++IL++ Sbjct: 230 VEILLKT 236 Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ + + SW + +AD MT+L++FF+++ +++ D + + +F Sbjct: 1 MARRKKRAELESPGASWMVTFADLMTLLLSFFVLLLSMSSMDKSILRDVVSHFVGDMGLA 60 Query: 77 MTASKG 82 G Sbjct: 61 PKKGAG 66 >gi|302035651|ref|YP_003795973.1| putative OmpA/MotB family outer membrane protein [Candidatus Nitrospira defluvii] gi|300603715|emb|CBK40046.1| putative Outer membrane protein, OmpA/MotB family [Candidatus Nitrospira defluvii] Length = 501 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 16/231 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 +++ ++ + +Q S ++ + G D KSI ++ S Sbjct: 248 EQRLNEKGRDLSPRQKGTQLSSSQRDGGPLNQRSGAAHQSLGDTTKSIPDGKSAAQGKDS 307 Query: 180 KEKILAM-----KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 +A + + R +A L L DN K + + +++ + Sbjct: 308 TRSGVAFPGNPAQSEARNGSIAAVKEELLKVLPGDNRQKTISMRQDGNRLTVAL---DSN 364 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLSL 289 +F + PE +L++IG VL + + + GHTD DN LS Sbjct: 365 LLFTWGDAALSPEGATILKRIGAVLGQLPDKFVQVAGHTDNQALSKTLQKTFPDNKALSW 424 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RA +A + L+ G+ D+ + G A R A++ NRR+++++ Sbjct: 425 ARAENARRALVNGGIPADKTKAV-GLADTRPLTSNATEQGRQKNRRLELII 474 >gi|74095554|emb|CAJ27320.1| conserved hypothetical protein [Cronobacter sakazakii] Length = 444 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+ I + V + ++ + MF + PE I +++++ + Sbjct: 306 RLAVLLKAEIARHWVSVDESQRESRVIFH---GDSMFAVGDASVRPERIDIIRRVAAEVQ 362 Query: 261 HSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I GHTD++P R+ A N LS RA + + G++ ++I+ G + Sbjct: 363 RVNGEVVIIGHTDSTPIRSGAFASNQALSEKRAQAVAAYFREQGIAPEKITS-KGAGDTQ 421 Query: 320 LKIASDP--MNSANRRIDILV 338 ++ S NRR++I V Sbjct: 422 PIASNHDAQGRSQNRRVEIFV 442 >gi|284040434|ref|YP_003390364.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283819727|gb|ADB41565.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 537 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 19/257 (7%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ---QSEHCKNSLTR 149 + + + + + N GST+ + L + + Q Sbjct: 292 GKGDIVRVKLTDDTPANQPGKVGGSTDVATNTDATRPDPVALISGKVIDQLTGKPIEARI 351 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL--V 207 + D ++ + E + P + + K + + A + G + Sbjct: 352 IYQTLPDGAEAGEATSDPITGEYKIVLPYGQRYTMRAVAKDFIAEGANIDLTQPKGYQQI 411 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266 D +K + E G ++ + N FD S PE+ L ++ L + ++ I Sbjct: 412 TDQQLKLIPIEV---GSVVRL----NNIFFDTGKSELRPESGPELDRLVTTLNDAPKMTI 464 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 +RGHTD + N +LS DRA + + + G+ DRI+ GF + +++ Sbjct: 465 EVRGHTDNT---GSNEINAKLSQDRADAVREYFISKGIEPDRIAS-KGFGEAKPTASNNT 520 Query: 327 MNSA--NRRIDILVEDR 341 NRR++ ++ + Sbjct: 521 EEGRQQNRRVEFVIVKK 537 >gi|120553263|ref|YP_957614.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120323112|gb|ABM17427.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 348 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 54/332 (16%), Positives = 114/332 (34%), Gaps = 28/332 (8%) Query: 37 YADFMTVLMAFFLVMWIINATDD----DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 Y D ++ L+ + M ++ T + L + + EQ+ E Sbjct: 18 YVDALSALLMLVIFMLLVYVVCQLYLSQTLSDRDNQLARLSAQLNELPELLGLEQSKTEA 77 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + L D + D I ++ + Q + + +D Sbjct: 78 LENQIVRLQDDYSTSLKRNDQLIEQLESNREQLMRQTASVEAQAEQLARMEEAVGEKDQI 137 Query: 153 KGKDLC---KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + ++ S+ ++ L ++ + ++++ L+ +++++++ L+ V Sbjct: 138 SASQQAMILQLSNQIVSLREQLRQIASALELQQQMTDEKEQELEQVSRRLNTLLAERVNQ 197 Query: 210 NIVKGVLF-----ETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKI----- 255 F + + I+ R + +F +S+ E L K+ Sbjct: 198 LQQYQSEFFARLRDILAGNENVRIVGDRFLLPSELLFASASAELGEEGRQELDKLADLLL 257 Query: 256 ---GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + ++ I GHTD P NW LS RA + + L GV E R++ Sbjct: 258 DVSSRIPDDVDWILRIDGHTDMLPINTQRFPSNWELSTARAVAVVRYLATEGVPERRMAA 317 Query: 312 ISGFAHHRLKIA-SDPMN-SANRRIDILVEDR 341 +GF + P NRRI++ + DR Sbjct: 318 -AGFGEFFPVADGTSPEALQRNRRIELKLTDR 348 >gi|315123150|ref|YP_004065156.1| hypothetical protein PSM_B0207 [Pseudoalteromonas sp. SM9913] gi|315016910|gb|ADT70247.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 426 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 D + L L+ I G++ GI I+I + +F + S LP +L Sbjct: 280 DKKDQQLRVLEQLLQTEIKMGIVAVAKNSDGIRITINSEN---LFKQGDSQLLPSFQPIL 336 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +K+ L + + I GHTD P NW LSL RA ++ KS R+ Sbjct: 337 EKLALSLEGTKGRVLITGHTDDLPISTDKYPSNWHLSLARATQVANLMAKSTNLSGRLWP 396 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVE 339 G ++ S NRRI+I + Sbjct: 397 -EGKGAAEPIASNSDSASRSLNRRIEIDLL 425 >gi|293369282|ref|ZP_06615869.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] gi|292635612|gb|EFF54117.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] Length = 256 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 15/219 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +Q S KN L ++ G + + + E+ LS++K +R++ + +L Sbjct: 25 GNQLSAQVKNLLRDTTKMGNSIRQYQSMLNVNMTEQEKLNALLSQKKNELNERERTINEL 84 Query: 196 AKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQR------NTPMFDKSSSIPLPE 247 I + + + N+ +L +T + + D + + +F S+ Sbjct: 85 QDMIKAQNDKVQNLLSNVKDALLGFSTDE-LTVREKDGKVYVAMSDKLLFQSGSARLDKR 143 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GV 304 L K+ EVL T+ + I GHTD P + +DNW LS+ RA S ++L+K+ V Sbjct: 144 GEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQFKDNWDLSVIRATSVVRILIKNYNV 203 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +I + SG + ++ S NRR +I++ + Sbjct: 204 NPLQI-QPSGRGEYMPVDDNETIEGRSKNRRTEIIMAPK 241 >gi|144899936|emb|CAM76800.1| OmpA/MotB [Magnetospirillum gryphiswaldense MSR-1] Length = 220 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 73/165 (44%), Gaps = 18/165 (10%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 ++ ++++ ++++ + + + V T G+++++ MF S+ P Sbjct: 62 QRPIENMRQELTQAAATVQGSD--DAVDVGTDDRGVVMNL---DAGAMFTPGSADIKPTM 116 Query: 249 IVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV 304 + +L+++ L + I+GHTD++P + N+ L+ RA + + + GV Sbjct: 117 VPLLKELAGTLNQPRFDNYRLEIQGHTDSTPVKTAQFPSNFDLASARALATMRAFVSLGV 176 Query: 305 SEDRISKISGFAHHRLKIASD--------PMNSANRRIDILVEDR 341 +E ++ ++ + ++ + + NRR+ I + R Sbjct: 177 AESKMI-VAAYGQFAPRVPNTLEDGTPLPANQALNRRVAIHIYPR 220 Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SW Y D +T+L+ FF+++ I+ D + + ++ MT+ G Q P E Sbjct: 15 SWMETYGDMVTLLLCFFILLASISKVDSVIYEKV--------QSGMTSEIGKQPPQRPIE 66 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTN 119 Q + + ++VD+ Sbjct: 67 NMRQELTQAAATVQGSDDAVDVGTDDRG 94 >gi|167576592|ref|ZP_02369466.1| hypothetical protein BthaT_00570 [Burkholderia thailandensis TXDOH] Length = 433 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 100/319 (31%), Gaps = 32/319 (10%) Query: 28 NNLGSW-----KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 G W I Y + FFL++ + + +E + G Sbjct: 137 GGGGVWASQSLLITYEGEVDGGEKFFLLIGRMATDPQEYVDILEILYRVLGLGFEGRYSV 196 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + D R +I + IT ++ + + + + + Sbjct: 197 VAD-----GRRHLEQIRQRLWTLITGARDAIQPELSPHWRGAEPGKLPLLRSV----PAW 247 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 S G L N E L E +R + L +I+ Sbjct: 248 ATGSFVFLLLFGLFAFYQYRLLTERNALEARILAIAKDEPASPQQRLRLSILLKNEIARG 307 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L + D+ V+F R MF S LPE VL K+ +A Sbjct: 308 LLTVDEDDTRSVVVF--------------RGDSMFRSGESRVLPEIEPVLDKVAREVARV 353 Query: 263 TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +++ GH+D P R +N LS RA Q+L++ G D I + G + Sbjct: 354 GGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADHI-RSEGRGDAQPV 412 Query: 322 IASDP--MNSANRRIDILV 338 + S NRR++I V Sbjct: 413 AENTTPAGRSRNRRVEIAV 431 >gi|256842297|ref|ZP_05547801.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736181|gb|EEU49511.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 295 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 +D ++ N + K L ++ L + + I+ + A N Sbjct: 82 RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 141 Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L + + +L +++ ++ + +F S+ L K+ EVL Sbjct: 142 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 201 Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 + + I GHTD+ P +DNW LS+ RA S ++L K GV+ +I + G Sbjct: 202 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 260 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ S NRR +I++ + Sbjct: 261 FMPVADNETADGRSKNRRTEIIMAPK 286 >gi|167590675|ref|ZP_02383063.1| hypothetical protein BuboB_35381 [Burkholderia ubonensis Bu] Length = 394 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLD 290 R MF + + ++ KI +A +++ G+TD +P R + N LS Sbjct: 284 RGDAMFPPGKAAVNASSGPLIAKIAAEIARVPGKVTVLGYTDNAPVRGSAFPSNEALSDA 343 Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 RA Q+L +GV +R++ + G A+ + P + NRR++I V Sbjct: 344 RATQVMQMLQAAGVPANRLAALGKGAANPIGDNRTVPGRALNRRVEITV 392 >gi|302035652|ref|YP_003795974.1| putative OmpA/MotB family outer membrane protein [Candidatus Nitrospira defluvii] gi|300603716|emb|CBK40047.1| putative Outer membrane protein, OmpA/MotB family [Candidatus Nitrospira defluvii] Length = 400 Score = 99.2 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 81/212 (38%), Gaps = 14/212 (6%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 +NS + KN+ + DL + + E ++ K ++K L Sbjct: 194 EANSHELAGLKNAAGDREKLVADLAAARQRASDLENEIGRRDQEMTALKGALDQQKTSLA 253 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + +S L VA V + + + T +FD + P VL Sbjct: 254 EAKDDLSKLLQAEVAKG---NVTMKQLGDQLT---LGLATTLLFDSGEATLKPGGADVLH 307 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRN----IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +IG VL + I + GHTD P + N LS RA SA Q L + G++ D+ Sbjct: 308 RIGGVLKQYPDRSIHVAGHTDNVPIKGRLAKTYPTNVELSQARAESARQALTEGGMAPDK 367 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I G A R ++ NRR++I+V Sbjct: 368 IEA-KGHADSRPMASNSTAEGRQKNRRVEIVV 398 >gi|307727324|ref|YP_003910537.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307587849|gb|ADN61246.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 230 Score = 99.2 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ S L+ L + + + + G+ I+I +F+ + L E+ VL +I Sbjct: 91 QLLSLLAPLQDN---RQITIAHSPQGVEIAI---NAKVLFNSGDARLLQESYGVLNQIAT 144 Query: 258 VLAH-STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 VL + I + GHTD+ P NW LS RA + + G+ R++ I G Sbjct: 145 VLRDRAKNNILVEGHTDSLPIATAKYESNWELSSARAGAVVRFFADKGIQAHRMAAI-GR 203 Query: 316 AHHRLKI 322 A + I Sbjct: 204 ADNFPLI 210 Score = 41.8 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 5/142 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 + D W I YAD +T LM FL ++++ + + + Sbjct: 16 RHHDGHDNGEQSDRWLISYADLITTLMVLFLALYVLQLAKNSELQ-----IKTLQHRAVK 70 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + G+ + K L +++ + I + Q + +F +++ Sbjct: 71 EAVGVQPPADAANAKEAAKEQLLSLLAPLQDNRQITIAHSPQGVEIAINAKVLFNSGDAR 130 Query: 139 QSEHCKNSLTRDSEKGKDLCKS 160 + L + + +D K+ Sbjct: 131 LLQESYGVLNQIATVLRDRAKN 152 >gi|46578465|ref|YP_009273.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough] gi|120603951|ref|YP_968351.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46447876|gb|AAS94532.1| chemotaxis protein MotB [Desulfovibrio vulgaris str. Hildenborough] gi|120564180|gb|ABM29924.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311232393|gb|ADP85247.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 246 Score = 99.2 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 9/207 (4%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S + R + + ++ + + L L + ++ L Sbjct: 41 SMSSVDRVQFERMASSLRQPGDLAGTPEAPRTDVSKRLRDLLMDAEALSANAVEIRSLLF 100 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 G+ A + + V G++I++ + +F + P ++ +L + + Sbjct: 101 PPQVLPPGVEARTVERDVEVLENPEGVVIALT---HDLLFPQGQDRLPPASLRLLDTLTD 157 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 VLA +++ HTDA+ D W LS RA S + ++ G+ R +SG+ Sbjct: 158 VLAGLDADVNVSAHTDAT---EGGADPWDLSDRRALSVLEHFLQRGMDPARF-SVSGYGP 213 Query: 318 HRLKIASD-PMNS-ANRRIDILVEDRQ 342 R AS P + NRR++ILV+ + Sbjct: 214 DRPLDASASPEAAQRNRRVEILVKTAK 240 >gi|224540643|ref|ZP_03681182.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus DSM 14838] gi|224517715|gb|EEF86820.1| hypothetical protein BACCELL_05557 [Bacteroides cellulosilyticus DSM 14838] Length = 299 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 16/239 (6%) Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 + + Q Q Q E S + + + L S D N + N Sbjct: 44 LDKSYQDAQIQLAEYRTQSKSLEDRLSEARKNNQELRNSYATLQGSLDKSLQQNSQGNIN 103 Query: 175 LPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILIS 227 + L E + + K+L D K +++ L+ ++ +K V + + + IS Sbjct: 104 ISKLVDEINASNRYIKQLVDAKSKSDSLNVMLTNNLTRSLSREELKEVDVKVLKGVVYIS 163 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNW 285 + D ++ S L KI +++ + + G+TD P R R+NW Sbjct: 164 LADNM---LYKSGSYEINERAGETLSKIAKIITDYKDYEVLVEGNTDNVPISRTNIRNNW 220 Query: 286 RLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 LS RA S Q L K GV R+S +G + +D NRR I+V R Sbjct: 221 DLSALRASSVVQELQNKYGVDPKRLSA-AGRGEYNPITDNDSELGKQRNRRTQIIVTPR 278 >gi|332161223|ref|YP_004297800.1| putative OmpA family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605118|emb|CBY26616.1| outer membrane protein ImpK/VasF, OmpA/MotB domain [Yersinia enterocolitica subsp. palearctica Y11] gi|325665453|gb|ADZ42097.1| putative OmpA family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860429|emb|CBX70737.1| hypothetical protein YEW_EP20110 [Yersinia enterocolitica W22703] Length = 458 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 16/161 (9%) Query: 190 KRLQDLAKKI--------SSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKS 240 KR++ L + + L+ L+ D I K ++ + T + + + MF Sbjct: 300 KRMEALQRPVIVPTVAVQKLRLAILLKDEIAKQLVSVDETSSHSKVIF---KGDTMFQVG 356 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVL 299 S PE + V++++ + + + I GHTD+ P + +N LS RA + + + Sbjct: 357 SDKVRPEIMSVIERVAQEVHRVQGAVLIIGHTDSMPINKPGFPNNQVLSEKRAANVARFM 416 Query: 300 MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 K+G+ D+I + G + ++D S NRR++I V Sbjct: 417 EKAGIPTDKI-QFEGKGDTQPVSSNDDAAGRSQNRRVEIFV 456 >gi|14331084|emb|CAC40971.1| hypothetical protein [Vibrio pommerensis] Length = 378 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +F+ S+ P ++ LQ + L E V+ I GHTD+ + N RLS R Sbjct: 259 GEALFETGSTSLSPSLMLQLQPLLARLKQYPETVVEISGHTDS---KGSDTLNQRLSEQR 315 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 A S L+ GV +RI+++ G+ ++D + NRR++I+ Sbjct: 316 AQSVANYLISKGVDPERITRVVGYGESLPVASNDTESGRAQNRRVEIV 363 >gi|220935429|ref|YP_002514328.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996739|gb|ACL73341.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 427 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 95/289 (32%), Gaps = 21/289 (7%) Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 ++L + + E + S+ D S ++ + + Sbjct: 132 DALRRLREDLESQVGRLASELEESQASAGQLRDRSRALEARLAETQETTLLAQREIEARE 191 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + ++ + ++ + + + ++ L + Sbjct: 192 IRIQDLAAGIEERDRALVEERSLTADAQARVDALRRQMQDLEQQLARLNETLRAREETIE 251 Query: 187 KRKKRLQDLAKKISSTLSGLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMF 237 ++ + DL ++++ L+ V + ++ VL + I+ ++ F Sbjct: 252 AQQVEIADLGERLNLALAEEVRELSRYRSEFFGRLREVLSDVEDIQIVGDRFRFQSELFF 311 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIA-RDNWRLS 288 + +S+ PE L ++ + I + GHTD P R NW LS Sbjct: 312 ETASADIGPEGRERLDRVARTIREIDARIPGDIGWVLMVEGHTDRRPIRTEQFPSNWELS 371 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335 RA S L+ GV+ R++ +GF + A + NRRI+ Sbjct: 372 SARAQSIVNYLISRGVAPRRLAA-AGFGEYHPLDAGSTEAAFSRNRRIE 419 >gi|301309047|ref|ZP_07214992.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3] gi|300833073|gb|EFK63698.1| outer membrane protein, OmpA family [Bacteroides sp. 20_3] Length = 277 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 +D ++ N + K L ++ L + + I+ + A N Sbjct: 64 RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 123 Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L + + +L +++ ++ + +F S+ L K+ EVL Sbjct: 124 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 183 Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 + + I GHTD+ P +DNW LS+ RA S ++L K GV+ +I + G Sbjct: 184 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 242 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ S NRR +I++ + Sbjct: 243 FMPVADNETADGRSKNRRTEIIMAPK 268 >gi|238757108|ref|ZP_04618295.1| Type VI secretion system OmpA/MotB family protein [Yersinia aldovae ATCC 35236] gi|238704486|gb|EEP97016.1| Type VI secretion system OmpA/MotB family protein [Yersinia aldovae ATCC 35236] Length = 438 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 202 TLSGLVADNIVKGVL--FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ L+ D I K ++ ETT +I + MF S PE + V++++ + + Sbjct: 300 RLTILLKDEIAKQLVSVDETTSRSKVI----FKGDTMFQVGSDKVRPEIMSVIERVAQEV 355 Query: 260 AHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I GHTD+ P + +N LS RA + + + K+G+ D+I + G Sbjct: 356 HRVQGAVLIIGHTDSMPINKPGFPNNQVLSEKRAANVARFMEKAGIPTDKI-RFEGKGDA 414 Query: 319 RLKIASD--PMNSANRRIDILV 338 + ++D S NRR++I V Sbjct: 415 QPVSSNDDAAGRSQNRRVEIFV 436 >gi|311746464|ref|ZP_07720249.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1] gi|126575359|gb|EAZ79691.1| putative flagellar motor protein MotB [Algoriphagus sp. PR1] Length = 282 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 116/272 (42%), Gaps = 11/272 (4%) Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 ++T G + + +++ ++ + T+ + + + ++K Y + Sbjct: 6 IITGILGASMMVSCVSKKKYTELESNLFKTQTELANTNQEKAELEEKMAIIEARVAEYNN 65 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + L+ ++ D+ ST + K+ ++ N L + + K+ + + +L Sbjct: 66 RINSLRAVNDELSGENASLYDIQGSTIMSKNSKEKMNETLAKVDQAKLAEAQTLEDSVNL 125 Query: 196 AKK--ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 A + + ++ D V + +T ++IS+ D +F+ S + +LQ Sbjct: 126 AVEYNLKQNITETTVDGEEDDVQIDIDQTVVMISVSD---KLLFNTGSYRINKKADPLLQ 182 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRIS 310 K+ EV+ + I GHTD +DNW LS+ RA S + L ++ V+ +++ Sbjct: 183 KLAEVINAEPSLQVMIEGHTDPRSISTGVLQDNWDLSVKRATSIVRKLQENYSVAPEKMI 242 Query: 311 KISGFAHHRLKIASD-PMN-SANRRIDILVED 340 +G + + + +D P N + NRR I++ Sbjct: 243 A-AGRSSYMPLVENDTPENMAINRRTRIVLIP 273 >gi|74055057|gb|AAZ95862.1| PomB [Aeromonas hydrophila] Length = 303 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 13/183 (7%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK---KISSTLSGLVADNIVKGVLFE 218 ++ + + E+ LP S I + K+ LAK ++ ++ LV +VK Sbjct: 80 EVSAAPSVLESALLPSPSLAPISGVPIKQDGMTLAKIDTQLKESMGTLVDAGVVK---LT 136 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 + + + + +F S+ VL + ++L + +RG+TD Sbjct: 137 LDDNWLTVELS---SGLLFGSGSAFMSTNADPVLNTLSDILKPVDNYVRVRGYTDNQQIN 193 Query: 279 N-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 N I R NW LS RA + VL+ G++ R+ + +D NR++ Sbjct: 194 NEIFRSNWTLSAARAEAVLTVLIAKGIAPQRL-AYEAYGEFSPFAGNDSEQGRLQNRKVV 252 Query: 336 ILV 338 + + Sbjct: 253 VAI 255 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 1/136 (0%) Query: 17 IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 ++K+ + +L W + YAD+MT++ A F+V++ + + D +A+ Sbjct: 1 MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMTQAFNV 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S G+ + Q +++ S+ E S L S KQ I Sbjct: 61 MQPRSDGLLEGQGKSLLNNEVSAAPSVLESALLPSPSLAPISGVPIKQDGMTLAKIDTQL 120 Query: 136 NSQQSEHCKNSLTRDS 151 + + + Sbjct: 121 KESMGTLVDAGVVKLT 136 >gi|283853198|ref|ZP_06370451.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283571456|gb|EFC19463.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 245 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D ++ K +K+ + + K+R+ +++ V+ ++GV Sbjct: 55 DSVQNALGSKGKSKQAAPVSGQEMSALVEQARIKQRIIGEQRRVFENFRSFVSQKGLEGV 114 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274 L T +G I+I +F K E V L+ + E L + E I+IRG TD Sbjct: 115 LGATLESG-TITIS-LPTGVLFPKDGVDLTDEGKVRLRTLHEFLIKTAGERINIRGFTDD 172 Query: 275 SPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 P + RDNW +S RA + + ++ G++ +R++ +G A + + Sbjct: 173 LPPAAGSRFRDNWEVSSLRAVAVLRYMLSLGMAPNRLTA-TGLADLEPLYPNTTPEHRAR 231 Query: 331 NRRIDILVED 340 N+R++ ++E Sbjct: 232 NQRVEFVLER 241 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 7/159 (4%) Query: 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 D W AD +LM FF++++ ++ D F+ L SKG Sbjct: 13 DEAEAPSEWLTTLADMSMLLMTFFILLFSMSTLDVKKF---SDSFDSVQNAL--GSKGKS 67 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + P S Q L I + + + + + + L + +S Sbjct: 68 KQAAP--VSGQEMSALVEQARIKQRIIGEQRRVFENFRSFVSQKGLEGVLGATLESGTIT 125 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 SL KD TD K + + FL + E+I Sbjct: 126 ISLPTGVLFPKDGVDLTDEGKVRLRTLHEFLIKTAGERI 164 >gi|119478742|ref|ZP_01618600.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143] gi|119448371|gb|EAW29625.1| Flagellar motor protein [marine gamma proteobacterium HTCC2143] Length = 130 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +LA ISI+GHTD +P + R NW LS RA S L + + R ++SGFA Sbjct: 1 MLATKKGAISIQGHTDNNPIKTTRFRSNWELSTSRAVSVAHALFEGNILNPRRVEVSGFA 60 Query: 317 HHRLKIASDP--MNSANRRIDILVEDRQG 343 R ++D + NRR++I+++ G Sbjct: 61 ETRPLSSNDTVEGRAKNRRVEIVIQQGLG 89 >gi|262384794|ref|ZP_06077926.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262293510|gb|EEY81446.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 277 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 10/207 (4%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + ++ + ++ + L + ++ + L + + + + Sbjct: 67 TTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNEKVQNLL 126 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 SS L+ N + + +++ D +F S+ L K+ EVL Sbjct: 127 SSVKDALLGFN-SDELTVTEKNGKVYVAMSD---KLLFQSGSAKVDKRGKEALAKLAEVL 182 Query: 260 A-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 + + I GHTD+ P +DNW LS+ RA S ++L K GV+ +I + G Sbjct: 183 NKQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRG 241 Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341 ++ S NRR +I++ + Sbjct: 242 EFMPVADNETADGRSKNRRTEIIMAPK 268 >gi|91217489|ref|ZP_01254448.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] gi|91184374|gb|EAS70758.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] Length = 280 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 15/237 (6%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 + ++ K + + N+ S + T +S L + D K Sbjct: 32 TTQDELKTAEMKLSACEDEKNNMMSSYESQIKTLESTNSALLSTTGDFATISKKGAENLE 91 Query: 176 PPLSKEKILAMKRKKRLQDLAKK------ISSTLSGLVADNIVKGVLFETTRTGILISII 229 L K ++ K + KK + ++L G + + + + + + +SI Sbjct: 92 RSLESMKEKDLQIKTMRDAINKKDSVTLALVTSLKGALGNINDEDIQINVEKGVVFVSIS 151 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRL 287 D +F E VL K+ V+ + GHTD P R DNW L Sbjct: 152 D---KLLFGAGQFKVTAEAKRVLGKVATVVNDKKDFEFMVEGHTDNDPISRTNIEDNWDL 208 Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 S RA + ++L V R++ +G + +D S NRR I++ + Sbjct: 209 STKRATAVVRILQDEYDVDPKRMTA-AGRGEYIPVANNDTEAGQSKNRRTRIVILPK 264 >gi|255322336|ref|ZP_05363482.1| OmpA/MotB [Campylobacter showae RM3277] gi|255300709|gb|EET79980.1| OmpA/MotB [Campylobacter showae RM3277] Length = 256 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 15/196 (7%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEK-----ILAMKRKKRLQDLAKKISSTLSGL 206 + K L ++ E P +S E+ + K + ++ ++ +++ L Sbjct: 43 DAKKLEAAIGSLSGALGVLEGGAKPDVSAEQNQDDHATSNKERTGVKSNFEQTLRSINEL 102 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHST-- 263 + + V FE + +G +I + +F K S+ + ++ L++I V+A Sbjct: 103 LHASGSPEVTFEESESGFVIRL---PANLLFAKDSAKLQNDDALLFLKRIAMVIAKLPPD 159 Query: 264 EVISIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V ++ GHTD+ P +DNW+LS RA S L+K GV +++ S A + Sbjct: 160 VVANVIGHTDSEQPASTEFKDNWQLSSARAISVVSELIKDGVDPKKLTA-SAKAEFEPFV 218 Query: 323 AS--DPMNSANRRIDI 336 + + NRR++I Sbjct: 219 TNFTEQGREKNRRVEI 234 >gi|78777214|ref|YP_393529.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251] gi|78497754|gb|ABB44294.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251] Length = 240 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 13/208 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +S ++ ++ S L E S + + + E + R Sbjct: 15 SSMDAKKVSEAIGSLSGAMSVLEGGIKTEVSKRRIQESTPIESTDETSEQVNRISAALKE 74 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254 +I + V E + G +I + + +F S++ ++++ L++ Sbjct: 75 MNEIQE--AQASTQGSAAVVSLEEAQDGFVIEL---PASLLFKPGSAVIQNEDSLLFLKR 129 Query: 255 IGEVLAHSTEV--ISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + ++ +S+ GHTD + +DNW LS RA S Q L+ GV RIS Sbjct: 130 VALIIGELPNETTLSVCGHTDDQGPSVKGPYKDNWELSSARAISVLQELLLDGVDPKRIS 189 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDI 336 +G+A K + + NRR+++ Sbjct: 190 A-AGYAEFSPKATNATESGREQNRRVEL 216 >gi|77165507|ref|YP_344032.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|76883821|gb|ABA58502.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] Length = 286 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 25/279 (8%) Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + +F+ F D + Q + D ++ ++ + K + + Sbjct: 16 VLGFFSVFLVAACAPPTKPVDLERADAAIEQAQADSNVAQYAPVRLDEAKEALQRAQVAW 75 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + E+ + ++ + + K++ +E L + + + Sbjct: 76 EEDESVEEVEHLAYLAQQRAAIAEVAAADKAAQAE----IKNLGQERQQMLMDVHELEAR 131 Query: 185 AMKRKKRLQDL-AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 K + ++ ++ A K+ L+ L A+ T G ++++ D +F+ S+ Sbjct: 132 QAKEQAKMAEIRADKLEKRLAELNAEK---------TERGYVLTLGD----ILFEVDSAE 178 Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + L ++ L + + + GHTD++ A N LS RA S Y L+ + Sbjct: 179 LTSGGMQNLFRLVTFLKEYPDREVVVEGHTDST---GSAVYNMELSQRRADSVYLFLVNN 235 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 G++ DRI G+ ++ NRR++I++ Sbjct: 236 GIAPDRIVA-HGYGQGYPVAPNNTTAGRQKNRRVEIVIL 273 >gi|188592172|ref|YP_001796770.1| hypothetical protein RALTA_B0336 [Cupriavidus taiwanensis LMG 19424] gi|170938546|emb|CAP63533.1| Putative transmembrane protein, OmpA/MotB motif [Cupriavidus taiwanensis LMG 19424] Length = 215 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ + + L+G +A T I I + + Sbjct: 43 ELSARLEAEVKQRQEEAQRRETLEKALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S+ PE +L+ + + L+ E++ + G TD R R DNW LS Sbjct: 93 FALNSAELQPEGRDLLRSLAQPLSAYLRSRDEILMVSGFTDDQQVREGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A + NRR++I Sbjct: 153 QRALTVTRTLIDAGIPPSSVFSAA-FGSQQPVTPNADAASRAKNRRVEI 200 >gi|156936052|ref|YP_001439968.1| hypothetical protein ESA_03946 [Cronobacter sakazakii ATCC BAA-894] gi|156534306|gb|ABU79132.1| hypothetical protein ESA_03946 [Cronobacter sakazakii ATCC BAA-894] Length = 411 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 8/176 (4%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + + L + + + + ++ +++A ++ L G + I G+ Sbjct: 224 LGDNTSPVLAKIYQTPLPEVTVQQPAREVAPVLN--LRGFLRPEIEAGL-VAVRDEADR- 279 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +S++ V+ ++ + + + + I + G++D P R+ N+ Sbjct: 280 SVVILKGDGLFASASTVVRGRYEPVIDRVAQAMNNVSGKILVVGYSDNVPIRSARFASNY 339 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LSL RA S ++L +R+ G ++ + NRR++I + Sbjct: 340 ELSLARAESVQKMLQAHLADPNRVKA-QGRGEMDPIAPNNTPENRARNRRVEITLL 394 >gi|154173933|ref|YP_001408144.1| OmpA/MotB [Campylobacter curvus 525.92] gi|153793024|gb|EAU00162.2| OmpA/MotB [Campylobacter curvus 525.92] Length = 249 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 12/209 (5%) Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 S + + + + + + +E+ + K K + + + Sbjct: 24 SMATMDAKKVEAAVGSLAGALSVLEGGARPDNQDDQESELEKQIKKTKGQSTSSQGEFSE 83 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQ 253 L+ I ++ L++ + + + + G +I + + +F++ + + + L+ Sbjct: 84 LSATIKK-INELLSASGAPEISIDESEDGFIIRL---PSALLFERGKAQIENDDARLFLK 139 Query: 254 KIGEVLAHS--TEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +I V+A I I GHTD +I +DNW+LS RA S + ++ +GV R+ Sbjct: 140 RIAMVIAKLTPDVNIDIVGHTDDQRPDMNSIFKDNWQLSTARAISVVEEMVANGVDARRL 199 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDI 336 SG A + ++ + N R++I Sbjct: 200 IA-SGRASYDPFASNQTPEGRAKNNRVEI 227 >gi|114706609|ref|ZP_01439510.1| flagellar motor protein [Fulvimarina pelagi HTCC2506] gi|114538001|gb|EAU41124.1| flagellar motor protein [Fulvimarina pelagi HTCC2506] Length = 344 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 108/341 (31%), Gaps = 18/341 (5%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 + + + + + + + +M V + ++ + + Sbjct: 5 RNRRSAGGSAEYWPGFVDALSTLLLAIMFLLSVFVLAQFILSREISGQDEALDRLNGQIA 64 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 ++ + E++ + S L ++ + + N Sbjct: 65 ELTQLLALERSNAQDSEDEIASLRASLGQLEDERSRLQSALDSGSGSAAAANATISALQD 124 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---KRLQD 194 E S S+ + + L + I E+ +++ K +RL Sbjct: 125 NLEEEESISQRARSQVELLNQQLSALRQQIGALESALEASEERDQESQTKIADLGRRLNV 184 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVL 252 + L+ +D + R I I ++ +F S+ L Sbjct: 185 ALAQRVQELNRYRSDFFGRLREILADRENIRIVGDRFVFQSEVLFPSGSADLQTAGTDEL 244 Query: 253 QKIGEVL--------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS 302 ++ + + ++ + GHTD P + DNW LS+ RA S + L+ Sbjct: 245 DQMASAIRDLAREIPSDINWIVRVDGHTDNVPLSGTGQFDDNWELSVARASSVVKYLISQ 304 Query: 303 GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 GV + ++ +GF + ++ + NRRI+ + +R Sbjct: 305 GVQAEHLAA-TGFGEFQPIEEGSTPEVRRRNRRIEFKLTER 344 >gi|295132150|ref|YP_003582826.1| thrombospondin repeat-containing OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294980165|gb|ADF50630.1| thrombospondin repeat-containing OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 470 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 91/268 (33%), Gaps = 25/268 (9%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + G+ + P+ D D + E++ Sbjct: 218 PETPGLPEFNGCPDSDGDGIQDSMDDCPNEAGLAEFNGCPDTDGDGVPDPEDDCPETPGL 277 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + C ++ +D C + EEN P + + + ++A Sbjct: 278 AELNGCPDADGDGIPDNEDECP-----EEAGPEENNGCPYEDTDGDGVIDPEDDCPEVA- 331 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 G VA+N E + + NT +FD + + E+ L I E Sbjct: 332 -------GTVANNGCPEPTVEVINE-----LNEYSNTVLFDFNKATIRSESEKALNSIIE 379 Query: 258 VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ + I GHTD+ N +LS +RA S Q L+ G+ +R++ G+ Sbjct: 380 IMEEYPNTVFHIGGHTDSV---GSDEYNLKLSKERAASVRQFLVDGGIPANRLTS-EGYG 435 Query: 317 HHRLK--IASDPMNSANRRIDILVEDRQ 342 R +++ NRR++I ++ + Sbjct: 436 ESRPIATNSTEAGRQENRRVEISLDKDK 463 >gi|150006781|ref|YP_001301524.1| putative flagellar motor protein MotB [Parabacteroides distasonis ATCC 8503] gi|149935205|gb|ABR41902.1| putative flagellar motor protein MotB [Parabacteroides distasonis ATCC 8503] Length = 277 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 +D ++ N + K L ++ L + + I+ + A N Sbjct: 64 RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 123 Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L + + +L +++ ++ + +F S+ L K+ EVL Sbjct: 124 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 183 Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 + + I GHTD+ P +DNW LS+ RA S ++L K GV+ +I + G Sbjct: 184 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 242 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ S NRR +I++ + Sbjct: 243 FMPVADNETADGRSKNRRTEIIMAPK 268 >gi|260427879|ref|ZP_05781858.1| OmpA/MotB domain protein [Citreicella sp. SE45] gi|260422371|gb|EEX15622.1| OmpA/MotB domain protein [Citreicella sp. SE45] Length = 627 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 16/246 (6%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 + + G Q+ + + S + + + +++ E Sbjct: 383 TEGRAGEAEQRAGAAERQTELLNQQVSALRTQLSQLQGLLDDAKERDVDAQVQLQNLGSE 442 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--I 228 N L ++ E+ + ++ + + + L ++ + + G+ I Sbjct: 443 LNAALARVAAEERRRRQLEEAERQRLEDQAKDLERYRSEFFGRLREVIGNQEGVRIEGDR 502 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNI 280 + +F + + + KI +L + +I + GHTD P R Sbjct: 503 FVFSSEVLFAPGEAELSRSGQMEIAKIASILRNVMADIPEGLDWIIRVDGHTDDIPLRPG 562 Query: 281 AR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 AR DNW LS RA S + L+ G+ DR+S +GF ++ SD ++ NRRI+ Sbjct: 563 ARFSDNWELSQARALSVVRYLVDFLGIPPDRLSA-NGFGQYQPIDPSDTADARAQNRRIE 621 Query: 336 ILVEDR 341 + + +R Sbjct: 622 LKLTER 627 >gi|298377743|ref|ZP_06987694.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19] gi|298265446|gb|EFI07108.1| flagellar motor protein MotB [Bacteroides sp. 3_1_19] Length = 280 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 20/206 (9%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 +D ++ N + K L ++ L + + I+ + A N Sbjct: 67 RDTTTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNAKVQ 126 Query: 215 VLFETTRTGIL------ISIIDQR--------NTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L + + +L +++ ++ + +F S+ L K+ EVL Sbjct: 127 NLLSSVKDALLGFNSDELTVTEKNGKVYVAMSDKLLFQSGSAKVDKRGKEALAKLAEVLN 186 Query: 261 -HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAH 317 + + I GHTD+ P +DNW LS+ RA S ++L K GV+ +I + G Sbjct: 187 KQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRGE 245 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 ++ S NRR +I++ + Sbjct: 246 FMPVADNETADGRSKNRRTEIIMAPK 271 >gi|296101897|ref|YP_003612043.1| type VI secretion system protein ImpK [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056356|gb|ADF61094.1| type VI secretion system protein ImpK [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 412 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 8/176 (4%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + N L + + ++ ++ + L ++ L G + I G+ Sbjct: 225 LGDNTNPVLAKIYQSQLPETTIQQPARQLPAVLN--LRGFLKPEIDAGL-VAVKDEADR- 280 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +S++ V+ +I + + + + I + G++D P R+ N+ Sbjct: 281 SVVILKGDGLFASASTVVRDRYEPVINRIAQAMNNVSGKILVVGYSDNVPIRSARFASNY 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LSLDRA S ++L S DR+ G ++ + NRR++I + Sbjct: 341 ELSLDRARSVQKMLQGSLSQPDRVKA-EGRGEINPVAPNNTPENRARNRRVEITLL 395 >gi|325982315|ref|YP_004294717.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531834|gb|ADZ26555.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 277 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 12/193 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS-STLSGLVADNIVK 213 + + + + K+ E + +++IL R ++ ++++ L ++ Sbjct: 87 QQVAIAQETAKAKIAESVVANADVERDRILLEARTAEAEESKQQVAFDQLLIAQQQKELE 146 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 + + T G++I++ D +F + + + +QK+ + L T + I GHT Sbjct: 147 ELNAKKTERGLVITLND----VLFRTNMAQLEANGVRTVQKLADFLRQYTQHKVLIEGHT 202 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D + N LS RA + L+ SG+S DR++ G+ +D Sbjct: 203 DNT---GSHHYNQELSERRANAVKMALLNSGISNDRVAS-RGYGETLPIAGNDTAEHRQL 258 Query: 331 NRRIDILVEDRQG 343 NRR++I++ D G Sbjct: 259 NRRVEIILSDENG 271 >gi|254433641|ref|ZP_05047149.1| OmpA family protein [Nitrosococcus oceani AFC27] gi|207089974|gb|EDZ67245.1| OmpA family protein [Nitrosococcus oceani AFC27] Length = 293 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 25/279 (8%) Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + +F+ F D + Q + D ++ ++ + K + + Sbjct: 23 VLGFFSVFLVAACAPPTKPVDLERADAAIEQAQADSNVAQYAPVRLDEAKEALQRAQVAW 82 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 + E+ + ++ + + K++ +E L + + + Sbjct: 83 EEDESVEEVEHLAYLAQQRAAIAEVAAADKAAQAE----IKNLGQERQQMLMDVHELEAR 138 Query: 185 AMKRKKRLQDL-AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 K + ++ ++ A K+ L+ L A+ T G ++++ D +F+ S+ Sbjct: 139 QAKEQAKMAEIRADKLEKRLAELNAEK---------TERGYVLTLGD----ILFEVDSAE 185 Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + L ++ L + + + GHTD++ A N LS RA S Y L+ + Sbjct: 186 LTSGGMQNLFRLVTFLKEYPDREVVVEGHTDST---GSAVYNMELSQRRADSVYLFLVNN 242 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 G++ DRI G+ ++ NRR++I++ Sbjct: 243 GIAPDRIVA-HGYGQGYPVAPNNTTAGRQKNRRVEIVIL 280 >gi|167921374|ref|ZP_02508465.1| hypothetical protein BpseBC_22683 [Burkholderia pseudomallei BCC215] Length = 396 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 6/218 (2%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 180 SQRGPVSVALSPHWQPGPRNRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 239 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 240 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 297 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKS 302 P +++KI +A +++RG+TD P ++ N LS +RA Q+L + Sbjct: 298 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQMLQSA 357 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 GV R+ + G + + NRR++I V Sbjct: 358 GVPASRLEAL-GKGGVEPIGDNRTPQGRALNRRVEITV 394 >gi|332882653|ref|ZP_08450265.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679453|gb|EGJ52438.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 290 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 N N+QQ H +LT ++KG + +LEKS+ L + + Sbjct: 63 KNQNELLKENNQQLIHNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAVTR 117 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + L + +L G++ + + V + + + I+I D+ +F S Sbjct: 118 RDSVNLA-----LVQSLKGVLGNLDDQDVDIKVEKGVVFINISDKM---LFSSGSYTISK 169 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKS-G 303 VL+K+ +V+ + + + GHTD + + RDNW LS+ RA +VL G Sbjct: 170 NAKNVLEKVAKVVKNKPDFEFMVEGHTDDVRIKKDCIRDNWDLSVMRATEIVRVLQNDFG 229 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++ +R++ +G +++ ++ + NRR I+V + Sbjct: 230 IAPERMTA-AGRSYYVPVASNTTAEGRAQNRRTRIVVLPK 268 >gi|291617923|ref|YP_003520665.1| YtxE [Pantoea ananatis LMG 20103] gi|291152953|gb|ADD77537.1| YtxE [Pantoea ananatis LMG 20103] gi|327394329|dbj|BAK11751.1| flagellar motor protein YtxE [Pantoea ananatis AJ13355] Length = 413 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 11/152 (7%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPETIV 250 +I + +K L G++ S++ + +F S+ Sbjct: 246 QIRNPAPPPPPSLNLKSFLKPEIDEGLVAVRDEADQSVVTLKGDGLFASGSTEVRGRYDA 305 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V+Q++ E + + + I + G++D P R+ N+ LSL RA S +L K R+ Sbjct: 306 VIQRVAEAMNNVSGKILVVGYSDNVPIRSARFASNYELSLARAQSVQTLLQKQLAKPSRV 365 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVE 339 G + + + NRR++I ++ Sbjct: 366 KA-EGRGETHPLVPNTSAENRARNRRVEITLQ 396 >gi|305665914|ref|YP_003862201.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170] gi|88710689|gb|EAR02921.1| Thrombospondin type 3 repeat:OmpA/MotB [Maribacter sp. HTCC2170] Length = 446 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 98/270 (36%), Gaps = 28/270 (10%) Query: 78 TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131 T GI+D+ + PE + + D +K+S GS + + Sbjct: 190 TDGDGIYDKDDACPEVAGLEAFNGCPDADGDGIEDSKDSCPNAAGSKEMNGCPDADGDGV 249 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189 ++ +E +L + D D EN P K+ + + Sbjct: 250 ADKDDACPNEAGTAALAGCPDADGDGVADKDDSCPNEAGPSENKGCPWTDKDGDSVLDKD 309 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + D+A +++ V + + K + D T +FD S E+ Sbjct: 310 DQCPDVAGTVANNGCPEVTEEVQK-------------QLNDYARTILFDTGKSSIKAEST 356 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 V+ I ++L+ ++ GHTD+ A+ N LS RA S L+ G+ R Sbjct: 357 SVMVDIIQILSEYPTAKFTVEGHTDSV---GSAKLNQTLSESRANSVRDFLIDKGIGSSR 413 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336 +S I G+ + ++ + NRR++I Sbjct: 414 LSAI-GYGEDKPIATNNTRSGRKQNRRVEI 442 >gi|213961761|ref|ZP_03390027.1| OmpA family protein [Capnocytophaga sputigena Capno] gi|213955550|gb|EEB66866.1| OmpA family protein [Capnocytophaga sputigena Capno] Length = 290 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 19/220 (8%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 N N+QQ + +LT ++KG + +LEKS+ L + + Sbjct: 63 KNQNDLLKENNQQLINNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAVTR 117 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + L + +L G++ + + V + + + I+I D+ +F S Sbjct: 118 RDSVNLA-----LVQSLKGVLGNLDDQDVDVKVEKGVVFINISDKM---LFSSGSYTISK 169 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS-G 303 VL+K+ +V+ + + + GHTD + RDNW LS+ RA +VL K G Sbjct: 170 NAKSVLEKVAKVVKNKPDFEFMVEGHTDNVNIKTGCIRDNWDLSVMRATEIVRVLQKDFG 229 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 V+ +R++ +G +++ ++ N NRR I+V + Sbjct: 230 VAPERMTA-AGRSYYVPLASNGDANGRALNRRTRIVVLPK 268 >gi|303248273|ref|ZP_07334535.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302490298|gb|EFL50210.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 246 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 8/182 (4%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 KS P + + ++R+ +++ V+ + GV+ T G Sbjct: 64 NKSKAITTGPIATPDMSTLVEQARIRQRIIGEQRRVYDQFRSYVSTKGLDGVVAATLEAG 123 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASP--FRNI 280 I+I +F K E L+ + + L + E I+IRG TD P + Sbjct: 124 -KITIGFPAG-VLFPKDGVDLTEEGKQRLRTVYDFLIKTAGERINIRGFTDNQPPGAGSR 181 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RDNW +S RA + + ++ G+ +R++ +G A +D + N+R++ ++ Sbjct: 182 FRDNWEVSSLRAVAVLRYMVSLGMPPNRLTA-TGLADLEPLYPNDTPAHRARNQRVEFVL 240 Query: 339 ED 340 E Sbjct: 241 ER 242 >gi|84514671|ref|ZP_01002035.1| flagellar motor protein [Loktanella vestfoldensis SKA53] gi|84511722|gb|EAQ08175.1| flagellar motor protein [Loktanella vestfoldensis SKA53] Length = 533 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 19/195 (9%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTG 223 +N + + L + RL+ A ++ + L + G L + Sbjct: 340 AQLNTALARVVSEERQRIALEEAERSRLEAEAARLQAEAENLERFRSDFFGQLRQVLEGQ 399 Query: 224 ILISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGH 271 I I R + +F+ + P+ + + +L +I + GH Sbjct: 400 DRIRIEGDRFVFSSEVLFEVGRADLSPQGRDEIANVAGILNDIADDIPAGIDWIIRVDGH 459 Query: 272 TDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN 328 TD +P R DNW LS RA S + ++ G+ R++ +GF ++ +D Sbjct: 460 TDDNPIAAGGRFADNWELSQARALSVVRFMVDDLGIPPMRLAA-NGFGEYQPLNTADTAQ 518 Query: 329 SA--NRRIDILVEDR 341 + NRRI++ + +R Sbjct: 519 ARAQNRRIELKLTER 533 >gi|255016489|ref|ZP_05288615.1| putative flagellar motor protein MotB [Bacteroides sp. 2_1_7] Length = 280 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 10/207 (4%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + ++ + ++ + L + ++ + L + + + + Sbjct: 70 TTMGRDIRNYQTMLNTNMGEQDKLNALLQQKMSELDERERTINELQDMMNAQNEKVQNLL 129 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 SS L+ N + + +++ D +F S+ L K+ EVL Sbjct: 130 SSVKDALLGFN-SDELTVTEKNGKVYVAMSD---KLLFQSGSARVDKRGKEALAKLAEVL 185 Query: 260 A-HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 + + I GHTD+ P +DNW LS+ RA S ++L K GV+ +I + G Sbjct: 186 NKQNDIDVYIEGHTDSKPINTAQFKDNWDLSVIRATSVVRILTKDYGVNPLQI-QPCGRG 244 Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341 ++ S NRR +I++ + Sbjct: 245 EFMPVADNETADGRSKNRRTEIIMAPK 271 >gi|238750197|ref|ZP_04611700.1| Type VI secretion system OmpA/MotB family protein [Yersinia rohdei ATCC 43380] gi|238711741|gb|EEQ03956.1| Type VI secretion system OmpA/MotB family protein [Yersinia rohdei ATCC 43380] Length = 457 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 10/175 (5%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 ++ E+ L ++ + + ++ + + +++ L +A +V + ETT +I Sbjct: 288 LSVPESDLLKRMTVLQRPVIAQRPAVVEQKLRLAVLLKDEIAKQLVS--VDETTSQSKVI 345 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNW 285 + MF S PE I V+ ++ + + + I GHTD+ P + +N Sbjct: 346 ----FKGDTMFQVGSDKVRPEIINVIDRVAQEVHRVQGAVLIVGHTDSMPINKPGFPNNQ 401 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 LS RA + ++ K+G+ D+I + G + + NRR++I V Sbjct: 402 VLSEKRAANVAHLMEKAGIPTDKI-RFEGKGDIQPVGSNGDAAGRAQNRRVEIFV 455 >gi|189468503|ref|ZP_03017288.1| hypothetical protein BACINT_04906 [Bacteroides intestinalis DSM 17393] gi|189436767|gb|EDV05752.1| hypothetical protein BACINT_04906 [Bacteroides intestinalis DSM 17393] Length = 299 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + + Q Q Q E S + + + L S D N + N Sbjct: 42 TALDKSYQDAQIQLAEYRTQSKSLEDRLNEARKNNQELRNSYATLQGSLDKSLQQNSQGN 101 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGIL 225 + L E + + K+L D K +++ L+ ++ +K V + + + Sbjct: 102 INISKLVDEINASNRYIKQLVDTKSKSDSLNVVLTNNLTRSLSREELKEVDVKVLKGVVY 161 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RD 283 IS+ D ++ S L KI +++ + + G+TD P R+ Sbjct: 162 ISLADNM---LYKSGSYEINERAGETLSKIAKIITDYKDYEVLVEGNTDNVPISRPNIRN 218 Query: 284 NWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 NW LS RA S Q L + GV R+S +G + +D NRR I++ Sbjct: 219 NWDLSALRASSVVQALQNQYGVDPKRLSA-AGRGEYNPLTDNDTELGKQRNRRTQIIITP 277 Query: 341 R 341 + Sbjct: 278 K 278 >gi|310765213|gb|ADP10163.1| OmpA family protein [Erwinia sp. Ejp617] Length = 413 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 11/151 (7%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPETIVV 251 I + A +K L G+++ S++ + +F +S+ V Sbjct: 247 IHNPAPPQPAAVNLKTFLKPEIEQGLVVVRDEADRSVVTLKGDGLFTSASTDVRGRYAEV 306 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ + + + I + G++D P R+ N+ LSL RA S + L + R+ Sbjct: 307 LDRVAAAMNNVSGRILVVGYSDNVPIRSARFASNYELSLARAQSVSEQLQQHLTQPQRVK 366 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVE 339 G ++ + NRR++I + Sbjct: 367 A-EGRGDSNPLAPNNSAGNRARNRRVEITLL 396 >gi|259907293|ref|YP_002647649.1| hypothetical protein EpC_06170 [Erwinia pyrifoliae Ep1/96] gi|224962915|emb|CAX54396.1| Type VI secretion system, OmpA/MotB [Erwinia pyrifoliae Ep1/96] gi|283477112|emb|CAY73012.1| putative type VI secretion system, core protein [Erwinia pyrifoliae DSM 12163] Length = 413 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 11/151 (7%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-------SIIDQRNTPMFDKSSSIPLPETIVV 251 I + A +K L G+++ S++ + +F +S+ V Sbjct: 247 IHNPAPPQPAAVNLKTFLKPEIEQGLVVVRDEADRSVVTLKGDGLFTSASTDVRGRYAEV 306 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ + + + I + G++D P R+ N+ LSL RA S + L + R+ Sbjct: 307 LDRVAAAMNNVSGRILVVGYSDNVPIRSARFASNYELSLARAQSVSEQLQQHLTQPQRVK 366 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVE 339 G ++ + NRR++I + Sbjct: 367 A-EGRGDSNPLAPNNSAGNRARNRRVEITLL 396 >gi|315223432|ref|ZP_07865289.1| OmpA family protein [Capnocytophaga ochracea F0287] gi|314946605|gb|EFS98596.1| OmpA family protein [Capnocytophaga ochracea F0287] Length = 290 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 19/222 (8%) Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 N N+QQ + +LT ++KG + +LEKS+ L + + Sbjct: 61 SMKNQNDLLKENNQQLINNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAV 115 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + L + +L G++ + + V + + I+I D+ +F S Sbjct: 116 TRRDSVNLA-----LVQSLKGVLGNLDDQDVDIRVEKGVVFINISDKM---LFSSGSYTI 167 Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS 302 VL+K+ +V+ + + + GHTD + RDNW LS+ RA +VL K Sbjct: 168 SKNAKSVLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKD 227 Query: 303 -GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 GV+ +R++ +G +++ ++ N NRR I+V + Sbjct: 228 FGVAPERMTA-AGRSYYVPLASNGDANGRALNRRTRIVVLPK 268 >gi|170693231|ref|ZP_02884391.1| type IV / VI secretion system protein, DotU family [Burkholderia graminis C4D1M] gi|170141761|gb|EDT09929.1| type IV / VI secretion system protein, DotU family [Burkholderia graminis C4D1M] Length = 446 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F + LP+ I +L+++ L + + GHTD P ++ +DN+ LS RA + Sbjct: 337 LFPSGGADLLPDEIPLLRRVASALNQVRGRVIVVGHTDDQPVHSLRFKDNFALSTARAQN 396 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI-ASD--PMNSANRRIDIL 337 VL G+ + R + +G + +D + NRR++IL Sbjct: 397 TLAVL-AQGLDDPRRLEANGAGSSQPIATPADLPANRARNRRVEIL 441 >gi|294626797|ref|ZP_06705390.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598913|gb|EFF43057.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 419 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ LS +++ + E + + + MF P+ V+ +I Sbjct: 277 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGVIAQIAA 331 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + GHTD P R++ DN+ LS RA + QVL + R+ +G Sbjct: 332 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEA-TGAG 390 Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342 + + + NRR++IL + + Sbjct: 391 DSQPIAQPVQLPANRARNRRVEILFQPGE 419 >gi|223040101|ref|ZP_03610381.1| OmpA/MotB [Campylobacter rectus RM3267] gi|222878578|gb|EEF13679.1| OmpA/MotB [Campylobacter rectus RM3267] Length = 256 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + + + K + ++ ++ +++ L+ + V FE + +G +I + Sbjct: 68 DAGAEQNQDDHATSNKERTGVKSNFEQTLRSINELLHASGSPEVTFEESESGFVIRL--- 124 Query: 232 RNTPMFDKSSSIPL-PETIVVLQKIGEVLAHST--EVISIRGHTDA-SPFRNIARDNWRL 287 +FDK S+ + ++ L++I V+A V ++ GHTD+ P +DNW+L Sbjct: 125 PANLLFDKDSARLQNDDALLFLKRIAMVIAKLPPDVVANVIGHTDSEQPGSAEFKDNWQL 184 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 S RA S L+K GV +++ S A + + NRR++I Sbjct: 185 SSARAISVVTELIKDGVDPKKLTA-SAKAEFEPFATNFTEQGREKNRRVEI 234 >gi|317153383|ref|YP_004121431.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943634|gb|ADU62685.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 254 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 8/253 (3%) Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 ++ ++ + + + D + F++ +E + Sbjct: 2 ARKAEEVVQRKPLREPPRDEGLPPWMATFADMMTLLLCFFVLLLSFAEQSEEKYRDALGS 61 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 K +L + + SKE + + +RL +L + + Sbjct: 62 LKGAFGVRELRTVSDDMAPFNTSQSSKELMAKISTDERLLLGVVMRIKSLMEDEDIKLKE 121 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 G R G+ I + +F ++ + VL K+ VL + +RGHTD Sbjct: 122 GTGVAADRDGV---IFSADSAMLFAPGTADLAADADTVLDKVVTVLKDYNLSLVVRGHTD 178 Query: 274 ASPFRNI-ARDNWRLSLDRAYSAY-QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329 P + NW LS RA A +L +SG+ R + G+A R + D Sbjct: 179 DRPISTLKFPSNWELSSARAAVALDYILRESGIGISRAKAV-GYADTRPAAPNDSDENRL 237 Query: 330 ANRRIDILVEDRQ 342 N+R++ + Q Sbjct: 238 KNQRVEFYLHMPQ 250 >gi|294666305|ref|ZP_06731554.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603907|gb|EFF47309.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 419 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ LS +++ + E + + + MF P+ V+ +I Sbjct: 277 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGVIAQIAA 331 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + GHTD P R++ DN+ LS RA + QVL + R+ I G Sbjct: 332 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEAI-GAG 390 Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342 + + + NRR++IL + + Sbjct: 391 DSQPIAQPVQLPANRARNRRVEILFQPGE 419 >gi|116620394|ref|YP_822550.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223556|gb|ABJ82265.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 545 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 9/233 (3%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 K + + +Q+++ Q + + +Q+E K + E++ Sbjct: 303 KARLADEQARMDQQRRAQAEADQRASETARRQAEQAKLEADNARASAEKAAADAARERAA 362 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + + R K+ A+ + L + + + + T G++I+ Sbjct: 363 ADAARLAAEQQQQAAMAEADRAKQGMQKAEAEKAELRERLRNQLNMILETRETARGLIIN 422 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 I D +FD + P L K+ +L I + GHTD+ + N + Sbjct: 423 ISD----VLFDFNKYTLKPGAREKLAKVSGILLAYPGLNIKVEGHTDS--IGSDEY-NQK 475 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 LS RA S L V D +S + G + + NRR++++V Sbjct: 476 LSESRASSVRDYLTSQNVPADSVSAVGLGKSDPVASNDTAAGRQRNRRVELVV 528 >gi|296126061|ref|YP_003633313.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563] gi|296017877|gb|ADG71114.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563] Length = 266 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 18/160 (11%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP--LPETIVVL 252 + + I ++ L A+ K V E G +IS+ + F+ +S+ + Sbjct: 102 MGRSIDKAVAVLEAEIKSKKVRVEEDERGFVISLGADQ---YFESASTNIIDSQNNVETF 158 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI------ARDNWRLSLDRAYSAYQVL----MKS 302 K+ +L+ I I GHTD+ +NW LS RA + L + Sbjct: 159 IKLASLLSGIPNEIRIEGHTDSGSIIPGSITEQKFGNNWGLSSARAMVILEKLFENDQTA 218 Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + ++ I+G+A R ++D + NRR+DI++ Sbjct: 219 KLDRNK-YSIAGYADTRPVASNDLPDGRALNRRVDIVIVR 257 Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 7/178 (3%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWII--NATDDDTKKAIEQYFNP-----FGK 74 D + W Y DF+T+++ FF+++ + +D + I F G Sbjct: 16 KADTPGPSAPLWLQTYGDFVTLVLTFFVMLLATMSTSVNDSAIQLIATAFQGSFGVMPGG 75 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 ++ SK ++ N S ++ +V + + + + + L Sbjct: 76 ATLSQSKLVYGGANADTLPSTDRGYSMGRSIDKAVAVLEAEIKSKKVRVEEDERGFVISL 135 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 Q E ++ + K L I E S I +++ Sbjct: 136 GADQYFESASTNIIDSQNNVETFIKLASLLSGIPNEIRIEGHTDSGSIIPGSITEQKF 193 >gi|325915795|ref|ZP_08178096.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas vesicatoria ATCC 35937] gi|325537992|gb|EGD09687.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas vesicatoria ATCC 35937] Length = 412 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRA 292 MF PE ++ +I + + + GHTD P R++ DN+ LS RA Sbjct: 301 AAMFASGGVEVEPEQRGLIAQIAAAIDQLPGRVIVVGHTDDVPVRSLRFADNYALSGARA 360 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILVEDRQ 342 + Q+L + R+ + G + + + NRR++IL + + Sbjct: 361 AAVAQLLRTHLATPGRVEAL-GAGDSQPVAQPVQLPANRARNRRVEILFQPGE 412 >gi|304408922|ref|ZP_07390543.1| type IV / VI secretion system protein, DotU family [Shewanella baltica OS183] gi|307302925|ref|ZP_07582680.1| type IV / VI secretion system protein, DotU family [Shewanella baltica BA175] gi|304352743|gb|EFM17140.1| type IV / VI secretion system protein, DotU family [Shewanella baltica OS183] gi|306913285|gb|EFN43707.1| type IV / VI secretion system protein, DotU family [Shewanella baltica BA175] Length = 436 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 +S + + +N P + + RLQ L L + +++ + Sbjct: 265 SQSDAVNRQMNSLIVDNTPQALQVSASTVHEGARLQQL-------LQTEIGMQLLEVIEL 317 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + I + +F + V+ KI L + I + G+TD P Sbjct: 318 ---PDRVRIRV---GLHHLFTTGGTDINEGFQPVIVKIARALEGTKGRILVNGYTDDQPI 371 Query: 278 -RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 + NW LSL RA + L R+ + G +D + NRR+ Sbjct: 372 FTSRYPSNWHLSLARANAMADSLAAGADLHGRL-QPEGRGEAEPVAPNDTPENRALNRRV 430 Query: 335 DILVE 339 +I + Sbjct: 431 EIDLL 435 >gi|224436415|ref|ZP_03657435.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818] gi|313142933|ref|ZP_07805126.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818] gi|313127964|gb|EFR45581.1| flagellar motor protein MotB [Helicobacter cinaedi CCUG 18818] Length = 250 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 11/170 (6%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P S + + + + SS + + +G + E G+ + + + Sbjct: 62 SPLPSNQDDINDSEVENESGAISQTSSVTTAEIQQMAEEGGILEQMEMGLSLRL---PSN 118 Query: 235 PMFDKSSSIPLPETIVV-LQKIGEVLAHST--EVISIRGHTD--ASPFRNIARDNWRLSL 289 F+ S+ + + LQ++ ++ I +RG+TD + P + +DN+ LS Sbjct: 119 LFFESGSAEINNSDVYLYLQRMTAIIKKLPDYVKIDVRGYTDNASLPIGSRYKDNYELSS 178 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 R+ + + L+K+G+S +RI SG+ H+ +D + N R++I Sbjct: 179 ARSLAVMKNLIKNGISPERI-SFSGYGEHQAVAPNDSTINRAKNNRVEIF 227 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-----P 71 + KK + P W + YADF+++L+A F+ +W I++T +A++ F Sbjct: 1 MAKKKKCPECPA-GEKWAVPYADFLSLLLALFIALWAISSTGSADSEALKTEFVKIFDFT 59 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 L + I D + E + ++ I + + + I + RL +N+ Sbjct: 60 LTSPLPSNQDDINDSEVENESGAISQTSSVTTAEIQQMAEEGGILEQMEMGLSLRLPSNL 119 Query: 132 FYLSNSQQ 139 F+ S S + Sbjct: 120 FFESGSAE 127 >gi|108763506|ref|YP_633737.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108467386|gb|ABF92571.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 2699 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 26/302 (8%) Query: 48 FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT 107 F ++ + + + +++ P + + + + D DE Sbjct: 2404 FRLLAGFSYSPEPSRE-------PKQVAPVDTDGDGILDIDDACPTEPEDKDGFQDEDGC 2456 Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD----- 162 + + G + + ++ G + D Sbjct: 2457 PDPDNDADGIPDTADTCPNEPETVNGFEDTDGCPDVAPPPPPVDTDGDGIMDPDDRCPND 2516 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E ++ P ++ + + + + I+ D + Sbjct: 2517 PEDKDGFQDEDGCPDPDNDRDGIPDAEDKCPNEPETINGFQDE---DGCPDKGKVKVLVD 2573 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI 280 G I I++ F + L + +L+++ VL + +V + I GHTD Sbjct: 2574 GERIVILE---KVYFATGKDVILARSHPLLKQVAAVLRANPQVELVRIEGHTDDQ---GN 2627 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 N LS RA + L+K G++E R+ + G+ + + NRR+ + Sbjct: 2628 DAKNLDLSQRRANNVRAFLVKEGIAEGRMEAV-GYGETKPVDTNKTAKGRENNRRVGFTI 2686 Query: 339 ED 340 Sbjct: 2687 LR 2688 >gi|302343736|ref|YP_003808265.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301640349|gb|ADK85671.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 260 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L G+V +N + + G+ +I+ +F S+ P + L ++ V+ Sbjct: 89 LRGMVFENRLDDQVRLLRSQGMRTVVINAD--MLFAPGSAKLSPNILPFLDEVAAVIKDR 146 Query: 263 TEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +S+ GHTD P+R +DNW LS RA S L+ GVS R++ G A + Sbjct: 147 AYPLSVYGHTDDEPWRGKGGQDNWTLSAQRALSVVAHLVSRGVSASRLAA-FGLAGTQPI 205 Query: 322 IASDP--MNSANRRIDIL 337 ++ N R+ ++ Sbjct: 206 ASNTTAEGRRQNNRVALV 223 >gi|162449977|ref|YP_001612344.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161160559|emb|CAN91864.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 274 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 18/234 (7%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q K + + Q++ K+ L + + + L N L + Sbjct: 33 QAKVREIEGLKTQLSAEQAQNKKAKSELDEAAARIEQLKSQLKAAGVDISNLNANLEQQA 92 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + +R ++L+D+ K+ L A + G+ ++I + +FD Sbjct: 93 RALEDFRRRAQQLEDIKKRFEVLRDKLQALTKL-GLSVTVRNNRMVIQL---PGDVLFDS 148 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 E +L K+ EV+ + + + GHTD +P +DNW LS+ RA Sbjct: 149 GRETLKKEGQEILLKVAEVIRNDSGLSARSFQVAGHTDNAPLAGGRFKDNWGLSVMRARE 208 Query: 295 AYQVLMK------SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L++ G+ +R S SG+ +D ANRR +++V Sbjct: 209 VLAFLLQPEDKGGGGLKPERWSA-SGYGDTDPVKPNDTPENKQANRRCELVVLP 261 >gi|157371239|ref|YP_001479228.1| hypothetical protein Spro_2999 [Serratia proteamaculans 568] gi|157323003|gb|ABV42100.1| OmpA/MotB domain protein [Serratia proteamaculans 568] Length = 406 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 +L + I +G++ + I+ + +FD +++ I V+ +I + Sbjct: 250 SLKSFLRKEIAEGLVVVRDEAQQSVVIL--KGDGLFDSAATTVRGNYIPVIDRIAAAMNG 307 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I + G++D P R+ NW LSL RA + L K + R+ G Sbjct: 308 VSGKILVTGYSDNLPIRSARFASNWELSLARADAVSAQLQKHLDNPQRVKA-EGRGESNP 366 Query: 321 KIASDP--MNSANRRIDILVE 339 ++ + NRR++I + Sbjct: 367 VAPNNSKVNRALNRRVEITLL 387 >gi|297569175|ref|YP_003690519.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925090|gb|ADH85900.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 251 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 16/165 (9%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + + + ++ +Q L +++ V ++ V R++ F Sbjct: 82 ETVPFEVREPIQQLFRELEDAGLVTVEEDEAGEVTVRI------------RDSVAFAFGR 129 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVL 299 + + +L ++GE+L S + + GHTD P R A NW LS R+ + + L Sbjct: 130 ADLKEDFKALLDQLGEILVTSQATMVVEGHTDNVPMRPGAPFSSNWALSAARSVAVVEYL 189 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ +A R +D +ANRR++ + + Sbjct: 190 LEHYEIPRDRLAAEAYADSRPVAPNDTAEGRAANRRVEFRIRPGE 234 >gi|300727657|ref|ZP_07061045.1| OmpA family protein [Prevotella bryantii B14] gi|299775083|gb|EFI71687.1| OmpA family protein [Prevotella bryantii B14] Length = 286 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 15/244 (6%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 +N G+ K+ N Q ++ K+ + S K L + +I Sbjct: 31 QNENRELTGNYQNAKEQLAAANARVTSLEDQLAQSKKDYASLQSSLDKSLTNANSNNINI 90 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 +K + + L + K L +++ L+ ++ + +K V + + + IS Sbjct: 91 SKLVDQINESNQYIRHLVEVKSKS-DSLNMVLTNNLTRSLSKDEMKEVDVQVLKGVVYIS 149 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA----- 281 + D ++ S L KI +++ + I G+TD P A Sbjct: 150 LADNM---LYKSGSYEVNDRAEQTLSKIAKIIKDYKDYDVLIEGNTDNVPVNTKAVSMKN 206 Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 R+NW LS RA S Q L G++ R++ G + +D NRR I+ Sbjct: 207 IRNNWDLSALRASSVVQYLQDHYGINPKRLTA-GGRGEYNPIATNDTELGKQRNRRTQII 265 Query: 338 VEDR 341 + + Sbjct: 266 ITPK 269 >gi|78356582|ref|YP_388031.1| motB protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218987|gb|ABB38336.1| motB protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 245 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 + +++ +K+L + +K+ S + + V+GV+ G+ I+I +F+K+S Sbjct: 82 LESVRLQKQLIEAQRKVYSDVRTFLNRKGVEGVIGAVFDEGV-ITIKVPAG-VLFEKNSV 139 Query: 243 IPLPETIVVLQKIGEV-LAHSTEVISIRGHTD-ASPFRNIA-RDNWRLSLDRAYSAYQVL 299 + + +L+ + + L + I+IRG+TD + P RDNW +S RA + + Sbjct: 140 DISADGLSMLEGLNDFFLKKKDQSINIRGYTDDSVPAAGSRFRDNWEISALRAVNVLRFF 199 Query: 300 MKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 +KSG+ R++ +G + + + NRR++ ++E R G Sbjct: 200 LKSGIEPGRLTA-TGLGDLDPLFPNTSEENRAKNRRVEFVLERRVG 244 >gi|78049766|ref|YP_365941.1| hypothetical protein XCV4210 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038196|emb|CAJ25941.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 418 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ LS +++ + E + + + MF P+ ++ +I Sbjct: 276 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGLIAQIAA 330 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + GHTD P R++ DN+ LS RA + QVL + R+ I G Sbjct: 331 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVDAI-GAG 389 Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342 + + + NRR++IL + + Sbjct: 390 DSQPIARPVQLPANRARNRRVEILFQPGE 418 >gi|307726202|ref|YP_003909415.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1003] gi|307586727|gb|ADN60124.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1003] Length = 445 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYS 294 +F + P+ I +L+++ L + + GHTD P ++ +DN+ LS RA + Sbjct: 336 LFPSGGADLAPDEIPLLRRVASALNQVRGRVIVVGHTDDQPVHSLRFKDNFALSTARAQN 395 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI-ASD--PMNSANRRIDIL 337 VL G+ + R + +G + +D + NRR++IL Sbjct: 396 TLAVL-AQGLDDPRRLEANGAGSSQPVATPADLPANRARNRRVEIL 440 >gi|90021170|ref|YP_526997.1| hypothetical protein Sde_1523 [Saccharophagus degradans 2-40] gi|89950770|gb|ABD80785.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 469 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291 N +F + P +L KI + L I + GHTD R NW LSL R Sbjct: 348 NQELFTSGNINITPSFEPILDKIAKALEAIPGRIIVSGHTDNESIRTPRYPSNWHLSLAR 407 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 A + L S + R+ G + +++D NRR+ I V QG Sbjct: 408 ASEVVKYLAASADLKSRLLP-EGRGANEPIMSNDTAAGRAHNRRVVIDVYYHQG 460 >gi|300870393|ref|YP_003785264.1| flagellar motor protein MotB [Brachyspira pilosicoli 95/1000] gi|300688092|gb|ADK30763.1| flagellar motor protein MotB [Brachyspira pilosicoli 95/1000] Length = 266 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 18/175 (10%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + A+ R + + + +S L ++ V G +I++ + F+ Sbjct: 87 GANVDALPAMDRGYSMGRSVDKAVSVLESEIKNNKVRVSEDERGFVITLGADQ---YFES 143 Query: 240 SSSIP--LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI------ARDNWRLSLDR 291 +S+ KI VL+ I I GHTD+ +NW LS R Sbjct: 144 ASTNIVNTQNNTETFIKIASVLSTLPNDIRIEGHTDSGAILEGSITEQWFGNNWGLSTAR 203 Query: 292 AYSAYQVL----MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 A + L + ++ ++G+A R ++D + NRR+DI+V Sbjct: 204 AIVVLEKLFESDQTGKLDINK-YSVAGYADTRPVASNDLPDGRALNRRVDIVVVR 257 >gi|239905906|ref|YP_002952645.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239795770|dbj|BAH74759.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 252 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 8/163 (4%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 + K K+R+ +++ V+ + GV+ T G I+I +F K Sbjct: 89 VEQAKLKQRIIGEQRRVYDQFRTYVSSKGLDGVVAATLEAG-KITIGFPAG-VLFPKDGV 146 Query: 243 IPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVL 299 E L+ + + L + E I+IRG TD P + RDNW +S RA + + + Sbjct: 147 DLTEEGKGKLRTLFDFLIKAAGERINIRGFTDNEPPGAGSRYRDNWEISSLRAVAVLRYM 206 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + G+ +R++ +G A +D + N+R++ ++E Sbjct: 207 VSLGMPPNRLTA-TGLADLEPLYPNDTPEHRARNQRVEFVLER 248 >gi|325925657|ref|ZP_08187038.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas perforans 91-118] gi|325543930|gb|EGD15332.1| Type VI secretion system OmpA/MotB domain protein [Xanthomonas perforans 91-118] Length = 425 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ LS +++ + E + + + MF P+ ++ +I Sbjct: 283 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVEPQQRGLIAQIAA 337 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + GHTD P R++ DN+ LS RA + QVL + R+ I G Sbjct: 338 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVDAI-GAG 396 Query: 317 HHRL---KIASDPMNSANRRIDILVEDRQ 342 + + + NRR++IL + + Sbjct: 397 DSQPIARPVQLPANRARNRRVEILFQPGE 425 >gi|313200972|ref|YP_004039630.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312440288|gb|ADQ84394.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 444 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 15/160 (9%) Query: 193 QDLAKKISSTLSGLVAD---NIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSI 243 ++L K+IS+ A + + + E + + + I+ + MF ++ Sbjct: 274 ENLQKRISAIYLMEPAHSSLRLSELLATEIAQGKVRVEEDSAHAIVVFKGDGMFSGGLAM 333 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN---IARDNWRLSLDRAYSAYQVLM 300 P T +++K+G +A + + GH+D ++N LS RA + QV+ Sbjct: 334 LSPATREIVEKVGRAVADVQGRVRVVGHSDNQKLSGKNPEFKNNQILSEKRAQAVVQVMT 393 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + GV RI ++G + ++ + NRR++I V Sbjct: 394 EMGVDNSRIE-VAGMGDTQPITSNSTASGRAKNRRVEIEV 432 >gi|167838594|ref|ZP_02465453.1| hypothetical protein Bpse38_18947 [Burkholderia thailandensis MSMB43] Length = 391 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 6/170 (3%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 Y L S + + R+ A L L+AD I G + + S + Sbjct: 223 KYALSMRSADVQQRIAAIARMTPPAAPAELRLKALLADEIAAGTV--SVDEDARHSSVTF 280 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 R MF ++ +++KI +A + + G+TD P ++ N LS + Sbjct: 281 RGDAMFPPGAAGVNATMGPLVKKIAAEIAKVPGKVIVLGYTDNQPIKSRQFASNEALSEE 340 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RA Q+L +GV R+ + G + + NRR++I V Sbjct: 341 RATQVMQMLQSAGVPASRLEAL-GKGDANPIGDNRTPQGRALNRRVEITV 389 >gi|110833095|ref|YP_691954.1| hypothetical protein ABO_0234 [Alcanivorax borkumensis SK2] gi|110646206|emb|CAL15682.1| Flagellar motor protein [Alcanivorax borkumensis SK2] Length = 213 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 18/175 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L + L ++ KRL + +++ L +AD + G T I I + + Sbjct: 41 QLELSQSLEQEKAKRLAEEQRRM--ALEEALADPLASG---RVTFNNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFR---NIARDNWRLSL 289 F +S PE +L + + L + +++ + G TDA P DNW LS Sbjct: 93 FQLNSDRLQPEGKALLSDLVKPLQVFLSQHDDMLMVSGFTDALPINRGNGRYADNWGLSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 RA + + L++ G+ D++ + F ++ +D + NRR+++ RQ Sbjct: 153 QRALTVTRTLIEQGMPADQVFAAA-FGDNQPVAPNDDADSRARNRRVELTTVPRQ 206 >gi|332519179|ref|ZP_08395646.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045027|gb|EGI81220.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 284 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 13/184 (7%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD----NIVKGVLFETTR 221 + N E L+K + + K L+D V D N + + Sbjct: 92 TSNLTERQMQETLAKVDPNKLSQAKTLKDSMNLAIQYNLNRVIDTSSLNEDEDITVSIDE 151 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 T ++ISI D+ +F+ S + +LQK+ +V+ + + GHTD+ Sbjct: 152 TVVMISISDKM---LFNTGSYRVSNKANDILQKLADVINSEPSIDVMVEGHTDSRTISTP 208 Query: 281 A-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +DNW LS+ RA S + L VS +++ SG + ++ A+D S NRR I Sbjct: 209 TLKDNWDLSVLRATSVVRKLQNEYSVSPEKLIA-SGRSSYQPLTANDTKDGRSKNRRTRI 267 Query: 337 LVED 340 ++ Sbjct: 268 ILLP 271 >gi|288801555|ref|ZP_06406997.1| OmpA family protein [Prevotella melaninogenica D18] gi|302345028|ref|YP_003813381.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] gi|288335597|gb|EFC74030.1| OmpA family protein [Prevotella melaninogenica D18] gi|302149794|gb|ADK96056.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] Length = 286 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + + ++ + Q + NN S Q + S + ++ + Sbjct: 31 TENNQLTADYQNAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINIS 90 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + + ++ ++ K + L +++ L+ ++ +K V + + + IS+ Sbjct: 91 KLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLA 150 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------R 282 D ++ S L KI +++ + I G+TD P R Sbjct: 151 DNM---LYKSGSYEVNDRAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTTTDKMKNIR 207 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 +NW LS RA S Q L GV+ R++ G + +D NRR I++ Sbjct: 208 NNWDLSCLRAASVAQYLQDRFGVNPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIIIT 266 Query: 340 DR 341 + Sbjct: 267 PK 268 >gi|330819528|ref|YP_004348390.1| type IV / VI secretion system protein, DotU family [Burkholderia gladioli BSR3] gi|327371523|gb|AEA62878.1| type IV / VI secretion system protein, DotU family [Burkholderia gladioli BSR3] Length = 469 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYS 294 +F + P I +L+++ L + + GHTD P R++ +DN+ LS RA + Sbjct: 360 LFPSGGADIAPAEIPLLRQVAAALNQVKGRVIVVGHTDDQPIRSLKFKDNFALSTARAQN 419 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP----MNSANRRIDIL 337 +L G+ + R + +G + IA+ P + NRR++IL Sbjct: 420 TLAIL-AQGLDDPRRLEANGAGSSQP-IATPPSLPENRARNRRVEIL 464 >gi|197124706|ref|YP_002136657.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|196174555|gb|ACG75528.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] Length = 206 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVIS 267 + K + T G+L+ + + +FD SS PE I L+++G+VLA + I Sbjct: 75 KELEKIAETKRTENGLLVEM---KGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIR 131 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 I G+TDA+ +++ N LSL RA + +VL+ GV E +I+ + G R + Sbjct: 132 IEGYTDATGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVRPVADNGTA 187 Query: 327 -MNSANRRIDILVE 339 + NRR+++ ++ Sbjct: 188 SGRAQNRRVELHID 201 >gi|300723438|ref|YP_003712743.1| hypothetical protein XNC1_2522 [Xenorhabdus nematophila ATCC 19061] gi|297629960|emb|CBJ90580.1| Conserved hypothetical protein with OmpA/MotB domains (probable component of SST VI cluster) [Xenorhabdus nematophila ATCC 19061] Length = 406 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 8/143 (5%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L L+ D I G+L T SII + +F S+ +++ I E L Sbjct: 259 KLQSLLKDEIEAGLLT-VTDMSDR-SIIVLKGDGLFKSSAIQIKSRYSAIIKHIAEALNS 316 Query: 262 STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + G+TD P + N+ LSL RA S + L + +R+S G Sbjct: 317 LQGNILVVGYTDNIPVSSRRSHFLSNYALSLARAKSVQRELQRYLNQPERVSA-EGKGAE 375 Query: 319 RLKIASDP--MNSANRRIDILVE 339 +D + NRR++I + Sbjct: 376 NPIAPNDTRSNRAKNRRVEITLL 398 >gi|317153382|ref|YP_004121430.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943633|gb|ADU62684.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 254 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 95/254 (37%), Gaps = 12/254 (4%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ++ S++K + + + G + + + S + Sbjct: 3 DKKSESKPQPELQAGVKPSQPKPDPGIPAWMATFADMVTLLLCFFVLLLSFTNTDITNFR 62 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 G + N F KE+ +++ + + ++ ++ + A + Sbjct: 63 LLMGSIQEALGVQYEDSGALSNPFADSSFKERQ-SVRENREIVEVGARLKDFIR---ARD 118 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 + + ++G+++ N+ MF + S+ P+ L+ + + + + I G Sbjct: 119 LTSMARVSSDKSGVMLRF---NNSAMFQRGSAELSPQAKPALEVVIAGMENKNFNLVING 175 Query: 271 HTDA-SPFRNIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDP 326 HTD+ +P ++ NW LS RA + +L S +S +R+ + G+A + + S+ Sbjct: 176 HTDSETPESDLYTSNWELSAARAATCLRYILTHSDISANRMKAV-GYAGAKPIVPSTSEE 234 Query: 327 MNSANRRIDILVED 340 NRR++ Sbjct: 235 NRQINRRVEFFYMP 248 >gi|260576491|ref|ZP_05844481.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259021374|gb|EEW24680.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 464 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 16/192 (8%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +++ + N L ++ E+ + + + + L+ ++ + R G+ Sbjct: 274 EALGSQLNSALAQVASEQRRRADLEAAEAERLRAEAQDLAKFRSEFFGELSKVLAGRQGV 333 Query: 225 LI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDA 274 I + +F+ S+ PE + + L +I + GHTD Sbjct: 334 RIVGDRFVFSSEVLFNPGSADLAPEGRAQIAGVVATLNEIAAQIPPGIDWIIRVDGHTDN 393 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNS 329 P DNW LS RA + + + + G S +R++ +GF ++ D + Sbjct: 394 VPLSGQGEFADNWELSQARALAVVRYMQDNLGFSPERLAA-TGFGEYQPVAVGDAPETRA 452 Query: 330 ANRRIDILVEDR 341 NRRI++ + +R Sbjct: 453 LNRRIELKLTER 464 >gi|256820420|ref|YP_003141699.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582003|gb|ACU93138.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 290 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 19/222 (8%) Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 N N+QQ + +LT ++KG + +LEKS+ L + + Sbjct: 61 SMKNQNDLLKENNQQLINNMGNLTTLTQKGAE-----NLEKSLESLREKDLTIKNLRDAV 115 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + L + +L G++ + + V + + + I+I D+ +F S Sbjct: 116 TRRDSINLA-----LVQSLKGVLGNLDDQDVDIKVEKGVVFINISDKM---LFSSGSYTI 167 Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKS 302 VL+K+ +V+ + + + GHTD + RDNW LS+ RA +VL K Sbjct: 168 SKNAKSVLEKVAKVVKNKPDFEFMVEGHTDNVNIKTSCIRDNWDLSVMRATEIVRVLQKD 227 Query: 303 -GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 GV+ +R++ +G +++ ++ N NRR I++ + Sbjct: 228 FGVAPERMTA-AGRSYYVPLASNGDANGRALNRRTRIVILPK 268 >gi|116695082|ref|YP_840658.1| OmpA/MotB-family outer membrane protein [Ralstonia eutropha H16] gi|113529581|emb|CAJ95928.1| outer membrane protein, OmpA/MotB-family [Ralstonia eutropha H16] Length = 435 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 29/295 (9%) Query: 48 FLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHIT 107 FL++ + + + IE Y++ +G+ D +D + Sbjct: 164 FLILGRLVESVAENIGTIEVYYHILSLGFQGRYRGMADGDQQLHAIRGRLLDAISKHN-- 221 Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLS-NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 V ++ S +Q R + + + + K + + + D+ + Sbjct: 222 -GPVPKELSSHSQPAPPGRFHHLSGIPVWMTCTAGLLAVAGLAGYYKYQLMLQERDVVQQ 280 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 I N PP K LA + L +I+ + + DN V+F Sbjct: 281 IGAIGNLTPPPAPKALRLA-------ELLKDEIARGVVAVRDDNHRSTVVFRGDD----- 328 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 MF + + L K+ + + + GH+D P ++ N Sbjct: 329 ---------MFGAGRAEVNAKLTPTLNKVAGEINKLQGKVQVIGHSDNQPIKSARYPSNQ 379 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 LS +RA + L GV++ R+ I G + +ANRR++++V Sbjct: 380 VLSEERAAMVSEYLASQGVAKRRLEAI-GKGDTEPLTDNKTPAARAANRRVEVVV 433 >gi|88800584|ref|ZP_01116145.1| chemotaxis MotB protein, putative [Reinekea sp. MED297] gi|88776639|gb|EAR07853.1| chemotaxis MotB protein, putative [Reinekea sp. MED297] Length = 355 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 13/266 (4%) Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 D+ + S Q++ + TKN ++ +T + + E N +Q Sbjct: 85 LDQLRSAQNSVQSQQSQLQAQLSTKNQEVEQLQATLTATEARLQEINTNLEVANQLIAEQ 144 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + +L + + + E + + + + + L ++ + L Sbjct: 145 QGALDEAATTEERFLAARQQLALEQAENETYSETVERLRQEMAAETAAMNALEAQLQTQL 204 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 S L + + ++ + I + + +F + E L + L+ Sbjct: 205 SQLNQEK--EKLVTQLEDGTTAIKL---PESILFASGRADINAEGRQSLANLATALSSFP 259 Query: 264 EV-ISIRGHTDASPFRNI----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 ISI+GHTD+ NW LS RA SA + L+K G+ D++ + G+A Sbjct: 260 NHLISIQGHTDSQTIAPATAEKYPTNWELSAARAASAVRELLKQGIPADQMQAV-GYADT 318 Query: 319 RLKI--ASDPMNSANRRIDILVEDRQ 342 R + S NRRI++++ Q Sbjct: 319 RPLVEETSAQTRQQNRRIEVILLPNQ 344 >gi|311109539|ref|YP_003982392.1| type VI secretion system OmpA/MotB family protein [Achromobacter xylosoxidans A8] gi|310764228|gb|ADP19677.1| type VI secretion system OmpA/MotB family protein [Achromobacter xylosoxidans A8] Length = 425 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A +++ L+ + D +V V E R S++ R +F+ +S + + VL ++ Sbjct: 274 APRLAVFLAPEIRDQLVS-VRDEVDR-----SVVVLRGDGVFESGASSVRDQYLPVLSRV 327 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + L + I +RG++D +P R+ NW LS RA + +L + R+ + G Sbjct: 328 ADALRETQGSILVRGYSDNTPMRSARFPSNWHLSQARADAVKDMLEQRLGQTARV-RAEG 386 Query: 315 FAHHRLKIASDP--MNSANRRIDILVE 339 +D + NRR++I V Sbjct: 387 RGDADPVAPNDTAAGRALNRRVEITVL 413 >gi|292489492|ref|YP_003532380.1| putative type VI secretion system core protein [Erwinia amylovora CFBP1430] gi|292898296|ref|YP_003537665.1| outer membrane protein [Erwinia amylovora ATCC 49946] gi|291198144|emb|CBJ45249.1| putative outer membrane protein [Erwinia amylovora ATCC 49946] gi|291554927|emb|CBA22885.1| putative type VI secretion system, core protein [Erwinia amylovora CFBP1430] gi|312173666|emb|CBX81920.1| putative type VI secretion system, core protein [Erwinia amylovora ATCC BAA-2158] Length = 413 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 ++ L S++ + +F +S+ VL ++ + + I + G+ Sbjct: 268 IEQGLVAVRDEADR-SVVTLKGDGLFTSASTEVRGRYAEVLDRVAAAMNSVSGRILVVGY 326 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +D P R+ N+ LSL RA S + L + R+ G ++ Sbjct: 327 SDNVPIRSARFASNYELSLARAQSVSEQLQQHLTQPQRVKA-EGRGESNPLAPNNSAGNR 385 Query: 329 SANRRIDILVE 339 + NRR++I + Sbjct: 386 ARNRRVEITLL 396 >gi|325860437|ref|ZP_08173549.1| OmpA family protein [Prevotella denticola CRIS 18C-A] gi|325482095|gb|EGC85116.1| OmpA family protein [Prevotella denticola CRIS 18C-A] Length = 286 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + + ++ + Q + NN S Q + S + ++ + Sbjct: 31 TENNQLTADYQSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINIS 90 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + + ++ ++ K + L +++ L+ ++ +K V + + + IS+ Sbjct: 91 KLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLA 150 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------R 282 D ++ S L KI +++ + I G+TD P R Sbjct: 151 DNM---LYKSGSYEVNERAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTANDKMKNIR 207 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 +NW LS RA S Q L GV+ R++ G + +D NRR I++ Sbjct: 208 NNWDLSCLRAASVVQYLQDRFGVNPKRLTA-GGRGEYNPIATNDTELGKQRNRRTQIIIT 266 Query: 340 DR 341 + Sbjct: 267 PK 268 >gi|86130772|ref|ZP_01049371.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85818183|gb|EAQ39343.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 293 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 18/233 (7%) Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 ++ E Y + Q+ + N + + DL S D + I K+ Sbjct: 49 EKEEIKAKYAAIEQRVDDYNNKINALKDTNTDLQASNDSKFEITTNGTVMSENTKKKLRA 108 Query: 185 AMK-----RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RN 233 A+ + Q L ++ +S + N+ + V I I I D + Sbjct: 109 ALANVDPSELAQAQTLEDSMNLAVSHKLKRNLDRDVYGNNASQDINIDIDDTVVQISISD 168 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR--DNWRLSLD 290 +F S E +L++I V+ + + GHTD+ + + DNW LS+ Sbjct: 169 KMLFRSGSYRVSKEADDLLKRIAAVVNSEPAVEVMVEGHTDSRTVKKGSYLKDNWDLSVQ 228 Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + + L + V ++ SG + + + ++ S NRR IL+ Sbjct: 229 RATAIVRELQNNHNVDPAKLIA-SGRSSYVPLVENNSKENMSRNRRTRILILP 280 >gi|224373185|ref|YP_002607557.1| OmpA/MotB [Nautilia profundicola AmH] gi|223588582|gb|ACM92318.1| OmpA/MotB [Nautilia profundicola AmH] Length = 258 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 15/219 (6%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 ++ L S + + + + + +K +++ Sbjct: 21 GDLMSLLLCFFVLLLSMSTMDAKKVKEAIGSLAGALSVLEGGTQTEVSRNRIQKATPIEK 80 Query: 189 KKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K+S ++ A ++ E G I + F S+ Sbjct: 81 TDETAQTVNKLSQAVAEFRQFTAGGKGPAIVLEEGEEGFFIRLPADIT---FKPGSAQIT 137 Query: 246 PETIVV-LQKIGEVLAH-STEVISIR--GHTDASPF--RNIARDNWRLSLDRAYSAYQVL 299 E ++ L++I ++ + I I+ G+TD P + DNW LS RA S ++L Sbjct: 138 DEDSLLFLKRIALIIKEYLPKNIEIQIKGYTDNQPPPPTSPYADNWELSAARALSVLKIL 197 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +K GV+ ++S + + + A+ + NRR++I Sbjct: 198 IKDGVNPKQLSAAA-YGEYHPIAANATPEGRAKNRRVEI 235 >gi|149372159|ref|ZP_01891429.1| putative flagellar motor protein MotB [unidentified eubacterium SCB49] gi|149354926|gb|EDM43488.1| putative flagellar motor protein MotB [unidentified eubacterium SCB49] Length = 287 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 90/256 (35%), Gaps = 21/256 (8%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + + DL + NS + + K + N SN Q E K+ Sbjct: 28 QTKQKETEDLLNTATVKLNSCLTEKSAAIVKAEGLEDRLNDLKASNQQLIESSKDLTILT 87 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 S+ +L KS + K + + LSK+ + + + L K++ Sbjct: 88 SKGADNLEKSLESLKERDLKITRLQDALSKKDSVTLAL---VSSLKKEV---------GM 135 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269 + + + + IS+ D +F S +L K+ V+ + + Sbjct: 136 NDQDIQINVEKGVVFISLSD---KVLFKSGSYNLSTRANEILGKVATVINGKPDFEALVE 192 Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GHTD P+ DN LS RA + + L+ G + ++ +G + + + Sbjct: 193 GHTDNVPYNGGGVLIDNLDLSAKRATAVVRQLISLGANPSQLIA-AGRGEFVPLVPNTSV 251 Query: 328 NSA--NRRIDILVEDR 341 + NRR I + + Sbjct: 252 ENKTLNRRTKIYILPK 267 >gi|187922936|ref|YP_001894578.1| hypothetical protein Bphyt_0935 [Burkholderia phytofirmans PsJN] gi|187714130|gb|ACD15354.1| type IV / VI secretion system protein, DotU family [Burkholderia phytofirmans PsJN] Length = 414 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 4/140 (2%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L L+ + I G + + S + R MF ++ KI + Sbjct: 277 LKELLKNEIAAGTV--SVDEDARHSSVTFRGDAMFPPGGVNVNASMGPLIAKIASEIGKV 334 Query: 263 TEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF-AHHRL 320 +++ GHTD P R+ N LS +RA Q+L SGV+ R+ I G A+ Sbjct: 335 PGKVTVTGHTDNLPIRSRQFASNDALSEERATQVMQMLQASGVAAARLEAIGGGEANPIG 394 Query: 321 KIASDPMNSANRRIDILVED 340 A+ + NRR++I V Sbjct: 395 DNATAQGRAQNRRVEITVTP 414 >gi|254457990|ref|ZP_05071417.1| OmpA/MotB [Campylobacterales bacterium GD 1] gi|207085383|gb|EDZ62668.1| OmpA/MotB [Campylobacterales bacterium GD 1] Length = 219 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 18/206 (8%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 ++ ++ S L T E S + + + E A+ R + A Sbjct: 1 MDAKKISEAIGSLSGAMSVLEGGTKTEVSKQRMQQSTPIDSNDESSEAVNRVAQAVIDAN 60 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIG 256 ++ G + E + G +I + + +F S+ + ++ L+++ Sbjct: 61 EMMEKGHGPA-------ISVEEAQEGFVIEL---PASLLFKSGSATIENEDALLFLKRVA 110 Query: 257 EVLAHSTE--VISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++ +S++GHTD N + +DNW LS RA S Q L+ V RIS Sbjct: 111 LIVEELPNSMQVSVQGHTDNQGPGNNSVFKDNWELSSARAISVLQELLLDSVDPKRISA- 169 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDI 336 SGFA ++ + + NRR+++ Sbjct: 170 SGFAEYKPLATNVTEAGREKNRRVEL 195 >gi|327312584|ref|YP_004328021.1| OmpA family protein [Prevotella denticola F0289] gi|326944583|gb|AEA20468.1| OmpA family protein [Prevotella denticola F0289] Length = 288 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + + ++ + Q + NN S Q + S + ++ + Sbjct: 33 TENNQLTADYQSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINIS 92 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + + ++ ++ K + L +++ L+ ++ +K V + + + IS+ Sbjct: 93 KLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLA 152 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------R 282 D ++ S L KI +++ + I G+TD P R Sbjct: 153 DNM---LYKSGSYEVNERAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTANDKMKNIR 209 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 +NW LS RA S Q L GV+ R++ G + +D NRR I++ Sbjct: 210 NNWDLSCLRAASVVQYLQDRFGVNPKRLTA-GGRGEYNPIATNDTELGKQRNRRTQIIIT 268 Query: 340 DR 341 + Sbjct: 269 PK 270 >gi|83949920|ref|ZP_00958653.1| flagellar motor protein [Roseovarius nubinhibens ISM] gi|83837819|gb|EAP77115.1| flagellar motor protein [Roseovarius nubinhibens ISM] Length = 627 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 16/242 (6%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + + R E + + S+ +++ K Sbjct: 382 QAREALSEQEAMTEAARREQALLNQQVQALRTQLGELQALLDDAVDRESSSSVQLQTLGK 441 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS-- 227 + N L L+ E+ + ++ L + L ++ + + G+ I Sbjct: 442 DLNVALARLAAEEKRRRELQEEKAKLLEAQKQDLEKYRSEFFGRLRDVLGAQDGVRIEGD 501 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRN 279 + +F + E + K+ E+L VI + GHTD P N Sbjct: 502 RFVFSSEVLFAPGRAALSTEGRGEVAKVAEILRKVAGDIPPELDWVIRVDGHTDDVPIVN 561 Query: 280 IAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 A DNW LS RA S + +++S G+ DR+S +GF ++ D + NRRI Sbjct: 562 SAEFADNWELSQARALSVVRYMIESLGIPPDRLSA-NGFGQYQPVAQGDSAEARAQNRRI 620 Query: 335 DI 336 ++ Sbjct: 621 EL 622 >gi|313112366|ref|ZP_07798128.1| hypothetical protein PA39016_004320000 [Pseudomonas aeruginosa 39016] gi|310884630|gb|EFQ43224.1| hypothetical protein PA39016_004320000 [Pseudomonas aeruginosa 39016] Length = 372 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ +AD+I + + S++ R +F +S+ E +L +I + L Sbjct: 230 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 287 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW+LS RA +L + R + G + Sbjct: 288 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 346 Query: 321 K--IASDPMNSANRRIDILV 338 AS + NRR++I V Sbjct: 347 VATNASAEGRARNRRVEITV 366 >gi|149193957|ref|ZP_01871055.1| OmpA/MotB [Caminibacter mediatlanticus TB-2] gi|149135910|gb|EDM24388.1| OmpA/MotB [Caminibacter mediatlanticus TB-2] Length = 256 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 13/191 (6%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + LE E + + + + + + L + I+ + Sbjct: 51 GSLQGALSVLEGGTQTEVSRERIQKATPIVKNEETAQTVNRLQQAITE-FKEMTQAGKGN 109 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAH-STE--VISIR 269 + + G I + F S+ ++++ L++I ++ + I IR Sbjct: 110 AITLQEGEEGFFIRLPADIT---FAPGSAEITNQDSLLFLKRIAIIIKEYLPKNIDIQIR 166 Query: 270 GHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325 G+TD P + RDNW LS RA S ++L+K GV ++S + + + ++ Sbjct: 167 GYTDNLPPPKNSPYRDNWDLSAARALSVLKILIKDGVDPKQLSAAA-YGEYHPIASNLTP 225 Query: 326 PMNSANRRIDI 336 NRR++I Sbjct: 226 EGRDKNRRVEI 236 >gi|78485864|ref|YP_391789.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78364150|gb|ABB42115.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2] Length = 248 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 84/210 (40%), Gaps = 16/210 (7%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++ E SLT G + + ++ N P+ + R ++L+ L Sbjct: 36 DAKKYEGIVESLTNTLGHGAGMSQVQLEYFKKTEQIN----PIPMQSSKIEARPEKLKPL 91 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + I+ T ++ ++ V + R + +S F + P V L+K+ Sbjct: 92 YESIAKTYEKSQQESNIE-VTIDEERQQVKVSF---PERISFPTGEADLKPGFSVQLRKL 147 Query: 256 GEVLAHSTEVISIR--GHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++ I ++ GHTD P + R NW LS RA + Q L+ + +++ Sbjct: 148 KNLI---DNTILVKAIGHTDKRPISSDRFRSNWELSSARAAAVIQQLIDDKIITPDQAEV 204 Query: 313 SGFAHHRLKI--ASDPMNSANRRIDILVED 340 G A +D + NRR+++++ Sbjct: 205 IGVADTHPVDEQENDAAYALNRRVEVVLIP 234 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 64/189 (33%), Gaps = 7/189 (3%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 +W +AD M++LMA F++++ ++ D + I + + S+ + Sbjct: 9 PTWLATFADLMSLLMAVFVLLFAMSTLDAKKYEGIVESLTNTLGHGAGMSQVQLEYFKKT 68 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 E+ + + S E + L ++ Q+ N + +Q Sbjct: 69 EQINPIPMQSSKIEARPEKLKPLYESIAKTYEKSQQESNIEVTIDEERQQVKVSFPERIS 128 Query: 151 SEKGKDLCKSTDLEKS-------INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 G+ K + N + K I + + + + + + ++ + Sbjct: 129 FPTGEADLKPGFSVQLRKLKNLIDNTILVKAIGHTDKRPISSDRFRSNWELSSARAAAVI 188 Query: 204 SGLVADNIV 212 L+ D I+ Sbjct: 189 QQLIDDKII 197 >gi|325269589|ref|ZP_08136204.1| OmpA family protein [Prevotella multiformis DSM 16608] gi|324988067|gb|EGC20035.1| OmpA family protein [Prevotella multiformis DSM 16608] Length = 289 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 86/240 (35%), Gaps = 14/240 (5%) Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 + ++ + Q + NN S Q + S + ++ + + Sbjct: 36 NNQLSADYQSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINISKL 95 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + ++ ++ K + L +++ L+ ++ +K V + + + IS+ D Sbjct: 96 VDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLADN 155 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------RDN 284 ++ S L KI +++ + I G+TD P R+N Sbjct: 156 M---LYKSGSYEVNDRAEQTLSKIAKIITDYKDYDVLIEGNTDNVPINTANDKMKNIRNN 212 Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 W LS RA S Q L GV+ R++ G + +D NRR I++ + Sbjct: 213 WDLSCLRAASVVQYLQDRFGVNPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIIITPK 271 >gi|220919426|ref|YP_002494730.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957280|gb|ACL67664.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 206 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVIS 267 + K + T G+L+ + + +FD SS PE I L+++G+VLA + I Sbjct: 75 KELEKIAETKRTENGLLVEM---KGDILFDSGSSALKPEAISKLEQMGDVLAKYGDDRIR 131 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325 I G+TDA+ +++ N LSL RA + +VL+ GV E +I+ + G R + Sbjct: 132 IEGYTDATGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVRPVADNGTS 187 Query: 326 PMNSANRRIDILVE 339 + NRR+++ ++ Sbjct: 188 AGRAQNRRVELHID 201 >gi|119384145|ref|YP_915201.1| hypothetical protein Pden_1404 [Paracoccus denitrificans PD1222] gi|119373912|gb|ABL69505.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222] Length = 463 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 88/244 (36%), Gaps = 16/244 (6%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 ++ R +Q + + G++ ++ + + ++ N Sbjct: 221 QQLSEQEALSVEDRRRLAALNQQVAQLNSQLGSLRAVLDAAGEERREADLRAEDLGRQLN 280 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIID 230 L ++E+ ++ + A+ + L+ ++ + R G+ + Sbjct: 281 VALLRAAEEERKRRALEEEARSKAEAEAKDLARYRSEFFGRLSQILAGREGVRVVGDRFV 340 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRN--I 280 + +F + PE + ++ ++L + I + GHTD P Sbjct: 341 FSSEVLFAPGEATLSPEGRTQVARVADMLKQISGDIPPEIDWMIRVDGHTDNLPLSGQGR 400 Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 RDNW LS RA + + ++ G R+ +GFA R D + NRRI++ Sbjct: 401 YRDNWELSQARALAVVRYMVDDLGFPATRL-APAGFADTRPVAQGDAPEARAQNRRIELK 459 Query: 338 VEDR 341 + +R Sbjct: 460 LTER 463 >gi|183219622|ref|YP_001837618.1| flagellar motor protein MotB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909761|ref|YP_001961316.1| flagellar motor protein MotB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774437|gb|ABZ92738.1| Endoflagellar motor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778044|gb|ABZ96342.1| Chemotaxis MotB protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 277 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 32/180 (17%) Query: 192 LQDLAKKISSTLSGLVADNIVKG----------------VLFETTRTGILISIIDQRNTP 235 L+++ +I S S +V N+ K V G++IS++ Sbjct: 72 LEEMGMQIESLPSQVVGRNLSKSKKDAQEVFKPEVEAGKVRISENERGLVISLV---GAD 128 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA---SPFRNIAR------DNWR 286 F S+I P L+K ++ + + GH+D +P R +NW Sbjct: 129 YFYPGSAILTPAIRETLRKAAGLIKGLERFVRVEGHSDDDAVNPVSRPGREEREYINNWD 188 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA----NRRIDILVEDRQ 342 L+ RA +A ++ + E + F +R + + NRR+DI++ + Sbjct: 189 LAGARAVNATVFMINAEEIEPSWFQAVSFGSYRPLVLENEGTPEAKAFNRRVDIIILTEK 248 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMT 78 KK + + + Y D +T+L+ FF++++ TD + I F Sbjct: 4 KKEKCPECIQKVPEFMATYGDMVTLLLCFFILLYTTGKTDAKEMQIILSAFK-------- 55 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 ++ G F + S ++ + I+ ++ S ++ + E + S+ Sbjct: 56 STTGFFTGGQTLSKGSLEEMGMQIESLPSQVVGRNLSKSKKDAQEVFKPEVEAGKVRISE 115 Query: 139 QSEHCKNSL 147 SL Sbjct: 116 NERGLVISL 124 >gi|238023638|ref|YP_002907870.1| hypothetical protein bglu_2g01470 [Burkholderia glumae BGR1] gi|237878303|gb|ACR30635.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 438 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LS L+ D I +G L T S + R MF S PE VL K+ +A Sbjct: 300 RLSVLLKDEIARGEL--TVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVAR 357 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + G+TD+ P DN LS RA VL G +RI I G + Sbjct: 358 VGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSI-GKGDAQP 416 Query: 321 KIASDP--MNSANRRIDILV 338 + S NRR+++LV Sbjct: 417 VADNATPQGRSRNRRVEVLV 436 >gi|159185884|ref|NP_356875.2| hypothetical protein Atu3746 [Agrobacterium tumefaciens str. C58] gi|159141018|gb|AAK89660.2| flagellar motor protein [Agrobacterium tumefaciens str. C58] Length = 261 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 82/248 (33%), Gaps = 19/248 (7%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 ++ +D G+ S + + + +E ++ Sbjct: 19 QSLLDAGSGNNASANARIGSLTGELDEQRQANSRASAQIELLNQQIAALRAQIASVEAAL 78 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI- 226 E K L + L ++++ +D + + R I I Sbjct: 79 QASEAKDTSSQVKIADLGRRLNVALAQRVQELNR----YRSDFFGRLREILSDRENIRIV 134 Query: 227 -SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPF 277 ++ +F + PE + K+ L A V+ + GHTD Sbjct: 135 GDRFVFQSEVLFPSGGNDLNPEGQAEMAKLATALLDLAKEIPAEINWVLRVDGHTDNVQL 194 Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 RDNW LS RA S + L+ GV +R+ +GF ++ D + NRR Sbjct: 195 TGSGRYRDNWELSSARATSVVKFLISKGVPANRLVA-AGFGEYQPIAEGDSPEARQQNRR 253 Query: 334 IDILVEDR 341 I++ + +R Sbjct: 254 IELKLTER 261 >gi|86133789|ref|ZP_01052371.1| OmpA family protein [Polaribacter sp. MED152] gi|85820652|gb|EAQ41799.1| OmpA family protein [Polaribacter sp. MED152] Length = 279 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 14/243 (5%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 +N G+ + + Q + + + + ++ + E ++D Sbjct: 28 ENKYTDAKGNLQKLQLKQEEIDRRVEMYYDKINSLKDDNANLEEENALKFDVNSDNIVIS 87 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQD-----LAKKISSTLSGLVADNIVKGVLFETTRT 222 +K L+K + K L+D L+ I + G + + T Sbjct: 88 DKGRAIMDATLAKVDPKKLAEAKTLKDSLNLALSYNIITQTLGEAELLNSDELDIDIDET 147 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 ++IS+ D +F+ S + ++ KI ++ I I GHTD+ N Sbjct: 148 VVMISVSD---KLLFNTGSYRVKESALSLITKIADIAESEPSIDIMIEGHTDSQSISNAT 204 Query: 282 -RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +DNW LS+ RA S ++L K + R+ SG + + + NRR I+ Sbjct: 205 VQDNWDLSVKRATSIVRLLQNKFKIDGSRLIA-SGRGDTVPLLPNTSSENRAKNRRTRIV 263 Query: 338 VED 340 + Sbjct: 264 ILP 266 >gi|255534563|ref|YP_003094934.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium 3519-10] gi|255340759|gb|ACU06872.1| putative flagellar motor protein MotB [Flavobacteriaceae bacterium 3519-10] Length = 300 Score = 96.5 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 21/221 (9%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 ENN+ N L+ + ++ K S NK + +K L + Sbjct: 80 SENNLLKSQNDALKSSLDACLSNTGKGSANIDKLIGEINSSNKYIQQLISTNAKNDSLNL 139 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 L+ K+ +L + D+ V + + ++IS+ D+ ++ +P Sbjct: 140 A-------LSNKLKRSLDNIADDD----VQVKVLKGVVMISLSDKM---LYKTGDYNVMP 185 Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLM-KS 302 VL K+ +V+ + I G+TD P + +DNW LS RA S ++L K Sbjct: 186 AAQEVLGKVAQVINDYDTYSVLIEGNTDNVPLSSANLPKDNWDLSALRATSMAKILQTKF 245 Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 GV+ RI+ G + + K + + NRR +I++ + Sbjct: 246 GVNPARITA-GGRSEYNPKTTNASVSGRAENRRTEIIIMPK 285 >gi|254515071|ref|ZP_05127132.1| flagellar motor protein [gamma proteobacterium NOR5-3] gi|219677314|gb|EED33679.1| flagellar motor protein [gamma proteobacterium NOR5-3] Length = 216 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 14/124 (11%) Query: 225 LISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASP 276 I+I D R + +F +S E +L + L + +++ I G TD P Sbjct: 77 RITINDGRIGISGSVLFALNSDRLQEEGRELLVTLAAPLEVFLQENDQLLMISGFTDDLP 136 Query: 277 FRNI---ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331 ++ DNW LS RA + + L+ +G+ DR+ + F + + + + N Sbjct: 137 IQSGNLNFADNWELSAQRALTVTRELVAAGLPADRVFAAA-FGDQQPVAPNLDESGRALN 195 Query: 332 RRID 335 RR++ Sbjct: 196 RRVE 199 >gi|123442902|ref|YP_001006877.1| putative OmpA family protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089863|emb|CAL12719.1| putative OmpA family protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 458 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ L+ D I K ++ + T + + + MF S E + V++++ + + Sbjct: 320 RLAILLKDEIAKQLVSVDETSSRSKVIF---KGDTMFQVGSDKVRSEIMSVIERVAQEVH 376 Query: 261 HSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I GHTD+ P + +N LS RA + + + K+G+ D+I + G + Sbjct: 377 RVQGAVLIIGHTDSMPINKPGFPNNQVLSEKRAANVARFMEKAGIPTDKI-QFEGKGDTQ 435 Query: 320 LKIASD--PMNSANRRIDILV 338 ++D S NRR++I V Sbjct: 436 PVSSNDDAAGRSQNRRVEIFV 456 >gi|220905442|ref|YP_002480754.1| OmpA/MotB domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869741|gb|ACL50076.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 235 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 8/143 (5%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +A+KI L G+ + + + + MF + LPE VL Sbjct: 84 IAQKIKQLLMADSVPQSASGISADDVGVQLRV-----NSDIMFKPGTVELLPEGDKVLSS 138 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + ++ + +RGH D+ W LS RA + L + G+ R+ +S Sbjct: 139 VLSLMEEYNLYLVVRGHADSVEAAPPYASAWELSGARAAAMVNYLAQRGIKATRMRAVS- 197 Query: 315 FAHHRLKIA--SDPMNSANRRID 335 + R + + NRR++ Sbjct: 198 YGDTRPLKPGIDEQSRAMNRRVE 220 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 81/214 (37%), Gaps = 7/214 (3%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 G+WK+ YADF+T +MAFFL++W+++ +T+ + YF+ +++ + + Sbjct: 2 GGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPFI 61 Query: 90 PERSSQNKIDLSIDE-HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 + D+ I E + ++ KI + + I Q + + Sbjct: 62 QNTDKIDTRDIKISEVEKSHYAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIMF 121 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSK---EKILAMKRKKRLQDLAKKISSTLSG 205 + L ++ E Y L + + + + A +L+ ++ + Sbjct: 122 KPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVEAAPPYASAWELSGARAAAMVN 181 Query: 206 LVADNIVKGVLFETTRTGILISI---IDQRNTPM 236 +A +K G + ID+++ M Sbjct: 182 YLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAM 215 >gi|312963881|ref|ZP_07778352.1| hypothetical protein PFWH6_5800 [Pseudomonas fluorescens WH6] gi|311281916|gb|EFQ60526.1| hypothetical protein PFWH6_5800 [Pseudomonas fluorescens WH6] Length = 429 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+G +A+ I G + + S++ R +F +S+ + + ++ +I + + Sbjct: 287 RLAGFLAEEIKAGRV--AVEDKVDRSVVTIRGDELFASASASIVDDYQPLMLRIADAIRK 344 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW LS RA S ++L DR S G + Sbjct: 345 VKGQVRVTGHSDNRPIATLRFPSNWALSEARAKSVLEILAAKTGQADRFSA-EGRSDTEP 403 Query: 321 KIASDP--MNSANRRIDILVE 339 + + NRR++I V Sbjct: 404 LATNSTAEGRARNRRVEITVL 424 >gi|253991260|ref|YP_003042616.1| outer membrane protein, ompa/motb family [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638308|emb|CAR66931.1| outer membrane protein, ompa/motb family [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782710|emb|CAQ85875.1| outer membrane protein, ompa/motb family [Photorhabdus asymbiotica] Length = 387 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 V +++ ++ +S+ + +F +S+ P LQ++ + L +T + Sbjct: 246 VLQPMIEQQDITVSQNADNVSVT-LQGGGLFASASATLNPLYQTPLQELAKQLNLTTGKV 304 Query: 267 SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 +RGH+D P N+ LSL RA + Q L + + R+ ++ + + Sbjct: 305 IVRGHSDNLPIHTHTYSSNYALSLARAETVAQQLRTNLLQPQRL-QVESAGAEAPLVPNT 363 Query: 326 P--MNSANRRIDIL 337 + NRRI+I+ Sbjct: 364 TAKNRALNRRIEII 377 >gi|330828822|ref|YP_004391774.1| OmpA family protein [Aeromonas veronii B565] gi|328803958|gb|AEB49157.1| OmpA family protein [Aeromonas veronii B565] Length = 306 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 13/211 (6%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL---AMKRKK 190 SQ ++ E + + S + E+ P S I ++ Sbjct: 52 DGMSQAFSVMQSGGNGLLEGQGNSLLDNAVSASPSLLESPASPSPSLAPISGVPVLQDGA 111 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L L ++ ++ LV IVK + + + + +F S+ P Sbjct: 112 TLAKLDMQLQQSMGSLVDAGIVK---LTQDENWLTVELS---SGLLFGSGSAFLGPNAAP 165 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 V+ + +L + +RG+TD N I R NW LS RA + L+ G++ R+ Sbjct: 166 VINTLSSILKPVDNYVRVRGYTDNQQINNEIYRSNWALSAARAEAVLNGLIADGIAPQRL 225 Query: 310 SKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + + + NR++ + + Sbjct: 226 -AFEAYGEFSPFADNGSEQGRLQNRKVVVAI 255 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 1/138 (0%) Query: 17 IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 ++K+ + +L W + YAD+MT++ A F+V++ + + D +A+ + Sbjct: 1 MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMSQAFSV 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + + G+ + Q + S+ E S L S Q + Sbjct: 61 MQSGGNGLLEGQGNSLLDNAVSASPSLLESPASPSPSLAPISGVPVLQDGATLAKLDMQL 120 Query: 136 NSQQSEHCKNSLTRDSEK 153 + + ++ Sbjct: 121 QQSMGSLVDAGIVKLTQD 138 >gi|218888823|ref|YP_002437687.1| hypothetical protein PLES_00791 [Pseudomonas aeruginosa LESB58] gi|218769046|emb|CAW24806.1| hypothetical protein PLES_00791 [Pseudomonas aeruginosa LESB58] Length = 449 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ +AD+I + + S++ R +F +S+ E +L +I + L Sbjct: 307 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 364 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW+LS RA +L + R + G + Sbjct: 365 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 423 Query: 321 K--IASDPMNSANRRIDILV 338 A+ + NRR++I V Sbjct: 424 VASNANAEGRARNRRVEITV 443 >gi|254255076|ref|ZP_04948393.1| Flagellar motor protein [Burkholderia dolosa AUO158] gi|124899721|gb|EAY71564.1| Flagellar motor protein [Burkholderia dolosa AUO158] Length = 352 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 7/158 (4%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 S + G + T S+++ S + L LA + + Sbjct: 125 SEQAMYDGGAGMFDGTGSAPSLDEPIGPRAIDPSTG-AVTWDADDGLAQLAARFDRLGAD 183 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV 265 + ++ V+ T G+ + + D + +F++ S++P P +L K+G + A + Sbjct: 184 AGLQDNLRSVM---TPFGLRLMLHDSESQGVFERGSAVPAPPFRPLLDKMGALFAQTDSP 240 Query: 266 ISIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLM 300 + + GHTD+ P+R R NW LS DRA SA + L+ Sbjct: 241 LLVIGHTDSVPYRKYGLGGRSNWHLSADRAMSARRALV 278 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 16 IIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 I+K+ ++ G+WK+ +ADF LM FL++W++ A D++ + + + Sbjct: 71 IVKRAPRRAHDHDHGGNWKVAFADFCLALMCLFLLLWVLAARDEEETRI--KLIEMSEQA 128 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + G+FD + +ID + D G ++ RL + Sbjct: 129 MYDGGAGMFDGTGSAPSLDEPIGPRAIDPSTGAVTWDADDGLAQLAARFDRLGADAGLQD 188 Query: 136 N 136 N Sbjct: 189 N 189 >gi|254428132|ref|ZP_05041839.1| OmpA family protein [Alcanivorax sp. DG881] gi|196194301|gb|EDX89260.1| OmpA family protein [Alcanivorax sp. DG881] Length = 212 Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 18/175 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L + L ++ KRL + +++ L +AD + G T I I + + Sbjct: 40 QLELSQSLEQEKAKRLAEEQRRM--ALEEALADPLASG---RVTFHNGRIGIS---GSVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFR---NIARDNWRLSL 289 F +S PE +L + + L + +++ + G TD P DNW LS Sbjct: 92 FQLNSDQLQPEGEALLSDLVKPLQVFLSQHDDMLMVSGFTDDLPINRGNGRYADNWGLSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 RA + + L++ G+ D++ + F ++ +D + NRR+++ RQ Sbjct: 152 QRALTVTRTLIEQGMPADQVFAAA-FGDNQPVAPNDDADSRARNRRVELTTVPRQ 205 >gi|84501383|ref|ZP_00999588.1| hypothetical protein OB2597_13498 [Oceanicola batsensis HTCC2597] gi|84390674|gb|EAQ03162.1| hypothetical protein OB2597_13498 [Oceanicola batsensis HTCC2597] Length = 467 Score = 96.1 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 10/150 (6%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + K++ L + +V+ +T I I I + MF S PE L+ Sbjct: 321 EQVTKVAGFLEAEIDQGLVEVFQDNST---ITIRI---AGSNMFGSGSDRLQPEFDQPLE 374 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++ + L + + + GH+D P R+ N LSL RA S Q L R+ Sbjct: 375 RVAQALTETEGPVIVVGHSDNVPIRSSRFPSNMHLSLARAESVMQKLAGLIEDPTRLQS- 433 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVED 340 G A +D + NRRI+I++ Sbjct: 434 EGRAAKEPIDTNDTREGRARNRRIEIVLVR 463 >gi|299145942|ref|ZP_07039010.1| OmpA family protein [Bacteroides sp. 3_1_23] gi|298516433|gb|EFI40314.1| OmpA family protein [Bacteroides sp. 3_1_23] Length = 297 Score = 96.1 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN-SQQSE 141 + +Q ++ K+ E + + ++ +++ + NN + S Sbjct: 21 VSQKQFKGLKTDYTKLQTEYQESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQS 80 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 SLT+ S+ ++ K D + N+ + + K K R L + + Sbjct: 81 ILNKSLTQSSQGNMNMGKLIDEINASNRFIQHLV-----------KEKNRSDSLNLVMVN 129 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ + ++ + + + + IS+ D ++ S + VL KI +++ Sbjct: 130 KLTRSLTREEMRDLDIKVLKGVVYISLADNM---LYKSGSYEISNKAEAVLSKIAKIIQD 186 Query: 262 S-TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318 + + G+TD P R R+NW LS RA S Q L G++ R++ +G Sbjct: 187 YKDYDVLVEGNTDTDPISRTNIRNNWDLSALRASSVVQALQNVYGINPKRLTA-AGRGEF 245 Query: 319 RLKIASDPMN--SANRRIDILVEDR 341 +D + NRR +I++ + Sbjct: 246 NPVAGNDTAEGKARNRRTEIIITPK 270 >gi|186471751|ref|YP_001863069.1| DotU family type IV/VI secretion system protein [Burkholderia phymatum STM815] gi|184198060|gb|ACC76023.1| type IV / VI secretion system protein, DotU family [Burkholderia phymatum STM815] Length = 429 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 10/162 (6%) Query: 185 AMKRKKRLQDLAKKISS------TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 A +K++ D+A+ L L+ D I G + + S + R MF Sbjct: 268 ADDIQKQIGDIARMTPPPAPPVLHLKTLLKDEIAAGTV--SVDEDAKHSAVTFRGDSMFP 325 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQ 297 ++ KI + +++ G+TD P + N LS +RA Q Sbjct: 326 PGGVAVNTSMGPLIAKIAAEIVKVPGKVTVLGYTDNLPIHSHAFASNDALSAERATQVLQ 385 Query: 298 VLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 +L GV R+ + G A ++ + NRR++I V Sbjct: 386 MLQADGVPASRLEAMGKGEADPVADNSTPQGRAQNRRVEIHV 427 >gi|325953930|ref|YP_004237590.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323436548|gb|ADX67012.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 284 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ ++ + + + + IS+ D ++ S P L KI ++ Sbjct: 126 LTNNLTRSLSREEMRDIDVQVLKGVVYISLADNM---LYKSGSYEISPAAGETLSKIAKI 182 Query: 259 LAH-STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315 + + I G+TD P R+NW LS RA S Q L + GV R++ G Sbjct: 183 IKDYRDYDVLIEGNTDNVPINRPNIRNNWDLSALRASSVVQALQNQYGVDPKRLTA-GGR 241 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDR 341 + A++ S NRR I++ + Sbjct: 242 GEYNPVTTNATEEGKSKNRRTQIIITPK 269 >gi|220913721|ref|YP_002489030.1| OmpA/MotB domain protein [Arthrobacter chlorophenolicus A6] gi|219860599|gb|ACL40941.1| OmpA/MotB domain protein [Arthrobacter chlorophenolicus A6] Length = 266 Score = 95.7 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 9/210 (4%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + + + +NSL T + ++ LA+K +L L Sbjct: 45 DQAKFDKLRNSLATGFGAVASQTADTASGTVVPPDQVNKDAEAFSSLDLAIKEVDKLTAL 104 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +++ + L A + V F+ + G+ + ++ + F VL I Sbjct: 105 QQQMETALK---AQQLDSNVEFQISERGLTVKLVGSQ--AFFLPDRPELTRRASQVLDTI 159 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKIS- 313 LA + I + GH A+ W LS R+ + + L+ + GV+ RI ++ Sbjct: 160 SPTLAPAGLEIMVEGH--AANGITAFPSTWELSSARSVNVLRYLVDRGGVAPGRIGAVAF 217 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G A +++ + NRR+D++V + Sbjct: 218 GSARQVNDDSTEELMELNRRVDVVVLSDKA 247 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 3/116 (2%) Query: 17 IKKKVAIDDTP---NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFG 73 +K++ P + W Y D +TVLM F+V++ ++ D + Sbjct: 1 MKRRRRGGHEPEEEHVDERWMASYMDMVTVLMCMFIVLFAMSTVDQAKFDKLRNSLATGF 60 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + + + P + + VD Q + + + Sbjct: 61 GAVASQTADTASGTVVPPDQVNKDAEAFSSLDLAIKEVDKLTALQQQMETALKAQQ 116 >gi|319955585|ref|YP_004166852.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319424245|gb|ADV51354.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 275 Score = 95.7 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 11/189 (5%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVL 216 D+ NK + LSK + K ++D + IS L +AD+ V Sbjct: 78 SSVDDITVMSNKTKEKMKATLSKVDPALLANAKTMEDSINLAISYNLKKSIADD-EDDVN 136 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 +T ++I+I D +F+ S + +L+KI +V+ + + GHTD+ Sbjct: 137 INIDKTVVMINISD---KLLFNSGSYTVSNKANNILKKIADVINSEPSMEVMVEGHTDSR 193 Query: 276 PFRNI-ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSAN 331 + +DNW LS+ RA S ++L K V+ +++ SG + + +D S N Sbjct: 194 TIQTPMFQDNWDLSVKRATSVVRILQKKYNVAPEKLIA-SGRSSFLPLVENDSKENRSKN 252 Query: 332 RRIDILVED 340 RR I++ Sbjct: 253 RRTRIVIIP 261 >gi|218778866|ref|YP_002430184.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760250|gb|ACL02716.1| OmpA/MotB domain-containing protein [Desulfatibacillum alkenivorans AK-01] Length = 281 Score = 95.7 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 27/159 (16%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 ++ V +T G LISI DQ +F+ +S P L ++ E++ + Sbjct: 98 LSAESSNQVDIRSTGNGSLISIRDQ---LLFEDGASSIKPSAKAFLTRLAEIINADNFPV 154 Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVL--------------MKSGVSE----- 306 I GHTD P + NW LS RA + Y+ GV+ Sbjct: 155 VITGHTDDRPPEEKGVQSNWELSARRAMAVYRFFYDQYLEQLAAREREANGGVAPVNLPN 214 Query: 307 --DRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + G + ++D + N R++IL++ R Sbjct: 215 KYPKRIDVYGCGPSQPVASNDTPQTRALNNRVEILMDKR 253 >gi|260174718|ref|ZP_05761130.1| OmpA/MotB domain protein [Bacteroides sp. D2] gi|315922978|ref|ZP_07919218.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696853|gb|EFS33688.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 297 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN-SQQSE 141 + +Q ++ K+ E + + ++ +++ + NN + S Sbjct: 21 VSQKQFKGLKTDYTKLQTEYQESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQS 80 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 SLT+ S+ ++ K D + N+ + + K K R L + + Sbjct: 81 ILNKSLTQSSQGNMNMGKLIDEINASNRFIQHLV-----------KEKNRSDSLNLVMVN 129 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ + ++ + + + + IS+ D ++ S + VL KI +++ Sbjct: 130 KLTRSLTREEMRDLDIKVLKGVVYISLADNM---LYKSGSYEISNKAEAVLSKIAKIIQD 186 Query: 262 S-TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318 + + G+TD P R R+NW LS RA S Q L G++ R++ +G Sbjct: 187 YKDYDVLVEGNTDTDPISRTNIRNNWDLSALRASSVVQALQNIYGINPKRLTA-AGRGEF 245 Query: 319 RLKIASDPMN--SANRRIDILVEDR 341 +D + NRR +I++ + Sbjct: 246 NPVAGNDTAEGKARNRRTEIIITPK 270 >gi|163788219|ref|ZP_02182665.1| putative flagellar motor protein MotB [Flavobacteriales bacterium ALC-1] gi|159876539|gb|EDP70597.1| putative flagellar motor protein MotB [Flavobacteriales bacterium ALC-1] Length = 285 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 14/211 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E K L + L KS+ + + L + + + RLQD + Sbjct: 60 EAMKEQLADMRKSNDALIKSSQDLTELTSQGATNLEKSLESLRESNLKITRLQDALTRKD 119 Query: 201 STLSGLVADNIVK------GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 S +V + + + + ISI D +F S +L K Sbjct: 120 SVTLAIVTSLKKEVGINDSDIEINVEKGVVFISIAD---KLLFKSGSYNVTDRANEILGK 176 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +V+ + + HTD + DNW LS+ RA + +VL V+ ++ Sbjct: 177 VAKVINSKPDFEAMVESHTDNKSYSKPPLLDNWDLSVKRATAIVRVLESLNVNPQQLIA- 235 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +G + + + +D + NRR I+V + Sbjct: 236 AGRSSYVPLVENDTAENRAKNRRTRIVVLPK 266 >gi|293369806|ref|ZP_06616382.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] gi|292635228|gb|EFF53744.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] Length = 297 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q+ Q Q EN S ++ + + + + D+ + + + + N + L Sbjct: 41 QESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQSILNKSLTQSSQGNMNMGKLI 100 Query: 180 KEKILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 E + +K K R L + + L+ + ++ + + + + IS+ D Sbjct: 101 DEINASNRFIQHLVKEKNRSDSLNLVMVNKLTRSLTREEMRDLDIKVLKGVVYISLADNM 160 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRLSLD 290 ++ S + VL KI +++ + + G+TD P R R+NW LS Sbjct: 161 ---LYKSGSYEISNKAEAVLSKIAKIIQDYKDYDVLVEGNTDTDPISRTNIRNNWDLSAL 217 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 RA S Q L G++ R++ +G +D + NRR +I++ + Sbjct: 218 RASSVVQALQNVYGINPKRLTA-AGRGEFNPVAGNDTAEGKARNRRTEIIITPK 270 >gi|303236640|ref|ZP_07323221.1| OmpA family protein [Prevotella disiens FB035-09AN] gi|302483144|gb|EFL46158.1| OmpA family protein [Prevotella disiens FB035-09AN] Length = 286 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 14/243 (5%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 S + ++ S Q + NN S Q K S +T+ Sbjct: 30 QSDNRRLNSEYQNAKETIAANNARIKSLEDQLAQAKASAQALQGSLDKSLSNTNSTNINI 89 Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 + + ++ ++ K + L +S+ L+ ++ +K V + + + IS+ Sbjct: 90 SKLVDQINESNQYIRHLVEVKSKSDSLNLVLSNNLTRSLSKEELKEVDVQVLKGVVYISL 149 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------ 281 D ++ S L KI +++ + I G+TD P + Sbjct: 150 ADNM---LYKSGSYEISDRAEETLSKIAKIITDYSDYDVLIEGNTDNVPVNAQSERMKNI 206 Query: 282 RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R+NW LS RA S Q L + GV R++ G + +D NRR I++ Sbjct: 207 RNNWDLSCLRASSVVQYLQTRFGVDPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIII 265 Query: 339 EDR 341 + Sbjct: 266 TPK 268 >gi|15595276|ref|NP_248768.1| hypothetical protein PA0078 [Pseudomonas aeruginosa PAO1] gi|116054405|ref|YP_788234.1| hypothetical protein PA14_00925 [Pseudomonas aeruginosa UCBPP-PA14] gi|254243187|ref|ZP_04936509.1| hypothetical protein PA2G_03990 [Pseudomonas aeruginosa 2192] gi|296386560|ref|ZP_06876059.1| hypothetical protein PaerPAb_00450 [Pseudomonas aeruginosa PAb1] gi|9945903|gb|AAG03468.1|AE004447_1 hypothetical protein PA0078 [Pseudomonas aeruginosa PAO1] gi|115589626|gb|ABJ15641.1| hypothetical protein PA14_00925 [Pseudomonas aeruginosa UCBPP-PA14] gi|126196565|gb|EAZ60628.1| hypothetical protein PA2G_03990 [Pseudomonas aeruginosa 2192] Length = 449 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ +AD+I + + S++ R +F +S+ E +L +I + L Sbjct: 307 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 364 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW+LS RA +L + R + G + Sbjct: 365 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 423 Query: 321 K--IASDPMNSANRRIDILV 338 AS + NRR++I V Sbjct: 424 VATNASAEGRARNRRVEITV 443 >gi|114763629|ref|ZP_01443023.1| hypothetical protein 1100011001335_R2601_16020 [Pelagibaca bermudensis HTCC2601] gi|114543630|gb|EAU46643.1| hypothetical protein R2601_16020 [Roseovarius sp. HTCC2601] Length = 465 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 10/148 (6%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + A+ +++ L + + + V E++ + + I MF +S P V+ Sbjct: 321 ETAESVTAFLQPEIDEGL---VTVESSGNTLTVQIS---GANMFAPASDTLEPRFAEVVD 374 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++ L I + GH+D P N LSL RA + + ++ V RIS Sbjct: 375 RVAGALNEEGGQIIVAGHSDNIPINTARFPSNLALSLARAKFVMERISQTLVDSSRISA- 433 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILV 338 G A ++D + NRRI++++ Sbjct: 434 EGRADREPIASNDTPEGRAKNRRIEVIL 461 >gi|89891804|ref|ZP_01203306.1| putative flagellar motor protein MotB [Flavobacteria bacterium BBFL7] gi|89515959|gb|EAS18624.1| putative flagellar motor protein MotB [Flavobacteria bacterium BBFL7] Length = 287 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 13/157 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETI 249 A + +L+ +A NI K + ++ + +SI + + +F SS + Sbjct: 111 ATTLKDSLNIAIAHNIAKKMGSTSSDKDLNVSIEETVVMINIDDDLLFKDSSYRVSNDAD 170 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR--DNWRLSLDR-AYSAYQVLMKSGVS 305 +L KI EV+A I + GHTD+ + + DNW LS +R A ++ K GV+ Sbjct: 171 EILAKIAEVVASEPSLEILVEGHTDSRTVKQGSYIKDNWDLSTERSAAIVRRLEEKFGVA 230 Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 +++ ++G A + A+D + + NRR I++ Sbjct: 231 PEQLI-VAGRASYDPIAANDSKDNMARNRRTQIVIMP 266 >gi|107099070|ref|ZP_01362988.1| hypothetical protein PaerPA_01000079 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ +AD+I + + S++ R +F +S+ E +L +I + L Sbjct: 307 RLARFLADDIKAQRV--AVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRK 364 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW+LS RA +L + R + G + Sbjct: 365 VKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTA-EGRSDTEP 423 Query: 321 K--IASDPMNSANRRIDILV 338 AS + NRR++I V Sbjct: 424 VASNASAEGRARNRRVEITV 443 >gi|308271290|emb|CBX27898.1| hypothetical protein N47_G32220 [uncultured Desulfobacterium sp.] Length = 310 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 17/285 (5%) Query: 60 DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 + + F P + + + ++ E S DL+ + G Sbjct: 39 QASEGPAEQFAPAELHKAHEALAVAEQSFIDEPDSHTTKDLAY----VAQRKSEQAGVLG 94 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE-KGKDLCKSTDLEKSINKEENYFLPPL 178 + ++N QQ+E K S+ + K +L+K +E Sbjct: 95 AMAANKEVKNKSNAEFRDQQTEIVKQGKQNLSDSEMKTTAARAELDKLATVKEVKDKSDA 154 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 A ++ Q+L S + + K + G+++++ +F Sbjct: 155 EFRNQQAEIVEQGKQNLFD--SEMRTAAAQAELAKLAAVKEEERGLVVTLS---GGVLFQ 209 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 + S LP V L ++ + L + + GHTD+ N LS RA + Sbjct: 210 SAKSTLLPSAQVKLDQVAKALLSIPARNLIVEGHTDSI---GSESYNQGLSQRRADAVRD 266 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 L++ G DRI + G + + NRR++I++E Sbjct: 267 YLVQKGYPADRI-QARGKGEGSPIADNTSPEGRANNRRVEIVIER 310 >gi|42526179|ref|NP_971277.1| OmpA family protein [Treponema denticola ATCC 35405] gi|41816291|gb|AAS11158.1| OmpA family protein [Treponema denticola ATCC 35405] Length = 422 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 10/154 (6%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + K + V D ++ E T G+ ISI F +S+I Sbjct: 276 EVKKIDKAAEEEIKKSVEDLNLENTTIEKTDEGLTISI----ENIQFLPNSAILRESEKE 331 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L+KIGE+L + I GHT + LS +RA + L++ GV + Sbjct: 332 KLKKIGEILLKFPDREFLISGHT---ALAGTEEERQALSEERAAAVANYLIELGVQKREH 388 Query: 310 SKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341 GF R A++ P N + NRR++I + D+ Sbjct: 389 VYTRGFGARRPVAANNSPENMAKNRRVEITILDK 422 >gi|145298369|ref|YP_001141210.1| flagellar motor protein MotB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851141|gb|ABO89462.1| Flagellar motor protein MotB [Aeromonas salmonicida subsp. salmonicida A449] Length = 305 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 11/186 (5%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGV 215 L ++ + P ++ + +K+ L + ++ + LV +VK Sbjct: 77 LNGEVSAASAVLESARQDSPSIAPISGVPIKQDGTTLATIDTQLQENMGSLVEAGVVK-- 134 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + + + + +F S+ VL + +L + +RG+TD Sbjct: 135 -LTLDDNWLTVELS---SGLLFGSGSAFMSTNAEPVLNTLSSILKPVDNYVRVRGYTDNQ 190 Query: 276 PFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 N I R NW LS RA + L+ GV+ R+ + +D NR Sbjct: 191 QINNEIFRSNWTLSAARAEAVLTALIAKGVAPQRL-AYEAYGEFSPFAGNDSEQGRLQNR 249 Query: 333 RIDILV 338 ++ + + Sbjct: 250 KVVVAI 255 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 1/136 (0%) Query: 17 IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 ++K+ + +L W + YAD+MT++ A F+V++ + + D +A+ Sbjct: 1 MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMTQAFNV 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S G+ + + + ++ E ++S + S KQ I Sbjct: 61 MPPRSDGLLEGLGTSLLNGEVSAASAVLESARQDSPSIAPISGVPIKQDGTTLATIDTQL 120 Query: 136 NSQQSEHCKNSLTRDS 151 + + + + Sbjct: 121 QENMGSLVEAGVVKLT 136 >gi|77460334|ref|YP_349841.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77384337|gb|ABA75850.1| putative outer membrane protein [Pseudomonas fluorescens Pf0-1] Length = 270 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + + L +R + +K +S G + + + T Sbjct: 89 SEIAREHTNQVLNEERVAKLELERQRLQLALRESKLLSVQQQGKWLEEQIVALATTQTDR 148 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G+++++ D +FD + V+ KI + L + + I I G+TD++ Sbjct: 149 GLVMTLGD----VLFDTGEAELKNSANRVVLKIVQFLQLNPKRIVRIEGYTDST---GGK 201 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 ++N +LS DRA S VL G+ E RI ++ G+ A+ + + NRR++I+ Sbjct: 202 QENLKLSRDRAQSVADVLTDLGIDEKRI-QVEGYGDEYPVDANASERGRAQNRRVEIVFS 260 Query: 340 DRQG 343 D +G Sbjct: 261 DEKG 264 >gi|261342404|ref|ZP_05970262.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] gi|288315039|gb|EFC53977.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] Length = 451 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 13/157 (8%) Query: 191 RLQDLAKKISS-----TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIP 244 +QDL+ ++ L+ L+ + I + +L + ++ + + + +F S Sbjct: 297 AMQDLSVPVAQPAMRLKLAVLLRNEIRQQLLSVDESQKQSKVVL---KGDALFLSGSVRV 353 Query: 245 LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 PE + V+++I + + I GHTDA+P +N LS RA Q + +G Sbjct: 354 QPEMVKVIERIASEVRRVNGDVVIVGHTDATPISRPGLPNNVVLSEKRAAEVAQYFISAG 413 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + E ++ K+ G + + + NRR++ V Sbjct: 414 LPESKV-KVRGVGSSQPVASDATAQGRAKNRRVEFFV 449 >gi|167567883|ref|ZP_02360799.1| hypothetical protein BoklE_35363 [Burkholderia oklahomensis EO147] Length = 421 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 R+ MF ++ ++ KI + +++ G+TD P ++ N LS + Sbjct: 311 RSDAMFSPGAAAVNSTMGPLIAKIAGEIVKVPGKVTVTGYTDNVPIKSRQFASNEALSEE 370 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA Q+L +GV R+ + G + + NRR+DI V Sbjct: 371 RATQVMQMLQSAGVPASRLESV-GKGDADPIGDNGTVQGRALNRRVDITV 419 >gi|227536270|ref|ZP_03966319.1| flagellar motor protein MotB [Sphingobacterium spiritivorum ATCC 33300] gi|227243877|gb|EEI93892.1| flagellar motor protein MotB [Sphingobacterium spiritivorum ATCC 33300] Length = 301 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 16/234 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q+ Q E S +Q + K + + E +L K+ D + N + N + L Sbjct: 49 QQGQLDLTEGRTRIKSLEEQLAYEKANNAQLKEAYANLQKTLDNSINQNSQGNVNISKLV 108 Query: 180 KEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 E + K + L + K +++ L+ ++ +K V + + + IS+ D Sbjct: 109 DEINASNKYIQHLVNTKNKSDSLNMVLTNNLTRSLSREEMKDVDVQVLKGVVYISLSDNM 168 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLD 290 ++ S + L KI +++ + I G+TD P R+NW LS Sbjct: 169 ---LYKSGSYEISDKAGETLSKIAKIIQDYKDYEVLIEGNTDTDPISKTNIRNNWDLSTL 225 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 RA S Q L GV R++ G + + NRR I++ + Sbjct: 226 RASSVVQALQNTYGVDPKRLTA-GGRGQYNPIADNSTAAGKMKNRRTQIIITPK 278 >gi|309782503|ref|ZP_07677227.1| OmpA domain protein [Ralstonia sp. 5_7_47FAA] gi|308918840|gb|EFP64513.1| OmpA domain protein [Ralstonia sp. 5_7_47FAA] Length = 415 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 6/142 (4%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ L+ L+ D I +G + S + R MF + + +L KI Sbjct: 273 KVVLRLAELLKDEIARGQV--KVEEDATHSAVTFRGDDMFAGGRADVNAKVQPLLDKIAS 330 Query: 258 VLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + +++ GH+D P + N LS +RA + L GV++ R+ + G Sbjct: 331 EITKVPGKVTVTGHSDNQPIKTAKFPSNQVLSEERAVHVSEYLASRGVAQGRLEAV-GKG 389 Query: 317 HHRLKIASDP--MNSANRRIDI 336 + +ANRR+ I Sbjct: 390 DTEPVADNSTWNGRAANRRVQI 411 >gi|160884511|ref|ZP_02065514.1| hypothetical protein BACOVA_02495 [Bacteroides ovatus ATCC 8483] gi|298481223|ref|ZP_06999417.1| OmpA family protein [Bacteroides sp. D22] gi|156110250|gb|EDO11995.1| hypothetical protein BACOVA_02495 [Bacteroides ovatus ATCC 8483] gi|298272797|gb|EFI14364.1| OmpA family protein [Bacteroides sp. D22] Length = 297 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q+ Q Q EN S ++ + + + + D+ + + + + N + L Sbjct: 41 QESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQSILNKSLTQSSQGNMNMGKLI 100 Query: 180 KEKILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 E + +K K R L + + L+ + ++ + + + + IS+ D Sbjct: 101 DEINASNRFIQHLVKEKNRSDSLNLVMVNKLTRSLTREEMRDLDIKVLKGVVYISLADNM 160 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRLSLD 290 ++ S + VL KI +++ + + G+TD P R R+NW LS Sbjct: 161 ---LYKSGSYEISNKAEAVLSKIAKIIQDYKDYDVLVEGNTDTDPISRTNIRNNWDLSAL 217 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 RA S Q L G++ R++ +G +D + NRR +I++ + Sbjct: 218 RASSVVQALQNIYGINPKRLTA-AGRGEFNPVAGNDTAEGKARNRRTEIIITPK 270 >gi|117621479|ref|YP_855927.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562886|gb|ABK39834.1| ompA family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 308 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 75/212 (35%), Gaps = 11/212 (5%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK- 189 I ++ + ++ + + L S+ + P L+ ++ + + Sbjct: 51 IDGMTQAFNVMQPRSDGLLEGQGKSLLNNEVSAASSVLESATARSPSLAPISVVPIAQDG 110 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 L + ++ ++ LV +VK + + + + +F S+ Sbjct: 111 MTLAKIDTQLQESMGSLVDAGVVK---LTLNDNWLTVELS---SGLLFGSGSAFMSTNAD 164 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + +L + +RG+TD N I R NW LS RA + L+ G++ R Sbjct: 165 PVLNTLSSILKQVDNYVRVRGYTDNQQINNEIFRSNWTLSAARAEAVLTALIAKGIAPQR 224 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 + + + NR++ + + Sbjct: 225 L-AYEAYGEFSPFTDNSTEQGRLQNRKVVVAI 255 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 1/136 (0%) Query: 17 IKKKVAIDDTP-NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKN 75 ++K+ + +L W + YAD+MT++ A F+V++ + + D +A+ Sbjct: 1 MRKRYRLHLQGREHLDRWLVSYADYMTLIFALFVVLYSVALVNKDKYRAVIDGMTQAFNV 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 + S G+ + Q +++ S+ E T S L S Q I Sbjct: 61 MQPRSDGLLEGQGKSLLNNEVSAASSVLESATARSPSLAPISVVPIAQDGMTLAKIDTQL 120 Query: 136 NSQQSEHCKNSLTRDS 151 + + + Sbjct: 121 QESMGSLVDAGVVKLT 136 >gi|310817527|ref|YP_003949885.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309390599|gb|ADO68058.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 1779 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 22/280 (7%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F TA E P D DE + + + G + Q + Sbjct: 1506 FRILAGVNWTAKPRAKPEPAPVCPLGPEDKDGFEDEDGCADPDNDQDGFPDVSDQCPNVP 1565 Query: 129 NNIFYLSN-----SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + + + + ++ + + E+ P ++ I Sbjct: 1566 ETVNGFEDGDGCPDEVPAPVDSDGDGLTDDKDRCPNQPEDKDGFEDEDGCPDPDNDQDGI 1625 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L K + G G I I+ F + I Sbjct: 1626 LDGSDKCPNEPEVINGREDEDGCPDQG-----EVNVRVEGKKILIL---QKVYFATNKDI 1677 Query: 244 PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-M 300 L + +L+++ VL + + I + GHTD+ N LS RA S L Sbjct: 1678 ILDRSFSLLKQVAAVLRANPQLTKIRVEGHTDSQ---GSDAFNLDLSDRRAKSVRTYLIE 1734 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 K G++ DR+ + G+ + +D + NRR++ ++ Sbjct: 1735 KEGIAADRLEAV-GYGETKPVDTNDTVAGRENNRRVEFII 1773 >gi|323524556|ref|YP_004226709.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1001] gi|323381558|gb|ADX53649.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1001] Length = 442 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 2/109 (1%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 R MF ++ ++ KI + + + G+TD P R+ N LS + Sbjct: 332 RGDAMFPPGAASVNASMAPLIAKIAAEIVKVPGKVMVFGYTDNVPIRSRQFASNDALSAE 391 Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 RA Q+L SGV R+ + G A + + NRR++I V Sbjct: 392 RATQVLQMLQASGVPAGRLEAVGRGEAAPVGDNRTAQGRAQNRRVEIAV 440 >gi|241663269|ref|YP_002981629.1| type VI secretion system OmpA/MotB family protein [Ralstonia pickettii 12D] gi|240865296|gb|ACS62957.1| type VI secretion system OmpA/MotB family protein [Ralstonia pickettii 12D] Length = 415 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 6/142 (4%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K+ L+ L+ D I +G + S + R MF + + +L KI Sbjct: 273 KVVLRLAELLKDEIARGQV--KVEEDATHSAVTFRGDDMFAGGRADVNAKVQPLLDKIAS 330 Query: 258 VLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + +++ GH+D P + N LS +RA + L GV++ R+ + G Sbjct: 331 EITKVPGKVTVTGHSDNQPIKTAKFPSNQVLSEERAVHVSEYLASRGVAQGRLEAV-GKG 389 Query: 317 HHRLKIASDP--MNSANRRIDI 336 + +ANRR+ I Sbjct: 390 DTEPVADNSTWNGRAANRRVQI 411 >gi|281421937|ref|ZP_06252936.1| OmpA family protein [Prevotella copri DSM 18205] gi|281403991|gb|EFB34671.1| OmpA family protein [Prevotella copri DSM 18205] Length = 284 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 15/252 (5%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 + + + + K S+N + ++L L+ +Q+ S + D + Sbjct: 22 ASKKDLQNCQNENKELSSNYQATKEKLAATEASLAAAQEQLATAKSDYAKLQNSLDKSLN 81 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFET 219 + +++ E+ S + I + K D L +++ L+ ++ +K V + Sbjct: 82 NASQNNVSIEKLVDQINESNQYIRHLVEVKSKSDSLNMVLTNNLTRSLSKEEMKEVDVQV 141 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFR 278 + + IS+ D ++ S L KI +++ + + G+TD P Sbjct: 142 LKGVVYISLADNM---LYQSGSYEVNSRAQETLSKIAKIITDYKDYDVLVEGNTDNVPVS 198 Query: 279 NIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NS 329 + R+NW LS RA S Q L GV+ R++ G + +D Sbjct: 199 TTSAKMKNIRNNWDLSALRAASVVQYLQDHFGVNPKRLTA-GGRGEYNPVTTNDTEVGKQ 257 Query: 330 ANRRIDILVEDR 341 NRR I++ + Sbjct: 258 RNRRTQIIITPK 269 >gi|30249028|ref|NP_841098.1| outer membrane protein [Nitrosomonas europaea ATCC 19718] gi|30138645|emb|CAD84936.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718] Length = 220 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 11/147 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 +KK+ + GV+ T ++++I + FD S+ P+ +L Sbjct: 72 SKKMEEQKIQMENATAGTGVVVSQTPDNQLMLNI---PSDISFDTGSAQIKPDFRPILDS 128 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 L ++ ++I GHTD++ + A +N LS++RA S + L GV RI +I Sbjct: 129 FATSLLNNPGTRVTIVGHTDST--GSDAVNN-PLSVNRAASTREYLASRGVPFQRI-QID 184 Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338 G ++ +++ + NRR++I V Sbjct: 185 GRGSYQPVASNNTAAGRAKNRRVEIYV 211 >gi|300772310|ref|ZP_07082180.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760613|gb|EFK57439.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 301 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 16/234 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q+ Q E S +Q + K + + E +L K+ D + N + N + L Sbjct: 49 QQGQLDLTEGRTRIKSLEEQLAYEKANNAQLKEAYANLQKTLDNSINQNSQGNVNISKLV 108 Query: 180 KEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 E + K + L + K +++ L+ ++ +K V + + + IS+ D Sbjct: 109 DEINASNKYIQHLVNTKNKSDSLNMVLTNNLTRSLSREEMKDVDVQVLKGVVYISLSDNM 168 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLD 290 ++ S + L KI +++ + I G+TD P R+NW LS Sbjct: 169 ---LYKSGSYEISDKAGETLSKIAKIIQDYKDYEVLIEGNTDTDPISKTNIRNNWDLSTL 225 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 RA S Q L GV R++ G + + NRR I++ + Sbjct: 226 RASSVVQALQNTYGVDPKRLTA-GGRGQYNPIADNSTAAGKMKNRRTQIIITPK 278 >gi|254253396|ref|ZP_04946714.1| Outer membrane protein [Burkholderia dolosa AUO158] gi|124896005|gb|EAY69885.1| Outer membrane protein [Burkholderia dolosa AUO158] Length = 317 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P G + + P +S + + IT + G + Sbjct: 44 TPVGNGTVATAALPAPNAGAPGTASGTVVRGTAG-TITPPPANAVPGQVVVGGKVPDEAT 102 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 L + + N + + + D+ + ++ K L +SK ++ + Sbjct: 103 KAAVLQKLRDTYGAANVVDQI--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQ 160 Query: 190 KRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + + ++I+S ++ + I + + G+L + R F+ S Sbjct: 161 IEMKGEVHNEAQRQQIASDMANTLNPTYTIKNALRVSASEQGLLDQTLANRTIE-FETGS 219 Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P+ +L ++ L+ + I GHTD N LS RA + L+ Sbjct: 220 ATLTPQGRQILDQMAAALSKLQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLI 276 Query: 301 KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 G+ +++ +G + +D + NRRI+ Sbjct: 277 TKGIPPQQMT-TTGVGPDQPIAPNDMAEGRARNRRIE 312 >gi|237718629|ref|ZP_04549110.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452089|gb|EEO57880.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 290 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q+ Q Q EN S ++ + + + + D+ + + + + N + L Sbjct: 34 QESQLQLRENQARSTSLEERLAEAQRNNSELRKSLSDMQSILNKSLTQSSQGNMNMGKLI 93 Query: 180 KEKILA-------MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 E + +K K R L + + L+ + ++ + + + + IS+ D Sbjct: 94 DEINASNRFIQHLVKEKNRSDSLNLVMVNKLTRSLTREEMRDLDIKVLKGVVYISLADNM 153 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPF-RNIARDNWRLSLD 290 ++ S + VL KI +++ + + G+TD P R R+NW LS Sbjct: 154 ---LYKSGSYEISNKAEAVLSKIAKIIQDYKDYDVLVEGNTDTDPISRTNIRNNWDLSAL 210 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 RA S Q L G++ R++ +G +D + NRR +I++ + Sbjct: 211 RASSVVQALQNIYGINPKRLTA-AGRGEFNPVAGNDTAEGKARNRRTEIIITPK 263 >gi|326386301|ref|ZP_08207925.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] gi|326209526|gb|EGD60319.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 8/145 (5%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L GV ++ G I +++ + FD S++ P L K+ + Sbjct: 78 MDKQIKELKEKTAGSGVDVKSVDDGQAI-LVNLPSGVTFDTDSTVIKPGFRDTLDKVADS 136 Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I + GHTD++ N LS +RA L GVS RI + +GF Sbjct: 137 LNRYPNSLIDVYGHTDST---GSDAYNQTLSENRARVVADYLSSKGVSSARI-RSTGFGK 192 Query: 318 HRLKIASDP--MNSANRRIDILVED 340 + ++D +ANRR++I + Sbjct: 193 TQPVASNDTPEGRAANRRVEIKIVP 217 >gi|291336864|gb|ADD96396.1| OmpA/MotB domain containing protein [uncultured organism MedDCM-OCT-S09-C206] Length = 211 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 11/207 (5%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N + + ++ G + L S+N+ A ++++ Sbjct: 10 NEARENAGAGASEQEVLFGGIEGELEKLAASMNEASPQNGEGPGGSSQEAYQKQQNASRT 69 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +++++ L + +V+ E + I++ + F ++ E +L +I Sbjct: 70 TEELTTALKQQIDQGLVE---VEQRDDKVFITV---GSGGAFPSGTADLTEEAQRILDRI 123 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGV-SEDRISKIS 313 I++ GHTD P +N RDNW L+ RA S Q + ++G+ DR+S +S Sbjct: 124 SLAAMSPKSTITVTGHTDDVPIKNAQFRDNWDLAAGRASSVVQAIQRTGLIDGDRLSAVS 183 Query: 314 GFAHHRLK--IASDPMNSANRRIDILV 338 A+ S NRRI+I + Sbjct: 184 -KGETAPLADNATAAGRSENRRIEIEI 209 >gi|32266001|ref|NP_860033.1| flagellar motor protein MotB [Helicobacter hepaticus ATCC 51449] gi|32262050|gb|AAP77099.1| flagellar motor component MotB [Helicobacter hepaticus ATCC 51449] Length = 251 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 11/170 (6%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 P S + + + + SS S + +G + E G+ + + + Sbjct: 62 SPLNSDQDDVNDSETENESGAISESSSVTSAEIEQMAEEGGILEQMEMGMSLRL---PSN 118 Query: 235 PMFDKSSSIPLPETIVV-LQKIGEVLAHST--EVISIRGHTDASP--FRNIARDNWRLSL 289 FD S+ + + LQ++ ++ I +RG+TD +P + +DN+ LS Sbjct: 119 LFFDSGSAEINNSDVFLYLQRMSAIIKKLPDYVKIDVRGYTDNAPLPVGSRYKDNYELSS 178 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 R+ S + L+K+G+S +RI SG+ H+ +D + N R++I Sbjct: 179 ARSLSVMKNLIKNGISPERI-SFSGYGEHQAIAPNDSALNRAKNNRVEIF 227 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 4/147 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I++T + + ++ F Sbjct: 1 MAKKKKCPECPA-GEKWAVPYADFLSLLLALFIALWAISSTSNADSELLKTEFVKIFDFT 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI---GSTNQKKQYQRLENNIFY 133 +T+ + + +S +T ++ G Q + L Sbjct: 60 LTSPLNSDQDDVNDSETENESGAISESSSVTSAEIEQMAEEGGILEQMEMGMSLRLPSNL 119 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKS 160 +S +E + + ++ + K Sbjct: 120 FFDSGSAEINNSDVFLYLQRMSAIIKK 146 >gi|114777571|ref|ZP_01452552.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] gi|114552042|gb|EAU54559.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] Length = 258 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 20/181 (11%) Query: 165 KSINKEENYFLPPLS--KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++++ + LP S + K L D+AK++ + + ++ Sbjct: 65 ANLDEGKGPALPTRSIVDGSTAPKRTAKELTDIAKELGQGDAIEI---------MPLDKS 115 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 + I F P+ ++ K+ + I I GHTDA+P +N Sbjct: 116 SLRIRF---PEHIAFAAGHVDLSPKARTLIDKLAIIFQKPEVTEIQIEGHTDATPTKNSD 172 Query: 282 R-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 NW LS RA + + L + GV R+ +G I P S RR+DI ++ Sbjct: 173 YPSNWELSAARAMAVFHELAEQGVPRGRMIA-AGMGDQHP-IKGHPELS--RRVDITLKF 228 Query: 341 R 341 R Sbjct: 229 R 229 >gi|319793927|ref|YP_004155567.1| type IV / vi secretion system protein, dotu family [Variovorax paradoxus EPS] gi|315596390|gb|ADU37456.1| type IV / VI secretion system protein, DotU family [Variovorax paradoxus EPS] Length = 458 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 20/194 (10%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K + L S D+E+ I PP + R K L LA +I+ + D Sbjct: 269 KYQLLQTSADVEQRIAAIGRMRPPPAPPAPAVKPLRLKEL--LASEIARGTVSVDEDEHR 326 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 V F R MF + + + VL K+ + + + + + GH+ Sbjct: 327 SAVSF--------------RGDDMFVPGQARLNAKILPVLDKVADEINQVSGSVQVTGHS 372 Query: 273 DASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329 D P + +N LS RA + VL+ GV RI + G A+ + Sbjct: 373 DNRPIKTREFPNNQVLSEKRADAVTAVLLGKGVVASRI-RTEGRGDTMPVADSATAAGRA 431 Query: 330 ANRRIDILVEDRQG 343 NRR+DI+V G Sbjct: 432 RNRRVDIVVIQGDG 445 >gi|86160609|ref|YP_467394.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85777120|gb|ABC83957.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 248 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVIS 267 + K + T G+L+ + + +FD SS PE I L+++G++LA + I Sbjct: 117 KELEKIAETKRTENGLLVEM---KGDILFDSGSSALKPEAIGKLEQMGDILAKYGDDRIR 173 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325 I G+TD++ +++ N LSL RA + +VL+ GV E +I+ + G R + Sbjct: 174 IEGYTDSTGSKSM---NEELSLRRADAVKRVLVGRGVQEKQITAL-GMGPVRPVADNGSA 229 Query: 326 PMNSANRRIDILVE 339 + NRR+++ ++ Sbjct: 230 TGRAQNRRVELHID 243 >gi|159186121|ref|NP_356322.2| OmpA-like porin [Agrobacterium tumefaciens str. C58] gi|159141255|gb|AAK89107.2| OmpA-like porin [Agrobacterium tumefaciens str. C58] Length = 501 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 18/194 (9%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 +E L + E + P K +A ++ RL+ K+ + L V Sbjct: 294 PTETPSVLISNPPPHPPAQVEIPRVVEPP---KTVAPRQPSRLE----KLMAFLQPEVDK 346 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + V + + I N+ +F S+ P+ ++Q+IG LA + Sbjct: 347 KL---VTLADVNGRLRVRI---NNSGLFTTGSADVSPQFRDLIQRIGGALAAEKFRAVVI 400 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 G+TD P + + NW LS RA + +L + + ++ G A ++ Sbjct: 401 GYTDTVPIKTVEFPSNWHLSEARAKAVGDILSQFTGPDAILT--EGRADSDPIADNKTEE 458 Query: 327 MNSANRRIDILVED 340 NRR +I+V Sbjct: 459 GRQINRRTEIMVLT 472 >gi|91202869|emb|CAJ72508.1| similar to flagellar motor protein MotB [Candidatus Kuenenia stuttgartiensis] Length = 223 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 13/196 (6%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL--VADNI 211 G C D + +N+ + + S E + + + K + L +A++I Sbjct: 18 GMTGCAELDELRVLNRRQAITIRDQSDEIARYRNQLTSMSEKIKASEEEMEKLRKLAESI 77 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 GV T G +I +FD + L+K+ L + + I G Sbjct: 78 GGGVSVRDTFEGPVILF---PEMILFDSGMATIKAHGEDALRKMARFLEENPASSLRIDG 134 Query: 271 HTDASPF---RNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP 326 HTD+ P +++ N LS RA S + L K G + E RI I+GF +R + Sbjct: 135 HTDSDPIIKTKHLWDSNHHLSAARALSVFHFLTKKGNIPEQRIH-IAGFGPNRPIAPNTT 193 Query: 327 MNSA--NRRIDILVED 340 NRR++ L+ Sbjct: 194 PAGKKENRRVEFLILP 209 >gi|73539085|ref|YP_299452.1| OmpA/MotB [Ralstonia eutropha JMP134] gi|72122422|gb|AAZ64608.1| OmpA/MotB [Ralstonia eutropha JMP134] Length = 575 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 I+ + +F S++ P + VL E++ + + + GHTDA A+ N +L Sbjct: 440 IELNSLSLFKSGSAVLNPGSNRVLIGALELIKAHPDKRVLVAGHTDAV---GAAQSNLKL 496 Query: 288 SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 S RA S L +G+ R I G+ R K +D SANRR++I + Sbjct: 497 SEARAASVRDWLADAAGLPVTRF-AIQGYGDTRPKAPNDTEAGRSANRRVEITLVP 551 >gi|296159295|ref|ZP_06842121.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. Ch1-1] gi|295890554|gb|EFG70346.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. Ch1-1] Length = 443 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 5/159 (3%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQRNTPMFDKSS 241 + + +K++ D+ + L ++K + + S + R MF + Sbjct: 283 SAEVRKQIADIGRMTPPATRALHLKELLKNEIAAGTVSVDEDAHHSSVTFRGDSMFPPGA 342 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300 + ++ KI +A + +S+ G+TD P ++ N LS +RA Q+L Sbjct: 343 AAVKTSMTPLITKIAGEIAKVSGKVSVLGYTDNVPIKSRQFASNAALSEERATQIMQMLQ 402 Query: 301 KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 +GV R+ + G A + + NRR++I V Sbjct: 403 TAGVPAVRLEAVGRGDADPVGDNTTVQGRAQNRRVEITV 441 >gi|332704885|ref|ZP_08424973.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332555034|gb|EGJ52078.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 222 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G TR G +I I++ FD S+ P+ VL + VL + + + G Sbjct: 92 LQGTGVSVTRQGDMI-ILNMPGNVTFDTGSAGIKPQFFEVLNSVAIVLKEYEKTYVDVLG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD++ N+ N RLS DRA S Q L+ GV ++R + G ++ + Sbjct: 151 HTDSTGSMNL---NMRLSQDRAQSVAQYLISQGVQQERFL-VRGMGPNQPIADNSTAAGR 206 Query: 331 --NRRIDILVED 340 NRR++I + Sbjct: 207 SQNRRVEIKLTP 218 >gi|319778087|ref|YP_004134517.1| type IV / vi secretion system protein, dotu family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171806|gb|ADV15343.1| type IV / VI secretion system protein, DotU family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 498 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 15/196 (7%) Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 ++ + + + + + E P + K+ ++ + ++ + G Sbjct: 308 ISNEGDAAAGELLALNPSIPVAIERASVAPLVEPAKVAPPAANAQIDRIRAALAKDVEG- 366 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 G+ T I++ I N +F + PE + I L H I Sbjct: 367 ------GGLAIGTKGDFIVVEI---NNLLLFQSGRAETKPEFQPIAADIAAALEHEPGPI 417 Query: 267 SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322 I GHTD R + + N+ LSL RA + + LM + S+ + G Sbjct: 418 RIVGHTDNVKPRRSSAFKSNFDLSLARAKAV-EALMAAKFSDPSRLTVDGKGEDEPIAEN 476 Query: 323 ASDPMNSANRRIDILV 338 A+ + NRR+D+++ Sbjct: 477 ATPEGRARNRRVDVMI 492 >gi|167574381|ref|ZP_02367255.1| hypothetical protein BoklC_31379 [Burkholderia oklahomensis C6786] Length = 421 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 R+ MF ++ ++ KI + +++ G+TD P + N LS + Sbjct: 311 RSDAMFSPGAAAVNSTMGPLIAKIAGEIVKVPGKVTVTGYTDNVPINSRQFASNEALSEE 370 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA Q+L +GV R+ + G + + NRR+DI V Sbjct: 371 RATQVMQMLQSAGVPASRLESV-GKGDADPIGDNGTVQGRALNRRVDITV 419 >gi|116694470|ref|YP_728681.1| hypothetical protein H16_B0519 [Ralstonia eutropha H16] gi|113528969|emb|CAJ95316.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 215 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ + + L+ +A T I I + Sbjct: 43 ELSARLEAEVKQRQEEAQRRETLEKALAAPLAAG-------RVTLVNGRIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + + L+ E++ + G TD R R DNW LS Sbjct: 93 FALNSDQLQPEGRDLLKSLAQPLSAYLRSRDEILMVSGFTDDQQVREGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A + NRR++I Sbjct: 153 QRALTVTRTLIDAGIPPTSVFSAA-FGSQQPVTPNADAEGRAKNRRVEI 200 >gi|89053531|ref|YP_508982.1| hypothetical protein Jann_1040 [Jannaschia sp. CCS1] gi|88863080|gb|ABD53957.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 799 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 94/258 (36%), Gaps = 17/258 (6%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 + E + + + Q +Q R + + +++ + +D Sbjct: 544 EAETRETLLAQANIELAEAETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDRDEE 603 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 ++ ++ ++E+ A ++ LA + + L ++ + Sbjct: 604 AQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERLAAE-AQELERYRSEFFGRLRELL 662 Query: 219 TTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISI 268 R G+ I + +F+ S+ E + ++ + +L +I + Sbjct: 663 EGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWIIRV 722 Query: 269 RGHTDASPFRNI--ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325 GHTD R +NW LS RA + + + G+ R++ +GF HR +D Sbjct: 723 DGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAA-TGFGEHRPIAPND 781 Query: 326 PMN--SANRRIDILVEDR 341 +ANRRI++ + +R Sbjct: 782 TDEGQAANRRIELKLTER 799 >gi|304397299|ref|ZP_07379178.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB] gi|304355448|gb|EFM19816.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB] Length = 412 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +++ + V+Q+I + + + I + G++D P R+ N+ Sbjct: 281 SVVTLKGDGLFASAATDVRGRYVDVIQRIAAAMNNVSGQIQVIGYSDNVPIRSARFGSNF 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 LSL RA S +L + R+ G + ++ + NRR++I + Sbjct: 341 ELSLARARSVQSLLQQQLADPSRVKA-EGRGESNPLVPNNSAENRARNRRVEITLL 395 >gi|225620337|ref|YP_002721594.1| putative flagellar motor protein [Brachyspira hyodysenteriae WA1] gi|225215156|gb|ACN83890.1| putative flagellar motor protein [Brachyspira hyodysenteriae WA1] Length = 266 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP--LPETIVVLQK 254 + I S L ++ + V E G +IS+ + F+ +S+ + K Sbjct: 104 RSIDKATSVLESEIKSRKVRIEEDERGFIISLGADQ---YFESASTNLVDNQNNVETFIK 160 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNI------ARDNWRLSLDRAYSAYQVL----MKSGV 304 + VL+ + I GHTD+ +NW LS RA + + + Sbjct: 161 LASVLSGLPNDVRIEGHTDSGSIIPGSITEQKFGNNWGLSSARAMVILEKIFENDQAGKL 220 Query: 305 SEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 ++ I+G+A R ++D + NRR+DI+V Sbjct: 221 DRNK-YSIAGYADTRPVASNDLPDGRALNRRVDIVVVR 257 >gi|150024175|ref|YP_001295001.1| flagellar motor/chemotaxis (MotB)-related protein [Flavobacterium psychrophilum JIP02/86] gi|149770716|emb|CAL42180.1| Flagellar motor/Chemotaxis (MotB)-related protein [Flavobacterium psychrophilum JIP02/86] Length = 320 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 113/313 (36%), Gaps = 26/313 (8%) Query: 45 MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104 + ++ + +E F K S E K +D Sbjct: 7 LGLLVLSLTTSCVSKKIFADLETKFAELKKERNALSD-------ENETLKTTKNQFQLDN 59 Query: 105 HITKNSVDLKIGSTNQ-KKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKST 161 K +D ++ Y NN+ L +S + ++ SL + +K +DL Sbjct: 60 ATLKTELDKLKAERDKLAADYAASSNNLKTLQSSYNALEKNSDESLKANMDKNRDLLAQL 119 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL-------AKKISSTLSGLVADNIVKG 214 + ++ E L LS + R L+ L KK+ TLS + KG Sbjct: 120 EAKEKALAAEKGRLAKLSGDLKDRSDRVNELEALIAAKEASMKKLKETLSKSLKAFEGKG 179 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + + +S+ N +F+ S E + + +VL + ++ I I GHTD Sbjct: 180 LTVQQKDGKVYVSM---ENKLLFESGSWAVGTEGKKAVVAVAKVLGDNPDISILIEGHTD 236 Query: 274 ASPFRNIA---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 F +NW LS RA S +L ++ + +G +++D Sbjct: 237 NDKFAGAVGQIENNWDLSTKRATSIVNILGENPKVNKQNLTAAGRGEFSPLMSNDTPEGK 296 Query: 329 SANRRIDILVEDR 341 + NRRI+I++ + Sbjct: 297 AKNRRIEIILTPK 309 >gi|126741155|ref|ZP_01756836.1| hypothetical protein RSK20926_01547 [Roseobacter sp. SK209-2-6] gi|126717792|gb|EBA14513.1| hypothetical protein RSK20926_01547 [Roseobacter sp. SK209-2-6] Length = 474 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 10/155 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +++ K+S L +A IVK + G + II + MF S Sbjct: 326 IEEQIAKVSGFLEPEIAGGIVK-----VFQKG-NVLIIRLAGSGMFGSGSDQLSKAFRTP 379 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +Q++ E L + + GH+D P R+ N LSL RA S + + K+ +R+S Sbjct: 380 VQRLAEALNDEKGQVIVVGHSDNIPIRSSRFPSNMALSLARAKSVMEGMAKAMAEPERLS 439 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 G A + + NRRI+IL+ G Sbjct: 440 A-EGRADQEPIADNGTKAGRAKNRRIEILLVQEVG 473 >gi|91215422|ref|ZP_01252393.1| outer membrane protein, OmpA/MotB family [Psychroflexus torquis ATCC 700755] gi|91186374|gb|EAS72746.1| outer membrane protein, OmpA/MotB family [Psychroflexus torquis ATCC 700755] Length = 457 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 94/298 (31%), Gaps = 18/298 (6%) Query: 52 WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 W + K + + F + S G+ + D + Sbjct: 161 WFTDNIAFTVKSSFKTAFEDDNFDYFQHSAGLTIAFGGTDSDGDGVYDKNDMCPDVPGLA 220 Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN--- 168 + + ++ + ++ + C +S + D C + +++N Sbjct: 221 EFNGCPDSDGDGITDKDDKCPDTAGLEEFDGCADSDSDGIADPNDDCPNEAGTEALNGCP 280 Query: 169 -------KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 +N P + K + VA E T Sbjct: 281 DADNDGIANKNDDCPNEAGPKANNGCPYPDADGDGVLDKDDMCPDVAGTEANNGCPEVTE 340 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 I + + T F+ + + L I +L ++ GHTD+ Sbjct: 341 E-IQKELNEYAKTINFETGKTTISKNSEEALTAIIAILDEYPNAKFTVEGHTDSV---GS 396 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 A++N LS RA S L+K+GV E R+S +GF + ++D + NRR++I Sbjct: 397 AKNNESLSEARALSVKSYLVKNGVDEFRLSS-AGFGEQKPVESNDTKAGRAENRRVEI 453 >gi|149925997|ref|ZP_01914260.1| hypothetical protein LMED105_03075 [Limnobacter sp. MED105] gi|149825285|gb|EDM84496.1| hypothetical protein LMED105_03075 [Limnobacter sp. MED105] Length = 454 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291 +F+ S+ I +++K+ LA I++ G+TD P R+I NW+LS +R Sbjct: 344 GDGLFNSGSAELNDSAIPLVEKVARKLALHPGQITVTGYTDNQPIRSIRFPSNWQLSAER 403 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 A Q + + G +D + NRR++I++ Q Sbjct: 404 AEHVGQRIAT--FLPNTAIATEGAGAANPIAPNDSAQGRARNRRVEIMLTHNQ 454 >gi|313206839|ref|YP_004046016.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868] gi|312446155|gb|ADQ82510.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868] gi|315023913|gb|EFT36915.1| putative flagellar motor protein MotB [Riemerella anatipestifer RA-YM] Length = 278 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + R L +S+ L + + + V + + ++IS+ D+ ++ L Sbjct: 106 ISTNARNDSLNLALSNKLKRSLDNVADQDVQVKVLKGVVMISLSDKM---LYRSGDYNIL 162 Query: 246 PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302 P VL K+ +V+ + I G+TD P + + +DNW LS RA S +VL Sbjct: 163 PAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQNQ 222 Query: 303 -GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 GV RI+ G + + K + + NRR +I++ + Sbjct: 223 FGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIIIMPK 263 >gi|239905381|ref|YP_002952120.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239795245|dbj|BAH74234.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 234 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 10/186 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV--ADNIV 212 +D + + ++ F+ P + + K + L +I+ + L+ N+ Sbjct: 36 QDKNVPSKEKTQNLEKVPTFISPDAIKGSPEFKLSQE-NKLKYEIAILIKELITSDQNVK 94 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 +G+L+ + N+ MF S+ P ++ + ++L +++RGH Sbjct: 95 NNSGVSNDSSGVLMQV---NNSVMFKPGSAEITPAAAKIMDGVAKILRDFKINLTVRGHA 151 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIA--SDPMNS 329 D W LS RA +A + L K+G+ R+ + G A + + S S Sbjct: 152 DDDEGSGPYPSKWELSAARAAAAVRYLSEKAGIPSTRLRAV-GLADSQPLVPPTSAENKS 210 Query: 330 ANRRID 335 NRRI+ Sbjct: 211 RNRRIE 216 Score = 49.5 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94 + YADF+T +MAFFL++W++ + TK+ + F ++ + + Sbjct: 1 MAYADFVTAMMAFFLLLWLVVSLKPQTKQELSLVFQDKNVPSKEKTQNLEKVPTFISPDA 60 Query: 95 QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154 K ++ I Q ++NN ++S N+ Sbjct: 61 IKGSPEFKLSQENKLKYEIAILIKELITSDQNVKNNSGVSNDSSGVLMQVNNSVMFKPGS 120 Query: 155 KDLCKST 161 ++ + Sbjct: 121 AEITPAA 127 >gi|300715167|ref|YP_003739970.1| OmpA family protein [Erwinia billingiae Eb661] gi|299061003|emb|CAX58110.1| OmpA family protein [Erwinia billingiae Eb661] Length = 412 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +S+ VL +I + + + I + G++D P R+ N+ Sbjct: 281 SVVTLKGDGLFTSASTSVRGRYEEVLDRIAQAMNNVNGRILVIGYSDNVPIRSARFASNY 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LSL RA S + L + R+ G + + + NRR+DI + Sbjct: 341 ELSLARAQSVQERLQQHLSQPQRVKA-EGRGESNPLVPNTTAENRARNRRVDITLL 395 >gi|254440394|ref|ZP_05053888.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198255840|gb|EDY80154.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 315 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 9/236 (3%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 + ++D+ + + ++ ++ + + + + + L + I Sbjct: 83 RVAIDMNAENASPQELIEKFQRVGQAVEIAGLATGKAEQEVLFGGLDQTLNDLITMVSEI 142 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 ++E E A+ + R + A++ L + I +G++ R G I Sbjct: 143 QRQEQESGGATLDE---ALNQMARAIEKAREAEEQLRANLQSEIEQGLVTVEQRDG--IV 197 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNW 285 + F S+ + ++++++G V + + + GHTD P + RDNW Sbjct: 198 FVSLGAGGAFPSGSADLTQQASIIIEELGAVTSDPASRVIVSGHTDNVPISFGALYRDNW 257 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 L+ RA S Q + + + R F + + NRRI+I +E Sbjct: 258 DLAAARAASVVQAIEATNPVQGRTMSAVSFGQTQPIADNFTAEGREQNRRIEIEIE 313 >gi|325335721|gb|ADZ11995.1| Flagellar motor protein [Riemerella anatipestifer RA-GD] Length = 281 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + R L +S+ L + + + V + + ++IS+ D+ ++ L Sbjct: 109 ISTNARNDSLNLALSNKLKRSLDNVADQDVQVKVLKGVVMISLSDKM---LYRSGDYNIL 165 Query: 246 PETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS 302 P VL K+ +V+ + I G+TD P + + +DNW LS RA S +VL Sbjct: 166 PAAQEVLGKVAKVINDYDKYSVLIEGNTDNVPLNSASLPKDNWDLSALRATSVAKVLQNQ 225 Query: 303 -GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 GV RI+ G + + K + + NRR +I++ + Sbjct: 226 FGVDPSRITA-GGRSEYNPKATNMSVSGRAENRRTEIIIMPK 266 >gi|115379068|ref|ZP_01466194.1| hypothetical protein STIAU_2752 [Stigmatella aurantiaca DW4/3-1] gi|115363928|gb|EAU63037.1| hypothetical protein STIAU_2752 [Stigmatella aurantiaca DW4/3-1] Length = 831 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 22/280 (7%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F TA E P D DE + + + G + Q + Sbjct: 558 FRILAGVNWTAKPRAKPEPAPVCPLGPEDKDGFEDEDGCADPDNDQDGFPDVSDQCPNVP 617 Query: 129 NNIFYLSN-----SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + + + + ++ + + E+ P ++ I Sbjct: 618 ETVNGFEDGDGCPDEVPAPVDSDGDGLTDDKDRCPNQPEDKDGFEDEDGCPDPDNDQDGI 677 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L K + G G I I+ F + I Sbjct: 678 LDGSDKCPNEPEVINGREDEDGCPDQG-----EVNVRVEGKKILIL---QKVYFATNKDI 729 Query: 244 PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-M 300 L + +L+++ VL + + I + GHTD+ N LS RA S L Sbjct: 730 ILDRSFSLLKQVAAVLRANPQLTKIRVEGHTDSQ---GSDAFNLDLSDRRAKSVRTYLIE 786 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 K G++ DR+ + G+ + +D + NRR++ ++ Sbjct: 787 KEGIAADRLEAV-GYGETKPVDTNDTVAGRENNRRVEFII 825 >gi|162450713|ref|YP_001613080.1| ompA family outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161161295|emb|CAN92600.1| omp A family outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 578 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 104/273 (38%), Gaps = 25/273 (9%) Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 G L+ S GI D I D + + + + Q ++ Sbjct: 322 GVALVGGSFGIADSDAR-SPGFNYVITAEKDTDGDGYPDVIDLCPEDPEDGKQPKPSDGC 380 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + + + + + + +D D + ++ + P +++K + + Sbjct: 381 PDMPDRDGDGIPDVVDKCPDDPEDKDGIDDRDGCPEEDADQDGIPDAEDKCPKEPGQVVV 440 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +D N + T + I I+ Q F+ SS LP++ +L Sbjct: 441 ED------------PEKNGCPFYIRRITGSA-EIEIMKQVE---FEFDSSRILPQSYPIL 484 Query: 253 QKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++ +L + E+ +SI GHTD I ++ RL+ +RA + L+ GV +R++ Sbjct: 485 DEVVRLLKANPEIKLLSIEGHTDNQ--GTIDYND-RLAHNRAIAVRVYLINKGVQSERLT 541 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 I G+ R +++D NRR++ ++ + Sbjct: 542 SI-GYGSRRPLLSNDTPEGRQRNRRVEFHIKSQ 573 >gi|315635427|ref|ZP_07890693.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315480185|gb|EFU70852.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 316 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I++ + + ++K + +LI+ I + F++ SSIP ++ +++I ++ Sbjct: 176 INNQQNENSNEEVIKNETLKLPEIQLLINNILKDKKISFERKSSIPTEQSQNTIKEIAKI 235 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + GHTD+ R A N ++S DRA S +L+ SGV+E RI I G+ Sbjct: 236 LNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSVKNILVNSGVNETRIKAI-GYGE 291 Query: 318 HRLKIASDPM--NSANRRIDILV 338 D + NRR++ ++ Sbjct: 292 EFPIAKDDENGLSEINRRVEFII 314 >gi|254787924|ref|YP_003075353.1| OmpA/MotB domain-containing protein [Teredinibacter turnerae T7901] gi|237683974|gb|ACR11238.1| OmpA/MotB domain protein [Teredinibacter turnerae T7901] Length = 304 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 99/244 (40%), Gaps = 13/244 (5%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 + I + G+ + + ++Q+ + + ++H ++ D + Sbjct: 59 EAGKSIARLETLENDGADDYELEHQQYLAERKLDTAIELAKHNRSQEYIDDADVRRKDLM 118 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + + + A +R + A + S + + ++ V + Sbjct: 119 LQARERDLTQAEREAAFMKSRAEAAEQRAEMAVARANSMEEKASQMASK--LESVTTKLD 176 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 + G++I++ D +F S P + L+K+ ++LA + I + G TD++ Sbjct: 177 KRGLVITMGD----ILFATDESEVKPGAVRTLEKVSDLLAEYPDREILVEGFTDST---G 229 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 A N LS RA + + L+ +G++EDR+S G+ ++D NRR++++ Sbjct: 230 AADYNKNLSERRAEAVVKQLVDNGLAEDRLSA-KGYGEEYPVASNDTAAGRQQNRRVELV 288 Query: 338 VEDR 341 V ++ Sbjct: 289 VANK 292 >gi|330810957|ref|YP_004355419.1| lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379065|gb|AEA70415.1| putative lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 269 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 + +N+E L + LA++ K L + G + + + T Sbjct: 95 SNQVLNEERAAKLELERQRLQLALRESKLLSVQQQ-------GKWLEEQIMAMATTQTDR 147 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G+++++ D +FD + V+ KI + L + + + I G+TD++ Sbjct: 148 GLVMTLGD----VLFDTGEAELKNSANRVVLKIVQFLQLNPKRVVRIEGYTDST---GGK 200 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVE 339 ++N +LS DRA + VL+ GV E RI ++ G+ AS+ + NRR++I+ Sbjct: 201 QENLKLSRDRAQAVADVLVDLGVDEKRI-QVEGYGDQYPVDVNASERGRAQNRRVEIVFS 259 Query: 340 DRQG 343 D +G Sbjct: 260 DEKG 263 >gi|323343250|ref|ZP_08083477.1| OmpA family protein [Prevotella oralis ATCC 33269] gi|323095069|gb|EFZ37643.1| OmpA family protein [Prevotella oralis ATCC 33269] Length = 287 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ S L KI ++ Sbjct: 130 LTNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAQTTLSKIAKI 186 Query: 259 LAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + I G+TD P R+NW LS RA S Q L GV R++ G Sbjct: 187 IMDYKDYDVLIEGNTDNVPISRENIRNNWDLSCLRASSVVQYLQNHYGVDPKRLTA-GGR 245 Query: 316 AHHRLKIASDPM--NSANRRIDILVEDR 341 + ++ NRR I++ + Sbjct: 246 GEYNPIASNGTEVGRQRNRRTQIIITPK 273 >gi|325982116|ref|YP_004294518.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325531635|gb|ADZ26356.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 237 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 7/155 (4%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVV 251 L +K+ T+S + +T +I I+ + F I + V Sbjct: 82 LTEKVEKTISQDENPPAATEEIIDTVPPLDVIDRPRILAIFDGKTFRSGQDIIHDVSHSV 141 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + + + ++ S I I GHTD P I+ DN LS RA + VL+ GV RI Sbjct: 142 IDNLIKEISASPNSRILIEGHTDNIPTGKISSDNMDLSRRRARAIANVLILHGVPATRI- 200 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 I G+ R +++ D + NRR+++ + +G Sbjct: 201 SIIGYGDKRPIVSNATDEGRAKNRRVEVKLMPPEG 235 >gi|254467608|ref|ZP_05081017.1| OmpA family protein [Rhodobacterales bacterium Y4I] gi|206684356|gb|EDZ44840.1| OmpA family protein [Rhodobacterales bacterium Y4I] Length = 474 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 ++ K++ L + + IV+ T ++I + + MF S + Sbjct: 327 EEQVAKVAGFLEPEIKEGIVQVFQKGNT---LIIRLT---GSGMFGSGSDQLSKAFRNPV 380 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 ++ E L I + GH+D P R+ N LSL RA S + DR+S Sbjct: 381 NRVAEALNDEKGKIIVAGHSDNVPIRSSRFPSNMALSLARAKSVMAGMANVMTDPDRLSA 440 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQG 343 G A + + NRRI+I LV++ QG Sbjct: 441 -EGRADKEPIADNSTRDGRAKNRRIEILLVQEVQG 474 >gi|312962530|ref|ZP_07777021.1| OmpA/MotB [Pseudomonas fluorescens WH6] gi|311283457|gb|EFQ62047.1| OmpA/MotB [Pseudomonas fluorescens WH6] Length = 271 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 11/181 (6%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + E + + L +R + +K IS G + + + T G++ Sbjct: 93 AREHTEQALNEERAAKLELERQRLQLALRESKLISVQQQGKWLEEQIASLTTTQTDRGLV 152 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDN 284 +++ D +FD + + KI + L + + + I G+ D + ++N Sbjct: 153 MTLGD----VLFDTGEAELKNSANRTVLKIVQFLQLNPKRVVRIEGYADNT---GGQQEN 205 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 +LS DRA S VL+ G+ E RI ++ G+ AS+ + NRR++I+ D + Sbjct: 206 LKLSRDRAQSVADVLVDLGIDEKRI-QVEGYGDQYPVEANASERGRAQNRRVEIVFSDEK 264 Query: 343 G 343 G Sbjct: 265 G 265 >gi|319786952|ref|YP_004146427.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465464|gb|ADV27196.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 216 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 16/169 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + + + + R + K L +A + G + I I R + Sbjct: 39 GVQLQLSARLDEEVRQRQAEAKQRHALEQALAVPLADGRVTLVDG---RIGI---RGNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE VL+ + LA +V+ + G TD P R DNW LS Sbjct: 93 FALNSDQLQPEGRQVLRSLAAPLARYLEAGEQVLMVSGFTDDRPVHEGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 RA + + L++ GV D + + F + +D + NRR++I Sbjct: 153 QRALTVTRALIEEGVPADSVFAAA-FGAQQPVSPNDDEEGRARNRRVEI 200 >gi|326334458|ref|ZP_08200670.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693425|gb|EGD35352.1| OmpA family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 455 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T +FD + ++ VL +I VL I GHTD++ N LS +R Sbjct: 349 KTILFDTGKATIKFQSADVLNQIISVLNKFPNSRFRIEGHTDST---GKKAKNQVLSQNR 405 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A + L++ G+ +R+ + G+ + ++ NRR++I Sbjct: 406 ADAVKVYLIQGGIDANRLESV-GYGQDKPIASNKTKKGRELNRRVEI 451 >gi|115376920|ref|ZP_01464141.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|310825376|ref|YP_003957734.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|115366099|gb|EAU65113.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|309398448|gb|ADO75907.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 374 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 102/287 (35%), Gaps = 14/287 (4%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + A++ + Q R SQ ++D + + + + + Sbjct: 88 KAQLAEAQASIAVAQHQRAVAAQALRQTQEAQRRQSQAQLDAAQRQLLEARRLRDEAAQL 147 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 + ++ Q + Q+++ + + R +++ + ++ + + + E Sbjct: 148 AEARRLQSQTVQL-----QQEAQRRQEEMDRLAQEQRQRSEAETQAQRLAQAEQALEVER 202 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + + A+ + + L + G ++++ + +F Sbjct: 203 RARAEAETRAAEEREARARAEAQAATALAGLARQGELKVSEDARGTVLTLS---GSVLFA 259 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 LP L ++ E L + ++I GHTDA R N LS RA Sbjct: 260 SGEDDLLPSARSKLSEVAEALKPTHNRLTIEGHTDAQ---GADRFNEDLSFRRAERVRNF 316 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L+ GV+ +R+ + G +R ++ + NRR++I+++ Sbjct: 317 LVSQGVAANRVE-VRGLGEYRPVASNSTAEGRANNRRVEIILQRGDA 362 >gi|186470892|ref|YP_001862210.1| DotU family type IV/VI secretion system protein [Burkholderia phymatum STM815] gi|184197201|gb|ACC75164.1| type IV / VI secretion system protein, DotU family [Burkholderia phymatum STM815] Length = 410 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAY 293 +F+ S P ++ IG+ +A + + + GHTD+ PF ++ R N LS RA Sbjct: 303 GIFEAGQSSVNPWVKPLITTIGQEVAKTPGRVLVTGHTDSQPFSHMQRSSNLALSDARAQ 362 Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 Q+L+ +GV+ DRI G A A+ NRR++I V Sbjct: 363 EVAQILVSAGVATDRIDSTGKGNAEPAADNATPQGRLRNRRVEITV 408 >gi|91783726|ref|YP_558932.1| hypothetical protein Bxe_A2088 [Burkholderia xenovorans LB400] gi|91687680|gb|ABE30880.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 443 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQRNTPMFDKSS 241 + + +K++ D+ + L ++K + + S + R MF + Sbjct: 283 SAEVRKQIADIGRMTPPVTRALHLKELLKNEIAAGTVSVDEDAHHSSVTFRGDSMFPPGA 342 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300 + ++ KI +A +++ G+TD P ++ N LS +RA Q+L Sbjct: 343 AAVKTSMTPLITKIAGEIAKVPGKVTVLGYTDNVPIKSRQFASNAALSEERATQIMQMLQ 402 Query: 301 KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 +GV R+ + G A + + NRR++I V Sbjct: 403 TAGVPAVRLEAVGRGDADPIGDNTTVQGRAQNRRVEITV 441 >gi|261879154|ref|ZP_06005581.1| OmpA family protein [Prevotella bergensis DSM 17361] gi|270334253|gb|EFA45039.1| OmpA family protein [Prevotella bergensis DSM 17361] Length = 284 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 15/244 (6%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 +N + K+ Q S+ ++ + + K L ++D +I Sbjct: 30 QNENRELTSNYQSAKEQLAASQARVSSLEDQLSQQKRDYASLQNSLDKSLANTSDNNINI 89 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 +K + + L + K L +++ L+ ++ +K V + + + IS Sbjct: 90 SKLVDQINESNQYIRHLVDVKSKS-DSLNMVLTNNLTRSLSREEMKEVDVQVLKGVVYIS 148 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA----- 281 + D ++ S L KI +++ + I G+TD P + Sbjct: 149 LADNM---LYKSGSYEINDRAEETLGKIAKIIMDYKDYDVLIEGNTDNVPINTSSELMKN 205 Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 R+NW LS RA S Q L+ GV+ R++ G ++D NRR I+ Sbjct: 206 IRNNWDLSALRASSVVQYLIDHFGVAPGRLTA-GGRGEFNPIASNDTALGKQRNRRTQII 264 Query: 338 VEDR 341 + + Sbjct: 265 ITPK 268 >gi|332877182|ref|ZP_08444932.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684925|gb|EGJ57772.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 284 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 16/254 (6%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 ++ ++ + K+ + Q + + + S ++ + + L Sbjct: 15 VTKKQYAQLQTDYNKLDKSYQDTKMKLVACGTKSKSLEERLAEAQKANEELKASYAALQG 74 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIV 212 S D N + N + L E + K K+L + K +++ L+ ++ + Sbjct: 75 SLDKSIQQNSQGNVNISKLVDEINASNKFIKQLVEAKDKSDSLNMVLTNNLTRSLSREEM 134 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGH 271 K V + + + IS+ D ++ S L KI +++ + I G+ Sbjct: 135 KDVDIQVLKGVVYISLADNM---LYKSGSYEISERAGETLSKIAKIIMDYKEYEVLIEGN 191 Query: 272 TDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNS 329 TD P R+NW LS RA S Q L GV R++ +G + ++D Sbjct: 192 TDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLTA-AGRGEYNPVASNDTPEG 250 Query: 330 --ANRRIDILVEDR 341 NRR I++ + Sbjct: 251 KMRNRRTQIIITPK 264 >gi|332702327|ref|ZP_08422415.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552476|gb|EGJ49520.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 282 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 23/190 (12%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + E +L + K + ++DL L L+ ++ + F + L Sbjct: 57 GASPETENYLARHDERKTREIGPMNDIKDL-----ELLKPLLYEDARDDIRFAENK---L 108 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT------------D 273 I I+ + +F+ + ++ ++ VL + + GHT D Sbjct: 109 IQIMSISSDILFEPGQTKLSERGRDLVGRMAPVLRELPQPFLLAGHTSTLRDELKTEYLD 168 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 P WR+SL RA + Y+ L+ GV +R+ ++ FA +R + ++ N Sbjct: 169 YKPKDGEPNPGWRISLGRAMAMYRELLVHGVPVERM-RVEAFADYRPRFGNETAAERRMN 227 Query: 332 RRIDILVEDR 341 RR+DI+++ R Sbjct: 228 RRVDIVLDKR 237 >gi|153006367|ref|YP_001380692.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029940|gb|ABS27708.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 307 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 17/218 (7%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 Q + + + + D ++ + L E+ + K L ++ Sbjct: 51 QLREARGEAASATRGLHEARAALDDARTQRADLATRLGQAEVERRDLLAVKDELSQDVQQ 110 Query: 199 ISSTLSGLVA--DNIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIV 250 ++ L D + + + E + + +S +D + +FD S + Sbjct: 111 KEQEIAALRGEFDELQEKMKAEIEKGNVRLSQEKGRIKVDMVDEILFDVGDSSISAQGAE 170 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLSLDRAYSAYQVL-MKSGV 304 VL ++G VLA ++ I + GHTD P NW LS RA + + L ++GV Sbjct: 171 VLSRVGAVLARMSDKHIQVSGHTDDLPISKRLVERFPTNWELSAARAITVVRFLEERAGV 230 Query: 305 SEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340 R+ + + + + + NRRI+IL+ Sbjct: 231 PGRRLVGAA-HSQYDPISTGKTAKERARNRRIEILLTP 267 >gi|312131420|ref|YP_003998760.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311907966|gb|ADQ18407.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 532 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 99/249 (39%), Gaps = 15/249 (6%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGK 155 DL+ + + + + +K++ Q + + + + ++ + E + Sbjct: 293 DLTQESTPNEGVLQATTLAEERKEEEQPIVPTKVAIISGKVTDLTTGKPIEVRIIYEDME 352 Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D + E + P K + + L ++K I T+ G + + + Sbjct: 353 DGEELGVATSDPITGEYKIVLPYGKRYSIRPESDNLLG-VSKSIDLTIPGQYKEITGQDL 411 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + G I++ N F+ + + E+ + L ++ +L + + I ++GHTD Sbjct: 412 ETAPIKAGTAITL----NNVFFEFAKATLEKESFLELDRLIALLVKNPNMAIEVQGHTDN 467 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 N RLS RA + ++ G++ DRI+ +GF R +++ + NR Sbjct: 468 V---GSDNANMRLSQQRADAVKAYFVEKGIATDRITS-TGFGESRPVASNETTEGQAKNR 523 Query: 333 RIDILVEDR 341 R++ ++ + Sbjct: 524 RVEFVILRK 532 >gi|281426147|ref|ZP_06257060.1| OmpA family protein [Prevotella oris F0302] gi|299141901|ref|ZP_07035036.1| OmpA family protein [Prevotella oris C735] gi|281399723|gb|EFB30554.1| OmpA family protein [Prevotella oris F0302] gi|298576752|gb|EFI48623.1| OmpA family protein [Prevotella oris C735] Length = 284 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ S L+KI ++ Sbjct: 120 LTNNLTRSLSREEMKEVDIKVLKGVVYISLADNM---LYKSGSYEINDRAEETLRKIAKI 176 Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + I G+TD P + R+NW LS RA S Q L GV+ R++ Sbjct: 177 IMDYKDYDVLIEGNTDNVPVNTKSAAMKNIRNNWDLSALRASSVVQYLQDRFGVAPKRLT 236 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 G + ++D NRR I++ + Sbjct: 237 A-GGRGEYNPVASNDTELGKQRNRRTQIIITPK 268 >gi|85704503|ref|ZP_01035605.1| hypothetical protein ROS217_05474 [Roseovarius sp. 217] gi|85670911|gb|EAQ25770.1| hypothetical protein ROS217_05474 [Roseovarius sp. 217] Length = 461 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 6/144 (4%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + G + I +G+ E + I+ + + MF S P L ++ L Sbjct: 319 ERVKGFLEAEIREGI-VEVFQDQSTIT-VRLTGSGMFGSGSDQLQPAFDTPLSRVANALN 376 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH+D P ++ N LSL RA S + L + + K G A Sbjct: 377 DAEGPIIIVGHSDNVPIKSSRFPTNMHLSLARAESVMRTLSTQ-IDDKARLKAEGHADKD 435 Query: 320 LKIASDP--MNSANRRIDILVEDR 341 + + NRRI++++ + Sbjct: 436 PIADNGTSEGRAKNRRIEVVLIRK 459 >gi|312130013|ref|YP_003997353.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311906559|gb|ADQ17000.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 622 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + + FD S+ PE+ + L+K+ +L + + + I GHTD + N LS Sbjct: 514 ETLDNIFFDTGSAAIRPESEIELKKVVTLLKENPDLKVEISGHTDDV---GNDKANMNLS 570 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + RA + + L G+ R+ G+ + K+ +D NRRI++ V Sbjct: 571 IQRANAVVEYLKGKGIHTQRLVA-KGYGESQPKVKNDSDKNRQLNRRIELKVL 622 >gi|330899174|gb|EGH30593.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 271 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASTDFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 +DN +LS DRA + VLM GV E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQDNLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|114769425|ref|ZP_01447051.1| flagellar motor protein [alpha proteobacterium HTCC2255] gi|114550342|gb|EAU53223.1| flagellar motor protein [alpha proteobacterium HTCC2255] Length = 638 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 106/321 (33%), Gaps = 24/321 (7%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 K+ AD T L L + +DT + + +K + + Sbjct: 319 KLKNAD--TELTVMSLALEAERKEAEDTLTKLAAANAIEKSLTIDLNKSFTEVERQAALI 376 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD--- 150 +Q I L+ ++ ++ ++ Q Q + N + L + + K + Sbjct: 377 AQANILLNQEKTLSSSAQRKLALLNTQTSQLRDQLNQLQGLLDESKEADSKAQIQLKMLG 436 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + L + ++ + E+ K K K RL D AK + S Sbjct: 437 TNLNLALARVASEQRKLAAEQEKVAAEQRKIAEFESKEKLRLADEAKDLKKFRSEF---- 492 Query: 211 IVKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-- 266 K + G+ I + +F S+ + K+ +++ + I Sbjct: 493 FGKLREVMEGKEGVRIVGDRFVFSSEVLFSVGSAYLGSRGKTEISKVADIINQIADEIPT 552 Query: 267 ------SIRGHTDASPFR---NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + GHTD PF N +DNW LS RA S + LM +GF Sbjct: 553 GIDWILRVDGHTDRIPFSGFGNDYKDNWELSQARALSVVRYLMDDLDIPANRLAANGFGE 612 Query: 318 HRLKIASDPMNS--ANRRIDI 336 + D + NRRI++ Sbjct: 613 FQPIDNRDTPEAYKTNRRIEL 633 >gi|330980720|gb|EGH78823.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 271 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 +DN +LS DRA + VLM GV E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQDNLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|222106979|ref|YP_002547770.1| OmpA-type porin [Agrobacterium vitis S4] gi|221738158|gb|ACM39054.1| OmpA-type porin [Agrobacterium vitis S4] Length = 511 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 8/146 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + ++ L + K V + + I N+ +FD S+ + +LQ+IG Sbjct: 331 RLKNLITFLQPEVEKKLVSLSDANGRLRVRI---NNSGLFDTGSADVKGQFRDLLQRIGG 387 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 LA + G+TD P + + NW LS RA + ++L + ++ G A Sbjct: 388 ALAAEKFRAVVIGYTDNVPIKTVQFPSNWHLSEARAKAVGEILSSFTGPDAILT--EGRA 445 Query: 317 HHRLKIASDPMNSA--NRRIDILVED 340 +D NRR +ILV Sbjct: 446 DSDPIAGNDTPEGREMNRRTEILVLT 471 >gi|146278244|ref|YP_001168403.1| hypothetical protein Rsph17025_2208 [Rhodobacter sphaeroides ATCC 17025] gi|145556485|gb|ABP71098.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 525 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 81/205 (39%), Gaps = 16/205 (7%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 + ++ +S+ + N L ++ E+ + ++ + + + L ++ Sbjct: 322 AAQERDEENRVQLQSLGTQLNSALAQVAAEQKRRAELEEAERLRLEARNKDLERFRSEFF 381 Query: 212 VKGVLFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS------- 262 + R G+ I + +F+ S+ E + + L+ Sbjct: 382 GQLRQVLAGREGVRIVGDRFVFSSEVLFEPGSAQLASEGRTQISGVTRTLSEIREQIPEG 441 Query: 263 -TEVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 +I + GHTD P RDNW LS RA S + + ++ G R++ +GF + Sbjct: 442 IDWIIRVDGHTDDVPLSGFGAFRDNWELSSARALSVVRYMQQTLGFPPSRLAA-TGFGEY 500 Query: 319 RLKI--ASDPMNSANRRIDILVEDR 341 R + +S + NRRI++ + +R Sbjct: 501 RPVVEGSSPEARAQNRRIELKLTER 525 >gi|288800219|ref|ZP_06405677.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332432|gb|EFC70912.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 283 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +S+ L+ ++ +K V + + + IS+ D ++ S L KI ++ Sbjct: 123 LSNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 179 Query: 259 LAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + I G+TD P R+NW LS RA S Q L GV+ R++ G Sbjct: 180 ITDYKDYDVLIEGNTDNVPIARENIRNNWDLSCLRASSVVQYLQTHYGVNPKRLTA-GGR 238 Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341 + ++ NRR I++ + Sbjct: 239 GEYNPIANNNTELGKQRNRRTQIIITPK 266 >gi|119357472|ref|YP_912116.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354821|gb|ABL65692.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266] Length = 229 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 15/143 (10%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D V+G E GI + + D +F+ SS + ++K+ +LA + + Sbjct: 87 DRNVEGAEVERIGEGIRV-VFDS--GILFNTGSSAITSTSRYNIEKLAGILAKYDDTNLI 143 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ N LS +RA S +L GVS R+S I G+ R +++ Sbjct: 144 IEGHTDSV---GSDSMNQTLSENRAQSVANLLKAYGVSSSRLSAI-GYGESRPIASNETE 199 Query: 328 NSA--NRRIDILV-----EDRQG 343 + NRR+++L+ RQ Sbjct: 200 SGRRLNRRVEVLITANNELKRQA 222 >gi|229592075|ref|YP_002874194.1| hypothetical protein PFLU4673 [Pseudomonas fluorescens SBW25] gi|229363941|emb|CAY51462.1| putative outer membrane protein [Pseudomonas fluorescens SBW25] Length = 271 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E+++N+E L + LA++ +K IS G + + + T Sbjct: 97 TEQALNEERGAKLELERQRLQLALRE-------SKLISVQQQGKWLEEQIASLATTQTDR 149 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G+++++ D +FD + + KI + L + + + I G+ D + Sbjct: 150 GLVMTLGD----VLFDTGEAELKNSANRTVLKIVQFLQLNPKRVVRIEGYADNT---GGE 202 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 R+N +LS DRA S VL+ G+ E RI ++ G+ AS+ + NRR++I+ Sbjct: 203 RENLKLSRDRAQSVADVLVDLGIDEKRI-QVEGYGDQYPVEANASERGRAQNRRVEIVFS 261 Query: 340 DRQG 343 D +G Sbjct: 262 DAKG 265 >gi|241663267|ref|YP_002981627.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12D] gi|240865294|gb|ACS62955.1| OmpA/MotB domain protein [Ralstonia pickettii 12D] Length = 431 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 11/264 (4%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 I P+R + + + +V G + + Q Sbjct: 163 IPSAATTPQRRHVTIANSAAEHQRIHVAVSNPSGGAVEPSDVLITVGMPVQEAAPSQELS 222 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + S L ++ S+ L + KR + L +I+ Sbjct: 223 PQRSWRLIVIAVVVTALVIGLAWVTYRQHLDNQALASQVSALEAQVAKRQEPLEDRIARA 282 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L+ + F + G I I+ F S+ P L+++ VL + Sbjct: 283 LTSETGAS-----QFGLSTEGDRIYIVFSSGMG-FAAGSADITPMLARQLERLAGVL-TT 335 Query: 263 TEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++I GHTD SP R N LS RA + + L G+SE R+ G Sbjct: 336 DGKVTIVGHTDDSPGARGRTETNLALSAARAMAVGRNLQAHGLSETRL-STMGRGAKEPV 394 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 + + NRR++I+++ ++ Sbjct: 395 GDNKTAEGRALNRRVEIVLDRQRA 418 >gi|262197216|ref|YP_003268425.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262080563|gb|ACY16532.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 374 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 96/274 (35%), Gaps = 20/274 (7%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + GIFD+++ + + ++K DE + + + G + + Sbjct: 118 PEVVAVDSDGDGIFDDRDACKGAPEDKDGFE-DEDGCPDLDNDQDGIVDASDACPLEPED 176 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 L + ++ + + E+ P + + Sbjct: 177 KDGLDDEDGCPEEDRDGDMIADNKDQCPDEPEDKDGFADEDG--CPDCDNDGDGVPECPV 234 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + K + T G N+VK T I I + T F+ + P + Sbjct: 235 VVDQCPSKAAKTPDGCPVYNLVK-----VTSKKIEI-----KQTIYFETGKNTIKPVSFA 284 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L ++ VL + E + I GHTD+ R A N LS RA S L+ GV DR+ Sbjct: 285 LLNEVATVLTDNPEIEVRIEGHTDS---RGSAEFNMELSQSRAESVRSFLIDKGVDGDRL 341 Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 G+ ++ + NRR++ ++ R Sbjct: 342 EA-KGYGESAPIANNNTRAGQAQNRRVEFVIVSR 374 >gi|221201698|ref|ZP_03574736.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221207227|ref|ZP_03580237.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221172815|gb|EEE05252.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221178514|gb|EEE10923.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 310 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 94/289 (32%), Gaps = 22/289 (7%) Query: 64 AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 N G + G P + + + + + Sbjct: 22 GAAYAQNAGGATVTPVGNGTVAASALPANAGAGSASAAASGTLVRGTAGTLAPPPANATP 81 Query: 124 YQRLENNIFYLSNSQQS------EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 Q + ++ + + + D + D+ + ++ K L Sbjct: 82 GQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQIEVGDVATPPNWSANVQKLLGAQLKQ 141 Query: 178 LSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISII 229 +SK ++ + + + ++I+S ++ + I G+ + G+L + Sbjct: 142 ISKGQLKINGTQIEMKGEVHNEAQRQQIASDMANTLNPTYTIRNGLRVSASEQGLLDQTL 201 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 R F+ S+ P+ +L ++ LA + I GHTD N LS Sbjct: 202 ANRTIE-FETGSATLTPQGKQILDQMAAALAKLQNRTVDIIGHTDN---SGNRTSNIALS 257 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 RA + L+ G+S +++ +G + +D + NRRI+ Sbjct: 258 QARADAVKGYLITKGISPQQMT-TTGVGPDQPIAPNDTADGRARNRRIE 305 >gi|282877998|ref|ZP_06286806.1| OmpA family protein [Prevotella buccalis ATCC 35310] gi|281299833|gb|EFA92194.1| OmpA family protein [Prevotella buccalis ATCC 35310] Length = 288 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ S L KI ++ Sbjct: 121 LTNNLTRSLSREELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 177 Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + + G+TD P + R+NW LS RA S Q L GV R++ Sbjct: 178 IMDYKDYDVLVEGNTDNVPVNQNSPLMKNIRNNWDLSTLRASSVVQFLQSHYGVDPKRMT 237 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 G + +++ NRR I++ + Sbjct: 238 A-GGRGEYNPLTSNNTELGKQRNRRTQIIITPK 269 >gi|118589219|ref|ZP_01546625.1| hypothetical protein SIAM614_06738 [Stappia aggregata IAM 12614] gi|118437919|gb|EAV44554.1| hypothetical protein SIAM614_06738 [Stappia aggregata IAM 12614] Length = 360 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 95/268 (35%), Gaps = 15/268 (5%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKN-----SVDLKIGSTNQKKQYQRLENNIFYLSN- 136 F+ PE +ID S + +D K+ K +Q + ++ Sbjct: 98 FFETFEFPEAVITTQIDASALADLPTVKRKIIPLDFKLDLHGVSKSFQSDVAVTYLSADL 157 Query: 137 -SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 + S + D G + K + + + A + D Sbjct: 158 VAVSSTAPVSVAASDFNLGGGIKKLEEAAGVVIVPSATVSFDFVFARKAAEPAQSVSTDA 217 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A K++++ S +G L TG I+ + + F SS P + +L + Sbjct: 218 APKVTASQSAASTALEPEGNLDSEACTG-RFEILSRTDNIYFPSGSSQLDPRSEPLLNSL 276 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +++ VI + GHTD+ N LS RA + Q L+ + E RI + G Sbjct: 277 VDIILRCPGLVIEVGGHTDSD---GSDTSNQLLSERRAGAVKQYLVSKSIPESRIKSV-G 332 Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340 + R A+ + NRRI+ +V + Sbjct: 333 YGESRPVAANTSADGKRRNRRIEFVVVE 360 >gi|330998481|ref|ZP_08322305.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] gi|329568587|gb|EGG50392.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] Length = 292 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 16/213 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-- 198 + + L S D N + N + L E + K K+L + K Sbjct: 64 AEAQKANDELKASYAALQGSLDKSIQQNSQGNVNISKLVDEINASNKFIKQLVEAKDKSD 123 Query: 199 -----ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +++ L+ ++ +K V + + + IS+ D ++ S L Sbjct: 124 SLNMVLTNNLTRSLSREEMKDVDVQVLKGVVYISLADNM---LYKSGSYEISERAGETLS 180 Query: 254 KIGEVLAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRIS 310 KI +++ + I G+TD P R+NW LS RA S Q L GV R++ Sbjct: 181 KIAKIIMDYKEYEVLIEGNTDTDPISRPNIRNNWDLSTLRASSVVQALQNTYGVDPKRLT 240 Query: 311 KISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 +G + ++D NRR I++ + Sbjct: 241 A-AGRGEYNPVASNDTPEGKMRNRRTQIIITPK 272 >gi|121596298|ref|YP_988194.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42] gi|222112527|ref|YP_002554791.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY] gi|120608378|gb|ABM44118.1| OmpA/MotB domain protein [Acidovorax sp. JS42] gi|221731971|gb|ACM34791.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY] Length = 216 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 9/151 (5%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++ + + A GV T L +D + F + S P +L + Sbjct: 70 SQHMERQKQDMQAATQGTGVTVTQTPDNQL--KLDIPSDISFATNRSDIQPNFRPILDRF 127 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E L ++ + I GHTD++ I LSLDRA S L GV+ +RI + G Sbjct: 128 AEGLRNNPNTEVRIVGHTDSTGSDAINNP---LSLDRAESTRNYLTARGVNGNRIH-VEG 183 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQG 343 ++D + NRR++I V +RQG Sbjct: 184 RGSREPVASNDTSDGRARNRRVEIYVGERQG 214 >gi|158604954|gb|EAT98065.3| OmpA/MotB [Campylobacter concisus 13826] Length = 259 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 19/208 (9%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++ E SL + + + E+ P +K + + Sbjct: 42 DAKKMEAAVGSLAGALSVLEGGARPDSQVEKETDPESRRTPKPKAQKGA----QNEVTST 97 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254 KKI+ L+ A + E + G ++ + +FDK S+ + + L++ Sbjct: 98 VKKINELLTASGAPE----ITMEESEDGFIVRL---PAAMLFDKDSAEISGEDAKLFLKR 150 Query: 255 IGEVLAHSTEVIS--IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 IG ++A + I G+TD + +I ++NW+LS RA S + L+ GV ++R+ Sbjct: 151 IGMIIAKMPNEVKTDIIGYTDNTNPSKDSIYKNNWQLSTARALSVLEELVSDGVPQERLI 210 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDI 336 SG A ++ D + N R++I Sbjct: 211 -TSGRASFDPIASNSTDEGRAKNNRVEI 237 >gi|162450796|ref|YP_001613163.1| hypothetical protein sce2524 [Sorangium cellulosum 'So ce 56'] gi|161161378|emb|CAN92683.1| putative membrane protein [Sorangium cellulosum 'So ce 56'] Length = 561 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 26/257 (10%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P R Q + D D+ + T+ + ++ + + + Sbjct: 307 SPGRRFQAVPPRAADTDKDGLPDDIDLCPTDPEDGKPPNADDGCPALPDRDGDGIPDISD 366 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + ++ +D K D + + + P +K+ + S Sbjct: 367 KCPDQPEDFDKINDADGCPEDDADEDSIPDAKDACPKEPGQP-------------SPEPT 413 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--I 266 N + T + I I+ F S+ LP + +L ++ +L + E+ + Sbjct: 414 KNGCPQFIRRITGS-SEIQIL---KQVQFATGSARILPNSYSILDEVVRLLKVNPEITLV 469 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325 +I GHTD R + N +LS DRA+S L + G+ R++ +GF R ++ Sbjct: 470 AIEGHTDN---RGSDQLNEKLSNDRAHSVRTYLIERGGIDPARLTA-AGFGPKRPIDDNN 525 Query: 326 PMNSA--NRRIDILVED 340 NRR++ + + Sbjct: 526 TEAGRQKNRRVEFHIRE 542 >gi|28869391|ref|NP_792010.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213968194|ref|ZP_03396339.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|301383801|ref|ZP_07232219.1| ompA family protein [Pseudomonas syringae pv. tomato Max13] gi|302060757|ref|ZP_07252298.1| ompA family protein [Pseudomonas syringae pv. tomato K40] gi|302131856|ref|ZP_07257846.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852632|gb|AAO55705.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213927174|gb|EEB60724.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|331018607|gb|EGH98663.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 271 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 100/244 (40%), Gaps = 12/244 (4%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 30 QALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVSHYAYLSSRY 89 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRT 222 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 90 SEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQTDR 149 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 150 GLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---GDR 202 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 DN LS DRA + VLM GV + RI ++ G+ A+ + + NRR++I+ Sbjct: 203 EDNLTLSKDRAQAVADVLMDLGVDDKRI-QVEGYGQQFPVDANASERGRAQNRRVEIVFS 261 Query: 340 DRQG 343 D +G Sbjct: 262 DEKG 265 >gi|310819615|ref|YP_003951973.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309392687|gb|ADO70146.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 593 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 39/271 (14%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + GI D + S + + +R + + Sbjct: 354 SDGDGILDPDDK-CPSVPGVARFQGCPDTDGDGLVDPDDKCPSVPGVERFQGCPDTDGDG 412 Query: 138 QQSEHCK-NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + K S+ E K TD ++ + +N P ++ +L ++ Sbjct: 413 IEDASDKCPSVPGIHELKGCPPKDTDKDQLPDHRDNCPNEPGPAANQGCPVQQPQLVEIQ 472 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + I I D FD + LP + +L ++ Sbjct: 473 RD--------------------------RIEIKD---KVYFDSDKATILPRSNKLLDQVA 503 Query: 257 EVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 ++ E I I GHTD R N LS RA L+ GV R+ G Sbjct: 504 RIIIEHPELEKIWIEGHTDE---RGSQDYNRELSQKRAEEVRDYLVTRGVPIGRLVP-KG 559 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + ++D +ANRR++ L R+G Sbjct: 560 YGRQYPVASNDTVEGRAANRRVEFLTTPREG 590 >gi|153002898|ref|YP_001377223.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026471|gb|ABS24239.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 510 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286 ++ R FD + PE+ +L +I +VLA E + I GH+D+ A N R Sbjct: 397 VELREKVQFDTGKATIKPESAGLLDEIAKVLAEHAEITRVVIEGHSDS---SGGAALNKR 453 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS RA + + L++ G++++R+S GF R ++D ANRR++I + Sbjct: 454 LSQARADAVLKALVERGIAKERLSA-KGFGPSRPIASNDTPEGREANRRVEISI 506 >gi|254469405|ref|ZP_05082810.1| OmpA family protein [Pseudovibrio sp. JE062] gi|211961240|gb|EEA96435.1| OmpA family protein [Pseudovibrio sp. JE062] Length = 473 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 201 STLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 +S +A I +G++ G ++I + + MF + I V+ ++ E L Sbjct: 326 QQISAFLATEIQQGLVVVMNANGNVVIRLT---GSGMFATARDTLTARFIPVVNRVAEAL 382 Query: 260 AHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH 317 I++ G++D P RN R+N LS RA + ++ ++R+ I G A Sbjct: 383 NTRPGRINVVGYSDNIPIRNAQFRNNVALSKARAQTVADLIKVRLTDKNRVRAIGRGSAD 442 Query: 318 HRLKIASDPMNSANRRIDILVEDRQG 343 A+ + NRRIDI + G Sbjct: 443 PIASNATAEGRAQNRRIDITLIPSTG 468 >gi|325473514|gb|EGC76707.1| OmpA family protein [Treponema denticola F0402] Length = 422 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 10/154 (6%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ + + V D ++ E T G+ ISI F +S+I Sbjct: 276 EVKKIDTAAEEEIKKSVEDLNLENTTIEKTDEGLTISI----ENIQFLPNSAILRESEKE 331 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L+KIGE+L + I GHT + +LS +RA + L+ GV + Sbjct: 332 KLKKIGEILLKFPDREFLISGHT---ALAGTEEERQKLSEERAAAVANYLIDLGVQKREH 388 Query: 310 SKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341 GF R A++ P N + NRR++I + D+ Sbjct: 389 VYTRGFGARRPVAANNSPENMAKNRRVEITILDK 422 >gi|157736296|ref|YP_001488979.1| hypothetical protein Abu_0025 [Arcobacter butzleri RM4018] gi|157698150|gb|ABV66310.1| hypothetical protein, OmpA domain [Arcobacter butzleri RM4018] Length = 316 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I++ + + ++K + +LI+ I + F++ SSIP ++ +++I ++ Sbjct: 176 INNQQNENSNEEVIKNETLKLPEIQLLINNILKDRKISFERKSSIPTEQSQNTIKEIAKI 235 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + GHTD+ R A N ++S DRA S +L+ SGV+E RI I G+ Sbjct: 236 LNENPNFKVEVAGHTDS---RGEAALNKQISQDRANSVKNILVNSGVNETRIKAI-GYGE 291 Query: 318 HRLKIASDPM--NSANRRIDILV 338 D + NRR++ ++ Sbjct: 292 EFPIAKDDENGLSEINRRVEFII 314 >gi|257485486|ref|ZP_05639527.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010666|gb|EGH90722.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 271 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGRAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VLM GV E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|310817592|ref|YP_003949950.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309390664|gb|ADO68123.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 640 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286 ID + T FD + + +L ++ ++L E+ I++ GHTD N R Sbjct: 523 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTDNV---GKPEANLR 579 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 LS RA + L + GV+ R+ G+ R + + NRR+D + R+G Sbjct: 580 LSQQRAEAVRDYLARKGVAPQRLEA-KGYGQERPIAPNTTSKGRATNRRVDFITTTREG 637 >gi|116249130|ref|YP_764971.1| putative outer membrane porin involved in nitrogen fixation [Rhizobium leguminosarum bv. viciae 3841] gi|16326461|gb|AAL17783.1|AF361470_3 ImpK [Rhizobium leguminosarum bv. trifolii] gi|115253780|emb|CAK12174.1| putative outer membrane porin involved in nitrogen fixation [Rhizobium leguminosarum bv. viciae 3841] Length = 510 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 8/146 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + L+ L + K V + +L+ I N+ +F S+ + +LQ+IG Sbjct: 337 RLDNLLAFLQPEVEKKLVTLSDSNGRLLVRIS---NSGLFATGSAEVSQKFHDLLQRIGG 393 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 LA + G+TD P R + NW LS RA + ++L ++ G A Sbjct: 394 ALAAENFRAVVVGYTDNVPIRTVQFPSNWHLSEARAKAVGEILSSFTGPGAILT--EGRA 451 Query: 317 HHRLKIASDPMNSA--NRRIDILVED 340 A+D NRR +ILV Sbjct: 452 DTDPIAANDTPEGREMNRRTEILVLT 477 >gi|114332359|ref|YP_748581.1| OmpA/MotB domain-containing protein [Nitrosomonas eutropha C91] gi|114309373|gb|ABI60616.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91] Length = 220 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 18/158 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPET 248 KR+++ ++ + +G GV+ T ++++I + FD S+ P Sbjct: 73 KRMEEQKIQMENATAGT-------GVMVSQTADNRLMLNI---PSDISFDTGSAQIKPGF 122 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L L ++ ++I GHTD + + A +N LS++RA S + L GV Sbjct: 123 RPILDSFATSLLNNPGTHVTIVGHTDNT--GSDAVNN-PLSVNRAASTREYLAGRGVPFQ 179 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 RI +I G ++ +++ + NRR++I V + +G Sbjct: 180 RI-QIDGRGSYQPVASNNTAAGRARNRRVEIYVSETRG 216 >gi|330503720|ref|YP_004380589.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328918006|gb|AEB58837.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 262 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 80/240 (33%), Gaps = 13/240 (5%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 + D + T + Q L ++ + D G+ L D + Sbjct: 26 TPTGAADARHRLTQLQNDPQLASRIPVSLKAAETAVLAAEQPRTDEVVGQHLVVMADRKV 85 Query: 166 SINKEEN-YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTG 223 I + + ++ + RL ++ V + G+ E T G Sbjct: 86 EIARARALERFYEDQRRQLGEQRESARLDSRTREADQAQQRNVDLQRQIDGLNAEETERG 145 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282 +L+++ D +F + L + + L E ++I GHTD Sbjct: 146 LLVTLGDL----LFASGRAELNGNANHNLATLTDFLNRHPERTVTIEGHTDNV---GSES 198 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 N+ LS RA S L G++ R+ SG +D NRR++I++ + Sbjct: 199 ANFGLSQRRADSVKSHLQSQGIAASRLLA-SGMGEGSPVAGNDSAEGRQLNRRVEIIISN 257 >gi|325105244|ref|YP_004274898.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324974092|gb|ADY53076.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 285 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 9/147 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ ++ V + + + IS+ D ++ S L KI ++ Sbjct: 127 LTNNLTRSLSREELRDVDIQVLKGVVYISLADNM---LYKSGSYEISDRADQTLSKIAKI 183 Query: 259 LAHSTEV-ISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315 + + I G+TD P R+NW LS+ RA S Q L K GV R++ G Sbjct: 184 IKDYKNYGVLIEGNTDNVPISQTNIRNNWDLSVLRASSVVQSLQTKYGVDPKRLTA-GGR 242 Query: 316 AHHRLKIASDPMN--SANRRIDILVED 340 + + S NRR I++ Sbjct: 243 GEYNPVAPNSTEEGKSKNRRTQIIITP 269 >gi|167034765|ref|YP_001669996.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861253|gb|ABY99660.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 270 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 84/192 (43%), Gaps = 20/192 (10%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + + L + ++ L + L + +Q K + S ++ L + Sbjct: 90 EIASEHAKLALNQERQAKLDLERQRLQLALREAKLASVQQQGKWVESQIAALAS------ 143 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTD 273 E T G+++++ D +FD S+ + K+ + L + + I G+TD Sbjct: 144 ---EQTDRGLVMTLGD----VLFDTGSADLKNSASRTVLKLVQFLQLNPRRVVRIEGYTD 196 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331 ++ +A DN +LS DRA S +L+ G+ E R+ ++ G+ AS+ + N Sbjct: 197 ST---GLAEDNLKLSRDRAQSVADMLVDLGIDEKRL-QVEGYGDQYPIEANASERGRAQN 252 Query: 332 RRIDILVEDRQG 343 RR++I+ D +G Sbjct: 253 RRVEIVFSDDKG 264 >gi|33595424|ref|NP_883067.1| hypothetical protein BPP0729 [Bordetella parapertussis 12822] gi|33599804|ref|NP_887364.1| hypothetical protein BB0815 [Bordetella bronchiseptica RB50] gi|33565502|emb|CAE40138.1| putative outer membrane protein [Bordetella parapertussis] gi|33567401|emb|CAE31314.1| putative outer membrane protein [Bordetella bronchiseptica RB50] Length = 426 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNW 285 S++ R +F+ + VL ++ E L + I +RG+TD P R NW Sbjct: 296 SVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNW 355 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LS RA + V+ R+ + G +D S NRR++I V Sbjct: 356 HLSQARAEAVKAVIDARLGQAGRV-RAEGRGEADPLAPNDTPAGRSVNRRVEITVM 410 >gi|88811500|ref|ZP_01126755.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231] gi|88791389|gb|EAR22501.1| hypothetical protein NB231_12214 [Nitrococcus mobilis Nb-231] Length = 435 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSA 295 F S+ VL K+ L + + GHTD P R++ +DN+ LS RA +A Sbjct: 324 FRSGSAELSAAYAPVLDKVAGALKQVPGRVLVVGHTDDVPIRSLRFKDNYELSRQRALNA 383 Query: 296 YQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDIL 337 + L + R+ G + + + + NRRI+I+ Sbjct: 384 AERLKERLDDPGRV-SYLGVGPDQPRYRPVDTPENRARNRRIEII 427 >gi|308126352|ref|ZP_07663724.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] gi|308109323|gb|EFO46863.1| chemotaxis protein LafU [Vibrio parahaemolyticus AQ4037] Length = 182 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 12/159 (7%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++ K+ A + G+WK+ +ADFM LMA FLV+W++ D + +KAI + Sbjct: 2 QKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIVAHL 61 Query: 70 NPFGKNLMTASKGIFDEQ--NPPERS-SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + S +FD+ NP + S S + IDL+ D + + S+ + Sbjct: 62 H---------SSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVVSSYFQGDGDG 112 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 E N E E + ++ ++ Sbjct: 113 PEINSLVPGTFDTQEQLAALAKVIEEMTRADQRARKRQR 151 >gi|187918154|ref|YP_001883717.1| flagellar motor protein MotB [Borrelia hermsii DAH] gi|119861002|gb|AAX16797.1| chemotaxis MotB protein [Borrelia hermsii DAH] Length = 262 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 20/176 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 S + + ++ K+ ++K + ++ V V+ G+++S++ FD Sbjct: 81 SFMSLPSTEKNKQASQVSK--NKSIIEFVEKIQSNKVIVREHERGVVVSLLAD---AFFD 135 Query: 239 KSSSIPL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRA 292 +S+ + +QKI + I GHTD I + NW LS RA Sbjct: 136 SASAEVKLDDNRETIQKIASFIGFLDNQSYNFKIEGHTDNVDVNINGIWKSNWELSSARA 195 Query: 293 YSAYQVLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + ++ + +I +SGFA + D + NRRIDIL+ Sbjct: 196 VNMLEQILNY-TDQSKIQSIESKFEVSGFAGSKPVATDDTPEGRAYNRRIDILITS 250 Score = 41.0 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPFG 73 ++ + + + Y D +T+L+ FF+ M+ +N ++ K + F G Sbjct: 4 LRVRKKRSKCEEGAPDYMLTYGDMVTLLLVFFVTMFSLNDIILKENVLKIMSASFTGSG 62 >gi|78049429|ref|YP_365604.1| hypothetical protein XCV3873 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928969|ref|ZP_08190130.1| flagellar motor protein [Xanthomonas perforans 91-118] gi|78037859|emb|CAJ25604.1| OmpA family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540658|gb|EGD12239.1| flagellar motor protein [Xanthomonas perforans 91-118] Length = 223 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++SS L V + +T + ++++D R +F +S P Sbjct: 43 QLSSRLDAEVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102 Query: 247 ETIVVLQKIG----EVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + L E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKSLATPLTHYLRARDEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200 >gi|315186462|gb|EFU20222.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578] Length = 395 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +K+ + + D + ET+ G+ I + F S++ LPE L+KI Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSAVLLPEEQEKLRKIA 310 Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 ++L+ E + + GHT LS++RA + LMK GV I G+ Sbjct: 311 QILSRYPERDLLVEGHT---ALAGTPEGRLALSIERAKAVADFLMKLGVRRPEQIVIQGY 367 Query: 316 AHHRLK--IASDPMNSANRRIDILVED 340 R A++ S NRR++I + + Sbjct: 368 GATRPIADNATEAGRSRNRRVEITILE 394 >gi|304383212|ref|ZP_07365685.1| OmpA family protein [Prevotella marshii DSM 16973] gi|304335683|gb|EFM01940.1| OmpA family protein [Prevotella marshii DSM 16973] Length = 278 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ S L KI ++ Sbjct: 120 LTNNLTRSLSKEEMKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 176 Query: 259 LAHS-TEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315 + + I G+TD P R+NW LS RA S Q L + GV R++ G Sbjct: 177 ITDYKDYDVLIEGNTDNVPISRENIRNNWDLSCLRASSVVQYLQTRYGVDPKRMTA-GGR 235 Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341 + + NRR I++ + Sbjct: 236 GEYNPLSDNSTALGKQRNRRTQIIITPK 263 >gi|203287740|ref|YP_002222755.1| flagellar motor rotation protein B [Borrelia recurrentis A1] gi|201084960|gb|ACH94534.1| flagellar motor rotation protein B [Borrelia recurrentis A1] Length = 262 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 20/176 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 S + + + K+ +K + ++ V V+ G+++S++ FD Sbjct: 81 SFMSLPSTAKNKQASQASK--NKSIIEFVEKIQSNKVIVRRHERGVVVSLLAD---AFFD 135 Query: 239 KSSSIPL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRA 292 +S+ + V+QKI + I GHTD I + NW LS RA Sbjct: 136 SASAEVKLDDNRDVIQKIASFIGFLDNQGYNFKIEGHTDNVDVNINGIWKSNWELSSARA 195 Query: 293 YSAYQVLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + ++ +I +SGFA R D + NRRIDIL+ Sbjct: 196 VNMLEQILNY-TDHSKIESIESKFEVSGFAGSRPVATDDTPEGRAYNRRIDILITS 250 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 15 IIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPF 72 I KK + + Y D +T+L+ FF+ M+ +N ++ K + F Sbjct: 2 IFKTKKKRSKCEDGGAPEYMVTYGDMVTLLLVFFVTMFSLNDVIMKENVLKIMSASFTGS 61 Query: 73 G 73 G Sbjct: 62 G 62 >gi|83859947|ref|ZP_00953467.1| flagellar motor protein [Oceanicaulis alexandrii HTCC2633] gi|83852306|gb|EAP90160.1| flagellar motor protein [Oceanicaulis alexandrii HTCC2633] Length = 338 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 104/319 (32%), Gaps = 18/319 (5%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 F+ L LV+ + A + A+ Q + L + + + Sbjct: 21 FVDALATLLLVIVFLLAVFTAGQFALSQALTGRDEQLAELNGRLATLAEELNLAQSENER 80 Query: 100 LSID-EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK--GKD 156 LS+ +T+ + L + Q L+ + +S E N + + Sbjct: 81 LSLRVSTLTQENGALAETNAGLTSQIAGLQEGLAAARSSLAEEEALNEEAQATVALLNNQ 140 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + + +N+ N ++ + + +RL + L+ ++ + + Sbjct: 141 MAALREELARLNEALNASEAREAELEAEVVNLGRRLNAALASEVARLARYRSEFFGRLIE 200 Query: 217 FETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVI 266 R+G+ + +F S+ E L I + + V+ Sbjct: 201 VLGDRSGVRVVGDRFVFETDVLFASGSAELSEEGRRSLAPIADAIIQLTDEIPDDLDWVL 260 Query: 267 SIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-- 322 + GHTD P A NW LS R+ S GV R+ +GF H Sbjct: 261 RVDGHTDRVPLGPNAPFESNWELSTARSLSVIAYFESRGVPPRRLLA-AGFGEHYPIAEG 319 Query: 323 ASDPMNSANRRIDILVEDR 341 + + NRRI++ + R Sbjct: 320 RTQEAYARNRRIELKLTSR 338 >gi|327402922|ref|YP_004343760.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318430|gb|AEA42922.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 321 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 106/286 (37%), Gaps = 13/286 (4%) Query: 60 DTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 + +K + N + + + D Q ++ ++ I L D +++ + Sbjct: 28 EREKVCSEELNKYKASSIENEGKAKDLQVMVDQFRKDIISLKKDTLELGSNLRFLQTQYD 87 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE---ENYFLP 176 + + + N K ++L + D K++ E + L Sbjct: 88 LMVSQNEVYEQKLDQMRMKGQKESANYQADIDSKNQELQRKEDALKTLESELIAKEKLLI 147 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + + KR D K++ + +S + KG+ I +S+ + Sbjct: 148 EREERVTELEEMIKRKDDAMKQLKTRVSAALKGFENKGLTVVEKNGKIYVSL---EAKLL 204 Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAY 293 F S+ E L + +VL I + GHTD + A + NW LS+ R+ Sbjct: 205 FASGSTTVEAEGKKALVDLAKVLENEKDLEIIVEGHTDTDKLASTAHPKSNWELSVLRST 264 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + ++++ + ++ ++ +G + A D + NRRI++++ Sbjct: 265 AVVEIMIGNSKMNPMQLMA-AGRGEYHPVDAKD--KAKNRRIEVII 307 >gi|317505336|ref|ZP_07963264.1| OmpA family protein [Prevotella salivae DSM 15606] gi|315663550|gb|EFV03289.1| OmpA family protein [Prevotella salivae DSM 15606] Length = 284 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 14/153 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + IS+ D ++ S L KI ++ Sbjct: 120 LTNNLTRSLSREEMKEVDVRVLKGVVYISLADNM---LYRSGSYEINDRAEETLGKIAKI 176 Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + I G+TD P + R+NW LS RA S Q L GVS R++ Sbjct: 177 IMDYKDYDVLIEGNTDNVPVNTKSAAMKNIRNNWDLSALRASSVVQYLQDHFGVSPKRLT 236 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 G + +D NRR I++ + Sbjct: 237 A-GGRGEYNPVATNDTELGKQRNRRTQIIITPK 268 >gi|188532760|ref|YP_001906557.1| hypothetical protein ETA_06130 [Erwinia tasmaniensis Et1/99] gi|188027802|emb|CAO95659.1| OmpA family protein [Erwinia tasmaniensis Et1/99] Length = 413 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 ++ L S++ + +F +S+ VL ++ + + + I + G+ Sbjct: 268 IEQGLVAVRDEADR-SVVTLKGDGLFTSASTEVRGRYAEVLDRVAAAMNNVSGRILVVGY 326 Query: 272 TDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328 +D P R+ N+ LSL RA S L + R+ G ++ Sbjct: 327 SDNVPIRSARFASNYELSLARAQSVSGQLRQHLSQPQRVKA-EGRGESSPLAPNNSAENR 385 Query: 329 SANRRIDILVE 339 + NRR++I + Sbjct: 386 ARNRRVEITLL 396 >gi|115373816|ref|ZP_01461109.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|115369215|gb|EAU68157.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] Length = 669 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286 ID + T FD + + +L ++ ++L E+ I++ GHTD N R Sbjct: 552 IDIKETVYFDSGKATIQRRSFKLLDQVAKLLREHPEIESITVEGHTDNV---GKPEANLR 608 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 LS RA + L + GV+ R+ G+ R + + NRR+D + R+G Sbjct: 609 LSQQRAEAVRDYLARKGVAPQRLEA-KGYGQERPIAPNTTSKGRATNRRVDFITTTREG 666 >gi|58866398|gb|AAW82963.1| Omp52 [Leptospira santarosai serovar Shermani] Length = 456 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 12/183 (6%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + ++ K + E + S K + K+ ++ + A + V Sbjct: 279 AEEVRKILGGELPTGIESGSDPKKGSKNFPKQTLSWPEEEENKTKPETAKSSGPPVEIRR 338 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T GI IS+ N+ +FD +SS E + L+KI VL + I I GHTD Sbjct: 339 TEEGIAISL----NSVLFDHNSSQLKDEAKLELKKIASVLKKYEDREIRISGHTDN---S 391 Query: 279 NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N +LS +RA S + L G+ E R+ G+ + + NRR+D Sbjct: 392 GGDEYNRKLSRERALSVLKELRDEQGLEEKRM-SYEGYGKSKPIADNSTIQGRQKNRRVD 450 Query: 336 ILV 338 I + Sbjct: 451 ITI 453 >gi|203284201|ref|YP_002221941.1| flagellar motor rotation protein B [Borrelia duttonii Ly] gi|201083644|gb|ACH93235.1| flagellar motor rotation protein B [Borrelia duttonii Ly] Length = 262 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 20/176 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 S + + + K+ +K + ++ V V+ G+++S++ FD Sbjct: 81 SFMSLPSTAKNKQASQASK--NKSIIEFVEKIQSNKVIVRRHERGVVVSLLAD---AFFD 135 Query: 239 KSSSIPL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRA 292 +S+ + V+QKI + I GHTD I + NW LS RA Sbjct: 136 SASAEVKLDDNRDVIQKIASFIGFLDNQGYNFKIEGHTDNVDVNINGIWKSNWELSSARA 195 Query: 293 YSAYQVLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + ++ +I +SGFA R D + NRRIDIL+ Sbjct: 196 VNMLEQILNY-TDHSKIESIESKFEVSGFAGSRPVATDDTPEGRAYNRRIDILITS 250 Score = 46.4 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPFG 73 KK + + Y D +T+L+ FF+ M+ +N ++ K + F G Sbjct: 6 KKKRSKCEDGGAPEYMVTYGDMVTLLLVFFVTMFSLNDVIMKENVLKIMSASFTGSG 62 >gi|194366042|ref|YP_002028652.1| hypothetical protein Smal_2266 [Stenotrophomonas maltophilia R551-3] gi|194348846|gb|ACF51969.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 212 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246 ++S L V + +T + ++++D R + +F +S P Sbjct: 43 ELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLVDGRIGISGSVLFALNSDQLQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E +L+ + LA E++ + G TD +P R R DNW LS R+ + + L Sbjct: 103 EGQELLRSLAAPLAAYLGTREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV D + + F + A + + NRR++I Sbjct: 163 IADGVPADAVFAAA-FGSEQPVSSNADEAGRARNRRVEI 200 >gi|89889933|ref|ZP_01201444.1| putative outer membrane protein, ompA family [Flavobacteria bacterium BBFL7] gi|89518206|gb|EAS20862.1| putative outer membrane protein, ompA family [Flavobacteria bacterium BBFL7] Length = 457 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 + T +FD + E+ VL I +L SI GHTD+ A+ N Sbjct: 345 QLNQYAKTILFDTGKATIKAESAKVLSDITAILKKYPTAKFSIDGHTDSV---GSAKLNQ 401 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 RLS RA L+ +G+ E R+S + G+ R + + NRR++I + + Sbjct: 402 RLSDSRANEVKNYLVANGIDEFRLSSV-GYGEARPVADNKTKTGRAQNRRVEINLVN 457 >gi|298208824|ref|YP_003717003.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] gi|83848751|gb|EAP86620.1| putative flagellar motor protein MotB [Croceibacter atlanticus HTCC2559] Length = 280 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 99/241 (41%), Gaps = 15/241 (6%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 ++ + T +K+ + + N + + K + + + ++ Sbjct: 33 DNTRSTLTKTQVEKEELQAKYNSIQDRVEAYNTKINSLKDESDAKFETVGDVAVISENQK 92 Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV---KGVLFETTRTGIL 225 K+ L + +K+ K + +LA + +L+ + +N + + T ++ Sbjct: 93 KQMRKTLQNVDPQKLANAKTLQDSINLA--VGYSLTKSMRENFDGNDEDIDVNIDETVVM 150 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR-- 282 IS+ D +F+ S + +L+++ V+ + I GHTD + + Sbjct: 151 ISVSD---KLLFNSGSYRVSNKANSLLERLAAVINSEPAIEVMIEGHTDDRTVKQGSYIK 207 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 DNW LS +RA + + L V+ +++ +G + ++ +A+D +ANRR IL+ Sbjct: 208 DNWDLSTERATAIIRKLADDYNVAPEKMIA-AGRSSYKPLVANDSNENRAANRRTRILIL 266 Query: 340 D 340 Sbjct: 267 P 267 >gi|161526078|ref|YP_001581090.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189349207|ref|YP_001944835.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616] gi|160343507|gb|ABX16593.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189333229|dbj|BAG42299.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616] Length = 316 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 94/289 (32%), Gaps = 22/289 (7%) Query: 64 AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 N G + G P + + + + + Sbjct: 28 GAAYAQNAGGATVTPVGNGTVAASALPANAGAGSASAAASATLVRGTAGTLAPPPANAAP 87 Query: 124 YQRLENNIFYLSNSQQS------EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 Q + ++ + + + D + D+ + ++ K L Sbjct: 88 GQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQIEVGDVATPPNWSANVQKLLGTQLKQ 147 Query: 178 LSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISII 229 +SK ++ + + + ++I+S ++ + I G+ + G+L + Sbjct: 148 ISKGQLKINGTQIEMKGEVHNEAQRQQIASDMANTLNPTYTIKNGLRVSASEQGLLDQTL 207 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 R F+ S+ P+ +L ++ LA + I GHTD N LS Sbjct: 208 ANRTIE-FETGSATLTPQGKQILDQMAAALAKLQNRTVDIIGHTDN---SGNRTSNIALS 263 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 RA + L+ G++ +++ +G + +D + NRRI+ Sbjct: 264 QARADAVKGYLITKGIAPQQMT-TTGVGPDQPIAPNDTAEGRARNRRIE 311 >gi|114764496|ref|ZP_01443721.1| flagellar motor protein [Pelagibaca bermudensis HTCC2601] gi|114543063|gb|EAU46082.1| flagellar motor protein [Roseovarius sp. HTCC2601] Length = 634 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 90/243 (37%), Gaps = 16/243 (6%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ T + + + + E + ++ +++ E N Sbjct: 393 ELSQTEARASEAERQRELLNQQVAALRSQLSQLQGLLDEARESDAEAQVQLQNLGSELNA 452 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQ 231 L ++ E+ + ++ + + + L ++ + + GI I Sbjct: 453 ALARVAAEERRRRQLEEEERRRLEAQAEDLERYRSEFFGRLREVIGDQDGIRIEGDRFVF 512 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNIAR- 282 + +F + P + I +L ++ + GHTD +P R AR Sbjct: 513 SSEVLFAPGEARLSPLGEGEIANIAGILQRVMSDIPPGIDWILRVDGHTDDTPLRPGARF 572 Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 DNW LS RA S + L++ G+ R+S +GF ++ +D + NRRI++ + Sbjct: 573 ADNWELSQARALSVVRFLVEDMGIPPQRLSA-NGFGEYQPVDPADSPEARAQNRRIELKL 631 Query: 339 EDR 341 +R Sbjct: 632 TER 634 >gi|71735961|ref|YP_274192.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556514|gb|AAZ35725.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 271 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VLM GV E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|317153788|ref|YP_004121836.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944039|gb|ADU63090.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 247 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 18/209 (8%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK- 197 +E + + ++ + + + +E + + + ++K ++ Sbjct: 47 DTEKFSETFSSVTQALQGKLEKVSTSRITQEEAGVLIDQAIMRRQIIESQRKVFAEVKTL 106 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + GLV+ N G++ MF P+ + ++ + + Sbjct: 107 QTKKGVEGLVSANFEDGLITIRVP-----------GDVMFGSGQVNLSPKGVELVTALKD 155 Query: 258 V-LAHSTEVISIRGHTDA-SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + H + I I G+TD SP +N DNW +S RA + + L+ G+ R++ +G Sbjct: 156 FFIQHRDQNIKIIGYTDNISPGKNSRFLDNWEISALRAVNVLRELLGMGIESTRLTA-TG 214 Query: 315 FAHHRLKIAS--DPMNSANRRIDILVEDR 341 A+ + + + NRR++ ++E R Sbjct: 215 LAYLNPIYPNTSEEFRAKNRRVEFVLEKR 243 >gi|152985769|ref|YP_001345545.1| hypothetical protein PSPA7_0149 [Pseudomonas aeruginosa PA7] gi|150960927|gb|ABR82952.1| hypothetical protein PSPA7_0149 [Pseudomonas aeruginosa PA7] Length = 449 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ R +F +S+ E +L +I + L + + GH+D P + NW Sbjct: 330 SVVTIRGDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNRPIATLRYPSNW 389 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 +LS RA +L + R + G + AS + NRR++I V Sbjct: 390 KLSQARAQEVADLLGATTGEAGRFTA-EGRSDTEPVATNASAEGRARNRRVEITV 443 >gi|332715427|ref|YP_004442893.1| OmpA-like porin [Agrobacterium sp. H13-3] gi|325062112|gb|ADY65802.1| OmpA-like porin [Agrobacterium sp. H13-3] Length = 503 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 15/162 (9%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 KI+ ++ RL+ K+ + L V + V + + I N+ +F S Sbjct: 325 KIVEPRQPSRLE----KLMAFLQPEVDRKL---VTLADVNGRLRVRI---NNSGLFTTGS 374 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM 300 + P+ ++Q+IG LA + G+TD P + + NW LS RA + +L Sbjct: 375 ADVSPQFRDLIQRIGGALAAEKFRAVVIGYTDTVPIKTVEFPSNWHLSEARAKAVGDILS 434 Query: 301 KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 + E ++ G A ++ NRR +I+V Sbjct: 435 QFTGPEAILT--EGRADSDPIADNKTEEGRQINRRTEIMVLT 474 >gi|56476024|ref|YP_157613.1| outer membrane lipoprotein [Aromatoleum aromaticum EbN1] gi|56312067|emb|CAI06712.1| outer membrane lipoprotein containing OmpA/MotB domain [Aromatoleum aromaticum EbN1] Length = 232 Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 17/152 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +++ ++ ++G E R G I + N FD + + P+ Sbjct: 74 RQMDKQEAELREQMAGT---------GVEVQRQGDTIRLQAPENIT-FDTNRADIKPQFQ 123 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL ++ + + + VI + GHTD+ A N LS +RA + L++ GV +R Sbjct: 124 PVLGQLAQSIQQYPDTVIQVEGHTDSV---GSASYNQTLSENRAGAVRSYLIQRGVDANR 180 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILV 338 ++ + G+ R ++ + NRR+++L+ Sbjct: 181 LAAV-GYGLTRPVADNSTAAGRAQNRRVEMLI 211 >gi|325286152|ref|YP_004261942.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321606|gb|ADY29071.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 452 Score = 93.0 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 92/261 (35%), Gaps = 29/261 (11%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G+ P+ D +K++ + GS + I ++ + Sbjct: 212 AGLEAFNGCPDADGDGIED-------SKDACPNEAGSKEMNGCPDADGDGIADKDDACPN 264 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 E +L + D D + N P K+K + + + ++A Sbjct: 265 EAGTAALNGCPDADGDGVADKDDKCPSEAGPAANNGCPWEDKDKDGVLDKDDKCPEVAGT 324 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ V + + K + D T +FD S E+ V+ I + Sbjct: 325 VANNGCPEVTEEVQKK-------------LNDYARTILFDTGKSSIKAESTAVMVDIITI 371 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L ++ GHTD+ A N +LS RA S + L++ G+ E R+S + G+ Sbjct: 372 LKEYPNAKFTVEGHTDSV---GSATLNQKLSESRALSVKEFLVEKGIGEFRLSAV-GYGE 427 Query: 318 HRLKIASDPMNSA--NRRIDI 336 + + NRR++I Sbjct: 428 DKPIATNKTRAGRKQNRRVEI 448 >gi|218658643|ref|ZP_03514573.1| putative outer membrane porin involved in nitrogen fixation [Rhizobium etli IE4771] Length = 262 Score = 93.0 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 8/200 (4%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + E+ +L + E P ++ + L Sbjct: 35 NRASDGTFERLANLPPRETPSVLVKVPEPPRESPPVIVAQTPPPPPPPQVKPPSRLDNLL 94 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + L + K V + +L+ I N+ +F S+ + +LQ+IG LA Sbjct: 95 AFLQPEVEKKLVTLSDSNGRLLVRIS---NSGLFATGSAEVSEKFHDLLQRIGGALAAEK 151 Query: 264 EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + G+TD P R I NW LS RA + ++L ++ G A Sbjct: 152 FRAVVVGYTDNVPIRTIQFPSNWHLSEARAKAVGEILASFTGPGAILT--EGRADSDPIA 209 Query: 323 ASDPMNSA--NRRIDILVED 340 +D NRR +ILV Sbjct: 210 GNDTQEGREMNRRTEILVLT 229 >gi|254489059|ref|ZP_05102263.1| type IV / VI secretion system protein, DotU family [Roseobacter sp. GAI101] gi|214042067|gb|EEB82706.1| type IV / VI secretion system protein, DotU family [Roseobacter sp. GAI101] Length = 478 Score = 93.0 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 13/176 (7%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 E LP + E + + + + ++ L+ +A + + G I+ + Sbjct: 310 ERVALPDVPVEPQVTVYEAPKTGQV-DRVRDQLADEIAAGL-----TTVSEEGDFIA-VR 362 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF--RNIARDNWRLS 288 F + +++ E+ ++ +I VL + I + GH+D P R + N LS Sbjct: 363 LGEALQFGEGAAVLASES-PIIARIATVLENEPGSIIVEGHSDNIPLSGRGRYKTNEELS 421 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA + VL + DR++ + G + + +D S NRR+DIL+ Q Sbjct: 422 AARAAAVSDVLAQYMSDPDRMT-VEGAGASKPLVRADTPEARSRNRRVDILLLKEQ 476 >gi|237654026|ref|YP_002890340.1| OmpA/MotB domain protein [Thauera sp. MZ1T] gi|237625273|gb|ACR01963.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 374 Score = 93.0 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 21/197 (10%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 ++ ++ L K+ A + +L++L ++++ L+G V + F + Sbjct: 179 AAVREQLEQLNAALDAAKLAAKDKDLKLEELGRELNLALAGRVKELARYRSEFFGRLQEV 238 Query: 225 L-----ISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVIS 267 L + I+ R + +F +S + +V L ++ E L V+ Sbjct: 239 LGKRKDVQIVGDRFVFSSEVLFASASDEVSADGMVQLTRLAETLKTLSADMPKDLPWVLQ 298 Query: 268 IRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + GHTD P NW LS RA + + L G+ +R++ +G+ A Sbjct: 299 VDGHTDRRPIATARFPSNWELSTARALAIVKFLRGQGIPPERLAA-TGYGEFHPLDARST 357 Query: 327 MNS--ANRRIDILVEDR 341 + NRRI++ + R Sbjct: 358 EEAYTRNRRIELKLTSR 374 >gi|163742880|ref|ZP_02150264.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10] gi|161383844|gb|EDQ08229.1| hypothetical protein RG210_12200 [Phaeobacter gallaeciensis 2.10] Length = 655 Score = 93.0 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 19/205 (9%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS---STLSGL 206 + + +L + +N + ++L +KRL+ A+++S L Sbjct: 447 KARDAAQSVQMQNLGQDLNAALARAAAEERRRRLLEESERKRLEAEAEQLSSKAQDLEQY 506 Query: 207 VADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262 ++ + + G+ I + +F S+ P + K+ +L Sbjct: 507 RSEFFGRLRDVLGNQEGVRIEGDRFVFASEVLFSPGSADLSPAGRAEIGKVAGILQAVAA 566 Query: 263 ------TEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 +I + GHTD +P DNW LS RA S + ++++ G+ +R+S + Sbjct: 567 AIPPEINWIIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-N 625 Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336 GF ++ + + NRRI++ Sbjct: 626 GFGEYQPVNPAPTAVARAQNRRIEL 650 >gi|296271644|ref|YP_003654275.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296095819|gb|ADG91769.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299] Length = 271 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 108/231 (46%), Gaps = 12/231 (5%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 + K ++ E + + Q+ + + T + +K D + D+E + Sbjct: 47 IPEKTVPIQEEIVEGPSEKVVPPIIEDQKDDAVIDENTDEDQKKIDDIEKPDIENADIIV 106 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ + K + + K++++L+ KI + D+ ++ + + +T I+ + Sbjct: 107 DDK--KEVDNTKKVVIPEDKKIEELSHKIQ---PKNIQDDTIESKMDKNKKTQDEINAVI 161 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 ++ F + + E+ V+++I ++L ++ I I GHTDA ++ + W +SL Sbjct: 162 SKDHIFFKRLGTDITDESYKVVEQIAKILKNNPSVKIEIGGHTDAKGEADVNQ--W-ISL 218 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S + L K G++EDRI+ + G+ + + +D +S NRR++ + Sbjct: 219 QRAKSVKKELEKLGIAEDRITAV-GYGESQPLVPNDKNGYSSENRRVEFKI 268 >gi|229593379|ref|YP_002875498.1| hypothetical protein PFLU6014 [Pseudomonas fluorescens SBW25] gi|229365245|emb|CAY53556.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 429 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+G + ++I G + + S++ R +F +SS + + ++ +I + + Sbjct: 287 RLAGFLVEDIKAGRV--AVEDAVDRSVVTIRGDELFASASSSIVDDYQPLMLRIADAIRK 344 Query: 262 STEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D P + NW LS RA S +L DR S G + Sbjct: 345 VKGQVRVTGHSDNRPIATLRFPSNWALSEARAKSVLDILAAKTGQADRFSA-EGRSDTEP 403 Query: 321 K--IASDPMNSANRRIDILVE 339 A+ + NRR++I V Sbjct: 404 VATNATAEGRARNRRVEITVL 424 >gi|295095609|emb|CBK84699.1| type IV / VI secretion system protein, DotU family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 412 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 8/176 (4%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + + L + + ++ ++ + L ++ L G + I G+ Sbjct: 225 LGDNTSPVLAKIYQSQLPETTIQQPARQLPAVLN--LRGFLKPEIDAGL-VAVKDEADR- 280 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +S++ V+ +I + + + + I + G++D P R+ N+ Sbjct: 281 SVVILKGDGLFASASTVVRDRYEPVIDRIAQAMNNVSGKILVVGYSDNVPIRSARFASNY 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 LSL+RA S + L S +R+ G + + NRR++I + Sbjct: 341 ELSLERARSVQKQLQGSLSQPERVKA-EGRGEINPVAPNTTPENRARNRRVEITLL 395 >gi|21244837|ref|NP_644419.1| hypothetical protein XAC4120 [Xanthomonas axonopodis pv. citri str. 306] gi|21110541|gb|AAM38955.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 451 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 8/148 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ LS +++ + E + + + MF + ++ +I Sbjct: 309 RLKQLLSAQERAGLLR--VDEQADGQTRVRLS---SAAMFASGGVEVELQQRGLIAQIAA 363 Query: 258 VLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + GHTD P R++ DN+ LS RA + QVL + R+ I A Sbjct: 364 AIEQLPGRVIVVGHTDDVPVRSLRFQDNYALSAARAQALAQVLQAQLSTPGRVEAIGAGA 423 Query: 317 HHRL--KIASDPMNSANRRIDILVEDRQ 342 + + + NRR++IL + + Sbjct: 424 SQPIAQPVQLPANRARNRRVEILFQPGE 451 >gi|153003419|ref|YP_001377744.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026992|gb|ABS24760.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 205 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVIS 267 + K + T GIL+++ +N +FD +S+ E + L ++G++LA + + I Sbjct: 74 KELEKVAETKRTENGILVNM---KNDILFDTNSADLKGEAVTQLTQVGDILAKYADDRIR 130 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 I GHTD+ N LS RA S VL+ GV E++I+ + G + + Sbjct: 131 IEGHTDS---SGSDSLNEALSRKRADSVRTVLVSRGVREEQIT-VVGNGETKPIADNATK 186 Query: 327 -MNSANRRIDILVE 339 + NRR+++ ++ Sbjct: 187 EGRAKNRRVELHID 200 >gi|91218366|ref|ZP_01255310.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] gi|91183504|gb|EAS69903.1| putative flagellar motor protein MotB [Psychroflexus torquis ATCC 700755] Length = 277 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 20/212 (9%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E N + S + + + E + E N + + + A K + AK + Sbjct: 62 EGYNNKIASLSTEKEGMMVQVPNENLVLSENNKAAMRKTLKSVPAAKL-----EGAKSLK 116 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSSIPLPETIVVLQK 254 +L+ +A NI K + + + ISI + + +F SS + +L + Sbjct: 117 DSLNIAIAHNISKNMGESGSD--LNISIEETMVKINIDDNLLFGDSSFRVGSDADEILSR 174 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 I +VL + + GHTD+ + + DNW LS R+ + + L K GV+ D++ Sbjct: 175 IAKVLNSEPSLEVLVEGHTDSRTIKKDSYIIDNWDLSARRSAAIVRRLENKFGVASDQLI 234 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVED 340 ++G + + + +D + + NRR I++ Sbjct: 235 -VAGRSSYDPLVPNDTKDNMAKNRRTQIVIMP 265 >gi|190574725|ref|YP_001972570.1| hypothetical protein Smlt2808 [Stenotrophomonas maltophilia K279a] gi|190012647|emb|CAQ46275.1| putative OmpA family membrane protein [Stenotrophomonas maltophilia K279a] Length = 212 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246 ++S L V + +T + ++++D R + +F +S P Sbjct: 43 ELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLVDGRIGISGSVLFALNSDQLQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E +L+ + LA E++ + G TD +P R R DNW LS R+ + + L Sbjct: 103 EGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV D + + F + A++ + NRR++I Sbjct: 163 IADGVPADAVFAAA-FGSEQPVSSNANEEGRARNRRVEI 200 >gi|262198644|ref|YP_003269853.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081991|gb|ACY17960.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 637 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 8/117 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWR 286 ID + F+ +S+ E+ +L + + + ++ I ++GHTDA R A N R Sbjct: 522 IDILDKVYFEFNSANIKRESFPILDAVAATIMGNPDIRLIEVQGHTDA---RGSASYNLR 578 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 LS +RA S L+K GV DR+ G+ + +S+ ++ NRR++ L+ +R Sbjct: 579 LSDERAKSVRAYLLKKGVEPDRVDA-KGYGETKPIDSSNTEKAHATNRRVEFLIMNR 634 >gi|163786625|ref|ZP_02181073.1| putative flagellar motor protein MotB [Flavobacteriales bacterium ALC-1] gi|159878485|gb|EDP72541.1| putative flagellar motor protein MotB [Flavobacteriales bacterium ALC-1] Length = 283 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 12/207 (5%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK-- 198 E + + K + T ++ L + EK+ K K +LA + Sbjct: 70 EDVEGLAIENKAKFEVSKDGTVASGVSKEKMRATLQNVDPEKLAGAKTLKDSMNLAVQHN 129 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +S ++ + + ++ + T ++ISI D +F+ +S + +L+K+ +V Sbjct: 130 LSKAMNTEDLNE-DEDIVVDINDTVVMISIADDM---LFNTASYRVSNKADKILKKLADV 185 Query: 259 LAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + + GHTD+ DNW LS+ RA S + L K V+ +++ SG Sbjct: 186 INSEPSLDVMVEGHTDSRSINTAKVSDNWELSVLRATSVVKKLQKQFKVAPEQLIA-SGR 244 Query: 316 AHHRLKIASD--PMNSANRRIDILVED 340 + ++ + +D + NRR I++ Sbjct: 245 SSYQPLVENDSRDNRAKNRRTRIILMP 271 >gi|330959066|gb|EGH59326.1| OmpA/MotB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 271 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + + D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQANADFQKVKEDTDVLRSAPKDVIRSGESLARAERLSSYLGSGADVSHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLLLSQERLAKMDLERQRMQLALREAKLASAQQQGRWLEDQILSLATTQT 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 ++N LS DRA + +LM G+ E RI ++ G+ AS+ + NRR++I+ Sbjct: 201 DRQENLNLSKDRAQAVADMLMDLGIDEKRI-QVQGYGQQFPVDGNASERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|260591686|ref|ZP_05857144.1| OmpA family protein [Prevotella veroralis F0319] gi|260536329|gb|EEX18946.1| OmpA family protein [Prevotella veroralis F0319] Length = 288 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 14/232 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q + NN S Q + S + ++ + + + + Sbjct: 43 QSAKETIAANNARIKSLEDQLAQARESAAALQGSLDNSLRNANSNNINISKLVDQINESN 102 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + ++ K + L +++ L+ ++ +K V + + + IS+ D ++ Sbjct: 103 QYIRHLVEVKSKSDSLNMVLTNNLTRSLSREELKEVDVQVLKGVVYISLADNM---LYKS 159 Query: 240 SSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRA 292 S L KI +++ + I G+TD P R+NW LS RA Sbjct: 160 GSYEINDRAEQTLSKIAKIITDYSDYDVLIEGNTDNVPINTANDKMKNIRNNWDLSCLRA 219 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 S Q L V+ R++ G + +D NRR I++ + Sbjct: 220 ASVVQYLQDHFNVNPKRLTA-GGRGEYNPLATNDTELGKQRNRRTQIIITPK 270 >gi|126725798|ref|ZP_01741640.1| hypothetical protein RB2150_06318 [Rhodobacterales bacterium HTCC2150] gi|126705002|gb|EBA04093.1| hypothetical protein RB2150_06318 [Rhodobacterales bacterium HTCC2150] Length = 1017 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 17/201 (8%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D + T + + L S++K +A ++ L ++ + L +D + Sbjct: 819 DAAQGTQITVLTEELNTALLRTASEQKKIAKLEAAEVKRLEEE-AKKLESFKSDFFGQLR 877 Query: 216 LFETTRTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEV 265 R G+ I + +F + P + K+ ++L V Sbjct: 878 QVLAGREGVKIVGDRFVFSSEVLFPPGGAELSPAGEAEVAKVADILQDVIDKIPANIDWV 937 Query: 266 ISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI 322 I + GHTD F + +NW LS RA S Q ++ S G+ DR+S +GF ++ Sbjct: 938 IRVDGHTDNVAFNGLGKYSNNWELSQGRALSVVQFMVSSFGLPPDRLSA-NGFGEYQPIN 996 Query: 323 ASDP--MNSANRRIDILVEDR 341 +D + NRRI++ + ++ Sbjct: 997 LADTPEARAQNRRIELKLTEK 1017 >gi|289624411|ref|ZP_06457365.1| ompA family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646675|ref|ZP_06478018.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867435|gb|EGH02144.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987431|gb|EGH85534.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 271 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVSHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VLM GV E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQQFPVNANASERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|294678506|ref|YP_003579121.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477326|gb|ADE86714.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 422 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 27/246 (10%) Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 + E ++Q + + DL D K+ + E + L + Sbjct: 178 AEKTLTETRAESDRKAEQVARLNQQVAALRGQLADLQAVLDEAKARDTEAKVQVEALGSQ 237 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR--------- 232 A+ + Q + + + G + ++D R Sbjct: 238 LNSALAQVAAEQKRRAALEEEARRKAEAEAKDLARYRSEFFGRMSQLLDGRAGVRVVGDR 297 Query: 233 ----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNI 280 + +F S+ PE + ++ E I + G TD +P Sbjct: 298 FVFSSEVLFQPGSADLSPEGQAQISRVAETFRELAAEIPPEIDWLLEVDGFTDDTPLSGQ 357 Query: 281 A--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 +DNW LS RA S + L+++ G + R++ +GF R A S + NRRI+ Sbjct: 358 GEFKDNWELSQARALSVVKYLIEAQGFAPKRLAA-AGFGEFRPVAAGKSPEARAQNRRIE 416 Query: 336 ILVEDR 341 + + +R Sbjct: 417 LKLTER 422 >gi|283786435|ref|YP_003366300.1| T6SS protein Cts1U [Citrobacter rodentium ICC168] gi|282949889|emb|CBG89514.1| T6SS protein Cts1U [Citrobacter rodentium ICC168] Length = 451 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLD 290 + +F S PE + V+++I + + I GHTDA+P +N LS Sbjct: 341 KGDALFLSGSVRVQPEMVKVIERIASEVQRVNGDVLIVGHTDATPISRPGLPNNVALSEK 400 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA Q + +G+ E ++ K+ G + + NRR++ V Sbjct: 401 RAAEVAQYFIAAGLPESKV-KVRGVGSSQPVANEATAQGRAKNRRVEFFV 449 >gi|162454068|ref|YP_001616435.1| hypothetical protein sce5792 [Sorangium cellulosum 'So ce 56'] gi|161164650|emb|CAN95955.1| hypothetical protein sce5792 [Sorangium cellulosum 'So ce 56'] Length = 985 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 12/219 (5%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 NI +S T ++ + S K+ A Sbjct: 775 KTGNIVGTVKDAESGDAVAGATIRLVDAAGREQTATADGSGAFRFPDLPAGAVTLKVEAQ 834 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + + S + N + G I I Q + F+ S+ L Sbjct: 835 GYMNHVNQADVRTSEDTRAALTVNKRPKISLVKVL-GNEIKISRQIH---FETDSAKILG 890 Query: 247 ETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 ++ ++++I +VL + + I+GHTD + N LS RA + L+++GV Sbjct: 891 DSNALMEEIADVLQRNPNIRKVEIQGHTDNT---GGREHNQTLSEARANAVRAWLIRAGV 947 Query: 305 SEDRISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDR 341 R+ G+ R + P N + NRR+ ++ ++ Sbjct: 948 DGSRLLA-KGYGQDRPVAPNVTPANKAKNRRVQFIIVEK 985 >gi|302035624|ref|YP_003795946.1| hypothetical protein NIDE0237 [Candidatus Nitrospira defluvii] gi|300603688|emb|CBK40019.1| exported protein of unknown function [Candidatus Nitrospira defluvii] Length = 513 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 10/127 (7%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPF----R 278 I++ D + +D P + +L+++ E L + + + GH+D + Sbjct: 309 RINLDDLADQLEYDSGEVKVKPAGVPILEQLAEYLRTAAGSQQVRVEGHSDNMEIGPSLK 368 Query: 279 NIARDNWRLSLDRAY-SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 + NW LS RA ++ K G+ ++S + G+ R + + NRRI+ Sbjct: 369 GVFPTNWELSKARAAEIVRYLIEKGGMDSAKLSAV-GYGASRPVAGNGTEEGRKKNRRIE 427 Query: 336 ILVEDRQ 342 ++++ + Sbjct: 428 VVLDSPE 434 >gi|187477259|ref|YP_785283.1| hypothetical protein BAV0750 [Bordetella avium 197N] gi|115421845|emb|CAJ48363.1| probable outer membrane protein [Bordetella avium 197N] Length = 216 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246 ++S L V + + ET + ++++D R + +F +S P Sbjct: 43 QLSVKLDEEVKERQAETQRRETLEQALAVPLAGGRVTLVDGRIGISGSVLFALNSDQLQP 102 Query: 247 ETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E +L + E L E++ + G TD R DNW LS RA + + L Sbjct: 103 EGRELLMSLAEPLKTYLQSRDEILMVSGFTDNQRVSEHNRRFSDNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 + +G+ + + F + ++D + NRR++I RQ Sbjct: 163 IDAGIPASSLFAAA-FGSEQPVASNDDAEGQAKNRRVEIAPVPRQ 206 >gi|213025961|ref|ZP_03340408.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 65 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 34/65 (52%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 K++ GSWKI YADFMT +MAFFLVMW+I+ + I +YF + Sbjct: 1 KRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 60 Query: 78 TASKG 82 T G Sbjct: 61 TGEIG 65 >gi|325920257|ref|ZP_08182205.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] gi|325549250|gb|EGD20156.1| flagellar motor protein [Xanthomonas gardneri ATCC 19865] Length = 224 Score = 92.6 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++SS L V V+ +T + ++++D R +F +S P Sbjct: 43 QLSSRLDEEVKQRQVEAQRRKTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDQLQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + L E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKTLAAPLKEYLSSREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADETRRAKNRRVEI 200 >gi|84501356|ref|ZP_00999561.1| hypothetical protein OB2597_13363 [Oceanicola batsensis HTCC2597] gi|84390647|gb|EAQ03135.1| hypothetical protein OB2597_13363 [Oceanicola batsensis HTCC2597] Length = 350 Score = 92.6 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I+ + F SS + +L I ++++ I++ GHTD+ A Sbjct: 236 RFEILSRTGNIYFRPGSSRLDDASAPLLDSIYDIISRCPGLRIAVAGHTDSI---GSAAS 292 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 N LS RA S L G+ + R+ + G+ R + D S NRRI+ V Sbjct: 293 NQSLSERRASSVVDYLAAKGLGQGRMIAV-GYGEARPVADNGTDAGRSRNRRIEFSV 348 >gi|209519379|ref|ZP_03268177.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209500193|gb|EEA00251.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 217 Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +K+++ K + L+G +A T I I + Sbjct: 43 ELSSKLEQEVKQRQAETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S+ PE +L+ + L+ +++ + G TD R R DNW LS Sbjct: 93 FALNSAQLQPEGRALLKSLAGPLSAYLRASDQILMVSGFTDDQRLREGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ GV + + F + A +P + NRR++I Sbjct: 153 QRALTVTRALIDEGVPASSVFAAA-FGSEQPVSSNADEPGRAKNRRVEI 200 >gi|46580633|ref|YP_011441.1| motB protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602060|ref|YP_966460.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450052|gb|AAS96701.1| motB protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120562289|gb|ABM28033.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311234364|gb|ADP87218.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 244 Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 8/168 (4%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + ++ ++ L + ++ + + N V+GV+ G++ + + +F Sbjct: 77 EGALLETVRLQRELIEAQRQTYNEMRTYFTVNGVEGVIGAVFDEGVITLRV--PSEVLFA 134 Query: 239 KSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSA 295 + P VL + ++ + + I+I+G TD AR DNW +S R+ + Sbjct: 135 PGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNV 194 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 + + +G+ R++ +G + D + NRR++ ++E R Sbjct: 195 LRYFLGAGIEPARLTA-TGLGELDPLFPNTSDENRARNRRVEFVLERR 241 >gi|282880441|ref|ZP_06289148.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1] gi|281305544|gb|EFA97597.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1] Length = 298 Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ +S L KI ++ Sbjct: 133 LTNNLTRSLSREELKEVDVQVLKGVVYISLADNM---LYKTASYEINDRAAETLSKIAKI 189 Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + + G+TD P + R+NW LS RA S Q L K+ GV R++ Sbjct: 190 IMDYKEYDVLVEGNTDNVPVNPNSPLMKNIRNNWDLSTLRASSVVQYLQKNYGVDPKRMT 249 Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 G + +++ NRR I++ + Sbjct: 250 A-GGRGEYNPLTSNNTELGRQRNRRTQIIITPK 281 >gi|296536082|ref|ZP_06898216.1| OmpA family protein [Roseomonas cervicalis ATCC 49957] gi|296263579|gb|EFH10070.1| OmpA family protein [Roseomonas cervicalis ATCC 49957] Length = 235 Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 21/240 (8%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ + + E+ S Q +T+ + + + E+ +++ Sbjct: 5 TATEARRRAEAEGGEHARLAESARAQVALLTQQVTQLRAELSRIAALLEAEEQSGRDKEA 64 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 + L + A+ R+++L ++ S G + D + + Sbjct: 65 QISQLGQRLNAALA--ARVEEL-QRYRSDFFGRLRDVLGDRPEVRIVGDRFVFQ-----G 116 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--------ISIRGHTDASPFRNIAR--D 283 +F + L+ + +VL T + + GH D SP R AR Sbjct: 117 EVLFPVGGAELSAAGQQQLRALAQVLLEVTRRFPQDLAWILRVDGHADRSPLRAGARYAS 176 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVEDR 341 NW LS RA + Q L+ G+ +R++ + F ++ + D P + NRRI++ + DR Sbjct: 177 NWELSAARAIAVGQFLIGEGLPPNRVAA-TAFGEYQPIDSGDSPEAFARNRRIELRLTDR 235 >gi|325295240|ref|YP_004281754.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065688|gb|ADY73695.1| OmpA/MotB domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 251 Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%) Query: 192 LQDLAKKISSTLSGLVADN------------IVKGVLFETTRTGILISIIDQRNTPMFDK 239 L A +IS L DN I + + + ++ +++ +F Sbjct: 83 LDQQANQISKDLGVKPIDNTNPEAPQVTGAPITENKPVAVVKEPNRVRVV-LKDSVLFGF 141 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 +S PE L+++ L+ + + VI I G TD++ N RLS RA S Sbjct: 142 NSYQLKPEAKETLRRLARTLSQNPDTVIVISGFTDST---GSFDYNVRLSEKRAESVKNE 198 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L+ +GV RI + G + ++ + NRR++ILV + Sbjct: 199 LVLNGVDPTRIL-VFGCGPKKPIAPNNTPEGRALNRRVEILVYPK 242 >gi|119953079|ref|YP_945288.1| flagellar motor protein MotB [Borrelia turicatae 91E135] gi|119861850|gb|AAX17618.1| chemotaxis MotB protein [Borrelia turicatae 91E135] Length = 262 Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 19/171 (11%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L K + A K + ++ + V+ G+++S++ FD +S+ Sbjct: 85 LPSTEKNKQASQASK-NKSIIEFIEKIQSNRVIVRHYERGVVVSLLAD---AFFDSASAE 140 Query: 244 PL-PETIVVLQKIGEVLAHSTEV---ISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQ 297 + +QKI + I GHTD I + NW LS RA + + Sbjct: 141 VKLDDNRETIQKIASFIGFLDNQGYNFKIEGHTDNVDVNINGIWKSNWELSSARAVNMLE 200 Query: 298 VLMKSGVSEDRISK------ISGFAHHRLKIASDP--MNSANRRIDILVED 340 ++ + +I +SGFA R D + NRRIDIL+ Sbjct: 201 QILNY-TDQSKIQSIESKFEVSGFAGSRPVATDDTPEGRAYNRRIDILITS 250 Score = 41.4 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIIN--ATDDDTKKAIEQYFNPFG 73 ++ + + + Y D +T+L+ FF+ M+ +N ++ K + F G Sbjct: 4 LRDRKKRSKCAEGTPEYMLTYGDMVTLLLVFFVTMFSLNDIILKENVLKIMSASFTGSG 62 >gi|166713623|ref|ZP_02244830.1| hypothetical protein Xoryp_19825 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 224 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++S+ L V + +T + ++++D R +F +S P Sbjct: 43 QLSNRLDEAVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + LA E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKSLAAPLAQYLRTREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200 >gi|158424220|ref|YP_001525512.1| OmpA family protein [Azorhizobium caulinodans ORS 571] gi|158331109|dbj|BAF88594.1| OmpA family protein [Azorhizobium caulinodans ORS 571] Length = 494 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 7/144 (4%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 +SG + + L G + I Q+ +F +S+ P V+ K+ LA Sbjct: 355 QVISGFLEPE-QQAKLITVFGRGNSVVIQTQQE--LFASASTTLRPPYPEVIAKVAAALA 411 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ G+TD P R DN LS RA + Q L RI+ + G Sbjct: 412 KFKGPVNVLGYTDNVPIRTATFPDNLALSTARARAVGQALAAGLGGNARITTV-GKGDAD 470 Query: 320 LKIASDP--MNSANRRIDILVEDR 341 ++D NRR++I++ + Sbjct: 471 PVASNDTPDGRQKNRRVEIVLTPQ 494 >gi|254438848|ref|ZP_05052342.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198254294|gb|EDY78608.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 743 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 21/238 (8%) Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 QR + + + E + + E D+ + +E L Sbjct: 510 SSDNQRQVALLNEQVAALRGEMGRLQALLNLENDADVMANVQIETLTQNLNTAMARALLA 569 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS--IIDQRNTPM 236 E+ + + L+ +A + + L +D +++ +L + G+ I + + Sbjct: 570 ERRARVLEEAELERMAAE-AVELERYRSDFLGLLRNILEDV--DGVRIQGDRFVFSSEVL 626 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNIAR--DNWR 286 F++ ++ E + K+ +L VI + GHTD P +NW Sbjct: 627 FEQGAAQLSGEGQREIAKVATILRDVAGDIPESIDWVIRVDGHTDNVPLSGAGEFANNWE 686 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 LS RA S ++ + +R++ +GF ++ ++ + NRRI++ + +R Sbjct: 687 LSQARALSVVLYMVNFLAIPPERLAA-NGFGQYQPINPANTTEARAQNRRIELKLTER 743 >gi|285019096|ref|YP_003376807.1| outer membrane protein [Xanthomonas albilineans GPE PC73] gi|283474314|emb|CBA16815.1| hypothetical outer membrane protein [Xanthomonas albilineans] Length = 216 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 14/130 (10%) Query: 225 LISIID----QRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVI-SIRGHTDASP 276 +++ID R +F +S P+ +L + LA + I + G TD Sbjct: 77 RVTLIDGRIGIRGNVLFALNSDQLQPQGRDLLDSLATPLAGYLKARNEILMVSGFTDDRQ 136 Query: 277 FRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331 R R DNW LS +RA + + L+ +GV D I + F + A D ++N Sbjct: 137 VRVGNRQFVDNWELSAERALTVTRALIDAGVPADAIFAAA-FGAQQPVASNADDAGRASN 195 Query: 332 RRIDILVEDR 341 RR+++ R Sbjct: 196 RRVEMAPLPR 205 >gi|304312414|ref|YP_003812012.1| Predicted OmpA family protein [gamma proteobacterium HdN1] gi|301798147|emb|CBL46369.1| Predicted OmpA family protein [gamma proteobacterium HdN1] Length = 244 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L + + +++ + + L +AD + G T I I + + Sbjct: 42 ELGRTLQTEITKRQAEEQQRVALEEALEIALADPLASG---RITLDRGRIGIS---GSVL 95 Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNWRLSL 289 F +S+ PE + +L+++ L E++ + G TD P + DNW LS Sbjct: 96 FALNSAELQPEGLALLREVSAPLRKYLEQRQELLMVSGFTDDLPIQKGNHSFTDNWALSA 155 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDI 336 +RA + + L+ +G+ + + A + SD + NRR++I Sbjct: 156 ERALTVTRALIDNGLPSTLVFAAAFGAEQPIASNSDAEGRAKNRRVEI 203 >gi|197122876|ref|YP_002134827.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|196172725|gb|ACG73698.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] Length = 259 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 8/169 (4%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGVLFETTRTGILISIIDQRNT 234 P + + + ++ L K+I + V + V V + + + Sbjct: 79 GPALEAGTSMRQEHRGIELLRKRIERRVRPFVMERRPVPVVSVLVEGRRLTVRLAATE-- 136 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRA 292 FD + P+ + +L I + + + GHTD +P + R NW LS RA Sbjct: 137 -FFDPGQAALRPQALALLDAIAAEVVPLERPLRVEGHTDETPVGSGGRWMSNWELSAARA 195 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 + L ++ + + G + NRR+++++E Sbjct: 196 ATVVGYLEQAHAARPALLAAVGLGSAHPLSTDATPEAHERNRRVELVLE 244 Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADFMT+L AFF+VM+ ++ D+ + T G + P Sbjct: 16 WLVSYADFMTLLFAFFVVMYAVSRVDNKRVVQATESIRWAMHFSGTGGTGALPLFDGPPS 75 Query: 93 SSQNK 97 Sbjct: 76 EGGGP 80 >gi|94986926|ref|YP_594859.1| flagellar motor protein [Lawsonia intracellularis PHE/MN1-00] gi|94731175|emb|CAJ54537.1| Flagellar motor protein [Lawsonia intracellularis PHE/MN1-00] Length = 237 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 9/202 (4%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + K L K+ D N + L ++ + ++ LA Sbjct: 27 AMTPPEVKEGLAAYFSSSDATFKTPDSSPISNNPLINQIDKLDTRQLKINETEQSHYALA 86 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+ L G+ + + + + F ++ PE V+ + Sbjct: 87 NKLKKMLMADAIPQSATGISADDVGVLLRV-----NSNSTFLPGTATLTPEGKKVMGTVL 141 Query: 257 EVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + IRGH D + NW LS RA +A Q L++ G+ RI + G Sbjct: 142 AVLREYNLYLVIRGHADIGEITKGSPFASNWELSGARAAAAAQYLVEHGIKASRIRSV-G 200 Query: 315 FAHHRLKIASDPMNS-ANRRID 335 +A R S P S NRRI+ Sbjct: 201 YADTRPLEPSSPEGSTKNRRIE 222 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 GSWK+ YADF+T +MAFFL+MWI+ T + K+ + YF+ T N P Sbjct: 3 GSWKVAYADFVTAMMAFFLLMWILAMTPPEVKEGLAAYFSSSDATFKTPDSSPI--SNNP 60 Query: 91 ERSSQNKID 99 + +K+D Sbjct: 61 LINQIDKLD 69 >gi|115378003|ref|ZP_01465184.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|115364980|gb|EAU64034.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] Length = 636 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 39/271 (14%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + GI D + S + + +R + + Sbjct: 397 SDGDGILDPDDK-CPSVPGVARFQGCPDTDGDGLVDPDDKCPSVPGVERFQGCPDTDGDG 455 Query: 138 QQSEHCK-NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + K S+ E K TD ++ + +N P ++ +L ++ Sbjct: 456 IEDASDKCPSVPGIHELKGCPPKDTDKDQLPDHRDNCPNEPGPAANQGCPVQQPQLVEIQ 515 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + I I D FD + LP + +L ++ Sbjct: 516 RD--------------------------RIEIKD---KVYFDSDKATILPRSNKLLDQVA 546 Query: 257 EVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 ++ E I I GHTD R N LS RA L+ GV R+ G Sbjct: 547 RIIIEHPELEKIWIEGHTDE---RGSQDYNRELSQKRAEEVRDYLVTRGVPIGRLVP-KG 602 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + ++D +ANRR++ L R+G Sbjct: 603 YGRQYPVASNDTVEGRAANRRVEFLTTPREG 633 >gi|238924159|ref|YP_002937675.1| hypothetical protein EUBREC_1797 [Eubacterium rectale ATCC 33656] gi|238875834|gb|ACR75541.1| hypothetical protein EUBREC_1797 [Eubacterium rectale ATCC 33656] Length = 275 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 105/327 (32%), Gaps = 69/327 (21%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K +D P +W+ ++D M +L+ FF++++ ++ D + + + L Sbjct: 3 KRRPEDPPKGAPAWQSTFSDLMNLLLCFFVLLFSMSTVDAEKFQLVIASLTSSVSVLPGG 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S I + + Sbjct: 63 STSI---------------------------------------------------GDGRL 71 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + L + DL S +S + ++ ++ L+ K ++++I Sbjct: 72 VGAGVSQLEFLDKYYNDLANSKSTTESTTEGDDKNAEEQYEQMELSESEK-----MSEQI 126 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L + E + + +F+ + + E V+ KI +L Sbjct: 127 EKQLENTSLQDA-----VEVDFNAQYVQLS-LNGALLFESGKADVMEEAYPVVNKISSIL 180 Query: 260 AH-STEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 A +I I GHTD P R+ N LS+ RA S + + ++ I SG Sbjct: 181 AAYQDNLIEIEGHTDNVPVSSRSKYESNDVLSMYRALSVANYIRDNTSLNPAHIKS-SGR 239 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 + + + NRR++I V + Sbjct: 240 GDYDPVADNSTPEGRARNRRVEIKVYN 266 >gi|296156377|ref|ZP_06839215.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295892976|gb|EFG72756.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 215 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++++ + + L + TL +A + G + I I + Sbjct: 39 GVQLELSSKLEQEVKQRQLETQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ + E++ + G TD R R DNW LS Sbjct: 93 FALNSDQLQPQGRDLLKSLAGPLSAYLRANDEILMVSGFTDDQRLREGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 RA + + L+ GV + + G A + + NRR++I Sbjct: 153 QRALTVTRALIDDGVPASSLFAAAFGSGQPVSSNADEQGRAKNRRVEI 200 >gi|91779292|ref|YP_554500.1| hypothetical protein Bxe_B0804 [Burkholderia xenovorans LB400] gi|91691952|gb|ABE35150.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 215 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++++ + + L + TL +A + G + I I + Sbjct: 39 GVQLELSSKLEQEVKQRQLETQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ + E++ + G TD R R DNW LS Sbjct: 93 FALNSDQLQPQGRDLLKSLAGPLSAYLRANDEILMVSGFTDDQRLREGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 RA + + L+ GV + + G A + + NRR++I Sbjct: 153 QRALTVTRALIDDGVPASSLFAAAFGSGQPVSSNADEQGRARNRRVEI 200 >gi|332519379|ref|ZP_08395846.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045227|gb|EGI81420.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 476 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 16/142 (11%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNT----PMFDKSSSIPLPETIVVLQKIGEVLA 260 G VA+N V+ + T+ +IDQ N+ +FD S +T VL+ I +L Sbjct: 343 GTVANNGCPEVVAQPTQE-----VIDQLNSYARTILFDTGKSSFKEQTKEVLKNITAILK 397 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + +I GHTD+ N +LS RA + L+ +G+S R+S GF Sbjct: 398 EYPDSNFTIEGHTDSV---GSKSSNQKLSERRANAVRDYLIANGISASRLSA-YGFGEDY 453 Query: 320 LKIASDPMNSA--NRRIDILVE 339 ++ N NRR +I ++ Sbjct: 454 PVDSNATRNGRKNNRRTEIKLK 475 >gi|197117412|ref|YP_002137839.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] gi|197086772|gb|ACH38043.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] Length = 228 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E R G + + + +FD PE L + L S I+I GHTD++ Sbjct: 97 EVVRDGDKV-YVALPSGILFDLGKDALKPEAKDALSRAAGTLKDSQTTITIEGHTDST-- 153 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 N LS RA L+ GV +++ I G+ R + + D + NRR+ Sbjct: 154 -GSNAVNQPLSERRANRVRDYLVSQGVPGAKMAAI-GYGSSRPAVPNDSDANRALNRRVQ 211 Query: 336 ILVEDRQ 342 I + + Sbjct: 212 IELTPNE 218 >gi|307718975|ref|YP_003874507.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM 6192] gi|306532700|gb|ADN02234.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM 6192] Length = 395 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 10/147 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +K+ + + D + ET+ G+ I + F S++ LPE L+KI Sbjct: 255 EKVREEVEAAIEDLQIPDAEVETSEEGVTIRL----ENIQFPPDSALLLPEEQEKLRKIA 310 Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 ++L+ E + + GHT LS++RA + LMK GV I G+ Sbjct: 311 QILSRYPERDLLVEGHT---ALAGTPEGRLALSIERAKAVADFLMKLGVRRPEQIVIRGY 367 Query: 316 AHHRLKIAS--DPMNSANRRIDILVED 340 R + + S NRR++I + + Sbjct: 368 GATRPIADNTTEEGRSRNRRVEITILE 394 >gi|124007829|ref|ZP_01692531.1| outer membrane protein [Microscilla marina ATCC 23134] gi|123986775|gb|EAY26556.1| outer membrane protein [Microscilla marina ATCC 23134] Length = 715 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G I + N FD S + L ++ + + + I + GHTDA Sbjct: 602 GQKIRL----NNLFFDVGKSALKSSSFAELNRLVNSMKNYPNMTIEVSGHTDAQ---GSP 654 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N +LS DRA + L G+ R+ + G+ + + + NRR++ ++ Sbjct: 655 AKNLQLSKDRANAVLNYLKSKGIPASRM-QAKGYGQTKPLATNGTAQGRARNRRVEFMIL 713 Query: 340 DR 341 + Sbjct: 714 KK 715 >gi|289662480|ref|ZP_06484061.1| hypothetical protein XcampvN_05177 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669716|ref|ZP_06490791.1| hypothetical protein XcampmN_14767 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 224 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++SS L V + +T + ++++D R +F +S P Sbjct: 43 QLSSRLDAEVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + LA E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKSLAAPLAQYLRAREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200 >gi|237803483|ref|ZP_04591068.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025465|gb|EGI05521.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 271 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 102/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLTSYLGSGADVSHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLVKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQT 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VL+ GV E RI ++ G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLIDLGVDEKRI-QVEGYGQQFPVDANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|332664040|ref|YP_004446828.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332854|gb|AEE49955.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 651 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ +S+ E+ L + ++L + I I GHTD DN RLS RA + Sbjct: 549 FFETASAALRQESGPELDHLADLLNQNPNLRIQINGHTDNV---GTDADNLRLSEQRAKA 605 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 Y L+ G++ +R+ GF + ++ NRR + +V Sbjct: 606 VYTYLVGKGIAAERL-AYKGFGETQPIADNNTEEGRKVNRRTEFVVL 651 >gi|134294581|ref|YP_001118316.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134137738|gb|ABO53481.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 319 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 22/278 (7%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 + ++ ++ + IT + G + Sbjct: 46 TVATTALPSTPNASAAPGAAPGTASGTVVHGTAGTITPPPANATPGQVVAGGKVPDEATK 105 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL------ 184 L + + N + + + D+ + ++ K L +SK ++ Sbjct: 106 AAVLQKLRDTYGAANVVDQI--EVGDVATPPNWSTNVQKLLGAQLKQISKGQLKINGTQI 163 Query: 185 ----AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + + Q LA ++++L+ I G+ + G+L + R F+ Sbjct: 164 EVKGEVHNEAQRQQLASDMANSLNPTYT--IKNGLRVSASEQGVLDQTLANRTIE-FETG 220 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ P+ +L ++ LA + I GHTD N LS RA + L Sbjct: 221 SATLTPQGKQILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYL 277 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + G+ +++ +G + +D + NRRI+ Sbjct: 278 ITKGIQPQQMT-TTGVGPDQPIAPNDTADGRARNRRIE 314 >gi|302187430|ref|ZP_07264103.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 271 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VLM GV E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|323697842|ref|ZP_08109754.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457774|gb|EGB13639.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 250 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 86/245 (35%), Gaps = 11/245 (4%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L K+ + +T + + + Sbjct: 7 LEQQGGGPKSDPPKPDEGIPPWMATFADMVTLLLCFFVLLLSFTNQDVTNFRKLMGSIQE 66 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + ++ ++ + ++ +++ +++ +L + + ++ K + Sbjct: 67 ALGVQYEDRSAQSVPYADTTFKERQSVRENRQIVELGVILKKAIRSKDLTHMAK---VSS 123 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA-SPFR 278 ++G+++ + Q +FDK S E LQ + + + + + IRGHTD +P Sbjct: 124 DKSGVMLRLSSQ---LLFDKGSVELTAEAKQALQMVIDSMKQTDFNLVIRGHTDGETPES 180 Query: 279 NIARDNWRLSLDRAYS-AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 NW LS RA S ++ S + R+ + G+ + + S+ ANRR++ Sbjct: 181 VQYGSNWSLSAARAASCLRYIIEHSDIPATRMKAV-GYGGSKPLLPGTSEENRQANRRVE 239 Query: 336 ILVED 340 Sbjct: 240 FFYMP 244 >gi|330875706|gb|EGH09855.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967020|gb|EGH67280.1| ompA family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 271 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 12/244 (4%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 30 QALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVSHYAYLSSRY 89 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRT 222 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 90 SEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTQTDR 149 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 150 GLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---GDR 202 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 +N LS DRA + VL GV E RI ++ G+ A+ + + NRR++I+ Sbjct: 203 EENLTLSKDRAQAVADVLTDLGVDEKRI-QVEGYGQQFPVDANASERGRAQNRRVEIVFS 261 Query: 340 DRQG 343 D +G Sbjct: 262 DEKG 265 >gi|108756980|ref|YP_628607.1| OmpA family protein [Myxococcus xanthus DK 1622] gi|108460860|gb|ABF86045.1| OmpA family protein [Myxococcus xanthus DK 1622] Length = 409 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 97/243 (39%), Gaps = 17/243 (6%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 +T+ ++ Q++Q++ + +S TR E+ + ++ + Sbjct: 153 VTQQQEAERMRMDAQRRQHEAEQLRRLAQQQEAESRRLAEKTTRLQEEAQRRARAESESR 212 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA--------DNIVKGVLF 217 + +E + L ++ + R++ ++L ++ + L ++ + V Sbjct: 213 RLAQENHELLQRSAELEAEQEARRQVERELERERQARLDAEQRATEALTQLESTARDVKV 272 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 G+++++ +F ++ LP L ++ L S + I GHTD+ Sbjct: 273 REEERGLVLTMS---GQVLFASNAVDLLPTAREQLTEVAHALKVSDSPMVIEGHTDSM-- 327 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA + L+ GVS DRI ++ G +R + + NRR++ Sbjct: 328 -GSDAMNEALSYRRAEHVREFLISQGVSRDRI-QVRGLGEYRPVANNSTPEGRANNRRVE 385 Query: 336 ILV 338 I++ Sbjct: 386 IIL 388 >gi|288925232|ref|ZP_06419167.1| OmpA family protein [Prevotella buccae D17] gi|288337997|gb|EFC76348.1| OmpA family protein [Prevotella buccae D17] Length = 284 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 14/153 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ S L KI ++ Sbjct: 121 LTNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAEETLSKIAKI 177 Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 + + I G+TD P + R+NW LS RA S Q L + GV R++ Sbjct: 178 IMDYKDYEVLIEGNTDNVPVNTDSPKMKNIRNNWDLSALRASSVVQYLQNRYGVDPKRLT 237 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 G + + NRR I++ + Sbjct: 238 A-GGRGEYNPVATNSTELGKQRNRRTQIIITPK 269 >gi|295699895|ref|YP_003607788.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295439108|gb|ADG18277.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 410 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 ++ + +FD + P T ++ + + AH + I + GHTD + N + Sbjct: 292 VVTLDSMSLFDSGRAQLKPGSTRAMVDALEMIKAHPDKRILVAGHTDNV---GNPQSNLK 348 Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS RA + L+ SG++E + I G+ R ASD + NRR++I + Sbjct: 349 LSTARAQAVRDWLIDVSGIAETQF-AIQGYGDTRPIASNASDDGRARNRRVEITLVP 404 >gi|42524415|ref|NP_969795.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100] gi|39576624|emb|CAE80788.1| flagellar motor protein MotB [Bdellovibrio bacteriovorus HD100] Length = 319 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 20/159 (12%) Query: 199 ISSTLSGLVADNIVKGVL--------FETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 I + L+A+ + +L E + G ++ +FD + Sbjct: 70 IKEVSAALLAEQKIMNILKGSGDLNGVEIIKDGNNTLLLKFDGEVLFDSGAVEVKETAKP 129 Query: 251 VLQKIGEVLAHS--TEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSED 307 L+++ L I++ GHTD+ ++ + NW LS RA S + +SGV Sbjct: 130 NLRRVVSALRSIEGVNKIAVEGHTDSDAIQSGLVKSNWELSSLRASSVVRYFEESGVDS- 188 Query: 308 RISKISGFAHHRLKIASDPMNSA--------NRRIDILV 338 ++ +GF NRR+ + V Sbjct: 189 KLLSAAGFGSSHPLAPEVDKAGVSIPANKVLNRRVVVAV 227 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDT----KKAIEQYF 69 + + ++ +W + YAD MT+L FF++M+ ++ D+ +K + +YF Sbjct: 13 EEHEHEMAHDESNWLVSYADMMTLLFGFFVLMYSMSRFDNTKFDLVRKEVAKYF 66 >gi|66045239|ref|YP_235080.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63255946|gb|AAY37042.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 271 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VLM G+ E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGIDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|319952835|ref|YP_004164102.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319421495|gb|ADV48604.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 448 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 28/270 (10%) Query: 78 TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131 T GI+D+ + PE + + D +K++ + GS + + Sbjct: 192 TDGDGIYDKDDACPEVAGLEAFNGCPDADGDGIEDSKDACPNEAGSKEMNGCPDADGDGV 251 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189 ++ +E +L + D D E N P L K+ + + Sbjct: 252 ADKDDACPNEAGTAALKGCPDADGDGVADKDDECPAEAGPASNKGCPFLDKDGDGVLDKD 311 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 D+A +++ V + K + D T +FD S + Sbjct: 312 DMCPDVAGTVANKGCPEVTAEVQK-------------QLNDYARTILFDTGKSSIKAAST 358 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 V+ I +L ++ GHTD+ A+ N LS RA S + L++ G+ E R Sbjct: 359 SVMVDIITILKEYPNAKFTVEGHTDSV---GSAKLNQSLSESRALSVKEFLVEKGIEEFR 415 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336 +S I G+ + ++ NRR++I Sbjct: 416 LSAI-GYGEEKPIASNSTRAGRTQNRRVEI 444 >gi|254525016|ref|ZP_05137071.1| OmpA family protein [Stenotrophomonas sp. SKA14] gi|219722607|gb|EED41132.1| OmpA family protein [Stenotrophomonas sp. SKA14] Length = 212 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246 ++S L V + +T + +++ID R + +F +S P Sbjct: 43 ELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLIDGRIGISGSVLFALNSDQLQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E +L+ + LA E++ + G TD +P R R DNW LS R+ + + L Sbjct: 103 EGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV D + + F + AS+ + NRR++I Sbjct: 163 IADGVPADAVFAAA-FGSEQPVSSNASEDGRARNRRVEI 200 >gi|213962352|ref|ZP_03390615.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena Capno] gi|213955018|gb|EEB66337.1| outer membrane protein OmpA family P60 [Capnocytophaga sputigena Capno] Length = 360 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 15/181 (8%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + EN + + + K +K KK + ++ + + E ++ Sbjct: 191 PLTARENPIVDHVERTKEPKVKEKKDRKRVS-------ANKAITRVETPEEREERTQRVV 243 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I T +FD S+ P+ +L I ++ + + + GHTD + N Sbjct: 244 KQINLYAKTILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNT---GTPEHN 300 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDR 341 +LS DRA + Q L + GVS+ R+ G+ R ++D NRR++I +++D+ Sbjct: 301 LKLSQDRADAIKQYLSRHGVSKKRLEA-KGYGQTRPIESNDTERGKEINRRVEINVIKDQ 359 Query: 342 Q 342 Q Sbjct: 360 Q 360 >gi|82701882|ref|YP_411448.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] gi|82409947|gb|ABB74056.1| OmpA/MotB [Nitrosospira multiformis ATCC 25196] Length = 225 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+++ +++ +G + + +T+ + + D + FD + P Sbjct: 77 RRMEEQKREMEQATAGTGVE------VVKTSDNRLRL---DIPSDISFDTGRADIRPNFR 127 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL L ++ ++I GHTD+S + LSL+RA S L GVS +R Sbjct: 128 PVLDSFATSLNNNPITEVTIIGHTDSSGSDAVNNP---LSLNRAASTRDYLASRGVSPNR 184 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + +I G +A+D + NRR++I V + + Sbjct: 185 V-RIEGRGSREPIVANDTPQNRARNRRVEIYVAEPK 219 >gi|297183087|gb|ADI19231.1| flagellar motor protein [uncultured delta proteobacterium HF0200_14D13] Length = 211 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 20/132 (15%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIAR- 282 I+ +F + I VL + + E +++ GH D P Sbjct: 65 IVSLPQDFLFRSGDAELKAGAIRVLTPFFQKIRDLPEHQGDLVTVEGHADNLPIHTDKYP 124 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA-SDP------------MN 328 NW LS RA + +L+ G + D ++G++ R K++ D Sbjct: 125 SNWELSTARATNVATMLINRMGYASD-TLSVNGYSDTRPKVSYKDARGNALRGTALEVAR 183 Query: 329 SANRRIDILVED 340 NRR++I++ Sbjct: 184 RTNRRVEIVITT 195 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 ++++ G+W I +AD MT++ FF+++ +++ + Sbjct: 1 MRRR-------EGGGAWVITFADLMTLMFCFFVLLTVLSTQPKN 37 >gi|218460723|ref|ZP_03500814.1| flagellar motor protein MotB [Rhizobium etli Kim 5] Length = 72 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 48/72 (66%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPF 72 TK A+ YFNP Sbjct: 61 TKAAVATYFNPI 72 >gi|330951673|gb|EGH51933.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 271 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 101/246 (41%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N LS DRA + VLM G+ E RI ++ G+ A+ + + NRR++I+ Sbjct: 201 DRQENLTLSKDRAQAVADVLMDLGIDEKRI-QVEGYGQEFPVNANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|325275390|ref|ZP_08141334.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] gi|324099474|gb|EGB97376.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] Length = 270 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 110/256 (42%), Gaps = 26/256 (10%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 E++S + D + +++ I + + +RL + I S+ + + + Sbjct: 32 EQASAAFQKVKDDSDVLRSAPRDVIRAGESLARAERLSSYIGTGSDVRHYAYLSQRYSEI 91 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + + L + + + ++ E L + K+ +++++ K + + ++ L ++ Sbjct: 92 AGEHAKLALNQERQAKLDLERQRLQLALREAKLASVQQQ------GKWVEAQIAALASEQ 145 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIR 269 G+++++ D +FD S+ + K+ + L + + I Sbjct: 146 A---------DRGLVMTLGD----VLFDTGSANLKNTASRTVLKLVQFLQLNPHRVVRIE 192 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 G+TD++ +N +LS DRA S +L+ GV E R+ ++ G+ AS+ Sbjct: 193 GYTDST---GTPEENLKLSHDRAQSVADMLVDLGVDEKRL-QVEGYGDQYPIEANASERG 248 Query: 328 NSANRRIDILVEDRQG 343 + NRR++I+ D +G Sbjct: 249 RAQNRRVEIVFSDDKG 264 >gi|258405399|ref|YP_003198141.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797626|gb|ACV68563.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692] Length = 227 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 13/202 (6%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + L ++I K+ L +L R+ + Sbjct: 23 TAPNQQQRGTAIGTAAGAGVGAILGQAIGKDTKGTLIGAGIGAVLGGIAGNRVGAYMDRQ 82 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L +A V E I + +FD S+ P + L + V Sbjct: 83 EQELRNALAQERAASVRREQD-----ILRATFDSNVLFDFDSARVKPGGVSELNRAASVF 137 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I + GHTDA N LS RA + VL++ GV R+S + G+ Sbjct: 138 NRYPQTRIRVEGHTDA---SGSEEYNMDLSRRRAQAVKDVLVQQGVDPRRVSTV-GYGET 193 Query: 319 RLKIASDPMNSANRRIDILVED 340 + ++SDP +ANRR+++++E Sbjct: 194 QP-VSSDP--AANRRVEVVIEP 212 >gi|104782672|ref|YP_609170.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95111659|emb|CAK16380.1| putative outer membrane protein; OmpA family [Pseudomonas entomophila L48] Length = 269 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 17/177 (9%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 +E L ++++ R+ +L + ++ + +VA + E T G+++++ Sbjct: 101 QERLAKLDLERQRLQLGLREAKLASVQQQGKWVEAQIVA------LASEQTDRGLVMTLG 154 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLS 288 D +FD + K+ + L + + I G+TD++ DN +LS Sbjct: 155 D----VLFDTGEADLKNSASRTALKLVQFLQLNPRRVVRIEGYTDST---GNPEDNLKLS 207 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 DRA + +L+ GV E RI ++ G+ AS+ + NRR++I+ D +G Sbjct: 208 RDRAQAVADMLVDLGVDEKRI-QVEGYGDQYPVEANASERGRAQNRRVEIVFSDDKG 263 >gi|206558755|ref|YP_002229515.1| putative outer membrane protein [Burkholderia cenocepacia J2315] gi|198034792|emb|CAR50659.1| putative outer membrane protein [Burkholderia cenocepacia J2315] Length = 316 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 93/269 (34%), Gaps = 18/269 (6%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T + + NP + + +T + G + L Sbjct: 50 TVATTALPQANPNAGGASGTVVHGTAGTLTPPPANAAPGQVVVGGKVPDEATKAAVLQKL 109 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192 + + N + + + D+ + ++ K L +SK ++ + + Sbjct: 110 RDTYGATNVVDQI--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167 Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++++S ++ + I G+ + G+L + R F+ S+ P+ Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++L ++ LA + I GHTD N LS RA + L+ + + Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQ 283 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRID 335 ++ +G + +D + NRRI+ Sbjct: 284 MT-TTGVGPDQPIAPNDTADGRARNRRIE 311 >gi|311106822|ref|YP_003979675.1| OmpA family protein 2 [Achromobacter xylosoxidans A8] gi|310761511|gb|ADP16960.1| OmpA family protein 2 [Achromobacter xylosoxidans A8] Length = 216 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSIPLP 246 ++S+ L V V+ ET + +++ID R + +F +S P Sbjct: 43 QLSTQLEEEVKQRQVETQRRETLEQALAGPLAAGRVTLIDGRIGISGSVLFALNSDQLQP 102 Query: 247 ETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + E L E++ + G+TD R R DNW LS RA + + L Sbjct: 103 EGREVLKSLIEPLSAYLKSHNEILMVSGYTDDQQVREGNRRFADNWDLSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 + GV + + F + A+ + + NRR++I Sbjct: 163 IDEGVPSSAVFAAA-FGSEQPVAANTDEEGRAKNRRVEI 200 >gi|170703211|ref|ZP_02894016.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170131877|gb|EDT00400.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 214 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + LA E++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPEGRDLLKTLAGPLAAYLKTRDEILMVSGFADDQQVRAGNRKFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|315607338|ref|ZP_07882338.1| OmpA family protein [Prevotella buccae ATCC 33574] gi|315251041|gb|EFU31030.1| OmpA family protein [Prevotella buccae ATCC 33574] Length = 284 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 14/153 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + + IS+ D ++ S L KI ++ Sbjct: 121 LTNNLTRSLSKEELKEVDVQVLKGVVYISLADNM---LYKSGSYEINDRAEETLSKIAKI 177 Query: 259 LAHS-TEVISIRGHTDASPFRNIA------RDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 + + I G+TD P + R+NW LS RA S Q L + GV R++ Sbjct: 178 IMDYKDYEVLIEGNTDNVPVNTDSPKMKNIRNNWDLSALRASSVVQYLQNRYGVDPKRLT 237 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 G + + NRR I++ + Sbjct: 238 A-GGRGEYNPVATNSTELGKQRNRRTQIIITPK 269 >gi|254246487|ref|ZP_04939808.1| OmpA/MotB [Burkholderia cenocepacia PC184] gi|124871263|gb|EAY62979.1| OmpA/MotB [Burkholderia cenocepacia PC184] Length = 316 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T + + NP + + I + G + L Sbjct: 50 TVATTALPQANPNAGGASGTVVHGTAGSIAPPPANATPGQVVVGGKVPDEATKAAVLQKL 109 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192 + + N + + + D+ + ++ K L +SK ++ + + Sbjct: 110 RDTYGATNVVDQV--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167 Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++++S ++ + I G+ + G+L + R F+ S+ P+ Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++L ++ LA + I GHTD N LS RA + L+ + + Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKNIPPQQ 283 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRID 335 ++ +G + +D + NRRI+ Sbjct: 284 MT-TTGVGPDQPIAPNDTADGRARNRRIE 311 >gi|308274998|emb|CBX31597.1| hypothetical protein N47_E51090 [uncultured Desulfobacterium sp.] Length = 315 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 13/224 (5%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + ++ + N I S S +++ +++ + + + Sbjct: 96 EVERLNQERNRILMESRSLEAKQANIKADASTKEANQAKMMAIEKAQQLEIKQQEALEQM 155 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 K+ LA + + + A++ + L A+ + + + T GI++++ D +F Sbjct: 156 KKLELAKQESQAMSLEAEQARKKAAELKAE--IDKLQAKQTDRGIVLTLGD----VLFAN 209 Query: 240 SSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + + P + + ++ E L H+ ++ I GHTD+ R N LS RA + Sbjct: 210 NKANLQPGAMRTIDQLAEFLKKHAERMVVIEGHTDS---RGSDTYNLGLSQRRADAVRDA 266 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+ G+ + RI I G ++D NRR++I++ + Sbjct: 267 LVARGIDQARIQTI-GKGEVYPVASNDTSAGRQQNRRVEIIISN 309 >gi|170731810|ref|YP_001763757.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169815052|gb|ACA89635.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 316 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T + + NP + + I + G + L Sbjct: 50 TVATTALPQANPNAGGASGTVVHGTAGTIAPPPANATPGQVVVGGKVPDEATKAAVLQKL 109 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192 + + N + + + D+ + ++ K L +SK ++ + + Sbjct: 110 RDTYGATNVVDQV--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167 Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++++S ++ + I G+ + G+L + R F+ S+ P+ Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++L ++ LA + I GHTD N LS RA + L+ + + Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKNIPPQQ 283 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRID 335 ++ +G + +D + NRRI+ Sbjct: 284 MT-TTGVGPDQPIAPNDTADGRARNRRIE 311 >gi|323528476|ref|YP_004230628.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323385478|gb|ADX57568.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 217 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++++ + + L + TL +A + G + I I + Sbjct: 42 GVQLELSNKLEQEVKQRQLETQRRKTLEEALAGPLAAGRVTLVNG---RIGIS---GNVL 95 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ + +++ + G TD R R DNW LS Sbjct: 96 FALNSDQLQPQGRDLLKSLAGPLSAYLRANDQLLMVSGFTDDQRLREGNRRFADNWELSA 155 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 RA + + L+ +GV + + G A A + + NRR++I Sbjct: 156 QRALTVTRALIDAGVPASSVFAAAFGSAQPVSSNADEQGRARNRRVEI 203 >gi|270047795|pdb|3KHN|A Chain A, Crystal Structure Of Putative Motb Like Protein Dvu_2228 From Desulfovibrio Vulgaris. gi|270047796|pdb|3KHN|B Chain B, Crystal Structure Of Putative Motb Like Protein Dvu_2228 From Desulfovibrio Vulgaris Length = 174 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 71/165 (43%), Gaps = 8/165 (4%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + ++ ++ L + ++ + N V+GV+ G++ + + +F + Sbjct: 2 SLETVRLQRELIEAQRQTYNEXRTYFTVNGVEGVIGAVFDEGVITLRV--PSEVLFAPGA 59 Query: 242 SIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQV 298 P VL + ++ + + I+I+G TD AR DNW +S R+ + + Sbjct: 60 VELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRY 119 Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 + +G+ R++ +G + D + NRR++ ++E R Sbjct: 120 FLGAGIEPARLTA-TGLGELDPLFPNTSDENRARNRRVEFVLERR 163 >gi|332291485|ref|YP_004430094.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169571|gb|AEE18826.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 293 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 19/236 (8%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 +K++ + I + ++ T + + K EN + Sbjct: 49 EKEEIEAKYAAIEQRVDDYNTKINSLRDTNVDLQASNDAKFEITTNGTVMSENTKQKLRA 108 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV---------LFETTRTGILISIID 230 + + Q L ++ +S + N+ K + + T + ISI D Sbjct: 109 ALANVDPSELAQAQTLEDSMNLAVSHKLKRNLNKDIYGANALDDINIDIDDTVVQISISD 168 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR--DNWRL 287 + +F S E +L++I V+ + + GHTD+ + + DNW L Sbjct: 169 KM---LFRSGSYRVSKEADALLRRIAAVVNSEPAVEVMVEGHTDSRTVKKGSYLKDNWDL 225 Query: 288 SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 S+ RA + + L K V ++ SG + + + +D S NRR IL+ Sbjct: 226 SVQRATAIVRELQTKHNVDPSKLIA-SGRSSYVPLVENDSKENMSRNRRTRILILP 280 >gi|218516717|ref|ZP_03513557.1| flagellar motor protein MotB [Rhizobium etli 8C-3] Length = 89 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 48/73 (65%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 M+ + + ++ II+K+ D + G+WKI YADFMT +MAFFLVMW++NA +++ Sbjct: 1 MSEGENHHHGRNEIIIVKRHGGGDHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEE 60 Query: 61 TKKAIEQYFNPFG 73 TK A+ YFNP Sbjct: 61 TKAAVATYFNPIK 73 >gi|328946962|ref|YP_004364299.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489] gi|328447286|gb|AEB13002.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489] Length = 488 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 13/234 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 ++ S ++K+ + LE + S + + S+ ++ + S K Sbjct: 265 PALQRVASVSEKEIKEILEKPVNESSWIESEKKSSGSIEKNDF--ESGANSRRNNSYAEK 322 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + K K+K ++ KIS+ + K V+ E T GI +++ Sbjct: 323 KIAKNENQTYGAKNHPQKKKDSADEIQSKISAGKNSSSNSKSEKKVIVENTAAGIRLTMQ 382 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLS 288 + F SS LP L +I +VL + + + GHT + + +LS Sbjct: 383 NLN----FKPDSSELLPGENERLDQIAQVLKEVPDQMFLVEGHTASVGYEKGEM---KLS 435 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 ++RA S L++ G+ ++ G + + + NRR++I + + Sbjct: 436 VERANSVANALIQRGIPREKFI-CKGSGGTKPIADNSTPEGKAKNRRVEITILE 488 >gi|238783322|ref|ZP_04627346.1| hypothetical protein yberc0001_32980 [Yersinia bercovieri ATCC 43970] gi|238715745|gb|EEQ07733.1| hypothetical protein yberc0001_32980 [Yersinia bercovieri ATCC 43970] Length = 403 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 6/141 (4%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L+ + + I G++ T S+I R +FD P V+ IG L Sbjct: 252 NLANFLQEEIASGMVVVRTDDKQ--SVIALRGDGLFDSGMITIRPAYNQVINHIGNALNG 309 Query: 262 STEVISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I + G++D P R + N LSL RA + L K + + K G Sbjct: 310 VSGKIMVTGYSDNVPIRKSTFTSNSALSLARANAVGSQLQKY-LDSAQRVKTEGRGEANP 368 Query: 321 KIASDPM--NSANRRIDILVE 339 +D + NRR++I + Sbjct: 369 VAPNDSKKDRALNRRVEITLL 389 >gi|296159938|ref|ZP_06842759.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295889921|gb|EFG69718.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 318 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 87/272 (31%), Gaps = 12/272 (4%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + G + +I + K + + Sbjct: 47 PPASSAPVGNAGPAVNTAGLASGTTGAGTGAITAAPPPANATPGQVVVGGKVPDEATKAA 106 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + ++ S +++K I + K + K Sbjct: 107 VLARLRDTYGAANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKG 166 Query: 191 RL--QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + + ++++S ++ + I G+ + G+L + R F+ S+ P Sbjct: 167 EVHNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTP 225 Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +L ++ + T ++I GHTD N LS RA + L+ G+ Sbjct: 226 QGRAILDQMAAAMMKMTNKTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKGIP 282 Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRID 335 +++ +G + ++D + NRRI+ Sbjct: 283 PQQMT-TTGVGPDQPIASNDTTDGRARNRRIE 313 >gi|170696413|ref|ZP_02887541.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170138674|gb|EDT06874.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 322 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 91/272 (33%), Gaps = 12/272 (4%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + S G + ++ + K + + Sbjct: 51 PSPSSTTAGSAGPAVNTAGLASGTTGAGTGAVTASPPPANAAPGQVVVGGKVPDEATKAA 110 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK--EKILAMKR 188 + ++ S +++K I + K + +K Sbjct: 111 VLARLRDTYGSANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKG 170 Query: 189 KKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + R + ++++S ++ + I G+ + G+L + R F+ S+ P Sbjct: 171 EVRNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTP 229 Query: 247 ETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +L ++ +L +T+ ++I GHTD N LS RA + L+ G+ Sbjct: 230 QGRAILDQMAAAMLKMATKTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKGIP 286 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++ +G + ++D + NRRI+ Sbjct: 287 PQQM-STTGVGPDQPIASNDTADGRARNRRIE 317 >gi|238026069|ref|YP_002910300.1| OmpA/MotB [Burkholderia glumae BGR1] gi|237875263|gb|ACR27596.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 355 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 93/276 (33%), Gaps = 16/276 (5%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + + + N + + + + + Sbjct: 80 PQAEGGTSQNGTVLTGTNVAGGTGAGPVTGAGTGATVSVPPQASATPGQVVVGGKVPDEA 139 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI------L 184 + + D + D+ + ++ K L +SK ++ + Sbjct: 140 TKAAVLQKLRDTYGAGNVVDQIEVGDVATPPNWSSNVQKLIGPQLKQISKGQLRIDGTSI 199 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 +K + R + L ++++S ++ + I + + G+L + R F+ S+ Sbjct: 200 DVKGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQGLLDQTLANRTIE-FETGSA 258 Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 P+ +L ++ ++ ++I GHTD N LS RA + L+ Sbjct: 259 TLTPQGRAILDQMAAAMSRMANRSVAIIGHTDN---SGNRASNIALSQARADAVKGYLVA 315 Query: 302 SGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 G+ ++ +G + ++D + NRRI+ Sbjct: 316 KGIPSQQL-STTGVGPDQPIASNDTAEGRARNRRIE 350 >gi|332528097|ref|ZP_08404128.1| hypothetical protein RBXJA2T_19116 [Rubrivivax benzoatilyticus JA2] gi|332112668|gb|EGJ12461.1| hypothetical protein RBXJA2T_19116 [Rubrivivax benzoatilyticus JA2] Length = 215 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 19/176 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L++ +++++ + + L+ +A T G I I + Sbjct: 45 DLAERLRAEVQQRQAEAQRREALEHALAVPLAAG-------RVTLAGGRIGIS---GNVL 94 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR----DNWRLS 288 F +S+ PE +L+ + LA EV+ + G TD R+ R DNW LS Sbjct: 95 FAFNSAELQPEGRQLLKSLAGPLAAYLSARDEVLMVSGFTDDRQVRDGGRARFADNWELS 154 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSANRRIDILVEDRQG 343 RA + + L++ GV + + A + +D + NRR++I R+ Sbjct: 155 AQRALTVTRALIEDGVPSSAVFAAAFGAEQPVASNADAAGRALNRRVEIAPTPRRA 210 >gi|258647767|ref|ZP_05735236.1| OmpA family protein [Prevotella tannerae ATCC 51259] gi|260852625|gb|EEX72494.1| OmpA family protein [Prevotella tannerae ATCC 51259] Length = 288 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 97/247 (39%), Gaps = 16/247 (6%) Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 T + + + N++ + Q E N + + + + + + L S D Sbjct: 28 TLRNENAALRQANEEGRIQLAECNANTDNLRNRLSDEQRRVDDLRKDYQLLQGSLDKSLQ 87 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKK-------ISSTLSGLVADNIVKGVLFET 219 N + + + L E + + K+L + K +++ L+ ++++ ++ V + Sbjct: 88 QNSQGSINISKLVDEINASNRFIKQLVEAKSKSDSLNMVLTNNLTRSLSNDELREVDVKV 147 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPF- 277 + + IS+ D ++ S L KI +++ + + G+TD P Sbjct: 148 LKGVVYISLADNM---LYKSGSYEINSRAKETLSKIAKIIKDYRDYDVLVEGNTDPVPIT 204 Query: 278 RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 R R+NW LS RA S L GV+ R++ +G + ++ NRR Sbjct: 205 RTNIRNNWDLSCLRASSVVLALQNDYGVNPARLTA-AGRGEYNPVTTNETEVGKQRNRRT 263 Query: 335 DILVEDR 341 I++ + Sbjct: 264 QIIITPK 270 >gi|51598540|ref|YP_072728.1| flagellar motor protein MotB [Borrelia garinii PBi] gi|51573111|gb|AAU07136.1| flagellar motor rotation protein B [Borrelia garinii PBi] Length = 260 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 18/166 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIMVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 + +QKI VL+ I GHTD + + NW LS R+ + + Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202 Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V+ + ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSNVNSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73 + + + Y D +T+L+ FF+ M+ +N ++ + + F G Sbjct: 4 RVKKPSKCDEGTPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60 >gi|242309734|ref|ZP_04808889.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489] gi|239523735|gb|EEQ63601.1| chemotaxis protein motB [Helicobacter pullorum MIT 98-5489] Length = 258 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 12/192 (6%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G LEK + + N P + I A + ++ + + + + Sbjct: 52 GSLEGSFAVLEKGLRTQINPPQP-IQATPIQAETEMDNVMNIFASLITEYNEINKLANGP 110 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIR--G 270 V FE GI+I I +F+ S+ I L++I L H + I I+ G Sbjct: 111 AVEFEEAEKGIIIRI---PEDLLFESGSATLSNSNGITFLKRISLELNHLPKEILIKAIG 167 Query: 271 HTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326 HTD +P + DN LS+ R + +L+ G+ ++RI G +D Sbjct: 168 HTDNTPMKKNATFADNLELSIARGVNVANLLISQGIDKERIIG-GGEGEFSPIANNDIPE 226 Query: 327 MNSANRRIDILV 338 + + NRR+D+ V Sbjct: 227 LRAKNRRVDLYV 238 >gi|260898695|ref|ZP_05907191.1| flagellar motor protein MotB [Vibrio parahaemolyticus Peru-466] gi|308086893|gb|EFO36588.1| flagellar motor protein MotB [Vibrio parahaemolyticus Peru-466] Length = 155 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGK 74 D P L W +AD M++LM FF+++ + D K I N Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDE--HITKNSVDLKIGSTNQKKQYQRLENNIF 132 + I ++ P R ID+ + + IT+ +++ G +++ +R E + Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126 Query: 133 YLSNSQQSEHCKNSLTRD 150 + + S S D Sbjct: 127 GGQSPETSTQSNQSAESD 144 >gi|152984892|ref|YP_001347626.1| outer membrane protein [Pseudomonas aeruginosa PA7] gi|150960050|gb|ABR82075.1| probable outer membrane protein [Pseudomonas aeruginosa PA7] Length = 269 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + + L +R + AK +S G + + E T Sbjct: 88 SEIARQHAQLNLNQERLVRLQLERERLQLALREAKLLSVQEQGQRLSEEIASLSTEETER 147 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G+++++ D +FD + + P K+ + L + I I G+TD+ Sbjct: 148 GLVLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDR 200 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 + N LS RA + VL GV R+ +++G+ AS+ + NRR++I+ Sbjct: 201 QANLDLSRARAQAVADVLADLGVDPARM-QVAGYGEAFPVTDNASNRGRAQNRRVEIVFS 259 Query: 340 DRQG 343 + +G Sbjct: 260 NDKG 263 >gi|66770081|ref|YP_244843.1| hypothetical protein XC_3783 [Xanthomonas campestris pv. campestris str. 8004] gi|77747955|ref|NP_639058.2| hypothetical protein XCC3712 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188993294|ref|YP_001905304.1| hypothetical protein xccb100_3899 [Xanthomonas campestris pv. campestris str. B100] gi|66575413|gb|AAY50823.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167735054|emb|CAP53266.1| OmpA family protein [Xanthomonas campestris pv. campestris] Length = 215 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ K + L+ +A T I I R + + Sbjct: 43 QLSSRLDDEVKQRQAEAQRRKTLEQALAAPLAAG-------RVTLVNGRIGI---RGSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE VL+ + L+ E++ I G TD P + R DNW LS Sbjct: 93 FALNSDQLQPEGREVLKSLAAPLSEYLVSREEILMISGFTDDRPVLDSNRRYADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ GV + + F + A + + NRR++I Sbjct: 153 QRALTVTRALIAEGVPASSVFAAA-FGSQQPVDSNADETRRAKNRRVEI 200 >gi|323700140|ref|ZP_08112052.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323460072|gb|EGB15937.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 273 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 17/154 (11%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L +N+ + + F ++R + I+ + +F PE L + +L Sbjct: 86 EPLQSLKWENVSQDINFSSSRF---VQILSINASLLFGPDGYTLSPEGRATLDRFLPLLE 142 Query: 261 HSTEVISIRGHTDA---------SPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRI 309 + + GHT P + + W+LSL+R + Y+ L+ G+S D + Sbjct: 143 QVKYPLLLAGHTSDLRDELGMNYQPGDDSRNPDLSWKLSLNRTLAIYRYLLDKGMSPD-M 201 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++ GF +R D + NRR+DI+++ R Sbjct: 202 LRVEGFGKYRPHYPPDTPENRARNRRVDIVLDKR 235 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKNL 76 KKK + + W + +AD MT+++ FF+++ + D A+ FG N Sbjct: 3 KKKQKRNCEE--MPLWMVTFADCMTLMLTFFILLVSMATIDQRRKLVALGSIIGTFGFNQ 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHI 106 A F +++ + ID E + Sbjct: 61 --AGYDTFSQKDTKKTVEPGPIDTGDLEPL 88 >gi|298293019|ref|YP_003694958.1| OmpA/MotB domain protein [Starkeya novella DSM 506] gi|296929530|gb|ADH90339.1| OmpA/MotB domain protein [Starkeya novella DSM 506] Length = 344 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 108/277 (38%), Gaps = 28/277 (10%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D ++ + + L +++ ++ ++ + + Q+ + Sbjct: 76 DSESESQMGALRASLLRLEQERDALQAAATAVASPEEIAAAQARSADLARELGQEKDAAA 135 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + + + + + ++ ++ L + + + RL DL ++++ L+ Sbjct: 136 QAAAQIAILNQQIA-------ALRRQIAALEQALDISEQKDKESQSRLADLGRRLNVALA 188 Query: 205 GLVAD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 V + ++ +L + I+ ++ FD++S+ P+ + L K+ Sbjct: 189 QRVQELTRYRSEFFGRLRAILGDRPDVRIVGDRFVFQSEIFFDRASADLRPDAMPALDKL 248 Query: 256 GEVL--------AHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVLMKSGVSE 306 E L + + V+ + GHTD P + NW+LS R+ + Q L GVS Sbjct: 249 AEALVALEKEIPSDISWVLRVDGHTDNRPIATPLFPSNWQLSAARSIAVVQYLAGKGVSP 308 Query: 307 DRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 + +GF ++ SD + NRRI++ + +R Sbjct: 309 QHLVA-AGFGEYQPIDDADSDDARARNRRIELKLTER 344 >gi|217979014|ref|YP_002363161.1| type VI secretion system OmpA/MotB family protein [Methylocella silvestris BL2] gi|217504390|gb|ACK51799.1| type VI secretion system OmpA/MotB family protein [Methylocella silvestris BL2] Length = 493 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Query: 203 LSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + ++A NI G + + T I+I IID +F S L + ++ I L Sbjct: 354 VRNVLAPNIQSGALSVDATANQIVIRIID---RALFQPGKSTMLDDVKPLMMYIAMALDD 410 Query: 262 STEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + GH+D +P N N+ LSL+RA +L +S +R+ G Sbjct: 411 DRGAVKVIGHSDNTPISNARFASNFELSLERANVVGALLKQSLSHPERVE-TEGKGADAP 469 Query: 321 KIASDP--MNSANRRIDILV 338 +D + NRR++I+V Sbjct: 470 IAPNDTPEGRAKNRRVEIVV 489 >gi|330973477|gb|EGH73543.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 271 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 100/246 (40%), Gaps = 12/246 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKTDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 ++N +LS DRA + VLM G+ E RI + G+ A+ + + NRR++I+ Sbjct: 201 DRQENLKLSKDRAQAVADVLMDLGIDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIV 259 Query: 338 VEDRQG 343 D +G Sbjct: 260 FSDEKG 265 >gi|268679796|ref|YP_003304227.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617827|gb|ACZ12192.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 266 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 118/325 (36%), Gaps = 93/325 (28%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK W + YADF+++L+A F+ ++ + + + + KA+++ F Sbjct: 1 MGKKKCKPTECPAGEKWAVPYADFLSLLLALFIALYALASVNTEKMKALKEEF------- 53 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 I+D PE ++ + N+ Sbjct: 54 ----VKIYDYSAKPEETTP------------------------------VMNLNVKSGDA 79 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++ E K ++ S + +++ + + + ++ E L Sbjct: 80 GKEKEKDKGNVGGMSAQLEEIARMAQMIEKMSLGEGS---------------------LD 118 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +KI + L + E T ++ +F L++I Sbjct: 119 QKIDGAIFKLPTKMLFAPGSAEIT----------NSDSMLF--------------LKRIS 154 Query: 257 EVLAHST--EVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +++ + ++G TD +P + +DN LS RA + +VL+++G++++R+S Sbjct: 155 DIITMLPQNVDVVVKGFTDTTPPPRGSKYQDNLELSSARANAVIRVLIRNGIAKERLSS- 213 Query: 313 SGFAHHRLKIASDP--MNSANRRID 335 +G+ + ++D N R++ Sbjct: 214 AGYGDTKAIASNDTDEGREKNSRVE 238 >gi|115360144|ref|YP_777282.1| hypothetical protein Bamb_5401 [Burkholderia ambifaria AMMD] gi|115285432|gb|ABI90948.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 214 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + LA E++ I G D R R DNW LS Sbjct: 92 FALNSDQLQPDGRDLLKTLAGPLAAYLTTRDEILMISGFADDQQVRAGNRQFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|119385179|ref|YP_916235.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans PD1222] gi|119374946|gb|ABL70539.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222] Length = 463 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF-- 277 G+++ ++ + +F + + P +++ IG + AH +++ GHTD P Sbjct: 338 GLVVLVVRASDPEVFRSAKASLNPAYQPLVEAIGRTVVANAHRIGAVAVSGHTDNVPVQR 397 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 N N LS RA + Q L +GV + + G A + A+ + NRRI+ Sbjct: 398 SNPFASNQGLSEARAETVAQALAAAGVPAE-LISAEGRADSQPVGDNATRDGRAQNRRIE 456 Query: 336 ILVEDRQ 342 I +E RQ Sbjct: 457 IRIEKRQ 463 >gi|116327052|ref|YP_796772.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332289|ref|YP_802007.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119796|gb|ABJ77839.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125978|gb|ABJ77249.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 458 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 96/276 (34%), Gaps = 25/276 (9%) Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 +Y + +GI + R + + N Q Sbjct: 201 EYNYTLHYDSQMGQEGIPLKIYGFARGMVFFNRELGLPQYKRVQLTYTFIYANGTAQEMS 260 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + Y N + ++ K+ + K T +E ++++ P + Sbjct: 261 FDIHGVYNKNIKLTDSDKDKFAEEVRKILKGKLPTGIESGSEQKKSSNPPRETLSWPEEE 320 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + K + + + +SG V T GI IS+ N+ +FD +SS Sbjct: 321 ENKTKQETMK------VSGSP-------VEIRRTEEGIAISL----NSVLFDYNSSQLKD 363 Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304 E + L++I VL + I I GHTD N +LS +RA S + L G+ Sbjct: 364 EAKLELRRIASVLKKYGDREIRISGHTDN---SGGDEYNRKLSRERALSVLKELRDEQGL 420 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 E R+ G+ + + NRR+DI + Sbjct: 421 EEKRM-SYEGYGKSKPIADNSTAQGRQKNRRVDITI 455 >gi|309779564|ref|ZP_07674325.1| OmpA family protein [Ralstonia sp. 5_7_47FAA] gi|308921805|gb|EFP67441.1| OmpA family protein [Ralstonia sp. 5_7_47FAA] Length = 217 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 20/176 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +K+++ K + L+G +A T I I + Sbjct: 43 ELSSKLENEVKQREAEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGI---NGNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +++ + LA E++ + G +D R R DNW LS Sbjct: 93 FAINSDQLQPEGRALMKSLAGPLAAYLTSREEILMVSGFSDDQQVRAGNRLFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 RA + + L+ G+ + + F + A D + NRR++I RQ Sbjct: 153 KRALTVTRALIDEGIPASSVFAAA-FGSQQPVSSNADDVGRAKNRRVEIAPVPRQA 207 >gi|120435916|ref|YP_861602.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578066|emb|CAL66535.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 281 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 18/252 (7%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 +S +++ ST QK + ++ E Y ++ + + + + + Sbjct: 19 VSKKKYVALEGELNDTRSTLQKTRVEKEEIEEKYARIEERVADYNAKINSLRTENEGMME 78 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG----- 214 DL +N ++K +K K L+D I+ +S + NI +G Sbjct: 79 MNDLTVMSKNTKNKMKNTIAKMDPEKVKGAKTLED---SINLAVSYNLKQNISEGADEDD 135 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + T ++I++ D +F S E +L+K+ EV+ + I GHTD Sbjct: 136 IDISVDETVVMINVSD---KLLFGSGSYRVTGEAQPLLKKLAEVINSEPAMEVMIEGHTD 192 Query: 274 ASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMN 328 + DNW LS+ RA S +VL V ++ +G + ++ + ++ Sbjct: 193 DRTMVTESYLKDNWDLSVRRATSIVRVLQDKYNVEPSKLIA-AGRSSYQPLVENSNKDNM 251 Query: 329 SANRRIDILVED 340 + NRR I++ Sbjct: 252 AKNRRTRIVIIP 263 >gi|90420689|ref|ZP_01228595.1| outer membrane protein [Aurantimonas manganoxydans SI85-9A1] gi|90334980|gb|EAS48741.1| outer membrane protein [Aurantimonas manganoxydans SI85-9A1] Length = 220 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268 + ++G TR G I I++ + F S LP L + VL + I ++ Sbjct: 88 DQLRGTGVSVTRVGDRI-ILNMPSNITFPTDQSSILPAFYPTLNSVALVLKEYDKSIVNV 146 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM- 327 GHTD+ N+ LS RA S Q+L GV R++ GF + ++D Sbjct: 147 YGHTDSQ---GSDGYNFTLSQQRASSVSQLLASQGVDPRRLN-TQGFGESQPVASNDTES 202 Query: 328 -NSANRRIDILV 338 + NRR++I + Sbjct: 203 GRAQNRRVEIAI 214 >gi|325913887|ref|ZP_08176246.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] gi|325539962|gb|EGD11599.1| flagellar motor protein [Xanthomonas vesicatoria ATCC 35937] Length = 221 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++SS L V + +T + ++++D R +F +S P Sbjct: 43 QLSSRLDQEVKQRQAEAQRRKTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + LA E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKSLAAPLAQYLSAREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IADGVPAASVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200 >gi|253701833|ref|YP_003023022.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251776683|gb|ACT19264.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 228 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E R G + + + +FD + P+ L + L S I+I GHTD++ Sbjct: 97 EVVRDGDKV-YVALPSGILFDVGKDVLKPDAKDSLSRAAATLKDSQTTITIEGHTDST-- 153 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 N LS RA L+ GV +++ I G+ R + + D + NRR+ Sbjct: 154 -GSNAINQPLSERRANRVRDYLVSQGVPGAKMAAI-GYGSSRPAVPNDSDANRALNRRVQ 211 Query: 336 ILVEDRQ 342 I + + Sbjct: 212 IELTPNE 218 >gi|219684669|ref|ZP_03539612.1| flagellar motor apparatus [Borrelia garinii PBr] gi|219672031|gb|EED29085.1| flagellar motor apparatus [Borrelia garinii PBr] Length = 260 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIMVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 + +QKI VL+ I GHTD + + NW LS R+ + + Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202 Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V + ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSNVKSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73 + + + Y D +T+L+ FF+ M+ +N ++ + + F G Sbjct: 4 RVKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60 >gi|262198074|ref|YP_003269283.1| hypothetical protein Hoch_4901 [Haliangium ochraceum DSM 14365] gi|262081421|gb|ACY17390.1| Myxococcales GC_trans_RRR domain protein [Haliangium ochraceum DSM 14365] Length = 1987 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 19/271 (7%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G DE P+ + + + E + + K G ++ L + + Sbjct: 1689 DGYQDEDGVPDPDNDD-DGIPDTEEACPDEPENKNGYQDEDGCPDELPDTDGDGHVDRVD 1747 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEK-----SINKEENYFLPPLSKEKILAMKRKKRLQDL 195 E + D + +D C D ++ S +K N P ++ + + D Sbjct: 1748 ECPEQPEDMDGFEDEDGCPDEDNDEDGVVDSADKCPNEAGPVENRGCPDTDRDGDGVVDR 1807 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + + G + I+D F + ++ + +LQ + Sbjct: 1808 LDNCPDEAGSERNQGCKRRQRVRLS--GDRLEILD---RVYFRSNRAVLQRRSNPLLQNV 1862 Query: 256 GEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +VL E + + GHTD R N LS RA + L++ GV R++ + Sbjct: 1863 AQVLIAHPEIEHVRVEGHTDN---RGDPTYNMNLSQSRAEAVVAFLVQEGVEAKRLAAV- 1918 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 GF + + +ANRR++ + + Sbjct: 1919 GFGETQPLEDNKTRRGRAANRRVEFNILWDK 1949 >gi|83644388|ref|YP_432823.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83632431|gb|ABC28398.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 219 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G R G I+++ FD + L +G VL + +I + G Sbjct: 90 LEGTGVRVVRNGDEITLV-MPGNITFDTGRAEVKANFYDTLDSVGLVLKEFDKTIIQVSG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 HTD++ N RLS RA S + L+ GV R+ I G+ + Sbjct: 149 HTDST---GSLDLNQRLSEQRAGSVGRYLISQGVLSSRVQTI-GYGPRYPVATNSTTEGR 204 Query: 329 SANRRIDILVEDRQG 343 +ANRR+++ + QG Sbjct: 205 AANRRVELKLVPMQG 219 >gi|292490769|ref|YP_003526208.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291579364|gb|ADE13821.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 301 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE +L + + L + ++I GHTD+ N N RLS RA +A Sbjct: 199 FAFDSAKLTPEARDILDETADSLRTHPDLEVTIEGHTDS--VGNADY-NKRLSQLRAEAA 255 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L+ GV + R+ + G+ + ++ + NRR+++ Sbjct: 256 MNYLVSQGVDQSRLEAV-GYGEAQPIASNKTKEGRAQNRRVEL 297 >gi|325529870|gb|EGD06709.1| hypothetical protein B1M_00030 [Burkholderia sp. TJI49] Length = 214 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + LA E++ I G D R R DNW LS Sbjct: 92 FALNSDQLQPEGRDLLKTLAGPLAAYLKTRDEILMISGFADDQQVRAGNRLFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +GV + + F + A D + NRR++I Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEI 199 >gi|187919198|ref|YP_001888229.1| hypothetical protein Bphyt_4485 [Burkholderia phytofirmans PsJN] gi|187717636|gb|ACD18859.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 215 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++++ + + L + TL +A + G + I I + Sbjct: 39 GVQLELSSKLEQEVKQRQLETQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ + E++ + G TD R R DNW LS Sbjct: 93 FALNSDQLQPQGRDLLKSLAGPLSAYLGANDEILMVSGFTDDQRLREGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 RA + + L+ GV + + G + + NRR++I Sbjct: 153 QRALTVTRALIDDGVPASSLFAAAFGSGQPVSSNTDEQGRAKNRRVEI 200 >gi|86138055|ref|ZP_01056630.1| hypothetical protein MED193_00970 [Roseobacter sp. MED193] gi|85825082|gb|EAQ45282.1| hypothetical protein MED193_00970 [Roseobacter sp. MED193] Length = 477 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 10/152 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + L++ K++ L + + IV+ T II + MF S Sbjct: 327 QTLEEQVAKVADFLGPEIDEGIVQVFQKGNT------LIIRLAGSGMFGSGSDQLSKAFK 380 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + ++ E L + + GH+D P R+ N LSL RA S + + DR Sbjct: 381 TPVARVAEALNDEKGQVIVAGHSDNVPIRSSRFPSNMALSLARAKSVMSGMAQVFDDPDR 440 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +S G A + + NRRI+IL+ Sbjct: 441 LSA-EGRAEKEPIADNGTKAGRAKNRRIEILL 471 >gi|219685751|ref|ZP_03540562.1| flagellar motor apparatus [Borrelia garinii Far04] gi|219672690|gb|EED29718.1| flagellar motor apparatus [Borrelia garinii Far04] Length = 260 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIMVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 + +QKI VL+ I GHTD + + NW LS R+ + + Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202 Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V + ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSNVKSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73 + + + Y D +T+L+ FF+ M+ +N ++ + + F G Sbjct: 4 RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60 >gi|171319197|ref|ZP_02908315.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171095577|gb|EDT40539.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 214 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + LA E++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPEGRDLLKTLAGPLAAYLTTRDEILMVSGFADDQQVRAGNRQFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|124006808|ref|ZP_01691638.1| OmpA domain protein [Microscilla marina ATCC 23134] gi|123987489|gb|EAY27198.1| OmpA domain protein [Microscilla marina ATCC 23134] Length = 570 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + E+I L+ I ++ +I GH+D A +N RLS RA S Sbjct: 468 FASGKTTINDESIPDLKAILAIMKKYPKNKFNIEGHSDNV---GNAANNLRLSQQRANSV 524 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 Q + +G++ R+ G+ R ++++ NRRI++LV Sbjct: 525 RQYFVNNGIAASRLIA-KGYGQTRPEVSNATAAGRKKNRRIEVLV 568 >gi|78065049|ref|YP_367818.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77965794|gb|ABB07174.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 320 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 92/277 (33%), Gaps = 16/277 (5%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P G + + + P +S + + T + + Sbjct: 44 TPVGNGTVATTALSANTGAAPGTASGAVVHGTAGTANTLTPPPATATPGQVVVGGKVPDE 103 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + + + D + D+ + ++ K L +SK ++ + Sbjct: 104 ATKAAVLQKLRDTYGATNVVDQIEVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQ 163 Query: 190 KRL------QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + + ++++S ++ + I G+ + G+L + R F+ S Sbjct: 164 IEMKGEVHNEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGS 222 Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P+ ++L ++ LA + I GHTD N LS RA + L+ Sbjct: 223 ATLTPQGRLILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLI 279 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + +++ +G + +D + NRRI+ Sbjct: 280 TKSILPQQMT-TTGVGPDQPIAPNDTADGRARNRRIE 315 >gi|225375333|ref|ZP_03752554.1| hypothetical protein ROSEINA2194_00958 [Roseburia inulinivorans DSM 16841] gi|225212822|gb|EEG95176.1| hypothetical protein ROSEINA2194_00958 [Roseburia inulinivorans DSM 16841] Length = 270 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 114/327 (34%), Gaps = 72/327 (22%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + ++ P +W ++D M +L+ FF++++ ++ D + + + L + Sbjct: 3 RKKTEEAPAGAPAWMATFSDLMNLLLCFFVLLFSMSTVDAEKFEMVIASLQSSFSILPSG 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 I D G Q +I+Y + Sbjct: 63 GASIGD------------------------------GEMVSSGVSQLQMYDIYYNQMA-- 90 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +++ D +S+D+ + +E A+ +++ + + + Sbjct: 91 ----------NTQTTDDTSESSDVAEEYKEE--------------ALAESEQMAEQVQDL 126 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + I V + +L+++ +FD S E ++ KIG++L Sbjct: 127 VAQY------GIQDQVEIDFNAEYVLLNL---NGAVLFDSGKSEIKSEAYPLMDKIGKIL 177 Query: 260 -AHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGF 315 ++ +I I GHTD PF + +N LS+ RA + + + I SG Sbjct: 178 QSYQQNMIEIEGHTDNIPFTHSSKYENNDVLSMYRALYVADYMRNITTIDPSHIKS-SGR 236 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 + + + NRR++I + + Sbjct: 237 GEYVPIADNSTPEGRARNRRVEIKIYN 263 >gi|332828855|gb|EGK01538.1| hypothetical protein HMPREF9455_02070 [Dysgonomonas gadei ATCC BAA-286] Length = 290 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 D + G ++ R+ + L +QQ+ + + + + + + ++N Sbjct: 38 NDYQEGQLQLRESKTRVASLEDRLREAQQNNADLRAAYAELQNSLNKSLAQSSQGNVNIA 97 Query: 171 ENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + S I + K D L + + L+ ++ + ++ + + + + IS+ Sbjct: 98 KLLDEINASNRFIQHLVEAKNKSDSLNLVMVNNLTRSLSRSEMQDLDIKVLKGVVYISLA 157 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIA-RDNWRL 287 D ++ S + +L KI ++ L + + + G+TD P R+NW L Sbjct: 158 DNM---LYRSGSYEISEKAGEILSKIAKIILDYKDYDVLVEGNTDTDPISRPNIRNNWDL 214 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 S RA S Q L + GV R++ G + ++ + NRR I++ + Sbjct: 215 STLRASSVVQALQNNYGVDPKRMTA-GGRGEYNPVASNSTIEGKALNRRTQIIITPK 270 >gi|242280306|ref|YP_002992435.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242123200|gb|ACS80896.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 250 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 87/203 (42%), Gaps = 12/203 (5%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKKISS 201 S++ K D+ + + K + +S+E+ A+ ++++ +K+ Sbjct: 45 SMSEIDAKKFDMTFQSVSKSISGKLQKIATSKVSREEAGAILNQVVTRRQIIKAQRKVFE 104 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + L V+G++ G I++ + +F+ + ++ + Sbjct: 105 DVKYLQTTKGVEGIMSAKFEDG-KITLK-LPSDVLFNPGQVQLSEKGRNAVKALKNFFIS 162 Query: 262 STEV-ISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I+I+G+TD + + +R DNW +S RA + + LMK G+ +R++ +G Sbjct: 163 HPDQYINIKGYTDDTQPSSKSRLKDNWEISSLRAVNVLRYLMKLGIKPNRLTA-TGLGEM 221 Query: 319 RLKIASDP--MNSANRRIDILVE 339 + ++ NRR++ +++ Sbjct: 222 DPLVPNNSKRNRQRNRRVEFVLD 244 >gi|323529927|ref|YP_004232079.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323386929|gb|ADX59019.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 321 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 96/275 (34%), Gaps = 18/275 (6%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 + ++ N +S + + + G + Sbjct: 49 IRTTALPSASSSAPALNTAGLASGTTGAGTGAVTASPPPANATPGQVVVGGKVPDEATKA 108 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK------ILA 185 L+ + + N + + + D+ + ++ K L +SK + + Sbjct: 109 AVLARLRDTYGAANVVDQI--EVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQID 166 Query: 186 MKRKKRLQDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +K + R + ++++S ++ + I G+ + G+L + R F+ S+ Sbjct: 167 VKGEVRNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSAT 225 Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ +L ++ + T ++I GHTD N LS RA + L+ Sbjct: 226 LTPQGRAILDQMAAAMQKMTTKTVAIIGHTDN---SGNRASNIALSQARADAVKGYLVAK 282 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 GV ++ +G + ++D + NRRI+ Sbjct: 283 GVPPQQM-STTGVGPDQPIASNDTADGRARNRRIE 316 >gi|224373377|ref|YP_002607749.1| major outer membrane protein [Nautilia profundicola AmH] gi|223589055|gb|ACM92791.1| major outer membrane protein [Nautilia profundicola AmH] Length = 209 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++ LQK+ E+L ++ I + GHTD + N +LS RA + Sbjct: 103 FDFNKAVVKKIYYPELQKVAEILKNNPNLKIEVAGHTDN--IGSDEY-NLKLSQKRAEAV 159 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL-VEDRQ 342 +L+ K G+ RI G+ + + + + NRR++I+ + ++Q Sbjct: 160 KNILVNKFGIDPSRIVA-KGYGEKYPLVPNTTETNRALNRRVEIVNITNKQ 209 >gi|58580251|ref|YP_199267.1| hypothetical protein XOO0628 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622235|ref|YP_449607.1| hypothetical protein XOO_0578 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574968|ref|YP_001911897.1| hypothetical protein PXO_04090 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424845|gb|AAW73882.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366175|dbj|BAE67333.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519420|gb|ACD57365.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 224 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++SS L V + +T + ++++D R +F +S P Sbjct: 43 QLSSRLDEAVKQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102 Query: 247 ETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + LA E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKSLAAPLAQYLRAREEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200 >gi|319793801|ref|YP_004155441.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315596264|gb|ADU37330.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 215 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 18/167 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + +K++K + + + L+G +A T I I + + Sbjct: 43 ELATKLEAEVKQRKVEAERLQTLEQALAGPLAAG-------RVTLDNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S+ PE +L+ + LA E++ + G TD R + DNW LS Sbjct: 93 FALNSAELQPEGRQLLKSLAAPLAAYLQARNEMLMVSGFTDDRQVRGGNKQFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRID 335 RA + + L++ G+ + + A + +D S NRR++ Sbjct: 153 QRALTVTRALIEEGIPSSSVFAAAFGAEQAVASNADADGRSKNRRVE 199 >gi|162448691|ref|YP_001611058.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161159273|emb|CAN90578.1| Probable outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 351 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 20/222 (9%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S+ + R E + + +S + + + +L DL Sbjct: 115 SEATTAEAGLARRLDELIAMNEELSARLRSAGQSVGQLAGERGSLSAELAETRAKLDDLR 174 Query: 197 KK----------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +K I + L V ++I + + +F+ + + P Sbjct: 175 RKQAAAEARAAGIRDAVDRLKGAAFAGKVRVGLRAGQLVIEV---PSDALFNGARAELTP 231 Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPF---RNIARDNWRLSLDRAYSAYQVLMKS 302 E L I VL + HTD +W LS RA + + L++ Sbjct: 232 EGRAALDDIAGVLRTMPAFRFQVAAHTDNDRKAMKSARFSSSWDLSAARATAVVKRLVER 291 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 G+S R G+ +D + NRR++ILV Q Sbjct: 292 GMSP-RGLSTVGYGEFSPVGPNDTEAGRARNRRVEILVVAEQ 332 >gi|85858041|ref|YP_460243.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB] gi|85721132|gb|ABC76075.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB] Length = 223 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S+ P + ++ V+ E I + GHTD+ N LS RA + Sbjct: 114 FDTNSAEVRPGLYSEINRVAGVMTQYPETLIRVEGHTDSV---GSDAYNMDLSTRRANAV 170 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +L++ GV++ RI + G+ +D NRR++I + + Sbjct: 171 KTLLVQRGVADSRIE-VVGYGETMPIATNDTEAGRQKNRRVEIKIAPQ 217 >gi|261856649|ref|YP_003263932.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261837118|gb|ACX96885.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 216 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT 272 E R G I + F+ +S+ P+ + VLQ++ + + I + G+T Sbjct: 90 NTGVEVQRQGDGIHLQ-APEAITFNTNSATLKPQFMPVLQQLAQSVNQYPGTIVRVEGNT 148 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D++ A N +LSL+RA S L + GV +RI + G+ R A+ + Sbjct: 149 DST---GSASYNQQLSLNRAQSVASALSQYGVPYNRIQAV-GYGMTRPIASNATAAGRAQ 204 Query: 331 NRRIDILVEDRQ 342 NRR+DIL+ Q Sbjct: 205 NRRVDILIVPAQ 216 >gi|312889185|ref|ZP_07748742.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311298347|gb|EFQ75459.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 286 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ + K V + + + IS+ D ++ S + L KI ++ Sbjct: 127 LTNNLTRSLSADESKDVNVKVLKGVVYISLSDNM---LYKSGSYEISEKAGATLAKIAKI 183 Query: 259 LAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + I G+TD P R+NW LS RA S Q L + GV R++ G Sbjct: 184 ITDYKGYDVLIEGNTDNLPISKPNIRNNWDLSALRASSVVQSLQNNYGVEPKRLTA-GGR 242 Query: 316 AHHRLKIASDPMN--SANRRIDILVEDR 341 + + + + NRR I++ + Sbjct: 243 GEYNPVADNSTESGKAQNRRTQIIITPK 270 >gi|163737814|ref|ZP_02145231.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis BS107] gi|161389340|gb|EDQ13692.1| hypothetical protein RGBS107_19823 [Phaeobacter gallaeciensis BS107] Length = 655 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 19/205 (9%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS---STLSGL 206 + + +L + +N + ++L +KRL+ A+++S L Sbjct: 447 KARDAAQSVQMQNLGQDLNAALARAAAEERRRRLLEESERKRLETEAEQLSSKAQDLEQY 506 Query: 207 VADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262 ++ + + G+ I + +F S+ + K+ +L Sbjct: 507 RSEFFGRLRDVLGNQEGVRIEGDRFVFASEVLFAPGSADLSSAGRAEIGKVAGILQAVAA 566 Query: 263 ------TEVISIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 +I + GHTD +P DNW LS RA S + ++++ G+ +R+S + Sbjct: 567 AIPPEINWIIRVDGHTDDTPLGIHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-N 625 Query: 314 GFAHHRLKIASDP--MNSANRRIDI 336 GF ++ + + NRRI++ Sbjct: 626 GFGEYQPVNPAPTAVARAQNRRIEL 650 >gi|88802743|ref|ZP_01118270.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P] gi|88781601|gb|EAR12779.1| putative flagellar motor protein MotB [Polaribacter irgensii 23-P] Length = 289 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 92/257 (35%), Gaps = 13/257 (5%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + + L TK + Q N++ + +++T + E Sbjct: 20 SKKKYVALESQYTNTKGDLQKTTIEKEQLAAKFSAIEARVENYNTKINSLKSDNVTLERE 79 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD-----LAKKISSTLSGLV 207 L + + L+K + A+ + K L+D +A + ++ L Sbjct: 80 NEVKLSMVGNAAVISTQTRALMNETLTKVDVNALSKAKTLKDSLNLAIAYNLKKSIDILE 139 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 ++ + +T ++IS+ D +F+ +S ++ K+ V+ + Sbjct: 140 IES-SDDIDINIDQTVVMISVSD---KLLFNTASYRVKKGAYKLIAKLAAVIKSEPSMDV 195 Query: 267 SIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324 I GHTD+ N +DNW LS+ RA S ++L E SG + + Sbjct: 196 MIEGHTDSRTISNAVVQDNWDLSVKRATSIVRLLESKYKVEGSRLIASGRGSTMPLVDNS 255 Query: 325 -DPMNSANRRIDILVED 340 NRR I++ Sbjct: 256 SSENRRKNRRTKIVILP 272 >gi|163858178|ref|YP_001632476.1| hypothetical protein Bpet3863 [Bordetella petrii DSM 12804] gi|163261906|emb|CAP44208.1| OmpA-family protein [Bordetella petrii] Length = 215 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 28/174 (16%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232 LS +K+++ ++ L+G +A ++++D R Sbjct: 43 ELSARLESEVKQRQEETQRRIELEQALAGPLAAG--------------RVTLVDGRIGIS 88 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNW 285 + +F +S PE VL+ + L+ EV+ + G TD P R DNW Sbjct: 89 GSVLFALNSDELQPEGEEVLKSLVGPLSAYLQARDEVLMVSGFTDNQPVHGNNRRFADNW 148 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 LS RA + + L++ G++ + + F + ++D ++NRR++I+ Sbjct: 149 DLSAQRALTVTRALIEQGIAPASVFAAA-FGAEQPVASNDSAEGRASNRRVEIV 201 >gi|157165686|ref|YP_001466588.1| OmpA family protein [Campylobacter concisus 13826] Length = 219 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 19/208 (9%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++ E SL + + + E+ P +K + + Sbjct: 2 DAKKMEAAVGSLAGALSVLEGGARPDSQVEKETDPESRRTPKPKAQKGA----QNEVTST 57 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQK 254 KKI+ L+ A + E + G ++ + +FDK S+ + + L++ Sbjct: 58 VKKINELLTASGAPE----ITMEESEDGFIVRL---PAAMLFDKDSAEISGEDAKLFLKR 110 Query: 255 IGEVLAHSTEVIS--IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 IG ++A + I G+TD + +I ++NW+LS RA S + L+ GV ++R+ Sbjct: 111 IGMIIAKMPNEVKTDIIGYTDNTNPSKDSIYKNNWQLSTARALSVLEELVSDGVPQERLI 170 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDI 336 SG A ++ D + N R++I Sbjct: 171 -TSGRASFDPIASNSTDEGRAKNNRVEI 197 >gi|172062592|ref|YP_001810243.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171995109|gb|ACB66027.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 214 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GAVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + LA E++ I G D R R DNW LS Sbjct: 92 FALNSDQLQPDGRDLLKTLAGPLAAYLTTRDEILMISGFADDQQVRAGNRQFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPARSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|221213356|ref|ZP_03586331.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221166808|gb|EED99279.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 316 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 86/246 (34%), Gaps = 18/246 (7%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 + + G + L + + N + + + D+ Sbjct: 73 GTAGTLAPPPANATPGQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQI--EVGDVATP 130 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IV 212 + ++ K L +SK ++ + + + ++I+S ++ + I Sbjct: 131 PNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVHNEAQRQQIASDMANTLNPTYTIR 190 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 G+ + G+L + R F+ S+ P+ +L ++ LA + I GH Sbjct: 191 NGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGKQILDQMAAALAKLQNRTVDIIGH 249 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 TD N LS RA + L+ G++ +++ +G + +D + Sbjct: 250 TDN---SGNRTSNIALSQARADAVKGYLITKGIAPQQMT-TTGVGPDQPIAPNDTADGRA 305 Query: 330 ANRRID 335 NRRI+ Sbjct: 306 RNRRIE 311 >gi|326796443|ref|YP_004314263.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326547207|gb|ADZ92427.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 280 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 14/223 (6%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q ++L + + ++ Q ++ D + ++E +E S Sbjct: 54 QAGNEKQLTETLNGVFDAVQKSVKPINIGDPIIGEPDGEEILEVEPEEAEESVSKGEEGS 113 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + L ++ ISS S L + IS+ + ++ +F + Sbjct: 114 PDNSTPSQIYDLLNEV---ISSQFSSLTQSGK-----VSISENESWISL-ELKSGLLFGE 164 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQ 297 E + +L I +L + + G+TD P A NW LS RA + Sbjct: 165 GEYELTNEAVALLIVISNILNSYPSPVLVEGNTDDQPVSGAAPFSSNWSLSSLRASAVVD 224 Query: 298 VLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 L+ GV+ ++ GF+ K+ +D + NRR+ + + Sbjct: 225 ELVFRGVNP-KLIAPIGFSSEHPKVRNRNDDSRAQNRRVTLKI 266 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 4/147 (2%) Query: 10 ENDQFIIIKKKVA---IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 E + I+ +++ W + YADF+T+L AFF+ ++ I+ +K + Sbjct: 3 ERPKPIVRRRREPYNPRSSADKGKDRWVLSYADFITLLFAFFVALYSISLKQAGNEKQLT 62 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + N + + K I + +P + L ++ + SV + + Sbjct: 63 ETLNGVFDAVQKSVKPI-NIGDPIIGEPDGEEILEVEPEEAEESVSKGEEGSPDNSTPSQ 121 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEK 153 + + + + +SQ S ++ SE Sbjct: 122 IYDLLNEVISSQFSSLTQSGKVSISEN 148 >gi|254480140|ref|ZP_05093388.1| OmpA family protein [marine gamma proteobacterium HTCC2148] gi|214039702|gb|EEB80361.1| OmpA family protein [marine gamma proteobacterium HTCC2148] Length = 213 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 18/167 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS+ + R++ QD + L+ +A T I I + + Sbjct: 42 ELSQSLQQEVTRREAEQDRRMVLEEALAAPLASG-------RITLRDGRIGIS---GSVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNWRLSL 289 F +S E +L + L +++ + G TD P ++ DNW LS Sbjct: 92 FALNSDQLQAEGRELLSSLIPPLKLYLLEQNDLLMVSGFTDDLPIQDGNLHFNDNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRID 335 RA + + L++ G+ + + A + +D S NRR++ Sbjct: 152 QRALTVTRALIEEGMPPSLVFAAAFGAEQPVVANTDSESRSRNRRVE 198 >gi|292492509|ref|YP_003527948.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291581104|gb|ADE15561.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 243 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + D +++ + L+ + ++ + + D + FD S+ + Sbjct: 82 MNDQQREMEAALAEERRRHQLEIQRLQDESLKL-----DIPSEVSFDHDSASLKQAFLPT 136 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L KI +VL + V+ + GHTD++ N LS+ RA + L + GV R+ Sbjct: 137 LDKIADVLKKYNKTVVHVIGHTDST---GSEEYNLDLSVRRAANVAVYLEQKGVPSPRL- 192 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 I G + + ++D NRR++I+++ Sbjct: 193 SIYGEGESQPRASNDTAAGRQLNRRVEIILKP 224 >gi|218783104|ref|YP_002434422.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218764488|gb|ACL06954.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] Length = 217 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 10/136 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + E +++++ N+ +F +SS P L+ I +V+ + I + Sbjct: 89 EQIPNTQVEVQEDKVVVTM---DNSILFAVNSSTVQPAAQGTLRDIAQVMVKYPDTQIMV 145 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 +GHTD++ N +LS RA +L+ GV RI+ I G ++D Sbjct: 146 KGHTDST---GGEEYNQQLSERRANVVKNILISYGVPAHRITAI-GLGEVMPIASNDTPD 201 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++I V Q Sbjct: 202 GRAMNRRVEIEVRPIQ 217 >gi|163781628|ref|ZP_02176628.1| predicted inner membrane protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882848|gb|EDP76352.1| predicted inner membrane protein [Hydrogenivirga sp. 128-5-R1-1] Length = 224 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D+ + E F+ S +A K+ + +++ L Sbjct: 40 DVAQLEKFISYFQPERKMFVRKTSILPPIAPPPKEVALKIKRRVQKVLPPWAFQ------ 93 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273 T + + + D F+ + P+ L ++ VL E I + GH Sbjct: 94 -IVITADFVKLRLFD---KVFFEDGTYQLTPKAREALVEVANVLKKLPENSFIRVEGHVS 149 Query: 274 ASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-MNS 329 + RD W LS+ RA + L GV ++S +G+ + P + Sbjct: 150 SLVEVRGRVVRDKWELSVRRATEVVRFLQAQGVEPTKLSA-AGYGDIKPLYTWRQPILME 208 Query: 330 ANRRIDILV 338 N R++I + Sbjct: 209 RNNRVEIYI 217 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 KKK P +W ++D M++L+ FF++++ +++ D + YF P + + Sbjct: 3 FKKKEECPKPP----AWLTSFSDLMSLLLTFFILIYAMSSLDVAQLEKFISYFQP-ERKM 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITK 108 I PP + KI + + + Sbjct: 58 FVRKTSILPPIAPPPKEVALKIKRRVQKVLPP 89 >gi|149279859|ref|ZP_01885986.1| putative flagellar motor protein MotB [Pedobacter sp. BAL39] gi|149229449|gb|EDM34841.1| putative flagellar motor protein MotB [Pedobacter sp. BAL39] Length = 289 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 12/247 (4%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 D + + K NQK Q + + + E + + L K + Sbjct: 28 DLEASYTQLQEKSRELNQKYQSGQQDLSGSSSRVKSLEEQIASEKANVAALQAALDKCLN 87 Query: 163 LEKSINKEENYFLPPLSKEK---ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 N + + ++ + K + L +++ L+ ++ ++ V + Sbjct: 88 SSSQGNVNISKLVDEINTSNKYIQHLVNTKNKSDSLNVVLTNNLTRSLSREEMRDVDVQV 147 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278 + + IS+ D ++ S L KI +++ + I G+TD P Sbjct: 148 LKGVVYISLSDNM---LYKSGSYEISDVAGQTLAKIAKIIKDYQGYDVLIEGNTDNVPIS 204 Query: 279 NIA-RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 R+NW LS RA S Q L + V R++ G + +D NRR Sbjct: 205 QTNIRNNWDLSALRASSVVQALQNTYSVDPKRLTA-GGRGEYNPVAGNDSEAGKMKNRRT 263 Query: 335 DILVEDR 341 I++ + Sbjct: 264 QIIITPK 270 >gi|254474819|ref|ZP_05088205.1| flagellar motor protein [Ruegeria sp. R11] gi|214029062|gb|EEB69897.1| flagellar motor protein [Ruegeria sp. R11] Length = 655 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 104/312 (33%), Gaps = 25/312 (8%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKID 99 +T L L D ++ + + + + EQ + Q + Sbjct: 349 LLTALEQLELANAAAADRDVLQQRLLAALSDREDASAKASDLASLAEQRAALLA-QARES 407 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 LS ++ I++ + Q + ++ L + ++ + + Sbjct: 408 LSQEQEISQEAQRQTALLNQQVAALREQLGSLQALLDDYKARDVAQQVQMQNLGQDLNAA 467 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + + + A + + QDL + S L Sbjct: 468 LARAAAEERRRRILEEEERKRLEAEAAQLSDKAQDLEQYRSEFFGRLRD--------VLG 519 Query: 220 TRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 + G+ I + +F S+ PE + K+ +L +I + Sbjct: 520 NQEGVRIEGDRFVFASEVLFAPGSADLSPEGRAEIAKVARILQTVAAAIPQGINWIIRVD 579 Query: 270 GHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP 326 GHTD +P DNW LS RA S + ++++ G+ +R+S +GF ++ ++ Sbjct: 580 GHTDDTPLGAHPKFADNWELSQGRALSVVRYMVQALGIPPERLSA-NGFGEYQPVNPAET 638 Query: 327 --MNSANRRIDI 336 + NRRI++ Sbjct: 639 PEARAQNRRIEL 650 >gi|149202409|ref|ZP_01879382.1| hypothetical protein RTM1035_13818 [Roseovarius sp. TM1035] gi|149144507|gb|EDM32538.1| hypothetical protein RTM1035_13818 [Roseovarius sp. TM1035] Length = 586 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 81/243 (33%), Gaps = 16/243 (6%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 K+ + + + + + + E ++ +S+ E N Sbjct: 345 KLSEEAAQATEAQKQQALLNQQVAALRQQLSGLQALLDESKAREAETEVQLQSLGNELNT 404 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQ 231 L ++ E+ ++ L + L ++ + + G+ I Sbjct: 405 ALARVAAEERRRRIAEEERARLLEAEKEDLEKYRSEFFGRLRDVLGQQQGVQIVGDRFVF 464 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIAR- 282 + +F + + K+ +L + I + GHTD P AR Sbjct: 465 SSEVLFAPGEADLSAAGQSEIAKVAGILRNVIGDIPEGIDWVLQVDGHTDNVPIIEGARF 524 Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 DNW LS RA S + L + G R+S +G+ + D + NRRI++ + Sbjct: 525 ADNWALSQARALSVVRYLTGALGFPAGRLSA-NGYGEFQPVNPEDTPAARAQNRRIELKL 583 Query: 339 EDR 341 R Sbjct: 584 TTR 586 >gi|167750717|ref|ZP_02422844.1| hypothetical protein EUBSIR_01695 [Eubacterium siraeum DSM 15702] gi|167656396|gb|EDS00526.1| hypothetical protein EUBSIR_01695 [Eubacterium siraeum DSM 15702] Length = 339 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 14/193 (7%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGV 215 + + + N PP ++ ++ + L ++ S L N + + V Sbjct: 62 VMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSFLKTTTDKNDLGRYV 121 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHT 272 E T T I I NT MFD +S++ E VL K + + I S+ GHT Sbjct: 122 YIEQTPTRIFIRF---NNTIMFDGNSAVLKEEGKQVLNKFMPGIKAVNKYIKSCSVSGHT 178 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNS 329 A ++ ++W LS RA S + + V ++ + + G A + + + Sbjct: 179 -AKAVSDV--NDWDLSAARASSVVKYMDYNRCVDSEKFT-VEGKACYTPIADNSTAEGRA 234 Query: 330 ANRRIDILVEDRQ 342 ANRR++I++ Q Sbjct: 235 ANRRVEIMIVRAQ 247 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 ++ G+W YAD +T+L+ FF++++ ++ D+ + I Q F T+S Sbjct: 3 KRRAESGEEKGNWLDTYADMVTLLLCFFVLLYSASSVDETKWQYIYQSF--------TSS 54 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + E+ N D + + N+ + S + + Sbjct: 55 GSYINPFVMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSF 107 >gi|317048731|ref|YP_004116379.1| DotU family type IV / VI secretion system protein [Pantoea sp. At-9b] gi|316950348|gb|ADU69823.1| type IV / VI secretion system protein, DotU family [Pantoea sp. At-9b] Length = 412 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F ++ V+Q+I + + + I + G++D P R+ N+ Sbjct: 281 SVVTLKGDGLFTSGATTVRGRYEAVIQRIAAAMNNVSGKILVVGYSDNVPIRSARFASNY 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 LSL RA S +L + R+ G + + + NRR++I + Sbjct: 341 ELSLARAQSVQTLLQQQLTQPARVKA-EGRGESNPLVPNTSAENRARNRRVEITLL 395 >gi|319763679|ref|YP_004127616.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|317118240|gb|ADV00729.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] Length = 217 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E +K ++R + + +TL +A + G T I I + + Sbjct: 43 GMQMELAERLKTEQRQRAEQARRLTTLEQALAGPLAAG---RVTLQDGRIGIS---GSVL 96 Query: 237 FDKSSSIPLPETIVVLQKI----GEVLAHSTEVISIRGHTDASPFRNIA-----RDNWRL 287 F +S PE +L+ + L E++ + G TD P R DNW L Sbjct: 97 FAFNSDELQPEGRQLLRSLSAPLAAYLRERGEILMVSGFTDDRPMRGGGGNARFADNWEL 156 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVEDRQG 343 S RA + + L+ G+ ++ + A + +D + NRR+++ R Sbjct: 157 SAQRALTVTRALIDEGIPSAQVFAAAFGAEQAVASNADAEGRARNRRVEMAPMPRPA 213 >gi|291558208|emb|CBL35325.1| Flagellar motor protein [Eubacterium siraeum V10Sc8a] Length = 339 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 14/193 (7%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGV 215 + + + N PP ++ ++ + L ++ S L N + + V Sbjct: 62 VMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSFLKTTTDKNDLGQYV 121 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHT 272 E T T I I NT MFD +S++ E VL K + + I S+ GHT Sbjct: 122 YIEQTPTRIFIRF---NNTIMFDGNSAVLKEEGKQVLNKFMPGIKAVNKYIKSCSVSGHT 178 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNS 329 A ++ ++W LS RA S + + V ++ + + G A + + + Sbjct: 179 -AKAVSDV--NDWDLSAARASSVVKYMDYNRCVDSEKFT-VEGKACYTPIADNSTAEGRA 234 Query: 330 ANRRIDILVEDRQ 342 ANRR++I++ Q Sbjct: 235 ANRRVEIMIVRAQ 247 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 ++ G+W YAD +T+L+ FF++++ ++ D+ + I Q F T+S Sbjct: 3 KRRAESGEEKGNWLDTYADMVTLLLCFFVLLYSASSVDETKWQYIYQSF--------TSS 54 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + E+ N D + + N+ + S + + Sbjct: 55 GSYINPFVMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSF 107 >gi|300775912|ref|ZP_07085772.1| OmpA family protein [Chryseobacterium gleum ATCC 35910] gi|300505462|gb|EFK36600.1| OmpA family protein [Chryseobacterium gleum ATCC 35910] Length = 277 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L+ K+ +L + ++ V + + ++IS+ D+ ++ LP VL K Sbjct: 119 LSNKLKRSLDNVSDED----VQVKVLKGVVMISLSDKM---LYKTGDYNILPAAQEVLGK 171 Query: 255 IGEVLAHST-EVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + +V+ + I G+TD +P N+ RDNW LS R S +VL GV RI+ Sbjct: 172 VAKVINDYDKYSVLIEGNTDNAPLNSPNLPRDNWDLSALRGTSVAKVLQTQFGVDPARIT 231 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 G + + K + + NRR +I++ + Sbjct: 232 A-GGRSEYNPKATNMSVSGRAENRRTEIIIMPK 263 >gi|298486507|ref|ZP_07004567.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158984|gb|EFI00045.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 26/265 (9%) Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 G Q+ + Q D + T + R E YL + Sbjct: 21 GCAGHQDSGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVS 80 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 H +R SE ++L S + ++ E L + K+ + +++ Sbjct: 81 HYAYLSSRYSEIARNLMLSQERLAKMDMERQRLQLALREAKLASAQQQ------------ 128 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 G ++ + + T G+++++ D +FD + + K+ + L Sbjct: 129 ---GRWLEDQILSLATTETDRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQI 181 Query: 262 STEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + I G+TD++ ++N +LS DRA + VLM GV E RI + G++ Sbjct: 182 NPRRVVRIEGYTDST---GDRQENLKLSKDRAQAVADVLMDLGVDEKRIH-VEGYSQQFP 237 Query: 321 KIAS--DPMNSANRRIDILVEDRQG 343 A+ + + NRR++I+ D +G Sbjct: 238 VNANASERGRAQNRRVEIVFSDEKG 262 >gi|209883793|ref|YP_002287650.1| OmpA/MotB [Oligotropha carboxidovorans OM5] gi|209871989|gb|ACI91785.1| OmpA/MotB [Oligotropha carboxidovorans OM5] Length = 464 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ P+++ +L ++ EV L ST I I GHTD++ A N LS RA S Sbjct: 363 FETGKAVIDPDSVGLLDRLVEVVLRCSTSQIEITGHTDSN---GDAESNLALSNRRAQSV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 L+K+GV +RI+ I GF R +D + NRRI+ LV+ Sbjct: 420 ADYLIKAGVPSERITAI-GFGSGRPIAPNDTEEGKAQNRRIEFLVK 464 >gi|107102449|ref|ZP_01366367.1| hypothetical protein PaerPA_01003511 [Pseudomonas aeruginosa PACS2] Length = 269 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRL--QDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +N+E L + LA++ K L Q+ +++S ++ L E T G+ Sbjct: 99 LNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASL---------STEETERGL 149 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 ++++ D +FD + + P K+ + L + I I G+TD+ + Sbjct: 150 VLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDRQA 202 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 N LS +RA + VL GV R+ ++ G+ AS+ + NRR++I+ + Sbjct: 203 NLDLSRERAQAVADVLADLGVDPARM-QVVGYGEAFPVTDNASNRGRAQNRRVEIVFSND 261 Query: 342 QG 343 +G Sbjct: 262 KG 263 >gi|49082800|gb|AAT50800.1| PA2900 [synthetic construct] Length = 270 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRL--QDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +N+E L + LA++ K L Q+ +++S ++ L E T G+ Sbjct: 99 LNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASL---------STEETERGL 149 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 ++++ D +FD + + P K+ + L + I I G+TD+ + Sbjct: 150 VLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDRQA 202 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 N LS +RA + VL GV R+ ++ G+ AS+ + NRR++I+ + Sbjct: 203 NLDLSRERAQAVADVLADLGVDPARM-QVVGYGEAFPVTDNASNRGRAQNRRVEIVFSND 261 Query: 342 QG 343 +G Sbjct: 262 KG 263 >gi|332702326|ref|ZP_08422414.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552475|gb|EGJ49519.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 243 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 8/205 (3%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S ++ LTR + D+ T + + L + AM++++R++DL Sbjct: 37 SMSTMDRSYLTRVTIFTSDVSLMTVRAAGRIPTKMQVVIELLENPREAMRKQQRIKDLLF 96 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 S + + + + G+ + + D +F + + +L++I Sbjct: 97 PDDIMPSQVDRALLEENLQILARDEGVALVLSD---KLLFAMGEAKLKDSALPILERIAY 153 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 VLA T +++ GH+D + N+ +S +RA Q L + G+ R+ +S F Sbjct: 154 VLAFMTAPVNVAGHSDM--VGGRSDGNYAISANRAMEVLQFLQEYGLDNRRL-SVSAFGP 210 Query: 318 HRLKIASDPMNS--ANRRIDILVED 340 + + + NRR++ILV+ Sbjct: 211 DQPLLEGNGPAVWNKNRRVEILVKT 235 >gi|325524318|gb|EGD02423.1| OOP family OmpA-OmpF porin [Burkholderia sp. TJI49] Length = 254 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 86/246 (34%), Gaps = 18/246 (7%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 IT + G + L + + N + + + D+ Sbjct: 11 GTAGTITPPPANATPGQVVVGGKVPDEATKAAVLQKLRDTYGAANVVDQI--EVGDVATP 68 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRL------QDLAKKISSTLSGLVADN--IV 212 + ++ K L +SK ++ + + + ++++S ++ + I Sbjct: 69 PNWSANVQKLLGPQLKQISKGQLKINGTQIEMKGEVHNEAQRQQLASDMANTLNPTYTIR 128 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 G+ + G+L + R F+ S+ P+ +L ++ LA + I GH Sbjct: 129 NGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGKQILDQMAAALAKMPNRTVDIIGH 187 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 TD N LS RA + L+ ++ +++ +G + +D + Sbjct: 188 TDN---SGNRTSNIALSQARADAVKGYLITKSIAPQQMT-TTGVGPDQPIAPNDTAEGRA 243 Query: 330 ANRRID 335 NRRI+ Sbjct: 244 RNRRIE 249 >gi|258592566|emb|CBE68875.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 184 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 194 DLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 D+ + LS V + I G V E G+++ D +F S+ + +L Sbjct: 63 DVVGLLVQQLSSHVEEEIKTGSVEIERNDKGLILRFRDT---VLFGLGSATLSDDAKKIL 119 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSA-YQVLMKSGVSEDRIS 310 K+ L + I + GHTD P R+ NW LS+ RA + ++ R++ Sbjct: 120 DKVARPLFNMPYAIEVEGHTDLLPIRSSNFPSNWELSVTRATAVIRHLVEVHRFPPARLA 179 Query: 311 K 311 Sbjct: 180 A 180 Score = 39.9 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQNPPERS 93 + YAD +T+L+AFF+V++ + D + FG L Sbjct: 1 MTYADMITLLLAFFIVLYASSRVDGRKYSDLVSSIRMAFGVPLPPRPIVQAGNGGETLLP 60 Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 + + L + + + ++K GS ++ + Sbjct: 61 FPDVVGLLVQQLSSHVEEEIKTGSVEIERNDK 92 >gi|269121368|ref|YP_003309545.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] gi|268615246|gb|ACZ09614.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] Length = 215 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L D GV T G I ++ N F +SS L I VL Sbjct: 77 DKQEAKLREDLKGTGVEVTRTAEG-EIKLVAPENVT-FATNSSTISSRFTNTLDSIASVL 134 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I++ GHTD++ N A +N LS++RA S L + G++ RI+ + G+ Sbjct: 135 KEYPDSNITVSGHTDST--GNDAINN-PLSVNRANSVANYLKQEGIASSRITAV-GYGSK 190 Query: 319 RLKIASDP--MNSANRRIDILVEDR 341 + ++ + NRR++I + + Sbjct: 191 QPVASNSTSDGRAQNRRVEIKITAK 215 >gi|15598096|ref|NP_251590.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|116050903|ref|YP_790274.1| putative outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|218890901|ref|YP_002439767.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254235886|ref|ZP_04929209.1| hypothetical protein PACG_01830 [Pseudomonas aeruginosa C3719] gi|254241564|ref|ZP_04934886.1| hypothetical protein PA2G_02265 [Pseudomonas aeruginosa 2192] gi|296388613|ref|ZP_06878088.1| putative outer membrane protein precursor [Pseudomonas aeruginosa PAb1] gi|313108050|ref|ZP_07794215.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|9948992|gb|AAG06288.1|AE004716_6 probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|115586124|gb|ABJ12139.1| putative outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|126167817|gb|EAZ53328.1| hypothetical protein PACG_01830 [Pseudomonas aeruginosa C3719] gi|126194942|gb|EAZ59005.1| hypothetical protein PA2G_02265 [Pseudomonas aeruginosa 2192] gi|218771126|emb|CAW26891.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|310880717|gb|EFQ39311.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 269 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRL--QDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +N+E L + LA++ K L Q+ +++S ++ L E T G+ Sbjct: 99 LNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASL---------STEETERGL 149 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 ++++ D +FD + + P K+ + L + I I G+TD+ + Sbjct: 150 VLTLGD----VLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSV---GDRQA 202 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 N LS +RA + VL GV R+ ++ G+ AS+ + NRR++I+ + Sbjct: 203 NLDLSRERAQAVADVLADLGVDPARM-QVVGYGEAFPVTDNASNRGRAQNRRVEIVFSND 261 Query: 342 QG 343 +G Sbjct: 262 KG 263 >gi|283851028|ref|ZP_06368313.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283573674|gb|EFC21649.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 263 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 10/186 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV-- 212 +D + + ++ F+ P + + K + L +I+ + L++ ++ Sbjct: 65 QDKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE-NKLKYEIALLIKELISSDLSVK 123 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 +G+L+ + N+ MF S+ P VL + +L +++RGH Sbjct: 124 NNSGVSNDSSGVLMQV---NNSVMFRTGSAELTPAAAKVLDGVARILQDFKINLTVRGHA 180 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIA--SDPMNS 329 D W LS RA +A + L K+G+ R+ + G A + + S + Sbjct: 181 DDEEKGGPYPSKWELSAARAAAATRYLAEKTGIPTTRLRAV-GLADSQPLVPPTSAENKA 239 Query: 330 ANRRID 335 NRRI+ Sbjct: 240 RNRRIE 245 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 3/100 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 + + ++I ++ ++ GSWK+ YADF+T +MAFFL++W++ + K+ + F Sbjct: 5 SDGKTVVIYRESDEGHGGHHGGSWKVAYADFVTAMMAFFLLLWLVVSLKPQRKQELSLVF 64 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 + + + + + + P S + I S + +++ Sbjct: 65 Q---DKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE 101 >gi|71907729|ref|YP_285316.1| hypothetical protein Daro_2103 [Dechloromonas aromatica RCB] gi|71847350|gb|AAZ46846.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 214 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 S E + ++++ + +A + L+G +A T I IS +F Sbjct: 46 SLESEIQKRQQEEQRRMA--LEKALAGPLASG-----RVTLTNGKIGIS-----GNVLFA 93 Query: 239 KSSSIPLPETIVVLQK----IGEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDR 291 +S PE +L+ I L S +++ + G TD P R R DNW LS R Sbjct: 94 LNSDQLQPEGKQLLKSLSQPIAAYLGASEQMLMVSGFTDDMPVRGSNRQFADNWELSAQR 153 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 A + + L+ GV I + F + + + NRR++ Sbjct: 154 ALTVTRTLIDDGVPASSIFAAA-FGAQQPVADNAAAEGRARNRRVE 198 >gi|33595602|ref|NP_883245.1| hypothetical protein BPP0920 [Bordetella parapertussis 12822] gi|33600116|ref|NP_887676.1| hypothetical protein BB1130 [Bordetella bronchiseptica RB50] gi|33565680|emb|CAE40328.1| probable outer membrane protein [Bordetella parapertussis] gi|33567714|emb|CAE31628.1| probable outer membrane protein [Bordetella bronchiseptica RB50] Length = 215 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 19/167 (11%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGI-------LISIIDQR----NTPMFDKSSSI 243 + ++S+ L V + E + ++++D R +F +S Sbjct: 40 MQIELSTRLEAEVEQRQAETQRREALEQALAAPLAAGRVTLVDGRIGISGNVLFALNSDQ 99 Query: 244 PLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAY 296 PE +L + L+ E++ + G TD R DNW LS RA + Sbjct: 100 LQPEGREILASLVAPLSAYLRAHDEILMVSGFTDDQQVHQGNRRYADNWELSAQRALTVT 159 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILVEDRQ 342 + L+ +G+ + + A + A + + NRR++I RQ Sbjct: 160 RALIDAGIPAASVFAAAFGAEQPVASNADETGRAQNRRVEIAPIPRQ 206 >gi|317151983|ref|YP_004120031.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942234|gb|ADU61285.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 241 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 10/205 (4%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 S LTR + + DL + L ++ + +K+RL+DL Sbjct: 36 MSSMDNAILTRVTLQTADLGLLDKRGSGRVDVRERLVIELMEKPWEVLDKKQRLKDLLFP 95 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 L + K + G+ + D +F+ +S +L+ + V Sbjct: 96 DDVLPDDLSKAELDKNLEILAKPDGVALVFTD---KLLFEPGASRLSLRGEQLLEALTPV 152 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 L + +++ GHTDA + D + LS DRA + L+ +GV + R +S + Sbjct: 153 LLFTAAPVNVAGHTDA---SDTGADPYALSGDRALAVLSFLVDAGVPDRRF-SLSAYGSD 208 Query: 319 RLKIASDP---MNSANRRIDILVED 340 + +S NRR++IL++ Sbjct: 209 VPALDERDRPVASSMNRRVEILLKT 233 >gi|159045480|ref|YP_001534274.1| hypothetical protein Dshi_2940 [Dinoroseobacter shibae DFL 12] gi|157913240|gb|ABV94673.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 648 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 16/241 (6%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 ++ + + + + E ++ +++ E Sbjct: 404 AQEQLRRVEAQSAQDARRVAVLNEQVAALRTQLNSLQGLLDEASARDAEAQVQIEALGTE 463 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--I 228 N L ++ E+ ++ + + + L+ ++ + + G+ I Sbjct: 464 LNTALARVAAEQRARADLEEAERRRLEAEAQDLARYRSEFFGELRDLLGGQEGVRIEGDR 523 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNI 280 ++ +FD P+ + K+ +L + I + GHTD P Sbjct: 524 FVFSSSVLFDTGEVALSPQGQAEVAKVAGILRSVADRIPEGIDWVLRVDGHTDNVPVTGG 583 Query: 281 AR--DNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + DNW LS RA S + L G+ DR+ +GF ++ D + NRRI+ Sbjct: 584 GKYADNWELSQGRALSVARFLIEDQGIPPDRL-APTGFGEYQPVSLEDTPEGRALNRRIE 642 Query: 336 I 336 + Sbjct: 643 L 643 >gi|254464778|ref|ZP_05078189.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206685686|gb|EDZ46168.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 613 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 17/206 (8%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 +++ + DL ++ + + E+ + + + LA K + L Sbjct: 405 QTRDAAQQVQLQNLGQDLNAALARAASEERRRRLLEEQERKRLEAEAEALASK-AQDLER 463 Query: 206 LVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 ++ + T+ G+ I + +F S+ P V + K+ +L Sbjct: 464 YRSEFFGRLRDLLGTQEGVRIQGDRFVFASEVLFAPGSATLSPAGKVEIAKVVSILQSVV 523 Query: 264 --------EVISIRGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 +I + GHTD +P DNW LS RA S + ++++ GV R++ Sbjct: 524 AAIPPEISWIIRVDGHTDDTPLVAHPKFNDNWELSQGRALSVVRYMVEALGVPPSRLAA- 582 Query: 313 SGFAHHRLKIA--SDPMNSANRRIDI 336 +GF ++ + + + NRRI++ Sbjct: 583 NGFGEYQPVNSAGTPEARAQNRRIEL 608 >gi|78063303|ref|YP_373211.1| hypothetical protein Bcep18194_B2456 [Burkholderia sp. 383] gi|77971188|gb|ABB12567.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 214 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + L E++ I G D R DNW LS Sbjct: 92 FALNSDQLQPAGRDLLKTLAAPLGAYLKTRDEILMISGFADDQQVHAGNRQFTDNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|322436615|ref|YP_004218827.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321164342|gb|ADW70047.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 531 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 107/286 (37%), Gaps = 19/286 (6%) Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KK 122 I Q + T + D +N + S D+ ++ + +V + +K Sbjct: 237 IAQQNGADKYSPDTMASAKQDLKNASDIDSGKHRDVKMEITYARQAVQRAEDARVDTLRK 296 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 + + N N Q + ++ ++ + + + D +KS + L + + Sbjct: 297 KAAERQRNAEIAKNDAQQQAAQSQAQAEAARLAEQKSALDAQKSQLAAQQAQLAQANADA 356 Query: 183 ILAMKRKKRLQDLAK--------KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + A R K L+ + + + + + + + + T G+++++ D Sbjct: 357 LAAQARNKELEANQRADAANKRAESAEQMRERLRAQLNEVLQTTETSRGVIVNLSD---- 412 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T V L ++ +L + + G+TD N RLS +RA Sbjct: 413 ALFDTGKYTLKTNTQVSLARVAGILQSYPGLKVQVEGYTD---IVGSDALNQRLSENRAN 469 Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + ++K GV D IS G A + + NRR++++V Sbjct: 470 TTRDFMVKQGVPTDSISAAGYGKADPVADNGTAAGRAQNRRVELVV 515 >gi|171316577|ref|ZP_02905793.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171098305|gb|EDT43111.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 316 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 85/251 (33%), Gaps = 18/251 (7%) Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 + I + G + L + + N + + + Sbjct: 68 GTVVHGTAGTIAPPPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAANVVDQI--EVG 125 Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL------QDLAKKISSTLSGLVAD 209 D+ + ++ K L +SK ++ + + + ++++S ++ + Sbjct: 126 DVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVHNEAQRQQLASDMANTLNP 185 Query: 210 N--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266 I G+ + G+L + R F+ S+ P+ +L ++ L+ + Sbjct: 186 TYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGRQILDQMAAALSKLQNRTV 244 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTD N LS RA + L+ + +++ +G + +D Sbjct: 245 DIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQMT-TTGVGPDQPIAPNDT 300 Query: 327 --MNSANRRID 335 + NRRI+ Sbjct: 301 AEGRARNRRIE 311 >gi|227540121|ref|ZP_03970170.1| OmpA/MotB:Rickettsia surface antigen [Sphingobacterium spiritivorum ATCC 33300] gi|300771844|ref|ZP_07081715.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861] gi|227239982|gb|EEI89997.1| OmpA/MotB:Rickettsia surface antigen [Sphingobacterium spiritivorum ATCC 33300] gi|300761230|gb|EFK58055.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 173 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFE-----TTRTGILISIIDQRNTPMFDKSSSIPL 245 + Q L + LS D+ +K V E T GI S+ +F +SS Sbjct: 21 KQQALTVNPGAVLSKDGTDDGLKNVKEEFKDASRTEEGIKFSLSSD---FLFPTNSSYLT 77 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 ++ L K+ ++L +++ I + GHTDA+ + W LS RA S + L+ SG+ Sbjct: 78 DKSKGELSKLAKLLKDNSKTKIRVDGHTDAT--GTPEYNLW-LSDKRAVSVKKFLVDSGI 134 Query: 305 SEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 SE RI +K G A + NRR+++++ +++ Sbjct: 135 SESRITTKGIGQAKPVADNKTPEGRQMNRRVEVVLLNQK 173 >gi|124008054|ref|ZP_01692753.1| peptidoglycan-associated cytoplasmic membrane protein, putative [Microscilla marina ATCC 23134] gi|123986468|gb|EAY26274.1| peptidoglycan-associated cytoplasmic membrane protein, putative [Microscilla marina ATCC 23134] Length = 563 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +S+ +T+ LQ I ++L + I HTD DN LS RA + Sbjct: 461 LFDYNSAKLDDKTLGYLQTIAQLLKKEPQLKLEISAHTDN---HGTHDDNMNLSKQRAQA 517 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L+K+GV R+S G+ R + + NRR+++ V Sbjct: 518 VKEFLVKAGVDVKRLSA-KGYGETRPLVPNTTVANRERNRRVELKVL 563 >gi|45656490|ref|YP_000576.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599725|gb|AAS69213.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 475 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 12/128 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 V T GI IS+ N+ +FD +SS E + L++I VL + I I GHTD Sbjct: 353 VEIRRTEEGIAISL----NSVLFDHNSSELKQEAKLELKRIASVLKKYADREIRISGHTD 408 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330 N +LS +RA S + L G+ E R+ G+ + + Sbjct: 409 N---SGGEEYNRKLSRERALSVLKELRDEQGLEEKRM-SYEGYGKSKPIADNSTIQGRQK 464 Query: 331 NRRIDILV 338 NRR+DI + Sbjct: 465 NRRVDITI 472 >gi|53716748|ref|YP_105773.1| hypothetical protein BMAA1115 [Burkholderia mallei ATCC 23344] gi|53722286|ref|YP_111271.1| hypothetical protein BPSS1264 [Burkholderia pseudomallei K96243] gi|67640638|ref|ZP_00439437.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|76817712|ref|YP_335426.1| hypothetical protein BURPS1710b_A0267 [Burkholderia pseudomallei 1710b] gi|121597371|ref|YP_989733.1| hypothetical protein BMASAVP1_0116 [Burkholderia mallei SAVP1] gi|124383227|ref|YP_001024134.1| hypothetical protein BMA10229_0310 [Burkholderia mallei NCTC 10229] gi|126444000|ref|YP_001062783.1| hypothetical protein BURPS668_A1788 [Burkholderia pseudomallei 668] gi|126447861|ref|YP_001078471.1| hypothetical protein BMA10247_A1285 [Burkholderia mallei NCTC 10247] gi|126458362|ref|YP_001075736.1| hypothetical protein BURPS1106A_A1702 [Burkholderia pseudomallei 1106a] gi|134283770|ref|ZP_01770468.1| ompA family protein [Burkholderia pseudomallei 305] gi|167004053|ref|ZP_02269827.1| OmpA family protein [Burkholderia mallei PRL-20] gi|167723789|ref|ZP_02407025.1| hypothetical protein BpseD_32535 [Burkholderia pseudomallei DM98] gi|167742753|ref|ZP_02415527.1| hypothetical protein Bpse14_32062 [Burkholderia pseudomallei 14] gi|167819935|ref|ZP_02451615.1| hypothetical protein Bpse9_32712 [Burkholderia pseudomallei 91] gi|167828320|ref|ZP_02459791.1| hypothetical protein Bpseu9_31854 [Burkholderia pseudomallei 9] gi|167849768|ref|ZP_02475276.1| hypothetical protein BpseB_31255 [Burkholderia pseudomallei B7210] gi|167898369|ref|ZP_02485770.1| hypothetical protein Bpse7_31831 [Burkholderia pseudomallei 7894] gi|167906730|ref|ZP_02493935.1| hypothetical protein BpseN_31160 [Burkholderia pseudomallei NCTC 13177] gi|167915084|ref|ZP_02502175.1| hypothetical protein Bpse112_31676 [Burkholderia pseudomallei 112] gi|167922922|ref|ZP_02510013.1| hypothetical protein BpseBC_30487 [Burkholderia pseudomallei BCC215] gi|217418998|ref|ZP_03450505.1| OmpA family protein [Burkholderia pseudomallei 576] gi|226198078|ref|ZP_03793650.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|237510063|ref|ZP_04522778.1| OmpA/MotB domain protein [Burkholderia pseudomallei MSHR346] gi|242311463|ref|ZP_04810480.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|254174540|ref|ZP_04881202.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|254183624|ref|ZP_04890216.1| ompA family protein [Burkholderia pseudomallei 1655] gi|254191105|ref|ZP_04897610.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237] gi|254193505|ref|ZP_04899939.1| ompA family protein [Burkholderia pseudomallei S13] gi|254200586|ref|ZP_04906951.1| OmpA family protein [Burkholderia mallei FMH] gi|254262357|ref|ZP_04953222.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|254301765|ref|ZP_04969208.1| ompA family protein [Burkholderia pseudomallei 406e] gi|254356764|ref|ZP_04973039.1| OmpA family protein [Burkholderia mallei 2002721280] gi|52212700|emb|CAH38731.1| OmpA family membrane protein [Burkholderia pseudomallei K96243] gi|52422718|gb|AAU46288.1| ompA family protein [Burkholderia mallei ATCC 23344] gi|76582185|gb|ABA51659.1| ompA family protein [Burkholderia pseudomallei 1710b] gi|121225169|gb|ABM48700.1| ompA family protein [Burkholderia mallei SAVP1] gi|124291247|gb|ABN00517.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126223491|gb|ABN86996.1| OmpA family protein [Burkholderia pseudomallei 668] gi|126232130|gb|ABN95543.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|126240715|gb|ABO03827.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|134244952|gb|EBA45048.1| ompA family protein [Burkholderia pseudomallei 305] gi|147748198|gb|EDK55273.1| OmpA family protein [Burkholderia mallei FMH] gi|148025791|gb|EDK83914.1| OmpA family protein [Burkholderia mallei 2002721280] gi|157811639|gb|EDO88809.1| ompA family protein [Burkholderia pseudomallei 406e] gi|157938778|gb|EDO94448.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237] gi|160695586|gb|EDP85556.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|169650258|gb|EDS82951.1| ompA family protein [Burkholderia pseudomallei S13] gi|184214157|gb|EDU11200.1| ompA family protein [Burkholderia pseudomallei 1655] gi|217398302|gb|EEC38317.1| OmpA family protein [Burkholderia pseudomallei 576] gi|225929954|gb|EEH25969.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|235002268|gb|EEP51692.1| OmpA/MotB domain protein [Burkholderia pseudomallei MSHR346] gi|238521399|gb|EEP84851.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|242134702|gb|EES21105.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|243060517|gb|EES42703.1| OmpA family protein [Burkholderia mallei PRL-20] gi|254213359|gb|EET02744.1| ompA family protein [Burkholderia pseudomallei 1710a] Length = 215 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 16/169 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E + + R + L + TL +A + G + I I + + Sbjct: 39 GVQLELSSKLDAEVRQRQLESQRRKTLEQALAAPLAAGRVTLVNG---RIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + LA ++ + G D R R DNW LS Sbjct: 93 FALNSDELQPAGRDLLKSLAGPLAAYLNANHEILMVSGFADDLQVRAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + + GV + + F + ++D + NRR++I Sbjct: 153 KRALTVTRAFIDEGVPASSVFAAA-FGSEQPVSPNSNDAGRAKNRRVEI 200 >gi|83854840|ref|ZP_00948370.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1] gi|83842683|gb|EAP81850.1| flagellar motor protein [Sulfitobacter sp. NAS-14.1] Length = 582 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 17/203 (8%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 +D K L+ + ++E+ A L + + L ++ + Sbjct: 382 ARDAAKEVQLQSLGSDLNTALARVAAEERRRAELEAAERARLEAE-TKNLEQYRSEFFGR 440 Query: 214 GVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HST 263 + G+ I + +F ++ + + K+ +L Sbjct: 441 LRALLGNQEGVRIEGDRFVFSSEVLFPPGAATLSADGRGEIAKVAGILRNIAADIPPEID 500 Query: 264 EVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320 VI + GHTD P + DNW LS RA S + ++ G++ +R++ +GF ++ Sbjct: 501 WVIRVDGHTDNQPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQP 559 Query: 321 KIASDPMNSA--NRRIDILVEDR 341 + + + NRRI++ + +R Sbjct: 560 VASGNTEAARAQNRRIELKLTER 582 >gi|115350445|ref|YP_772284.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115280433|gb|ABI85950.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 316 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 22/255 (8%) Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 + I + G + L + + N + + + Sbjct: 66 GSGTVVHGTAGTIAPPPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAANVVDQI--E 123 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKIL----------AMKRKKRLQDLAKKISSTL 203 D+ + ++ K L +SK ++ + + + Q LA +++TL Sbjct: 124 VGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEVKGEVHNEAQRQQLASDMANTL 183 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + I G+ + G+L + R F+ S+ P+ +L ++ L+ Sbjct: 184 NPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQGRQILDQMAAALSKLQ 240 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I GHTD N LS RA + L+ + +++ +G + Sbjct: 241 NRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQMT-TTGVGPDQPIA 296 Query: 323 ASDP--MNSANRRID 335 +D + NRRI+ Sbjct: 297 PNDTADGRARNRRIE 311 >gi|319790576|ref|YP_004152209.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] gi|317115078|gb|ADU97568.1| OmpA/MotB domain protein [Thermovibrio ammonificans HB-1] Length = 251 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 72/138 (52%), Gaps = 12/138 (8%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + +++D K V+ E R +++ +++ +F +S+ PE + LQ+I + L + Sbjct: 111 APVISDKRPKAVVKEPGRVKVVL-----KDSVLFGLNSAELKPEAVKELQRIAQTLKENP 165 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + + G+TD + + N +LS +RA + +VL+++GV +RI + G Sbjct: 166 KTTVVVVGYTDNT---GSLKYNLKLSKERAEAVKKVLVEAGVRPERIL-VFGCGPKNPIA 221 Query: 323 ASDP--MNSANRRIDILV 338 +D + NRR++IL+ Sbjct: 222 PNDTPQHRALNRRVEILI 239 >gi|116688507|ref|YP_834130.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|116646596|gb|ABK07237.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 316 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T + + NP + + I + G + L Sbjct: 50 TVATTALPQANPNAGGASGTVVHGTAGTIAPPPANATPGQVVVGGKVPDEATKAAVLQKL 109 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL----- 192 + + N + + + D+ + ++ K L +SK ++ + + Sbjct: 110 RDTYGATNVVDQV--EVGDVATPPNWSANVQKLLGAQLKQISKGQLKINGTQIEMKGEVH 167 Query: 193 -QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++++S ++ + I G+ + G+L + R F+ S+ P+ Sbjct: 168 NEAQRQQLASDMANTLNPTYTIKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQGK 226 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++L ++ LA + I GHTD N LS RA + L+ + + Sbjct: 227 LILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQ 283 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRID 335 ++ +G + +D + NRRI+ Sbjct: 284 MT-TTGVGPDQPIAPNDMADGRARNRRIE 311 >gi|162454713|ref|YP_001617080.1| hypothetical protein sce6431 [Sorangium cellulosum 'So ce 56'] gi|161165295|emb|CAN96600.1| Putative outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 293 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 25/240 (10%) Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 + Q+Q E + ++ K +E K L + +N+ +S+ Sbjct: 46 QSQHQTTEGRLAETQKELEAAQAK-----VAELTKQLEAAGVDIGKLNENLQATSTQVSQ 100 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI------IDQRNT 234 +R+K L + + + +K L E T+ G+ ++I I Sbjct: 101 LSSTLEEREKALAEFKARARQLEAIKARFETLKKKLDELTKLGLAVNIRNNRMVISLPGD 160 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIA-RDNWRLSL 289 +FD E +L K+ V+ + + GHTD P RDNW LSL Sbjct: 161 VLFDSGRETLKKEGKEILLKVATVVKNDKSLLQRDYQVAGHTDNKPLVGGQFRDNWGLSL 220 Query: 290 DRAYSAYQVLMK-------SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA L+ G +GFA +D NRR D++V Sbjct: 221 MRAREVLVFLVSPADVKGGGGALPVANWSAAGFADTDPVATNDTDEGRQKNRRCDLIVVP 280 >gi|163786812|ref|ZP_02181260.1| OmpA domain protein [Flavobacteriales bacterium ALC-1] gi|159878672|gb|EDP72728.1| OmpA domain protein [Flavobacteriales bacterium ALC-1] Length = 465 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 8/127 (6%) Query: 218 ETTRTGILISIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 E T ++ ++ +FD + ET VLQ + + + SI GHTD+ Sbjct: 343 EVKPTAEVVETLNTYARSILFDTGKASFKKETDQVLQAMVAIFKEYPKADFSIEGHTDSV 402 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N LS RA + L+ +G+S DR++ +G+ + NRR Sbjct: 403 ---GSKSTNQALSDRRANAVRDYLIANGISADRLTA-AGYGEDNPIANNKTRAGRKENRR 458 Query: 334 IDILVED 340 +++ +++ Sbjct: 459 VEVKLKN 465 >gi|24216314|ref|NP_713795.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] gi|24197586|gb|AAN50813.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] Length = 475 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 12/128 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 V T GI IS+ N+ +FD +SS E + L++I VL + I I GHTD Sbjct: 353 VEIRRTEEGIAISL----NSVLFDHNSSELKQEAKLELKRIASVLKKYADREIRISGHTD 408 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330 N +LS +RA S + L G+ E R+ G+ + + Sbjct: 409 N---SGGEEYNRKLSRERALSVLKELRDEQGLEEKRM-SYEGYGKSKPIADNSTIQGRQK 464 Query: 331 NRRIDILV 338 NRR+DI + Sbjct: 465 NRRVDITI 472 >gi|307727249|ref|YP_003910462.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307587774|gb|ADN61171.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 219 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++++ + + L + TL +A + G + I I + Sbjct: 42 GVQLELSNKLEQEVKQRQLETQRRKTLEEALAGPLAAGRVTLVNG---RIGIS---GNVL 95 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ + E++ + G TD R R DNW LS Sbjct: 96 FALNSDQLQPQGRDLLKSLAGPLSAYLRANDEMLMVSGFTDDQRLREGNRRFADNWELSA 155 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 RA + + L+ +GV + + G A + + NRR++I Sbjct: 156 QRALTVTRALIDAGVPVSSVFAAAFGSGQPVSSNADEQGRARNRRVEI 203 >gi|13472158|ref|NP_103725.1| hypothetical protein mlr2359 [Mesorhizobium loti MAFF303099] gi|14022903|dbj|BAB49511.1| mlr2359 [Mesorhizobium loti MAFF303099] Length = 504 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 8/149 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +I + L G+ T I++ I N +F + + + I + Sbjct: 349 QIDRIRAALAQQIAAGGLGVGTKGDFIVVEIS---NQLLFASGQAELKAQFQPIAADIAK 405 Query: 258 VLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L I I GHTD + + N+ LS+ RA + ++ + R+ + G Sbjct: 406 ALDAEAGPIKIVGHTDNVKPKKSSAFKSNFDLSVARAKAVQAMIARQLKDPSRL-SVDGK 464 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + NRR+D+++ ++ Sbjct: 465 GEDEPIADNATADGRAKNRRVDVMIPKQE 493 >gi|255263223|ref|ZP_05342565.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62] gi|255105558|gb|EET48232.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62] Length = 725 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 93/252 (36%), Gaps = 17/252 (6%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 ++ T + + Q + Q SL + + + Sbjct: 470 EAEQQETLLAAARARLAEEQAISDEGQLRIEALNQQVAQLRTQLASLQTLLDVASEQDAA 529 Query: 161 TDLE-KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 +D+E +++ + N L +++E+ + ++ + + + L ++ + Sbjct: 530 SDVEIQALGAQLNAALARVAQEQRKRAELEEAERKRLEAEAQDLERYRSEFFGQLRDLLE 589 Query: 220 TRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 + G+ I + +F S+ + K+ +L VI + Sbjct: 590 GQDGVRIEGDRFVFASEVLFRPGSADLSDAGRDEIAKVAGILRGVASEIPPSINWVIRVD 649 Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA--S 324 GHTD +P + + +NW LS RA S ++ G+ +R++ +GF ++ S Sbjct: 650 GHTDNTPLSGLGQFANNWELSQARALSVVLYMVNFLGIPPNRLAA-NGFGQYQPVTNGDS 708 Query: 325 DPMNSANRRIDI 336 D + NRRI++ Sbjct: 709 DQARAQNRRIEL 720 >gi|254452952|ref|ZP_05066389.1| OmpA/MotB [Octadecabacter antarcticus 238] gi|198267358|gb|EDY91628.1| OmpA/MotB [Octadecabacter antarcticus 238] Length = 668 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 99/269 (36%), Gaps = 23/269 (8%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 ++S D + + + QR + + + E + + Sbjct: 405 TQTSVAAADSDRQAALLALANNALTQEQALSADNQRQVALLNEQVAALRGEMGRLQALLN 464 Query: 151 SEKGKDLCKSTDLE---KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 E D+ + +E +++N L + ++L +R+ A ++ S + Sbjct: 465 LENEADVTANVQIETLTQNLNTAMARALLAERRARVLEDAELERMAAEAVELERYRSDFL 524 Query: 208 ADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--- 262 +++ VL + G+ I + +F++ ++ + + K+ +L Sbjct: 525 --GLLRNVLEDV--DGVRIEGDRFVFSSEVLFEQGAARLSADGQREIAKVAAILRDVAGD 580 Query: 263 -----TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 VI + GHTD P +NW LS RA S ++ + DR++ +G Sbjct: 581 IPESIDWVIRVDGHTDNVPLSGAGEFANNWELSQARALSVVLYMVNFLAIPPDRLAA-NG 639 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDR 341 F ++ D + NRRI++ + +R Sbjct: 640 FGQYQPINLEDTTEARAQNRRIELKLTER 668 >gi|193212466|ref|YP_001998419.1| OmpA/MotB domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085943|gb|ACF11219.1| OmpA/MotB domain protein [Chlorobaculum parvum NCIB 8327] Length = 232 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 20/230 (8%) Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 K++ + + S + + C+++ G + I + Sbjct: 8 KKFSKPAALLLLASTATVTTGCQSTTNAGRGAGIGATSGAVIGGIIGSRSGSWAQGALIG 67 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + + D K + + V E GI + + D +F +S Sbjct: 68 AAIGGAGGAIIGDYMDKQAEEIRQEVG-----NADVERVGEGIRV-VFDT--GLLFSTNS 119 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S P + ++ + VL + + + GHTD+ N LS RA S +L Sbjct: 120 STLNPNSRYNIENLARVLNRYPDTNVVVEGHTDSI---GSEATNQVLSERRAESVVSLLR 176 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV-----EDRQG 343 GV +R++ + G+ R ++ NRR+++L+ RQ Sbjct: 177 AYGVYGNRLTAV-GYGETRPVATNETEMGRRQNRRVEVLIYANNELKRQA 225 >gi|224532213|ref|ZP_03672845.1| flagellar motor apparatus [Borrelia valaisiana VS116] gi|224511678|gb|EEF82084.1| flagellar motor apparatus [Borrelia valaisiana VS116] Length = 260 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 18/166 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIIVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 + +QKI VL+ I GHTD + ++NW LS R+ + + Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKNNWELSTARSVNMLEHILN 202 Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V + +++GF R D + NRRIDIL+ Sbjct: 203 YLDQSNVKSIENKFEVAGFGGSRPIATDDTPEGRAYNRRIDILITT 248 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73 IKK + D + + Y D +T+L+ FF+ M+ +N ++ + + F G Sbjct: 5 IKKPLKCD---EGSPDYMVTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60 >gi|206602390|gb|EDZ38871.1| Putative OmpA family protein [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 97/234 (41%), Gaps = 15/234 (6%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 + Q L + + +Q ++L SE K+ D++ + Sbjct: 34 DSAQMSLQNALNDENLKQAAPEQLNKASDALKHASELLKNGAPKKDVDHYVYLATQRIKI 93 Query: 177 PLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVL---FETTRTGILISIIDQR 232 KEK ++++ K+ +I + + + + +L + T G+++++ Sbjct: 94 AEQKEKAAELQKEIKKASAHRDQIMLEANQAKIERLKRELLKMKAKETNRGLVLTL---- 149 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + P + ++K+ E + + + I G+TD++ A N +LSL R Sbjct: 150 GNVLFDLNKADLKPGGMRTIKKLAEFMQSDPKRNVMIEGYTDST---GTAAYNEKLSLKR 206 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 A S L+ G++ RI G+ ++ + NRR++I++ D +G Sbjct: 207 AESVRDALVNDGINPQRIV-TKGYGPKYPIASNKTADGRQQNRRVEIVISDEKG 259 >gi|163745692|ref|ZP_02153052.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45] gi|161382510|gb|EDQ06919.1| hypothetical protein OIHEL45_08875 [Oceanibulbus indolifex HEL-45] Length = 645 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 89/242 (36%), Gaps = 16/242 (6%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + + + + + ++ N + ++ +S+ Sbjct: 400 QAEQTLAEEKAVSAEAQRQTELLNQQVAELRAQLGNLQALLDDAVARDAANSVELQSLGS 459 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS-- 227 E N L ++ E+ + + + ++ S L+ ++ + + G+ I Sbjct: 460 ELNTALARVAAEERRRAEMEAAERKRLEEESKDLAQYRSEFFGRLRNLLGNQEGVRIEGD 519 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHTDASPFRN 279 + +F + S++ + + K+ +L A VI + GHTD P Sbjct: 520 RFVFSSEVLFGQGSAVLSQDGQGEIAKVAGILRSVVDDIPAEIDWVIRVDGHTDNVPLSG 579 Query: 280 --IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 DNW LS RA S + ++ G++ DR++ +GF ++ + + NRRI Sbjct: 580 FGEFADNWELSQARALSVVKYMVNFLGIAPDRLAA-NGFGQYQPVAEGNTEAARAQNRRI 638 Query: 335 DI 336 ++ Sbjct: 639 EL 640 >gi|293605866|ref|ZP_06688236.1| OmpA family protein [Achromobacter piechaudii ATCC 43553] gi|292815653|gb|EFF74764.1| OmpA family protein [Achromobacter piechaudii ATCC 43553] Length = 216 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ + + L+G +A T I I + + Sbjct: 43 QLSTRLEEEVKQRQEETQRRETLEQALAGPLAAG-------RVTLINGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKI----GEVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L E++ + G+TD R R DNW LS Sbjct: 93 FALNSDQLQPEGREILKTLIEPLAAYLKTHDEILMVSGYTDDQQVREGNRRFADNWDLSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ GV + + F + A + + NRR++I Sbjct: 153 QRALTVTRALIDEGVPSATVFAAA-FGSEQPVASNADEEGRAKNRRVEI 200 >gi|224534343|ref|ZP_03674921.1| flagellar motor apparatus [Borrelia spielmanii A14S] gi|224514445|gb|EEF84761.1| flagellar motor apparatus [Borrelia spielmanii A14S] Length = 260 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 18/166 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIMVRMEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 + +QKI VL+ I GHTD + + NW LS+ R+ + + Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKSNWELSVARSVNMLEHILN 202 Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V+ + ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSNVTSVENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 >gi|126728270|ref|ZP_01744086.1| hypothetical protein SSE37_19807 [Sagittula stellata E-37] gi|126711235|gb|EBA10285.1| hypothetical protein SSE37_19807 [Sagittula stellata E-37] Length = 911 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 111/303 (36%), Gaps = 18/303 (5%) Query: 56 ATDDDTKKAIEQYFNPFGKNLMTAS--KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 + ++ A+ + T Q E++ ++D + + + + Sbjct: 610 SLEEKLAAALAERMTAQTTAEETRDRLAAALARQREAEQALDTQLDEAEERQLLLSQARD 669 Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ T ++ +L+ + ++ + S +++ E N Sbjct: 670 ELAQTRERASQSQLKVEALNRNVAELRRQLGELQALLDDAKARDAASEVQLQNLGSELNA 729 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQ 231 L +++E+ ++ + + L ++ + R I I Sbjct: 730 ALARVAQEERRRRVLEEEERKRLEAEKKDLEAYRSEFFGRLRQVVGDRDDIRIEGDRFVF 789 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDASPFRNIAR- 282 + +F++ S+ P + K+ +L +I + GHTD P R A Sbjct: 790 SSEVLFEQGSADLSPLGRREIAKVSNILRRLARDIPDEIDWIIRVDGHTDNVPVRGSAEF 849 Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 DNW LS RA + + ++ + G+ +R++ +GF ++ ++ + NRRI++ + Sbjct: 850 EDNWDLSQARARAVVKDMIDNYGIPPNRLAA-NGFGEYQPVNPANTAEARAQNRRIELKL 908 Query: 339 EDR 341 ++ Sbjct: 909 TEK 911 >gi|294624615|ref|ZP_06703288.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665275|ref|ZP_06730569.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601088|gb|EFF45152.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604952|gb|EFF48309.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 223 Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 21/159 (13%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGI-------LISIID----QRNTPMFDKSSSIPLP 246 ++SS L V + +T + ++++D R +F +S P Sbjct: 43 QLSSRLDAEVRQRQAEAQRRQTLEQALAAPLAAGRVTLVDGRIGIRGNVLFAFNSDELQP 102 Query: 247 ETIVVLQKIG----EVLAHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVL 299 E VL+ + + L E++ + G TD P R DNW LS RA + + L Sbjct: 103 EGREVLKSLATPLTQYLRARDEILMVSGFTDDRPVLGGNRRYADNWELSAQRALTVTRAL 162 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + GV + + F + A + + NRR++I Sbjct: 163 IAEGVPASSVFAAA-FGSQQPVDSNADEARRAKNRRVEI 200 >gi|221210851|ref|ZP_03583831.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221169807|gb|EEE02274.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 214 Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKTLEQALAGPLAAG-------RVTLVNGRIGI---AGNLL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + LA +++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPDGRELLKTLAGPLAAYLKTRDQILMVSGFADDQQVRAGNRMFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|206562551|ref|YP_002233314.1| hypothetical protein BCAM0690 [Burkholderia cenocepacia J2315] gi|198038591|emb|CAR54550.1| putative outer membrane protein-OmpA family [Burkholderia cenocepacia J2315] Length = 214 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 16/175 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + + ++ R + L + +L +A + G + I I + Sbjct: 38 GMQLQLTSKLEEAVRARQLEAQQRKSLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + LA E++ + G D R DNW LS Sbjct: 92 FALNSDQLQPAGRDLLKTLAVPLATYLKTRDEILMVSGFADDQQVHAGNRLFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|172059479|ref|YP_001807131.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171991996|gb|ACB62915.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 316 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++TL+ I G+ + G+L + R F+ S+ P+ Sbjct: 169 EAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 225 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ L+ + I GHTD N LS RA + L+ + Sbjct: 226 RQILDQMAAALSKLQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQ 282 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 283 QMT-TTGVGPDQPIAPNDTAEGRARNRRIE 311 >gi|89070721|ref|ZP_01157983.1| flagellar motor protein [Oceanicola granulosus HTCC2516] gi|89043679|gb|EAR49884.1| flagellar motor protein [Oceanicola granulosus HTCC2516] Length = 1022 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 100/310 (32%), Gaps = 31/310 (10%) Query: 51 MWIINATDDDTKKAIEQYFNPFGKNLMT----ASKGIFDEQNPPERSSQNKIDLSIDEHI 106 M + T ++ ++A+ A + D Q + L + I Sbjct: 725 MAALEQTTEEEREALRARLAEAVAARDAARQLADSRLTDLQRRDALLATANAALEGEAAI 784 Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 + + Q + + ++ L + + E N + ++ + Sbjct: 785 SAEAQREIALLNEQVTRLRNQVGSLQALLDVAEDEDRANQVQFEALGAQLNNALARAAAE 844 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + + + A + ++ LQ L L+ R G+ I Sbjct: 845 ERRRRELEEAERRRLEEEAARLEQDLQQFRSDFFGQLRQLLEG-----------REGVQI 893 Query: 227 --SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASP 276 + +F S+ + + ++L VI + GHTD P Sbjct: 894 AGDRFVFSSEVLFAPGSATLSNAGRAQIASVADLLRDIADDIPDGIDWVIRVDGHTDDLP 953 Query: 277 FRNI--ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSAN 331 DNW LS RA S + + G DR++ +GF H+ I D +AN Sbjct: 954 LSGTGEYADNWELSQARALSVVRYMEDFLGFPPDRLAA-NGFGEHQPLIDEDTEEARAAN 1012 Query: 332 RRIDILVEDR 341 RRI++ + +R Sbjct: 1013 RRIELKLTER 1022 >gi|298530630|ref|ZP_07018032.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510004|gb|EFI33908.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 241 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 +D T +E + + + ++++ R++DL + + + Sbjct: 53 QQDTGFLTPKTAGRLPDEFVIIEDVLENPWEILEKEDRIKDLLFPEEELPPEISKSTLEE 112 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 + GI + + +F + + P+ +L ++ ++ +++ G+TD Sbjct: 113 NLEILMRPEGIALMMT---GELLFPFAETRLQPQARQILDQVIPLVKAWPAPVNVAGYTD 169 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSAN 331 P I DN+ + +RA + + L+ + V + R+ +S + H ++ + N Sbjct: 170 NIP--GIHMDNYEFAAERAMAVMEYLLINDVKQQRL-SVSAYGEHFPVGDNETEEGRARN 226 Query: 332 RRIDILVE 339 RR++IL++ Sbjct: 227 RRVEILLK 234 >gi|118588929|ref|ZP_01546336.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614] gi|118438258|gb|EAV44892.1| hypothetical protein SIAM614_12793 [Stappia aggregata IAM 12614] Length = 533 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 8/145 (5%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 V+ + E ++ G I + R FD +++ PE ++++++ + L Sbjct: 384 EDATIDTVSAQLAGLEGLEISQAGPAIML---RMRAQFDVAAATLRPEFQLLVEQVSQTL 440 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 I + GHTD+ P RN R NW LS++RA + V+ + R+ ++ G Sbjct: 441 DQVDGEILVVGHTDSDPIRNNPRFPTNWHLSVERAKAVAAVMESVLQTPGRV-QVEGRGA 499 Query: 318 HRLKIASDPMN--SANRRIDILVED 340 + + NRR+++ ++ Sbjct: 500 DEPIAPNTSKEGKALNRRVEVFLKP 524 >gi|91776019|ref|YP_545775.1| OmpA/MotB [Methylobacillus flagellatus KT] gi|91710006|gb|ABE49934.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 214 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR+++ +++ + + +T + +SI + F + P Sbjct: 69 KRMEEQKRQMEEATKDTGVE------VSQTEDNQLKLSI---PSDISFASGKADIEPNFR 119 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VVL L ++ ++I GHTD + I LS++RA + L+ G++ R Sbjct: 120 VVLDNFATTLKNNPNTLVTIIGHTDNTGSDAINNP---LSVNRAANTRDYLIARGIAASR 176 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + I G +++D + NRR++I V Sbjct: 177 FT-IDGRGSREPLVSNDTPANRAKNRRVEIFV 207 >gi|189347037|ref|YP_001943566.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245] gi|189341184|gb|ACD90587.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245] Length = 229 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 10/133 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D V+G E GI + + D +F S+ + ++++ ++ + + Sbjct: 87 DRDVEGATVERMGEGIRV-VFDS--GILFSTGSATITATSRDNIERLARIINRYDDTNVV 143 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD N LS RA + +L GV R+S + G+ R +++ Sbjct: 144 IEGHTDTV---GNEESNQLLSEHRAEAVSNLLKAYGVYGSRLSPV-GYGESRPVASNETE 199 Query: 328 NSA--NRRIDILV 338 + NRR++IL+ Sbjct: 200 SGRRLNRRVEILI 212 >gi|261417146|ref|YP_003250829.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373602|gb|ACX76347.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326585|gb|ADL25786.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 232 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +P ++ L L + + I + GHT + A N +LS DRA S Sbjct: 124 FKAGSAELVPSSLKTLNAAIAGLKRNPKAKIEVEGHTSSD---GSAELNQQLSEDRANSV 180 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 +++ G+ DR++ + G+ R K +++ ANRRI++ V + Sbjct: 181 RNYMIEQGIDADRVTAV-GYGPSRPKGDNSTEAGRRANRRIELKVLN 226 >gi|237752655|ref|ZP_04583135.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430] gi|229376144|gb|EEO26235.1| motility protein MotB [Helicobacter winghamensis ATCC BAA-430] Length = 233 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG---VLFETTRTG 223 + K + P + K ++ + ++++ S ++ N + V E G Sbjct: 37 LEKGSQSQINPPAPIKATPIETQVEMENVLNIFGSLITDYNEVNRISNGPSVELEEAERG 96 Query: 224 ILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRN- 279 ++I I +F S+ P I L+++ L + + ++ GHTD P R Sbjct: 97 VIIRI---PEELLFATGSAELTNPSGIAFLKRLSLELLRMPKAVLVKAIGHTDNVPMRAN 153 Query: 280 -IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 + DN LS+ R + ++L+K G+ ++RI G +D + + NRR+D+ Sbjct: 154 AVFADNLELSVARGVNVAELLLKQGLEKNRILG-GGEGEFSPIANNDIPALRAKNRRVDL 212 Query: 337 LV 338 V Sbjct: 213 YV 214 >gi|126440077|ref|YP_001060632.1| ompA family protein [Burkholderia pseudomallei 668] gi|126219570|gb|ABN83076.1| ompA family protein [Burkholderia pseudomallei 668] Length = 310 Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 220 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305 >gi|113867012|ref|YP_725501.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Ralstonia eutropha H16] gi|113525788|emb|CAJ92133.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Ralstonia eutropha H16] Length = 308 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S + +L + + VLAH + + GHTD++ N LS RA + Sbjct: 207 FETDSDVLSAAARPLLDRAAKAVLAHPDWRLRVEGHTDST---GGDARNQPLSERRAAAV 263 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L +GV DR+ G+ +++D + NRR+++ Sbjct: 264 RRYLESAGVPADRLDA-KGYGATHPLMSNDTPFGRAQNRRVEL 305 >gi|167589926|ref|ZP_02382314.1| hypothetical protein BuboB_31618 [Burkholderia ubonensis Bu] Length = 215 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A+K++++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAIKQRQQEAQQRKTLERALAGPLAAG-------RVTLVNGRIGI---AGNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L+ E++ I G D R DNW LS Sbjct: 92 FALNSDQLQPEGKELLKTLAGPLSAYLKTRDEILMISGFADDQQVHAGNRLFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + + +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRAFIDAGVPAASVFAAA-FGSEQPVSSNADDAGRAKNRRVEIAPVPRK 205 >gi|83941363|ref|ZP_00953825.1| flagellar motor protein [Sulfitobacter sp. EE-36] gi|83847183|gb|EAP85058.1| flagellar motor protein [Sulfitobacter sp. EE-36] Length = 582 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 16/192 (8%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +S+ + N L ++ E+ K + + + + L ++ + + G+ Sbjct: 392 QSLGSDLNTALARVAAEERRRAKLEAAERARLEAETKNLEQYRSEFFGRLRALLGNQEGV 451 Query: 225 LIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISIRGHTDA 274 I + +F ++ + + K+ +L VI + GHTD Sbjct: 452 RIEGDRFVFSSEVLFPPGAATLSADGRGEIAKVAGILRNIAADIPPEIDWVIRVDGHTDN 511 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA- 330 P + DNW LS RA S + ++ G++ +R++ +GF ++ + + Sbjct: 512 QPLSGLGEFADNWELSQARALSVVKYMINFLGIAPERLAA-NGFGQYQPVARGNTEAARA 570 Query: 331 -NRRIDILVEDR 341 NRRI++ + +R Sbjct: 571 QNRRIELKLTER 582 >gi|311695725|gb|ADP98598.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 269 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 97/248 (39%), Gaps = 22/248 (8%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN- 168 D ++ + + S +Q ++ L R ++ + ++E + Sbjct: 25 PKDNQMVDEAKAAYEDIRTDPDVARSGDRQLRSARDQLARAERLLEEGASTAEIEHAAYL 84 Query: 169 -------KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF---E 218 E L ++ A +R+K L+ A+ + + A + + + E Sbjct: 85 ANRHAEIAREQAERAKLQQQINSAEERRKELELQARSAEAQAAQQEAAELRRQMEAMQAE 144 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277 T G+++++ D +FD + + P + ++ E +A + + G+TD++ Sbjct: 145 QTDRGMVLTLGD----VLFDLNRAELKPAGETTVGRLAEFMAEYENRRVRVEGYTDST-- 198 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N +LS RA + + LM G++ RI + GF ++ NRR++ Sbjct: 199 -GAESYNQQLSERRAEAVREALMDRGINRARIE-VQGFGEQYPVATNETPAGRQQNRRVE 256 Query: 336 ILVEDRQG 343 I++ D G Sbjct: 257 IVISDADG 264 >gi|15594625|ref|NP_212414.1| flagellar motor protein MotB [Borrelia burgdorferi B31] gi|195941366|ref|ZP_03086748.1| flagellar motor protein MotB [Borrelia burgdorferi 80a] gi|216264425|ref|ZP_03436417.1| flagellar motor apparatus [Borrelia burgdorferi 156a] gi|218249216|ref|YP_002374803.1| flagellar motor apparatus [Borrelia burgdorferi ZS7] gi|221217732|ref|ZP_03589200.1| flagellar motor apparatus [Borrelia burgdorferi 72a] gi|223888999|ref|ZP_03623590.1| flagellar motor apparatus [Borrelia burgdorferi 64b] gi|224533159|ref|ZP_03673759.1| flagellar motor apparatus [Borrelia burgdorferi WI91-23] gi|224533695|ref|ZP_03674283.1| flagellar motor apparatus [Borrelia burgdorferi CA-11.2a] gi|225549020|ref|ZP_03769995.1| flagellar motor apparatus [Borrelia burgdorferi 94a] gi|225550090|ref|ZP_03771050.1| flagellar motor apparatus [Borrelia burgdorferi 118a] gi|226320581|ref|ZP_03796141.1| flagellar motor apparatus [Borrelia burgdorferi 29805] gi|226321598|ref|ZP_03797124.1| flagellar motor apparatus [Borrelia burgdorferi Bol26] gi|1165265|gb|AAA85604.1| MotB [Borrelia burgdorferi] gi|1185054|gb|AAB58963.1| flagellar motor apparatus [Borrelia burgdorferi] gi|2688186|gb|AAC66668.1| flagellar motor rotation protein B (motB) [Borrelia burgdorferi B31] gi|215980898|gb|EEC21705.1| flagellar motor apparatus [Borrelia burgdorferi 156a] gi|218164404|gb|ACK74465.1| flagellar motor apparatus [Borrelia burgdorferi ZS7] gi|221192409|gb|EEE18628.1| flagellar motor apparatus [Borrelia burgdorferi 72a] gi|223885815|gb|EEF56914.1| flagellar motor apparatus [Borrelia burgdorferi 64b] gi|224511886|gb|EEF82287.1| flagellar motor apparatus [Borrelia burgdorferi WI91-23] gi|224512988|gb|EEF83351.1| flagellar motor apparatus [Borrelia burgdorferi CA-11.2a] gi|225369202|gb|EEG98655.1| flagellar motor apparatus [Borrelia burgdorferi 118a] gi|225370246|gb|EEG99684.1| flagellar motor apparatus [Borrelia burgdorferi 94a] gi|226232787|gb|EEH31540.1| flagellar motor apparatus [Borrelia burgdorferi Bol26] gi|226234000|gb|EEH32721.1| flagellar motor apparatus [Borrelia burgdorferi 29805] gi|312147980|gb|ADQ30639.1| flagellar motor apparatus [Borrelia burgdorferi JD1] gi|312149596|gb|ADQ29667.1| flagellar motor apparatus [Borrelia burgdorferi N40] Length = 260 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 22/168 (13%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIVVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGEV---LAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 E +QKI L+ I GHTD + + NW LS R+ + + Sbjct: 143 ENRDSIQKIASFIGFLSPRGYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVNMLEHILN 202 Query: 298 VLMKSGVSEDRI---SKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V RI ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSDV--KRIENNFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73 + + + Y D +T+L+ FF+ M+ +N ++ + + F G Sbjct: 4 RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60 >gi|311695446|gb|ADP98319.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 218 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G R G I ++ FD + S P L+ + VL + +I I G Sbjct: 90 LEGTGVRVVRNGDEIELV-MPGNITFDLNESSIKPSFSGTLESVALVLKEYDKTIIQIEG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD+ N LS RA S L+ G+ R ++ G+ ++D Sbjct: 149 HTDS---SGSDSYNQLLSERRASSVRDFLLNQGIEPKR-TRAVGYGERYPVASNDTAAGR 204 Query: 331 --NRRIDILVEDRQ 342 NRR+++ + Q Sbjct: 205 EQNRRVELTLVPMQ 218 >gi|186472491|ref|YP_001859833.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184194823|gb|ACC72787.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 166 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N G+ T+ G+ + + +F+ + S P+ L ++ VL + + + I Sbjct: 32 NKQAGIEVTQTKEGVQVRL---PEKVLFNFNESSLRPDAATALSRVVVVLNRTHKPMIIE 88 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD N +LS RA S L + G+S RI+ + G+A R ++ Sbjct: 89 GHTDNV---GTREYNQQLSEARAKSVADELERRGISASRIT-LKGYAFDRPVADNNTPEG 144 Query: 328 NSANRRIDILVE 339 + NRR +I+V Sbjct: 145 RARNRRTEIVVM 156 >gi|295681046|ref|YP_003609620.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1002] gi|295440941|gb|ADG20109.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1002] Length = 444 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 8/141 (5%) Query: 202 TLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 LS L+ D I +G VL E + + R +F S PE VL ++ + +A Sbjct: 306 RLSILLKDEIARGQVLVEENGSSSRVVF---RGDYVFLPGQSRIRPELDPVLSRVAQEVA 362 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +++ GHTD P DN LS RA V+ GV RI I G + Sbjct: 363 RVGGKVTVTGHTDNQPIHTAEFPDNQVLSEKRAAFVADVMKAHGVPAIRIVAI-GKGDIQ 421 Query: 320 LKIASDP--MNSANRRIDILV 338 + S NRR+++ V Sbjct: 422 PVADNTTAEGRSRNRRVEVFV 442 >gi|310823400|ref|YP_003955758.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309396472|gb|ADO73931.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 611 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282 I I + +F+ + ++ +L ++ VL + + I GHTD Sbjct: 465 RIRI---KGNILFETGQAKIQKQSFKLLDEVASVLRRNPTLGPVLIEGHTDNV---GSRN 518 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA + L G+ R+S GF + +D + NRR++ Sbjct: 519 YNVDLSQRRAKAVLDYLAGKGIDRKRLSS-KGFGFDQPIATNDTPLGRAKNRRVE 572 >gi|300114861|ref|YP_003761436.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113] gi|299540798|gb|ADJ29115.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113] Length = 249 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + D +++ + L+ + ++ + + D + FD S P + Sbjct: 87 MNDQQREMEAALAEERRRHQLEIQRLQDESLKL-----DIPSEVSFDHDSDALKPAFLPT 141 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L KI +VL + V+ + GHTD++ + N LSL RA + L + G+ R+ Sbjct: 142 LDKIADVLKKYNKTVVHVIGHTDST---GAEKYNLDLSLRRAGNVALYLERQGIPSQRL- 197 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 I G + + ++ + NRR++I+++ Sbjct: 198 SIYGRGENEPRASNATASGRQLNRRVEIILKP 229 >gi|124514812|gb|EAY56324.1| putative OmpA family protein [Leptospirillum rubarum] Length = 265 Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 103/246 (41%), Gaps = 26/246 (10%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD--LEKSINKEENY 173 G + +L++ L N+ E+ K + +K D K L+ K++ Sbjct: 22 GCASAPPHDSKLDSAQMSLQNALNDENLKQAAPEQLDKASDALKHARELLKNGAPKKDVD 81 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISS------TLSGLVADNIVKGVLFE-------TT 220 L+ ++I ++K++ +L K+I + ++ + E T Sbjct: 82 HYVYLATQRIKIAEQKEKAAELQKEIKKASAHRDQIMLEANQAKIEHLKRELLKMKAKET 141 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 G+++++ +FD + + P + ++K+ E + + + I G+TD++ Sbjct: 142 NRGLVLTL----GNVLFDLNKADLKPGGMRTIKKLAEFMQSDPKRNVMIEGYTDST---G 194 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 A N +LSL RA S L+ G++ RI G+ ++ + NRR++I+ Sbjct: 195 TAAYNEKLSLKRAESVRDALVNDGINPQRIV-TKGYGPKYPIASNKTADGRQQNRRVEIV 253 Query: 338 VEDRQG 343 + D +G Sbjct: 254 ISDEKG 259 >gi|254254076|ref|ZP_04947393.1| Outer membrane protein [Burkholderia dolosa AUO158] gi|124898721|gb|EAY70564.1| Outer membrane protein [Burkholderia dolosa AUO158] Length = 616 Score = 89.2 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 8/113 (7%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD + P + + + E++ I + G+TD N RLS RA Sbjct: 502 SLFDSGKAQLKPGSNRAMVRAIEMINAHPGKRIVVAGYTDN---AGNPDSNLRLSRARAQ 558 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + L+ + G+ + I G+ R ++D + NRR++I + Sbjct: 559 AVRDWLIDASGIPATQF-AIQGYGDTRPIASNDAPDGRARNRRVEITLVPDTA 610 >gi|256819872|ref|YP_003141151.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581455|gb|ACU92590.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 360 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 I T +FD S+ P+ +L I ++ + + + GHTD + N Sbjct: 245 QINLYAKTILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNT---GTPEHNL 301 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342 +LS DRA + Q L + GVS+ R+ G+ R +++ NRR++I +V+D Q Sbjct: 302 KLSQDRADAIKQYLSRHGVSKKRLDA-KGYGQTRPIESNETERGKEINRRVEINVVKDNQ 360 >gi|221197269|ref|ZP_03570316.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221203942|ref|ZP_03576960.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221176108|gb|EEE08537.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221183823|gb|EEE16223.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 214 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARQQEAQQRKTLEQALAGPLAAG-------RVTLVNGRIGI---AGNLL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + LA +++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPDGRELLKTLAGPLAAYLKTRDQILMVSGFADDQQVRAGNRMFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDEGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|114778645|ref|ZP_01453461.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1] gi|114551110|gb|EAU53671.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1] Length = 226 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 11/152 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + K+ + L A+ + E + + I++ + + FD +S+ P L Sbjct: 79 MDKQQAEFNRQLAAEQQAHQIEVERLQNENLKITMNSEIS---FDYNSAQLKPAFTDTLN 135 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K+ ++L I I GHTD R + N +LS RA + L GV RI Sbjct: 136 KVADILKRYPRSTIRITGHTDN---RGSTQYNQQLSEQRAQAVKWYLSDRGVDPRRIIA- 191 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G + + +D NRR+++L+ Q Sbjct: 192 EGRGELQPRATNDTEAGRQLNRRVEMLIVPDQ 223 >gi|116622076|ref|YP_824232.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116225238|gb|ABJ83947.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 605 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 14/245 (5%) Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 K++ ++ D + + E + N Q+ +N R + + Sbjct: 354 KLENEARLASARSETDRLKRENDAQATAALAETDRLKRENDAQATAAQNETDRLKRQNEA 413 Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + E K EN +K K + K + L + + Sbjct: 414 QALAAQNEADRLKAENEAQRVAAKAASDRAAGDKAQAEAEK---AQLRAQLLVQFNTVLQ 470 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 T G+++++ D +FD L ++ +LA + + G+TD+ Sbjct: 471 TRDTARGLIVNMSD----VLFDTGKFTLRAGAREKLARVAGILAGHPGLQMQVEGYTDSV 526 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 N LS RA S L +G+ ++ G ++D NRR Sbjct: 527 ---GSETSNQLLSERRATSVRDYLTSAGIPPASVTA-KGLGETLPVASNDNAAGRQQNRR 582 Query: 334 IDILV 338 ++++V Sbjct: 583 VELVV 587 >gi|300694450|ref|YP_003750423.1| transmembrane protein, ompa/motb motif [Ralstonia solanacearum PSI07] gi|299076487|emb|CBJ35807.1| putative transmembrane protein, OmpA/MotB motif [Ralstonia solanacearum PSI07] Length = 215 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSKLADEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L E++ + G D R DNW LS Sbjct: 93 FALNSDQLQPEGRELLKSLAGPLSAYLKSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + D + NRR++I Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNTDDEGRAKNRRVEI 200 >gi|194099378|ref|YP_002002478.1| hypothetical protein NGK_1853 [Neisseria gonorrhoeae NCCP11945] gi|239999626|ref|ZP_04719550.1| hypothetical protein Ngon3_09112 [Neisseria gonorrhoeae 35/02] gi|240014801|ref|ZP_04721714.1| hypothetical protein NgonD_09194 [Neisseria gonorrhoeae DGI18] gi|240017250|ref|ZP_04723790.1| hypothetical protein NgonFA_08817 [Neisseria gonorrhoeae FA6140] gi|240081113|ref|ZP_04725656.1| hypothetical protein NgonF_07349 [Neisseria gonorrhoeae FA19] gi|240113325|ref|ZP_04727815.1| hypothetical protein NgonM_07083 [Neisseria gonorrhoeae MS11] gi|240116327|ref|ZP_04730389.1| hypothetical protein NgonPID1_08846 [Neisseria gonorrhoeae PID18] gi|240118614|ref|ZP_04732676.1| hypothetical protein NgonPID_09178 [Neisseria gonorrhoeae PID1] gi|240121324|ref|ZP_04734286.1| hypothetical protein NgonPI_06069 [Neisseria gonorrhoeae PID24-1] gi|240124157|ref|ZP_04737113.1| hypothetical protein NgonP_09504 [Neisseria gonorrhoeae PID332] gi|240126226|ref|ZP_04739112.1| hypothetical protein NgonSK_08443 [Neisseria gonorrhoeae SK-92-679] gi|240128827|ref|ZP_04741488.1| hypothetical protein NgonS_09423 [Neisseria gonorrhoeae SK-93-1035] gi|293398468|ref|ZP_06642646.1| hypothetical protein NGNG_01123 [Neisseria gonorrhoeae F62] gi|193934668|gb|ACF30492.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|291610939|gb|EFF40036.1| hypothetical protein NGNG_01123 [Neisseria gonorrhoeae F62] gi|317164880|gb|ADV08421.1| hypothetical protein NGTW08_1460 [Neisseria gonorrhoeae TCDC-NG08107] Length = 225 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + G E R G I ++ + F S+ L + L + ++I Sbjct: 86 QNLAGTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 144 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + + A +N LS RA + L GV+ R++ + G+ H ++ Sbjct: 145 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 200 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 201 GRAQNRRVEILINPDQ 216 >gi|330824057|ref|YP_004387360.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|329309429|gb|AEB83844.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 912 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E +K ++R + + +TL +A + G T I I + + Sbjct: 738 GMQMELAERLKTEQRQRAEQARRLTTLEQALAGPLAAG---RVTLQDGRIGIS---GSVL 791 Query: 237 FDKSSSIPLPETIVVLQKI----GEVLAHSTEVISIRGHTDASPFRNIA-----RDNWRL 287 F +S PE +L+ + L E++ + G TD P R DNW L Sbjct: 792 FAFNSDELQPEGRQLLRSLSAPLAAYLRERGEILMVSGFTDDRPMRGGGGNARFADNWEL 851 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVEDRQG 343 S RA + + L+ G+ ++ + A + +D + NRR+++ R Sbjct: 852 SAQRALTVTRALIDEGIPSAQVFAAAFGAEQAVASNADAEGRARNRRVEMAPMPRPA 908 >gi|167571440|ref|ZP_02364314.1| ompA family protein [Burkholderia oklahomensis C6786] Length = 308 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 21/285 (7%) Query: 64 AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 A+ P + A G+ + P + + + Sbjct: 27 ALADNVGPATVTPIDAG-GVPVKSTPLAAPAPAAASGAGGGATVSSPPPANATPGQVVAG 85 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + + + + + D + D+ + ++ K L +SK ++ Sbjct: 86 GKVADEATKAAVLQRLRDTYGAANVVDQIEVGDVATPPNWSANVQKLIGPQLKQISKGQL 145 Query: 184 LAMKRK----------KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 + + Q LA +++ L+ I G+ + G+L + R Sbjct: 146 KIDGTQIDVKGEVHNEAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRT 203 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 F+ S+ P+ +L ++ LA + + I GHTD N LS RA Sbjct: 204 IE-FETGSATLTPQGRAILDQMAGALAKMSSRTVEIIGHTDN---SGNRASNIALSQARA 259 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 + L+ G++ +++ +G + ++D + NRRI+ Sbjct: 260 DAVKGYLVAKGIASQQLT-TTGVGPDQPIASNDTNDGRARNRRIE 303 >gi|330502930|ref|YP_004379799.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328917216|gb|AEB58047.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 267 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + + + + L +R + AK +S + + + T Sbjct: 86 AEIARQHSDISLNHERAAKLELERQRLQLTLREAKLLSVQQHNGWLEEQMVSLATSETER 145 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 G+++++ D +FD + P + K+ + L + + I G+TD + A Sbjct: 146 GLVMTLGDM----LFDAGRADLQPAANRTVLKLVQFLQINPQRRVRIEGYTDNT---GDA 198 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 +N LS RA + +L+ GV RI ++ G+ AS + NRR++I+ Sbjct: 199 AENLELSRARAQAVADLLVDLGVDAKRI-QVVGYGVDFPVAENASARGRAQNRRVEIVFS 257 Query: 340 DRQG 343 D +G Sbjct: 258 DERG 261 >gi|114327745|ref|YP_744902.1| hypothetical protein GbCGDNIH1_1081 [Granulibacter bethesdensis CGDNIH1] gi|114315919|gb|ABI61979.1| chemotaxis motB protein [Granulibacter bethesdensis CGDNIH1] Length = 350 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 125/347 (36%), Gaps = 24/347 (6%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 +++ + + + + + V++ LV + A T E + + L Sbjct: 5 RRRNTSGENLHVWPGYVDALSTLLMVIIFVLLVFVLAQAFLSYTLAGKEHRLDELNRQLA 64 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTNQKKQYQRLENNIFYLSN 136 S+ EQ + + + L + + + L+ + +Q RLE+ + Sbjct: 65 IISRQFALEQQHSTQLAHSLERLRNEAAGKEADMARLRTQTVVLAEQKSRLESQLAGRDQ 124 Query: 137 SQQSEHCKNSLTRDSEKGKDLC--KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + K + + KD + D ++I ++ L + + + + + D Sbjct: 125 DVKRAEAKLAELDQTIHSKDTALDRLRDDLEAIRRQLAAVQSALDASEKESQSKDRTIAD 184 Query: 195 LAKKISSTLSGLVADNIVK-----GVLFETTRTGILISIIDQ----RNTPMFDKSSSIPL 245 L +++ L+ V + G L E I ++ ++ +F ++ Sbjct: 185 LGMRLNVALAEKVEELKKYRSEFFGKLREVLAGRPGIQVVGDRFVFQSDVLFPSGNADLT 244 Query: 246 PETIVVLQKIGEVLAHS-----TEV---ISIRGHTDASPFRNIAR-DNWRLSLDRAYSAY 296 + ++ I L V + + GH D N NW LS RA + Sbjct: 245 EQGRQQVKDIAAALIQLSKKFPPNVNWLLRVDGHADRQKMVNGKFASNWELSAQRAINVA 304 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 ++L++ GV + +S FA ++ D + NRRI++ + DR Sbjct: 305 RLLIEQGVPGNHVSA-DAFADYQPVSQGDSEADLAKNRRIELRLTDR 350 >gi|107027050|ref|YP_624561.1| hypothetical protein Bcen_4708 [Burkholderia cenocepacia AU 1054] gi|116691753|ref|YP_837286.1| hypothetical protein Bcen2424_3655 [Burkholderia cenocepacia HI2424] gi|170736247|ref|YP_001777507.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|254248991|ref|ZP_04942311.1| Flagellar motor protein [Burkholderia cenocepacia PC184] gi|105896424|gb|ABF79588.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116649753|gb|ABK10393.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] gi|124875492|gb|EAY65482.1| Flagellar motor protein [Burkholderia cenocepacia PC184] gi|169818435|gb|ACA93017.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 214 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 16/175 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + + ++ R + L + +L +A + G + I I + Sbjct: 38 GMQLQLTSKLEEAVRARQLEAQQRKSLEQALAGPLAAGRVTLVNG---RIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + LA E++ I G D R DNW LS Sbjct: 92 FALNSDQLQPAGRDLLKTLAGPLATYLKTRDEILMISGFADDQQVHAGNRLFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + ++ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRAMIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|307728583|ref|YP_003905807.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307583118|gb|ADN56516.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 620 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 I+ + +F S++ P + VL E++ + + + GHTD+ N +L Sbjct: 482 IELDSMSLFRSGSAVLNPGSNRVLIGALEMIKAHPDKRVLVAGHTDSV---GTPASNLKL 538 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 S RA S L + G++ R I G+ R K + + +ANRR++I + Sbjct: 539 SEARAASVRDWLADASGIALTRF-AIQGYGDTRPKAPNSTEAGRAANRRVEITLVP 593 >gi|312130019|ref|YP_003997359.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311906565|gb|ADQ17006.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 412 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + LPE+ L ++ + L + I I GHTD AR N +LS DR Sbjct: 304 DKVYFNVGQAQILPESYEQLSQLVQYLKVNPTYKIQIEGHTDNQ---GDARANLQLSNDR 360 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 AY+ Q L++ G+ RI K G+ + +D NRR++ Sbjct: 361 AYNVRQYLIEQGIETSRI-KFKGYGSSKPVSPNDTEENRRKNRRVE 405 >gi|242281268|ref|YP_002993397.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242124162|gb|ACS81858.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 242 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 68/158 (43%), Gaps = 9/158 (5%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++++ R++DL + + + + G+ + + D MF S Sbjct: 84 LEKQNRIKDLLFPDDVLPPDMDRATLDENLKVLAKPEGVALVLTD---KLMFPLGKSELD 140 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 ++L ++ VL + ++I G+TD + N+RLS +RA + ++ G+ Sbjct: 141 ERAKILLYQLVPVLDYLGSADVNIAGYTDN--VGGMRPSNFRLSGERAMAVLTYFVEQGI 198 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 DR++ +S ++ + NRR++IL++ Sbjct: 199 MNDRLT-VSACGPTFPLYSNTTPEGRAQNRRVEILIKT 235 >gi|26990890|ref|NP_746315.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|148546893|ref|YP_001266995.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|24985904|gb|AAN69779.1|AE016614_5 OmpA family protein [Pseudomonas putida KT2440] gi|148510951|gb|ABQ77811.1| OmpA/MotB domain protein [Pseudomonas putida F1] gi|313497955|gb|ADR59321.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 270 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 20/188 (10%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + L + ++ L + L + +Q K + S ++ L ++ Sbjct: 94 EHAKLALNQERQAKLDLERQRLQLALREAKLASVQQQGKWVESQIAALASEQA------- 146 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPF 277 G+++++ D +FD S+ + K+ + L + + I G+TD++ Sbjct: 147 --DRGLVMTLGD----VLFDTGSADLKNSASRTVLKLVQFLQLNPRRVVRIEGYTDST-- 198 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 +N +LS DRA S +L+ G+ E R+ ++ G+ AS+ + NRR++ Sbjct: 199 -GAGEENLKLSRDRAQSVADMLVDLGIDEKRL-QVEGYGDQYPIEANASERGRAQNRRVE 256 Query: 336 ILVEDRQG 343 I+ D +G Sbjct: 257 IVFSDDKG 264 >gi|302670731|ref|YP_003830691.1| flagellar motor protein MotB [Butyrivibrio proteoclasticus B316] gi|302395204|gb|ADL34109.1| flagellar motor protein MotB [Butyrivibrio proteoclasticus B316] Length = 277 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 104/273 (38%), Gaps = 24/273 (8%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 +E P + Q ++ + + + S + K + + S E Sbjct: 6 EEIKPGLPAWQGTFGDLMNLLLCFFVLLFSMASMDAAKFEEVAASFSSAFSIFSGGEMAI 65 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL-----------Q 193 + L + + S+ + ++ + M +K+ + Q Sbjct: 66 GKGALIGDGVSQLTELSSYITSMGLAQAGDDADEERDAVGEMDQKELMEAAEEEQLEASQ 125 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 LA+KI + L +I V T + ++I + + +FD + I V+ Sbjct: 126 KLAEKIQAELEE---GDIEDVVSLNYTSQFVQLTI---QGSILFDSGKVEIKSDAIPVID 179 Query: 254 KIGEVL-AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSG-VSEDRI 309 K+G++L +++ + I GHTD P + + +N LS RA + + L+++ + + Sbjct: 180 KVGQILESYAGGTVDIEGHTDNVPMSSGGKYANNDELSSGRALAVFNYLVENTTLDPANL 239 Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILVED 340 +G + ++D S NRR++I + + Sbjct: 240 IH-TGRGEYDPIADNSTDEGRSRNRRVEIKIYN 271 >gi|149925995|ref|ZP_01914258.1| OmpA/MotB [Limnobacter sp. MED105] gi|149825283|gb|EDM84494.1| OmpA/MotB [Limnobacter sp. MED105] Length = 179 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S+ E L +VL++ I + GH DA A N LS +RA Sbjct: 78 FQLGSAELPAELKKQLDVFAQVLSNRPSDSPPIVVTGHADA---SGDASLNQVLSSERAK 134 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + L + GVS R+ ++ G +L ++P ANRR++I Sbjct: 135 AVKTYLTQKGVSP-RLLRVEGKGAEKLVDVNNPFAPANRRVEI 176 >gi|259417312|ref|ZP_05741231.1| OmpA/MotB domain protein [Silicibacter sp. TrichCH4B] gi|259346218|gb|EEW58032.1| OmpA/MotB domain protein [Silicibacter sp. TrichCH4B] Length = 519 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 15/152 (9%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +L+ L+ + S L + + T +LI + + F S + Sbjct: 375 QLERLSAALESELET-------GQIELDRTNDWVLIRVSEALR---FRSGSEDLTSDIDS 424 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ + L I + GHTD+ P R N +LS RA + +L + DR Sbjct: 425 LIASAAKALNAEQGPIRVVGHTDSVPMSGRGRFKSNEQLSKARAQTVADLLAAQLEAPDR 484 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I+ + G + + NRR++IL+ Sbjct: 485 IT-VEGKGPVDPIADNGTREGRARNRRVEILI 515 >gi|83718754|ref|YP_443463.1| OmpA domain-containing protein [Burkholderia thailandensis E264] gi|167621163|ref|ZP_02389794.1| OmpA domain protein [Burkholderia thailandensis Bt4] gi|257137752|ref|ZP_05586014.1| OmpA domain-containing protein [Burkholderia thailandensis E264] gi|83652579|gb|ABC36642.1| OmpA domain protein [Burkholderia thailandensis E264] Length = 311 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 22/270 (8%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 G G PP ++ ++ + QRL Sbjct: 56 LAAPGAAANGTGTGAIVSSPPPANAAPGQVVAGG----------KVADEATKAAVLQRLR 105 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + Q E N T + K I+K + K Sbjct: 106 DTYGAANVVDQIE-VGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNE 164 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +R Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 165 AQR-QQLASDMANALNPTYM--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 220 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + I GHTD N LS RA + L+ G++ Sbjct: 221 RTILDQMAGALAKMPNRTVEIIGHTDN---SGNRASNIALSQSRADAVKGYLVTKGIASQ 277 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + ++D + NRRI+ Sbjct: 278 QLT-TTGVGPDQPIASNDSADGRARNRRIE 306 >gi|289679931|ref|ZP_06500821.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5] Length = 190 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 15/173 (8%) Query: 178 LSKEKILAMKRKKRLQDLA----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 LS+E++ M +++ LA K S+ G ++ + + T G+++++ D Sbjct: 20 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDRGLVMTLGD--- 76 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + + K+ + L + + I G+TD++ +DN +LS DRA Sbjct: 77 -VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---GDRQDNLKLSKDRA 132 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 + VLM GV E RI + G+ A+ + + NRR++I+ D +G Sbjct: 133 QAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTFERGRAQNRRVEIVFSDEKG 184 >gi|313201307|ref|YP_004039965.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312440623|gb|ADQ84729.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 222 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+++ +++ +G GV T + + D + FD S P Sbjct: 73 RRMEEQKQQMEQATAGT-------GVQVSQTADN-RLKL-DIPSDISFDSGKSDIKPNFR 123 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + L + ++I GHTD + + LSL+RA A L+ GV+ R Sbjct: 124 PVLDSFAQSLVANPATKVTIVGHTDNTGTDAVNNP---LSLNRANHARDYLVTRGVASSR 180 Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + G H + SD + NRR++I V + Q Sbjct: 181 FT-TEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216 >gi|295700038|ref|YP_003607931.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295439251|gb|ADG18420.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 217 Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 20/168 (11%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 LS + +K+++ K + L+G +A T I I +F Sbjct: 44 LSNKLEHEVKQRQAETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GNVLF 93 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSLD 290 +S+ PE +L+ + L+ +++ + G TD R R DNW LS Sbjct: 94 ALNSAQLQPEGRALLKSLAGPLSAYLRASDQILMVSGFTDDQRLREGNRRFADNWELSAQ 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ G+ + + F + A + + NRR++I Sbjct: 154 RALTVTRALIDEGLPASSVFAAA-FGSEQPVSSNADESGRAKNRRVEI 200 >gi|170692926|ref|ZP_02884087.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170141924|gb|EDT10091.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 218 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 14/168 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++++ + + + + TL +A + G + I I + Sbjct: 42 GVQLELSNKLEQEVKQRQVETQRRKTLEEALAGPLAAGRVTLVNG---RIGIS---GNVL 95 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ +++ + G TD R R DNW LS Sbjct: 96 FALNSDQLQPQGRDLLKSLAGPLSAYLRASDQILMVSGFTDDQRLREGNRRFADNWELSA 155 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 RA + + L+++GV + + G A + + NRR++I Sbjct: 156 QRALTVTRALIEAGVPAPSLFAAAFGSGQPVSSNADEQGRARNRRVEI 203 >gi|161521586|ref|YP_001585013.1| hypothetical protein Bmul_5051 [Burkholderia multivorans ATCC 17616] gi|189352247|ref|YP_001947874.1| hypothetical protein BMULJ_03465 [Burkholderia multivorans ATCC 17616] gi|160345636|gb|ABX18721.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189336269|dbj|BAG45338.1| putative flagellar motor protein [Burkholderia multivorans ATCC 17616] Length = 214 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L + A++ +++ K + L+G +A T I I + Sbjct: 42 QLRSKLEEAVRARQQEAQQRKTLEQALAGPLAAG-------RVTLVNGRIGI---AGNLL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + LA +++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPDGRELLKTLAGPLAAYLKTRDQILMVSGFADDQQVRAGNRMFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPASSVFAAA-FGSEQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|218459695|ref|ZP_03499786.1| hypothetical protein RetlK5_09429 [Rhizobium etli Kim 5] Length = 91 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 257 EVLAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+ V+ + GHTD P RDNW LS RA S + L+ GV DR+ +G Sbjct: 4 EIPPEINWVLRVDGHTDNVPLGGTGRYRDNWELSSARATSVVKFLIGQGVPADRLVA-AG 62 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDR 341 F + D + NRRI++ + ++ Sbjct: 63 FGEFQPIAPGDTPEARATNRRIELKLTEK 91 >gi|262197986|ref|YP_003269195.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081333|gb|ACY17302.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 1755 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 13/140 (9%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + VK L + T I+I + F+ + + +L + +VL E Sbjct: 1615 PVENQGCVKEQLVQITDNQIIIL-----DRVYFETDKARIRSRSFALLNNVVQVLEAHPE 1669 Query: 265 --VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321 + I GHTD R N LS RA S L+++GV R+ + G+ R Sbjct: 1670 IANVRIEGHTDD---RGSDAYNLDLSDRRAASVVSFLIEAGVDPVRLQSV-GYGETRPVR 1725 Query: 322 -IASDPMNSANRRIDILVED 340 S +ANRR++ + Sbjct: 1726 ENGSREGRAANRRVEFHIVR 1745 >gi|86143203|ref|ZP_01061605.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] gi|85830108|gb|EAQ48568.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] Length = 279 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 13/182 (7%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQD-LAKKISSTLSGLVADNIVKG--VLFETTRTGI 224 ++ LSK + + K L+D + IS L + D++ + + + T + Sbjct: 89 ESTKDKMRETLSKVDQNELAQAKSLEDSMNLAISYNLKKNLDDSVGEDEDIQVDIDETVV 148 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR- 282 +I++ D +F+ S + +L+++ +V+ + + GHTD + A Sbjct: 149 MINVSD---KLLFNSGSYRVSNKADGLLKRLADVINSEPAIKVMVEGHTDDQTVKPGAYI 205 Query: 283 -DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 DNW LS++R+ + + L V ++ +G + + + + + NRR I++ Sbjct: 206 KDNWELSVERSTAIIRELQDKYNVDPAKLIA-AGRSSYLPLVDNATKEDRAKNRRTRIVI 264 Query: 339 ED 340 Sbjct: 265 LP 266 >gi|296313347|ref|ZP_06863288.1| OmpA family protein [Neisseria polysaccharea ATCC 43768] gi|296840164|gb|EFH24102.1| OmpA family protein [Neisseria polysaccharea ATCC 43768] Length = 225 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 + G + R G I ++ N F S++ L + L + ++I G Sbjct: 88 LTGTQVQVQRQGNQIKLVMPENVT-FATGSAVLSNNAQFALNTAAQTLVQYPDTTLTING 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD + + A +N LS RA + L GV+ R+ + G+ H ++ Sbjct: 147 HTDNT--GSDAVNN-PLSQHRAQAVAYYLQSRGVAASRL-AVYGYGSHMPVASNATAEGR 202 Query: 329 SANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 203 AQNRRVEILINPDQ 216 >gi|289208562|ref|YP_003460628.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288944193|gb|ADC71892.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 238 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 19/221 (8%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N+ + + N+ + +D D + + + ++ +R+ Sbjct: 23 NVIPTQGERAPDEAANANGEPARDARDTAHRDDSHAAPR----NAVYLARDDDAVSARRQ 78 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVL-------FETTRTGILISIIDQRNTPMFDKSSS 242 L + + ++ G D + + E R G +I++I F+ +S+ Sbjct: 79 HLLDEGHESVALDRVGFYMDVLTARLRQKLAGHDVEMEREGRIITLI-FPGAKAFETNSA 137 Query: 243 IPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 P+ + L +G+VL +++I GHTD+ N LS RA S + L Sbjct: 138 EIHPDMVSTLDALGQVLEEYDASLVTIAGHTDS---AGARGYNQHLSEQRALSVGRHLHD 194 Query: 302 SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 +GV E RI I G+ R +D + NRR+++ VE Sbjct: 195 NGVGEARIIAI-GYGPDRPIADNDTPHGRALNRRVELRVEP 234 >gi|119896572|ref|YP_931785.1| hypothetical protein azo0281 [Azoarcus sp. BH72] gi|119668985|emb|CAL92898.1| conserved hypothetical outer membrane protein [Azoarcus sp. BH72] Length = 214 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 16/168 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E +++ + + + + ++ L +A + G T I I + + Sbjct: 38 GVQMELASSLEAEVQKRRVEEQRREALEKALAVPLASG---RVTLANGRIGIS---GSVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + LA E++ + G TD P R+ R DNW LS Sbjct: 92 FALNSDELQPDGRQLLKSLAPPLAAYLASHDEMLMVSGFTDDRPVRDSNRQFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 RA + +VL++ GV + + F + A + NRR++ Sbjct: 152 QRALTVTRVLVEEGVPSAAVFAAA-FGQEQPVASNADADGRARNRRVE 198 >gi|83749427|ref|ZP_00946420.1| Chemotaxis motB protein [Ralstonia solanacearum UW551] gi|207738949|ref|YP_002257342.1| outer membrane protein [Ralstonia solanacearum IPO1609] gi|83723907|gb|EAP71092.1| Chemotaxis motB protein [Ralstonia solanacearum UW551] gi|206592320|emb|CAQ59226.1| outer membrane protein [Ralstonia solanacearum IPO1609] Length = 215 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSRLDQEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L+ E++ + G D R DNW LS Sbjct: 93 FALNSDQLQPEGRELLKSLAGPLSAYLRSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A D + NRR++I Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNADDEGRAKNRRVEI 200 >gi|226943639|ref|YP_002798712.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii DJ] gi|226718566|gb|ACO77737.1| outer membrane protein, OmpA/MotB family [Azotobacter vinelandii DJ] Length = 270 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 14/181 (7%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 E+ ++ + K + RLQ A+ +++ G + + G T G++ Sbjct: 92 AREHGAQRQAAERLVELEKERDRLQLALSEARLLNAEQQGEWLEEQLLGRTTTETERGLV 151 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDN 284 +++ D +FD + ++ L + + I G+TD+ + N Sbjct: 152 MTLGD----VLFDTGREELRSAATRTVVQVARFLRLNQRRVVRIEGYTDSQ---GDDQLN 204 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 LS RA S +L+ GV R+ +++G+ AS + NRR++I+ D + Sbjct: 205 LELSRGRAQSVKDMLVDLGVDAGRV-QVAGYGEAYPVAENASSQGRARNRRVEIVFSDEE 263 Query: 343 G 343 G Sbjct: 264 G 264 >gi|111115105|ref|YP_709723.1| flagellar motor protein MotB [Borrelia afzelii PKo] gi|216263787|ref|ZP_03435781.1| flagellar motor apparatus [Borrelia afzelii ACA-1] gi|110890379|gb|ABH01547.1| flagellar motor rotation protein B [Borrelia afzelii PKo] gi|215979831|gb|EEC20653.1| flagellar motor apparatus [Borrelia afzelii ACA-1] Length = 260 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 18/166 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIIVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGE---VLAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 + +QKI VL+ I GHTD + ++NW LS+ R+ + + Sbjct: 143 DNRDSIQKIASFIGVLSSRGYNFKIEGHTDNIDTDVNGPWKNNWELSVARSVNMLEHILN 202 Query: 298 VLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V + ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSNVKSIENKFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 >gi|170698903|ref|ZP_02889963.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170136156|gb|EDT04424.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 247 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++TL+ I G+ + G+L + R F+ S+ P+ Sbjct: 100 EAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 156 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ L+ + I GHTD N LS RA + L+ + Sbjct: 157 RQILDQMAAALSKLQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQ 213 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 214 QMT-TTGVGPDQPIAPNDTAEGRARNRRIE 242 >gi|325286203|ref|YP_004261993.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321657|gb|ADY29122.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 276 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 8/201 (3%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 N+LT D++ + ++ + L +S E+++ K K +LA +S L Sbjct: 66 NALTEDNDAKLISADGAVISNNVKAKMRETLKNVSPEQLMGAKTLKDSMNLA--LSHNLK 123 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + N + + +I + +F+ +S + +LQK+ +V+ Sbjct: 124 KSIGTNSLNEDEDIAIDIDDTVVMISISDKLLFNTASYNVSNKADAILQKLADVINSEPS 183 Query: 265 -VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321 + + GHTD+ DNW LS+ RA S + L K V+ +++ SG + + Sbjct: 184 IEVMVEGHTDSRSISTPKVTDNWDLSVLRATSIVRKLQTKYNVAPEKLIA-SGRSSYVPL 242 Query: 322 IASDPM--NSANRRIDILVED 340 ++D + NRR I++ Sbjct: 243 ASNDTKEDRAKNRRTRIVILP 263 >gi|319764890|ref|YP_004128827.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|330827094|ref|YP_004390397.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|317119451|gb|ADV01940.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] gi|329312466|gb|AEB86881.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 214 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 +G T+T +D + F + S P +L + E L ++ + Sbjct: 80 MQAATQGTGVTVTQTADNQLKLDIPSDISFATNRSDIQPSFRPILDRFAEGLRNNPNAEV 139 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTD++ I LSLDRA S L GVS RI + G ++D Sbjct: 140 RIIGHTDSTGNDAINDP---LSLDRATSTRNYLTARGVSGARIH-VDGRGSREPIASNDT 195 Query: 327 --MNSANRRIDILVEDRQG 343 + NRR++I + +RQG Sbjct: 196 AEGRARNRRVEIFMGERQG 214 >gi|153843472|ref|ZP_01993564.1| ATP-dependent protease La [Vibrio parahaemolyticus AQ3810] gi|149745319|gb|EDM56570.1| ATP-dependent protease La [Vibrio parahaemolyticus AQ3810] Length = 344 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L + I L + ++ E I+I + R F + S+ P+ ++++ Sbjct: 16 LMESIKKALEREIEQGAIE---VENLGQQIVIRM---REKGAFPEGSAFLQPKFRPLVRQ 69 Query: 255 IGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSA 295 I E++ ++ I GHTD + R NW LS RA S Sbjct: 70 IAELVKDVPGIVRISGHTDNQRLDSELYRSNWDLSSQRAVSV 111 >gi|118578992|ref|YP_900242.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501702|gb|ABK98184.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379] Length = 224 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E R G + + + +FD L K L S I I+GHTD++ Sbjct: 93 EVVRDGENV-YVALPSGILFDTGKDELKTSAKESLAKAAATLKSSETNIIIQGHTDST-- 149 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + N LS RA L +GV R++ I G+ R + +D + NRR+ Sbjct: 150 -GSDKINQPLSQRRANQVRDFLAANGVPSSRMTAI-GYGSSRPAVPNDTEVNRALNRRVQ 207 Query: 336 ILVEDRQ 342 + + + Sbjct: 208 LEISPNE 214 >gi|255037862|ref|YP_003088483.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950618|gb|ACT95318.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 525 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 30/258 (11%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P + + ++ + + V + G K + +E I Y + E + Sbjct: 293 PKPAPADSAVEAPVAVVPPSDPVVMISGKVIDSKTNKPVEATIIYEDLTTGEEVGTATTN 352 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + K + N+ + + + ++K +++A Sbjct: 353 PTTGEYKLVLPYGQKYSMRAVAPNFIAEGENIDLTDSTGKEKSFKEIAN----------- 401 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--- 265 K + G ++ + N F + E+ L +I ++ + Sbjct: 402 ----KSLKLIPIEEGQIVRL----NNIFFATGKATLREESFPELNRIA--ISMTENKTLA 451 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I + GHTD + A N LS +RA + + L+ G+ DRI+ G+ + +D Sbjct: 452 IELGGHTDNT---GSAEFNVNLSQERADTVREYLIGKGIEPDRIAS-KGYGETKPVATND 507 Query: 326 P--MNSANRRIDILVEDR 341 NRR++ + + Sbjct: 508 TPEGQQQNRRVEFKILKK 525 >gi|253999219|ref|YP_003051282.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4] gi|253985898|gb|ACT50755.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] Length = 222 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+++ +++ +G GV T + + D + FD S P Sbjct: 73 RRMEEQKQQMEQATAGT-------GVQVSQTADN-RLKL-DIPSDISFDSGKSDIKPNFR 123 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + L + ++I GHTD + + LSL+RA A L+ GV+ R Sbjct: 124 PVLDSFAQSLVANPATRVTIVGHTDNTGTDAVNNP---LSLNRANHARDYLVTRGVASSR 180 Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + G H + SD + NRR++I V + Q Sbjct: 181 FT-TEGRGSHEPLVENNSDANRAKNRRVEIFVAEPQA 216 >gi|237736307|ref|ZP_04566788.1| outer membrane protein [Fusobacterium mortiferum ATCC 9817] gi|229421655|gb|EEO36702.1| outer membrane protein [Fusobacterium mortiferum ATCC 9817] Length = 203 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K E +R G +++ F +S+ L I VL E I + G Sbjct: 75 LKNTEVEVSREGDNLNLY-LPGGVTFATNSANIASNFYGPLNSIASVLVQYPETRIVVNG 133 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA--HHRLKIASDPMN 328 +TD + A N LS RA S + GV R++ + G + R ++ Sbjct: 134 YTDNT---GAASYNLDLSQRRANSVRDYFISQGVESYRVTSV-GHGINNPRATNSTAAGR 189 Query: 329 SANRRIDILVED 340 + NRR++I + Sbjct: 190 AENRRVEIQILP 201 >gi|207722387|ref|YP_002252823.1| outer membrane protein [Ralstonia solanacearum MolK2] gi|206587566|emb|CAQ18148.1| outer membrane protein [Ralstonia solanacearum MolK2] Length = 215 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSRLDQEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L+ E++ + G D R DNW LS Sbjct: 93 FALNSDQLQPEGRELLKSLAGPLSAYLQSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A D + NRR++I Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNADDEGRAKNRRVEI 200 >gi|114765948|ref|ZP_01444962.1| hypothetical protein 1100011001347_R2601_22192 [Pelagibaca bermudensis HTCC2601] gi|114541762|gb|EAU44800.1| hypothetical protein R2601_22192 [Roseovarius sp. HTCC2601] Length = 360 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I+ + F S+ E++ +L+ + +V++ + I I GHTD+ Sbjct: 246 RFEILSRAGNIYFGAGSARLSAESVPLLENLYDVVSRCPDLKIEIAGHTDSD---GSDAA 302 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 N RLS RA S + L G+ E R+ + G+ + S + NRRI+ Sbjct: 303 NLRLSELRAASVKEYLQGKGIPESRML-VVGYGEAQPLLENTSAANKARNRRIE 355 >gi|126453039|ref|YP_001067883.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|242315370|ref|ZP_04814386.1| ompA family protein [Burkholderia pseudomallei 1106b] gi|254198619|ref|ZP_04905040.1| ompA family protein [Burkholderia pseudomallei S13] gi|126226681|gb|ABN90221.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|169655359|gb|EDS88052.1| ompA family protein [Burkholderia pseudomallei S13] gi|242138609|gb|EES25011.1| ompA family protein [Burkholderia pseudomallei 1106b] Length = 310 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 220 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305 >gi|300698137|ref|YP_003748798.1| transmembrane protein, OmpA/MotB motif [Ralstonia solanacearum CFBP2957] gi|299074861|emb|CBJ54429.1| putative transmembrane protein, OmpA/MotB motif [Ralstonia solanacearum CFBP2957] Length = 215 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSRLDQEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L+ E++ + G D R DNW LS Sbjct: 93 FALNSDQLQPEGRELLKSLAGPLSAYLQSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A D + NRR++I Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVGSNADDEGRAKNRRVEI 200 >gi|254492090|ref|ZP_05105265.1| hypothetical protein MDMS009_2433 [Methylophaga thiooxidans DMS010] gi|224462642|gb|EEF78916.1| hypothetical protein MDMS009_2433 [Methylophaga thiooxydans DMS010] Length = 224 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + + K++ + L+ A + ++ E + I D N FD S+ Sbjct: 69 MDNQQKEMEAALAEEQARHELEIQQLEN--ETLKI---DIANEVSFDFDSAALKSAFTPT 123 Query: 252 LQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ +VL I + GHTD+ N RLS RA S GV+ R+ Sbjct: 124 LSKVADVLQRYPNTIIHVVGHTDSV---GSESYNQRLSERRAQSVVDYFSSRGVATGRLY 180 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 I G + ++ NRR++I V+ Sbjct: 181 AI-GRGETEPRATNETEAGRQLNRRVEIFVKP 211 >gi|134292796|ref|YP_001116532.1| hypothetical protein Bcep1808_4087 [Burkholderia vietnamiensis G4] gi|134135953|gb|ABO57067.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 214 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 20/175 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ + L+G +A T I I + Sbjct: 42 QLTSKLEEAVRARRQEAQQRASLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + LA E++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPAGRDLLKTLAGPLAAYLKTRDEILMVSGFADDQQVRAGNRLFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + F + A D + NRR++I R+ Sbjct: 152 KRALTVTRALIDAGVPAPSVFAAA-FGSQQPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|16262781|ref|NP_435574.1| outer membrane protein [Sinorhizobium meliloti 1021] gi|307315940|ref|ZP_07595434.1| Protein of unknown function DUF2092, periplasmic [Sinorhizobium meliloti BL225C] gi|14523413|gb|AAK64986.1| outer membrane protein [Sinorhizobium meliloti 1021] gi|306898414|gb|EFN29107.1| Protein of unknown function DUF2092, periplasmic [Sinorhizobium meliloti BL225C] Length = 420 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 7/129 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 VK E+ + + + FD S P +L I L + + I G Sbjct: 58 VKQYSKESMQQALQTREQYDVHGLSFDTGQSTLQPGAKPLLDDIATALKNFPDWSLRIVG 117 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 HTDA A N RLSL+RA + L++ G+ ++ +G R ++ D Sbjct: 118 HTDA---SGSAESNERLSLERANTIKAALVERGIDAGKLLA-AGAGQSRPIASNETDEGK 173 Query: 329 SANRRIDIL 337 + NRR++++ Sbjct: 174 ALNRRVELM 182 >gi|254254994|ref|ZP_04948311.1| Flagellar motor protein [Burkholderia dolosa AUO158] gi|124899639|gb|EAY71482.1| Flagellar motor protein [Burkholderia dolosa AUO158] Length = 214 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 18/174 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + A++ +++ K + L+G +A T I I + Sbjct: 42 QLTSQLDEAVRARQQEAQQRKSLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + LA E++ + G D R R DNW LS Sbjct: 92 FALNSDQLQPEGRALLKTLAGPLAAYLKTRDEILMVSGFADDQQVRAGNRLFADNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 RA + + L+ +GV + + G H A D + NRR++I R+ Sbjct: 152 KRALTVTRSLIDAGVPASSVFAAAFGSEHPVSSNADDEGRAKNRRVEIAPVPRK 205 >gi|325523338|gb|EGD01688.1| Outer membrane protein [Burkholderia sp. TJI49] Length = 552 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD + P++ + E++ + I + G+TD N +LS+ RA Sbjct: 443 SLFDSGKAQLKPDSTRAMVGALEMIKTHPDKRILVAGYTDNV---GHPDSNLKLSVARAQ 499 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + L+++ G+ + I G+ R +D + NRR++I + Sbjct: 500 AVRDWLIEASGIPATQF-AIQGYGDTRPIADNDTPEGRARNRRVEITLVP 548 >gi|59801892|ref|YP_208604.1| hypothetical protein NGO1559 [Neisseria gonorrhoeae FA 1090] gi|260439855|ref|ZP_05793671.1| hypothetical protein NgonDG_01984 [Neisseria gonorrhoeae DGI2] gi|291043130|ref|ZP_06568853.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|59718787|gb|AAW90192.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|291012736|gb|EFE04719.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|307075938|emb|CBE70801.1| outer membrane protein A [Neisseria gonorrhoeae] Length = 225 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + G E R G I ++ + F S+ L + L + ++I Sbjct: 86 QNLAGTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 144 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + + A +N LS RA + L GV+ R++ + G+ H ++ Sbjct: 145 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 200 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 201 GRAQNRRVEILINPDQ 216 >gi|254467574|ref|ZP_05080983.1| YceI like family [Rhodobacterales bacterium Y4I] gi|206684322|gb|EDZ44806.1| YceI like family [Rhodobacterales bacterium Y4I] Length = 327 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283 I+ Q + F S++ + L + +++ +I + GHTD+ A Sbjct: 213 RFEILSQGRSVNFAPSTARLDASSRDFLNSLSDIIRRCPGMIVEVGGHTDSQ---GKAAW 269 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 N LS RA + Q L K G+ +R+ + G+ + ++ + NRRI+ V + Sbjct: 270 NMALSEKRAAAVNQYLQKKGIPSERLVAV-GYGETTPLVPNNTAQNRAKNRRIEFKVLN 327 >gi|167839895|ref|ZP_02466579.1| hypothetical protein Bpse38_24699 [Burkholderia thailandensis MSMB43] Length = 215 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E + + R + L + TL +A + G + I I + + Sbjct: 39 GVQLELSSKLDAEVRQRQLESQRRKTLEQALAGPLAAGRVTLVNG---RIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + LA + E++ + G D R R DNW LS Sbjct: 93 FALNSDELQPAGRDLLKSLAGPLAAYLDANHEILMVSGFADDLQVRTGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + + GV + + F + + D + NRR++I Sbjct: 153 KRALTVTRAFIDEGVPAASVFAAA-FGSEQPVSPNSDDAGRAKNRRVEI 200 >gi|126732831|ref|ZP_01748624.1| hypothetical protein SSE37_02990 [Sagittula stellata E-37] gi|126706670|gb|EBA05743.1| hypothetical protein SSE37_02990 [Sagittula stellata E-37] Length = 605 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 19/195 (9%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + G+ + ++ P+ + RL D+ + Sbjct: 422 SQQAGRTQNGIAMMHFNLPDVTIERSAPVERTPPPPPVVVDRLDDIRTALEG-------- 473 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + V + ILI + + F + + + IG VL I I Sbjct: 474 ---QEVEVDVKNEWILIRL---GSALRFASGRAELENDLSALATAIGVVLNEQPGPIRIV 527 Query: 270 GHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA--HHRLKIASD 325 GH+D+ P R N LS RA + L+ + + + + G A+ Sbjct: 528 GHSDSVPLSGRGRFKTNEELSQARAQTVTD-LVTANLDDKERVSVEGKGPVDPIADNATA 586 Query: 326 PMNSANRRIDILVED 340 + NRR++I++ Sbjct: 587 EGRARNRRVEIMIRR 601 >gi|187929080|ref|YP_001899567.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J] gi|187725970|gb|ACD27135.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] Length = 167 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 8/161 (4%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + L+ + K+ + L+++I+ L+ + V T I IS F Sbjct: 2 EALSAQLAKQRESLSERIARALAP---EAGAAPVGISTKDDRIYISFNSDEG---FASGR 55 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM 300 + + L ++ VLA + +++ GHTD +P R+ N LS RA + + L Sbjct: 56 ADLMLMLARQLDRLATVLADTRGKVTVLGHTDDAPGPRDRMESNLALSTARATAVARHLQ 115 Query: 301 KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 + G++ DR+S I G + + NRR++I++E Sbjct: 116 ERGIASDRLSIIGRGVKDPVGDNRTAAGRALNRRVEIILES 156 >gi|161504516|ref|YP_001571628.1| hypothetical protein SARI_02629 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865863|gb|ABX22486.1| hypothetical protein SARI_02629 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 559 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD S+ P T +++ + + A +I + GHTD + + N Sbjct: 420 IVRLDSMSLFDSGKSVLKPGSTKMLVNSLLGIKARPGWLIVVSGHTDNT---GSVQLNQT 476 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA + + +G + + G+ R ++D + NRR++I + + Sbjct: 477 LSLQRAEAVRNWMRDTGDVPESCFAVQGYGDSRPIASNDTPDGRAHNRRVEISLVPQ 533 >gi|53720708|ref|YP_109694.1| putative outer membrane protein [Burkholderia pseudomallei K96243] gi|52211122|emb|CAH37110.1| putative outer membrane protein [Burkholderia pseudomallei K96243] Length = 310 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 220 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305 >gi|317407132|gb|EFV87132.1| chemotaxis motB protein [Achromobacter xylosoxidans C54] Length = 218 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +K+++ + + L+ +A T I I + + Sbjct: 45 ELSTQLEQEVKQRQEETQRRQTLEHALAAPLAAG-------RVTLINGRIGIS---GSVL 94 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE VL+ + E L + E++ + G TD R R DNW LS Sbjct: 95 FALNSDQLQPEGREVLKSLIEPLSAYLKANDEILMVSGFTDDQQVREGNRRFADNWDLSA 154 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILVEDR 341 RA + + L+ GV + + A + A + + NRR++I+ + Sbjct: 155 QRALTVTRALIDEGVPSSLVFAAAFGAEQPVASNADEEGRAKNRRVEIMPLPK 207 >gi|254461268|ref|ZP_05074684.1| flagellar motor protein [Rhodobacterales bacterium HTCC2083] gi|206677857|gb|EDZ42344.1| flagellar motor protein [Rhodobacteraceae bacterium HTCC2083] Length = 760 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 19/249 (7%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 ++ + + T+Q + N +Q S + + +L Sbjct: 508 AARDELVQEQERTSQAQLQTEALNQQVAALRAQLSSLQAILDEAKIQDDASQVQLQNLGS 567 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLA---KKISSTLSGLVADNIVKGVLFETTRT 222 +N K + L +KRL+ A ++ + L ++ + + Sbjct: 568 ELNAALARVAADERKRRELEEAERKRLEVEALALQEQTKDLERYRSEFFGRLRDVLGRQD 627 Query: 223 GILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGHT 272 G+ I + +F + PE + K+ +L +I + GHT Sbjct: 628 GVRIEGDRFVFSSEVLFPPGRAALSPEGRGEVAKVASILLAVADDIPDGIDWIIRVDGHT 687 Query: 273 DASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPM 327 D P + DNW LS RA S + ++ G+ R++ +GF + SD Sbjct: 688 DNVPLSGLGEFADNWELSQARALSVVKYMVNFLGIQPTRLAA-NGFGQFQPVNLEDSDEA 746 Query: 328 NSANRRIDI 336 + NRRI++ Sbjct: 747 RAQNRRIEL 755 >gi|115372712|ref|ZP_01460018.1| hypothetical protein STIAU_6203 [Stigmatella aurantiaca DW4/3-1] gi|115370193|gb|EAU69122.1| hypothetical protein STIAU_6203 [Stigmatella aurantiaca DW4/3-1] Length = 334 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282 I I + +F+ + ++ +L ++ VL + + I GHTD Sbjct: 188 RIRI---KGNILFETGQAKIQKQSFKLLDEVASVLRRNPTLGPVLIEGHTDNV---GSRN 241 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA + L G+ R+S GF + +D + NRR++ Sbjct: 242 YNVDLSQRRAKAVLDYLAGKGIDRKRLSS-KGFGFDQPIATNDTPLGRAKNRRVE 295 >gi|304312214|ref|YP_003811812.1| hypothetical protein HDN1F_25860 [gamma proteobacterium HdN1] gi|301797947|emb|CBL46169.1| Hypothetical protein HDN1F_25860 [gamma proteobacterium HdN1] Length = 222 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 12/152 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 Q +A +++ L + +V+ E I+I I F +++ P+ + VL Sbjct: 77 QQVAVRVALALKAPIERGLVE---VEAVGRYIVIRI---PEATCFPTNAATLRPQCLPVL 130 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAYSA-YQVLMKSGVSEDRI 309 I L + ++ GH+D P NW + RA + ++L +G S D Sbjct: 131 VTIRSALQGLEKARYTVAGHSDDVPINTARYSSNWEFAAARAGAVLVELLKATGFSADHF 190 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVE 339 + S + R +A+ + NRR++++VE Sbjct: 191 TLAS-YGPTRPLVANTSADNRARNRRVEVVVE 221 >gi|225552270|ref|ZP_03773210.1| flagellar motor apparatus [Borrelia sp. SV1] gi|225371268|gb|EEH00698.1| flagellar motor apparatus [Borrelia sp. SV1] Length = 260 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 22/168 (13%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-P 246 R K+ AK + ++ + K ++ GI+IS+ FD +S+ Sbjct: 88 RNKQASQTAK--NKSMIEFIEKIQSKNIVVRQEERGIVISLAAD---AFFDSASADVKLE 142 Query: 247 ETIVVLQKIGEV---LAHSTEVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQ---- 297 E +QKI L+ I GHTD + + NW LS+ R+ + + Sbjct: 143 ENRDSIQKIASFIGFLSPRGYNFKIEGHTDNIDTDINGPWKSNWELSVARSVNMLEHILN 202 Query: 298 VLMKSGVSEDRI---SKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L +S V RI ++SGF R D + NRRIDIL+ Sbjct: 203 YLDQSDV--KRIENSFEVSGFGGSRPIATDDTPEGRAYNRRIDILITT 248 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFG 73 + + + Y D +T+L+ FF+ M+ +N ++ + + F G Sbjct: 4 RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRIMSASFTGAG 60 >gi|187919624|ref|YP_001888655.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans PsJN] gi|187718062|gb|ACD19285.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 320 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 89/272 (32%), Gaps = 12/272 (4%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + G + +I + K + + Sbjct: 49 PPAASASVGNAGPAVNTAGLASGTTGAGTGAITAAPPPANATPGQVVVGGKVPDEATKAA 108 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + ++ S +++K I + K + K Sbjct: 109 VLARLRDTYGAANVVDQIEVADVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKG 168 Query: 191 RL--QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + + ++++S ++ + I G+ + G+L + R F+ S+ P Sbjct: 169 EVHNESQRQQLASDMANALNPTYTIKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTP 227 Query: 247 ETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + +L ++ ++ +T+ ++I GHTD N LS RA + L+ G+ Sbjct: 228 QGRAILDQMAAAMVKMTTKTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKGIP 284 Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRID 335 ++ +G + ++D + NRRI+ Sbjct: 285 PQQL-STTGVGPDQPIASNDTTDGRARNRRIE 315 >gi|87121845|ref|ZP_01077731.1| flagellar motor aparatus [Marinomonas sp. MED121] gi|86162874|gb|EAQ64153.1| flagellar motor aparatus [Marinomonas sp. MED121] Length = 258 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 5/188 (2%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S N + + K E+ + L P + A + + K Sbjct: 54 AMSSKGANVSQQPDKYSDGGEKVIMPERQEVGIDKDLLVPTTDTASAAEALEAEKLEEIK 113 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ +S + + V+ LI +D +F+ S ++ + +++ + Sbjct: 114 AMAEVVSEQIEITQLSNVVTVLQNGDQLIITVD--GQTLFESGESELSWQSDYIFEELIK 171 Query: 258 VLA-HSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + + I+I+GHTD P R + NW LS RA + + ++ G+ R++ +G+ Sbjct: 172 MFKFYFEFSINIKGHTDNIPIRTVKFPSNWELSAIRATTVLRYFLEEGIGAQRMTA-TGY 230 Query: 316 AHHRLKIA 323 A Sbjct: 231 ADSVPIAP 238 >gi|312796631|ref|YP_004029553.1| Chemotaxis motB protein [Burkholderia rhizoxinica HKI 454] gi|312168406|emb|CBW75409.1| Chemotaxis motB protein [Burkholderia rhizoxinica HKI 454] Length = 216 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 16/174 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + + ++ + R + + + TL ++A + G + I I + + Sbjct: 39 GMQLQLSAKLENEVRQRQMETQRRKTLEQVLAGPLAAGRVTLVNG---RIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + + L + E++ + G D R R DNW LS Sbjct: 93 FALNSDQLQPEGRELLKSLAKPLRSYLSARDEILMVSGFADDQQVRAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 RA + + + GV + + F + A D + NRR++I R Sbjct: 153 QRALTVTRAFISEGVPASSVFAAA-FGSEQPVSSNADDAGRARNRRVEIAAVPR 205 >gi|114776523|ref|ZP_01451568.1| putative lipoprotein [Mariprofundus ferrooxydans PV-1] gi|114553353|gb|EAU55751.1| putative lipoprotein [Mariprofundus ferrooxydans PV-1] Length = 223 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 V+ T + +++ F S+ + L + +L + ++I GHTD Sbjct: 98 VVQRETPQALKLTLSRDAA---FASGSNELSEQGKQTLDDVATLLKRYKKTRLTITGHTD 154 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331 ++ + LS RA + ++ GVS DRI+ SG +D + N Sbjct: 155 STGTALFNQS---LSERRALAVASYMISKGVSADRIAS-SGMGESSPAYPNDSAANRAKN 210 Query: 332 RRIDILVED 340 RR++IL+ Sbjct: 211 RRVEILITT 219 >gi|73537739|ref|YP_298106.1| hypothetical protein Reut_B3905 [Ralstonia eutropha JMP134] gi|72121076|gb|AAZ63262.1| OmpA/MotB [Ralstonia eutropha JMP134] Length = 215 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 16/168 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + L + K+R +++ ++ +L +A + G + I I + + Sbjct: 41 QMELTARLEKEAKQRQEEMQRR--ESLEKALAAPLAAGRVTLVNG---RIGI---NGSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ VL+ + L+ E++ + G TD R R DNW LS Sbjct: 93 FAINSDQLQPQGRDVLKSLAGPLSAYLRSRDEILMVSGFTDDQQVRERNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDI 336 RA + + L+ +G+ + + A + A + + NRR++I Sbjct: 153 QRALTVTRALIDAGIPAASVFSAAFGAEQPVTSNADEAGRARNRRVEI 200 >gi|304319913|ref|YP_003853556.1| flagellar motor protein [Parvularcula bermudensis HTCC2503] gi|303298816|gb|ADM08415.1| flagellar motor protein [Parvularcula bermudensis HTCC2503] Length = 343 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 94/258 (36%), Gaps = 23/258 (8%) Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157 +++ D K++ +GS+ + + L + L Sbjct: 95 LEVLQDTIAEKDAQIASLGSSVAASAEELEVERALSEEQKAEIATLNAQLAALRRQLASL 154 Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 ++ + ++ + E+ + LS+ A+ R R+ +LA+ S L L A + Sbjct: 155 QEALEAAEAKDVEQQAQIENLSQRLNAALAR--RVNELARVRSDFLEQLAAALEGRPGFR 212 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------TEVISIR 269 I+ +F S+ P VL+ + + V+ + Sbjct: 213 RDGDRYIV------EGDVLFGSCSTELTPAARDVLRTVAAAINDVRRDLDTDYEWVLRVD 266 Query: 270 GHTDASPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-S 324 GH D P R + N +LS RA S + L GV DR+ +GF +A Sbjct: 267 GHADQVPLGAACRALFDSNLQLSTRRALSVVEFLSSQGVPADRLVA-AGFGDAYPLVAGR 325 Query: 325 DPMN-SANRRIDILVEDR 341 DP + + NRRI+ + +R Sbjct: 326 DPASLAQNRRIEFKLTER 343 >gi|124006466|ref|ZP_01691299.1| outer membrane protein [Microscilla marina ATCC 23134] gi|123987879|gb|EAY27559.1| outer membrane protein [Microscilla marina ATCC 23134] Length = 693 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 G I + N FD + P + L ++ ++L + I I GHTDA Sbjct: 579 QGQSIRL----NNLFFDYNQDTLKPSSYPELNRLIKILQKHPQMNIEISGHTDA---HGS 631 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A N LS RA S + L G+++ R+ + G+ R + + NRR++ L+ Sbjct: 632 ADKNLTLSQARANSVLRYLTTQGIAKQRL-RAKGYGQGRPVANNTTVAGRALNRRVEFLI 690 Query: 339 E 339 Sbjct: 691 L 691 >gi|146307724|ref|YP_001188189.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145575925|gb|ABP85457.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 270 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 11/184 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + ++ + + L +R + AK +S + + + T Sbjct: 89 AEIARQHSDSSLNQERAAKLELERQRLQLTLREAKLLSVQQHNGWLEEQMVSLATSETER 148 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 G+++++ D +FD + P + K+ + L + + I G+TD + A Sbjct: 149 GLVMTLGDM----LFDAGRADLQPAANRTVLKLVQFLQINPQRRVRIEGYTDNT---GSA 201 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 +N LS RA + +L+ G+ RI ++ G+ AS + NRR++I+ Sbjct: 202 EENLELSRARAQAVADLLVDLGIDAKRI-QVVGYGVDFPVAENASARGRAQNRRVEIVFS 260 Query: 340 DRQG 343 D +G Sbjct: 261 DERG 264 >gi|238916758|ref|YP_002930275.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750] gi|238872118|gb|ACR71828.1| chemotaxis protein MotB [Eubacterium eligens ATCC 27750] Length = 266 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 68/324 (20%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + WK ++D M +L+ FF++++ ++ D + I + L Sbjct: 3 KQRTEDAPPAALWKDTFSDLMNLLLCFFVLLFAMSTVDSQKFEEIAASLSSSFSVLPQGG 62 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 + E + DLS Sbjct: 63 SALSKEGILVSSGASQLNDLS--------------------------------------- 83 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + + D S D++ + ++ E L ++ + +A++I Sbjct: 84 -----TFYNNMGLNNDGNMSQDIQNAYDEIEKEGL--------------EQSESMAQEIK 124 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ A + + +++++ +FD + P+ + +L K+ + L Sbjct: 125 DKLT---ASGVADQIEVTAYSKYVMLNV---NGGILFDSGKAELTPQALTLLDKVADALI 178 Query: 261 HST-EVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 VI+I GHTD P N LSL RAYS + + D+ SG Sbjct: 179 EYDDNVITIEGHTDNVPINTSRYPNNMMLSLYRAYSVFDFFVSDKGFSDKTMSSSGRGDA 238 Query: 319 RLKIASDP--MNSANRRIDILVED 340 + + NRR++I V + Sbjct: 239 VPIADNGTPEGRAQNRRVEIKVYN 262 >gi|77164341|ref|YP_342866.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|254434085|ref|ZP_05047593.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani AFC27] gi|76882655|gb|ABA57336.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|207090418|gb|EDZ67689.1| Rickettsia 17 kDa surface antigen family [Nitrosococcus oceani AFC27] Length = 248 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + D +++ + L+ + ++ + + D + FD S + P + Sbjct: 81 MNDQQREMEAALAEERRGHQLEIQRLQDESLKL-----DIPSEISFDHDSDVLKPAFLPT 135 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L KI EVL + V+ + GHTD++ + N LSL RA + + GV R+ Sbjct: 136 LDKIAEVLKKYNKTVVHVIGHTDST---GSEKYNLDLSLRRAGNVAVYFERKGVPSQRL- 191 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 I G + ++ NRR++I+++ Sbjct: 192 SIYGRGESEPRASNATAAGRQLNRRVEIILKP 223 >gi|315225274|ref|ZP_07867091.1| OmpA domain protein [Capnocytophaga ochracea F0287] gi|314944957|gb|EFS96989.1| OmpA domain protein [Capnocytophaga ochracea F0287] Length = 360 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 I T +FD S+ P+ +L I ++ + + + GHTD + N Sbjct: 245 QINLYAKTILFDTDKSVVKPQAEFILDNIAIIMNENPDFNFVVEGHTDNT---GTPEHNL 301 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342 +LS DRA + Q L + GVS+ R+ G+ R +++ NRR++I +V+D Q Sbjct: 302 KLSQDRADAIKQYLSRHGVSKKRLDA-KGYGQTRPIESNETERGKEINRRVEINVVKDNQ 360 >gi|162453582|ref|YP_001615949.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161164164|emb|CAN95469.1| probable outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 104/268 (38%), Gaps = 10/268 (3%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 L TA + + + + + + + + + + + Q + + Sbjct: 57 AQLDTAKQALSRAEGAFGEEPEAPQTRDLAYIADRKAQEAEAAAALLQAQRDKAAAEDAF 116 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 SQQ ++ + + + +++ ++ A ++ ++ Sbjct: 117 KDLSQQQLASAREALHSGQQQIERERHARAQAETAQQQAESARLQAESARTAAEKARQEA 176 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + A++ + ++ ++ + + + G++I++ +F S LP L Sbjct: 177 EAARREAERVANAALASLKEIAAVKEEKRGVVITLS---GAVLFASGKSELLPIAKEKLS 233 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 ++ L I I GHTD++ A+ N +LSL+RA + L+ +G+ D+I+ + Sbjct: 234 QVAATLKDQGSPPIRIEGHTDST---GSAQANRKLSLERADAVKAHLITAGLPGDKIATV 290 Query: 313 SGFAHHRLK--IASDPMNSANRRIDILV 338 G R +S + NRR++I+V Sbjct: 291 -GHGPDRPVADNSSTEGRANNRRVEIIV 317 >gi|218887300|ref|YP_002436621.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758254|gb|ACL09153.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 307 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 18/133 (13%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA---- 281 I I + +F ++ +L +I VL + + GH ASP R+ Sbjct: 115 IQIFSINDEVLFRTGATELTERGAALLARIAPVLRGVEHPVLVAGH--ASPARDEEGILF 172 Query: 282 ---------RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330 WRLSL RA + Y+ L GV R+ I R + + A Sbjct: 173 RLRGDEKTLPTPWRLSLGRATAVYRRLADLGVPRGRML-IEAHGDTRPRFDNLTPEGRRA 231 Query: 331 NRRIDILVEDRQG 343 NRR+DI+++ R Sbjct: 232 NRRVDIVLDRRNA 244 >gi|255067217|ref|ZP_05319072.1| OmpA family protein [Neisseria sicca ATCC 29256] gi|255048585|gb|EET44049.1| OmpA family protein [Neisseria sicca ATCC 29256] Length = 261 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 +K E R G I ++ N F S+ + L E L + ++I Sbjct: 121 ENLKNTNIEVERQGNQIKLVMPENVT-FATGSAALSDQARNALATASETLVQYPDTTLTI 179 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + N LS +RA + L GV+ R++ +G+ ++ Sbjct: 180 NGHTDNT---GNDAINEPLSRNRALAVADYLQSRGVNGSRLT-TAGYGSRHPIASNATAE 235 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 236 GRAQNRRVEILINPDQ 251 >gi|261378300|ref|ZP_05982873.1| OmpA family protein [Neisseria cinerea ATCC 14685] gi|269145394|gb|EEZ71812.1| OmpA family protein [Neisseria cinerea ATCC 14685] Length = 225 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 G + R G I ++ N F S++ L + L + ++I GHT Sbjct: 90 GTQVQVQRQGNQIKLVMPENVT-FATGSAVLSDNAQFALNTAAQTLVQYPDTTLTINGHT 148 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D + + A +N LS RA + L GV+ R+ + G+ H ++ + Sbjct: 149 DNT--GSDAVNN-PLSQHRAQTVAYYLQSRGVAASRL-AVYGYGSHMPVASNATAEGRAQ 204 Query: 331 NRRIDILVEDRQ 342 NRR++IL+ Q Sbjct: 205 NRRVEILINPDQ 216 >gi|329847657|ref|ZP_08262685.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19] gi|328842720|gb|EGF92289.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19] Length = 208 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G TR+G I I+ F S+ + VL + +L I + G Sbjct: 79 LEGRNVYVTRSGDNI-ILSMPGDVTFSSGSADLNGGFMPVLNDVATILNQYPSTYIDVVG 137 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 H D+ N LS RA + L+ V +RI ++G ++D Sbjct: 138 HADSQ---GTDAFNMDLSERRANAVAGYLVGQKVKSERIY-VAGAGESSPIASNDTADGR 193 Query: 329 SANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 194 ARNRRVEITLRPIQ 207 >gi|171060845|ref|YP_001793194.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170778290|gb|ACB36429.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 229 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR++D K + + G D + TT + ++I + FD S P + Sbjct: 87 KRMEDKRKAMEAATQGTGID------VVRTTDNQLKVNIPADFS---FDVGRSAVKPVMV 137 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL K+ + L +T + + GHTD+S + LSLDRA + L + GV RI Sbjct: 138 PVLDKLAQGL-DATVQVQVIGHTDSSGSDAVNNP---LSLDRAEAVRDYLSRHGVPAARI 193 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ G + + NRR++I + + Q Sbjct: 194 -QVEGRGEREPVADNATPDGRAQNRRVEIFLREPQ 227 >gi|319778561|ref|YP_004129474.1| OmpA/MotB domain protein [Taylorella equigenitalis MCE9] gi|317108585|gb|ADU91331.1| OmpA/MotB domain protein [Taylorella equigenitalis MCE9] Length = 959 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 28/228 (12%) Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 G ++ L + SQ + + G+ K D E Sbjct: 635 TGHVISDERKTELVTKLQEALGSQFKIDADDVDVETPDVGETENKPVDDTNFPTPAEQPA 694 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 E+ + +LA + +S + +N+ ++ Sbjct: 695 DQTAPAEQATTSSETAQTDELANVLD--ISEMSKENLDLHIV------------------ 734 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD +SS P+ L + L S I G+TD N +LS +RA S Sbjct: 735 --FDSASSDIQPKYNDRLDAFAKYLIESNRTGEISGYTDNQ---GDDESNKKLSAERANS 789 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L+ GV E I + G+ ++ ANRRI+ V+D Sbjct: 790 VRNYLVSKGVPETNIVAV-GYGEANPIADNNTPEGRLANRRIEFNVKD 836 >gi|87201185|ref|YP_498442.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444] gi|87136866|gb|ABD27608.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444] Length = 230 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 8/146 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + L GV T G I +++ N FD SS P L ++ + Sbjct: 77 QKDKQIRELREQTAGTGVDVTETDNGQAI-LVNLPNGVTFDVDSSTVKPAFATTLDRVAQ 135 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L I + GHTD++ N LS RA + L+ GV RI + GF Sbjct: 136 SLVQYPNSLIDVYGHTDST---GSDAYNQALSERRARAVADYLISRGVGYARI-RSQGFG 191 Query: 317 HHRLKIASDPM--NSANRRIDILVED 340 + ++D ANRR++I + Sbjct: 192 ESQPIASNDTEQGRQANRRVEIKIVP 217 >gi|78189119|ref|YP_379457.1| OmpA family protein [Chlorobium chlorochromatii CaD3] gi|78171318|gb|ABB28414.1| OmpA family protein [Chlorobium chlorochromatii CaD3] Length = 233 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 D V+G + I + + D +F SS + ++++ +L Sbjct: 86 QAAAIDQNVEGAQVQRVGESIRV-VFDS--GLLFTTGSSTISAASRSNIEQLARILNTYG 142 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + I GHTD+ N LS RA S +L GV+ +R+S + G+ R Sbjct: 143 DTNVVIEGHTDSI---GNEATNQVLSEKRAESVATLLKVYGVAPNRMSAV-GYGETRPVA 198 Query: 323 ASDPMNSA--NRRIDILV 338 ++ NRR+++L+ Sbjct: 199 TNETEAGRNLNRRVEVLI 216 >gi|110680553|ref|YP_683560.1| hypothetical protein RD1_3382 [Roseobacter denitrificans OCh 114] gi|109456669|gb|ABG32874.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 659 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 23/278 (8%) Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + AS + + SQ + +L+ + I+ + Q + ++ + + Sbjct: 382 IMASDTSSESERRAALLSQARAELAQQQDISARAQRQTELLNQQVAALRTQLGDLQAVLD 441 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + S + + EE E++ + K RL+ A Sbjct: 442 DAKERDAAQQVQLQSLGSELNTALAR----VAAEERRRAALEEAERVRLQEEKARLEAEA 497 Query: 197 KKISST---LSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVV 251 ++++ L ++ + + G+ I + +F+ + + E Sbjct: 498 ARLTAQTKNLEQYRSEFFGRLRDVLGRQEGVRIEGDRFVFSSEVLFEPARADLSSEGQEE 557 Query: 252 LQKIGEVLAHS--------TEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMK 301 + K+ +L+ +I + GHTD P + + DNW LS RA S + ++ Sbjct: 558 IAKVARILSSVADEIPPEIDWIIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVD 617 Query: 302 S-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + G+ +R++ +GF + D + NRRI++ Sbjct: 618 TLGIPPNRLAA-NGFGEFQPVAVEDTPEARAQNRRIEL 654 >gi|86131069|ref|ZP_01049668.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85818480|gb|EAQ39640.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 470 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 91/275 (33%), Gaps = 28/275 (10%) Query: 78 TASKGIFDEQNP-PERSSQNKIDLSIDEHI-----TKNSVDLKIGSTNQKKQYQRLENNI 131 T GI+D+ + PE + + D D +K++ G + I Sbjct: 213 TDGDGIYDKDDACPEVAGLPEFDGCPDSDGDGIQDSKDACPTVAGLAEFDGCPDTDGDGI 272 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRK 189 ++ + +L + D K D N P K+ + + Sbjct: 273 PDPKDACPTVAGIAALGGCPDADGDGIKDADDNCPNEAGPRANNGCPYQDKDGDGVLDKD 332 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 D+A +++ V+ ++ + ET +FD + + E+ Sbjct: 333 DECPDVAGTVANNGCPEVSVEVLNDLNVET-------------KKVLFDYNKASIRTESY 379 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ V+ I GHTD R N LS RA S L G+ R Sbjct: 380 ATLDKVASVMMEYPTTRFLIEGHTDD---RGRDAYNLDLSDQRAASVRSYLTGKGIPASR 436 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 + GF R ++ NRR+++ + ++ Sbjct: 437 LES-KGFGEARPVASNKTAAGRQENRRVELSILEQ 470 >gi|167896107|ref|ZP_02483509.1| ompA family protein [Burkholderia pseudomallei 7894] Length = 243 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 96 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 152 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 153 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 209 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 210 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 238 >gi|167847521|ref|ZP_02473029.1| ompA family protein [Burkholderia pseudomallei B7210] Length = 249 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 102 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 158 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 159 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 215 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 216 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 244 >gi|313205587|ref|YP_004044764.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868] gi|312444903|gb|ADQ81258.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868] gi|315022683|gb|EFT35708.1| OmpA/MotB domain protein [Riemerella anatipestifer RA-YM] gi|325334983|gb|ADZ11257.1| Outer membrane protein related peptidoglycan-associated (lipo)protein [Riemerella anatipestifer RA-GD] Length = 230 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ AK+I L G E GI I++ NT F S+ Sbjct: 81 KMDKQAKEIKEALPGA---------EVERVNEGIKITL--NENTVNFGFDSANLTSVAKT 129 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L K+ +VL ++ + I++ GHTD+ R N RLS RA + L G++ R+ Sbjct: 130 NLDKLAQVLKNNPDTNINVYGHTDS---RGADDYNLRLSERRANAVVSYLSSLGIASSRM 186 Query: 310 SK-ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G A +D + NRR++ + + Sbjct: 187 IAKGVGEAEPIASNDTDEGRAKNRRVEFAITANE 220 >gi|85858897|ref|YP_461099.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB] gi|85721988|gb|ABC76931.1| outer membrane OmpA family protein [Syntrophus aciditrophicus SB] Length = 180 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277 TR G L+++ + FD +S+ P+ + ++ VL + I + G+TD+ Sbjct: 54 VTREGNLLAVT-FKGDVTFDTNSAEIRPDLYFEIDRVAGVLKQYPDTFIRVEGYTDS--- 109 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 + N LS RA + +L++ GV+E+RI + GF +D NRR++ Sbjct: 110 KGSDTYNMDLSKRRANAVKNLLVQRGVAENRIE-VVGFGETMPVATNDTEAGRQKNRRVE 168 Query: 336 ILV 338 I + Sbjct: 169 IKI 171 >gi|167740414|ref|ZP_02413188.1| ompA family protein [Burkholderia pseudomallei 14] Length = 245 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 98 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 154 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 155 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 211 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 212 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 240 >gi|319953189|ref|YP_004164456.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319421849|gb|ADV48958.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 604 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + L+ I +L + + +S+ GHTD + + N+ LS RA + Sbjct: 501 FDTGSANISSSSQSTLETIYNLLIQAEDTKLSLEGHTDDT---GSSEANYDLSQRRAQAV 557 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L G+ + R + G ++ + NRR+ I++ Sbjct: 558 VNFLRTKGIPQTRFQNVIGKGEDEPVESNTTNSGRAKNRRVVIVLL 603 >gi|167920717|ref|ZP_02507808.1| ompA family protein [Burkholderia pseudomallei BCC215] Length = 247 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 100 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 156 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 157 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 213 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 214 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 242 >gi|167589254|ref|ZP_02381642.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu] Length = 246 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ + + Q LA +++TL+ I G+ + G+L + R F+ S+ Sbjct: 95 EVRNEAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATL 151 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P+ VVL ++ L+ + + GHTD N LS RA + L+ G Sbjct: 152 TPQGKVVLDQMAAALSKMPNRTVDLIGHTDN---SGNRASNIALSQARADAVKGYLITKG 208 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++ +++ +G + +D + NRRID Sbjct: 209 IASQQMT-TTGVGPDQPIAPNDTAEGRARNRRID 241 >gi|21674175|ref|NP_662240.1| OmpA family protein [Chlorobium tepidum TLS] gi|21647337|gb|AAM72582.1| OmpA family protein [Chlorobium tepidum TLS] Length = 231 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 V+G E GI + + D +F S+ + ++K+ +L + + I G Sbjct: 92 VQGAKVERVGEGIRV-VFDT--GLLFSTDSATLNANSRYNIEKLARILNRYNDTNVVIEG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD + N LS RA S +L GVS R++ I G+ R ++ Sbjct: 149 HTDNT---GTEASNQILSERRAESVATLLRTYGVSGRRLTAI-GYGETRPVATNETEAGR 204 Query: 331 --NRRIDILV-----EDRQG 343 NRR+++L+ RQ Sbjct: 205 RLNRRVEVLIYANDALKRQA 224 >gi|312129863|ref|YP_003997203.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311906409|gb|ADQ16850.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 300 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 11/231 (4%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 Q++ N+ S ++ + + + T L +S N+ N L L Sbjct: 58 EQERDRVATTNSAKDNQISDLKSQIEDLRRVRDTQMERVGDLTVLNRSANENINKTLAQL 117 Query: 179 SKEK---ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 K+ L K + L ++ L + D + + + +++ + Sbjct: 118 EKKDKYISLLQAAKSKADSLNLALAVNLKSALKDGLDDTDVDVKVDK--TVVMVNLSDKM 175 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI-ARDNWRLSLDRAY 293 +F S P VL+K+ ++ + + + G+TD DNW LS+ R+ Sbjct: 176 LFTSGSYKISPRAYSVLEKVAAIIKSRPDLEVMVEGYTDNVSINTACIEDNWDLSVKRST 235 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 S + L GV ++I +G + ++ + NRR I++ + Sbjct: 236 SVVRTLQSKFGVDPNKIIA-AGRGEYNTLTSNSTAEGRAINRRTRIILMPK 285 >gi|295095728|emb|CBK84818.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 568 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD P + +L + + A +I + GHTD++ + N Sbjct: 430 IVRLDSMSLFDTGKWALKPASTKLLVNSLVGIKAKPGWLIVVAGHTDST---GDDQSNQV 486 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA S + +G + + G+ R +D + NRR++I + + Sbjct: 487 LSLKRAESVRDWMRDTGDVPESCFAVQGYGESRPVATNDTAEGRALNRRVEISLVPQ 543 >gi|99081935|ref|YP_614089.1| hypothetical protein TM1040_2095 [Ruegeria sp. TM1040] gi|99038215|gb|ABF64827.1| flagellar motor protein-like protein [Ruegeria sp. TM1040] Length = 784 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 19/207 (9%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST---LSGLVAD 209 + L + +N + ++L + +KRL+ +++++ L ++ Sbjct: 579 DAAQGIQLQSLGQDLNTALARAAAEERRRRMLEEQERKRLEAERERLANEAKDLEQYRSE 638 Query: 210 NIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 + + G+ I + +F S+ + K+ +L Sbjct: 639 FFGQLRSVLGNQEGVRIEGDRFVFASEVLFALGSAELSEAGKAEIAKVARILQNVAAAIP 698 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 +I + GHTD F + DNW LS RA S + ++ G+ R++ +GF Sbjct: 699 DDINWIIRVDGHTDNQRFVGAGKYADNWELSQGRALSVVRYMIDELGIPPGRLAA-NGFG 757 Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRRI++ + +R Sbjct: 758 EFQPVNPADTPEARAQNRRIELKLTER 784 >gi|284924249|emb|CBG37350.1| putative type VI secretion protein [Escherichia coli 042] Length = 576 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 10/111 (9%) Query: 236 MFDKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRA 292 +FD P ++ + ++ A + +I + GHTD + P RN A LSL RA Sbjct: 448 LFDAGKWTLKPGATKWLVNALVDIKAKAGWLIVVSGHTDNTGDPLRNQA-----LSLKRA 502 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + +G + G+ R +D + NRR++I + + Sbjct: 503 EAVRDWMRDTGDIPQSCFAVQGYGESRPVAPNDTAEGRARNRRVEISLVPQ 553 >gi|225619153|ref|YP_002720379.1| outer membrane protein OmpA family [Brachyspira hyodysenteriae WA1] gi|225213972|gb|ACN82706.1| outer membrane protein OmpA family [Brachyspira hyodysenteriae WA1] Length = 403 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 13/133 (9%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRG 270 V +T G+++ + +FD S PE + + + + + I + G Sbjct: 280 DNVTIDTVPEGLVLRL----GEILFDTDSYTLKPEAKNTIDNVIKAIKETYPDREIIVEG 335 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD + N LS RA S ++ + + D++ GFA ++D Sbjct: 336 HTDNT---GRKEYNQDLSEKRAKSVADYILPN-LDHDKL-SYKGFADDEPIASNDTPDGR 390 Query: 329 SANRRIDILVEDR 341 NRR+DI+++ R Sbjct: 391 RKNRRVDIIIKLR 403 >gi|218696635|ref|YP_002404302.1| hypothetical protein EC55989_3336 [Escherichia coli 55989] gi|218353367|emb|CAU99387.1| conserved hypothetical protein; putative membrane protein [Escherichia coli 55989] Length = 608 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 10/111 (9%) Query: 236 MFDKSSSIPLPETIV-VLQKIGEVLAHSTEVISIRGHTDAS--PFRNIARDNWRLSLDRA 292 +FD P ++ + ++ A + +I + GHTD + P RN A LSL RA Sbjct: 480 LFDAGKWTLKPGATKWLVNALVDIKAKAGWLIVVSGHTDNTGDPLRNQA-----LSLKRA 534 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + +G + G+ R +D + NRR++I + + Sbjct: 535 EAVRDWMRDTGDIPQSCFAVQGYGESRPVAPNDTAEGRARNRRVEISLVPQ 585 >gi|167817630|ref|ZP_02449310.1| ompA family protein [Burkholderia pseudomallei 91] Length = 240 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 93 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 149 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 150 RAILDQMAGALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 206 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 207 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 235 >gi|167583014|ref|ZP_02375888.1| OmpA domain protein [Burkholderia thailandensis TXDOH] Length = 324 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 177 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 233 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + I GHTD N LS RA + L+ G++ Sbjct: 234 RTILDQMAGALAKMPNRTVEIIGHTDN---SGNRASNIALSQSRADAVKGYLVTKGIASQ 290 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + ++D + NRRI+ Sbjct: 291 QLT-TTGVGPDQPIASNDSADGRARNRRIE 319 >gi|85704170|ref|ZP_01035273.1| flagellar motor protein [Roseovarius sp. 217] gi|85671490|gb|EAQ26348.1| flagellar motor protein [Roseovarius sp. 217] Length = 563 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 16/192 (8%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 +S+ E N L ++ E+ ++ L + L ++ + + G+ Sbjct: 373 QSLGNELNTALARVAAEERRRRIAEEERARLLEAEKEDLEKYRSEFFGRLRDVLGQQEGV 432 Query: 225 LI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDA 274 I + +F + + K+ +L + I + GHTD Sbjct: 433 QIVGDRFVFSSEVLFAPGEAELSLAGEGEIAKVAGILRNVIGDIPEGIDWVLQVDGHTDD 492 Query: 275 SPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA- 330 P AR DNW LS RA S + L G +R+S +G+ + D + Sbjct: 493 VPIVEGARFADNWALSQARALSVVRYLTGVLGFPAERLSA-NGYGEFQPVNPDDTAAARA 551 Query: 331 -NRRIDILVEDR 341 NRRI++ + R Sbjct: 552 QNRRIELKLTTR 563 >gi|220922989|ref|YP_002498291.1| type IV / VI secretion system protein, DotU family [Methylobacterium nodulans ORS 2060] gi|219947596|gb|ACL57988.1| type IV / VI secretion system protein, DotU family [Methylobacterium nodulans ORS 2060] Length = 489 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V E T + +++ + +F + E +LQ++ ++A I I GHTD+ Sbjct: 364 VTVEETNSQVVVRLA----AALFAPGDAAVTAEFRPLLQRVAGLIAREPGPIRIVGHTDS 419 Query: 275 SPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 +P RN N+ LS+ RA + + + +R+ + G +D + N Sbjct: 420 APVRNGRFASNFDLSVARAKAVAAAIRAAPEKPERLE-VEGKGPDAPVAPNDTVEGRARN 478 Query: 332 RRIDILV 338 RR++IL+ Sbjct: 479 RRVEILI 485 >gi|298207224|ref|YP_003715403.1| Thrombospondin type 3 repeat:OmpA/MotB [Croceibacter atlanticus HTCC2559] gi|83849860|gb|EAP87728.1| Thrombospondin type 3 repeat:OmpA/MotB [Croceibacter atlanticus HTCC2559] Length = 478 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 26/269 (9%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + G+ + P+ S D D + + +++ ++ Sbjct: 232 PETPGLAEFNGCPDTDSDGIEDRKDDCPNVAGTAEFNGCPDTDGDGIPDPKDDCPTVAGI 291 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q C ++ + +D C + N P K+ + + + D+A Sbjct: 292 QALNGCPDADGDGIKDSEDNCPNE-----AGPASNNGCPFEDKDGDGVLDKDDQCPDVA- 345 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 G VA+N V E + + T +FD + S E+ LQ I + Sbjct: 346 -------GTVANNGCPEVTVEVMNE-----LNEYSRTILFDLNKSTIRSESFETLQNIAD 393 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +++ I GHTD+ N +LS +RA S L GV+ ++++ G+ Sbjct: 394 IMSEYPTAKFHIEGHTDSQ---GSEAYNEKLSRERAASVRTYLTTKGVAANKLTS-EGYG 449 Query: 317 HHRLKIASDPMNSA--NRRIDILVE-DRQ 342 R + NRR++I +E DR+ Sbjct: 450 ELRPIATNKTAAGRQQNRRVEIKLEKDRK 478 >gi|226939690|ref|YP_002794763.1| OmpA/MotB [Laribacter hongkongensis HLHK9] gi|226714616|gb|ACO73754.1| OmpA/MotB [Laribacter hongkongensis HLHK9] Length = 225 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 12/155 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + ++ S L ++ ++ L + +++++ + F+ +S++ P Sbjct: 78 MDRQKAELESKLRSEISSGQMQ--LQQNADQSLVVTMNEDAT---FNLNSAVVKPAFYPT 132 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + K+ E L + + IRG+TD++ A N +LSL RA + L+ GV+ +RI Sbjct: 133 MNKVAETLKQYNQTTLVIRGYTDST---GAAAYNQQLSLKRANAVKSYLVGQGVAANRIQ 189 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 I G + ++D + NRR+ I + +QG Sbjct: 190 TI-GMGESDPRASNDTAQGRAMNRRVSITIVPQQG 223 >gi|162454304|ref|YP_001616671.1| OmpA family outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161164886|emb|CAN96191.1| putative OmpA family outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 488 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ ++ L ++ V+ + E + + GHTD + N LS RA + Sbjct: 385 FRTGSAELEQDSYRTLDQVALVMKANPEIERLRVEGHTDET---GTPELNQELSEQRAET 441 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMN-SANRRIDILVED 340 + L++ GVS R++ GF R +DP + + NRR++ ++++ Sbjct: 442 VRKYLIRKGVSPGRLTA-EGFGSDRPVAEGTDPASLAKNRRVEFVIDE 488 >gi|108757927|ref|YP_633347.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108461807|gb|ABF86992.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 476 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 12/119 (10%) Query: 225 LISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIA 281 I I + +F S ++ VL + + L + I I GHTD+ Sbjct: 363 RIEI---KKQILFSSGSHKIYGKQSTAVLDDVAQALRDAPWIKRIRIEGHTDSM---GND 416 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 N RLS RA + L++ G+ RI + GF + + + NRR + V Sbjct: 417 ASNLRLSQRRADAVMAQLLRRGIDPGRIQAV-GFGETQPIAPNSTKTGRAMNRRTEFKV 474 >gi|77464614|ref|YP_354118.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1] gi|126463454|ref|YP_001044568.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|332559507|ref|ZP_08413829.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] gi|77389032|gb|ABA80217.1| OmpA family protein [Rhodobacter sphaeroides 2.4.1] gi|126105118|gb|ABN77796.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332277219|gb|EGJ22534.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 228 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 18/216 (8%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + G L S NK E + + IL Sbjct: 26 SGGNPGMGAPGSYTRENPRASAGIATGAILGGLVGASASDNKLEKAVV-GAAVGGILGGA 84 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L A + +++ V T + +++++ +F S+ P+ Sbjct: 85 VGSALDRQAADLRNSIGN-------SQVSVTNTGSELVVTM---PQDILFATDSANLRPD 134 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L + + L I++ GHTD++ A N LS+ RA S VL+ +GV Sbjct: 135 LQRDLGAVAQNLLRYPNSTIAVVGHTDST---GAAAYNQDLSMRRAQSVAGVLIGNGVPS 191 Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 R+S I G + ++ + NRR+DI++ Sbjct: 192 YRVSAI-GRGEDQPIASNLTPEGRAQNRRVDIIIRP 226 >gi|299134013|ref|ZP_07027206.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] gi|298590760|gb|EFI50962.1| OmpA/MotB domain protein [Afipia sp. 1NLS2] Length = 464 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 19/229 (8%) Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + + +K ++E+ + + + Q +L+ S D +++ + Sbjct: 249 VSAIERKFVGVKIEDKLKASAGAPQGFLAATMTALSALSRLSTGTLTIQDRNVTLSGDAL 308 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 Y + LA K + + A+ ++ V I + +L G+L + Sbjct: 309 YPGANARISEELAAKLPQGWKQKAELTVKPVAAPVNATICQQLLT-----GLL-----AK 358 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 T F+ ++ P++ +L ++ E VL T I I GHTD++ N LS+ R Sbjct: 359 GTIQFETGKAVIDPDSAGLLDRLIEAVLRCPTSQIEIEGHTDSN---GEKEANLALSMRR 415 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 A + +K+GV ++RIS + GF R ++D + NRRI+ +V Sbjct: 416 AQAVADYFIKAGVPKERISAV-GFGSERPVASNDTEEGKAQNRRIEFVV 463 >gi|120603975|ref|YP_968375.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|120564204|gb|ABM29948.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] Length = 259 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 41/197 (20%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTP 235 +++K ++ L + K + L+ L +KGV + G+L Sbjct: 52 EAAEQKQELTEKYDELTNARKTRAEMLTSLERSLKMKGVEVSIDKDHGLL----HIPEGI 107 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---------------------TEV---ISIRGH 271 +FD S+ PE L I E L+ + + GH Sbjct: 108 LFDSGSAALPPEGGRTLDIIAEQLSTLLPCYSGKADAPAPDECRDNYKPGRLEAVFVEGH 167 Query: 272 TDASPF--RNIARDNWRLSLDRAYSAYQVLMKSG--------VSEDRISKISGFAHHRLK 321 TD P R +DNW LS RA + Y+ L+ + D + +SG+A R + Sbjct: 168 TDNVPMPPRGGIQDNWDLSTKRAVTTYRHLLGHAPTLAAFVNLDGDPLFGVSGYAASRPR 227 Query: 322 IASD--PMNSANRRIDI 336 D ++ NRRID+ Sbjct: 228 NPHDTPTPDAQNRRIDL 244 >gi|259416340|ref|ZP_05740260.1| OmpA family protein [Silicibacter sp. TrichCH4B] gi|259347779|gb|EEW59556.1| OmpA family protein [Silicibacter sp. TrichCH4B] Length = 784 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 19/207 (9%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST---LSGLVAD 209 + L + +N + +IL + +KRL+ +++++ L ++ Sbjct: 579 DAAQGIQLQSLGQDLNTALARAAAEERRRRILEEQERKRLEAERERLANEAKDLEQYRSE 638 Query: 210 NIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-------- 259 + + G+ I + +F S+ + K+ +L Sbjct: 639 FFGQLRSLLGDQEGVRIEGDRFVFASEVLFALGSAELSEAGKTEIAKVARILQNVAAAIP 698 Query: 260 AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFA 316 +I + GHTD F + DNW LS RA S + +M G+ R++ +GF Sbjct: 699 DDINWIIRVDGHTDNQRFSGTGKYADNWELSQGRALSVVRYMMDELGIPPGRLAA-NGFG 757 Query: 317 HHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRRI++ + +R Sbjct: 758 EFQPVNPADTPEARAQNRRIELKLTER 784 >gi|114046351|ref|YP_736901.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113887793|gb|ABI41844.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 514 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 11/185 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G D K + +++ K EN + S ++ + IS+ + ++ K Sbjct: 74 GYDFQKKREALEALAKTENLDIQFTSISASTNADNQQN----SLLISANNQAMSKEDQEK 129 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 ++ IS D+ MF S+ + LQK+ + S + I I GHTD Sbjct: 130 YSDYQVVGMAATISSTDEM---MFGSGSAEATAQAKQKLQKLAAIYKDSKQNILITGHTD 186 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANR 332 A N LS RA + ++G+ +R+ + +G + ++ + NR Sbjct: 187 A---SGSESLNQTLSEARARYVATLFNQAGIPTERLFFQGAGESQPVAANTNETGKAKNR 243 Query: 333 RIDIL 337 R++I+ Sbjct: 244 RVEIV 248 >gi|325525466|gb|EGD03280.1| flagellar motor protein MotB [Burkholderia sp. TJI49] Length = 109 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 37/59 (62%) Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 NW LS DRA ++ + L+ G+ E ++ ++ G A + +DP++ NRRI ++V +R+ Sbjct: 1 NWELSADRANASRRELIAGGMDEAKVMRVIGLASTQNLNKADPLDPENRRISVIVLNRK 59 >gi|114799158|ref|YP_761149.1| OmpA family protein [Hyphomonas neptunium ATCC 15444] gi|114739332|gb|ABI77457.1| OmpA family protein [Hyphomonas neptunium ATCC 15444] Length = 297 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 9/213 (4%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + Q E + ++++ + + ++ E + + + Sbjct: 91 MLAETRGLQREANTQIESLNTQRAEVVSQARMREVASAEAATTVAENRADRSDAVAAGAV 150 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ A + +E T+T + +++I + F S++ Sbjct: 151 ADSAASETARLAAEARAAALTAELADYEQTKTDLGVTLILRDLQ--FASGSALLTSGAQG 208 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + L+ E I I GHTD+ N LS RA S L +GV RI Sbjct: 209 RLAPLASYLSKQPESRIQIAGHTDSQ---GAEAYNQDLSARRAASVGTYLASTGVDSGRI 265 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + I G ++D + NRR++I + D Sbjct: 266 NTI-GLGESTPLSSNDTAAGRAINRRVEITILD 297 >gi|268595437|ref|ZP_06129604.1| ompA family protein [Neisseria gonorrhoeae 35/02] gi|268597225|ref|ZP_06131392.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599401|ref|ZP_06133568.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae MS11] gi|268601994|ref|ZP_06136161.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID18] gi|268604326|ref|ZP_06138493.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID1] gi|268682782|ref|ZP_06149644.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID332] gi|268684809|ref|ZP_06151671.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae SK-92-679] gi|268687209|ref|ZP_06154071.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae SK-93-1035] gi|268548826|gb|EEZ44244.1| ompA family protein [Neisseria gonorrhoeae 35/02] gi|268551013|gb|EEZ46032.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583532|gb|EEZ48208.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae MS11] gi|268586125|gb|EEZ50801.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID18] gi|268588457|gb|EEZ53133.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID1] gi|268623066|gb|EEZ55466.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae PID332] gi|268625093|gb|EEZ57493.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae SK-92-679] gi|268627493|gb|EEZ59893.1| OmpA/MotB domain-containing protein [Neisseria gonorrhoeae SK-93-1035] Length = 216 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + G E R G I ++ + F S+ L + L + ++I Sbjct: 77 QNLAGTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 135 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + + A +N LS RA + L GV+ R++ + G+ H ++ Sbjct: 136 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 191 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 192 GRAQNRRVEILINPDQ 207 >gi|149913687|ref|ZP_01902220.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b] gi|149812807|gb|EDM72636.1| hypothetical protein RAZWK3B_10301 [Roseobacter sp. AzwK-3b] Length = 599 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 89/258 (34%), Gaps = 16/258 (6%) Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 + + + ++ + + + + + + + Sbjct: 338 ADTALTEAEARAALLAQARDRLADQQELASEAQKQQALLNRQVAALRDQLGQLQALLDDA 397 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 +S+ E N L ++ E+ + ++ L ++ ++ L ++ + Sbjct: 398 KTREAAQDVQLQSLGNELNTALARVAAEERRRREAEEARARLLEEQNADLERYRSEFFGR 457 Query: 214 GVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI----- 266 + GI I + +F + + K+ E+ T+ I Sbjct: 458 LRDVLGAQEGIRIEGDRFVFSSEVLFAPGEAELSGAGQREVAKVAEIFRSVTDEIPEGID 517 Query: 267 ---SIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRL 320 + GHTD P R DNW LS+ RA S + ++ + G+ +R+S +GF ++ Sbjct: 518 WVLQVDGHTDDVPVRPGAAFEDNWELSMARALSVVRYMIDTLGLPPERLSA-NGFGQYQP 576 Query: 321 KIASDP--MNSANRRIDI 336 D + NRRI++ Sbjct: 577 VNPDDTPEARAQNRRIEL 594 >gi|153213818|ref|ZP_01949026.1| outer membrane protein OmpA [Vibrio cholerae 1587] gi|229524210|ref|ZP_04413615.1| outer membrane protein A precursor [Vibrio cholerae bv. albensis VL426] gi|124115742|gb|EAY34562.1| outer membrane protein OmpA [Vibrio cholerae 1587] gi|229337791|gb|EEO02808.1| outer membrane protein A precursor [Vibrio cholerae bv. albensis VL426] Length = 321 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|229513857|ref|ZP_04403319.1| outer membrane protein A precursor [Vibrio cholerae TMA 21] gi|262192122|ref|ZP_06050283.1| outer membrane protein A precursor [Vibrio cholerae CT 5369-93] gi|297580859|ref|ZP_06942784.1| outer membrane protein OmpA [Vibrio cholerae RC385] gi|229349038|gb|EEO13995.1| outer membrane protein A precursor [Vibrio cholerae TMA 21] gi|262031971|gb|EEY50548.1| outer membrane protein A precursor [Vibrio cholerae CT 5369-93] gi|297534685|gb|EFH73521.1| outer membrane protein OmpA [Vibrio cholerae RC385] Length = 321 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|124009612|ref|ZP_01694285.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC 23134] gi|123984753|gb|EAY24733.1| thrombospondin type 3 repeat:OmpA/MotB [Microscilla marina ATCC 23134] Length = 493 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNW 285 ++++ + +F +I P + VL ++ E+L ++ I + GHTD N Sbjct: 380 EVLERASKVLFAPGKAIINPVSFPVLNELSELLKKYASTKIYLEGHTDNQ---GDDDANL 436 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +LS DRA + L+K G+++ RI +GF + + NRR+D+ + ++ Sbjct: 437 KLSKDRAQAVADYLIKKGIAKSRIES-TGFGETKPIADNKTAAGRKKNRRVDMKLTNQ 493 >gi|89094432|ref|ZP_01167372.1| chemotaxis protein MotB [Oceanospirillum sp. MED92] gi|89081324|gb|EAR60556.1| chemotaxis protein MotB [Oceanospirillum sp. MED92] Length = 311 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + D+ K + L + +I +G L + +SI + R+ +F+ ++P Sbjct: 100 QEETDILKALQRELEVAFSQHIREGQL-RVVGNDLWLSI-ELRSNYLFESGGALPNILAD 157 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L++I +L + I + G TD NW LS RA + ++L + GV+ ++ Sbjct: 158 QLLEQIAGMLKDKSNPIHVEGFTDNQQISTDEFPSNWELSAARAAAVVRLLSQFGVNPEQ 217 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 ++ + G+ + ++ NRR+ I+V + Sbjct: 218 MAAV-GYGEFQPAYSNRTAEGQRLNRRVLIVVSRDE 252 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YADF+T+L AFF+VM+ I++ +++ K + L A I P + Sbjct: 16 WVISYADFITLLFAFFVVMYAISSVNEEKYKNLTDALAGVFVGLDQA---IEVNPAPGQG 72 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 S++ + I + ++ I +Q++ Sbjct: 73 KSESGFGIFIGGKHDIDVPEVTISPPDQEET 103 >gi|152990728|ref|YP_001356450.1| hypothetical protein NIS_0983 [Nitratiruptor sp. SB155-2] gi|151422589|dbj|BAF70093.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 225 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 13/135 (9%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHT 272 T ++I + N +F +S L++I +VL + I I G+ Sbjct: 94 LSITTKYVMIRLF---NDIVFKDTSYQLTDRAKQTLKEIAQVLKKLPKNQKFYIKINGYA 150 Query: 273 ---DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-M 327 DAS D W LS+ RA + LMK G+ R ISG+ R + ++P + Sbjct: 151 TIKDASKLPPDIVDAWDLSIKRAEAVAFYLMKQGIDPSRFF-ISGYGDTRPIYSWNNPLL 209 Query: 328 NSANRRIDILVEDRQ 342 N N R++I +E Q Sbjct: 210 NRRNDRVEIYIEVDQ 224 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 69/178 (38%), Gaps = 8/178 (4%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + ++ W + + D M++L+ FF++++ ++ D YF N Sbjct: 3 KKKPEECPSIPGWLVSFGDLMSLLLTFFILLYAMSTVDVTKALKFLSYFQG-EPNYKPIR 61 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 + P + K+ I + ++ ++ T + + + +F ++ Q + Sbjct: 62 ISVVPPIVPFSTNIVKKVKKRIKRILPPHA--YQLSITTKYVMIRLFNDIVFKDTSYQLT 119 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSIN-----KEENYFLPPLSKEKILAMKRKKRLQ 193 + K +L ++ K L K+ IN K+ + P + L++KR + + Sbjct: 120 DRAKQTLKEIAQVLKKLPKNQKFYIKINGYATIKDASKLPPDIVDAWDLSIKRAEAVA 177 >gi|163732302|ref|ZP_02139748.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149] gi|161394600|gb|EDQ18923.1| hypothetical protein RLO149_02587 [Roseobacter litoralis Och 149] Length = 659 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 96/273 (35%), Gaps = 17/273 (6%) Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 A+ + + +Q + +L+ E I++ + Q + ++ + + Sbjct: 384 AADTTSEVERRASLLAQARNELAQQEQISERAQRQTELLNQQVAALRTQLGDLQAVLDDA 443 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + + S + + + + + + + L + Sbjct: 444 KERDTAQQVQLQSLGSELNTALARVAAEERRRAELEEAERLRLQEEKARLEAEAARLTAE 503 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + L ++ + + G+ I + +F+ + + E + K+ Sbjct: 504 -TKNLEQYRSEFFGRLRDVLGRQEGVRIEGDRFVFSSEVLFEPARADLSAEGQQEIAKVA 562 Query: 257 EVLA--------HSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKS-GVS 305 +L+ +I + GHTD P + + DNW LS RA S + +++S G+ Sbjct: 563 RILSSIADEIPPEIDWIIRVDGHTDNLPLSGVGQFADNWELSQGRALSVVKYMVESLGIP 622 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +R++ +GF + + + NRRI++ Sbjct: 623 PNRLAA-NGFGEFQPVAVENTPQARAQNRRIEL 654 >gi|330946399|gb|EGH47480.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 213 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 15/173 (8%) Query: 178 LSKEKILAMKRKKRLQDLA----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 LS+E++ M +++ LA K S+ G ++ + + T G+++++ D Sbjct: 43 LSQERLAKMDMERQRMQLALREAKLASAQQQGRWLEDQILSLATTETDRGLVMTLGD--- 99 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + + K+ + L + + I G+TD++ +DN +LS DRA Sbjct: 100 -VLFDAGHAELKNSASRTILKVVQFLQINPRRVVRIEGYTDST---GDRQDNLKLSKDRA 155 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 + VLM GV E RI + G+ A+ + + NRR++I+ D +G Sbjct: 156 QAVADVLMDLGVDEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 207 >gi|291532054|emb|CBK97639.1| Flagellar motor protein [Eubacterium siraeum 70/3] Length = 339 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 14/193 (7%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN-IVKGV 215 + + + N PP ++ ++ + L ++ S L N + + V Sbjct: 62 VMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSFLKTTTDKNDLGQYV 121 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHT 272 E T T I I NT MFD +S++ E VL K + + I + GHT Sbjct: 122 YIEQTPTRIFIRF---NNTIMFDGNSAVLKEEGKQVLNKFMPGIKAVNKYIKSCEVSGHT 178 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNS 329 A ++ ++W LS RA S + + V ++ + + G A + + + Sbjct: 179 -AKAVSDV--NDWDLSAARASSVVKYMDYNRCVDSEKFT-VEGKACYTPIADNSTAEGRA 234 Query: 330 ANRRIDILVEDRQ 342 NRR++I++ Q Sbjct: 235 TNRRVEIMIVRAQ 247 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 G+W YAD +T+L+ FF++++ ++ D+ + I Q F T+S Sbjct: 3 KRRAGGGEEKGNWLDTYADMVTLLLCFFVLLYSASSVDETKWQYIYQSF--------TSS 54 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + E+ N D + + N+ + S + + Sbjct: 55 GSYINPFVMDEQPKNNAADTNGNAEAPPNTQNGGTTSEQTEGLPSDFNQLYSF 107 >gi|262039107|ref|ZP_06012440.1| inner membrane lipoprotein YiaD [Leptotrichia goodfellowii F0264] gi|261746896|gb|EEY34402.1| inner membrane lipoprotein YiaD [Leptotrichia goodfellowii F0264] Length = 164 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 GV E T G I + N FD +SS+ L + +VL + I + GH Sbjct: 39 SGVKVERTGEG-EIKLTAPENIT-FDTNSSVIKSRFTGSLNSVADVLKKYPDSNIIVSGH 96 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 TD++ +I LS++RA S L+ +GV RI+ + G+ ++ + Sbjct: 97 TDSTGNDSINNP---LSVNRAASVKSYLVGAGVPSSRITSV-GYGSKEPIASNSTANGRA 152 Query: 330 ANRRIDILVEDR 341 NRR++I + + Sbjct: 153 QNRRVEIKIVAK 164 >gi|304311338|ref|YP_003810936.1| Putative outer membrane protein [gamma proteobacterium HdN1] gi|301797071|emb|CBL45284.1| Putative outer membrane protein [gamma proteobacterium HdN1] Length = 208 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 10/130 (7%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 GV T GI +++ F + S +P VL+ + VL I + GHT Sbjct: 85 GVSVTRTPEGIKLNM---PGAISFPSNQSGLMPSFYPVLESVALVLKEFNNTAIKVSGHT 141 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D++ A N RLS RA S L GV+ R+ ++ G+ S+ +A Sbjct: 142 DST---GGAELNQRLSEQRAESVAAFLSGQGVARARM-QVYGYGPRYPVADNKSEAGKAA 197 Query: 331 NRRIDILVED 340 NRR++I + + Sbjct: 198 NRRVEIDILN 207 >gi|254302883|ref|ZP_04970241.1| possible outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323075|gb|EDK88325.1| possible outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 212 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + K++ + L G A+ + ++I++ F S+ L Sbjct: 74 DNQEKELKAKLQGTQAE-------VKKDGNALVINL---PGGVTFASDSANITSSFYSAL 123 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I + L + E I + G+TD++ N LS RA + Q L+ GVS RI Sbjct: 124 NGIAQSLNNYPETRIQVNGYTDST---GNDAHNQELSQRRANAVAQYLVAQGVSSSRIVA 180 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +GF ++ NRR++I + Q Sbjct: 181 -NGFGSSNPIASNSTQEGRLQNRRVEIKILPAQ 212 >gi|221640526|ref|YP_002526788.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161307|gb|ACM02287.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 228 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 18/216 (8%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + G L S NK E + + IL Sbjct: 26 SGGNPGMGAPGSYTRENPRASAGIATGAILGGLVGASASDNKLEKAVV-GAAVGGILGGA 84 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L A + +++ V T + +++++ +F S+ P+ Sbjct: 85 VGSALDRQAADLRNSIGN-------SQVSVTNTGSELVVTM---PQDILFATDSANLRPD 134 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L + + L I++ GHTD++ A N LS+ RA S VL+ +GV Sbjct: 135 LQRDLGAVAQNLLRYPNSTIAVVGHTDST---GSAAYNQDLSMRRAQSVAGVLIGNGVPS 191 Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 R+S I G + ++ + NRR+DI++ Sbjct: 192 YRVSAI-GRGEDQPIASNLTPEGRAQNRRVDIIIRP 226 >gi|162449773|ref|YP_001612140.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161160355|emb|CAN91660.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 601 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 11/180 (6%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + N P S+ A + + A D G F G Sbjct: 415 TAETAANAGSQPASRHGCPADTDGDGIPNAADACPYERGKPSEDRATHGCPFAVRIEGSQ 474 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283 I I+ Q F + PE+ +L ++ VL E +++ GHTD A+ Sbjct: 475 IVILQQVQ---FRTGRAEIEPESFELLSEVAAVLEEHPEIARVAVDGHTDNQ---GAAQA 528 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 N LS RA + L G+ R+ GF R + + NRR++ + R Sbjct: 529 NLSLSQRRALAVVAWLTAHGIDARRLEA-RGFGARRPLADNRTRDGRAKNRRVEFQIRKR 587 >gi|17549701|ref|NP_523041.1| hypothetical protein RS03061 [Ralstonia solanacearum GMI1000] gi|17431956|emb|CAD18633.1| putative outer membrane transmembrane protein [Ralstonia solanacearum GMI1000] Length = 215 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSRLENEVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE + +L+ + L+ E++ + G D R DNW LS Sbjct: 93 FALNSDQLQPEGLELLKSLAGPLSAYLRSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A D + NRR++I Sbjct: 153 KRALTVTRALIDAGIPGASVFAAA-FGSEQPVSSNADDAGRAKNRRVEI 200 >gi|149370425|ref|ZP_01890114.1| putative flagellar motor protein MotB [unidentified eubacterium SCB49] gi|149355976|gb|EDM44533.1| putative flagellar motor protein MotB [unidentified eubacterium SCB49] Length = 286 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 91/210 (43%), Gaps = 28/210 (13%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL-------AKKISSTLSGLV 207 + L S + ++ + + + +K KK L D+ AK + +++ ++ Sbjct: 68 QSLSDSNSSLEQLSNSRYQKMGNVVVSENDKIKMKKALADVDPVKLKNAKTLQDSMNLII 127 Query: 208 ADNIVKGVLFET-----------TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + N+ KG+ E T ++I+I D+ +F+ S + +L+K+ Sbjct: 128 SHNLKKGLSSEMMTDNDDIDISIDETVVMITISDKM---LFNSGSYRINAKANPLLEKLA 184 Query: 257 EVLAHST-EVISIRGHTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 ++ + + GHTD+ + A +DNW LS++R+ + + L V+ +++ Sbjct: 185 ALINSEPALEVMVEGHTDSQTVKPGAIVKDNWDLSVERSTAVIRKLQDQYNVAPEKLIA- 243 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVED 340 +G + + +D S NRR I++ Sbjct: 244 AGRSSYHPVTENDTKDGRSKNRRTRIVILP 273 >gi|322418405|ref|YP_004197628.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320124792|gb|ADW12352.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 228 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E R G + + + +FD PE L K L S I I GHTD++ Sbjct: 97 EVIRDGDKV-YVALPSGILFDVGKDTLKPEAKDALSKAVPTLRDSQTTIVIEGHTDST-- 153 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA L+ GV +++ + G+ R +A+D + NRR+ Sbjct: 154 -GSNAVNQPLSERRAGRVRDFLISQGVPGSKMAAV-GYGSTRPAVANDTEANRALNRRVQ 211 Query: 336 ILVEDRQ 342 I + + Sbjct: 212 IELSPNE 218 >gi|51894108|ref|YP_076799.1| flagellar motor protein MotB [Symbiobacterium thermophilum IAM 14863] gi|51857797|dbj|BAD41955.1| flagellar motor protein MotB [Symbiobacterium thermophilum IAM 14863] Length = 300 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 100/312 (32%), Gaps = 42/312 (13%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W + YADFMT++ F+VM+ D +++ + G+ L T I + Sbjct: 26 WMVSYADFMTLMFIVFVVMFSFARVDTAKYQSLARSL---GQALGTVGPDIAPLPTRGQE 82 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + I + D ++ + +E Sbjct: 83 GTALPIIWPERPGSLPDVPDWPA--------------HLIAPPEEEPTESAPVPPVEPPP 128 Query: 153 KGKDLCKSTDLEKSINKEENYFLP--PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 + ++ + E +P P + + ++ + + +GL++ Sbjct: 129 AEAEPADEPTDVWTVLEPEPAPVPASPRVTAPVAEPDEMAEVAEVFRAMPGVKTGLLS-- 186 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 GI++S+ + +F+ PE L +I + LA I + G Sbjct: 187 ------VALEERGIVLSV---AGSLLFEPGEYTIRPEAYPTLNEIADKLAGVELPIMVNG 237 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS 329 DAS A + L+ RA + + G+ G+ + ASD Sbjct: 238 TADASHAAGSAE-AFELAALRAGAVVRYFTETYGLPGGNFV-YFGYGDGQ--SASD---- 289 Query: 330 ANRRIDILVEDR 341 R+ I+V + Sbjct: 290 ---RVTIVVARK 298 >gi|326562151|gb|EGE12479.1| OmpA/MotB domain protein [Moraxella catarrhalis 7169] gi|326565667|gb|EGE15830.1| OmpA/MotB domain protein [Moraxella catarrhalis 12P80B1] gi|326566236|gb|EGE16388.1| OmpA/MotB domain protein [Moraxella catarrhalis 103P14B1] gi|326567112|gb|EGE17234.1| OmpA/MotB domain protein [Moraxella catarrhalis BC1] gi|326576199|gb|EGE26114.1| OmpA/MotB domain protein [Moraxella catarrhalis CO72] Length = 224 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ AK+I + G + T TG I++ F + Sbjct: 81 MERQAKQIEQQMQG------TGVTVTHDTDTG-NINLT-MPGNITFAHDDDTLNSAFLGR 132 Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ + I I GHTD++ A N LS RA S L+ GV RI Sbjct: 133 LNQLANTMNQYHETTIVIVGHTDST---GQAAYNQELSERRADSVRYYLINQGVDPYRIQ 189 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 + G+ + A++ + NRR+++++ QG Sbjct: 190 TV-GYGMRQPIASNATEAGRAQNRRVELMILAPQG 223 >gi|254286478|ref|ZP_04961435.1| outer membrane protein OmpA [Vibrio cholerae AM-19226] gi|150423427|gb|EDN15371.1| outer membrane protein OmpA [Vibrio cholerae AM-19226] Length = 321 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|261211335|ref|ZP_05925623.1| outer membrane protein A precursor [Vibrio sp. RC341] gi|260839290|gb|EEX65916.1| outer membrane protein A precursor [Vibrio sp. RC341] Length = 322 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 VA+ +V+ V T T ++ F +S+ P T+ L KI L + Sbjct: 187 APVAEPVVEKVAVTKTFT------FQHLDSSTFATASAELKPATVKKLDKIVGYLNQYPQ 240 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD++ N +LS RA + + L G+ RIS G + Sbjct: 241 AKVEVVGHTDST---GSDAYNQKLSERRAQAVAKALEAQGIDASRISA-KGLGESSPIAS 296 Query: 324 SDPMNSA--NRRIDILV 338 + NRR+++++ Sbjct: 297 NTTAEGREKNRRVELVI 313 >gi|229528782|ref|ZP_04418172.1| outer membrane protein A precursor [Vibrio cholerae 12129(1)] gi|229332556|gb|EEN98042.1| outer membrane protein A precursor [Vibrio cholerae 12129(1)] gi|327484732|gb|AEA79139.1| Outer membrane protein A precursor [Vibrio cholerae LMA3894-4] Length = 321 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|254294114|ref|YP_003060137.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] gi|254042645|gb|ACT59440.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] Length = 487 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 +I N F+ + E+ L K+ V V I + GHTD N R Sbjct: 372 LIMDANRIYFETGQATISRESGDTLDKLIAVARRCNNVAIRVEGHTDNV---GGREANVR 428 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA + L+ G + R+S I G+ + ++ + NRRI+ +V + Sbjct: 429 LSDKRAQAVADYLIGRGYPDYRLSAI-GYGSDKPAANNETPEGRARNRRIEFIVTSEE 485 >gi|258593360|emb|CBE69699.1| OmpA/MotB precursor [NC10 bacterium 'Dutch sediment'] Length = 249 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ E++ +L + E+L+ + ++I GHTD+ A N +LS RA S Sbjct: 147 FAFNSAELTTESLTILDGVAEILSKHPDLKVTIAGHTDSV---GTADYNKKLSQRRAESV 203 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 L GV+ +++ + GF + ++D + NRR+++ Sbjct: 204 RNYLASHGVNAAKLTAV-GFGEEQPIASNDEAEGRTKNRRVEL 245 >gi|221069812|ref|ZP_03545917.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] gi|220714835|gb|EED70203.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] Length = 219 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 16/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + L+ +++ + G + +T + + D + FD + Sbjct: 75 QNLEKQKREMEAATQGTGVG------VTQTADNQLKL---DIPSDISFDTGRADIKSNFA 125 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E L ++ + I GHTD++ I LSL RA S L GV+ R Sbjct: 126 PILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LSLQRAESTRNYLTSRGVNGAR 182 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 I ++ G H+ A++ + NRR++I V +R Sbjct: 183 I-QVQGMGSHQPVASNATNEGRARNRRVEIFVGER 216 >gi|296113807|ref|YP_003627745.1| OmpA/MotB domain protein [Moraxella catarrhalis RH4] gi|295921501|gb|ADG61852.1| OmpA/MotB domain protein [Moraxella catarrhalis RH4] Length = 224 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ AK+I + G + T TG I++ F + Sbjct: 81 MERQAKQIEQQMQG------TGVTVTHDTDTG-NINLT-MPGNITFAHDDDTLNSAFLGR 132 Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ + I I GHTD++ A N LS RA S L+ GV RI Sbjct: 133 LNQLANTMNQYHETTIVIVGHTDST---GQAAYNQELSERRADSVRYYLINQGVDPYRIQ 189 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 + G+ + A++ + NRR+++++ QG Sbjct: 190 TV-GYGIRQPIASNATEAGRAQNRRVELMILAPQG 223 >gi|261342420|ref|ZP_05970278.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] gi|288315055|gb|EFC53993.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] Length = 606 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAY 293 P+F SS +P++ L + + S E + I GH+D++ A N LS +RA Sbjct: 489 PLFANGSSTLMPDSEKTLLAVVPAIRRSPEKMFLIVGHSDST---GSAATNLALSAERAQ 545 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + L+ G+ ++ G R +D + NRR++I+ RQ Sbjct: 546 VIKEWLVAHTGLPAEQFI-TEGAGDTRPVANNDTKDGRAQNRRVEIIPLSRQ 596 >gi|78484731|ref|YP_390656.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78363017|gb|ABB40982.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] Length = 248 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +DL + + ++ K + E T I++ R+ F+ + +T L Sbjct: 79 EDLKPVSTEEIQQAMSKVNPKDIDIEDTPDYTKITL---RSDSFFESGRATITDKTREQL 135 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 +++GE LA + ISI G+TD+ P N+ NW LS RA + + + GV ++ + Sbjct: 136 EQLGETLAGRDQEISITGYTDSIPIENLQFPSNWELSAARAATVARTFIYMGVDKN-LVT 194 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ISG A + + S NRR+ I++ +++ Sbjct: 195 ISGKADNDAVAPNATAYGRSLNRRV-IILVNKK 226 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + ++ ++ P G+W+I AD MT LM FFLVMW+ + D D +KA + G Sbjct: 1 MSRRQRHEECPEEGGAWEIALADLMTTLMVFFLVMWLTSIVDPDKRKAFVEALVGEGAGG 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDL------SIDEHITK-NSVDLKIGSTNQKKQYQRLEN 129 S DE N P S K DL I + ++K N D+ I T + + Sbjct: 61 ENISA---DETNTPREPSIMKEDLKPVSTEEIQQAMSKVNPKDIDIEDTPDYTKITLRSD 117 Query: 130 NIFYLSNSQQSEHCKNSLTRDSE 152 + F + ++ + L + E Sbjct: 118 SFFESGRATITDKTREQLEQLGE 140 >gi|15642211|ref|NP_231844.1| outer membrane protein OmpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586239|ref|ZP_01676029.1| outer membrane protein OmpA [Vibrio cholerae 2740-80] gi|121726579|ref|ZP_01679828.1| outer membrane protein OmpA [Vibrio cholerae V52] gi|147673624|ref|YP_001217730.1| outer membrane protein OmpA [Vibrio cholerae O395] gi|153817076|ref|ZP_01969743.1| outer membrane protein OmpA [Vibrio cholerae NCTC 8457] gi|153820798|ref|ZP_01973465.1| outer membrane protein OmpA [Vibrio cholerae B33] gi|153825329|ref|ZP_01977996.1| outer membrane protein OmpA [Vibrio cholerae MZO-2] gi|153829325|ref|ZP_01981992.1| outer membrane protein OmpA [Vibrio cholerae 623-39] gi|227082337|ref|YP_002810888.1| outer membrane protein OmpA [Vibrio cholerae M66-2] gi|229507710|ref|ZP_04397215.1| outer membrane protein A precursor [Vibrio cholerae BX 330286] gi|229512095|ref|ZP_04401574.1| outer membrane protein A precursor [Vibrio cholerae B33] gi|229519230|ref|ZP_04408673.1| outer membrane protein A precursor [Vibrio cholerae RC9] gi|229607214|ref|YP_002877862.1| outer membrane protein A precursor [Vibrio cholerae MJ-1236] gi|254225790|ref|ZP_04919395.1| outer membrane protein OmpA [Vibrio cholerae V51] gi|254849343|ref|ZP_05238693.1| outer membrane protein OmpA [Vibrio cholerae MO10] gi|255747088|ref|ZP_05421033.1| outer membrane protein A precursor [Vibrio cholera CIRS 101] gi|262161368|ref|ZP_06030478.1| outer membrane protein A precursor [Vibrio cholerae INDRE 91/1] gi|262167761|ref|ZP_06035463.1| outer membrane protein A precursor [Vibrio cholerae RC27] gi|298500409|ref|ZP_07010214.1| outer membrane protein OmpA [Vibrio cholerae MAK 757] gi|2641145|gb|AAB86826.1| putative outer membrane porin [Vibrio cholerae O395] gi|9656770|gb|AAF95357.1| outer membrane protein OmpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549505|gb|EAX59531.1| outer membrane protein OmpA [Vibrio cholerae 2740-80] gi|121631032|gb|EAX63411.1| outer membrane protein OmpA [Vibrio cholerae V52] gi|125621696|gb|EAZ50025.1| outer membrane protein OmpA [Vibrio cholerae V51] gi|126512344|gb|EAZ74938.1| outer membrane protein OmpA [Vibrio cholerae NCTC 8457] gi|126521590|gb|EAZ78813.1| outer membrane protein OmpA [Vibrio cholerae B33] gi|146315507|gb|ABQ20046.1| outer membrane protein OmpA [Vibrio cholerae O395] gi|148875166|gb|EDL73301.1| outer membrane protein OmpA [Vibrio cholerae 623-39] gi|149741013|gb|EDM55082.1| outer membrane protein OmpA [Vibrio cholerae MZO-2] gi|227010225|gb|ACP06437.1| outer membrane protein OmpA [Vibrio cholerae M66-2] gi|227014109|gb|ACP10319.1| outer membrane protein OmpA [Vibrio cholerae O395] gi|229343919|gb|EEO08894.1| outer membrane protein A precursor [Vibrio cholerae RC9] gi|229352060|gb|EEO17001.1| outer membrane protein A precursor [Vibrio cholerae B33] gi|229355215|gb|EEO20136.1| outer membrane protein A precursor [Vibrio cholerae BX 330286] gi|229369869|gb|ACQ60292.1| outer membrane protein A precursor [Vibrio cholerae MJ-1236] gi|254845048|gb|EET23462.1| outer membrane protein OmpA [Vibrio cholerae MO10] gi|255735490|gb|EET90890.1| outer membrane protein A precursor [Vibrio cholera CIRS 101] gi|262023826|gb|EEY42525.1| outer membrane protein A precursor [Vibrio cholerae RC27] gi|262028679|gb|EEY47333.1| outer membrane protein A precursor [Vibrio cholerae INDRE 91/1] gi|297541102|gb|EFH77156.1| outer membrane protein OmpA [Vibrio cholerae MAK 757] Length = 321 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|326334952|ref|ZP_08201152.1| outer membrane protein OprF [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692757|gb|EGD34696.1| outer membrane protein OprF [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 376 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 15/170 (8%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN----TP 235 +E I+ ++RL + K+ + V R I + + N T Sbjct: 208 EEPIVDHVERERLPKIKKERKRITKARP----ITRVETPEEREARTIRVTKEINLYAKTI 263 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I + +L I +++ + + I GHTD + N +LS +RA + Sbjct: 264 LFDLDKAIVKTQAEFILDNIAKIMQENEDFNFVIEGHTDNT---GTPEHNLQLSQERADA 320 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 L+ G+++ R+ G+ R ++D NRR++I V + Sbjct: 321 IRAYLVNKGINKKRLEA-KGYGLSRPLESNDTERGREINRRVEINVIPDE 369 >gi|260909380|ref|ZP_05916088.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636472|gb|EEX54454.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295] Length = 280 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + IS+ D ++ S L KI ++ Sbjct: 121 LTNNLTRSLSREELKEVDVRVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 177 Query: 259 LAH-STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315 + + + G+TD P R R+NW LS RA S Q L + GV+ R++ G Sbjct: 178 IMDYQDYDVLVEGNTDNVPINRENIRNNWDLSCLRASSVVQYLQTRYGVNPKRLTA-GGR 236 Query: 316 AHHRLKIASDPM--NSANRRIDILVEDR 341 + NRR I++ + Sbjct: 237 GEFNPVATNGTEVGKQRNRRTQIIITPK 264 >gi|299069861|emb|CBJ41142.1| putative transmembrane protein, OmpA/MotB motif [Ralstonia solanacearum CMR15] Length = 215 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +++++ K + L+G +A T I I + + Sbjct: 43 ELSSRLENEVEQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE + +L+ + L+ E++ + G D R DNW LS Sbjct: 93 FALNSDQLQPEGLELLKSLAGPLSAYLRSRDEILMVSGFADDQQVHAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+ +G+ + + F + A D + NRR++I Sbjct: 153 KRALTVTRTLIDAGIPGASVFAAA-FGSEQPVSSNADDAGRAKNRRVEI 200 >gi|104780466|ref|YP_606964.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95109453|emb|CAK14154.1| putative outer membrane protein; OmpA family [Pseudomonas entomophila L48] Length = 262 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + QS T+D++ + +E+ K+ Sbjct: 21 SHDPNANLESARTNFSALQSDPQSSKVAALETKDAQDWLNKADKAYMERENEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRTAEAELKNAAAQRAQAKLDARDAQIKKLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + K+ + L + E + I G+TD+ A N Sbjct: 141 FGD----VLFDFNKANLKGSAYPNITKLAQFLQENPERKVIIEGYTDSV---GSANYNQT 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 LS RA S L+++GV RI G+ + + + NRR+++ + + Sbjct: 194 LSERRANSVRMALVRAGVDPARIVA-QGYGKEYPVADNTSNSGRAQNRRVEVTISN 248 >gi|330903399|gb|EGH33971.1| flagellar motor protein MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 50 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD 59 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W++++ Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATP 50 >gi|319787272|ref|YP_004146747.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465784|gb|ADV27516.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 226 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G TR G I++ F +S+ P+ VL + EVL + V+ + G Sbjct: 97 LQGTGVSVTRNGDNITLN-MPGNVTFGFNSANLDPQFYPVLSSVAEVLREYDKTVVEVAG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 HTD+ N RLS RA + Q L+ ++ R + G ++D Sbjct: 156 HTDSV---GGDEVNQRLSEQRANAVTQFLVSQNINPQRFITV-GAGKRYPIASNDTEAGR 211 Query: 329 SANRRIDILVED 340 +ANRR++I + Sbjct: 212 AANRRVEITLVP 223 >gi|262198395|ref|YP_003269604.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081742|gb|ACY17711.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 193 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 11/121 (9%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR 282 I I+ Q F+ ++ L E+ +L ++ ++ + + I + GHTD+ + A Sbjct: 76 RIEIMQQVQ---FEFGKAVLLEESKSLLDEVAAIMRDNPQIAKIRVEGHTDS---KGKAN 129 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 N RLS +RA S L+ GV+ +R+ GF + ++D + NRR++ + Sbjct: 130 FNLRLSRERAASVRAYLISQGVAGNRLVA-RGFGMTKPIDSNDTDDGRARNRRVEFNIVS 188 Query: 341 R 341 R Sbjct: 189 R 189 >gi|86160165|ref|YP_466950.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776676|gb|ABC83513.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 542 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286 ID + FD + ++ +L + +++A + V++I GHTD++ A N Sbjct: 428 IDIKEKVYFDTGKATIKAQSNALLDDVAKLVAANPQVGVVTIEGHTDST---GSAATNRA 484 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA S L+ GV R+ GF R ++ ANRR++ +++ Sbjct: 485 LSQKRAESVKDYLVSKGVDASRLEA-KGFGPDRPVESNKTAKGREANRRVEFTIQN 539 >gi|332291754|ref|YP_004430363.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169840|gb|AEE19095.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 471 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 29/266 (10%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G+ + P+ D +K++ G + I ++ + Sbjct: 230 AGLPEFNGCPDSDGDGIED-------SKDACPTVAGLAEFDGCPDTDGDGIPDPKDACPT 282 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLE--KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 +L + D K D N P K+ + + D+A Sbjct: 283 VAGVAALGGCPDADGDGIKDADDACPNEAGPRSNNGCPFEDKDGDGVLDKDDECPDVAGT 342 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ V+ ++ + ET +FD + + E+ L K+ V Sbjct: 343 VANNGCPEVSVEVLNELNLET-------------KKVLFDYNKASIRTESYATLDKVASV 389 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + I GHTD R N LS RA S L G+ R+ GF Sbjct: 390 MMEYPTTRFLIEGHTDD---RGRDAYNLDLSDQRAASVRSYLTGKGIPAARLES-KGFGE 445 Query: 318 HRLKIASDPMNSA--NRRIDILVEDR 341 R ++ NRR+++ + ++ Sbjct: 446 ARPVASNKTAAGRQENRRVELSILEQ 471 >gi|262274025|ref|ZP_06051837.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] gi|262221835|gb|EEY73148.1| Flagellar motor rotation protein MotB [Grimontia hollisae CIP 101886] Length = 208 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 8/130 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E R G I ++ + F + S P L + V+ + +SI GHTD++ Sbjct: 84 IEVVREGDNIRLV-MPSNITFGTNQSGISPGFYQSLDAVARVMNEYDKTFLSIEGHTDST 142 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 A N LS RA S L++S V+ R+ ++G+ + ++D + NRR Sbjct: 143 ---GDAAYNMTLSEKRAESVKSYLLRSAVNAKRLY-VTGYGETQPIASNDTSTGRAQNRR 198 Query: 334 IDILVEDRQG 343 ++I + Q Sbjct: 199 VEIQIVPNQA 208 >gi|303249271|ref|ZP_07335504.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302489310|gb|EFL49266.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 264 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 10/186 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIV 212 +D + + ++ F+ P + + K + L +++ + L+ N+ Sbjct: 66 QDKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE-NKLKYEVALLIKELITSDLNVR 124 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K +G+++ + N+ MF S+ P VL + ++L +++RG Sbjct: 125 KNSGVSNDSSGVMMQV---NNSVMFRPGSAELTPTAQKVLDGVAKILRDFKINLTVRGFA 181 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI-ASDPMN-S 329 D W LS RA +A + L +G+S R+ + G A + + + P N + Sbjct: 182 DDDEKGGPYPSKWELSAARAAAATRYLAETTGISTTRLRAV-GLADSQPLVPPTSPANKA 240 Query: 330 ANRRID 335 NRRI+ Sbjct: 241 RNRRIE 246 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 KN + + +II ++ ++ GSWK+ YADF+T LMAFFL++W++ + TK+ + Sbjct: 3 KNSDKGKTVIIYRESEGGHGGHHGGSWKVAYADFVTALMAFFLLLWLVVSLKPKTKQELS 62 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 F + + + + + + P S + I S + +++ Sbjct: 63 LVFQ---DKNVPSKEKVQNLEKVPTFISPDAIKGSPEFKLSQE 102 >gi|261415986|ref|YP_003249669.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372442|gb|ACX75187.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 700 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L I ++L + ++GHTD + N +S RA + Sbjct: 597 FKTGSAKLTASSNKTLNNIAKLLKKLPAVNLEVQGHTDDT---GSEEKNKTMSEQRAQAV 653 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + L+K G+ +R+ + G+ + + NRR++++ Sbjct: 654 VKYLVKKGIDSERLRAV-GYGSDKPIADNKTKKGRKLNRRVELV 696 >gi|254490409|ref|ZP_05103596.1| Thrombospondin type 3 repeat family [Methylophaga thiooxidans DMS010] gi|224464375|gb|EEF80637.1| Thrombospondin type 3 repeat family [Methylophaga thiooxydans DMS010] Length = 200 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 23/135 (17%) Query: 220 TRTGILISIIDQRNTPM------------FDKSSSIPLPETIVVLQKIGEVLAHSTE--V 265 T G+ I+DQ P+ F ++ E +L++ +L + Sbjct: 71 TPEGV---IVDQDGCPLAGENLLSLTGVNFAFDKAVLTEEAKTILEEAVTLLKETDGIVE 127 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + + GHTD+ A N LS RA S L G+ + + + G ++D Sbjct: 128 VRVEGHTDS--IGTEAY-NQDLSQRRAQSVVDYLTSRGIDGNNLVPV-GLGESSPVASND 183 Query: 326 --PMNSANRRIDILV 338 +ANRR+D +V Sbjct: 184 SKAGRAANRRVDFVV 198 >gi|156072292|gb|ABU45468.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327799|gb|ADL27000.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 700 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L I ++L + ++GHTD + N +S RA + Sbjct: 597 FKTGSAKLTASSNKTLNNIAKLLKKLPAVNLEVQGHTDDT---GSEEKNKTMSEQRAQAV 653 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + L+K G+ +R+ + G+ + + NRR++++ Sbjct: 654 VKYLVKKGIDSERLRAV-GYGSDKPIADNKTKKGRKLNRRVELV 696 >gi|84683658|ref|ZP_01011561.1| flagellar motor protein [Maritimibacter alkaliphilus HTCC2654] gi|84668401|gb|EAQ14868.1| flagellar motor protein [Rhodobacterales bacterium HTCC2654] Length = 617 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 16/238 (6%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 N++ R + + + + + G L + + + L Sbjct: 381 NEQMAALREQLGNLENVLDEAEAREEEAQVQVEALGSRLNSALAQVAAEQRALAASQAAL 440 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPM 236 ++E+ + ++ + + ++ L ++ + R GI I + + Sbjct: 441 AEEERARAELERAEAERLRAEAADLENYRSEFFGRLRQVLGDRDGIRIEGDRFVFSSEVL 500 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRN--IARDNWR 286 F + + ++ L I + GHTD+ PFR DNW Sbjct: 501 FPVGGADLSAAGRQQIARVAGTLRDVASEIPPEINWILRVDGHTDSQPFRGNAEYADNWE 560 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 LS RA S + + G DR+ +GF + SD +ANRRI++ + ++ Sbjct: 561 LSQARALSVVRYMQDQLGFPPDRLVA-AGFGEWQPIAEGDSDEALAANRRIELKLTEK 617 >gi|50956536|gb|AAT90783.1| conserved hypothetical protein [uncultured proteobacterium QS1] Length = 575 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S+ P T V++ + + A +I I GHTD N LS RA Sbjct: 445 SLFAPGSAELKPGSTKVLIAALVNIKAQPGWLIVIAGHTD---VTGSPEQNLELSRARAA 501 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 S + + G D + GF ++ ++D +ANRR+DI + G Sbjct: 502 SVRDWMQRMGDIPDSCFAVQGFGANQPVASNDTEVGRAANRRVDIRLVPEVG 553 >gi|167838085|ref|ZP_02464944.1| ompA family protein [Burkholderia thailandensis MSMB43] Length = 243 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 10/154 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ + + Q LA +++ L+ I G+ + G+L + R F+ S+ Sbjct: 92 EVRNEAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATL 148 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P+ +L ++ LA + + I GHTD N LS RA + L+ G Sbjct: 149 TPQGRAILDQMAAALAKMSNRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKG 205 Query: 304 VSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 ++ +++ +G + ++D + NRRI+ Sbjct: 206 IASQQLT-TTGVGPDQPIASNDSADGRARNRRIE 238 >gi|326564485|gb|EGE14711.1| OmpA/MotB domain protein [Moraxella catarrhalis 46P47B1] gi|326568376|gb|EGE18456.1| OmpA/MotB domain protein [Moraxella catarrhalis BC7] gi|326572277|gb|EGE22272.1| OmpA/MotB domain protein [Moraxella catarrhalis BC8] gi|326574291|gb|EGE24238.1| OmpA/MotB domain protein [Moraxella catarrhalis O35E] gi|326574875|gb|EGE24805.1| OmpA/MotB domain protein [Moraxella catarrhalis 101P30B1] Length = 224 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ AK+I + G + T TG I++ F + Sbjct: 81 MERQAKQIEQQMQG------TGVTVTHDTDTG-NINLT-MPGNITFAHDDDTLNSAFLGR 132 Query: 252 LQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ + I I GHTD++ A N LS RA S L+ GV RI Sbjct: 133 LNQLANTMNQYHETTIVIVGHTDST---GQAAYNQELSERRADSVRYYLINQGVDPYRIQ 189 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 + G+ + A++ + NRR+++++ QG Sbjct: 190 TV-GYGIRQPIASNATEAGRAQNRRVELMILAPQG 223 >gi|167565907|ref|ZP_02358823.1| hypothetical protein BoklE_25339 [Burkholderia oklahomensis EO147] Length = 215 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSKLDAEVKQRQMETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEV--ISIRGHTDASPFRNI---ARDNWRLSL 289 F +S P +L+ + LA + + G D R DNW LS Sbjct: 93 FALNSDELQPAGRDLLKSLAGPLAAYLKANREILMVSGFADDQQVRAGNHRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + + GV + + F + + D + NRR++I Sbjct: 153 KRALTVTRAFIAEGVPASSVFAAA-FGSEQPVSPNSDDEGRAKNRRVEI 200 >gi|56460671|ref|YP_155952.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Idiomarina loihiensis L2TR] gi|56179681|gb|AAV82403.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Idiomarina loihiensis L2TR] Length = 208 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 14/151 (9%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K +AD+ VK + + + + + F S+ VL + Sbjct: 68 MDKQEEEFREELADSGVKVIR---DGDNLRLQL---PSNITFATGSANISQSFNPVLDDV 121 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + + I GHTD++ A N +LSL+RA + L+ +GV R++ G Sbjct: 122 ARVLKKYEKTTMLIEGHTDST---GSAEYNQQLSLNRANAVRNNLVGNGVDSRRVT-TEG 177 Query: 315 FAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342 + +D + NRR+++ +V + Q Sbjct: 178 YGESMPVADNDTESGRQLNRRVELRIVPNTQ 208 >gi|296127617|ref|YP_003634869.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563] gi|296019433|gb|ADG72670.1| OmpA/MotB domain protein [Brachyspira murdochii DSM 12563] Length = 403 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 13/133 (9%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRG 270 V +T G+++ + +FD S PE + I + + + I + G Sbjct: 280 DNVTIDTVPEGLVVRL----GEILFDTDSYTLRPEAKNTIDNIVKAIKETYPDREIIVEG 335 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD + N LS RA S ++ + + D++ G A ++D + Sbjct: 336 HTDNT---GRKEYNQELSEKRAKSVADYILPN-LEHDKL-SYKGLADEEPIASNDTADGR 390 Query: 331 --NRRIDILVEDR 341 NRR+DI+++ R Sbjct: 391 QKNRRVDIIIKLR 403 >gi|150377808|ref|YP_001314403.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419] gi|150032355|gb|ABR64470.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 420 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASP 276 E+ + + + FD S P +L I L + + I GHTDA Sbjct: 64 ESMQQALQTREQYDVHGLSFDTGQSTLQPSAKPLLDDIATALKNFPDWGLRIVGHTDA-- 121 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 A N RLSL+RA + L++ G+ ++ +G +R ++ D + NRR+ Sbjct: 122 -SGSAESNERLSLERADTIKAALVERGIDAGKLLA-AGAGQNRPIASNETDEGRALNRRV 179 Query: 335 DIL 337 +++ Sbjct: 180 ELM 182 >gi|264680876|ref|YP_003280786.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|299531878|ref|ZP_07045278.1| OmpA/MotB [Comamonas testosteroni S44] gi|262211392|gb|ACY35490.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|298720053|gb|EFI61010.1| OmpA/MotB [Comamonas testosteroni S44] Length = 219 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 16/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + L+ +++ + G + +T + + D + FD + Sbjct: 75 QNLEKQKREMEAATQGTGVG------VTQTADNQLKL---DIPSDISFDTGRADIKGNFA 125 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E L ++ + I GHTD++ I LSL RA S L GV+ R Sbjct: 126 PILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LSLQRAESTRNYLTSRGVNGAR 182 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 I ++ G H+ A++ + NRR++I V +R Sbjct: 183 I-QVQGMGSHQPVASNATNEGRARNRRVEIFVGER 216 >gi|256827978|ref|YP_003156706.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577154|gb|ACU88290.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 223 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 8/144 (5%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + + + R G L+++ + F S + LP +++I + Sbjct: 76 RMMDNQEADMRQALSQSEEVAVRREGDLLALT-LKGDVTFAVDSDVVLPGLYTEIERIAQ 134 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 VL + I + GHTD++ N LS RA+S ++L++ GV+ RI+ + G+ Sbjct: 135 VLVKYPQTTIVVEGHTDST---GSDTYNQALSERRAWSVQRLLVERGVNPSRITAM-GYG 190 Query: 317 HHRLKIASDP--MNSANRRIDILV 338 R +D NRR++I V Sbjct: 191 ESRPVATNDTPEGRQMNRRVEIRV 214 >gi|108524622|ref|YP_619844.1| hypothetical protein pQKH54_47 [Plasmid QKH54] gi|99644193|emb|CAJ43326.1| hypothetical protein [Plasmid QKH54] Length = 220 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 +KG E R G + ++ + F S P L ++ + + Sbjct: 84 ESMKGSGVEVEREGDQLKLV-MPGSITFATGKSEIQPSFQYTLNQLAASFRQFQDSDLIV 142 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM- 327 GHTD+ N LS RA S Q L +GV R+ + G +D Sbjct: 143 TGHTDSV---GSYEANQVLSARRADSVSQFLRSNGVDPSRL-QTFGAGSSSPIAPNDTTE 198 Query: 328 -NSANRRIDILVEDRQG 343 + NRR++I + R G Sbjct: 199 GRAQNRRVEIKLVPRTG 215 >gi|88798977|ref|ZP_01114558.1| OmpA/MotB [Reinekea sp. MED297] gi|88778204|gb|EAR09398.1| OmpA/MotB [Reinekea sp. MED297] Length = 300 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 8/237 (3%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 +D G + + + QQ + + + + L++ + Sbjct: 65 RLDEMTGQQTELASIIQQLQGELKTLSQQQQSSAETARQAQQQLATARSRIQTLDQELKT 124 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 + ++ A + + L A T ++I Sbjct: 125 AQQSLEQARVTIHNQQRALRQTSATQASVSTELSTELAAQLSSYDRDISITTAADGTTLI 184 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN----IARDN 284 + T +F ++ + VL + EVL + + + GH DA P + N Sbjct: 185 NIPLTLLFANTNLDLANDAETVLTSLSEVLKQHPDRRVQVIGHADARPIVSDLAQTYPTN 244 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339 W LS RA L+ GVS+ R+ SG A ++ A++ S NRRI++ ++ Sbjct: 245 WELSSARASRVVTFLIDQGVSDHRLLA-SGRAANQPVRDGANEEDWSVNRRIEVQIQ 300 >gi|229522162|ref|ZP_04411579.1| outer membrane protein A precursor [Vibrio cholerae TM 11079-80] gi|229341087|gb|EEO06092.1| outer membrane protein A precursor [Vibrio cholerae TM 11079-80] Length = 321 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|124004460|ref|ZP_01689305.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123990032|gb|EAY29546.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 350 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD + + P + V L K+ ++L VI I GHTD N+ LS R Sbjct: 242 DNVSFDFNKATFRPFSKVELDKLVKLLKQYPAIVILITGHTDNI---GTDTKNFDLSQRR 298 Query: 292 AYSAY-QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 A + +L K GV DRI + G + ++ + NRR++ V + Sbjct: 299 AQTVANYLLTKGGVDPDRI-RTEGMGETQPVMSNNTNTGRALNRRVEFRVLKK 350 >gi|326404482|ref|YP_004284564.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301] gi|325051344|dbj|BAJ81682.1| hypothetical protein ACMV_23350 [Acidiphilium multivorum AIU301] Length = 456 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + L G + I KG V T +I I NT +F S+ + ++ KIG+ Sbjct: 311 VLDRLRGFLQPEITKGEVAVLGTVNAPVIRI---NNTGLFASGSATVESTALPLISKIGQ 367 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGF 315 LA + + G+TD+ P + +N LS DRA +A VL ++ + RI+ G Sbjct: 368 ALAREKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGA 427 Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQ 342 A A+ + NRRI+I++ + Sbjct: 428 ADPIATNATPQGRALNRRIEIVLIRSE 454 >gi|194336698|ref|YP_002018492.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309175|gb|ACF43875.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 229 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 15/143 (10%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D+ V+G E GI + I D +F S+ + ++K+ +L E + Sbjct: 87 DHDVEGARVERVGEGIRV-IFDS--GILFSTGSATITSTSRYNIEKLARILNRYNETSLV 143 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ N LS RA S +L VS R+S I G+ R +++ Sbjct: 144 IEGHTDSI---GSDDANQSLSERRADSVANLLEAYRVSGRRLSPI-GYGETRPVSSNETE 199 Query: 328 NSA--NRRIDILV-----EDRQG 343 NRR+++L+ RQ Sbjct: 200 YGRKLNRRVEVLIYANDDLKRQA 222 >gi|317059511|ref|ZP_07923996.1| outer membrane protein [Fusobacterium sp. 3_1_5R] gi|313685187|gb|EFS22022.1| outer membrane protein [Fusobacterium sp. 3_1_5R] Length = 204 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + R G IS+ F S+ L I +VL E I ++G Sbjct: 75 LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 133 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD++ + N LS RA S L+ GV+ +R+ GF + + + Sbjct: 134 HTDST---GSFQHNMDLSNRRANSVKHYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 189 Query: 331 --NRRIDILVEDR 341 NRR++I + + Sbjct: 190 QMNRRVEIKIAPK 202 >gi|332520949|ref|ZP_08397409.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043479|gb|EGI79675.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 442 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 28/262 (10%) Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 GI + P+ + ID E + N + + + Sbjct: 206 GIIEANGCPDADGDSVID---SEDLCPNDFGPTTMRGCPDNDGDGTPDKYDKCPTVKGAI 262 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 + D++ + K +EN P K+L + K++L +L ++ Sbjct: 263 NDDGCPRIDTDGDGIDDRFDKCPKQPGVKENQGCP-----KVLTPQEKQQLANLERQ--- 314 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L + +K + I + +F+ + PE L +I +++ Sbjct: 315 --KNLDRNAKIKQQVTN--------DINNYCKAIVFNYGKTSLSPEGKKALDEIYKIMNL 364 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + GHTD N LS RA S L+ G+S R++ G+ Sbjct: 365 QKNMKFHVTGHTDNV---GSKATNLALSEKRAASVKNYLITKGISNSRVTS-QGYGEENP 420 Query: 321 K--IASDPMNSANRRIDILVED 340 +++ NRRI+I + + Sbjct: 421 IADNSTNEGRIKNRRIEIYITN 442 >gi|194334296|ref|YP_002016156.1| OmpA/MotB domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312114|gb|ACF46509.1| OmpA/MotB domain protein [Prosthecochloris aestuarii DSM 271] Length = 229 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 10/138 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 DN V G E GI + + D +F +SS + +QK+ +L Sbjct: 82 QAEEIDNSVDGATVERVGEGIRV-VFDS--GLLFSTASSTLTSTSRYNIQKLASILNKYE 138 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + I GHTD+ N +LS +RA S +L GV RIS + G+ R Sbjct: 139 DTNVVIEGHTDSV---GTESSNQQLSENRAESVASLLRAYGVYGSRISTV-GYGETRPVA 194 Query: 323 ASDPMNSA--NRRIDILV 338 +++ NRR+++L+ Sbjct: 195 SNETAQGKKLNRRVEVLI 212 >gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] gi|161323983|gb|EDP95316.1| 30S ribosomal protein S1 [Kordia algicida OT-1] Length = 347 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 10/149 (6%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIV 250 + + S G+V + + + T I+ I + FD S ++ Sbjct: 200 QVYSDVVSAQIGIVESKEFEQTIEKITAEDIINEINSNGFISLHINFDTGKSRIKADSYE 259 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++ +I ++L + ISI GHTD N +LS +RA S L+ G+ E R+ Sbjct: 260 IISEITKMLKTNPNLKISIEGHTDN---AGDESYNMKLSKNRAKSVLMALVDEGIDESRL 316 Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDI 336 GF + +D + NRR+++ Sbjct: 317 KS-DGFGQTKPIGDNTTDKGKAKNRRVEL 344 >gi|94314001|ref|YP_587210.1| hypothetical protein Rmet_5082 [Cupriavidus metallidurans CH34] gi|93357853|gb|ABF11941.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 217 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 18/169 (10%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + L + K+R ++L ++ TL +A + G T I I + Sbjct: 41 QMELSARLENEVKQRQEELKRR--QTLEEALAGPLAAG---RVTLKDGRIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S PE +L+ + L+ E++ + G TD R R DN LS Sbjct: 93 FALNSDQLQPEGRALLKSLAAPLSAYLGARDEILMVSGFTDDQQVREGNRRFADNLELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + + L+++G+ I + F + A++ + NRR++I Sbjct: 153 QRALTVTRALIEAGLPPASIFSAA-FGSQQPVASNATEESRAKNRRVEI 200 >gi|315917803|ref|ZP_07914043.1| outer membrane protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691678|gb|EFS28513.1| outer membrane protein [Fusobacterium gonidiaformans ATCC 25563] Length = 204 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + R G IS+ F S+ L I +VL E I ++G Sbjct: 75 LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 133 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD + + N LS RA S Q L+ GV+ +R+ GF + + + Sbjct: 134 HTDNT---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 189 Query: 331 --NRRIDILVEDR 341 NRR++I + + Sbjct: 190 QMNRRVEIKIAPK 202 >gi|237748606|ref|ZP_04579086.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes OXCC13] gi|229379968|gb|EEO30059.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes OXCC13] Length = 217 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ +++ + G + + +T I +SI + F SS P+ + Sbjct: 77 MEKQKQEMQAATQGTGVE------VVQTENNMIRVSI---PSDVSFATGSSTLSPQFKTI 127 Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ + L ++ I + G+TD + N LS RA S + L+ GV+ +R + Sbjct: 128 LRDLATTLKNNPSSSIFVVGYTDNT---GSDSVNLPLSRKRAMSVMEYLVSQGVAANRFT 184 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G ++ + NRR++I V ++ Sbjct: 185 -VEGMGSKDPIASNATAEGRAQNRRVEIYVGQKK 217 >gi|288929697|ref|ZP_06423541.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329202|gb|EFC67789.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 295 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L+ ++ +K V + + IS+ D ++ S L KI ++ Sbjct: 136 LTNNLTRSLSREELKEVDVRVLKGVVYISLADNM---LYKSGSYEINDRAAETLSKIAKI 192 Query: 259 LAH-STEVISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315 + + + G+TD P R R+NW LS RA S Q L + GV+ R++ G Sbjct: 193 IMDYQDYDVLVEGNTDNVPITRENIRNNWDLSCLRASSVVQYLQTRYGVNPKRLTA-GGR 251 Query: 316 AHHRLKIASDPM--NSANRRIDILVEDR 341 + NRR I++ + Sbjct: 252 GEFNPVATNGTEVGKQRNRRTQIIITPK 279 >gi|262195177|ref|YP_003266386.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262078524|gb|ACY14493.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 490 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 23/265 (8%) Query: 78 TASKGIFDEQ----NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 T GIFDE N PE N D E + G T+ Q ++ Sbjct: 210 TDGDGIFDESDQCPNEPEDMDGNADDDGCPEEEPP-ADTDGDGMTDDVDQCPNEAEDVDG 268 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 S+ N + S + E+ + I+ + + Sbjct: 269 FSDEDGCPDLDNDGDGIPDASDQCSDSAEDPDGFADEDGCPDEDNDGDGIVDAADQCMNE 328 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 G + + + + GI F +S LP + VL Sbjct: 329 PETANGYQDGDGCPDEIPEEVKNYTGSIEGIR-----------FANNSDRILPVSRKVLD 377 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +L + + I GH+D R N LS RA + L+ GV + R+ + Sbjct: 378 EAARILVEYPDLRVEISGHSDD---RGKRDFNIDLSKRRAEAVRVYLVGKGVEDSRLVSM 434 Query: 313 SGFAHHRLKIAS--DPMNSANRRID 335 GF R + + + + NRR++ Sbjct: 435 -GFGPDRPLVENTSNANRAKNRRVE 458 >gi|257466649|ref|ZP_05630960.1| Outer membrane protein [Fusobacterium gonidiaformans ATCC 25563] Length = 217 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + R G IS+ F S+ L I +VL E I ++G Sbjct: 88 LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD + + N LS RA S Q L+ GV+ +R+ GF + + + Sbjct: 147 HTDNT---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 202 Query: 331 --NRRIDILVEDR 341 NRR++I + + Sbjct: 203 QMNRRVEIKIAPK 215 >gi|148261080|ref|YP_001235207.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146402761|gb|ABQ31288.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 456 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + L G + I KG V T +I I NT +F S+ + ++ KIG+ Sbjct: 311 VLDRLRGFLQPEITKGEVAVLGTVNAPVIRI---NNTGLFASGSATVESTALPLISKIGQ 367 Query: 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGF 315 LA + + G+TD+ P + +N LS DRA +A VL ++ + RI+ G Sbjct: 368 ALAREKGKVQVIGYTDSQPIHTLRFPNNLVLSEDRAKAAAAVLDRAIGDQSRITAEGRGA 427 Query: 316 AHHRLKIASDPMNSANRRIDILVEDRQ 342 A A+ + NRRI+I++ + Sbjct: 428 ADPIATNATPQGRALNRRIEIVLIRSE 454 >gi|257452971|ref|ZP_05618270.1| Outer membrane protein [Fusobacterium sp. 3_1_5R] Length = 217 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + R G IS+ F S+ L I +VL E I ++G Sbjct: 88 LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD++ + N LS RA S L+ GV+ +R+ GF + + + Sbjct: 147 HTDST---GSFQHNMDLSNRRANSVKHYLIGQGVASNRLMS-QGFGPNNPVADNSTPDGR 202 Query: 331 --NRRIDILVEDR 341 NRR++I + + Sbjct: 203 QMNRRVEIKIAPK 215 >gi|261821727|ref|YP_003259833.1| hypothetical protein Pecwa_2465 [Pectobacterium wasabiae WPP163] gi|261605740|gb|ACX88226.1| type IV / VI secretion system protein, DotU family [Pectobacterium wasabiae WPP163] Length = 413 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +S+ VV++++ E + + + + G++D P R+ N+ Sbjct: 282 SVVTLKGDGLFASASTDVRGRYDVVIKRVAEAMNNVRGKVLVIGYSDNVPIRSARFASNY 341 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 LSL RA S +L + R++ +G + + + + NRR++I + Sbjct: 342 ELSLARAQSVQTLLQQQLTQPSRVTA-AGRGENHPLVPNTNAENRARNRRVEITLL 396 >gi|183179549|ref|ZP_02957760.1| outer membrane protein OmpA [Vibrio cholerae MZO-3] gi|183012960|gb|EDT88260.1| outer membrane protein OmpA [Vibrio cholerae MZO-3] Length = 321 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P T+ L KI L + + + GHTD++ N +LS R Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTDST---GSEAYNQKLSERR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RIS G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIDASRISA-KGLGESSPIASNATAEGREKNRRVELVI 312 >gi|302339235|ref|YP_003804441.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301636420|gb|ADK81847.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 340 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S+ PE+ L +I +L + I GHT R LSL RA S Sbjct: 240 FKPDSAELTPESGEELSRIASILKKKRIEVEIAGHTADVGDRASQYT---LSLQRAESVK 296 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + L+ GV E R+ + G+ R ++D + NRR++ LV Sbjct: 297 RTLVSLGVKERRL-SVKGYGGSRPIASNDSQEGRAQNRRVEFLV 339 >gi|53723969|ref|YP_104341.1| OmpA domain-containing protein [Burkholderia mallei ATCC 23344] gi|67640679|ref|ZP_00439477.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|121600594|ref|YP_991404.1| ompA family protein [Burkholderia mallei SAVP1] gi|124386056|ref|YP_001027695.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126450255|ref|YP_001082667.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|167001412|ref|ZP_02267211.1| ompA family protein [Burkholderia mallei PRL-20] gi|167908671|ref|ZP_02495876.1| ompA family protein [Burkholderia pseudomallei NCTC 13177] gi|217424718|ref|ZP_03456215.1| ompA family protein [Burkholderia pseudomallei 576] gi|237814018|ref|YP_002898469.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|254174698|ref|ZP_04881359.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|254201416|ref|ZP_04907780.1| ompA family protein [Burkholderia mallei FMH] gi|254206758|ref|ZP_04913109.1| ompA family protein [Burkholderia mallei JHU] gi|254357247|ref|ZP_04973521.1| ompA family protein [Burkholderia mallei 2002721280] gi|52427392|gb|AAU47985.1| OmpA domain protein [Burkholderia mallei ATCC 23344] gi|121229404|gb|ABM51922.1| ompA family protein [Burkholderia mallei SAVP1] gi|124294076|gb|ABN03345.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126243125|gb|ABO06218.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|147747310|gb|EDK54386.1| ompA family protein [Burkholderia mallei FMH] gi|147752300|gb|EDK59366.1| ompA family protein [Burkholderia mallei JHU] gi|148026311|gb|EDK84396.1| ompA family protein [Burkholderia mallei 2002721280] gi|160695743|gb|EDP85713.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|217392174|gb|EEC32199.1| ompA family protein [Burkholderia pseudomallei 576] gi|237502962|gb|ACQ95280.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|238521446|gb|EEP84897.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|243062825|gb|EES45011.1| ompA family protein [Burkholderia mallei PRL-20] Length = 310 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 220 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305 >gi|254494341|ref|ZP_05107512.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|226513381|gb|EEH62726.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] Length = 216 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + E R G I ++ + F S+ L + L + ++I Sbjct: 77 QNLADTQIEIQRQGNQIRLV-MPESVTFATGSAALGGSAQYALNTAAQTLVQYPDTTLTI 135 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + + A +N LS RA + L GV+ R++ + G+ H ++ Sbjct: 136 NGHTDNT--GSDAVNN-PLSQHRAQAVAYYLQTRGVAASRLT-VYGYGSHMPVASNATVE 191 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 192 GRAQNRRVEILINPDQ 207 >gi|107024166|ref|YP_622493.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|105894355|gb|ABF77520.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] Length = 247 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++TL+ I G+ + G+L + R F+ S+ P+ Sbjct: 100 EAQRQQLASDMANTLNPTYT--IKNGLRVSASEQGVLDQTLANRTIE-FETGSATLTPQG 156 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 ++L ++ LA + I GHTD N LS RA + L+ + Sbjct: 157 KLILDQMAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQ 213 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 214 QMT-TTGVGPDQPIAPNDMADGRARNRRIE 242 >gi|209809374|ref|YP_002264912.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] gi|208010936|emb|CAQ81341.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] Length = 212 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 76/199 (38%), Gaps = 13/199 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 N+L + K K+ E + + + + +++ + + + Sbjct: 20 SNNLLDTAPKTKEDAPYPTFEDPYVESQEKVIDVVDSKEVTSALTGPNGELKDDDMRKVA 79 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 L IV E + ++I+I ++ + F + + P +L ++ ++A Sbjct: 80 EQLTQMGIVYH---EMSDDQLVITIQEKVH---FASAQATLTPLATSLLNQLISIMATKP 133 Query: 264 EVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 E+ + GHTD A +N LS R+ + L+ + ++ ++ GF + Sbjct: 134 ELALVLDGHTD---ISGNAINNQNLSEKRSNEVRRYLLDNNLNASQLYS-RGFGEYLPLC 189 Query: 323 ASDPMNSA--NRRIDILVE 339 ++ NRR++I V Sbjct: 190 DNETTLGRKCNRRVEITVL 208 >gi|149925042|ref|ZP_01913359.1| outer membrane protein, OmpA/MotB family [Plesiocystis pacifica SIR-1] gi|149814084|gb|EDM73711.1| outer membrane protein, OmpA/MotB family [Plesiocystis pacifica SIR-1] Length = 233 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 13/130 (10%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTD 273 E T + I+I +F+ + E+ ++ +I +V + +S+ GHTD Sbjct: 58 RVEVTASAIVI-----NEKILFEVDKAEIRSESFSLMDEITKVFIDNPRIKKVSVEGHTD 112 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--AN 331 + +R N +LS RA S L++ GV+++R+ + G + +D N Sbjct: 113 SD---GSSRYNKKLSQKRADSVMAYLVEHGVAQERLEAV-GHGEEKPIADNDTDEGKEKN 168 Query: 332 RRIDILVEDR 341 RR++ ++ ++ Sbjct: 169 RRVEFIILEQ 178 >gi|108759341|ref|YP_630319.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108463221|gb|ABF88406.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 639 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 11/115 (9%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIAR 282 I I + +F+ S++ ++ +L ++ VL + + I GHTD R Sbjct: 492 RIRI---KGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDN---RGSRA 545 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA S + L+ G++ R+S GF +D + NRR+D Sbjct: 546 LNMGLSDRRAKSVLEYLVAKGIARKRLSS-KGFGFDNPIATNDTALGRAKNRRVD 599 >gi|313205418|ref|YP_004044075.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312444734|gb|ADQ81090.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 598 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 94/275 (34%), Gaps = 21/275 (7%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + SK I PP + + + + ++ I D + + ++++ Sbjct: 322 SVSKSIDTSALPPNSIAVSSVIKTPEQQIAIPENDFNKNNQSLSTISPNIKSDTVSNKLQ 381 Query: 138 QQSEHCKNS------LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 S+ + ++ S + S+NK + +S + + + + Sbjct: 382 SGSKSIVENYNSPKVISNTSTASSGQSEKVSTVDSVNKTASRLPVDISIANVSSSTQGNK 441 Query: 192 LQDLAKKISSTLSGLVAD--------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + + + + S G + + I++ I FD Sbjct: 442 VVENSVNVDSDGDGTPDNLDMCPNLAGVASNRGCPEISRRIILLFIKALTGIKFDSGKDK 501 Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L +I + L + I + GHTD+ + +R N LS RA + L++ Sbjct: 502 LKKRSYTILNEIAKELIKNPAYFIEVHGHTDS---KGNSRANKLLSELRASAVRNYLIRR 558 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 GV +RI + G+ + + NRR++ Sbjct: 559 GVDGNRIKSV-GYGDKMPVATNKTVKGRTLNRRVE 592 >gi|17547099|ref|NP_520501.1| hypothetical protein RSc2380 [Ralstonia solanacearum GMI1000] gi|17429400|emb|CAD16087.1| probable bacterial outer membrane transmembrane protein [Ralstonia solanacearum GMI1000] Length = 209 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 11/144 (7%) Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S L D G G + ++I + FD S++ P L + E L+ Sbjct: 73 SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAETLSQH 129 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E ++ GHTD++ N LS RA S L GV+ +R+S G + Sbjct: 130 PELAANVVGHTDST---GNPNYNMSLSQRRAQSVASYLTDRGVARNRMSA-EGRGQTQPV 185 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 A++ + NRR++I ++ QG Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209 >gi|254447387|ref|ZP_05060853.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015] gi|198262730|gb|EDY87009.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015] Length = 204 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 16/168 (9%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 + + + L+ ++ L +AD + G T I I +F +S+ Sbjct: 38 AIQFELTQDLEAEKQR-RQALERALADPLASG---RITFQDGRIGIS---GNLLFRINSA 90 Query: 243 IPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAY 296 VLQ + E L E++ + G TD N+ RDNW LS RA + Sbjct: 91 DLQSGGNQVLQDLAEPLKVYLSQHDELLMVSGFTDDLSLHEDNLYRDNWGLSAQRALTVT 150 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 + L++ G+ +DR+ + F + + + + NRR++I R+ Sbjct: 151 RTLVEQGLPQDRLFAAA-FGANAPTVPNRDAASRAKNRRVEISTVPRR 197 >gi|167572993|ref|ZP_02365867.1| hypothetical protein BoklC_24368 [Burkholderia oklahomensis C6786] Length = 215 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS +K+++ K + L+G +A T I I + + Sbjct: 43 ELSSRLDAEVKQRQMETQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEV--ISIRGHTDASPFRNI---ARDNWRLSL 289 F +S P +L+ + LA + + G D R DNW LS Sbjct: 93 FALNSDELQPAGRDLLKSLAGPLAAYLKANREILMVSGFADDQQVRAGNHRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + + GV + + F + + D + NRR++I Sbjct: 153 KRALTVTRAFIAEGVPASSVFAAA-FGSEQPVSPNSDDEGRAKNRRVEI 200 >gi|83717671|ref|YP_439345.1| hypothetical protein BTH_II1148 [Burkholderia thailandensis E264] gi|167577759|ref|ZP_02370633.1| hypothetical protein BthaT_06461 [Burkholderia thailandensis TXDOH] gi|167615886|ref|ZP_02384521.1| hypothetical protein BthaB_06301 [Burkholderia thailandensis Bt4] gi|257142466|ref|ZP_05590728.1| hypothetical protein BthaA_25103 [Burkholderia thailandensis E264] gi|83651496|gb|ABC35560.1| ompA family protein [Burkholderia thailandensis E264] Length = 215 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +++++ K + L+G +A T I I + + Sbjct: 43 ELSSKLDAEVRQRQWESQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P +L+ + LA + E++ + G D R R DNW LS Sbjct: 93 FALNSDELQPAGRDLLKSLAGPLAAYLDANHEILMVSGFADDLQVRAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDI 336 RA + + + GV + + F + + D + NRR++I Sbjct: 153 KRALTVTRAFIDEGVPASSVFAAA-FGSEQPVSPNSDDAGRAKNRRVEI 200 >gi|238798865|ref|ZP_04642332.1| hypothetical protein ymoll0001_31770 [Yersinia mollaretii ATCC 43969] gi|238717266|gb|EEQ09115.1| hypothetical protein ymoll0001_31770 [Yersinia mollaretii ATCC 43969] Length = 575 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S+ P T V++ + + A +I + GHTD + N LSL RA Sbjct: 443 SLFDVGQSMLKPGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDDKSNQTLSLKRAE 499 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + +G + + G+ R ++D + NRR++I + + Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGQSRPLKSNDTEAGRALNRRVEISLVPQ 549 >gi|183222506|ref|YP_001840502.1| hypothetical protein LEPBI_I3161 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912543|ref|YP_001964098.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777219|gb|ABZ95520.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780928|gb|ABZ99226.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 475 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 10/127 (7%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 V TT GI+ S+ ++ +FD + S + + KI E+L + I + GHTD Sbjct: 353 VKVRTTEDGIVFSL----DSILFDFNDSKLKVDAESAVAKIAEILKKYPDREIRVSGHTD 408 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 N +LS +RA S L+ + +++ G+A +D + N Sbjct: 409 NI---GKKEYNQKLSEERAKSVLHSLVDNHKMDEKHISFRGYADEFPVAPNDSEENRHKN 465 Query: 332 RRIDILV 338 RR++I + Sbjct: 466 RRVEITL 472 >gi|134283190|ref|ZP_01769891.1| ompA family protein [Burkholderia pseudomallei 305] gi|134245385|gb|EBA45478.1| ompA family protein [Burkholderia pseudomallei 305] Length = 312 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 165 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 221 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 222 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 278 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 279 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 307 >gi|42524036|ref|NP_969416.1| outer membrane protein [Bdellovibrio bacteriovorus HD100] gi|39576244|emb|CAE80409.1| probable outer membrane protein [Bdellovibrio bacteriovorus HD100] Length = 440 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 111/292 (38%), Gaps = 20/292 (6%) Query: 53 IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112 I++ D K++ + + K+ + +K +++ P+ + E + K Sbjct: 164 IVSRYRDLELKSVTKAYLGTAKDNLDTAKKAGADKSAPKSFGMAAMKYENAEKLIKADPR 223 Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + R ++ ++ + L +E+ + + E S ++E Sbjct: 224 NAPVIARASQDATRESQHLMEVTRKVNA-GNSEELVLMAERQQRTISNLRSEYSSTEQEL 282 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 + ++ + + +++++ L + A+ + S L A+ + G+ Sbjct: 283 QTVQSEAERQRMELEKQQTLLNRAQALRSQLKPNEAEVFTENGKLMVRLKGLQ------- 335 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F + S P+ +L+K+ LA + + I GHTD A N LS R Sbjct: 336 ----FPTAQSNLGPKNQALLKKVEGALAGVTPKKVIIEGHTDNV---GSAEANRILSEKR 388 Query: 292 AYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A S L+ G + +++ + G + ++ + NRRID+++E Sbjct: 389 AQSVENFLVSQGTLPAEKVESV-GMGYDNPVGNNNTAAGRAQNRRIDLVIET 439 >gi|218886501|ref|YP_002435822.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757455|gb|ACL08354.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 194 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P P + L + + + + +S+ GH+D+ N +LS+ RA + Sbjct: 93 FPTGSTEPEPTSRPALDEAADNIKCRAVSNVSVIGHSDS---AGDPAANQKLSMARAEAV 149 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 ++L GV + +SG + + + P + NRR++ILV Sbjct: 150 RRMLEARGVPAGAM-ALSGHGANDPLVPTAPGVAEARNRRVEILV 193 >gi|78484704|ref|YP_390629.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78362990|gb|ABB40955.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2] Length = 241 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 31/156 (19%) Query: 215 VLFETT-RTGILISIIDQRNTP--MFDKSSSIPLPETIVVLQKIGEVLAHS--------- 262 + E T GI I++ ++ + +F + P + + + L Sbjct: 80 LHIENTLSKGIKITMQEEVFSSQDLFASGRAKINPRYLPYINRFVGFLNQLKLETFQQRH 139 Query: 263 --------------TEVISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVL-MKSGVS 305 + I GHTDA+P + + N+ LS RAY+ VL + SG+ Sbjct: 140 PLQVKSITRPGESFQVTVRIEGHTDATPLAKTALYQSNFELSTFRAYAIMNVLQIYSGLP 199 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 E + I+G+ + +P +S NRR++I + + Sbjct: 200 ES-LFSIAGYGSFHP-VTRNPYDSKNRRVEIYLIPQ 233 >gi|330815362|ref|YP_004359067.1| OmpA/MotB [Burkholderia gladioli BSR3] gi|327367755|gb|AEA59111.1| OmpA/MotB [Burkholderia gladioli BSR3] Length = 345 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 92/264 (34%), Gaps = 16/264 (6%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + N + + + + + + + Sbjct: 82 VLTGTNVANGAGSGQATGAGTGATVSAPAPANATPGQVVAGGKVPDEATKAAVLQKLRDT 141 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI------LAMKRKKRLQDLA 196 D + D+ + ++ K L +SK ++ + ++ + R + L Sbjct: 142 YGAGNVVDQIEVGDVTTPPNWSANVQKLIGPQLKQISKGQLKIDGTSIDVRGEVRNEALR 201 Query: 197 KKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++++S ++ + I + + GIL + R F+ S+ P+ +L + Sbjct: 202 QQVASDMANQLNPTYTIRNALRVSASEQGILDQTLANRTIE-FETGSATLTPQGRAILDQ 260 Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + ++ ++I GHTD N LS RA + L+ G++ +++ + Sbjct: 261 MADAMSKLANRQVTIIGHTDN---SGNRATNISLSQARADAVKGYLVAKGIASQQLT-TT 316 Query: 314 GFAHHRLKIASDP--MNSANRRID 335 G + ++D + NRRI+ Sbjct: 317 GVGPDQPIASNDTADGRARNRRIE 340 >gi|84685261|ref|ZP_01013160.1| OmpA family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666993|gb|EAQ13464.1| OmpA family protein [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 19/156 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPET 248 +L A + S+LS I G + GI +F S+ P Sbjct: 84 NQLDKQAGDLRSSLSNSSIQVINTGSYLKVVMPQGI-----------LFPTDSADVSPAL 132 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 L+ + E L + + GHTD + A N LS RA + V+ +GV Sbjct: 133 YPDLRALAENLREYPNSSVQVVGHTDNT---GQASYNLTLSQRRAQAVLGVIQSNGVGAA 189 Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 R+ + G + + NRR+++L+ R Sbjct: 190 RLQAV-GKGDSEPVATNLTPEGRAQNRRVEVLIIPR 224 >gi|215433387|gb|ACJ66659.1| OmpA domain protein [Myxococcus fulvus HW-1] Length = 620 Score = 86.1 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 18/233 (7%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 ++ + + + + + + + + Sbjct: 385 QDEDGCPDDPNAHQPSAEERQPSAPPAPLTLPPPPVDTDGDGLVDSEDLCPNAAEDTDGF 444 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFETTRTGILI 226 E+ P ++ I + + L+ + T++G+ D+ G I Sbjct: 445 EDEDGCPDPDNDQDGIPDAEDQCPLE------AETINGVKDDDGCPDKGKARVRVEGARI 498 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDN 284 I+D F + L + +L+++ L + E + + GHTD N Sbjct: 499 VILD---KVYFATGRDVILARSHSLLRQVASTLKANPRIERVRVEGHTDDQ---GAEAKN 552 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 LS RA + L+K G++ +R+ + G+ + + NRR++ Sbjct: 553 LDLSQRRAKNVVDFLVKVGIAAERLEAV-GYGEAKPVDTNKTAKGRENNRRVE 604 >gi|330993347|ref|ZP_08317282.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] gi|329759377|gb|EGG75886.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] Length = 407 Score = 86.1 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + ++ + + H T I + G+TD A P + N LSL R Sbjct: 299 FFDWDGAALTGRAREIVAEAAQASTHVQTTRIEVNGYTDNSAAQPGPRGQQYNLGLSLRR 358 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV I + G+ R + + D NRR++I++ Sbjct: 359 ADSVKAELIRDGVPASAIG-VQGYGEARPLVPTGPDTREPQNRRVEIIL 406 >gi|86750700|ref|YP_487196.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86573728|gb|ABD08285.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 451 Score = 86.1 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S+ ++ VL+++ EV+AH I + GHTDA N LS RA + Sbjct: 350 FMRGSAEIAQASLPVLKQLAEVIAHCPAATIEVAGHTDA---AGKKAANEALSKRRAEAV 406 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 L K+G+ +++ + G+ + A+D + NRRI+ +V+ Sbjct: 407 ADNLTKAGIGSAKLTAV-GYGASKPLAANDSADGRAKNRRIEFVVK 451 >gi|296329053|ref|ZP_06871559.1| proteobacterial sortase system OmpA family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153857|gb|EFG94669.1| proteobacterial sortase system OmpA family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 208 Score = 86.1 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + +++ + L G A ++I++ F S+ L Sbjct: 70 DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANITSGFYSAL 119 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I + L + E I + G+TD + N LS RA + Q L+ GVS +RI Sbjct: 120 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVSSNRIVA 176 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +GF ++ NRR++I + Q Sbjct: 177 -NGFGSSNPIASNSTPEGRLQNRRVEIKILPAQ 208 >gi|260460699|ref|ZP_05808949.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] gi|259033276|gb|EEW34537.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] Length = 216 Score = 86.1 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270 ++G TR+G I I++ + F+ P VL + VL + + G Sbjct: 88 LEGTGVSVTRSGDQI-ILNMPSDITFNSDQDAVKPGFYQVLNSVALVLKKFKQTTVDVFG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ + N+ LS RA + L GV + R ++GF R ++ Sbjct: 147 HTDST---GGDQHNFDLSQRRALAVANYLAGQGVDQRRF-AVTGFGKTRPVASNATSEGR 202 Query: 329 SANRRIDI 336 + NRR++I Sbjct: 203 AQNRRVEI 210 >gi|304309686|ref|YP_003809284.1| outer membrane porin f precursor [gamma proteobacterium HdN1] gi|301795419|emb|CBL43617.1| outer membrane porin f precursor [gamma proteobacterium HdN1] Length = 353 Score = 86.1 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P +QKI + + + ++I GHTD + A N RLS RA S Sbjct: 244 FATGSSAVAPRYHAEVQKIADFMKKYPDLTVTIEGHTDNT---GGAALNERLSSARANSV 300 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + L+ GV+ +R++ + G+ R ++ NRR+ + V +++ Sbjct: 301 REELVNRFGVAANRVTSV-GYGPSRPVASNATAAGRQENRRV-VAVLEKE 348 >gi|319794434|ref|YP_004156074.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315596897|gb|ADU37963.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 331 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + PE+ L ++ + + + +S+ GHTDA A+ N LS RA + Sbjct: 229 LFDLDKDVIRPESQPTLDEMTKLMRNNPPLKLSVVGHTDAQ---GEAKHNDDLSKRRAVA 285 Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337 VL+K+GV R ++ +G A ++ + NRR++++ Sbjct: 286 VIGVLVKAGVDPRRFTTRGAGAAEPVAPNDNEAGRAKNRRVELV 329 >gi|257462480|ref|ZP_05626892.1| Outer membrane protein [Fusobacterium sp. D12] Length = 217 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + R G IS+ F S+ L I +VL E I ++G Sbjct: 88 LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ + N LS RA S Q L+ GV+ +R++ GF + + Sbjct: 147 HTDST---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLTS-QGFGPNNPVADNSTPEGR 202 Query: 329 SANRRIDILVEDR 341 NRR++I + + Sbjct: 203 QMNRRVEIKIAPK 215 >gi|325983492|ref|YP_004295894.1| OmpA/MotB domain-containing protein [Nitrosomonas sp. AL212] gi|325533011|gb|ADZ27732.1| OmpA/MotB domain protein [Nitrosomonas sp. AL212] Length = 227 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+++ +++ + +G + +T + ++I + FD + P Sbjct: 73 QRMEEQKREMETATAGTGVQ------VTQTEDNRLKLNI---PSDISFDTGRADIKPGFR 123 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L L + + I GHTD++ I LS++RA S L+ GVS R Sbjct: 124 PILDNFATTLISNEGTAVKIIGHTDSTGSDAINNP---LSVNRAASTRDYLVSRGVSIKR 180 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 I +I G +D + NRR++I V + Q Sbjct: 181 I-QIDGRGSREPMAENDTPENRAENRRVEIFVTETQ 215 >gi|124004728|ref|ZP_01689572.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123989851|gb|EAY29380.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 513 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S ++ +L + + + E I + GHT N RLS RA + Sbjct: 403 FKLGSDELDEKSKALLDSVAQKMMEFPEAEIEVSGHTCNI---GTKAGNLRLSKKRAEAV 459 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334 + LM+ G+ RI K +G+A +R + ++P NRR+ Sbjct: 460 RKYLMEYDGIDPKRI-KTAGYADNRPLVPNVNEPNRKKNRRV 500 >gi|126666113|ref|ZP_01737093.1| OmpA/MotB [Marinobacter sp. ELB17] gi|126629435|gb|EBA00053.1| OmpA/MotB [Marinobacter sp. ELB17] Length = 110 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFR----NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + L + ISI+GH+D+ ++ NW LS RA SA +VL ++G+ R Sbjct: 1 MLADALKSFPDHLISIQGHSDSRSIAPALQSLYPTNWELSASRAASAVRVLREAGIDPSR 60 Query: 309 ISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342 + + GFA R + NRRI++L+ Q Sbjct: 61 MQAV-GFADARPLVKEIDTVSRRKNRRIEVLLYPSQ 95 >gi|332701239|ref|ZP_08421327.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332551388|gb|EGJ48432.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 282 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE+ ++ +I +++ + I + GHTD A N +LS RA + Sbjct: 181 FDTGKSTIKPESRTIVDEIAKMMQENAGLKIKVEGHTDNQ---GGAESNQKLSEARAKAV 237 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 + ++ G+S R+ K +G + ++ + NRR++++ Sbjct: 238 VEAILAKGISASRL-KPAGHGQTKPIADNKNEEGRAKNRRVELV 280 >gi|167588145|ref|ZP_02380533.1| OmpA/MotB [Burkholderia ubonensis Bu] Length = 592 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD + P++ + E++ I + GHTDA N +LS+DRA Sbjct: 474 SLFDSGKAALKPDSTRAMVGALELIKAHPGKRILVAGHTDAV---GKPDRNLKLSVDRAA 530 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + L+ + G++ + I G+ R + + NRR++I + Sbjct: 531 AVRDWLVDASGIAPTQF-AIQGYGDTRPVADNATPEGRARNRRVEITLVP 579 >gi|332664792|ref|YP_004447580.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333606|gb|AEE50707.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 256 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 13/213 (6%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + K ++ ++TDL+ + E+ ++ + K ++ + Sbjct: 31 ASKEAADKALAETQTKVANLEKENTDLKTQLEAEKTRLNGEIANLRKDLDATKGQISAVQ 90 Query: 197 KKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETI 249 +K+ + + L N V G+ +G+ D R M + S Sbjct: 91 QKLDMSQAELTKVKNEVNGIFSAYKSSGLTAEERDGRLYLMTSAPMDYKTGSYALSKAQR 150 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSE 306 + ++ L + + I + GHTD+ R +DNW LS R+ + + L+K+GVS Sbjct: 151 EAVAQLATTLKSNPKLKILVEGHTDSDKVRGGAAYQDNWELSSKRSLAICRELIKNGVSP 210 Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 +++ + G K + +ANRR D++ Sbjct: 211 AQVATV-GRGETMPKADNSTKEGKAANRRSDVV 242 >gi|325287126|ref|YP_004262916.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322580|gb|ADY30045.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 343 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAH 261 +V + + + T IL I D+ + FD S ++ V+ +I +++ Sbjct: 207 SVVENKAFVQTIQKVTAEDILKEITDKGIATLHINFDTGKSRIKADSYEVISEISKMMKS 266 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + E ISI GHTD A N +LS +RA + +++ G++E R+ GF + Sbjct: 267 NPELKISIEGHTDNV---GDASSNLKLSKNRAQAVLMAIVEEGINETRLKS-EGFGQTKP 322 Query: 321 KIASDPMN--SANRRIDI 336 + + NRR+++ Sbjct: 323 LDDNTTEEGKAQNRRVEL 340 >gi|91976354|ref|YP_569013.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91682810|gb|ABE39112.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 434 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++ S+ ++ VL+++ V+AH I + GHTDA+ N LS RA + Sbjct: 333 FERGSAEIEQASLPVLKQLAAVIAHCPAAQIEVAGHTDAN---GKKAANEALSKRRAEAV 389 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L K+G+ ++ + G+ + +D + NRRI+ V+ Sbjct: 390 ADSLTKAGIGSAKLIAV-GYGSAKPLGPNDTAEARAKNRRIEFAVK 434 >gi|104782507|ref|YP_609005.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95111494|emb|CAK16214.1| putative outer membrane protein, OmpA family [Pseudomonas entomophila L48] Length = 257 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 10/232 (4%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 + ++ + L+ + + +E+ + + + + + Sbjct: 22 ATPESPRLVEAREAFSALQGKPESHRIAALETQQAQAALGKAEEASLVSRKSPEVEQLAY 81 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILISI 228 N + + L A++ + L A N +K + + T G +++ Sbjct: 82 LANRRIETAEETIRLRTAEAGMRGIEARRAEARLEVRTAQLNALKALKGKETDRGTVVTF 141 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287 D +FD + + +Q++ + L + E + + G TD++ N RL Sbjct: 142 GD----VLFDTGRAELRSHSHDDIQRLAQFLRDNPERKVRVEGFTDST---GGDALNLRL 194 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 S +RA + L + GV RI G A A NRR++++V Sbjct: 195 SENRAAAVAHALRRQGVDPARIVSAGYGKASPVASNADAHSRQLNRRVEVIV 246 >gi|319787865|ref|YP_004147340.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317466377|gb|ADV28109.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 369 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + +L + E+L + + + GHTD+ R N +LS RA + Sbjct: 260 FDYDKATLRPDAVAILSEAAEILKRYPDLRVEVAGHTDS---RGTDAYNQKLSERRAKAV 316 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L +G+ R+ G+ R + +P + NRR ++ V++ Sbjct: 317 YDYLTSNGIDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 369 >gi|298372486|ref|ZP_06982476.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275390|gb|EFI16941.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 567 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + E+ L K + L + V I+I GHTD+ R N +LS RA S Sbjct: 466 FNTNDTSLTAESNKELDKQAKFLKENPNVNITIVGHTDS---RGSDEYNLKLSEGRAVSV 522 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + L+ G++ +R+ G + +++ + NRRI+I V Sbjct: 523 MRALIDRGIAPERLKA-EGRGETQPVASNETEEGRAENRRIEIEV 566 >gi|224824498|ref|ZP_03697605.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224602991|gb|EEG09167.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 218 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 22/213 (10%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + QS+ K ++ S + + A + Sbjct: 23 TTNPQTGQSQMSKTAMYGLGAAAACGIAGAATHGSKGARNAALGCGIVGAGVGAYMDYQE 82 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 K++ L+ V + I +++ D F +S+ P Sbjct: 83 -----KQLRDKLANT-------QVGVDRVGDQIKLTMPDNIT---FAVNSAELQPSVRTA 127 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + VL + I++ GHTD + N+A N LS RA S L GV+ RI+ Sbjct: 128 LTDVSNVLTQYPDTTITVAGHTDNT--GNVAY-NQTLSQRRAQSVAGFLQSRGVAGSRIN 184 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + G+ ++ ++ + NRR++IL+ + Sbjct: 185 PV-GYGQNQPIASNTTAEGRAKNRRVEILINPK 216 >gi|237745869|ref|ZP_04576349.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229377220|gb|EEO27311.1| OmpA/MotB domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 218 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 16/153 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ +++ + G + + +T+ I +SI + F +S+ P+ + Sbjct: 77 MEKQKQEMQTATQGTGVE------VVQTSDNQIKVSI---PSDVSFATNSATISPQFKTI 127 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ + L ++ I++ G+TD + N LS +RA S L+ GV+ +R + Sbjct: 128 LRDLATTLKNNPSTSITVIGYTDNT---GSDAINQPLSRERAMSVRNYLVSQGVAANRFT 184 Query: 311 KISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 + G ++ + NRR++I V +R Sbjct: 185 -VEGRGSSDPIASNLTAAGRAENRRVEIYVGER 216 >gi|347153|gb|AAC36899.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + + GHTD+ N +LS RA + Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPDTNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K GV+ RI+ + G+ R A++ + NRR++ Sbjct: 275 KQVLVKDGVAPSRITSV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|254486344|ref|ZP_05099549.1| flagellar motor protein [Roseobacter sp. GAI101] gi|214043213|gb|EEB83851.1| flagellar motor protein [Roseobacter sp. GAI101] Length = 598 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 90/258 (34%), Gaps = 17/258 (6%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 D + + T QR + + + + + D +D Sbjct: 343 DAQKQAALLAAAQSALSQETATSAAAQRQTELLNQQVAALRGQLGELQSLLDDAVARDAV 402 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 K L+ + ++E+ A + L + + L ++ + Sbjct: 403 KEVQLQSLGSDLNTALARVAAEERRRAELEAAERKRLEAE-TKNLEQYRSEFFGRLRDLL 461 Query: 219 TTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--------HSTEVISI 268 + G+ I + +F ++ + + K+ E+L VI + Sbjct: 462 GNQAGVRIEGDRFVFSSEVLFPPGAAQLSTDGQREIAKVAEILRNIAADIPPEIDWVIRV 521 Query: 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD 325 GHTD P DNW LS RA S + ++ G++ DR++ +GF ++ D Sbjct: 522 DGHTDNQPLSGLGAFADNWELSQARALSVVKYMINFLGIAPDRLAA-NGFGQYQPVAEGD 580 Query: 326 PMNSA--NRRIDILVEDR 341 ++ NRRI++ + ++ Sbjct: 581 SESARAQNRRIELKLTEK 598 >gi|78187197|ref|YP_375240.1| OmpA family protein [Chlorobium luteolum DSM 273] gi|78167099|gb|ABB24197.1| OmpA family protein [Chlorobium luteolum DSM 273] Length = 229 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 10/133 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D V G E I + + D +F S+ + ++K+ +L + + Sbjct: 87 DRDVDGARVERVGESIRV-VFDS--GILFTTGSATITSTSRYNIEKLARILNRYPDTNMV 143 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ N LS RA S +L GVS R+S + G+ R +++ Sbjct: 144 IEGHTDSI---GSETQNQLLSERRAESVATLLKTYGVSSSRLSPV-GYGETRPVASNETE 199 Query: 328 --NSANRRIDILV 338 NRR+++L+ Sbjct: 200 TGRRQNRRVEVLI 212 >gi|85711329|ref|ZP_01042388.1| Outer membrane protein and related peptidoglycan-associated(lipo)proteins [Idiomarina baltica OS145] gi|85694830|gb|EAQ32769.1| Outer membrane protein and related peptidoglycan-associated(lipo)proteins [Idiomarina baltica OS145] Length = 188 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 + G + R G I + F S+ VL+ + VL + + I G Sbjct: 59 LSGSGVQVIRDGDNIRLQ-LPGNITFASESANISQNFYPVLEDVAAVLNKYNKTTMMIEG 117 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ A N +LSL+RA + L+ GV R++ GF + +D Sbjct: 118 HTDST---GSADYNQQLSLNRANAVRNYLVGYGVDSRRVT-TQGFGESQPIATNDTAQGR 173 Query: 329 SANRRIDILVEDRQ 342 NRR+++ + Q Sbjct: 174 QQNRRVELRIIPNQ 187 >gi|149377133|ref|ZP_01894882.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] gi|149358551|gb|EDM47024.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] Length = 222 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G R G I ++ FD + S P L+ + VL + +I I G Sbjct: 94 LEGSGVRVVRNGDEIELV-MPGNITFDVNQSSIKPSFSNTLESVALVLKEFDKTIIQIEG 152 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD++ N LS RA S L+ G+ R ++ +G+ ++D + Sbjct: 153 HTDST---GSRDYNQLLSERRAGSVRDFLLNQGIEPKR-TRATGYGPRYPIASNDTESGR 208 Query: 331 --NRRIDILVEDRQ 342 NRR+++ + Q Sbjct: 209 EQNRRVELTLVPMQ 222 >gi|238783359|ref|ZP_04627383.1| hypothetical protein yberc0001_33370 [Yersinia bercovieri ATCC 43970] gi|238715782|gb|EEQ07770.1| hypothetical protein yberc0001_33370 [Yersinia bercovieri ATCC 43970] Length = 574 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S T V++ + + A +I + GHTD + N LSL RA Sbjct: 442 SLFDVGKSELKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDDKSNQTLSLKRAE 498 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + +G + + G+ R ++D +ANRR++I + + Sbjct: 499 SVRNWMRDTGDIPESCFAVQGYGQSRPLQSNDTEAGRAANRRVEISLVPQ 548 >gi|311746197|ref|ZP_07719982.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1] gi|126576424|gb|EAZ80702.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1] Length = 640 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 FD PE++ L+++ + L ++ V I I GHTD N LSL R Sbjct: 535 ENIFFDFDKYDLKPESLSSLKRLLKFLKENSNVNILISGHTDNV---GSPSYNQELSLKR 591 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 A S Q L++ G+ R+ + G + + + NRRI + V Sbjct: 592 AQSVQQYLVEQGMHPGRVM-VEGKGDKEPMVPNTNSQNQALNRRITVKVL 640 >gi|170722686|ref|YP_001750374.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169760689|gb|ACA74005.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 270 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 20/278 (7%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F P + A G ++ + + +S L+ + + + L Sbjct: 4 FKPMAALALLALAGGLQGCASQRSAAALDDASVAFQKVKDDSAVLRSAPRDVIRAGESLA 63 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 S ++ + + L S + L + L + Sbjct: 64 RAERLSSYIGTGSDVRHYAYLSQRYSEIAGEHAKLALSQERLAKLDLERQRLQLALREAK 123 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 +Q + + + ++ L + G+++++ D +FD + Sbjct: 124 LASVQQQGEWVEAQIAALASQQA---------DRGLVMTLGD----VLFDTGRADLKNSA 170 Query: 249 IVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + K+ + L + + I G+ D + DN +LS DRA + +L+ GV E Sbjct: 171 SRTVLKLVQFLQLNPRRVVRIEGYADNT---GAPEDNLKLSRDRAQAVADMLVDLGVDEK 227 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 R+ ++ G+ AS+ + NRR++I+ D +G Sbjct: 228 RL-QVEGYGDQYPIEANASERGRAQNRRVEIVFSDDKG 264 >gi|304312291|ref|YP_003811889.1| hypothetical protein HDN1F_26630 [gamma proteobacterium HdN1] gi|301798024|emb|CBL46246.1| Hypothetical protein HDN1F_26630 [gamma proteobacterium HdN1] Length = 224 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 ++ +F+ S S + + ++K+ +VL ISI GHTD A N +LS R Sbjct: 103 DSILFESSQSNVSRKGMPFIRKVADVLNAYPRSSISIEGHTDNM---GEANYNQKLSEAR 159 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 A S L K+GV R+S +GF + + + NRR++I+V Sbjct: 160 ANSVMNALNKAGVESSRMSA-TGFGMSKPLVENTSSSNRRTNRRVEIVV 207 >gi|149925845|ref|ZP_01914109.1| outer membrane protein, OmpA/MotB family [Limnobacter sp. MED105] gi|149825962|gb|EDM85170.1| outer membrane protein, OmpA/MotB family [Limnobacter sp. MED105] Length = 222 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 9/143 (6%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + L GL + + R G + ++D +FD + S + L +I L Sbjct: 86 AALGGLFGYLVGSQIAVREQRDGSV--MLDIPGAALFDTNKSDVKAQFAGTLDQIAATLR 143 Query: 261 HSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I + G+TD++ + N LS+ RA S L G+S R++ +G Sbjct: 144 DNPNTIVCVIGYTDST---GSDQYNQDLSVRRAQSVTNFLTAKGISGARLTA-AGLGEGF 199 Query: 320 LKIASDPM--NSANRRIDILVED 340 ++D + NRR+++ V + Sbjct: 200 PVASNDTESGRAQNRRVEMYVRN 222 >gi|76809643|ref|YP_335000.1| OmpA family domain-containing protein [Burkholderia pseudomallei 1710b] gi|226198194|ref|ZP_03793765.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|254190435|ref|ZP_04896943.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|254259878|ref|ZP_04950932.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|254300689|ref|ZP_04968134.1| ompA family protein [Burkholderia pseudomallei 406e] gi|76579096|gb|ABA48571.1| OmpA family domain protein [Burkholderia pseudomallei 1710b] gi|157810473|gb|EDO87643.1| ompA family protein [Burkholderia pseudomallei 406e] gi|157938111|gb|EDO93781.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|225929714|gb|EEH25730.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|254218567|gb|EET07951.1| ompA family protein [Burkholderia pseudomallei 1710a] Length = 310 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 163 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 219 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 220 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 276 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 277 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 305 >gi|90406796|ref|ZP_01214988.1| flagellar motor protein [Psychromonas sp. CNPT3] gi|90312033|gb|EAS40126.1| flagellar motor protein [Psychromonas sp. CNPT3] Length = 307 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 14/183 (7%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 D +I E + +K L+ L ++ LS + + ++K + Sbjct: 85 EDSGPAIRSEGMINQANDELSDVDTLKAGWELKQLKTELEVLLSSEIDEEVLK---LDLD 141 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + I + +F S L L KI E L ++ IRG+TD + + Sbjct: 142 GDWLTIEM---GGDLLFAGGSHTLLIAAKKRLNKISEALKPINNLLRIRGYTDNNLIADE 198 Query: 281 AR-DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS----DPMNSANRRID 335 NW LS RA+S L G+ R+ + + + L + D + S RR+ Sbjct: 199 IYQSNWELSGARAFSVLHALNSHGIDGRRMV-VEAYGRYTLAKDAQGKIDKLGS--RRVV 255 Query: 336 ILV 338 I + Sbjct: 256 IAI 258 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 12/98 (12%) Query: 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI------------E 66 + + N+L W + +ADFMT++ A F++++ ++ ++ K + + Sbjct: 6 RTRLKMHSGNDLHRWTVSFADFMTLMFAVFVLLYAVSINQEEQYKEVIVKIQKASKLLNQ 65 Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104 F+ + ++T + E + P S+ I+ + DE Sbjct: 66 SVFSSEREGILTENSNSIIEDSGPAIRSEGMINQANDE 103 >gi|4580970|gb|AAD24557.1|AF117965_1 OprF [Pseudomonas marginalis pv. marginalis] Length = 321 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 221 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K GV+ R++ + G+ R A++ + NRR++ Sbjct: 278 KQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 318 >gi|308186535|ref|YP_003930666.1| type VI secretion system, core protein [Pantoea vagans C9-1] gi|308057045|gb|ADO09217.1| Putative type VI secretion system, core protein [Pantoea vagans C9-1] Length = 412 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 4/116 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNW 285 S++ + +F +++ I V+++I + + + I + G++D P R+ N+ Sbjct: 281 SVVTLKGDGLFASAATEVRGGYIDVIRRIAAAMNNVSGQIQVIGYSDNVPIRSARFASNF 340 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 LSL RA S +L + R+ G + + + NRR++I + Sbjct: 341 ELSLARARSVQTLLQQQLAQPSRVKA-EGRGESNPLVPNTSAENRARNRRVEITLL 395 >gi|197124193|ref|YP_002136144.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|196174042|gb|ACG75015.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] Length = 543 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286 I+ + FD + ++ +L + +++A + V++I GHTD++ A N Sbjct: 429 IEIKEKVYFDTGKATIKAQSNALLDDVAKLIAANPQVGVVTIEGHTDST---GSAATNRA 485 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L+ GV R+ GF + ++ ANRR++ +++ Sbjct: 486 LSQKRAEAVKDYLVSKGVDASRLEA-KGFGPDQPVESNKTAKGREANRRVEFTIQN 540 >gi|73540381|ref|YP_294901.1| OmpA [Ralstonia eutropha JMP134] gi|72117794|gb|AAZ60057.1| OmpA [Ralstonia eutropha JMP134] Length = 212 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 16/133 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 G I +Q + + FD S+ P VL ++ + L H V ++ GHT Sbjct: 84 GTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHT 143 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A+ N +LS RA S L GV+ +R+S G + + Sbjct: 144 DST---GNAQYNMQLSQRRAQSVATYLGDRGVARNRLSA-EGRGQTQPVADNATEAGRTQ 199 Query: 331 NRRIDILVEDRQG 343 NRR++I ++ QG Sbjct: 200 NRRVEIFLKPIQG 212 >gi|237742260|ref|ZP_04572741.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|256845531|ref|ZP_05550989.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|294785172|ref|ZP_06750460.1| OmpA family protein [Fusobacterium sp. 3_1_27] gi|229429908|gb|EEO40120.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|256719090|gb|EEU32645.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|294486886|gb|EFG34248.1| OmpA family protein [Fusobacterium sp. 3_1_27] Length = 212 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + +++ + L G A ++I++ F S+ L Sbjct: 74 DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANISSGFYSAL 123 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I + L + E I + G+TD + N LS RA + Q L+ GV+ +RI Sbjct: 124 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVASNRIVA 180 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +GF ++ NRR++I + Q Sbjct: 181 -NGFGSSNPVASNSTQEGRLQNRRVEIKILPAQ 212 >gi|220918973|ref|YP_002494277.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956827|gb|ACL67211.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 544 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286 ID + FD ++ +L + +++A + V++I GHTD++ A N Sbjct: 430 IDIKEKVYFDTGKDTIKAKSNALLDDVAKLVAANPQVGVVTIEGHTDST---GSAATNRA 486 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L+ GV R+ GF + ++ ANRR++ +++ Sbjct: 487 LSQKRAEAVKDYLVSKGVDASRLEA-KGFGPDQPVESNKTAKGREANRRVEFTIQN 541 >gi|299066021|emb|CBJ37202.1| putative outer membrane lipoprotein [Ralstonia solanacearum CMR15] Length = 209 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%) Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S L D G G + ++I + FD S++ P L + E L+ Sbjct: 73 SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAETLSQH 129 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E ++ GHTD++ N LS RA S L GV+ R+S G + Sbjct: 130 PELAANVVGHTDST---GNPNYNMSLSQRRAQSVASYLTDRGVARTRLSA-EGRGQTQPV 185 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 A++ + NRR++I ++ QG Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209 >gi|167564292|ref|ZP_02357208.1| ompA family protein [Burkholderia oklahomensis EO147] Length = 243 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 96 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 152 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 153 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRASNIALSQARADAVKGYLVAKGIASQ 209 Query: 308 RISKISGFAHHRLKIASDPM--NSANRRID 335 +++ +G + ++D + NRRI+ Sbjct: 210 QLT-TTGVGPDQPIASNDTNDGRARNRRIE 238 >gi|74318472|ref|YP_316212.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] gi|74057967|gb|AAZ98407.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] Length = 402 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S P++I +L L + + GHTD++ N LS RA + Sbjct: 301 FEPGSVRLTPDSITILDNAAASLNAWGEVRVEVAGHTDSTHSAAF---NLELSQRRAEAV 357 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L+K GV +R++ G+ + + + NRR++++ Sbjct: 358 RAYLVKKGVRAERLTA-RGYGESQPVADNRTAAGRAQNRRVELV 400 >gi|288575422|ref|ZP_06393704.1| OmpA family protein [Neisseria mucosa ATCC 25996] gi|288568103|gb|EFC89663.1| OmpA family protein [Neisseria mucosa ATCC 25996] Length = 190 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 +K E R G I ++ N F S+ L E L + ++I Sbjct: 50 ENLKNTNIEVERQGNQIKLVMPENVT-FATGSAALSDHARNALATASETLVQYPDTTLTI 108 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + N LS +RA + L GV+ R++ +G+ ++ Sbjct: 109 NGHTDNT---GNDAINEPLSRNRALAVADYLQSRGVNGSRLT-TAGYGSRHPIASNATVE 164 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 165 GRAQNRRVEILINPDQ 180 >gi|15598888|ref|NP_252382.1| Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1] gi|107103206|ref|ZP_01367124.1| hypothetical protein PaerPA_01004275 [Pseudomonas aeruginosa PACS2] gi|116051689|ref|YP_789472.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa UCBPP-PA14] gi|218890031|ref|YP_002438895.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254236602|ref|ZP_04929925.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719] gi|254242387|ref|ZP_04935709.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192] gi|296387801|ref|ZP_06877276.1| putative outer membrane protein precursor [Pseudomonas aeruginosa PAb1] gi|313109098|ref|ZP_07795070.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|9949856|gb|AAG07080.1|AE004788_10 Lipotoxon F, LptF [Pseudomonas aeruginosa PAO1] gi|115586910|gb|ABJ12925.1| putative outer membrane protein, OmpA [Pseudomonas aeruginosa UCBPP-PA14] gi|126168533|gb|EAZ54044.1| hypothetical protein PACG_02605 [Pseudomonas aeruginosa C3719] gi|126195765|gb|EAZ59828.1| hypothetical protein PA2G_03131 [Pseudomonas aeruginosa 2192] gi|218770254|emb|CAW26019.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|310881572|gb|EFQ40166.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 261 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 90/237 (37%), Gaps = 13/237 (5%) Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 T + +L+ +N + + ++ + + + G+D L Sbjct: 22 TPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYL 81 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 N+ + A + Q ++ + + L D + + + T G ++ Sbjct: 82 TNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQL--DKLRSQLNAKQTSRGTMV 139 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 + D +FD S P + +Q++ E L + E + + G+TD++ A N Sbjct: 140 TFGD----VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDST---GSANYNQ 192 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RLS RA S L+ G+S +R+ G+ ++ + NRR+++ + + Sbjct: 193 RLSERRADSVRMALLSRGISPERV-ATRGYGKEYPVASNGTSSGRAMNRRVEVTISN 248 >gi|261417296|ref|YP_003250979.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373752|gb|ACX76497.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325429|gb|ADL24630.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 659 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ + L I E++ E + ++GHTD + + N +LS DRA + Sbjct: 556 FKTASARLTKSSYGTLDDIAELMIKIPEANLEVQGHTDN---KGSEKRNKKLSEDRAAAV 612 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 + L+K GV++DR+ + +G+ + + + NRR++++ Sbjct: 613 VKYLVKKGVAKDRL-RAAGYGSEKPIADNTDAAGRAQNRRVELV 655 >gi|315497454|ref|YP_004086258.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48] gi|315415466|gb|ADU12107.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48] Length = 222 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 18/205 (8%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 ++ K + + G L +T+ K +N + + + + ++ Sbjct: 32 DNTKTNAIIGAAVGAGLGYATNTNKGEQGRKNAVI-GAGIGALAGAAVGQYMDKQQAELR 90 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+G TR G I I++ + F S+ VL + +L Sbjct: 91 RELAGT---------NVTVTRNGDNI-ILNMPSDVTFGSGSASIDASFYPVLNDVASILN 140 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I GH D++ N LS DRA S L GV R+ ++G + Sbjct: 141 KYPSTYVDIVGHADST---GSDAINEPLSEDRANSTAAYLTSRGVVNQRLF-VAGMGSRQ 196 Query: 320 LKIASDP--MNSANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 197 PIASNATPEGRAKNRRVEITLRPVQ 221 >gi|313203319|ref|YP_004041976.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312442635|gb|ADQ78991.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 817 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ P++ +L +I V+ + +I +RGHTD A+ N LS RA S Sbjct: 709 FETGKDKIKPKSYPILNQIAAVMTANPTYLIEVRGHTDNV---GDAKLNQVLSQKRAESV 765 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 + L+ G+ R++ +G+ + NRR++ Sbjct: 766 RKYLIGKGIDSKRMTA-NGYGDTLPVSTNSTPAGRTLNRRVE 806 >gi|119474693|ref|ZP_01615046.1| hypothetical protein GP2143_12776 [marine gamma proteobacterium HTCC2143] gi|119450896|gb|EAW32129.1| hypothetical protein GP2143_12776 [marine gamma proteobacterium HTCC2143] Length = 209 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 20/168 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS+ L +++++ + + L+ +A T T I I + + Sbjct: 42 ELSQTLELEIQKRQAEEQRRMALEQALAAPLATG-------RVTLTNGRIGIS---GSVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S E +LQ + L E++ + G TD P + DNW LS Sbjct: 92 FATNSDQLQVEGRELLQTLVAPLQVYLGERDEMLMVSGFTDDKPIQRGNNRFADNWELSS 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 +RA + + L++ G+ + + F + + + + NRR++ Sbjct: 152 ERALTVTRALIEEGMPSSMVFAAA-FGAQQPVVPNTDGDSRARNRRVE 198 >gi|228471770|ref|ZP_04056543.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624] gi|228276923|gb|EEK15618.1| OmpA family protein [Capnocytophaga gingivalis ATCC 33624] Length = 455 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 80/269 (29%), Gaps = 25/269 (9%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P K+ G+ + P+ D K + ++ Sbjct: 205 PDNKDACPEVPGLKEFNGCPDTDGDGIPDKDDACPQVKGPKEFNGCPDTDGDGIPDKDDA 264 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 ++ ++ C ++ D C EN P + + + Sbjct: 265 CPEVAGPKEFNGCPDTDGDGIPDKDDKCPDV-----AGPAENGGCPWPDTDGDGVLDKDD 319 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++A S+ + K + T +FD + ++ Sbjct: 320 LCPEVAGPASNKGCPEPDEKEQK-------------QLNQYAKTILFDTGKATIKFQSAE 366 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL +I VL I GHTD++ N LS +RA + L++ G+ R+ Sbjct: 367 VLNQIINVLKKYPNSRFRIEGHTDST---GKKAKNMILSQNRADAVKVYLIQGGIDAGRL 423 Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDI 336 GF + + NRR++I Sbjct: 424 ES-QGFGPEKPIASNKNKKGRELNRRVEI 451 >gi|26988234|ref|NP_743659.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|24982975|gb|AAN67123.1|AE016341_6 OmpA family protein [Pseudomonas putida KT2440] Length = 263 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 18/235 (7%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + Q+ T+D++ + +++ K+ Sbjct: 21 SHDPNANLESARTNFSSLQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRTAEAELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + K+ + L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSNAYPNITKLAQFLQENPERKVIVEGYTDSV---GSANYNQT 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L+++GV RI S+ G + +S+ + NRR+++ + + Sbjct: 194 LSERRANSVRMALVRAGVDPARIVSQGYGKEYPVADNSSNSGRAQNRRVEVTISN 248 >gi|289672566|ref|ZP_06493456.1| flagellar motor protein MotB [Pseudomonas syringae pv. syringae FF5] Length = 48 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT 57 EN+Q IIIK+ V ++ G+WKI +ADF T +MAFFLV+W+I+++ Sbjct: 2 ENNQPIIIKR-VKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLISSS 48 >gi|317049660|ref|YP_004117308.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b] gi|316951277|gb|ADU70752.1| OmpA/MotB domain protein [Pantoea sp. At-9b] Length = 528 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +I + +FD + P T ++++ + + A +I I GHTD + N Sbjct: 389 TIAQLDSLALFDSGKAELKPGSTKMLIKALVGIRAKPGWLIVISGHTDNT---GDPAFNQ 445 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +LSL RA + + +G + + G+ R + +D + NRR+DI + + Sbjct: 446 QLSLQRAEAVRNWMRDTGAIAESCFAVQGYGVSRPLVTNDTPEGRATNRRVDIRLVPQ 503 >gi|254292855|ref|YP_003058878.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] gi|254041386|gb|ACT58181.1| OmpA/MotB domain protein [Hirschia baltica ATCC 49814] Length = 222 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 21/218 (9%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + + + + + L ++ E++ Sbjct: 20 QTTDPYSRETKTSNTAKGAAIGALGGAVLGALTNTSSGEQAAKNAMIGAGIGAIAGGASG 79 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 ++ + L +++ T G TR G I ++ F + Sbjct: 80 RYMDQQEKKLRERLDETGVG-------------VTRVGDTIQLV-MPGDITFATGRAEIN 125 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 + VLQ +G VL + V+ I GHTD + N LS RA + LM+ G+ Sbjct: 126 NQFDYVLQDVGLVLQEFDKTVVFIDGHTDTV---GSYQKNDELSQARANNVAARLMQEGI 182 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R+ ++G+ RLK+ + NRR++I +E Sbjct: 183 LGGRLV-VTGYGESRLKVPTGDGVNEPLNRRVEIRLEP 219 >gi|295133926|ref|YP_003584602.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294981941|gb|ADF52406.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 281 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 QK + ++ E Y + + + + + D+ NK ++ ++ Sbjct: 42 QKTRVEKEEIEEKYAAIEARVADYNAKINSLRSSNDEKLEMNDVTAMSNKTKDRMRKTIA 101 Query: 180 KEKILAMKRKKRLQD-LAKKISSTLSGLVADNI-VKGVLFETTRTGILISIIDQRNTPMF 237 K ++ + L+D + IS L + + V +T ++I++ D +F Sbjct: 102 KMDASELEGVETLEDSINAAISYNLKNEITEGKDGDDVDITVDKTVVMINVSD---KLLF 158 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA--RDNWRLSLDRAYS 294 S + +L+K+ EV+ + + GHTD + DNW LS+ RA + Sbjct: 159 RSGSYRLSNDAQPLLKKLAEVINSEPSMEVMVEGHTDNRTMVEDSWLEDNWDLSVRRATA 218 Query: 295 AYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 + L V ++ +G + + + + + + NRR I+V Sbjct: 219 VVRQLQDKYDVDGAKLIA-AGRSSYSPLVENTSKDNMAKNRRTRIVVIP 266 >gi|238895326|ref|YP_002920061.1| hypothetical protein KP1_3385 [Klebsiella pneumoniae NTUH-K2044] gi|238547643|dbj|BAH63994.1| hypothetical protein KP1_3385 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 565 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 9/147 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGE 257 + + ++ + V+ + + I + + +FD S P + +L + Sbjct: 401 VEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSALKPGSTKLLVNSLLG 457 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + A +I + GHTD+ R N +LSL RA + + +G + + G+ Sbjct: 458 IKAKPGWLIVVAGHTDSI---GNDRSNQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGA 514 Query: 318 HRLKIASDP--MNSANRRIDILVEDRQ 342 R +++ + NRR++I + ++ Sbjct: 515 SRPVASNETPEGRAQNRRVEISLVPQK 541 >gi|206577657|ref|YP_002237882.1| OmpA domain protein [Klebsiella pneumoniae 342] gi|206566715|gb|ACI08491.1| OmpA domain protein [Klebsiella pneumoniae 342] Length = 565 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 9/153 (5%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + + ++ + V+ + + I + + +FD S P + +L Sbjct: 395 MRLIPFVEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSTLKPGSTKLL 451 Query: 253 -QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + A +I + GHTD+ + N +LSL RA + + +G + Sbjct: 452 VNSLLGIKAKPGWLIVVAGHTDSI---GNDKSNQQLSLKRAEAVRDWMRDTGDVPESCFA 508 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ R +++ + NRR++I + ++ Sbjct: 509 VQGYGASRPVASNETPEGRAKNRRVEISLVPQK 541 >gi|194290514|ref|YP_002006421.1| outer membrane lipoprotein [Cupriavidus taiwanensis LMG 19424] gi|193224349|emb|CAQ70360.1| putative outer membrane lipoprotein [Cupriavidus taiwanensis LMG 19424] Length = 212 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 16/133 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 G I +Q + + FD S+ P VL ++ + L+ H ++ GHT Sbjct: 84 GTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLSQHQDVSANVVGHT 143 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330 D++ N +LS RA S L GV+ +R+S G + + + + Sbjct: 144 DST---GNPNYNMQLSQRRAQSVAGYLGDRGVARNRLSA-EGRGQSQPVADNGTEAGRAQ 199 Query: 331 NRRIDILVEDRQG 343 NRR++I ++ QG Sbjct: 200 NRRVEIFLKPIQG 212 >gi|194364578|ref|YP_002027188.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347382|gb|ACF50505.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 362 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 253 FDFDKSNLRPDAVAILSEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 309 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 310 YNYLTKNGVDAGRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 362 >gi|49083000|gb|AAT50900.1| PA3692 [synthetic construct] Length = 262 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 13/237 (5%) Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 T + +L+ +N + ++ + + + G+D L Sbjct: 22 TPPNANLEQARSNFSALQSQPGATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYL 81 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 N+ + A + Q ++ + + L D + + + T G ++ Sbjct: 82 TNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQL--DKLRSQLNAKQTSRGTMV 139 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 + D +FD S P + +Q++ E L + E + + G+TD++ A N Sbjct: 140 TFGD----VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDST---GSANYNQ 192 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RLS RA S L+ G+S +R+ G+ ++ + NRR+++ + + Sbjct: 193 RLSERRADSVRMALLSRGISPERV-ATRGYGKEYPVASNGTSSGRAMNRRVEVTISN 248 >gi|261253627|ref|ZP_05946200.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] gi|260937018|gb|EEX93007.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] Length = 320 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ PE+ +L ++ + + + + I G+TD+ A N LS RA + Sbjct: 212 FALNSTELKPESKSLLSELVQFMEQYPQANVEITGYTDS---SGAAEYNQMLSEKRAQAV 268 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L GV RI+ +SG + ++D + NRR++I V Sbjct: 269 ANELESQGVESSRIT-VSGEGENNPIASNDTRGGRAQNRRVEITV 312 >gi|254785154|ref|YP_003072582.1| OmpA family protein [Teredinibacter turnerae T7901] gi|237683675|gb|ACR10939.1| OmpA family protein [Teredinibacter turnerae T7901] Length = 216 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++G + R G I++I F S PE VL + +VL + VI + Sbjct: 86 QQLQGSGVQVQRDGNTINLI-MPGNITFATDSFDIKPEFHSVLDSVAQVLKEFKKTVIVV 144 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD++ A N +LS +RA S L+ V+ R+ + G+ ++ Sbjct: 145 SGHTDST---GSATYNQQLSENRANSVRSYLLNRSVASGRVQAV-GYGPRMPIASNKTAQ 200 Query: 327 MNSANRRIDILVEDRQ 342 NRR+++ +E + Sbjct: 201 GRQQNRRVELKLEPTE 216 >gi|239816213|ref|YP_002945123.1| hypothetical protein Vapar_3239 [Variovorax paradoxus S110] gi|239802790|gb|ACS19857.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 218 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 21/178 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L+ + +++++ + + L+G +A T I I + + Sbjct: 43 DLAAKLQAEVQQRQAETQRREALEQALAGPLAAG-------RVTLNNGRIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFR------NIARDNWR 286 F +S+ PE VL+ + L EV+ + G TD R DNW Sbjct: 93 FAFNSAELQPEGRQVLKSLAAPVASYLRARDEVLMVSGFTDDRQMRQSKDGNRPFADNWE 152 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVEDRQG 343 LS RA + + L++ GV + + + + +D + NRR+++ RQ Sbjct: 153 LSAQRALTVTRALIEEGVPSSSVFAAAFGSEQAVASNADAEGRAKNRRVEMAPTPRQA 210 >gi|19704600|ref|NP_604162.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714896|gb|AAL95461.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 202 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + +++ + L G A ++I++ F S+ L Sbjct: 64 DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANITSGFYSAL 113 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I + L + E I + G+TD + N LS RA + Q L+ GVS +RI Sbjct: 114 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVSSNRIVA 170 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +GF ++ NRR++I + Q Sbjct: 171 -NGFGSSNPIASNSTPEGRLQNRRVEIKILPAQ 202 >gi|83643650|ref|YP_432085.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83631693|gb|ABC27660.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 464 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 11/129 (8%) Query: 218 ETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + G I + + + F +S+ E + ++K+ E + + + GHTD Sbjct: 333 KVDNRGCRIQLSETVTITLNVTFPTNSAAITDEFVSEVEKLAEFMRQYPDTKAVVEGHTD 392 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330 R N +LS RA + Q++++ G++ +RIS + G+ R ++ SA Sbjct: 393 D---RGQDAYNQKLSEKRASAVRQMVVERFGIAGERISSV-GYGETRPIGDNNTADGRSA 448 Query: 331 NRRIDILVE 339 NRR+ +VE Sbjct: 449 NRRVVGVVE 457 >gi|186471185|ref|YP_001862503.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184197494|gb|ACC75457.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 215 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 20/174 (11%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS A+K+++ K + L+G +A T I I + Sbjct: 43 ELSARLDDAVKQRQMEAQRRKTLEQALAGPLAAG-------RVTLVNGRIGIS---GNVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S P+ +L+ + L+ E++ + G D R R DNW LS Sbjct: 93 FALNSDQLQPQGRDLLKSLAAPLSAYLRSHDEILMVSGFADDQQVRAGNRRFADNWELSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 RA + + + SG+ + + F + A + NRR++I R Sbjct: 153 QRALTVTRAFIDSGIPASSVFAAA-FGSEQPVSSNADSEGRAKNRRVEIAAVPR 205 >gi|88798562|ref|ZP_01114146.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Reinekea sp. MED297] gi|88778662|gb|EAR09853.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Reinekea sp. MED297] Length = 224 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 16/151 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + K++ L G GV + T G I +I FD +SS I Sbjct: 82 MDQQEKELRDELVGT-------GVQVKRTEEG-QIDLI-MPGNITFDVNSSTVADGFIPT 132 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ + +VL ++I GHTD+ N LS RA S ++++ G+ +R++ Sbjct: 133 LRSVAKVLKEYENTLVTISGHTDS---SGSEDYNQLLSEQRATSVANIILQEGIVVERVA 189 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVE 339 +G+ + ++D + NRR++I ++ Sbjct: 190 A-AGYGELQPIASNDTPEGRAENRRVEITLD 219 >gi|310814625|ref|YP_003962589.1| OmpA family protein [Ketogulonicigenium vulgare Y25] gi|308753360|gb|ADO41289.1| OmpA family protein [Ketogulonicigenium vulgare Y25] Length = 227 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 10/209 (4%) Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 Q+ + + + S ++ N + + A+ + + Sbjct: 24 PIQGQTNDNTRQGAMVGAGLGAVVGALTGDDSNDRWRNAAIGAAVGGGLGAVGGQALDRQ 83 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 A+ + + + V + +++ +F +S+ ++ L+ Sbjct: 84 EAELARARQEAELRQQLGGNVGIVNNGQNLTVTM---PQDVLFGTNSTAVSIQSQTDLRT 140 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L IS+ GHTD++ A N LS+ RA + VL+ GV+ R+ + Sbjct: 141 VAASLNRYPNTSISVIGHTDST---GSASYNQDLSVRRAQAVASVLINGGVAPARVYTV- 196 Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVED 340 G + ++ + NRR++I++ Sbjct: 197 GRGASQPIASNATPDGRQLNRRVEIIITP 225 >gi|146283087|ref|YP_001173240.1| OmpA family protein [Pseudomonas stutzeri A1501] gi|145571292|gb|ABP80398.1| OmpA family protein [Pseudomonas stutzeri A1501] gi|327481439|gb|AEA84749.1| OmpA family protein [Pseudomonas stutzeri DSM 4166] Length = 260 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 16/239 (6%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 +N D + + + + + ++ N + K + + L Sbjct: 23 QPNQNLEDARSSYSALQADSRASKLAALETQDAGNMLDKANKAYLNDADEKTVDQLAYLT 82 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 K + + S E+ L +R + + + + L D K T G Sbjct: 83 KRRIELAEQTIALRSAEEELGKTSAQRAEARLEAREAQIRKLQEDMQAKQ-----TERGT 137 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 L++ D +FD + P + +QK+ + L + E + + G+TD++ A Sbjct: 138 LVTFGD----VLFDYDRAELKPGGMRSVQKLADFLNDNPERKVIVEGYTDST---GSAEY 190 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 N RLS RA + L+K GV RI G+ + + NRR+++ + D Sbjct: 191 NQRLSERRADAVRMALVKMGVDPQRIVS-QGYGKEYPVASNSDSAGRAMNRRVEVTISD 248 >gi|312962474|ref|ZP_07776965.1| Outer membrane porin F [Pseudomonas fluorescens WH6] gi|311283401|gb|EFQ61991.1| Outer membrane porin F [Pseudomonas fluorescens WH6] Length = 326 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 221 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 QVL+K GV+ R++ + G+ R A++ + NRR++ VE Sbjct: 278 KQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|315225528|ref|ZP_07867338.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287] gi|314944472|gb|EFS96511.1| OmpA-OmpF porin family protein [Capnocytophaga ochracea F0287] Length = 456 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 E T + + D T +FD + + P++ VL +I +VL SI G+TD Sbjct: 336 EVTEE-VQKKLNDFARTILFDVNKATIKPQSATVLNQIVDVLNQYKNAKFSIEGYTD--- 391 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 N +LS DRAYS L++ G+ E R++ GF + ++ NRR+ Sbjct: 392 ISGKRDKNQKLSEDRAYSVKAYLIEKGIDEGRLTA-KGFGPDKPIASNKTKKGRELNRRV 450 Query: 335 DI 336 +I Sbjct: 451 EI 452 >gi|237744199|ref|ZP_04574680.1| outer membrane protein [Fusobacterium sp. 7_1] gi|256027684|ref|ZP_05441518.1| Outer membrane protein [Fusobacterium sp. D11] gi|260494220|ref|ZP_05814351.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33] gi|289765644|ref|ZP_06525022.1| outer membrane protein [Fusobacterium sp. D11] gi|229431428|gb|EEO41640.1| outer membrane protein [Fusobacterium sp. 7_1] gi|260198366|gb|EEW95882.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33] gi|289717199|gb|EFD81211.1| outer membrane protein [Fusobacterium sp. D11] Length = 212 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + +++ + L G A +G ++I++ F S+ L Sbjct: 74 DNQERELKAKLQGTQAQVKKEG-------NALVINL---PGGVTFASDSANISSGFYSAL 123 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I + L + E I + G+TD + N LS RA + Q L+ GVS RI Sbjct: 124 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVSSSRIIA 180 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +GF ++ + NRR++I + Q Sbjct: 181 -NGFGSSNPIASNSTPDGRLQNRRVEIKILPAQ 212 >gi|167721446|ref|ZP_02404682.1| ompA family protein [Burkholderia pseudomallei DM98] Length = 243 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 96 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 152 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 153 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 209 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 210 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 238 >gi|300870134|ref|YP_003785005.1| OmpA family outer membrane protein [Brachyspira pilosicoli 95/1000] gi|300687833|gb|ADK30504.1| outer membrane protein, OmpA family [Brachyspira pilosicoli 95/1000] Length = 401 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 13/151 (8%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + ++ + + DN+ V+ +T G++I + +FD S + + Sbjct: 260 ITEEENELNRKKIEDNLNDDVVVDTVPEGLVIRL----GEILFDTDSYTLKEDAKDTVDN 315 Query: 255 IGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 I + + I + GHTD + A N LS RA + ++ + D++ Sbjct: 316 IINAIKQTYPDREIIVEGHTDNT---GEANYNQALSEKRAKTVADYILPK-LEHDKL-SY 370 Query: 313 SGFAHHRLKIASD--PMNSANRRIDILVEDR 341 GF ++D NRR+DI+++ R Sbjct: 371 RGFGDKEPIASNDNPDGRQKNRRVDIIIKLR 401 >gi|71065432|ref|YP_264159.1| OmpA/MotB [Psychrobacter arcticus 273-4] gi|71038417|gb|AAZ18725.1| probable OmpA/MotB [Psychrobacter arcticus 273-4] Length = 211 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 29/170 (17%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++++ L + I ++++ A N+ + I++ D +F + S+ Sbjct: 48 QQSDRQKIATLLEDIQTSVATQGAGNL-----IDFNMEQSKITLKDN----VFARGSACI 98 Query: 245 LPETIVVL----QKIGEVLAHSTE-VISIRGHTDASPFR----------NIARDNWRLSL 289 PE KI L S+ I + GHTD P + DN+ LS Sbjct: 99 TPEAKTAFNNIEDKITSFLQQSSNAKIFVEGHTDNIPVSQPVTDYRRFCTVYDDNYTLSA 158 Query: 290 DRAYSAYQVLMKSGVSEDRISK---ISGFAHHRLKIASDPMNSANRRIDI 336 RA A ++L+ G + I+K ++G+ + P + ANRR+++ Sbjct: 159 ARAREARKLLV--GQLDTSIAKRIVVAGYGDSQPIKGISPEDDANRRVEV 206 >gi|152970821|ref|YP_001335930.1| hypothetical protein KPN_02274 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955670|gb|ABR77700.1| putative exported protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 565 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 9/147 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGE 257 + + ++ + V+ + + I + + +FD S P + +L + Sbjct: 401 VEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSTLKPGSTKLLVNSLLG 457 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + A +I + GHTD+ R N +LSL RA + + +G + + G+ Sbjct: 458 IKAKPGWLIVVAGHTDSI---GNDRSNQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGA 514 Query: 318 HRLKIASDP--MNSANRRIDILVEDRQ 342 R +++ + NRR++I + ++ Sbjct: 515 SRPVASNETPEGRAQNRRVEISLVPQK 541 >gi|329915272|ref|ZP_08276241.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium IMCC9480] gi|327544948|gb|EGF30290.1| Flagellar motor rotation protein MotB [Oxalobacteraceae bacterium IMCC9480] Length = 212 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 16/165 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 LS + +++ + + L+ +A T I I + Sbjct: 42 ELSSSLQDEIAKRQAEEQRRMTLEKALAIPLATG-------RITLNNGRIGIS---GQVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIAR-DNWRLSLDR 291 F +S PE +L + + L E++ + G TD R DNW LS R Sbjct: 92 FGLNSDQLQPEGRQLLTTLVKPLQAYLTTRDELLMVSGFTDDISIRGGRFADNWELSAQR 151 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRID 335 A + + L+ G+ + + A + D + NRR++ Sbjct: 152 ALTVTRALIDEGMPSAMVFAAAFGAEQPVSPNTDDAARAQNRRVE 196 >gi|330820825|ref|YP_004349687.1| OmpA/MotB [Burkholderia gladioli BSR3] gi|327372820|gb|AEA64175.1| OmpA/MotB [Burkholderia gladioli BSR3] Length = 228 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 24/178 (13%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232 + E + + R + + + TL +A + G ++++D R Sbjct: 39 GMQLEASSRLADEVRQRQVETQRRKTLEQALAGPLAAG----------RVTLVDGRIGIA 88 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNIAR---DNW 285 +F +S PE +L+ + L +++ + G D R R DNW Sbjct: 89 GNVLFAVNSDQLQPEGRDLLRSLAGPLTAYLHDRDQILMVSGFADDQLVRAGNRRFADNW 148 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 LS +RA + + + SGV + + F + A + + NRR++I R Sbjct: 149 ELSAERALTVTRAFIDSGVPAASVFAAA-FGSEQPVSSNADEAGRARNRRVEIAAVPR 205 >gi|284035678|ref|YP_003385608.1| V-type H(+)-translocating pyrophosphatase [Spirosoma linguale DSM 74] gi|283814971|gb|ADB36809.1| V-type H(+)-translocating pyrophosphatase [Spirosoma linguale DSM 74] Length = 890 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 19/204 (9%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + R+ + DLEKS E + K K L + K Sbjct: 703 STTASEGNREGITAQGGMHGVDLEKSTAAENVTVTENVLKFKNDKTGVDLNLSGVGKIEE 762 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + + +D V + + F+ + PE+ V L + ++L Sbjct: 763 QLIEFINSDKAVDKETWF------------DFDRLTFETGKATLKPESQVQLGNVAQILK 810 Query: 261 HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 V + + G+TD + A N +LS +RA S L K G+ + R+ G+ Sbjct: 811 AYPNVNVKVGGYTDNT---GNANANLKLSGERASSVEAELEKLGIDKSRLEA-EGYGQEH 866 Query: 320 LKIASDPM--NSANRRIDILVEDR 341 ++D + NRRI + V + Sbjct: 867 PVASNDTEEGRAQNRRISMRVTKK 890 >gi|641920|gb|AAA85840.1| protein F precursor [Pseudomonas fluorescens] Length = 317 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K GV+ RI+ + G+ R A++ + NRR++ Sbjct: 275 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|190572988|ref|YP_001970833.1| putative outer membrane protein [Stenotrophomonas maltophilia K279a] gi|190010910|emb|CAQ44519.1| putative outer membrane protein [Stenotrophomonas maltophilia K279a] Length = 366 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 257 FDFDKSNLRPDAVAILSEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 313 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 314 YNYLTKNGVDAGRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 366 >gi|167826034|ref|ZP_02457505.1| ompA family protein [Burkholderia pseudomallei 9] Length = 247 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 100 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 156 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 157 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 213 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 214 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 242 >gi|119899491|ref|YP_934704.1| lipoprotein attached to the membrane by a lipid anchor [Azoarcus sp. BH72] gi|119671904|emb|CAL95818.1| lipoprotein attached to the membrane by a lipid anchor [Azoarcus sp. BH72] Length = 193 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 15/175 (8%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 N+ P + EK A K L K++S L G+ + E T GI + Sbjct: 28 ANRPSEGGSTPPAAEKRAASTAKIDWAALQKELSGALRGVQDAEVG-----EATADGIHL 82 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 I F S P P VL + LA V I + GHTD N Sbjct: 83 RIPVSNG---FASGGSEPRPALTKVLDSLVAPLAARPGVGIKVIGHTDGL---GSEMYNL 136 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 +LS+ RA + + L G++ DR+S G + + + NRR++I++ Sbjct: 137 KLSIQRAEAVMEYLRSRGIAFDRLSA-DGKGETEPIADNAKEATRARNRRVEIVL 190 >gi|94309565|ref|YP_582775.1| OmpA/MotB [Cupriavidus metallidurans CH34] gi|93353417|gb|ABF07506.1| putative OmpA/MotB (family of outer membrane porins precursor) [Cupriavidus metallidurans CH34] Length = 572 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 I+ + +F S++ + VL E++ + + + GHTD+ +R N +L Sbjct: 440 IELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLVAGHTDSV---GDSRANLKL 496 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 S RA S L + I G+ R K ++P +ANRR++I + Sbjct: 497 SEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRAANRRVEITLVP 551 >gi|332886090|gb|EGK06334.1| hypothetical protein HMPREF9456_00208 [Dysgonomonas mossii DSM 22836] Length = 295 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 92/243 (37%), Gaps = 20/243 (8%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 + + ++ S ++ R N + ++ SL ++++ ++ K D Sbjct: 48 ESQLQLAESRTRVASLEERLAEARKNNEDLRAAYAEMQGLLNKSLLQNTQGNVNITKLVD 107 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 S N+ + + + K R L + + L+ + + ++ + + + Sbjct: 108 EINSSNRFIQHLV-----------QAKNRSDSLNIVMINNLTRSLTRDEMQDLDIKVLKG 156 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281 + IS+ D ++ + +L KI +++ + + G+TD P Sbjct: 157 VVYISLDD---RMLYRSGGYEISTKAGEILSKIAKIIMDYKDYSVLVEGNTDTDPISRPN 213 Query: 282 -RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 R+NW LS RA S Q L + GV R++ +G + + + NRR I+ Sbjct: 214 IRNNWDLSALRASSVVQALQNNYGVDPKRLTA-AGRGEYNPIATNSTAEGKALNRRTQII 272 Query: 338 VED 340 + Sbjct: 273 ITP 275 >gi|115372711|ref|ZP_01460017.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|310823482|ref|YP_003955840.1| thrombospondin type 3 repeat protein, outer membrane domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115370192|gb|EAU69121.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|309396554|gb|ADO74013.1| Thrombospondin type 3 repeat protein, outer membrane domain protein [Stigmatella aurantiaca DW4/3-1] Length = 5149 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 27/282 (9%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 P K ++ P +D DE + + G + + Sbjct: 4869 KPEEKPVVEPVAVPQQAPAPVCPQGPEDMDGFQDEDGCADPDNDGDGILDASDKCPNAPE 4928 Query: 130 NIFYL------SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + ++ D C + +K ++E+ P + + Sbjct: 4929 TKNGFQDEDGCPDEAPPPPPVDTDGDGLTDDVDRCPNEPEDKDGFRDEDGCPDPDNDQDG 4988 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNI---VKGVLFETTRTGILISIIDQRNTPMFDKS 240 +A K T++G+ ++ V R I+I + F Sbjct: 4989 IADASDKCPNQ-----PETINGVTDEDGCPDKGKVKVLVEREKIVIL-----DKIFFTSK 5038 Query: 241 SSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + LP++ +L+++ +VL E + + G+TD +N RLS RA + + Sbjct: 5039 MDVILPKSFSLLKQVAQVLKAHPEIEKVRVEGYTDDQ---GPDEENLRLSERRAKAVLER 5095 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L++ GV+ +R+ + GF R ++ ANRR++ V Sbjct: 5096 LVQEGVAAERLDSV-GFGEARPVASNKTSKGRDANRRVEFSV 5136 >gi|325278144|ref|ZP_08143653.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51] gi|324096719|gb|EGB95056.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51] Length = 263 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + Q+ T+D++ + +++ K+ Sbjct: 21 SHDPNANLEAARTNFSALQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRTAEGELKNAAAQRAQAKLDARDAQIAKLQNSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + K+ + L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSNAYPNITKLAQFLQENPERKVIVEGYTDSV---GSASYNQS 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS RA S L+++GV RI G+ +S+ + NRR+++ + + Sbjct: 194 LSERRANSVRMALVRAGVDPARIVA-QGYGKEYPVADNSSNSGRAQNRRVEVTISN 248 >gi|307825940|ref|ZP_07656155.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307733059|gb|EFO03921.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 288 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 8/144 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 ++G E RT + + F S+ P+ L + +VL Sbjct: 79 QQEEMQQSLQGTGIEVQRTAENTLNLTMPSNVTFAFDSATLTPQAQGALDSVAKVLNQYP 138 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I++ GHTD N LS RA S L + GV+ R+++ G K+ Sbjct: 139 DSTINVTGHTDDV---GSDSYNQVLSERRAASVSSYLAQHGVTPSRLTQ-QGMGEKMPKV 194 Query: 323 A--SDPMNSANRRIDI-LVEDRQG 343 ++ NRR+++ +V ++ Sbjct: 195 PNVNEANRGQNRRVELAIVANKNA 218 >gi|148549426|ref|YP_001269528.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148513484|gb|ABQ80344.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 263 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 18/235 (7%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + Q+ T+D++ + +++ K+ Sbjct: 21 SHDPNANLESARTNFSSLQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRTAEAELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + K+ + L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSSAYPNITKLAQFLQENPERKVIVEGYTDSV---GSANYNQT 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L+++GV RI S+ G + +S+ + NRR+++ + + Sbjct: 194 LSERRANSVRMALVRAGVDPARIVSQGYGKEYPVADNSSNSGRAQNRRVEVTISN 248 >gi|108757918|ref|YP_632429.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108461798|gb|ABF86983.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 620 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 16/243 (6%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 D+ E T NS + G + +Q + D + D Sbjct: 372 DVCPTEPETFNSFQDEDGCPDDPNAHQPPTEAGQPAPAPAPLALPPAPVDTDKDGVVDSE 431 Query: 159 K--STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 T+ E E+ P ++ + + A+ I+ D Sbjct: 432 DLCQTEPEDLDGFEDEDGCPDPDNDQDGIPDAEDQCPLEAETINGVQD---DDGCPDKGK 488 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDA 274 + G I I+D F + L + +L+++ L + + + + GHTD Sbjct: 489 AQVRVEGARIVILD---KVYFGTGQDVILARSHGLLRQVAATLKANPRILMVRVEGHTDD 545 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 N LS RA + L+K G++ R+ + G+ + ++ NR Sbjct: 546 Q---GNDMKNLDLSQRRARNVVAFLVKEGIAAQRLDAV-GYGEAKPVDTNETAKGRENNR 601 Query: 333 RID 335 R++ Sbjct: 602 RVE 604 >gi|108759418|ref|YP_635012.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108463298|gb|ABF88483.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 543 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFR 278 R G I I++Q N F I L E+ +L+++ V+ +T + + + GHTD+ R Sbjct: 386 RDGNRIVILEQLN---FATDQDIILSESFPILEEVARVMNENTEADRVHVEGHTDS---R 439 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 N LS RA S + L++SGV+ +R+ GF R A++ + NRR+D Sbjct: 440 ASDAYNLDLSRRRAASVMRFLVESGVAAERLCS-QGFGRSRPLADNATEEGMALNRRVDF 498 Query: 337 LVED 340 ++ Sbjct: 499 TIQP 502 >gi|296533201|ref|ZP_06895824.1| type VI secretion system OmpA/MotB family protein [Roseomonas cervicalis ATCC 49957] gi|296266471|gb|EFH12473.1| type VI secretion system OmpA/MotB family protein [Roseomonas cervicalis ATCC 49957] Length = 162 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 12/153 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 LA ++ L+ +A +V V + RT + I + M+ S+ + +L + Sbjct: 15 LAARLREFLAPEIAQGLV-TVTGDVQRTMVRIQ-----GSGMYASGSATLNERFVPLLTR 68 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311 IGE + I GH+D P R + N+ LS RA +A +V+ ++ G+ R + Sbjct: 69 IGEAVREEDAGRTDILGHSDNQPIRTLRFPSNFHLSQARAEAALEVIRRASGLEAARF-Q 127 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G + ANRRI+++V +R+ Sbjct: 128 AEGRGDAEPVADNRTAEGREANRRIEVVVLNRR 160 >gi|153006608|ref|YP_001380933.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030181|gb|ABS27949.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 440 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 84/251 (33%), Gaps = 10/251 (3%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P +R D D + V K + + + +S Sbjct: 189 PEDRDGFQDEDGCPDADNDGDGVVDKADACPLEPGAVEARGCPVKDRDGDGVSDPADSCP 248 Query: 149 RDSE-KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + K C +D + + E+ +KE LA +I + Sbjct: 249 DVAGIKALAGCPDSDSDGIPDAEDKCPQQAGTKENGGCPDADTDGDALADRIDKCPTQF- 307 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 G + T + ID + F + LP++ +L ++ +VL I Sbjct: 308 -GPRPDGCPKKYTLVQVRREKIDIKQQVHFATAKFRVLPDSFPLLNQVVQVLRDFPNMQI 366 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 SI GHTD+ N RLS RA + L+ GVS +R+ I GF + ++ Sbjct: 367 SIEGHTDSV---GGEALNMRLSQQRAEAVLDYLISKGVSPERLEAI-GFGPTKPIASNKT 422 Query: 327 --MNSANRRID 335 + NRR + Sbjct: 423 ASGRARNRRTE 433 >gi|146276251|ref|YP_001166410.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554492|gb|ABP69105.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 228 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 18/216 (8%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + G L S NK E + + IL Sbjct: 26 SGGNPGMGAPGSYTRENPRASAGIATGAILGGLVGASASDNKLEKAVV-GAAVGGILGGA 84 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 L A + +++ V T + +++++ +F S+ P+ Sbjct: 85 VGSALDRQAADLRNSIGN-------SQVSVTNTGSELVVTM---PQDILFATDSANLRPD 134 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L + + L I + GHTD++ A N LS+ RA S VL+ +GV Sbjct: 135 LQRDLAAVAQNLLRYPNSTIMVVGHTDST---GSAAYNQDLSMRRAQSVAGVLIGNGVPS 191 Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 R++ + G + ++ + NRR+DI++ Sbjct: 192 YRVASL-GRGEDQPIASNLTPEGRAQNRRVDIIIRP 226 >gi|167912756|ref|ZP_02499847.1| ompA family protein [Burkholderia pseudomallei 112] Length = 248 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + Q LA +++ L+ I G+ + G+L + R F+ S+ P+ Sbjct: 101 EAQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATLTPQG 157 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ LA + + I GHTD N LS RA + L+ G++ Sbjct: 158 RAILDQMAGALAKMSSRTVEIIGHTDN---SGNRTSNIALSQARADAVKGYLVTKGIASQ 214 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRID 335 +++ +G + +D + NRRI+ Sbjct: 215 QLT-TTGVGPDQPIAPNDSADGRARNRRIE 243 >gi|152983975|ref|YP_001346830.1| outer membrane protein [Pseudomonas aeruginosa PA7] gi|150959133|gb|ABR81158.1| probable outer membrane protein [Pseudomonas aeruginosa PA7] Length = 261 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 90/237 (37%), Gaps = 13/237 (5%) Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 T + +L+ +N + + ++ + + + G+D L Sbjct: 22 TPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQRDVDQLAYL 81 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 N+ + + + Q ++ + + L D + + + T G ++ Sbjct: 82 TNQRIELAKQTIVLRNAESQLQNASAQRAQARLDARTAQL--DKLRSQLNAKQTSRGTMV 139 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 + D +FD S P + +Q++ E L + E + + G+TD++ A N Sbjct: 140 TFGD----VLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDST---GSANYNQ 192 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RLS RA S L+ G+S +R+ G+ ++ + NRR+++ + + Sbjct: 193 RLSERRADSVRMALLSRGISPERV-ATRGYGKEYPVASNGTSSGRAMNRRVEVTISN 248 >gi|110834388|ref|YP_693247.1| OmpA family protein [Alcanivorax borkumensis SK2] gi|110647499|emb|CAL16975.1| OmpA family protein [Alcanivorax borkumensis SK2] Length = 362 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + +L ++ + L T + I GHTD+ A N LS RA + Sbjct: 259 FELDSANITASSRPILDRLVKALKSQTNFDVEIAGHTDS---SGSAEYNEGLSDRRAKAV 315 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 Q L+ G+S +R++ G+ +++ + NRR++ Sbjct: 316 RQYLIDQGISSERLTA-RGYGEVVPVASNETASGRAMNRRVE 356 >gi|290508935|ref|ZP_06548306.1| OmpA domain-containing protein [Klebsiella sp. 1_1_55] gi|289778329|gb|EFD86326.1| OmpA domain-containing protein [Klebsiella sp. 1_1_55] Length = 565 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 9/153 (5%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L + + ++ + V+ + + I + + +FD S P + +L Sbjct: 395 MRLIPFVEAAINDWAPPPPPRPVIKQVVQGPQTIRL---DSMALFDTGKSTLKPGSTKLL 451 Query: 253 -QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + A +I + GHTD+ + N +LSL RA + + +G + Sbjct: 452 VNSLLGIKAKPGWLIVVAGHTDSI---GNDKSNQQLSLKRAEAVRDWMRDTGDVPESCFA 508 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ R +++ + NRR++I + ++ Sbjct: 509 VQGYGASRPVASNETPDGRAQNRRVEISLVPQK 541 >gi|168260613|ref|ZP_02682586.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350258|gb|EDZ36889.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 220 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGADTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220 >gi|294678012|ref|YP_003578627.1| OmpA family protein [Rhodobacter capsulatus SB 1003] gi|294476832|gb|ADE86220.1| OmpA family protein [Rhodobacter capsulatus SB 1003] Length = 224 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 17/218 (7%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 S ++ + G + + +++ ++ Sbjct: 21 TEPYSQGYTGSSSADPNANMRGGAITGALIGGVLGATSNGDEKLEKAAAGAIVGGLIGGA 80 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +L A+++ L R G + I+ +F S+ P+ Sbjct: 81 IGNQLDKQAQELRRDLDTN---------GVSVVRQGNQL-IVTMPQDVLFAVDSAAVRPD 130 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L + L + + + GHTD+ A N RLS DRA + ++L+ +GV Sbjct: 131 LQRDLYTLSGSLNRYPDTTVDVVGHTDSD---GDAAYNQRLSQDRANAVARILIGAGVPS 187 Query: 307 DRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 R+ G + ++ + NRR++ ++ + Sbjct: 188 YRVVA-YGRGEEQPVASNLSAAGKAQNRRVEFIIRPNR 224 >gi|110642959|ref|YP_670689.1| OmpA family membrane protein [Escherichia coli 536] gi|191171277|ref|ZP_03032827.1| OmpA domain protein [Escherichia coli F11] gi|300976455|ref|ZP_07173440.1| OmpA family protein [Escherichia coli MS 200-1] gi|110344551|gb|ABG70788.1| putative OmpA-family membrane protein [Escherichia coli 536] gi|190908577|gb|EDV68166.1| OmpA domain protein [Escherichia coli F11] gi|300308536|gb|EFJ63056.1| OmpA family protein [Escherichia coli MS 200-1] gi|324015357|gb|EGB84576.1| OmpA family protein [Escherichia coli MS 60-1] Length = 550 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|126724952|ref|ZP_01740795.1| OmpA family protein [Rhodobacterales bacterium HTCC2150] gi|126706116|gb|EBA05206.1| OmpA family protein [Rhodobacterales bacterium HTCC2150] Length = 218 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 69/207 (33%), Gaps = 14/207 (6%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + +N ++ G + + ++N L + I A Q L Sbjct: 21 DTAANNERNGPNANANVGAAIGGMLGGFVGLKSDDNKLLKGVVGAGIGAAIGGAIGQSLD 80 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + L D+ G + ++ +FD S L K+ Sbjct: 81 RQAADLEKSLDNDD------VSIVNEGDRL-VVTLPQDILFDVDSDFVSSSLRGDLYKVA 133 Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L I I GHTD A N LS RA S +L+ GV+ R+ G Sbjct: 134 NNLNSYPNSTIQIIGHTDN---SGSAAHNQDLSARRAGSVSGILIDGGVAAGRVVS-FGR 189 Query: 316 AHHRLKIAS--DPMNSANRRIDILVED 340 + + + NRR++I++ Sbjct: 190 GEDQPVATNLTAEGRAENRRVEIIILP 216 >gi|124007750|ref|ZP_01692453.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123986872|gb|EAY26644.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 274 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S ++ +L + + + E I + GHT N RLS RA + Sbjct: 168 FKLGSDELDEKSKALLDSVAQKMMEFPEAEIEVSGHTCNI---GTKAGNLRLSKKRAEAV 224 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334 + LM+ G+ RI K +G+A +R + ++P NRR+ Sbjct: 225 RKYLMEYDGIDPKRI-KTAGYADNRPLVPNINEPNRKKNRRV 265 >gi|298372337|ref|ZP_06982327.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275241|gb|EFI16792.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058] Length = 700 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P + VL+ I +++ ++ + I GHTD+ N LS RA + Sbjct: 591 FDTGKATIKPVSRGVLKLIVDIMRNNPDYNLIIAGHTDSQ---GNDALNMTLSEKRAAAV 647 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + L G+ + R+ G+ + + NRR++ V Sbjct: 648 RKYLEDRGIDKRRLQS-KGYGETLPVATNKTAKGRAQNRRVEFTV 691 >gi|284037622|ref|YP_003387552.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283816915|gb|ADB38753.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 241 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD+SS + PE+ L K+ + L + VI I GHTD R N LS +R Sbjct: 134 DNVYFDQSSYVLRPESYPQLNKLIKTLVTIPKLVIEIAGHTDNV---GDKRLNQALSENR 190 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 A L+ +G+ E+R+ + +G+ + +D NRR++ +V Sbjct: 191 AKIITNYLVTNGIPENRL-RHNGYGSSKPAAPNDTEENKRKNRRVEFVVL 239 >gi|331658933|ref|ZP_08359875.1| OmpA family of outer membrane porins [Escherichia coli TA206] gi|331053515|gb|EGI25544.1| OmpA family of outer membrane porins [Escherichia coli TA206] Length = 550 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|34763092|ref|ZP_00144063.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887226|gb|EAA24326.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 202 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + +++ + L G A ++I++ F S+ L Sbjct: 64 DNQERELKAKLQGTQAQ-------VRKDGNALVINL---PGGVTFASDSANISSGFYSAL 113 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 I + L + E I + G+TD + N LS RA + Q L+ GV+ +RI Sbjct: 114 NGIAQSLNNYPETRIQVNGYTDNT---GKDAHNQELSQRRANAVAQYLIAQGVASNRIVA 170 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +GF ++ NRR++I + Q Sbjct: 171 -NGFGSSNPVASNSTQEGRLQNRRVEIKILPAQ 202 >gi|113868899|ref|YP_727388.1| outer membrane protein peptidoglycan-associated(lipo)proteins [Ralstonia eutropha H16] gi|113527675|emb|CAJ94020.1| outer membrane protein peptidoglycan-associated(lipo)proteins [Ralstonia eutropha H16] Length = 212 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 205 GLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HS 262 L D G G + ++I + FD S+ P VL ++ + L H Sbjct: 77 KLNKDTAGTGTQITEQPDGTLKVNI---PSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQ 133 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 ++ GHTD++ N +LS RA S L GV+ +R++ G + Sbjct: 134 DVSANVVGHTDST---GNPNYNMQLSQRRAQSVAGYLGDRGVARNRLTA-EGRGQSQPVA 189 Query: 323 AS--DPMNSANRRIDILVEDRQG 343 + + + NRR++I ++ QG Sbjct: 190 DNGTEAGRAQNRRVEIFLKPIQG 212 >gi|288942206|ref|YP_003444446.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288897578|gb|ADC63414.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 225 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +++ + L+ +A +++ + ++ F+ S P Sbjct: 79 MEEQQRDFERQLAPEIASGVIRVQKLPDHQ-----LLVGMTGATAFEVDSDRIQPGFYST 133 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+KI ++ + +++ GHTD++ A N LS RA S L +SGV RI Sbjct: 134 LEKISAIVRKYGKTQLAVSGHTDST---GAAAYNQTLSERRAASVGYYLERSGVLPQRIY 190 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 +G+ ++ ++ + NRR+DIL+ Sbjct: 191 S-AGYGMNQPIASNATEDGRRLNRRVDILIMP 221 >gi|78221730|ref|YP_383477.1| surface antigen protein [Geobacter metallireducens GS-15] gi|78192985|gb|ABB30752.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Geobacter metallireducens GS-15] Length = 218 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 12/205 (5%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + G L ++I + L + + + + K Sbjct: 22 PMTRTQTGAALGTGVGAAVGAGLGQAIGRNTESTLIGAAAGALAGGLTGGAIGNYMDKQE 81 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + VA+ V+G + + + ++ ++ +F +S++ P + ++ +VL Sbjct: 82 QAMRQAVAN--VEGASIQRDQNVLAVTF---KSDILFPINSAVLQPGANDEITRVAQVLT 136 Query: 261 HST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I+I GHTD++ N LS RA + L GV+ R++ I GF + Sbjct: 137 QYPATTITIAGHTDST---GSDALNQTLSERRATAVKNALAARGVAPARMNAI-GFGKSK 192 Query: 320 LK--IASDPMNSANRRIDILVEDRQ 342 +++ S NRR++I + +Q Sbjct: 193 PIADNSTEAGRSMNRRVEITIVPQQ 217 >gi|307545103|ref|YP_003897582.1| OmpA/MotB [Halomonas elongata DSM 2581] gi|307217127|emb|CBV42397.1| OmpA/MotB [Halomonas elongata DSM 2581] Length = 270 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ VL + L + + I GHTD+ A+ N LS RA S Sbjct: 168 FEFDSAQLTMGAESVLTDVASKLRANENVRVRIEGHTDSV---GPAQYNKDLSQRRADSV 224 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L G++ +R++ I G+ + ++D + NRR+++ Sbjct: 225 ASFLASQGIAANRMTTI-GYGEEQPVASNDTKAGRAENRRVEL 266 >gi|114707989|ref|ZP_01440881.1| OmpA family protein [Fulvimarina pelagi HTCC2506] gi|114536618|gb|EAU39750.1| OmpA family protein [Fulvimarina pelagi HTCC2506] Length = 221 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268 ++G TR G I I++ + F S LP L + VL E I ++ Sbjct: 89 QQLQGTGVSVTRVGDRI-ILNMPSNVTFPSDQSQILPGFYPTLDSVAIVLQKFDETIVNV 147 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 GHTD+ N LS RA S Q L GV+ +R++ G+ + +++ Sbjct: 148 YGHTDSQ---GGDGYNLSLSQQRASSVSQFLASRGVNPNRLN-TQGYGESQPIADNSTEA 203 Query: 327 MNSANRRIDILV 338 + NRR+++ + Sbjct: 204 GRARNRRVEVQI 215 >gi|126662605|ref|ZP_01733604.1| possible outer membrane protein [Flavobacteria bacterium BAL38] gi|126625984|gb|EAZ96673.1| possible outer membrane protein [Flavobacteria bacterium BAL38] Length = 467 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 92/261 (35%), Gaps = 25/261 (9%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G+ + + P+ D + +L N E+ ++ Sbjct: 227 AGLPEFKGCPDTDKDGIQDSEDACPEEAGTKELNGCPDNDGDGIINSEDACPEEKGTKMM 286 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C ++ D C + ++N P + + + +A ++ Sbjct: 287 NGCPDADGDGVADKDDNCPTV-----AGAKDNAGCPWPDTDGDGVADKDDKCPTVAGTVA 341 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + V+D+ +K + D T +F+ + +TI VLQ + +L Sbjct: 342 NNGCPEVSDDTMKK-------------LNDYGKTILFNSGKASFQKQTIPVLQAMTAILK 388 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 S+ GHTD++ N +LS +RA + L+++G+ R+S GF Sbjct: 389 EYPTAKFSLEGHTDST---GADALNQKLSEERAAAVKNFLVENGIDASRLSS-KGFGESM 444 Query: 320 LKIASDP--MNSANRRIDILV 338 ++ + NRR+++ + Sbjct: 445 PVDSNKTAKGKANNRRVEVKL 465 >gi|117621166|ref|YP_856420.1| OmpA family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562573|gb|ABK39521.1| OmpA family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 162 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 GL A+ I +K F T G + D N +F ++ P+T VV++K+G+ L Sbjct: 28 GLTAEQIAVLKEQGFRLTDEGWTL---DFSNRVLFANNADALTPKTRVVVEKLGKTLQEV 84 Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I GHTD++ A N +LS RA S VL+ G+ + + I G Sbjct: 85 GLNRARIDGHTDSN---GAADYNDQLSYKRAQSVADVLVSVGMPQANLD-IRGRGERDPI 140 Query: 322 --IASDPMNSANRRIDILVED 340 + + NRR+ I++ + Sbjct: 141 ADNKTAAGRAENRRVAIVISN 161 >gi|327397929|gb|AEA73286.1| MopB [Stenotrophomonas maltophilia] Length = 363 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 254 FDFDKSNLRPDAVAILSEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 310 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 311 YNYLTKNGVDAGRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 363 >gi|262375753|ref|ZP_06068985.1| OmpA/MotB [Acinetobacter lwoffii SH145] gi|262309356|gb|EEY90487.1| OmpA/MotB [Acinetobacter lwoffii SH145] Length = 215 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 80/188 (42%), Gaps = 27/188 (14%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S+ ++ L + + ++KR+ ++ + +++ A N+ + F+ Sbjct: 29 SVLQKTYAELRHKQELEQGGAAQQKRISEMLTDLKNSVDETGASNL---ISFDIADG--K 83 Query: 226 ISIIDQRNTPMFDKSSSIPLPE----TIVVLQKIGEVLAHSTE-VISIRGHTDASPFR-- 278 I++ + +F+ S+ P + Q+I L + + + + GHTD S + Sbjct: 84 ITLKEN----IFNVGSACITPSAAKTFKSLDQRIVSFLKENPKASVFVEGHTDNSIVKQP 139 Query: 279 --------NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN 328 + DN+ LS RA A ++++ S + + +++ G+ R DP + Sbjct: 140 VLDFKEKCTVYDDNFTLSAARAREARKLIISS-LDANEANRVVVAGYGDSRPLNGIDPSD 198 Query: 329 SANRRIDI 336 NRR++I Sbjct: 199 GRNRRVEI 206 >gi|254428815|ref|ZP_05042522.1| OmpA family protein [Alcanivorax sp. DG881] gi|196194984|gb|EDX89943.1| OmpA family protein [Alcanivorax sp. DG881] Length = 356 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S+ + ++ ++ + L T + I GHTD++ A N LS +RA + Sbjct: 253 FELNSAKLTATSRPLVDRLVKALKSQTNFDVEIAGHTDST---GSAEYNETLSDERAKAV 309 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 Q L+ +GV+ +R++ G+ +++ + NRR++ Sbjct: 310 RQYLIDNGVAAERLTA-RGYGEVVPVASNETSSGRAMNRRVE 350 >gi|108759406|ref|YP_634375.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108463286|gb|ABF88471.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 538 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S L I + L + V + I GHTD + N LS DRA + Sbjct: 433 FPVGQSTLSDSERRNLDAIADYLKANPGVSLRIEGHTDNT---GPEELNRTLSQDRADAV 489 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 Q L++ G+ R++ G+ + ++D SANRR++ + Sbjct: 490 RQYLIQQGIESSRLTA-KGYGPAQPIASNDTPEGRSANRRVEFV 532 >gi|4580974|gb|AAD24561.1|AF117969_1 OprF [Pseudomonas fluorescens] Length = 326 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 QVL+K GV+ RI+ + G+ R A++ + NRR++ VE Sbjct: 278 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|222034509|emb|CAP77251.1| hypothetical protein LF82_430 [Escherichia coli LF82] gi|312947346|gb|ADR28173.1| hypothetical protein NRG857_13805 [Escherichia coli O83:H1 str. NRG 857C] Length = 550 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|331004882|ref|ZP_08328299.1| OmpA/MotB [gamma proteobacterium IMCC1989] gi|330421336|gb|EGG95585.1| OmpA/MotB [gamma proteobacterium IMCC1989] Length = 232 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 E ++ + + + ++ L ++D + G T I I + Sbjct: 37 GFQLELSQNLEEETAKRKMEEQRRMALEQALSDPLATG---RVTLRDGRIGIS---GNVL 90 Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNWRLSL 289 F +SS +L + L +++ + G TD P + DNW LS Sbjct: 91 FANNSSTLQENGRELLNTLVAPLKIYLSEREQLLMVSGFTDDKPIQTGNLNFSDNWDLSA 150 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 RA + + L++ G+ + + F + + + + NRR++ Sbjct: 151 QRALTVTRALIEEGMPSSMVFAAA-FGAQQPVVPNTDRASRAKNRRVE 197 >gi|26249224|ref|NP_755264.1| hypothetical protein c3389 [Escherichia coli CFT073] gi|227888360|ref|ZP_04006165.1| OmpA family membrane protein [Escherichia coli 83972] gi|301049415|ref|ZP_07196377.1| OmpA family protein [Escherichia coli MS 185-1] gi|26109631|gb|AAN81834.1|AE016765_236 Hypothetical protein c3389 [Escherichia coli CFT073] gi|227834629|gb|EEJ45095.1| OmpA family membrane protein [Escherichia coli 83972] gi|300298792|gb|EFJ55177.1| OmpA family protein [Escherichia coli MS 185-1] gi|307554790|gb|ADN47565.1| OmpA family protein [Escherichia coli ABU 83972] Length = 550 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|320158865|ref|YP_004191243.1| outer membrane protein A [Vibrio vulnificus MO6-24/O] gi|319934177|gb|ADV89040.1| outer membrane protein A precursor [Vibrio vulnificus MO6-24/O] Length = 357 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q N +F SS L + EVL + I GHTD++ + N R+S Sbjct: 238 QYNQELFATGSSKLSAGGKQALTPLAEVLIKYPDAEAEIVGHTDST---GSEKVNQRISE 294 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA + L++ GV +++ K+SG + ++ + NRR+++ + Sbjct: 295 QRAQAVADYLVEQGVKAEQL-KVSGAGESQPIASNKTAEGRAQNRRVEVTI 344 >gi|13470497|ref|NP_102066.1| hypothetical protein mlr0220 [Mesorhizobium loti MAFF303099] gi|14021239|dbj|BAB47852.1| mlr0220 [Mesorhizobium loti MAFF303099] Length = 216 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270 ++G TR+G I I++ + F+ P VL + VL + + G Sbjct: 88 LEGTGVSVTRSGDQI-ILNMPSDITFNVDQDAVKPGFYPVLNSVALVLKKFKQTTVDVFG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD++ + N+ LS RA + L GV + R ++GF R ++ Sbjct: 147 HTDST---GGDQHNFDLSQRRALAVANYLSGQGVDQRRF-AVTGFGKTRPIASNATAAGR 202 Query: 331 --NRRIDI 336 NRR++I Sbjct: 203 EQNRRVEI 210 >gi|300980597|ref|ZP_07175094.1| OmpA family protein [Escherichia coli MS 45-1] gi|300409214|gb|EFJ92752.1| OmpA family protein [Escherichia coli MS 45-1] gi|315293784|gb|EFU53136.1| OmpA family protein [Escherichia coli MS 153-1] Length = 550 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|299137972|ref|ZP_07031152.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8] gi|298599902|gb|EFI56060.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8] Length = 513 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 102/258 (39%), Gaps = 20/258 (7%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D QN S D ++ + +V + + Q E ++ +Q++ Sbjct: 259 DLQNADTMDSSKHRDQKMEITYAREAVQKAEDARISSLRKQASERQQQERADKEQAQADA 318 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI-LAMKRKKRLQDLAKKISSTL 203 + ++ K+ + + + E A K + + +K+ + L Sbjct: 319 AQSQIAAANANAQAEAAAAAKARAEADAANARAQAAESQHNAQKSEADASAVREKLRAQL 378 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + ++A + G+++++ D +FD + P+T V L K+ +L Sbjct: 379 NSVLA--------TSESARGLIVNMSD----VLFDTAKFTLKPDTKVSLAKVATILQLYP 426 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + G+TD+ N +LS +RA + + L+++GV ++ +G+ ++ Sbjct: 427 GLKVQVEGYTDSV---GGDEYNQKLSENRANAVHDFLVQNGVPAANVTA-AGYGKNKPVA 482 Query: 323 AS--DPMNSANRRIDILV 338 + + NRR++++V Sbjct: 483 DNGTAAGRAQNRRVNLVV 500 >gi|347163|gb|AAA62423.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K GV+ R++ + G+ R A++ + NRR++ Sbjct: 275 KQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|146337865|ref|YP_001202913.1| hypothetical protein BRADO0750 [Bradyrhizobium sp. ORS278] gi|146190671|emb|CAL74675.1| hypothetical protein; putative Outer membrane protein containing OmpA/MotB domain [Bradyrhizobium sp. ORS278] Length = 429 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + + PE+ +L K+ ++ + I GHTD N RLS RA S Sbjct: 323 LFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHTDNV---GGDDYNMRLSDARAAS 379 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L + GV+ R++ G+ R + D + NRR++I+ Sbjct: 380 VRTWLTQHGVAAARLTS-HGYGKTRPVADNGTDQGRALNRRVEIV 423 >gi|86136455|ref|ZP_01055034.1| flagellar motor protein [Roseobacter sp. MED193] gi|85827329|gb|EAQ47525.1| flagellar motor protein [Roseobacter sp. MED193] Length = 791 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 17/290 (5%) Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 ++ + N A K Q +Q + LS + ++ + Q Sbjct: 499 QQRLLAALNAQQDAEAGAEKDRSLAQERAALLAQAQAALSDQKTVSAEAQRETALLNQQV 558 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 + + + + Q+ + + + + Sbjct: 559 AALREQLGGLQAILDDYQARDDAQQVQLQNLGQDLNSALARAASEERRRRLLEESERKRL 618 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS--IIDQRNTPMFDK 239 + A + + + L K + L ++ + ++ G+ I + +F Sbjct: 619 EAEAAELASKAESLETK-AQDLERYRSEFFGRLRNLLGSQEGVRIEGDRFVFASEVLFAS 677 Query: 240 SSSIPLPETIVVLQKIGEVLAHS--------TEVISIRGHTDASPFRNI--ARDNWRLSL 289 S+ + K+ ++L +I + GHTD + DNW LS Sbjct: 678 GSADLSRAGEGEVAKVAQILQSVAAEIPPELNWIIRVDGHTDNTAMAGSEKYSDNWELSQ 737 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 RA S + ++++ G++ DR++ +GF + D + NRRI++ Sbjct: 738 GRALSVVRFMIENLGIAPDRLAA-NGFGEFQPVNTDDTPEARAQNRRIEL 786 >gi|283786451|ref|YP_003366316.1| T6SS protein Cts1O [Citrobacter rodentium ICC168] gi|282949905|emb|CBG89530.1| T6SS protein Cts1O [Citrobacter rodentium ICC168] Length = 594 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293 P+F SS +P++ L I V+ S E I GH+D++ A N LS RA Sbjct: 488 PLFANGSSNLMPDSEKTLLTIVPVIRRSPEKTFLIIGHSDST---GSAATNMALSAARAQ 544 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + L+ G+ + G R +D + NRR++I+ R Sbjct: 545 VIKEWLVAHTGLPAGQFI-TEGAGDTRPIANNDTKEGRAQNRRVEIIPLPR 594 >gi|326319363|ref|YP_004237035.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376199|gb|ADX48468.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 217 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 18/159 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++ +++ G V+ +T + + D + F + S P Sbjct: 72 QHMERQKQEMQQVTQG------TGVVVTQTQDNQLKL---DIPSDISFATNRSDIQPNFA 122 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + E L ++ + I G+TD++ +I LSLDRA S L GVS R Sbjct: 123 PVLDRFAEGLRNNPNAEVRIVGYTDSTGNDSINNP---LSLDRATSTRNYLTSRGVSGAR 179 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV--EDRQG 343 I ++ G +D + NRR++I V RQG Sbjct: 180 I-QVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG 217 >gi|229592015|ref|YP_002874134.1| putative outer membrane porin A protein [Pseudomonas fluorescens SBW25] gi|229363881|emb|CAY51363.1| putative outer membrane porin A protein [Pseudomonas fluorescens SBW25] Length = 326 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 QVL+K GV+ RI+ + G+ R A++ + NRR++ VE Sbjct: 278 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|260597724|ref|YP_003210295.1| hypothetical protein CTU_19320 [Cronobacter turicensis z3032] gi|260216901|emb|CBA30471.1| hypothetical protein CTU_19320 [Cronobacter turicensis z3032] Length = 520 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 6/139 (4%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTE 264 L + + + T + + + +FD P T V++ + + A Sbjct: 363 LALQQAIDSYVSQPTPRDSIPHTVRLDSLSLFDTGQWRLKPGSTKVLVNALVGIKAKPGW 422 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 +I + GHTD R N +LSL RA S + +G + + G+ R + Sbjct: 423 LIVVAGHTDDV---GDERANQQLSLKRAESVRDWMRDTGDVPESCFAVQGYGESRPAAPN 479 Query: 325 DPM--NSANRRIDILVEDR 341 + NRR++I + + Sbjct: 480 TTTQGRALNRRVEISLVPQ 498 >gi|332669308|ref|YP_004452316.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338346|gb|AEE44929.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484] Length = 377 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 16/123 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 G I + +FD S + L + +VLA + GHTD+ + Sbjct: 262 GTRIVL---DAAVLFDFGSHAVRADARATLDAVAQVLADVP-AARVEGHTDSV---SSDE 314 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSANRRID 335 N LS RA + L + GVS + GF R ++ NRR++ Sbjct: 315 LNQALSERRADAVATALGERGVSAA--LETQGFGESRPVAPNEVDGVDNPAGRQLNRRVE 372 Query: 336 ILV 338 I+V Sbjct: 373 IVV 375 >gi|149913202|ref|ZP_01901736.1| OmpA family domain protein [Roseobacter sp. AzwK-3b] gi|149813608|gb|EDM73434.1| OmpA family domain protein [Roseobacter sp. AzwK-3b] Length = 222 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 13/150 (8%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ + + L + D+ + T TG + I+ +FD S+ L Sbjct: 80 NMLDRQEAQLRQQLDDD-----RVQITNTGDRL-IVTLPQDILFDVDSASVRSGLRDDLM 133 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + L + + + GHTD + A N +LS RA + VLM GV+ RI + Sbjct: 134 TVASSLRDYPDSTVQVVGHTDNT---GDAGYNQQLSERRANAVADVLMDGGVAFSRI-QT 189 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVED 340 G ++ + D + NRR++I++ Sbjct: 190 FGRGENQPVADNLTDAGRAQNRRVEIVILP 219 >gi|190895276|ref|YP_001985569.1| hypothetical protein RHECIAT_PC0000949 [Rhizobium etli CIAT 652] gi|190700937|gb|ACE95019.1| hypothetical conserved membrane protein [Rhizobium etli CIAT 652] gi|327193548|gb|EGE60440.1| hypothetical conserved membrane protein [Rhizobium etli CNPAF512] Length = 441 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPF--RNIARDNWRLSLD 290 +F + ++ I VL + I+I GHTD P N +N RLS Sbjct: 329 LFQSARPELTKGFEPLVASIATVLKQNAELIGGITITGHTDNVPLQASNPLSNNQRLSEA 388 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 RA + +L SGV ++ G A +D +ANRRI+IL++ R Sbjct: 389 RAATIASLLAASGVPAGQLKS-QGRAATEPLAGNDSREGRAANRRIEILIQKR 440 >gi|110638825|ref|YP_679034.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281506|gb|ABG59692.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 320 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F+ S + + + L + +VL ++ + I GHTD N LS R Sbjct: 214 DNLLFETGSDVIVSSSFQSLDDLAKVLRNNPLYNLYIEGHTDNV---GDDEANLDLSKRR 270 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 A S L+ GV R++ GF R +D NRR+++ + Sbjct: 271 AISVKNYLVSKGVGAARLT-TDGFGEARPVDTNDTPEGRKKNRRVEMHIL 319 >gi|56415540|ref|YP_152615.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56129797|gb|AAV79303.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 216 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 79 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 137 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 138 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 193 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 194 ASNSTAEGKAQNRRVEITLSPLQ 216 >gi|115375599|ref|ZP_01462856.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|310823174|ref|YP_003955532.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115367375|gb|EAU66353.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|309396246|gb|ADO73705.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 468 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 225 LISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIA 281 I I Q N F S+ +++ +L+ I VL + + I GHTD+ Sbjct: 354 RIEIKKQIN---FGTGSAKIVGAQSLAILKDIALVLVDMPIIKKVRIEGHTDSQ---GAD 407 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N RLS RA + L+K G+ R+ + G+ + ++ + NRR + + Sbjct: 408 ASNLRLSQKRADAVMAQLIKLGIDPGRLEAV-GYGETKPIASNATKAGRAENRRTEFNIV 466 Query: 340 DR 341 ++ Sbjct: 467 EQ 468 >gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] gi|300076456|gb|ADJ65855.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 16/152 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 R+++ + + G + +T + + I + FD + PE Sbjct: 74 NRMENQKRAMEEATQGTGVQ------VSQTADNRLKLEI---PSDISFDTGRADIKPEMR 124 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + L + ++I GHTD + N LSL RA L GV+ +R Sbjct: 125 PVLDRFAATLVENPATTVTIVGHTDNT---GSDAINDPLSLQRASRTRDYLSSRGVAANR 181 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 I G H +A+ D + NRR++I V Sbjct: 182 F-SIQGRGSHEPLVANTSDANRARNRRVEIFV 212 >gi|295675817|ref|YP_003604341.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295435660|gb|ADG14830.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 217 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT 272 G I +Q + + FD SS P VL ++ + L + EV+ S+ GHT Sbjct: 85 GTGTQITEQPDGSLKLNIPSSVTFDTSSYAIKPTFAPVLDQLAQTLQQNPEVVASVVGHT 144 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D + + N LS++RA S L + G++ R+S +G ++ ++ +A Sbjct: 145 DNT---GSLQYNQTLSVNRAQSVTGYLTQRGIAPQRLSA-TGMGPNQPIADNNTEAGRAA 200 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 201 NRRVEIYL 208 >gi|254436394|ref|ZP_05049900.1| Thrombospondin type 3 repeat family [Nitrosococcus oceani AFC27] gi|207088084|gb|EDZ65357.1| Thrombospondin type 3 repeat family [Nitrosococcus oceani AFC27] Length = 344 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P +L K+ E + + I+I GHTD++ A N RLS RA +A Sbjct: 240 FGFDSAKLSPNAHTILDKVVENMRTYPDLEITIAGHTDST---GNADYNQRLSQLRAEAA 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L G+ R+ I G+ R ++ + NRR+++ Sbjct: 297 MNYLASKGIDPSRMEAI-GYGEERPIASNSTKEGRAKNRRVEL 338 >gi|319783265|ref|YP_004142741.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169153|gb|ADV12691.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 216 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270 ++G TR+G I I++ + F+ P VL + VL + + G Sbjct: 88 LEGTGVSVTRSGDQI-ILNMPSDITFNSDQDAVKPGFYQVLNSVALVLKKFKQTTVDVFG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ + N+ LS RA + L GV + R ++GF R ++ Sbjct: 147 HTDST---GGDQHNFDLSQRRALAVANYLSGQGVDQRRF-AVTGFGKTRPVASNATAEGR 202 Query: 329 SANRRIDI 336 + NRR++I Sbjct: 203 AQNRRVEI 210 >gi|167770207|ref|ZP_02442260.1| hypothetical protein ANACOL_01550 [Anaerotruncus colihominis DSM 17241] gi|167667529|gb|EDS11659.1| hypothetical protein ANACOL_01550 [Anaerotruncus colihominis DSM 17241] Length = 321 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 10/214 (4%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++++ E + + + + + ++ P +K + +++ Sbjct: 39 DAEKWEMIVKAFSNPGDDTQQVVIGNAQDQGDQLLTATGDMPPPGDKESLERTDQQMPAN 98 Query: 196 AKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++ L A + V + I +N F S+ L + +L Sbjct: 99 FDELYEYLKSYAASQGMEDSVQISKGDGRVYIRF---QNNLFFAPDSAAILADAYPLLDF 155 Query: 255 IGEVLAHSTEVI---SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +G+ L + I +I GHT A P + +W LS +RA + L + + Sbjct: 156 LGDCLNAVDDEILLVNINGHTAAVPNGETYQVSDWMLSSERASNIAIYLDDKKDVDPKKL 215 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + G+ + +D + NRR+DI++ Q Sbjct: 216 RPMGYGKNFPVADNDTIAGREENRRVDIVIISNQ 249 Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 58/138 (42%), Gaps = 3/138 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +KKKV P + G+W Y+D +T+L+ FF++++ +++ D + + I + F+ G + Sbjct: 1 MKKKVR---PPEDTGTWMNTYSDLVTLLLTFFVLLYSMSSVDAEKWEMIVKAFSNPGDDT 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G +Q ++ + D+ + + + ++ +Y + + + Sbjct: 58 QQVVIGNAQDQGDQLLTATGDMPPPGDKESLERTDQQMPANFDELYEYLKSYAASQGMED 117 Query: 137 SQQSEHCKNSLTRDSEKG 154 S Q + + Sbjct: 118 SVQISKGDGRVYIRFQNN 135 >gi|288550313|ref|ZP_05969946.2| membrane protein OmpA-family [Enterobacter cancerogenus ATCC 35316] gi|288315417|gb|EFC54355.1| membrane protein OmpA-family [Enterobacter cancerogenus ATCC 35316] Length = 563 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGE 257 + + ++ + ++ + + I + + +FD P + +L + Sbjct: 398 VEAAINDWTPPPPPRPIIKQIVQGPQTIRL---DSMSLFDTGRWALKPGSTKLLVNSLVG 454 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + A +I + GHTD++ + N LSL RA S + +G + + G+ Sbjct: 455 IKAKPGWLIVVAGHTDST---GDDKSNQVLSLKRAESVRDWMRDTGDVPESCFAVQGYGE 511 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 R +D + NRR++I + + Sbjct: 512 SRPVATNDTPEGRALNRRVEISLVPQ 537 >gi|167990874|ref|ZP_02571973.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330659|gb|EDZ17423.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 220 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220 >gi|120437695|ref|YP_863381.1| thrombospondin repeat-containing OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117579845|emb|CAL68314.1| OmpA/MotB family outer membrane protein containing thrombospondin 3 repeats [Gramella forsetii KT0803] Length = 472 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIAR 282 ++ + + T +FD + + PE+ LQ I +++ + I I GHTD+ Sbjct: 345 VISELNEYSKTVLFDLNKATIRPESEEALQSIHDIMHEYSTTIFHIEGHTDS---SGSDS 401 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 N +LS +RA S L ++G+ R++ G+ + + NRR++I ++ Sbjct: 402 YNMKLSKERAASVATWLEQNGIPAKRLTS-EGYGETQPIATNSTAKGRQDNRRVEISLDK 460 Query: 341 RQ 342 + Sbjct: 461 DK 462 >gi|15964027|ref|NP_384380.1| hypothetical protein SMc00354 [Sinorhizobium meliloti 1021] gi|15073203|emb|CAC41711.1| Probable porin [Sinorhizobium meliloti 1021] Length = 221 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + F +P L + VL + I + G Sbjct: 91 LQGTGVSVTRAGDRI-ILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFNKTLIDVDG 149 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 HTD++ A N LS RA S L GV + R+S + G+ R ++ Sbjct: 150 HTDST---GSASYNQGLSERRAASVANYLASRGVDQRRMSAV-GYGLERPIASNATEVGR 205 Query: 329 SANRRIDILVED-RQG 343 + NRR++I + +QG Sbjct: 206 AQNRRVEISIAPIKQG 221 >gi|115378368|ref|ZP_01465532.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] gi|115364644|gb|EAU63715.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 494 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279 G I I++ N F I L E+ +L+++ ++L E + + GHTD+ R+ Sbjct: 343 QGNKILILEPIN---FATDQDILLSESWPILEEVSQMLKTHPEIKRLLVEGHTDS---RS 396 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 N LS RA S L +SGV +R+ GF R ++ + NRR++ Sbjct: 397 SDEYNLELSRRRAASIRVYLEESGVESERLCS-QGFGRSRPVADNKNEEGMALNRRVEFT 455 Query: 338 VEDRQG 343 V Sbjct: 456 VLPPPA 461 >gi|327405440|ref|YP_004346278.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320948|gb|AEA45440.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 367 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 7/143 (4%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + V D+I + T + + + + F+ SI LP L+ Sbjct: 227 LEENKKPPVQDSIHEKANTVDTSINLTVGDVYVLHNLQFESGKSILLPNEYPELENFIRH 286 Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + + + GHTD DN LSL+RA + Q L+ G+++++I I G Sbjct: 287 VEKYPNQTLLVTGHTDNV---GNKGDNKMLSLERANAIKQYLVAKGINKNKIV-IEGKGD 342 Query: 318 HRLKIASDPMNSA--NRRIDILV 338 +++ NRR++I + Sbjct: 343 EIPLDSNETEEGRKKNRRVEISI 365 >gi|317060136|ref|ZP_07924621.1| outer membrane protein [Fusobacterium sp. D12] gi|313685812|gb|EFS22647.1| outer membrane protein [Fusobacterium sp. D12] Length = 193 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + R G IS+ F S+ L I +VL E I ++G Sbjct: 64 LKNTAVQVQRDGENISLY-LPGGVTFASDSAQISGNFYSALNSIAQVLVQYPETQILVQG 122 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ + N LS RA S Q L+ GV+ +R++ GF + + Sbjct: 123 HTDST---GSFQHNMDLSNRRANSVKQYLIGQGVASNRLTS-QGFGPNNPVADNSTPEGR 178 Query: 329 SANRRIDILVEDR 341 NRR++I + + Sbjct: 179 QMNRRVEIKIAPK 191 >gi|182678181|ref|YP_001832327.1| OmpA/MotB domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634064|gb|ACB94838.1| OmpA/MotB domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 459 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ + + + +L +I + H E I I GHTD++ N LS RA + Sbjct: 357 LFETNGATISKSSEGLLDRIVTTIGHCPEATIEISGHTDST---GNEPFNLALSERRAKA 413 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 + L+ +G+ D++S +G+ R ++D + NRRI+ V+ Sbjct: 414 VFDYLVAAGIPADKLSA-TGYGSSRPVASNDTEEGRAKNRRIEFTVK 459 >gi|225849650|ref|YP_002729884.1| OmpA family protein [Persephonella marina EX-H1] gi|225646341|gb|ACO04527.1| OmpA family protein [Persephonella marina EX-H1] Length = 235 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 13/153 (8%) Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L K I+ + + + E I++ + N +F S+ ++ L+ Sbjct: 72 LQKDIALEIKNRIKRILPMHAYQIEAIENYIVVRLF---NDVIFKPDSAELTEKSKKALR 128 Query: 254 KIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + L + + I GH + D W+LS+ RA Q L++ GV+ ++I Sbjct: 129 GVANALKALDKAYSEVLINGH---AYVVTKGIDPWKLSIKRAVVVAQYLIEHGVNPEKI- 184 Query: 311 KISGFAHHRLKIA-SDPMN-SANRRIDILVEDR 341 ++G+ + + + P+ N R++I ++ + Sbjct: 185 AVTGYGNTKPVYTWNHPLLKRRNDRVEIFIKLK 217 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 60/144 (41%), Gaps = 4/144 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + + +W I ++D M++L+ FF++++ ++ D YF + Sbjct: 1 MARKKKEECPS--VPAWIISFSDLMSLLLTFFILLYSMSVLDIKKLMKFLWYFQGEEAFV 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T + + + ++ +I I + ++ +I + + + IF + Sbjct: 59 ATKTVTVIPPISLLQKDIALEIKNRIKRILPMHA--YQIEAIENYIVVRLFNDVIFKPDS 116 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKS 160 ++ +E K +L + K L K+ Sbjct: 117 AELTEKSKKALRGVANALKALDKA 140 >gi|197364467|ref|YP_002144104.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095944|emb|CAR61525.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 205 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 68 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 126 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 127 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 182 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 183 ASNSTAEGKAQNRRVEITLSPLQ 205 >gi|307727734|ref|YP_003910947.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307588259|gb|ADN61656.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 321 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 10/154 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ + + Q LA +++ L+ I G+ + G+L + R F+ S+ Sbjct: 170 EVRNESQRQQLASDMANALNPTYT--IKNGLRVSASEQGLLDQTLANRTIE-FETGSATL 226 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 + +L ++ + T ++I GHTD N LS RA + L+ G Sbjct: 227 TAQGRAILDQMAAAMQKMTTRTVAIIGHTDN---SGNRTSNIALSQARADAVKGYLVAKG 283 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + +++ +G + +D + NRRI+ Sbjct: 284 IPPQQMT-TTGVGPDQPIATNDTADGRARNRRIE 316 >gi|298530631|ref|ZP_07018033.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510005|gb|EFI33909.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 274 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 17/154 (11%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+ D+ K + F R + I +++ + E I VL K+ VL Sbjct: 93 KQLMPLLWDDKRKDLNFLEKRF---VQIFSINTELLYEPGETELSSEGIEVLDKVVPVLK 149 Query: 261 HSTEVISIRGHTD-----------ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + GHT A I WRLSLDRA + Y+ +M+ GV + + Sbjct: 150 DLEYPVLLAGHTSLVRDEFGAGWQALKDDVIINPTWRLSLDRALNVYRYIMEQGVDPE-M 208 Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 ++ F + + ++ NRR++I+++ R Sbjct: 209 VRLEAFGEFQPRYGTRTEANRRQNRRVEIVLDRR 242 >gi|313500273|gb|ADR61639.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 263 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 18/235 (7%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + Q+ T+D++ + +++ K+ Sbjct: 21 SHDPNANLEAARTNFSSLQSDPQASKVAALETKDAQDWLNKADKAYMDREDEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRTAEADLKNASAERAKAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + K+ + L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSNAYPNVTKLAQFLQENPERKVIVEGYTDSV---GSANYNQT 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L+++GV RI S+ G + +S+ + NRR+++ + + Sbjct: 194 LSERRANSVRMALVRAGVDPARIVSQGYGKEYPVADNSSNSGRAQNRRVEVTISN 248 >gi|257126323|ref|YP_003164437.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257050262|gb|ACV39446.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 215 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 GV T G I + N FD +S + P+ L + VL + I + GHT Sbjct: 89 GVEVRRTGEG-EIKLTAPENIT-FDLNSYVVKPQFRGTLDSVATVLKTYPDSTIIVSGHT 146 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D S N A +N LS++RA S L G++ R++ G+ A++ + Sbjct: 147 DTS--GNDAINN-PLSVNRAASVASYLQSQGIASSRMT-YRGYGSKMPIASNATEAGRAQ 202 Query: 331 NRRIDILVEDRQ 342 NRR++I + Q Sbjct: 203 NRRVEIAIIANQ 214 >gi|196231290|ref|ZP_03130149.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] gi|196224626|gb|EDY19137.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] Length = 316 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 90/265 (33%), Gaps = 16/265 (6%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P + + ++I E S T K + + S + L Sbjct: 54 RPAITPIKMVRVNITEPPAAESKTETTPKTPVKPIKIEETKPFADEVDLKPSAPDVSPLV 113 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFL--PPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 K DL S+ E P ++ LA+ R+ +++ A Sbjct: 114 PAKPKNLDLSGFETPASSVAALEKQLSAKPGAILDQSLAVGRQPKIKLPAGPKGGEGGVG 173 Query: 207 VADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +I + I + +F+ + LP+ I LQK+ +++ + Sbjct: 174 SDGSIPGRASLNDALGNVGAFNNKPIAMQGGALFEWGKAELLPQAIQNLQKLAQLIRLNP 233 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 + I GHTD + N LS RA S L+ + G+ RI+ + G A Sbjct: 234 KATFIISGHTDHT---GTHEGNLILSQQRADSVRDWLVANLGIDPMRITTV-GKADDEAF 289 Query: 322 IASDP-----MNSANRRIDILVEDR 341 P + NRR++I+++ R Sbjct: 290 PNLGPDKSIEEQAPNRRVEIVIKTR 314 >gi|310818239|ref|YP_003950597.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309391311|gb|ADO68770.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 565 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279 G I I++ N F I L E+ +L+++ ++L E + + GHTD+ R+ Sbjct: 414 QGNKILILEPIN---FATDQDILLSESWPILEEVSQMLKTHPEIKRLLVEGHTDS---RS 467 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 N LS RA S L +SGV +R+ GF R ++ + NRR++ Sbjct: 468 SDEYNLELSRRRAASIRVYLEESGVESERLCS-QGFGRSRPVADNKNEEGMALNRRVEFT 526 Query: 338 VEDRQG 343 V Sbjct: 527 VLPPPA 532 >gi|189179677|dbj|BAG39458.1| outer membrane protein [Gluconacetobacter intermedius] Length = 364 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + + ++ + + H T I + G+TD A P + N LS+ R Sbjct: 256 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTSAHPGPRGEKYNLGLSMRR 315 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV + I + G+ + + D NRR++I++ Sbjct: 316 ADSVKAELIRDGVPANAID-VHGYGEAHPLVPTGPDTREPQNRRVEIIL 363 >gi|153867892|ref|ZP_01998087.1| OmpA family protein [Beggiatoa sp. SS] gi|152144788|gb|EDN71913.1| OmpA family protein [Beggiatoa sp. SS] Length = 170 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 12/128 (9%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP 276 T G+ ++ + F + LPE + + E++ + I++ GHTD Sbjct: 48 ETDRGLQFTLY----SVFFKTGKAKLLPEGEQQITEFVELIQEYDDSRAIAVEGHTDN-- 101 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 R N RLS RA + L+ G+ +R+ I GF + N NRR+ Sbjct: 102 -RGSKAYNQRLSKRRAETVQNALITKGIEPNRLI-IKGFGEKEPLTTNATKNGRQQNRRV 159 Query: 335 DILVEDRQ 342 +I++ Q Sbjct: 160 EIILLKNQ 167 >gi|307301173|ref|ZP_07580935.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] gi|307321074|ref|ZP_07600479.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306893246|gb|EFN24027.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306903629|gb|EFN34216.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] Length = 227 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + F +P L + VL + I + G Sbjct: 97 LQGTGVSVTRAGDRI-ILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFNKTLIDVDG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 HTD++ A N LS RA S L GV + R+S + G+ R ++ Sbjct: 156 HTDST---GSASYNQGLSERRAASVANYLASRGVDQRRMSAV-GYGLERPIASNATEVGR 211 Query: 329 SANRRIDILVED-RQG 343 + NRR++I + +QG Sbjct: 212 AQNRRVEISIAPIKQG 227 >gi|66967954|gb|AAY59422.1| outer membrane protein A [Allochromatium vinosum] Length = 225 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +++ + L+ +A +++ + ++ F+ S P Sbjct: 79 MEEQQRDFERQLAPEIASGVIRVQKLPDHQ-----LLVGMTGATAFEVDSDRIRPGFYST 133 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+KI ++ + +++ GHTD++ A N LS RA S L +SGV RI Sbjct: 134 LEKISAIVRKYGKTQLAVSGHTDST---GAAAYNQTLSERRAASVGYYLERSGVLPQRIY 190 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 +G+ ++ ++ + NRR+DIL+ Sbjct: 191 S-AGYGMNQPIASNATEDGRRLNRRVDILIMP 221 >gi|257091971|ref|YP_003165612.1| hypothetical protein CAP2UW1_0326 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044495|gb|ACV33683.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 214 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 14/167 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++ + + + + +K L +A + G T I I + + Sbjct: 38 GVQLELATHLEAEVQKRQMEEKRRMALEKALAIPLATG---RVTLNNGRIGIS---GSVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFR---NIARDNWRLSL 289 F +S P ++L+ + L E++ + G TD P + + DNW LS Sbjct: 92 FALNSDQLQPAGRLLLKSLVAPLRVYLGERDELLMVSGFTDDVPIQHGNSRFVDNWELSA 151 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335 RA + + L+ G+ I + G A D S NRR++ Sbjct: 152 QRALTVTRALIDEGMPSSLIFAAAFGTEQPVASNADDRGRSQNRRVE 198 >gi|16762663|ref|NP_458280.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766931|ref|NP_462546.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144150|ref|NP_807492.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62182147|ref|YP_218564.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505818|ref|YP_001572930.1| putative outer membrane lipoprotein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616710|ref|YP_001590675.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549121|ref|ZP_02342880.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232486|ref|ZP_02657544.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235246|ref|ZP_02660304.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241813|ref|ZP_02666745.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465059|ref|ZP_02698951.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818532|ref|ZP_02830532.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446335|ref|YP_002042894.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450414|ref|YP_002047675.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470919|ref|ZP_03076903.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738075|ref|YP_002116578.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250152|ref|YP_002148575.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264832|ref|ZP_03164906.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245549|ref|YP_002217605.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387506|ref|ZP_03214118.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928737|ref|ZP_03219936.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213426937|ref|ZP_03359687.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580286|ref|ZP_03362112.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622354|ref|ZP_03375137.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646868|ref|ZP_03376921.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852846|ref|ZP_03382378.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585444|ref|YP_002639243.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910327|ref|ZP_04654164.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289811587|ref|ZP_06542216.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824292|ref|ZP_06543885.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25512154|pir||AC0982 probable outer membrane protein STY4157 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422210|gb|AAL22505.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504969|emb|CAD07983.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139787|gb|AAO71352.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129780|gb|AAX67483.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160867165|gb|ABX23788.1| hypothetical protein SARI_03994 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366074|gb|ABX69842.1| hypothetical protein SPAB_04529 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404998|gb|ACF65220.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408718|gb|ACF68937.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457283|gb|EDX46122.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713577|gb|ACF92798.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632363|gb|EDX50847.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213855|gb|ACH51252.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243087|gb|EDY25707.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291562|gb|EDY30914.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940065|gb|ACH77398.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604604|gb|EDZ03149.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322170|gb|EDZ07368.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325701|gb|EDZ13540.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333235|gb|EDZ19999.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338706|gb|EDZ25470.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344463|gb|EDZ31227.1| inner membrane lipoprotein YiaD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224469972|gb|ACN47802.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|267995894|gb|ACY90779.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914671|dbj|BAJ38645.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088065|emb|CBY97827.1| Inner membrane lipoprotein yiaD Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226700|gb|EFX51750.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613966|gb|EFY10902.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620335|gb|EFY17203.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625340|gb|EFY22167.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629993|gb|EFY26766.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634183|gb|EFY30918.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635916|gb|EFY32625.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643166|gb|EFY39740.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644613|gb|EFY41149.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650855|gb|EFY47247.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652981|gb|EFY49316.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659944|gb|EFY56184.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663277|gb|EFY59481.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668763|gb|EFY64916.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674434|gb|EFY70527.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678358|gb|EFY74419.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680864|gb|EFY76898.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687200|gb|EFY83173.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716635|gb|EFZ08206.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132006|gb|ADX19436.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192159|gb|EFZ77392.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200663|gb|EFZ85737.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201373|gb|EFZ86439.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206773|gb|EFZ91727.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211797|gb|EFZ96629.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216156|gb|EGA00884.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220379|gb|EGA04833.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226236|gb|EGA10451.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228356|gb|EGA12487.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234177|gb|EGA18265.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237162|gb|EGA21229.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244681|gb|EGA28685.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249162|gb|EGA33080.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250719|gb|EGA34599.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257594|gb|EGA41281.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262303|gb|EGA45864.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266142|gb|EGA49633.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268777|gb|EGA52235.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625391|gb|EGE31736.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629887|gb|EGE36230.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990496|gb|AEF09479.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 220 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220 >gi|319785152|ref|YP_004144628.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171040|gb|ADV14578.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 335 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + PE+ L +I +VL + I GHTD A N LS RA + Sbjct: 232 LFDYNQDAVKPESKPALDEIAKVLTDKPALRLKIIGHTDN---AGSAAYNLDLSTRRAAN 288 Query: 295 AYQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339 L+ G+ R+S + +G + +D + NRR++++V+ Sbjct: 289 VSAALVGGYGIDPARLSFEGAGLSRPIESNDTDEGRAKNRRVELVVQ 335 >gi|116329294|ref|YP_799014.1| flagellar motor protein MotB [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330099|ref|YP_799817.1| flagellar motor protein MotB [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122038|gb|ABJ80081.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123788|gb|ABJ75059.1| Endoflagellar motor protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 275 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 21/176 (11%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E + + K L K + V VK G++IS++ F+ Sbjct: 78 ESLPSQTTGKALSKSKKLATELFKPEVEAGKVK---ITEDERGLIISLVSAD---YFNPG 131 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---------NIARDNWRLSLDR 291 S+I + L+K ++ + + GH DA+ +NW L+ R Sbjct: 132 SAILTDSIKITLRKASSLIKELDRFVRVEGHCDANALNPGVAPGKEERAYINNWDLAGAR 191 Query: 292 A-YSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSA-NRRIDILVEDRQ 342 A + ++ + +S F R + A P A NRRIDI+V + Sbjct: 192 AINATDYIINVEKLDPSWFQAVS-FGAFRPLVIEYAGTPEAKAYNRRIDIVVMTEK 246 Score = 44.1 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + N+ + + Y D +T+L+ FF++++ T+ + I F Sbjct: 3 KSKCPECIQNIPEYMLTYGDMVTLLLCFFIMLYTTGKTNAIEMQIILSAFKT-------- 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 + G FD + ++ ++I+ ++ + Sbjct: 55 TTGFFDGGQTLSKGRLEEMGMNIESLPSQTTG 86 >gi|323700139|ref|ZP_08112051.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323460071|gb|EGB15936.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 241 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 10/205 (4%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + + LT+ + DL + + L ++ + +++R++DL Sbjct: 37 MASMDNSILTKVTLTTADLGLLDKRGSGRVNAKERLIVELMEKPWEVLDKQQRIKDLLFP 96 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + + + G+ + D +F S ++ ++ + Sbjct: 97 DDILPDEISKAELNDNLDVLAKQDGVALVFTD---RILFAPGGSELSDTGKFLMARLVPM 153 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + I++ G+TDA + + LS DRA + L+ GV + R +S + Sbjct: 154 MTQTDAPINVAGYTDA---SDATQTPLELSGDRALAVLAFLVDKGVHDSRF-SLSAYGDA 209 Query: 319 RLKIAS---DPMNSANRRIDILVED 340 I + NRR++IL++ Sbjct: 210 FPVINELGRPVASPRNRRVEILLKT 234 >gi|171915499|ref|ZP_02930969.1| OmpA/MotB domain protein [Verrucomicrobium spinosum DSM 4136] Length = 355 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 98/306 (32%), Gaps = 26/306 (8%) Query: 53 IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112 + KA NP A + I D P +++ ++ + + D Sbjct: 55 SMLPVTQTKAKADRIAINPEALKEQQAIQHIPDLIAPSDKAEP-QLKADLQDIAEMIPED 113 Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN---- 168 + T + + + + + D G DL S D KS Sbjct: 114 RPLNLTPDVDKVTNFLAPKSNPNATSPAHAPSMAAIADMAPGPDLASSMDAIKSSALRQA 173 Query: 169 -KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL-- 225 ++ LP +K L K L L + + A + R G + Sbjct: 174 VSDQQLVLPAKPLDKELEGMDGKLLDRLNNQSKAGDGSPRAMAGYSNLEDLLARGGAVNA 233 Query: 226 ----ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 I + +F+ S + L K+G ++ + I GHTD Sbjct: 234 STAPIML---PTDLLFEYGSDQLAENARLSLMKLGYLITKNPNSRFIIEGHTDTI---GS 287 Query: 281 ARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN-----SANRRI 334 A N LS RA + L++S +S DRI + G R +P + NRR+ Sbjct: 288 AEFNLDLSQRRANAVVGWLIRSLRLSNDRIDAV-GMGESRPLARVNPNGTKEEQALNRRV 346 Query: 335 DILVED 340 +I V Sbjct: 347 EIKVRP 352 >gi|261417272|ref|YP_003250955.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373728|gb|ACX76473.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 294 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 10/192 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADNIV 212 ++ K ++I + S + K+ ++ K+ ++ + N + Sbjct: 104 AENWEKRAATNRTIEAIQEQIGEARSGKVSDLEAEKQAIKAQKDKLEASKNEAMDKLNAL 163 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGH 271 + + + T+ I + + +FD + + + L KI +L+ + +SI G+ Sbjct: 164 QSQMIQVTKDARGIIL--SMSDILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGN 221 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 TD + N LS RA + + L++ G++E R++ G + Sbjct: 222 TDNT---GSEEFNMTLSQQRAENVMKFLVEQGIAETRLTA-KGLGMTMPIADNSTKEGRQ 277 Query: 330 ANRRIDILVEDR 341 NRR+D+++ DR Sbjct: 278 KNRRVDLVITDR 289 >gi|162448390|ref|YP_001610757.1| putative ompA family protein [Sorangium cellulosum 'So ce 56'] gi|161158972|emb|CAN90277.1| putative ompA family protein [Sorangium cellulosum 'So ce 56'] Length = 617 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 22/266 (8%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P +R +D T + R ++ I ++ + + Sbjct: 354 PSDRDEDGFLDRVDACPDTPGIANDDPKKHGCPPPGDRDKDGITDDVDAC-PDEAGPANE 412 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA------MKRKKRLQDLAKKISST 202 + G D + I+ E+ P + A + ++D Sbjct: 413 DPKKHGCPPPPDRDGDGVIDAEDACPDIPGIRTSDPATNGCPGDRDGDTVRDDQDACPDE 472 Query: 203 LSGLVADNIVKG--VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 D G V T T I+I FD + + +L ++ VL Sbjct: 473 KGKPDPDPTKNGCPVAVRMTETEIVIL-----QQVQFDTGKATIKKVSDPLLDEVAGVLK 527 Query: 261 HSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 E I ++GHTD R N +LS RA S + L++ G+ +R++ G+ Sbjct: 528 EHPEITKIEVQGHTDP---RGGRAYNIKLSQARAESVTKALVQRGIEAERLAS-KGYGPD 583 Query: 319 RLKIASDP--MNSANRRIDILVEDRQ 342 +D NRR+ + +++ Sbjct: 584 VPIAENDTDEGRQKNRRVQFKILEKK 609 >gi|293194233|ref|ZP_06609955.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus F0309] gi|292819752|gb|EFF78765.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus F0309] Length = 348 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281 G +I++ D +FD S P+ L K+ VL + + I GHTD+ + Sbjct: 229 GTVITLEDS---ILFDFGESDIRPDAAHTLSKLATVLNDAKVPAAHIYGHTDSV---SDE 282 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333 N +LS DRA + L K G S I +G+ + ++ + NRR Sbjct: 283 AFNQKLSEDRANAVSAELKKDGASA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 340 Query: 334 IDILV 338 ++I + Sbjct: 341 VEIFI 345 >gi|319796493|ref|YP_004158133.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315598956|gb|ADU40022.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 219 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 18/156 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPET 248 +R+++ +++ + G GV T+ + ++I + FD + P Sbjct: 74 QRMENQKRQMEAATQGT-------GVAVTQTQNNELKLAI---PSDVSFDVGRANIKPNF 123 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL + L ++ + I GHTD++ I LS+DRA S L+ GV+ Sbjct: 124 APVLDQFASGLRNNPNAEVRIIGHTDSTGSDAINNP---LSVDRAASTRDYLVARGVNAA 180 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 +I G H SD + NRR++I V +R Sbjct: 181 -AFRIEGRGSHEPVADNNSDAGRAQNRRVEIYVGER 215 >gi|261414988|ref|YP_003248671.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371444|gb|ACX74189.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326246|gb|ADL25447.1| ompA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 756 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ L + L I +L + ++GHTD N +LS DRA+S Sbjct: 547 FEFDSAKLLKSSYPTLDDIIALLEKIPEVKLEVQGHTD---IVGTEDYNQKLSEDRAHSV 603 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 G++ DR+ I GF + D + NRR++++ Sbjct: 604 TDYFQSKGIAADRLRAI-GFGTRMPLADNVTDEGRAKNRRVELI 646 >gi|284048599|ref|YP_003398938.1| OmpA/MotB domain protein [Acidaminococcus fermentans DSM 20731] gi|283952820|gb|ADB47623.1| OmpA/MotB domain protein [Acidaminococcus fermentans DSM 20731] Length = 235 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 34/169 (20%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRN------TPMFDKSSSIPLPETIVVLQKIGEVL- 259 + + ++K V + G+ + I ++ + +F+ + + + K+ + L Sbjct: 56 LRNQLLKDVGKDLQAQGLQVRIDTKQGVLRIPESVLFESGEANIKEQGQAAVGKLSQSLL 115 Query: 260 --------AHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSE---- 306 + E + I GHTD P N NW LS RA + + LM++ V E Sbjct: 116 KTMTRPEYREALETVFIEGHTDNVPIHNEFFQSNWELSTQRAINTWN-LMRNDVPEFNWL 174 Query: 307 -----DRISKISGFAHHRLKIAS--DPM----NSANRRIDI--LVEDRQ 342 + I SG+A R + DP +ANRRIDI ++ Q Sbjct: 175 VNPRGEPIFSCSGYAETRPVRENGLDPNSEEGRAANRRIDIRFVMMPPQ 223 >gi|120613225|ref|YP_972903.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1] gi|120591689|gb|ABM35129.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 296 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 11/192 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 K + + ++ + + + + + + + + + ++ Sbjct: 108 KKAGADAERLRLTSEADRARMQAEANARSAQQAQLQAASAEQRAADNAARVRALEAQLRD 167 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T G+L+++ D +F + + + L K+ L + + I GHTD Sbjct: 168 IEAQQTERGLLVTLGD----VLFAFNKAELSAQAGPRLDKLANFLRQFPDRKLIIEGHTD 223 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331 + N LS RA + L++ GV+ DRI+ G+ + + N Sbjct: 224 SV---GGDAYNQSLSERRAQAVQSALVQRGVAPDRITA-RGYGKTYPVADNSSPEGRAMN 279 Query: 332 RRIDILVEDRQG 343 RR++I++ D +G Sbjct: 280 RRVEIVIADEKG 291 >gi|148260706|ref|YP_001234833.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|326403901|ref|YP_004283983.1| hypothetical protein ACMV_17540 [Acidiphilium multivorum AIU301] gi|146402387|gb|ABQ30914.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] gi|325050763|dbj|BAJ81101.1| hypothetical protein ACMV_17540 [Acidiphilium multivorum AIU301] Length = 342 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 104/327 (31%), Gaps = 20/327 (6%) Query: 28 NNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 N L W T+LM V+ + + A+ N L + + Sbjct: 10 NGLEIWPGYVDALSTLLMVTIFVLLVFVLAEAFLSVALSGR-NKTITALRSEIAQLSHVL 68 Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 + + + D + + + + + + + Sbjct: 69 ALQKSKTASLQDELASMASLMKAAKTREAALMAANAALTAKTATLGAAVTAAGGKLAGQV 128 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 ++++ + + ++ + L + + ++ DL ++++ L+ V Sbjct: 129 KLNAQELQTVSLLNQQIAALRLQLATIAAALDAAQKKDQEEHVQIADLGQRLNEALARKV 188 Query: 208 AD---------NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 +++ L + ++ + +F S+ + + K+ + Sbjct: 189 QSLEQYRSEFFGVLRKALADQKDIKVVGDRFVFESAVLFPSDSARLSAKGKAEIAKVAQA 248 Query: 259 LAHSTEVI--------SIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + I S+ G+ D DN+ LS RA S +L+ GV ++R+ Sbjct: 249 IEAIAPKIPDKINWVLSVTGYADKEAITGGPYKDNFDLSAARALSVLHLLIADGVPKNRV 308 Query: 310 SKISGFAHHRLKIASDPMN-SANRRID 335 A H + + P + + NRRI+ Sbjct: 309 VAAGFGADHPIATGNTPQDLAQNRRIE 335 >gi|306812301|ref|ZP_07446499.1| OmpA family membrane protein [Escherichia coli NC101] gi|305854339|gb|EFM54777.1| OmpA family membrane protein [Escherichia coli NC101] Length = 550 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 + I + + D E T + + + + + +FD + T V++ + Sbjct: 399 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|293410201|ref|ZP_06653777.1| flagellar motor protein MotB [Escherichia coli B354] gi|291470669|gb|EFF13153.1| flagellar motor protein MotB [Escherichia coli B354] Length = 58 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 7 KNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAI 65 KNQ + I++K++ A + GSWKI YADFMT +MAFFLVMW+I+ + I Sbjct: 2 KNQAHP-IIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQI 58 >gi|332879143|ref|ZP_08446844.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682943|gb|EGJ55839.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 454 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 E T+ + + T +FD S PE+ VL I VL S+ G+TD Sbjct: 334 EVTQE-VQTQLNSFAKTILFDVGKSTIRPESATVLNNIVNVLNKYKNSKFSVEGYTDT-- 390 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 N RLS DRAYS L+ G++ R+S GF + ++ NRR+ Sbjct: 391 -SGNKDKNQRLSEDRAYSVKAYLVDKGINPARLSA-KGFGPEKPIASNKTKKGRELNRRV 448 Query: 335 DI 336 +I Sbjct: 449 EI 450 >gi|45656521|ref|YP_000607.1| flagellar motor protein MotB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599756|gb|AAS69244.1| sodium translocating Bacterial Flagellar Motor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 275 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 21/176 (11%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E + + K L + + V VK G++IS++ F+ Sbjct: 78 ESLPSQTTGKALSKSKQLATELFKPEVEAGKVK---ITEDERGLIISLVSAD---YFNPG 131 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---------NIARDNWRLSLDR 291 S+I + L+K ++ + + GH DA+ +NW L+ R Sbjct: 132 SAILTDSIKIALRKASSLIKDLNRFVRVEGHCDANAVNPGVAPGKEERAYINNWDLAGAR 191 Query: 292 A-YSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSA-NRRIDILVEDRQ 342 A S ++ + +S F R + A P A NRRIDI++ + Sbjct: 192 AINSTDYIINVEKLDPSWFQAVS-FGAFRPLVVEYAGTPEAKAYNRRIDIVIMTEK 246 Score = 44.1 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + N+ + + Y D +T+L+ FF++++ T+ + I F Sbjct: 3 KSKCPECIQNIPEYMLTYGDMVTLLLCFFIMLYTTGKTNAIEMQIILSAFKT-------- 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 + G FD + ++ ++I+ ++ + Sbjct: 55 TTGFFDGGQTLSKGRLEEMGMNIESLPSQTTG 86 >gi|307718829|ref|YP_003874361.1| OmpA family protein [Spirochaeta thermophila DSM 6192] gi|306532554|gb|ADN02088.1| OmpA family protein [Spirochaeta thermophila DSM 6192] Length = 414 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 11/127 (8%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E GI I++ F ++ LP L + E L + I + GHT Sbjct: 295 VEEVPEGIKITLRTLH----FLPDQAVLLPGEEEKLDLLAEALNAIPDRTILVVGHTADV 350 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 LS RA + + L+K GV +R+ G +D NRR Sbjct: 351 GKPRGQM---ALSEARAKTIVEELVKRGVKPERLI-YLGKGGTEPVAPNDTEEGRRLNRR 406 Query: 334 IDILVED 340 ++I V + Sbjct: 407 VEIFVLE 413 >gi|187929665|ref|YP_001900152.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J] gi|309781567|ref|ZP_07676302.1| inner membrane lipoprotein YiaD [Ralstonia sp. 5_7_47FAA] gi|187726555|gb|ACD27720.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] gi|308919672|gb|EFP65334.1| inner membrane lipoprotein YiaD [Ralstonia sp. 5_7_47FAA] Length = 209 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 11/144 (7%) Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S L D G G + ++I + FD S++ P L + + L Sbjct: 73 SKLAGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAQTLTQH 129 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E ++ GHTD++ N LS RA S L GV+ +R+S G ++ Sbjct: 130 PELAANVVGHTDST---GNPNYNLTLSQKRAQSVASYLTDRGVARNRLSA-EGRGQNQPV 185 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 A++ + NRR++I ++ QG Sbjct: 186 ADNATEAGRAQNRRVEIYLKPIQG 209 >gi|160901602|ref|YP_001567183.1| OmpA/MotB domain-containing protein [Petrotoga mobilis SJ95] gi|160359246|gb|ABX30860.1| OmpA/MotB domain protein [Petrotoga mobilis SJ95] Length = 290 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 10/123 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 I L ++ D KG + E T G +IS+ D F S+ E +L +IG Sbjct: 80 IRQELLKIIEDEKYKGKITIEETDKGTIISMRDI---AFFRPGSAELTAEAKDLLYRIGT 136 Query: 258 V-LAHSTEVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + L H++ I + G TD P ++ NW LS RA S + R+ + Sbjct: 137 IILEHTSNAIEVYGFTDDQPVLPSSVYPSNWHLSAARAASVVNFFTIE-LKNRRL--VEK 193 Query: 315 FAH 317 A Sbjct: 194 MAE 196 Score = 39.5 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 5/134 (3%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA----IEQYFNPFGKNLM 77 W ++D T+L+ F+ ++ + + ++ F ++ Sbjct: 3 RKKREKTGDAKWMQTFSDMTTLLLTMFIALFSMATISPGKFQQAVVSLQNVFEGQPIGVL 62 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + I DE + L I E K + I T++ + F ++ Sbjct: 63 VGGRSISDEPLITSNPGIRQELLKIIED-EKYKGKITIEETDKGTIISMRDIAFFRPGSA 121 Query: 138 QQSEHCKNSLTRDS 151 + + K+ L R Sbjct: 122 ELTAEAKDLLYRIG 135 >gi|84684107|ref|ZP_01012009.1| OmpA/MotB domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84667860|gb|EAQ14328.1| OmpA/MotB domain protein [Rhodobacterales bacterium HTCC2654] Length = 481 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI----SIRGHTDASPFRNIARDNWRLSLDRA 292 F S+ ++ ++ + +L H T+ I +I GHTD+ +N+RLS+ RA Sbjct: 376 FVTGSAELDTASMSIINDMAGLLLHCTDKIGMRVTIGGHTDSQ---GDDNENYRLSVARA 432 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333 + L+ GV R+ + GF +D +ANRR Sbjct: 433 NAVRDALVARGVPAGRM-QALGFGETEPIADNDTEEGRAANRR 474 >gi|255534904|ref|YP_003095275.1| OmpA/MotB domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341100|gb|ACU07213.1| OmpA/MotB domain protein [Flavobacteriaceae bacterium 3519-10] Length = 230 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 18/156 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + AK+I TL G E GI +++ + FD SS Sbjct: 80 RNMDKQAKEIKETLPGA---------EVERVGEGIRVTMKENMVNFGFD--SSELTSAAK 128 Query: 250 VVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ +VL + I+I GHTD+ + N LS RA + L+ GV+ R Sbjct: 129 TNLDKLAQVLKNNMDTNINIYGHTDS---KGTDAYNLSLSERRAAAVRSYLISQGVASSR 185 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G ++D + NRR++ + + Sbjct: 186 ML-TMGVGEKEPVASNDTDAGRAENRRVEFAITANE 220 >gi|92115424|ref|YP_575352.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91798514|gb|ABE60653.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 226 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 71/210 (33%), Gaps = 17/210 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + QQ +H K + L + + + Sbjct: 26 QTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGSTSRRDRALIGAAAGAAIGGGVGAYMD 85 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +K+ L G R G I + ++ FD SS L Sbjct: 86 AQEEKLRRDLDGT---------GIGVDRQGDNIVLN-MPSSVTFDVDSSALKTPARQALN 135 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 V+ + I++ G+TD++ A N RLS RA + L + G++ +RI+ + Sbjct: 136 DATAVMREYPKTRINVAGYTDST---GSADYNQRLSERRAQAVADYLGQGGIAANRINTV 192 Query: 313 SGFAHHRLKIASDPM--NSANRRIDILVED 340 G+ + ++D + NRR++I + Sbjct: 193 -GYGERQPVASNDTESGRAQNRRVEITLTP 221 >gi|262041860|ref|ZP_06015044.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040765|gb|EEW41852.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 565 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 236 MFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S P + +L + + +I + GHTD+ R N +LSL RA + Sbjct: 435 LFDTGKSALKPGSTKLLVNSLLGIKVKPGWLIVVAGHTDSI---GNDRSNQQLSLKRAEA 491 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + +G + + G+ R +++ + NRR++I + ++ Sbjct: 492 VRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQK 541 >gi|94311700|ref|YP_584910.1| OmpA/MotB [Cupriavidus metallidurans CH34] gi|93355552|gb|ABF09641.1| outer membrane protein, OmpA/MotB family(modular protein) [Cupriavidus metallidurans CH34] Length = 294 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 16/133 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 G I +Q + + FD SS P VL ++ + LA H ++ GHT Sbjct: 166 GTGTQITEQPDGSLKVNIPSQVTFDTDSSTIKPSFRNVLDQVAQTLAQHQDVSANVVGHT 225 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D++ N N +LS RA S L GV+ R+S G + +++ + Sbjct: 226 DST--GNPQY-NMQLSQRRAQSVAGYLGDRGVARTRLSA-EGRGQTQPVADNSTEAGRAQ 281 Query: 331 NRRIDILVEDRQG 343 NRR++I ++ G Sbjct: 282 NRRVEIFLKPISG 294 >gi|91212188|ref|YP_542174.1| hypothetical protein UTI89_C3194 [Escherichia coli UTI89] gi|218559806|ref|YP_002392719.1| hypothetical protein ECS88_3087 [Escherichia coli S88] gi|91073762|gb|ABE08643.1| hypothetical protein UTI89_C3194 [Escherichia coli UTI89] gi|218366575|emb|CAR04328.1| conserved hypothetical protein; putative membrane protein [Escherichia coli S88] gi|294493880|gb|ADE92636.1| OmpA domain protein [Escherichia coli IHE3034] gi|307625612|gb|ADN69916.1| hypothetical protein UM146_02475 [Escherichia coli UM146] gi|315289326|gb|EFU48721.1| OmpA family protein [Escherichia coli MS 110-3] gi|323951748|gb|EGB47623.1| OmpA family protein [Escherichia coli H252] gi|323957271|gb|EGB52994.1| OmpA family protein [Escherichia coli H263] Length = 550 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|119476926|ref|ZP_01617207.1| ompA family protein [marine gamma proteobacterium HTCC2143] gi|119449733|gb|EAW30970.1| ompA family protein [marine gamma proteobacterium HTCC2143] Length = 213 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G R G I +I + F+ S + VL+ +G VLA Sbjct: 76 VQESALREQLQGSGVRVVREGDNIRLI-MPGSITFETDSYVLRRSFSPVLESVGLVLAKY 134 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E ++ + GHTD + + N RLS DRA S LM GV +R+ I G Sbjct: 135 NETMMRVTGHTDNT---GGEQYNQRLSEDRAQSVASNLMSQGVDGNRLY-IQGSGETMPI 190 Query: 322 IASDP--MNSANRRIDILVED 340 ++ ++NRR+++ + Sbjct: 191 ADNNTSSGRASNRRVELYILP 211 >gi|108761291|ref|YP_633197.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108465171|gb|ABF90356.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 640 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR 282 I +++ F+ + I + + +L + +L E + + GHTD R Sbjct: 511 RIQLLE---AVYFENNKDIIIARSNKLLDTVANILIAHPEVEKVRVEGHTDN---RGNPD 564 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID--IL- 337 N LS RA + + L+ GV+ +R+ GF + ++ + NRR++ I+ Sbjct: 565 YNLDLSQRRADAVVRYLVSKGVARERLDA-KGFGPTQPIADNNTTQGRAKNRRVEFKIVG 623 Query: 338 ----VEDRQG 343 V+ +QG Sbjct: 624 DAEGVQTQQG 633 >gi|27366989|ref|NP_762516.1| outer membrane protein A [Vibrio vulnificus CMCP6] gi|37676767|ref|NP_937163.1| outer membrane protein [Vibrio vulnificus YJ016] gi|27358557|gb|AAO07506.1| Outer membrane protein A precursor [Vibrio vulnificus CMCP6] gi|37201310|dbj|BAC97133.1| outer membrane protein [Vibrio vulnificus YJ016] Length = 357 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q N +F SS L + EVL + I GHTD++ + N R+S Sbjct: 238 QYNQELFATGSSKLSAGGKQALTPLAEVLIKYPDAEAEIVGHTDST---GSEKVNQRISE 294 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA + L++ GV +++ K+ G + ++ + NRR+++ + Sbjct: 295 QRAQAVADYLVEQGVKAEQL-KVRGAGESQPIASNKTAEGRAQNRRVEVTI 344 >gi|288959500|ref|YP_003449841.1| ompA/MotB domain protein [Azospirillum sp. B510] gi|288911808|dbj|BAI73297.1| ompA/MotB domain protein [Azospirillum sp. B510] Length = 416 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 10/163 (6%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 P+ +++ L +I+ L+ + V+ + E ++I I M Sbjct: 256 PIEIARLVPPPPPTAGPALIARITGQLAPEIRTGAVEVLAGE--DGALVIRI---PAAAM 310 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSA 295 F +++++G+ LA + + HTD P L+ RA + Sbjct: 311 FATGGDAVKARHRAIVERVGQTLAAEPGGVLVVAHTDDQSPTTGRLPTGQALTDARAEAV 370 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 ++L +S + R+S G +D ANRRIDI Sbjct: 371 RRLLERS-IPPARLSA-EGHGDQEPVALNDTPAGRDANRRIDI 411 >gi|205354747|ref|YP_002228548.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858882|ref|YP_002245533.1| outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205274528|emb|CAR39567.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710685|emb|CAR35045.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248795|emb|CBG26648.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160182|emb|CBW19704.1| putative outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 209 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 72 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 130 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 131 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANPI 186 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 187 ASNSTAEGKAQNRRVEITLSPLQ 209 >gi|117625045|ref|YP_854033.1| putative outer membrane protein [Escherichia coli APEC O1] gi|115514169|gb|ABJ02244.1| putative outer membrane protein [Escherichia coli APEC O1] Length = 537 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 386 ERIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 444 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 445 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 500 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 501 LGESQPAATNDTPQGRAVNRRVEISLVPR 529 >gi|326319300|ref|YP_004236972.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376136|gb|ADX48405.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 296 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 11/192 (5%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 K + + ++ + + + + + + + + + ++ Sbjct: 108 KKAGADAERLRLTSEADRARMQAEANARSAQQAQLQAASAEQRAADNAARVRALEAQLRD 167 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T G+L+++ D +F + + + L K+ L + + I GHTD Sbjct: 168 IEAQQTERGLLVTLGD----VLFAFNKAELSAQAGPRLDKLANFLRQFPDRKLIIEGHTD 223 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331 + N LS RA + L++ GV+ DRI+ G+ + + N Sbjct: 224 SV---GGDAYNQSLSERRAQAVQSALVQRGVAPDRITA-RGYGKTYPVADNSSPEGRAMN 279 Query: 332 RRIDILVEDRQG 343 RR++I++ D +G Sbjct: 280 RRVEIVIADDKG 291 >gi|189179676|dbj|BAG39457.1| outer membrane protein [Gluconacetobacter intermedius] Length = 373 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + + ++ + + H T I + G+TD A P + N LS+ R Sbjct: 265 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTSAHPGPRGEKYNLGLSMRR 324 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV + I + G+ + + D NRR++I++ Sbjct: 325 ADSVKAELIRDGVPANAID-VHGYGEAHPLVPTGPDTREPQNRRVEIIL 372 >gi|186476941|ref|YP_001858411.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184193400|gb|ACC71365.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 217 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272 G I +Q + + FD +S P VL ++ + L + EV++ + GHT Sbjct: 86 GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLSQVAQTLNQNPEVVAQVVGHT 145 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D++ N LS++RA S Q L GV+ R+S +G ++ ++ + Sbjct: 146 DST---GQPAYNQTLSVNRAQSVAQQLATDGVAPQRLSA-TGMGANQPIADNNTETGRAQ 201 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 202 NRRVEIYL 209 >gi|90019934|ref|YP_525761.1| hypothetical protein Sde_0285 [Saccharophagus degradans 2-40] gi|89949534|gb|ABD79549.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 364 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE+ L ++ +L I I GHTD ++ N +LS RA S Sbjct: 199 FDSGKSALKPESDSELAELATILNEHPALKIKIVGHTDNV---GDSKANLKLSAARAKSV 255 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 L+K+ V+ +S G + + D + NRR++I+ + + Sbjct: 256 LNALVKNFNVNAANLSA-EGQGETQPVDTNSTDMGRAKNRRVEIIAINPE 304 >gi|222081943|ref|YP_002541308.1| OmpA/MotB domain protein [Agrobacterium radiobacter K84] gi|221726622|gb|ACM29711.1| OmpA/MotB domain protein [Agrobacterium radiobacter K84] Length = 494 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P + VL I + + + GHTD+ N LS RA + Sbjct: 393 FDTGKARISPASSGVLDTIVATIGRCPGNAVEVSGHTDS---SGDEAANVALSEQRAKAV 449 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 L +GV R++ + G R ++D + NRRI+ V+ Sbjct: 450 VTYLTDAGVPASRLTAV-GLGSSRPVASNDTDEGKALNRRIEFSVK 494 >gi|167032120|ref|YP_001667351.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166858608|gb|ABY97015.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 263 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + QS T+D++ + +++ K+ Sbjct: 21 SHDPNANLEAARTNFSSLQSDPQSSKVAALETKDAQDWLNKADKAYMDREDQKQVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRIEVAKQTIALRTAEGELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + K+ + L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSNAYPNITKLAQFLQENPERKVIVEGYTDSV---GSANYNQS 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 LS RA S L+++GV RI G+ + + + NRR+++ + + Sbjct: 194 LSERRAGSVRMALVRAGVDPARIVS-QGYGKEYPVADNGSNSGRAQNRRVEVTISN 248 >gi|120555732|ref|YP_960083.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120325581|gb|ABM19896.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 236 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++G R G I +I FD S L+ + VL + +I I Sbjct: 106 QKLEGTGVRVVRNGDQIDLI-MPGNITFDTDQSTIRSGFTGTLESVALVLKEFDKTIIQI 164 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTD++ N LS RA S L+ G+ R ++ +G+ ++D Sbjct: 165 EGHTDST---GSDSYNQLLSERRASSVRDFLLNQGIEPRR-TRATGYGERYPIASNDTAA 220 Query: 329 SA--NRRIDILVEDRQ 342 NRR+++ + Q Sbjct: 221 GREQNRRVELTLVPMQ 236 >gi|237654130|ref|YP_002890444.1| OmpA/MotB domain protein [Thauera sp. MZ1T] gi|237625377|gb|ACR02067.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 222 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + +Q ++ +G + +TT + + I + FD P Sbjct: 78 QNMQKQRAEMEQATAGTGIG------ISQTTDNQLKVDIPADVS---FDVGRHAIKPNMR 128 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL ++ L ++I GHTD++ N LS++RA + L++ GVS R Sbjct: 129 PVLDRLASTLNQHPVTTVTIIGHTDST---GSDAVNDPLSINRAAATRDYLVQRGVSAQR 185 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I + G + + + NRR++I + Sbjct: 186 I-AVDGRGSRQPVADNSTASGRAMNRRVEIFI 216 >gi|238024317|ref|YP_002908549.1| hypothetical protein bglu_2g09050 [Burkholderia glumae BGR1] gi|237878982|gb|ACR31314.1| OmpA/MotB [Burkholderia glumae BGR1] Length = 236 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 24/178 (13%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232 + E + + + + L + TL +A + G ++++D R Sbjct: 39 GMQLEASSRLADEIKQRQLETQRRKTLEQALAGPLAAG----------RVTLVDGRIGIS 88 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFRNI---ARDNW 285 +F +S P+ +L+ + L+ +++ + G D DNW Sbjct: 89 GNVLFAVNSDQLQPQGRALLRSLAGPLSAYLRDRDQILMVSGFADDQQVHAGNARFADNW 148 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 LS +RA + + +++GV + + F + A + + NRR++I R Sbjct: 149 ELSAERALTVTRAFIEAGVPAGSVFAAA-FGSEQPVSSNADEAGRAKNRRVEIAAVPR 205 >gi|310822654|ref|YP_003955012.1| OmpA domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395726|gb|ADO73185.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] Length = 653 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 82/234 (35%), Gaps = 17/234 (7%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 V + + + + + + +Q+ +K + + K + Sbjct: 434 VPGQPQTVEVALESMAQPATLSFSTTAQKKPVAATLRLSGPQKQELATSAAAPTKLVLPP 493 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +Y + ++ + + + + A+ + L + V + +L + Sbjct: 494 GHYLVDVMAPGYLAQTREVQVAEGTAQSFAFDLKPAPKKKL---VTVADNKLALLQQVQ- 549 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 F ++ + +L ++ +V+ + + + + HTD N +LS Sbjct: 550 ------FADGKAVIQANSQPLLAQVVDVIVRNNIQRVRVEAHTDNQ---GNPAANLKLSQ 600 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +RA + L +SG+ R+ + G+ R + NRR++ ++ ++ Sbjct: 601 ERAQAVATFLAQSGLDAARME-VQGYGDARPIAPNLTPRGKELNRRVEFIILEQ 653 >gi|262194964|ref|YP_003266173.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262078311|gb|ACY14280.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 623 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 95/275 (34%), Gaps = 22/275 (8%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G D P+ + + E N + + G + R + + Q Sbjct: 354 DGFADSDGCPDLDNDGDGIPDL-EDGAPNEPEDRDGFEDGDGVPDRDNDGDGINDD--QD 410 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK----KRLQDLA 196 + T++ + D C ++ P E + + + + + Sbjct: 411 ACPLKAETQNGFQDDDGCPDVADSDGDGLADDVDACPEQAEDMDSFQDEDGCPEENDRDG 470 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTG--IL---ISIIDQRNTPMFDKSSSIPLPETIVV 251 + + T+ G + I II+ F + + LP + V Sbjct: 471 DTVLDRQDTCPDEPGKPEFEGCPTKPGAALRDGSIEIIE---KVYFPNNQARILPRSFPV 527 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+++ VL + + + + GHTD R N +LS RA S L++ G++ +R+S Sbjct: 528 LKEVARVLNNHPDIELRVEGHTDD---RGNDTYNRKLSQRRADSVVAFLVEQGIAAERLS 584 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 GF R AS NRR++ ++ + G Sbjct: 585 A-KGFGEERPIADNASAQGRDQNRRVEFVITNGDG 618 >gi|315298823|gb|EFU58077.1| OmpA family protein [Escherichia coli MS 16-3] Length = 550 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 + I + + D E T + + + + + +FD + T V++ + Sbjct: 399 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|258621036|ref|ZP_05716070.1| outer membrane protein OmpA [Vibrio mimicus VM573] gi|262166295|ref|ZP_06034032.1| outer membrane protein A precursor [Vibrio mimicus VM223] gi|258586424|gb|EEW11139.1| outer membrane protein OmpA [Vibrio mimicus VM573] gi|262026011|gb|EEY44679.1| outer membrane protein A precursor [Vibrio mimicus VM223] Length = 322 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + + + + +V+ V T T ++ F +S+ P L K+ Sbjct: 179 EQRPAEPAPVAEEPVVEKVAVTKTFT------FQHLDSGTFANNSAELKPSMETKLDKLV 232 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L + + + GHTD++ N +LS RA + + L GV RI+ G Sbjct: 233 GYLNQYPQAKVEVVGHTDSN---GSEAYNQKLSEKRAQAVAKALEAQGVDAARITA-KGQ 288 Query: 316 AHHRLKIASDPMNSA--NRRIDILV 338 ++ NRR+++++ Sbjct: 289 GESNPIASNATAEGREKNRRVELVI 313 >gi|77165990|ref|YP_344515.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|76884304|gb|ABA58985.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] Length = 319 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P +L K+ E + + I+I GHTD++ A N RLS RA +A Sbjct: 215 FGFDSAKLSPNAHTILDKVVENMRTYPDLEITIAGHTDST---GNADYNQRLSQLRAEAA 271 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L G+ R+ I G+ R ++ + NRR+++ Sbjct: 272 MNYLASKGIDPSRMEAI-GYGEERPIASNSTKEGRAKNRRVEL 313 >gi|120555939|ref|YP_960290.1| hypothetical protein Maqu_3029 [Marinobacter aquaeolei VT8] gi|120325788|gb|ABM20103.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 217 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 15/173 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + E ++ + ++ ++ L + D + KG+ T I I + Sbjct: 38 GIQLELSQSLAEEIEKREAEEQRRMALEQALEDPLTKGL---VTFRDGRIGIS---GNVL 91 Query: 237 FDKSSSIPLPETIVVLQKIGEVLA----HSTEVISIRGHTDASPFR--NIARDNWRLSLD 290 F+ +S E VL+ + L E++ + G TD P N +DNW LS Sbjct: 92 FELNSDQLQAEGEEVLESLIRPLQAYLEQHDELLMVSGFTDDLPMHPGNRYQDNWGLSAQ 151 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 RA + + L + G+ DR+ + F H + + + NRR++I R Sbjct: 152 RALTVTRTLTELGLPNDRVFAAA-FGPHHPAVPNVDAESRAQNRRVEISTVPR 203 >gi|110636612|ref|YP_676819.1| peptidoglycan-associated outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110279293|gb|ABG57479.1| peptidoglycan-associated outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 239 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 13/129 (10%) Query: 221 RTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 I I +I FD + PE + + L + I I GHTD Sbjct: 114 DQEIRIKLIRDYARIFTLDNVYFDVNKWNIKPECEPAIDNLYNSLTLNPNMHIEIAGHTD 173 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNS-AN 331 + A DN LS RA + L++ G+ R+ + G+ ++ +D P N N Sbjct: 174 SD---GDAHDNLVLSQRRAEAVMNHLIQKGLDPKRV-QAKGYGEYKPIAPNDSPQNKYRN 229 Query: 332 RRIDILVED 340 RR ++ V D Sbjct: 230 RRTEVRVLD 238 >gi|317494692|ref|ZP_07953104.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917294|gb|EFV38641.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 219 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + ++G TR G I I++ N FD SSS P L + VL + +++ Sbjct: 90 DKMRGTGVSVTRQGDNI-ILNMPNNVTFDSSSSTLKPAGANTLTGVAMVLKEYPKTAVNV 148 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 G+TD++ N RLS RA S L+ GV R+ + G ++ Sbjct: 149 VGYTDST---GSQDLNMRLSQQRADSVASALIVQGVEASRV-RTQGMGPANPIASNSTAE 204 Query: 329 --SANRRIDILV 338 + NRR++I + Sbjct: 205 GKAQNRRVEITL 216 >gi|238751686|ref|ZP_04613175.1| hypothetical protein yrohd0001_18130 [Yersinia rohdei ATCC 43380] gi|238710096|gb|EEQ02325.1| hypothetical protein yrohd0001_18130 [Yersinia rohdei ATCC 43380] Length = 575 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S T V++ + + A +I + GHTD ++ N LSL RA Sbjct: 443 SLFDVGQSTLKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGESKSNQILSLKRAE 499 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + +G + + G+ R +D + NRR++I + + Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGQSRPLKPNDTETGRALNRRVEISLVPQ 549 >gi|254487455|ref|ZP_05100660.1| OmpA family domain protein [Roseobacter sp. GAI101] gi|214044324|gb|EEB84962.1| OmpA family domain protein [Roseobacter sp. GAI101] Length = 221 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 22/217 (10%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 I N ++ +L S L + + Sbjct: 22 EPGPIGGNPNDPNAKTRNGALIGAGAGAVIGALSKGDGNRAEGALAGALAGGAVGAGVGY 81 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 ++ DL +++ S V+ T +++++ +F S+ Sbjct: 82 TLDQQEADLRRQLDS------------NVIITNTGDRLIVTL---PQDILFATDSTTVQS 126 Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 L + + + + + GHTD+ A N +LS RA + VL+ +GV Sbjct: 127 GMQSDLAALARNVNVYSNSTLQVIGHTDSV---GDASYNQQLSEGRANAVANVLIGNGVP 183 Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 +RI + G + + + + NRR++I++ Sbjct: 184 RNRIQAV-GRGESQPVASNLNASGKAQNRRVEIVILP 219 >gi|182412224|ref|YP_001817290.1| OmpA/MotB domain-containing protein [Opitutus terrae PB90-1] gi|177839438|gb|ACB73690.1| OmpA/MotB domain protein [Opitutus terrae PB90-1] Length = 266 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 3/176 (1%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV--KGVLFETTRTG 223 N + + P E+ A + + L S L D + K + + T G Sbjct: 65 PSNSQSSRSQGPDKGERQRAKHNQMEMAFLNSVASDFYKTLRLDQDITDKPIEIQVTADG 124 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIAR 282 + +++ D+ P+F +++ V+Q + + ++I GHT A Sbjct: 125 LRLTVFDRARKPVFVGNTAEFTEWGRFVMQNLSWTVDRHKFRVTIDGHTKAQLDLGPGEY 184 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 W LS DRA +A + L+ V I +++G+A R P +N+RI + + Sbjct: 185 TPWELSADRANAARRALVHYAVDPALIDRVTGYADTRPVEGESPEAESNQRITLSL 240 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + G+WK+ YADF+T +MA F+V+W I+A D A QYF + M A+ Sbjct: 2 ARKKAAAGHGGAWKVAYADFVTAMMALFMVLW-ISAQDQKILIATSQYFQNPFQAPMLAA 60 Query: 81 KGIFDEQNPPERS 93 G+ + RS Sbjct: 61 SGVLPSNSQSSRS 73 >gi|83746716|ref|ZP_00943765.1| Hypothetical Protein RRSL_03628 [Ralstonia solanacearum UW551] gi|207721381|ref|YP_002251822.1| bacterial outer membrane protein [Ralstonia solanacearum MolK2] gi|207742640|ref|YP_002259032.1| bacterial outer membrane protein [Ralstonia solanacearum IPO1609] gi|83726669|gb|EAP73798.1| Hypothetical Protein RRSL_03628 [Ralstonia solanacearum UW551] gi|206586540|emb|CAQ17127.1| bacterial outer membrane protein [Ralstonia solanacearum MolK2] gi|206594034|emb|CAQ60961.1| bacterial outer membrane protein [Ralstonia solanacearum IPO1609] Length = 209 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%) Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S L D G G + ++I + FD S++ P L + E L Sbjct: 73 SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAMIKPSFRGPLDSVAETLTQH 129 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E S+ GHTD++ N LS RA S L GV+ +R++ G + Sbjct: 130 PELAASVVGHTDST---GNPNYNMSLSQRRAQSVTSYLTDRGVARNRLTA-EGRGQTQPV 185 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 A++ + NRR++I ++ QG Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209 >gi|255622212|ref|XP_002540262.1| conserved hypothetical protein [Ricinus communis] gi|223497476|gb|EEF22121.1| conserved hypothetical protein [Ricinus communis] Length = 160 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F +S+I LPE+ L + +V+ + I GHTD N LS RA Sbjct: 49 RILFQANSAIILPESYADLDIVYDVVKEWGNDKVEIAGHTDKRNTSKEKY-NLVLSEKRA 107 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + L+K G+ R+ + G+ + +DP N ANRR++++ Sbjct: 108 KAVADYLVKKGMDAQRLV-VKGYGFSQPIAENDPVSGNDANRRVEVI 153 >gi|118474477|ref|YP_891591.1| outer membrane fibronectin-binding protein [Campylobacter fetus subsp. fetus 82-40] gi|118413703|gb|ABK82123.1| outer membrane fibronectin-binding protein [Campylobacter fetus subsp. fetus 82-40] Length = 345 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 18/157 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILIS------IIDQRNTPMFDKSS 241 ++ + + + D GVL T G+++ +I F S Sbjct: 187 EEQPAPAPTKIVPAIGDEDGDGVLDNVDRCPGTPKGVVVDEYGCEKVIRLSLKANFAFDS 246 Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + PE ++++ +V+ + + + GHTD++ N +LS+ RA + L Sbjct: 247 AKVTPEYEAKIKEVADVMVANPEYRVILEGHTDST---GPEDYNKKLSVKRADAVAATLE 303 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 K GVS+++I+ + GF + ++ + NRR++ Sbjct: 304 KMGVSKNKITTV-GFGEEQPIASNATKEGRAENRRVE 339 >gi|319957287|ref|YP_004168550.1| ompa/motb domain protein [Nitratifractor salsuginis DSM 16511] gi|319419691|gb|ADV46801.1| OmpA/MotB domain protein [Nitratifractor salsuginis DSM 16511] Length = 351 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 G++ T G ++++ +FD + I PE L + + + I + G+T Sbjct: 228 GIIVRKTSEGSMLTV---PEKVLFDFNKFILKPEAKKALDVVADYIRSHPARQIVVTGYT 284 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D A N RLSL RA S LM G + ++ KI G A++ + Sbjct: 285 DN--IGTDAY-NLRLSLQRAQSVADYLMDCGKVDPKLFKIVGKGKANPIADNATEEGRAK 341 Query: 331 NRRIDI 336 NRR++I Sbjct: 342 NRRVEI 347 >gi|167035287|ref|YP_001670518.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861775|gb|ABZ00183.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 239 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 7/116 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDN 284 + I+D MF S+ P LQ + ++ + + + + GHTD N Sbjct: 127 VIILDDNGAVMFAFDSADLTPAAQQRLQGLVAKLDSPTVAKVRVIGHTDNV---GSDSYN 183 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 LS RA S + L+ G+ +++ G ++ + NRR+++ + Sbjct: 184 QALSERRASSVAEYLIGQGLEAGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 238 >gi|300690749|ref|YP_003751744.1| outer membrane lipoprotein [Ralstonia solanacearum PSI07] gi|299077809|emb|CBJ50447.1| putative outer membrane lipoprotein [Ralstonia solanacearum PSI07] Length = 209 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 11/144 (7%) Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S L D G G + ++I + FD S++ P L + E L Sbjct: 73 SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAVIKPSFRGPLDSVAETLTQH 129 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E ++ GHTD++ N LS RA S L GV+ +R++ G + Sbjct: 130 PELAANVVGHTDST---GNPNYNMSLSQRRAQSVTSYLTDRGVARNRLTA-EGRGQTQPV 185 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 A++ S NRR++I ++ QG Sbjct: 186 GDNATEAGRSQNRRVEIYLKPIQG 209 >gi|59713685|ref|YP_206460.1| outer membrane protein [Vibrio fischeri ES114] gi|59481933|gb|AAW87572.1| outer membrane protein [Vibrio fischeri ES114] Length = 208 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 17/198 (8%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +SL + K K+ D E + + L + D ++++ L+ Sbjct: 21 SSLLDIAPKTKEDAPFPDFENPETAPVEE-METSEMTRALTGPNGELKDDDMRQVAQQLT 79 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + + ++ISI ++ + F + + P +L K+ V+A E Sbjct: 80 NMGIQ------YHKVGNDQLVISIQEKVH---FSSAKAELTPLARSLLNKLIVVMASKPE 130 Query: 265 VISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD N LS R+ + L+ + ++ ++ GF + Sbjct: 131 LALVLDGHTD---VTGDPIKNQNLSEQRSNEVRRYLLANKLNASQLYS-RGFGEYLPLCD 186 Query: 324 SDPMNSA--NRRIDILVE 339 +D + NRR++I + Sbjct: 187 NDTILGRKCNRRVEITIL 204 >gi|197336770|ref|YP_002158098.1| outer membrane protein [Vibrio fischeri MJ11] gi|197314022|gb|ACH63471.1| outer membrane protein [Vibrio fischeri MJ11] Length = 208 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 17/198 (8%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +SL + K K+ D E + + L + D ++++ L+ Sbjct: 21 SSLLDTAPKTKEDAPFPDFENPETAPVEE-METSEMTRALTGPNGELKDDDMRQVAQQLT 79 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 + + ++ISI ++ + F + + P +L K+ V++ E Sbjct: 80 NMGIQ------YHKVGNDQLVISIQEKVH---FSSAKAELTPLARSLLNKLIVVMSSKPE 130 Query: 265 VISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD N LS R+ + L+ + ++ ++ GF + Sbjct: 131 LALVLDGHTD---VTGDPIKNQNLSEQRSNEVRRYLLANKLNASQLYS-RGFGEYLPLCD 186 Query: 324 SDPMNSA--NRRIDILVE 339 +D + NRR++I + Sbjct: 187 NDTILGRKCNRRVEITIL 204 >gi|254428835|ref|ZP_05042542.1| Rickettsia 17 kDa surface antigen family [Alcanivorax sp. DG881] gi|196195004|gb|EDX89963.1| Rickettsia 17 kDa surface antigen family [Alcanivorax sp. DG881] Length = 221 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR G I I++ F S+ VL + EVL Sbjct: 83 VQEAKLRQKLEGAGVSVTRDGENI-ILNMPGNLTFATDSTNVKSSFDPVLDAVSEVLNEY 141 Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +I + GHTD++ R N LS RA + L GV + R+ + GF + Sbjct: 142 KSTMIQVAGHTDST---GGDRYNLLLSQQRAQAVSNKLSGYGVEQVRLDTV-GFGETQPI 197 Query: 322 IASDPMNSA--NRRIDILVED 340 +++ + NRR+++ + Sbjct: 198 ASNNTASGREQNRRVELTLLP 218 >gi|238792655|ref|ZP_04636287.1| hypothetical protein yinte0001_22390 [Yersinia intermedia ATCC 29909] gi|238728011|gb|EEQ19533.1| hypothetical protein yinte0001_22390 [Yersinia intermedia ATCC 29909] Length = 575 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S+ T V++ + + A +I + GHTD + N LSL RA Sbjct: 443 SLFDVGQSMLKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDDKSNQALSLKRAE 499 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + +G + + G+ R ++D + NRR++I + + Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGQSRPLKSNDTEAGRALNRRVEISLVPQ 549 >gi|238024505|ref|YP_002908737.1| outer membrane protein [Burkholderia glumae BGR1] gi|237879170|gb|ACR31502.1| Outer membrane protein [Burkholderia glumae BGR1] Length = 602 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 ++ + +FD S P T ++ + + AH + I + G+TD N + Sbjct: 481 VVTLDSMSLFDSGRSQLKPGSTRAMVGALEMIKAHPDKRILVAGYTDN---SGNPNRNLK 537 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L+++ G+ + I G+ R ++D + NRR++I + Sbjct: 538 LSTARARAVRDWLIEASGIPTTQF-AIQGYGDTRPIASNDTPEGRARNRRVEITLVP 593 >gi|49079216|gb|AAT49867.1| PA1041 [synthetic construct] Length = 211 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F SS L I E L ++ +SI GHTD+ N +LS RA + Sbjct: 105 FAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDSV---GSDAYNQKLSERRANA 161 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L+ +GV I + G + + + NRR++IL++ R+G Sbjct: 162 VANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIK-REG 211 >gi|110834272|ref|YP_693131.1| OmpA family protein [Alcanivorax borkumensis SK2] gi|110647383|emb|CAL16859.1| OmpA family protein [Alcanivorax borkumensis SK2] Length = 221 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR G I I++ F S+ P VL+ + EVL Sbjct: 83 VQEAKLRQKLEGAGVSVTRDGENI-ILNMPGNLTFATDSTDVKPSFDPVLEAVAEVLKEY 141 Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +I + GHTD++ R N LS RA + L GV + R+ + GF + Sbjct: 142 KSTMIQVAGHTDST---GGDRYNLLLSQQRAQAVSNKLSAFGVEQVRLDPV-GFGETQPI 197 Query: 322 IASDPMNSA--NRRIDILVED 340 ++ + NRR+++ + Sbjct: 198 ASNSSASGREQNRRVELTLLP 218 >gi|49188511|ref|YP_025325.1| OmpA [Pseudomonas alcaligenes] gi|5123490|gb|AAD40344.1|U88088_22 OmpA [Pseudomonas alcaligenes] Length = 220 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 +KG + R G I I+ F + P L ++ + + + + Sbjct: 84 EQMKGSGVQVERQGDEIVIV-MPGAITFATGKAEIQPNFANTLNQLAGSFRNYPDSRLIV 142 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD+ N LS RA S Q L +GV DRI + G ++ ++ Sbjct: 143 TGHTDSV---GSYEANELLSQRRAQSVAQFLRGNGVQTDRIE-VIGAGPNQPVASNATAE 198 Query: 327 MNSANRRIDILVEDR 341 + NRR++I + R Sbjct: 199 GRAQNRRVEIKLAPR 213 >gi|213419089|ref|ZP_03352155.1| flagellar motor protein MotB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 126 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 48/108 (44%) Query: 31 GSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 GSWKI YADFMT +MAFFLVMW+I+ + I +YF +T I + ++P Sbjct: 1 GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSPI 60 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + + N +LK + R + + S+ + Sbjct: 61 PGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPK 108 >gi|59713771|ref|YP_206546.1| OmpA family domain-containing protein [Vibrio fischeri ES114] gi|197337822|ref|YP_002158145.1| OmpA family protein [Vibrio fischeri MJ11] gi|59482019|gb|AAW87658.1| OmpA family domain protein [Vibrio fischeri ES114] gi|197315074|gb|ACH64523.1| OmpA family protein [Vibrio fischeri MJ11] Length = 184 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 13/168 (7%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 S +++ + + + L V ++I T I+I + ++ Sbjct: 19 QSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGS---VAQTNEEIIILLNGDKS-- 73 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S E+ +VL ++ ++L E + I GHTD+ R + N LS RA S Sbjct: 74 -FDSGSIEIKNESKLVLSQLAKLLNDKPESEVFIAGHTDS---RGSKKFNMSLSNQRADS 129 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 +L ++GV +RI+ GF + NRRI+I + Sbjct: 130 VLALLEENGVDGNRIN-TYGFGESEPIATNINAEGRKKNRRIEIRITP 176 >gi|347159|gb|AAC36902.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K GV+ RI+ + G+ R A++ + NRR++ Sbjct: 275 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315 >gi|262170812|ref|ZP_06038490.1| outer membrane protein A precursor [Vibrio mimicus MB-451] gi|261891888|gb|EEY37874.1| outer membrane protein A precursor [Vibrio mimicus MB-451] Length = 322 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + + + + +V+ V T T ++ F +S+ P L K+ Sbjct: 179 EQRPAEPAPVAEEPVVEKVAVTKTFT------FQHLDSGTFANNSAELKPSMETKLDKLV 232 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L + + + GHTD++ N +LS RA + + L GV RI+ G Sbjct: 233 GYLNQYPQAKVEVVGHTDSN---GSKAYNQKLSEKRAQAVAKALEAQGVDAARITA-KGQ 288 Query: 316 AHHRLKIASDPMNSA--NRRIDILV 338 ++ NRR+++++ Sbjct: 289 GESNPIASNATAEGREKNRRVELVI 313 >gi|116249829|ref|YP_765667.1| hypothetical protein RL0063 [Rhizobium leguminosarum bv. viciae 3841] gi|115254477|emb|CAK05551.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 418 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S P +L I L + + I GHTDA A N RLSL+RA + Sbjct: 81 FGVGKSTLQPGAETLLDDIATALKNFPDWSLRIVGHTDA---SGNAETNERLSLERANAI 137 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L++ GV+ DR+ +G R +++ + NRR++++ Sbjct: 138 KAALVERGVNTDRLLA-AGAGQTRPIASNETAEGKALNRRVELV 180 >gi|110636904|ref|YP_677111.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110279585|gb|ABG57771.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC 33406] Length = 620 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 103/305 (33%), Gaps = 39/305 (12%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPP--------------ERSSQNKIDLSIDEHITKNSV 111 Y +P GK L +SKG + + ++ + D+ S Sbjct: 324 APYMHPDGKTLYFSSKGHSTMGGYDVFKTTKLANGVWSTPENMGSPVNTAGDDVYFVLSA 383 Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI---- 167 D KIG + K+ + +I+ + + +L + K T+ +I Sbjct: 384 DGKIGYYSSNKEGGFGKQDIYSIRMPAAENEPELALLKGKILDDQTGKPTEASITITDNA 443 Query: 168 ----------NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 N E +L L K + +K + + + + + Sbjct: 444 TKEIVARYRSNSETGEYLLSLPAGKNYGIAIEKEGHLFYSENMTLNNTNGFKEYKQDITL 503 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASP 276 T +T I + FD + E+ L K+ ++L ++ I I GHTD Sbjct: 504 VTIKTSGKIILR----NIFFDSGKATIRLESTAELLKLVDLLKNNPTLRIEIAGHTDNI- 558 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 N +LS +RA + L +G+S R+ G+ + + D NRR Sbjct: 559 --GDETLNQKLSEERAKNVVTFLTANGISAGRLVA-KGYGSSQPVAPNTTDTGRQQNRRT 615 Query: 335 DILVE 339 +I + Sbjct: 616 EIKIL 620 >gi|304398526|ref|ZP_07380399.1| OmpA/MotB domain protein [Pantoea sp. aB] gi|304354031|gb|EFM18405.1| OmpA/MotB domain protein [Pantoea sp. aB] Length = 570 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD ++ T +++ + + A +I + GHTD + + N Sbjct: 432 IVRLDSMSLFDSGKAVLKTGSTRMLVNSLVGIKAKPGWLIVVSGHTDNT---GNPQLNQT 488 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA + + +G + + G+ R +D + NRR++I + + Sbjct: 489 LSLRRAAAVRDWMRDTGDVPESCFAVQGYGESRPVATNDTPAGRALNRRVEISLVPQ 545 >gi|300113303|ref|YP_003759878.1| OmpA/MotB domain-containing protein [Nitrosococcus watsonii C-113] gi|299539240|gb|ADJ27557.1| OmpA/MotB domain protein [Nitrosococcus watsonii C-113] Length = 283 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P +L K+ E + ++I G+TD+ N N RLS RA +A Sbjct: 181 FGFDSAKLSPNAHTILDKVAEKMRAHPNLKVTITGYTDS--IGNADY-NMRLSKLRAEAA 237 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L G+ R+ + G R ++ + NRR+++ Sbjct: 238 MDYLSSEGIDPSRMEAV-GRGEERPVASNSTKEGRAKNRRVEL 279 >gi|253582681|ref|ZP_04859902.1| outer membrane protein [Fusobacterium varium ATCC 27725] gi|251835551|gb|EES64091.1| outer membrane protein [Fusobacterium varium ATCC 27725] Length = 216 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + ++ G +++ F SS +P L I VL E I + G Sbjct: 88 LKNTEVQVSQKGDNLNLN-LPGGVTFATDSSNIVPSFYGPLNSIATVLVQYPETRIIVNG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329 +TD A N LS RA S L++ GVS RIS + G + R ++ + Sbjct: 147 YTDNV---GSASYNITLSEKRAASVRNYLIQQGVSARRISYVGYGMENPRATNSTAAGRA 203 Query: 330 ANRRIDILVED 340 NRR+++ + Sbjct: 204 ENRRVELEILP 214 >gi|170722410|ref|YP_001750098.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169760413|gb|ACA73729.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 383 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 236 MFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S P + +L + + A +I I GH DA R A N LS RA + Sbjct: 263 LFDPGSDELKPGSTKLLVNALVGIKAQPGWLIVISGHADA---RGDAAKNLDLSRARASA 319 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + G D + G A + ++D + NRR+DI + + Sbjct: 320 VRDWMQRMGDIPDSCFAVQGVAASQPVSSNDTVNGRAENRRVDIRLVPQ 368 >gi|17548982|ref|NP_522322.1| lipoprotein [Ralstonia solanacearum GMI1000] gi|17431232|emb|CAD17912.1| putative outer membrane protein [Ralstonia solanacearum GMI1000] Length = 277 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 84/283 (29%), Gaps = 22/283 (7%) Query: 62 KKAIEQYFNPFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 AI F P + G P + + + + + Sbjct: 3 LDAIRYGFRPATVLAAALAAACLGTLPAHAAPGDPAPASATSPVPGPVVAGGMVPDEATK 62 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 R + + + + + K L + + Sbjct: 63 ASVLARLRELYGSANVVDQIEVGNVVSPPNWTGNVQKILSPQIKQVSRGQLNIDGTQVAV 122 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTP 235 + +R++ D+A + ++ + GL + + L + T +I Sbjct: 123 HGDVQNEAQRQQLASDMATTLGASYTIKNGLRVAAVSEQSLLDQTLANRIIE-------- 174 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ P+ +L ++ VL I I GHTD N LS RA + Sbjct: 175 -FETGSATLTPKGRGILDEMAAVLPRLNGRKIEIVGHTDN---SGSRAMNLNLSQARAET 230 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRID 335 L+ G ++ I G + A+D S NRRI+ Sbjct: 231 VKNYLISKGAEPGTLTAI-GVGPDQPVAPNATDEGRSRNRRIE 272 >gi|299069126|emb|CBJ40378.1| putative outer membrane protein; OmpA/MotB domain [Ralstonia solanacearum CMR15] Length = 279 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 85/283 (30%), Gaps = 22/283 (7%) Query: 62 KKAIEQYFNPFGKNLMTASK---GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 AI+ F P + G P + + + + + Sbjct: 5 LDAIKYGFRPATVLAAALAAACLGTLPAHAAPGDPAPVSAASPVPGQVVAGGMVPDEATK 64 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 R + + + + + K L + + Sbjct: 65 ANVLARLRELYGSANVVDQIEVGNVVSPPNWTGNVQKILSPQIKQVSRGQLNIDGTQVAV 124 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTP 235 + +R++ D+A + ++ + GL + + L + T +I Sbjct: 125 HGDVQNEAQRQQLASDMATTLGASYTIKNGLRVAAVSEQSLLDQTLANRIIE-------- 176 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ P+ +L ++ VL I I GHTD N LS RA + Sbjct: 177 -FETGSATLTPKGRGILDEMAAVLPRLNGRKIEIVGHTDN---SGSRAMNLNLSQARAET 232 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRID 335 L+ G ++ I G + A+D S NRRI+ Sbjct: 233 VKSYLISKGAEPGTLTAI-GVGPDQPVAPNATDEGRSRNRRIE 274 >gi|170723276|ref|YP_001750964.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169761279|gb|ACA74595.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 262 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + + N L + Q+ T+D++ + +E+ +K+ Sbjct: 21 SHDPNANLESARTNFSSLQSDPQASKIAALETKDAQDWLNKADKAYMEREDSKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRSAENELKNASAQRAQAKLDARDAQIAKLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + + K+ + L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSSALPNVTKLAQFLQENPERKVIVEGYTDSV---GSANYNQS 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS RA + L+++GV RI G+ +S+ + NRR+++ + + Sbjct: 194 LSERRAGAVRMALVRAGVDPARIVA-QGYGKEYPVADNSSNSGRAQNRRVEVTISN 248 >gi|241759693|ref|ZP_04757793.1| inner membrane lipoprotein YiaD [Neisseria flavescens SK114] gi|241319701|gb|EER56097.1| inner membrane lipoprotein YiaD [Neisseria flavescens SK114] Length = 226 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 E R G I ++ N F S+ + L + L + ++I GHT Sbjct: 90 NTNIEVERQGNQIKLVMPENVT-FATGSAALSGQAQSALSVAAQTLVQYPDTTLTINGHT 148 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D + N LS +RA S L GVS R+ G+ + ++ + Sbjct: 149 DNT---GNDAINEPLSRNRAESVAIFLQSRGVSSTRL-STFGYGSRQPIASNATVEGRAQ 204 Query: 331 NRRIDILVEDRQ 342 NRR++IL+ Q Sbjct: 205 NRRVEILINPDQ 216 >gi|254524919|ref|ZP_05136974.1| outer membrane protein [Stenotrophomonas sp. SKA14] gi|219722510|gb|EED41035.1| outer membrane protein [Stenotrophomonas sp. SKA14] Length = 363 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 254 FDFDKSNLRPDAVAILGEATEILKRYPDLRVEVAGHTDS---KGTDAYNQKLSERRATAV 310 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 311 YNYLTKNGVDAGRLIGPVGYGKSRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 363 >gi|170722426|ref|YP_001750114.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169760429|gb|ACA73745.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 576 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%) Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F+ S+ PE+ L + A +I I GHTDA+ N RLS RA Sbjct: 446 SLFNSGSAQLKPESTKFLVNAFAGIKAQPGWLIVITGHTDAT---GSDEQNLRLSRARAA 502 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 + + + G + + G ++D S NRR++I + G Sbjct: 503 AVHDWIQHMGDIPNNCFAVQGLGASEPVASNDTEQGRSTNRRVEIRLVPEAG 554 >gi|162452165|ref|YP_001614532.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161162747|emb|CAN94052.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 467 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ + L+ + ++L + I GHTDA A N LSL RA Sbjct: 364 FQFGTTELTEASRPKLEALADILDAYPTARVRIEGHTDAV---GGAEGNRSLSLARAQEV 420 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L ++ DRI ++G ++ +D + NRRID+ V R Sbjct: 421 RNELTARQIAPDRIE-VAGMGANQPVAPNDTAGGRAQNRRIDVTVLSR 467 >gi|327395890|dbj|BAK13312.1| inner membrane lipoprotein YiaD precursor [Pantoea ananatis AJ13355] Length = 237 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR G I + N FD SSS P L + VL Sbjct: 100 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSSSLKPAGANTLTGVAMVLKEY 158 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRL 320 + +++ GHTD++ R + N RLS RA S L+ GV+ DR+ + +G Sbjct: 159 PKTAVNVVGHTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRLHTRGAGPDSPVA 215 Query: 321 KIASDPMNSANRRIDILV 338 +++ + NRR++I + Sbjct: 216 TNSTEAGKAQNRRVEITL 233 >gi|320106074|ref|YP_004181664.1| OmpA/MotB domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924595|gb|ADV81670.1| OmpA/MotB domain protein [Terriglobus saanensis SP1PR4] Length = 524 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 92/253 (36%), Gaps = 9/253 (3%) Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 N + K D ++ + +V + + + E + Q +E Sbjct: 264 NADDMDGSKKRDEKMEITYAREAVQRAEDARLSSIRKRIAEERQAEVDARQTAEAQAQQS 323 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 +++ + E + + A D A++ L + Sbjct: 324 AMAAQQSQLDAAKAQAEAERSAAAKAQADAQRAQAEAAAANANASADAAREAVVKLRQQM 383 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 D + + + T G+++S+ D +FD +T + L K+ ++A + + Sbjct: 384 RDQLNSILATKETPRGLVVSLSD----VLFDTGKYTLKGDTKISLAKVAVIVASHPDLKL 439 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASD 325 + G+TD+ N +LS +RA S L+ + V+ I+ + G +H + Sbjct: 440 QVEGYTDSV---GSDDLNQKLSENRANSVKAFLIANSVNPGNITSLGYGKSHPVADNGTS 496 Query: 326 PMNSANRRIDILV 338 + NRR+++++ Sbjct: 497 AGRAQNRRVELVI 509 >gi|227824113|ref|YP_002828086.1| putative outer membrane protein, OmpA/MotB domain protein [Sinorhizobium fredii NGR234] gi|227343115|gb|ACP27333.1| putative outer membrane protein, OmpA/MotB domain protein [Sinorhizobium fredii NGR234] Length = 221 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + F +P L + VL + I + G Sbjct: 91 LQGTGISVTRQGDRI-ILNMPSNITFATDRDQVIPPFYPTLDSVAIVLRKYNKTLIDVDG 149 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 HTD++ A N LS RA S L G+ + RI G+ R ++ + Sbjct: 150 HTDST---GSAAHNQDLSERRAASVANYLGSRGIDQRRI-STMGYGMERPVASNSSEAGR 205 Query: 329 SANRRIDILVED-RQG 343 + NRR++I + +QG Sbjct: 206 AQNRRVEISIAPIKQG 221 >gi|262378528|ref|ZP_06071685.1| OmpA/MotB [Acinetobacter radioresistens SH164] gi|262299813|gb|EEY87725.1| OmpA/MotB [Acinetobacter radioresistens SH164] Length = 485 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +L + +L V+ +++GHTDA +N LS+ RA + Sbjct: 365 FASGSAQVPDVNKPILDQAAALLQRVPNVVVTVKGHTDAE-GSEAVNNN--LSVQRAQAV 421 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+ GVS ++ + G+ + + NRRI+ + + Sbjct: 422 VNYLVSRGVSPSKL-QALGYGQDQPVTDNATSQGKFQNRRIEFEILN 467 >gi|308270955|emb|CBX27565.1| hypothetical protein N47_H23870 [uncultured Desulfobacterium sp.] Length = 229 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 7/160 (4%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 M R++ A S S ++ ++++ + + ++ ++ +SS Sbjct: 73 MDRQEAAMRQALADSEAASINREQQVLAQATADSSKKVRDVLTVTFKSDFLYAVNSSTLF 132 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P L ++ +V+ + I + GHTD++ A N +LS RA + L+ GV Sbjct: 133 PGAYDELDRVAKVINQYPDTRIQVGGHTDST---GSAEYNQKLSEQRAQAVKNALVSRGV 189 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + RIS I G+ ++ +++ NRR++I + Q Sbjct: 190 NASRISAI-GYGENKSIASNETEAGRQQNRRVEIRIIPNQ 228 >gi|115376409|ref|ZP_01463646.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|115366616|gb|EAU65614.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 723 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 82/234 (35%), Gaps = 17/234 (7%) Query: 111 VDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 V + + + + + + +Q+ +K + + K + Sbjct: 504 VPGQPQTVEVALESMAQPATLSFSTTAQKKPVAATLRLSGPQKQELATSAAAPTKLVLPP 563 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +Y + ++ + + + + A+ + L + V + +L + Sbjct: 564 GHYLVDVMAPGYLAQTREVQVAEGTAQSFAFDLKPAPKKKL---VTVADNKLALLQQVQ- 619 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 F ++ + +L ++ +V+ + + + + HTD N +LS Sbjct: 620 ------FADGKAVIQANSQPLLAQVVDVIVRNNIQRVRVEAHTDNQ---GNPAANLKLSQ 670 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 +RA + L +SG+ R+ + G+ R + NRR++ ++ ++ Sbjct: 671 ERAQAVATFLAQSGLDAARME-VQGYGDARPIAPNLTPRGKELNRRVEFIILEQ 723 >gi|256820114|ref|YP_003141393.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581697|gb|ACU92832.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 456 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 E T + + D T +FD + + P++ VL +I +VL SI G+TD Sbjct: 336 EVTEE-VQKKLNDFARTILFDVNKATIRPQSATVLNQIVDVLNQYKNAKFSIEGYTD--- 391 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 N +LS +RAYS L++ G+ E R++ GF + ++ NRR+ Sbjct: 392 ISGKRDKNQKLSENRAYSVKAYLIEKGIDEGRLTA-KGFGPDKPIASNKTKKGRELNRRV 450 Query: 335 DI 336 +I Sbjct: 451 EI 452 >gi|255319448|ref|ZP_05360662.1| outer membrane protein [Acinetobacter radioresistens SK82] gi|255303388|gb|EET82591.1| outer membrane protein [Acinetobacter radioresistens SK82] Length = 486 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +L + +L V+ +++GHTDA +N LS+ RA + Sbjct: 366 FASGSAQVPDVNKPILDQAAALLQRVPNVVVTVKGHTDAE-GSEAVNNN--LSVQRAQAV 422 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+ GVS ++ + G+ + + NRRI+ + + Sbjct: 423 VNYLVSRGVSPSKL-QALGYGQDQPVTDNATSQGKFQNRRIEFEILN 468 >gi|209550136|ref|YP_002282053.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535892|gb|ACI55827.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 221 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + FD P L + VL I + Sbjct: 91 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204 Query: 328 NSANRRIDILV 338 + NRR++I + Sbjct: 205 RAQNRRVEIQI 215 >gi|110637988|ref|YP_678195.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110280669|gb|ABG58855.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC 33406] Length = 517 Score = 83.4 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 + + + G + + N FD S S E+ L ++ +L ++ I Sbjct: 390 QEVKQDLYLVPVEIGQTVQL----NNIFFDVSKSTLRQESYAELDRLYLILQNNPVMEIE 445 Query: 268 IRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I GHTD P N+ LS DRA + L+K G++ RI GF + +++D Sbjct: 446 IDGHTDNVGDPIINMQ-----LSNDRANAVKDYLLKKGIAPGRIV-TKGFGGTKPIVSND 499 Query: 326 PMNSA--NRRIDILVE 339 NRR++ + Sbjct: 500 TEELKKLNRRVEFTIL 515 >gi|227115434|ref|ZP_03829090.1| putative porin [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 505 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + R + LAK + + T G++ + D MFD +S+ + Sbjct: 78 QNREEALAKIAQEENIAMTTRALQSQEKSGTETVGLVAQVQDS---GMFDTNSAQLSTDG 134 Query: 249 IVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + ++KI + + VI + GHTDA+ A N RLS RA + +VL ++G+S Sbjct: 135 LRQVKKIATAMKEGDQSGVILVVGHTDAT---GSAEWNQRLSEQRAQNVGRVLEQAGLSA 191 Query: 307 DRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ + +G A A+ +ANRR++I+ Sbjct: 192 QKLYFQGAGSARPVADNATVTGRTANRRVEIV 223 >gi|209522383|ref|ZP_03270996.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209497180|gb|EDZ97422.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 150 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHT 272 G I +Q + + FD SS P VL ++ + L + EV+ S+ GHT Sbjct: 18 GTGTQITEQPDGSLKLNIPSSVTFDTSSYTIKPSFAPVLDQLAQTLQQNPEVVASVVGHT 77 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D++ + N LS++RA S L + G++ R+S +G ++ ++ +A Sbjct: 78 DST---GSLQYNQTLSVNRAESVTGYLTQRGIAPQRLSA-TGMGPNQPIADNNTEAGRAA 133 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 134 NRRVEIYL 141 >gi|148254500|ref|YP_001239085.1| putative outer membrane protein and related peptidoglycan-associated (lipo)proteins [Bradyrhizobium sp. BTAi1] gi|146406673|gb|ABQ35179.1| putative outer membrane protein and related peptidoglycan-associated (lipo)proteins [Bradyrhizobium sp. BTAi1] Length = 707 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLD 290 + FD S+ E++ +L I V I I GHTD DN LS Sbjct: 601 KGRIRFDTGSAELSRESLALLDHIVVVAQRCKDAEIVIEGHTDNV---GDEEDNMDLSKR 657 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 RA + + ++G+ R++ +G+ R ++D + NRRI+ +V+ Sbjct: 658 RAVAVVGYIGEAGIDTSRMTS-AGYGQTRPIASNDTAEGRAQNRRIEFVVK 707 >gi|254411320|ref|ZP_05025097.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420] gi|196181821|gb|EDX76808.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420] Length = 293 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 89/259 (34%), Gaps = 18/259 (6%) Query: 84 FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 F + PE+ K+ +E + S S + + Q Sbjct: 50 FYPRTNPEKPFFLKMASHFEEQMPVVSPHTTPTSIPEPTGSPPQLTPVQRQQVQAQLTQL 109 Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + L SE L + E L ++ + + ++T+ Sbjct: 110 QGQLRSLSEGVATLEVQLGSSRPNESLE-ARLQAIALQLEGVQPPPEEATSNGNNPNATV 168 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHS 262 +D+ + T + +F+ ++S+ PE ++L KI ++ + Sbjct: 169 MAASSDSFGSSQTLKVT----------LPSDVLFEGNNSLLRPEAGLILDKIIADLRNYP 218 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I I HTD+ DN LS RA + Q ++ + R + G+ R + Sbjct: 219 SSTIRIAAHTDSQ---GEPEDNRELSFRRAKAVEQYFARALGDDYRWL-VVGYGEIRPLV 274 Query: 323 ASDPMN--SANRRIDILVE 339 A+D NRRI+I VE Sbjct: 275 ANDTDANQQRNRRIEISVE 293 >gi|197117628|ref|YP_002138055.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] gi|197086988|gb|ACH38259.1| OmpA family outer membrane protein, OprF domain-containing protein [Geobacter bemidjiensis Bem] Length = 434 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P+ L+ + + L I GHTD N +LS RA + Sbjct: 328 FDTNKADLKPQYRPELKALADFLNEFPNATGVIEGHTDNV---GPKALNMKLSQSRADTI 384 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 L+K G++ +RI + G+ + ++ + NRRI+ Sbjct: 385 RNSLIKEFGIAPERIKAV-GYGPTKPVASNKDKAGKAKNRRIE 426 >gi|310816653|ref|YP_003964617.1| flagellar motor protein [Ketogulonicigenium vulgare Y25] gi|308755388|gb|ADO43317.1| flagellar motor protein [Ketogulonicigenium vulgare Y25] Length = 510 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 98/267 (36%), Gaps = 29/267 (10%) Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 D ++ + + ++ ++Q + + + + Q+ +N L D + Sbjct: 225 GARDTALTDAEAQAALLALAQQQLSEQQEMSSQAQLQVEALNAQAAALRNQL-GDLQGLL 283 Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 D D + E + ++ A +R+ R + A++I + + Sbjct: 284 DASAVADSVAQVQIESLGSQLNAALARVAAEERRARTLEEAERIRLEEEARRLAEEAESL 343 Query: 216 L-FETTRTGILISIIDQRN-------------TPMFDKSSSIPLPETIVVLQKIGEVL-- 259 + + G L +++D ++ +F+ S+ + + +L Sbjct: 344 EQYRSEFFGSLRALLDGQDGVQIVGDRFVFSSEVLFEAGSATLSAAGDAEIANVAALLRR 403 Query: 260 ------AHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAY-QVLMKSGVSEDRIS 310 + VI + GHTD +P +NW LS RA S ++ G+ +R++ Sbjct: 404 IASEIPSQIDWVIRVDGHTDNTPLSGTGEFANNWELSQARALSVVLYMIQNEGIPPNRLA 463 Query: 311 KISGFAHHRLKIASDP--MNSANRRID 335 +GF ++ ++ + NRRID Sbjct: 464 A-NGFGEYQPLNPANTPEARAQNRRID 489 >gi|312963125|ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gi|311282636|gb|EFQ61232.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 229 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 22/190 (11%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRT 222 ++ E + E +R K +S L+ + +D + L + Sbjct: 32 QNKAAEAAMAVEKQQMEAARQEERSKGDAAQRASLSKLLAAMQSDLQRTGETDLVDIDIQ 91 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVL----QKIGEVLAHST-EVISIRGHTDASPF 277 +++ D F + S+ P L ++ + + + GHTD P Sbjct: 92 NRRLTLPDNA----FARGSACITPAAQGALTLLSARVATFIKDYGQGQVLVEGHTDNLPV 147 Query: 278 R----------NIARDNWRLSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDP 326 + DN+ LS RA A ++L+++ + R ++G+ R K DP Sbjct: 148 SRPVTDYERFCTVYDDNYTLSAARAREARKLLIQAIEPQQARRVVVAGYGDSRPKPGIDP 207 Query: 327 MNSANRRIDI 336 ++ NRR+++ Sbjct: 208 ASALNRRVEV 217 >gi|51244080|ref|YP_063964.1| outer membrane protein F [Desulfotalea psychrophila LSv54] gi|50875117|emb|CAG34957.1| probable outer membrane protein F [Desulfotalea psychrophila LSv54] Length = 216 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 + FD +S P + ++ VL I + GHTD+ N +LS Sbjct: 111 KGETFFDTNSFTIKPGGWAEVNRVATVLNKYPNTNIKVAGHTDSL---GNEAYNQQLSER 167 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 RA + L++ GV+ +RI I G+ +S+ + NRR++I++ Q Sbjct: 168 RARAVKNALIQYGVNGNRIRAI-GYGESLPISSSN---AQNRRVEIVITPNQA 216 >gi|332667579|ref|YP_004450367.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336393|gb|AEE53494.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 239 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 18/225 (8%) Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 K Q+ + + S+ +S K + + N + + Sbjct: 19 KSAQKTQTSTGQRSDKPKSAKDKTTKGAVIGAAGGAVIGGIIGNKGNNTVIGAIIGAAAG 78 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + ++ AKK+ L E GI ++ + +FD Sbjct: 79 GAVGAVIGSKMDKQAKKMEEDLGNTA--------TVERVGEGIKVTF---NSQLLFDFGK 127 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S + L+ E L + + + I GHTD N LS +RA + L Sbjct: 128 SSLMESNKQTLESFAETLKQNPDTDLLIVGHTDNV---GSDAFNQSLSENRAAAVSNHLS 184 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 GVS R+ KI G + +A+ + NRR++I + + Sbjct: 185 TFGVSSSRL-KIQGMGEKQPLVANTTESERAQNRRVEIAIIANEA 228 >gi|77919760|ref|YP_357575.1| outer membrane protein [Pelobacter carbinolicus DSM 2380] gi|77545843|gb|ABA89405.1| outer membrane protein [Pelobacter carbinolicus DSM 2380] Length = 224 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ + + L+G V+G + + ++ ++ +FD +S Sbjct: 76 MEKQEQAMRQQLAG------VEGASIQRDAEVLAVTF---KSDVLFDVNSYSVKSGGYDE 126 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 LQ++ VL + + I I GHTD++ + N +LS RA + VL+ GV+ R+ Sbjct: 127 LQRVAGVLNNYPQTSIQIAGHTDST---GSEQYNMQLSRQRAEAVKNVLVGYGVAPARLM 183 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + G+ + A++ NRR+ I + Q Sbjct: 184 TV-GYGESKPIASNANEAGRQINRRVAITITPNQ 216 >gi|300703368|ref|YP_003744970.1| outer membrane lipoprotein [Ralstonia solanacearum CFBP2957] gi|299071031|emb|CBJ42340.1| putative outer membrane lipoprotein [Ralstonia solanacearum CFBP2957] Length = 209 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 11/144 (7%) Query: 204 SGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S L D G G + ++I + FD S++ P L + E L Sbjct: 73 SKLTGDTAGTGTQISEQPDGSLKLNI---PSQVSFDTDSAMIKPSFRGPLDSVAETLTQH 129 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E S+ GHTD++ N LS RA S L GV+ R++ G + Sbjct: 130 PELAASVVGHTDST---GNPNYNMSLSQRRAQSVTSYLTDRGVARTRLTA-EGRGQTQPV 185 Query: 322 --IASDPMNSANRRIDILVEDRQG 343 A++ + NRR++I ++ QG Sbjct: 186 GDNATEAGRAQNRRVEIYLKPIQG 209 >gi|260890151|ref|ZP_05901414.1| OmpA family protein [Leptotrichia hofstadii F0254] gi|260860174|gb|EEX74674.1| OmpA family protein [Leptotrichia hofstadii F0254] Length = 215 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 N +KG + RTG + FD +S + P+ L + VL + I + Sbjct: 83 NKLKGTGVDVKRTGEGEIKLTAPENITFDINSYVIKPQFRNTLDSVATVLKTYPDSTIVV 142 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD + N A +N LS++RA S L G+S RI+ GF + ++ + Sbjct: 143 SGHTDTT--GNDAINN-PLSINRASSVESYLESQGISSSRITS-RGFGSKQPIASNSTEA 198 Query: 327 MNSANRRIDI-LVEDRQ 342 + NRR++I ++ ++Q Sbjct: 199 GRAQNRRVEIAIIANQQ 215 >gi|91777910|ref|YP_553118.1| putative flagellar motor protein motB [Burkholderia xenovorans LB400] gi|91690570|gb|ABE33768.1| Putative flagellar motor protein motB [Burkholderia xenovorans LB400] Length = 170 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 2 NSHGDKNQENDQFIIIKK-KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 NS + ++ +I+++ K D ++ G+WKI YAD +T +MAFFL+MW++ +T Sbjct: 6 NSRAPQGEQALAPVIVRRSKKGEDHGGHHGGAWKIAYADCVTAMMAFFLLMWLLGSTSKY 65 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQ-NPPERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 K+ IE YFN +L+ ++G + + + ++ D + S + + Sbjct: 66 DKQGIEDYFNTPLSSLIGGNEGTAAARPSVVQGGGRDISDTRPATAVCIESNACALSFPS 125 Query: 120 QKKQYQRLENNIFYLS 135 R + S Sbjct: 126 HGSPSFRCIRPVLRQS 141 >gi|162448339|ref|YP_001610706.1| outer membrane porin precursor [Sorangium cellulosum 'So ce 56'] gi|161158921|emb|CAN90226.1| outer membrane porin precursor [Sorangium cellulosum 'So ce 56'] Length = 608 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 13/132 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHT 272 V T T I+I FD + P + +L ++ VL E I ++GHT Sbjct: 482 VAVRVTETEIVIL-----QQVQFDTGKATIRPVSNELLDEVAGVLKDHPEILKIEVQGHT 536 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D R + N +LS RA S + L++ G++ R+ + G+ ++ Sbjct: 537 DD---RGTRQFNTKLSQARAESVLKALVERGIAAQRL-QAKGYGPDVPIAENKTEAGRQK 592 Query: 331 NRRIDILVEDRQ 342 NRR+ + +++ Sbjct: 593 NRRVQFNIIEKE 604 >gi|313677015|ref|YP_004055011.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312943713|gb|ADR22903.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 670 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 FD SS E++ L+ I ++L +S + + I GHTD N N LS R Sbjct: 558 KNIFFDTGSSDLRTESLGELKVIKDLLTNSPDLRVQINGHTDN--VGNSVY-NKLLSKKR 614 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM---NSANRRIDILVE 339 A S L+ +G++ +R+ GF + +++D NRR +I + Sbjct: 615 AQSVVDYLIANGINSERLEA-KGFGEEKPLVSNDDEIGGREINRRTEIEIL 664 >gi|331648547|ref|ZP_08349635.1| putative OmpA-family membrane protein [Escherichia coli M605] gi|330908848|gb|EGH37362.1| putative outer membrane lipoprotein [Escherichia coli AA86] gi|331042294|gb|EGI14436.1| putative OmpA-family membrane protein [Escherichia coli M605] Length = 550 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWHPPEQKMEVTAS-LPVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|332975535|gb|EGK12425.1| OmpA domain protein [Desmospora sp. 8437] Length = 243 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD S + L K+G+ L + I G+TD R A N +LS +R Sbjct: 135 PGHILFDTDQSTIRAKARPELDKLGKSLKEYKGTVRIYGYTDD---RGSAAYNQKLSQER 191 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 A + L+K G++ D + KI GF + + D NRR++I+V+ + Sbjct: 192 AEAVKAYLVKECGIAGDHL-KIKGFGKKHPVVPNNSDSNRQKNRRVEIIVDSK 243 >gi|255264641|ref|ZP_05343983.1| inner membrane lipoprotein YiaD [Thalassiobium sp. R2A62] gi|255106976|gb|EET49650.1| inner membrane lipoprotein YiaD [Thalassiobium sp. R2A62] Length = 223 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 20/208 (9%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK--KRLQDL 195 Q + + + + G + + + EE L +RL Sbjct: 30 QDPNNPNRNTQQGALIGAATGIAVGILAGDDPEERRRGALLGAVVGGGGGALIGQRLDQQ 89 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + +L G V T + +++S+ +F SS L + Sbjct: 90 EVALRQSLGG--------NVGITNTGSELIVSL---PQDILFATDSSTLTGGLQSDLNAL 138 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L +++ GHTD + ++ LS RA + VL+ +GVS RI+ G Sbjct: 139 ANNLNQYPNTTVNVIGHTDN--VGDAGYND-GLSTRRATAVANVLLNAGVSSGRINA-FG 194 Query: 315 FAHHRLKIAS--DPMNSANRRIDILVED 340 + + D + NRR++I++ Sbjct: 195 RGEAQPIATNLTDEGRAQNRRVEIVITP 222 >gi|241764375|ref|ZP_04762401.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] gi|241366218|gb|EER60782.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] Length = 215 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 16/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++ +++ G G+ T+ L +D + F + P Sbjct: 71 QNMERQKREMEQATRGT-------GIAVSQTQDNQL--KLDIPSDISFAVGRADIQPNFA 121 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + E L E + I GHTD + N LS++RA S LM GV R Sbjct: 122 PVLDRFAEGLRAHPETDVRIVGHTDNT---GSDAVNDPLSVNRASSTRNYLMNRGVDGRR 178 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 I + G + A+ S NRR++I V +R Sbjct: 179 I-SVEGMGERQPIATNATAEGRSRNRRVEIFVGER 212 >gi|222150201|ref|YP_002551158.1| porin [Agrobacterium vitis S4] gi|221737183|gb|ACM38146.1| porin [Agrobacterium vitis S4] Length = 221 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 10/135 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + F LP L + VL + + Sbjct: 91 LQGTGVSVTRQGDRI-ILNMPSNITFPTDQDQVLPPFYPTLNSVAIVLKKF-NRTLVDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD++ + N LS RA S L GV R+S + GF + + Sbjct: 149 GHTDST---GGLQHNQDLSQRRAESVLNYLGSQGVDPRRMSAM-GFGPSQPIATNATPQG 204 Query: 328 NSANRRIDILVEDRQ 342 + NRR+++ + + Sbjct: 205 RAQNRRVEVAISPLK 219 >gi|24216275|ref|NP_713756.1| flagellar motor protein MotB [Leptospira interrogans serovar Lai str. 56601] gi|24197541|gb|AAN50774.1| flagellar motor protein MotB [Leptospira interrogans serovar Lai str. 56601] Length = 275 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 21/176 (11%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 E + + K L + + V VK G++IS++ F+ Sbjct: 78 ESLPSQTTGKALSKSKQLATELFKPEVEAGKVK---ITEDERGLIISLVSAD---YFNPG 131 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR---------NIARDNWRLSLDR 291 S+I + L+K ++ + + + GH DA+ +NW L+ R Sbjct: 132 SAILTDSIKIALRKASSLIKNLNRFVRVEGHCDANAVNPGVAPGKEERAYINNWDLAGAR 191 Query: 292 A-YSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSA-NRRIDILVEDRQ 342 A S ++ + +S F R + A P A NRRIDI++ + Sbjct: 192 AINSTDYIINVEKLDPSWFQAVS-FGAFRPLVVEYAGTPEAKAYNRRIDIVIMTEK 246 Score = 44.1 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + N+ + + Y D +T+L+ FF++++ T+ + I F Sbjct: 3 KSKCPECIQNIPEYMLTYGDMVTLLLCFFIMLYTTGKTNAIEMQIILSAFKT-------- 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 + G FD + ++ ++I+ ++ + Sbjct: 55 TTGFFDGGQTLSKGRLEEMGMNIESLPSQTTG 86 >gi|255037616|ref|YP_003088237.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950372|gb|ACT95072.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 412 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S LPE+ L ++ +V++ S I + GHTD N LS RA S Sbjct: 310 FETSKYTLLPESYEELNRLVDVMSDSPTVKIRVEGHTDNV---GDFDKNLELSRQRAESV 366 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILVED 340 L++ G+ RI G+ R S+ NRR++ ++ D Sbjct: 367 KNYLVEKGIEGSRIEA-KGYGGTRPITKGSEEERKKNRRVEFVITD 411 >gi|323495403|ref|ZP_08100480.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546] gi|323310326|gb|EGA63513.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546] Length = 322 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +SS E+ +L ++ + + + + I G+TD+ A N +LS R Sbjct: 211 DSGSFALNSSELKEESKSILDELVQFMNQYPQANVEITGYTDS---SGAAAYNQKLSEKR 267 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A S L G+ RI+ +SG + +++ NRR++I+V Sbjct: 268 AQSVANALESEGIDSSRIT-VSGEGENNPIASNETREGREQNRRVEIVV 315 >gi|289209442|ref|YP_003461508.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288945073|gb|ADC72772.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 221 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++G TR G I I++ FD + PE VL + VLA + I + Sbjct: 89 EQLRGTGVSVTRDGDNI-ILNMPGHITFDIDRTDIKPEFEEVLNSVALVLAEYDQTGIEV 147 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD N LS RA S + L++ GV R+ + GF H+ ++ Sbjct: 148 AGHTD---ITGRVEYNMDLSERRAQSVGRALIRRGVQSVRVDTV-GFGPHQPIATNETAE 203 Query: 327 MNSANRRIDILV 338 + NRR+++ + Sbjct: 204 GRALNRRVELTL 215 >gi|86358413|ref|YP_470305.1| outer membrane lipoprotein [Rhizobium etli CFN 42] gi|86282515|gb|ABC91578.1| outer membrane lipoprotein [Rhizobium etli CFN 42] Length = 221 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + FD P L + VL I + Sbjct: 91 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204 Query: 328 NSANRRIDILV 338 + NRR++I + Sbjct: 205 RAQNRRVEIQI 215 >gi|330959172|gb|EGH59432.1| ompA family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 260 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 88/237 (37%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N E ++ + + + +D+ K L Sbjct: 21 ATKPNPNLEQARSNYTALQTNPEATKVAALETKDASEWLDKAEKAFRDDEDVKKVDQLAY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKADLKPTAQGDIGKLAAFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248 >gi|320354509|ref|YP_004195848.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123011|gb|ADW18557.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 212 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD +SS P L +I VL + + I + GHTDA R + N +LS RA + Sbjct: 110 FFDTNSSQLKPGAYNELNRITNVLNNYPQTTIRVEGHTDA---RGSDQYNQQLSERRAMA 166 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L + GV+ RI + G+ + +SD M NRR++I++ Sbjct: 167 VKNALAQQGVNPSRIEAV-GYGESQPISSSDAM---NRRVNIVI 206 >gi|114776497|ref|ZP_01451542.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Mariprofundus ferrooxydans PV-1] gi|114553327|gb|EAU55725.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Mariprofundus ferrooxydans PV-1] Length = 499 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 14/255 (5%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 D E I D + N + + + + + + Sbjct: 248 DTGSHEAIILKQRDFRFKLATLLDIDTDSNNPMLSRTQPAKIIAAVREMKQTLATERKAR 307 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 K+ ++ E + L+ ++ ++ ++ + + L + + L Sbjct: 308 KAERVQLKQQYETELKARLAEETSQLSKAQQSQMSNIKEAFQAKLERETYEQKRQQRLRA 367 Query: 219 TTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRG 270 + + + + + + F SS + +L ++ E A ++ I I G Sbjct: 368 LFKPNQVELLANLDGSILMRLSALKFASGSSKINAKYYDMLGQVKEAFAIYADRKIRIEG 427 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 HTD + + N RLSL RA + L+ +G R+ + G+ R ++ D Sbjct: 428 HTDN---KGDVKVNQRLSLKRAEAVRDFLIAAGADGSRLKAL-GYGEVRPIASNEFDRGR 483 Query: 329 SANRRIDILVEDRQG 343 + NRRID+++E G Sbjct: 484 AMNRRIDVVIEAPAG 498 >gi|60115453|dbj|BAD90019.1| MotB [Pectobacterium carotovorum subsp. carotovorum] Length = 175 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 Q II+KK ++ GSWKI YADFMT +MA FLVMW+I + I +YF Sbjct: 2 KHQHPIIRKKRKSGHGGHHGGSWKIAYADFMTAMMALFLVMWLIAISTPMQLAQIAEYFR 61 Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKI--DLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 K +T+ D +P + D + + I ++V+ K+ + +RL+ Sbjct: 62 TPLKVALTSGSKSSDSSSPIPGGGNDPTQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLD 121 Query: 129 NNIFYLSN 136 I Sbjct: 122 QLIEADPR 129 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILI 226 +++ + + + + RL L +++ + ++ +L E G+ I Sbjct: 89 TQQDGEVKKAIKTDNVEKKLDEVRLNRLRERLDQLIEADPRLRALRPHLLIEMIDEGLRI 148 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 IID +N PMF S+ P +L+ Sbjct: 149 QIIDSQNRPMFKTGSAQVEPYMRDILR 175 >gi|15596238|ref|NP_249732.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|116048969|ref|YP_792229.1| hypothetical protein PA14_50880 [Pseudomonas aeruginosa UCBPP-PA14] gi|152988234|ref|YP_001349691.1| hypothetical protein PSPA7_4338 [Pseudomonas aeruginosa PA7] gi|218892997|ref|YP_002441866.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254234177|ref|ZP_04927500.1| hypothetical protein PACG_00011 [Pseudomonas aeruginosa C3719] gi|254239398|ref|ZP_04932720.1| hypothetical protein PA2G_00011 [Pseudomonas aeruginosa 2192] gi|296390597|ref|ZP_06880072.1| putative outer membrane protein precursor [Pseudomonas aeruginosa PAb1] gi|313105992|ref|ZP_07792253.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|9946954|gb|AAG04430.1|AE004536_9 probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|115584190|gb|ABJ10205.1| probable outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|126166108|gb|EAZ51619.1| hypothetical protein PACG_00011 [Pseudomonas aeruginosa C3719] gi|126192776|gb|EAZ56839.1| hypothetical protein PA2G_00011 [Pseudomonas aeruginosa 2192] gi|150963392|gb|ABR85417.1| probable outer membrane protein [Pseudomonas aeruginosa PA7] gi|218773225|emb|CAW29037.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|310878755|gb|EFQ37349.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 210 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F SS L I E L ++ +SI GHTD+ N +LS RA + Sbjct: 105 FAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDSV---GSDAYNQKLSERRANA 161 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L+ +GV I + G + + + NRR++IL++ Sbjct: 162 VANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIKR 209 >gi|241205517|ref|YP_002976613.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859407|gb|ACS57074.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 221 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + FD P L + VL I + Sbjct: 91 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204 Query: 328 NSANRRIDILV 338 + NRR++I + Sbjct: 205 RAQNRRVEIQI 215 >gi|332297244|ref|YP_004439166.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] gi|332180347|gb|AEE16035.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] Length = 436 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 18/182 (9%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 +E + + ++ + A + RL D+ ++I ++ Sbjct: 270 VESAYGNTFEFSGKAQAEVQEFASRSADRLADVRERIDQL--------GIENAQVRADEK 321 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 G+ IS+ F S++ L + L+KI E+L+ + I GHT A + Sbjct: 322 GLTISL----ENIQFKADSAVLLESEKMKLRKIAEILSLFPENDLLITGHT-ALAGTAAS 376 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 R LS RA + + LM+ G+ + G + + NRR++I V Sbjct: 377 RT--ALSEQRAKAVAEYLMQLGIRDSYHIFTQGLGGEHPIAPNTTEANKARNRRVEITVM 434 Query: 340 DR 341 D+ Sbjct: 435 DK 436 >gi|120613283|ref|YP_972961.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1] gi|120591747|gb|ABM35187.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 217 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 18/159 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++ +++ G V+ +T + + D + F + S P Sbjct: 72 QHMERQKQEMQQVTQG------TGVVVTQTQDNQLKL---DIPSDISFATNRSDIQPNFA 122 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + E L ++ + I G+TD++ N A +N LSLDRA S L GV+ R Sbjct: 123 PVLDRFAEGLRNNPNAEVRIVGYTDST--GNDAINN-PLSLDRATSTRNYLTARGVNGAR 179 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV--EDRQG 343 + ++ G +D + NRR++I V RQG Sbjct: 180 V-QVEGRGAREPVATNDTAEGRARNRRVEIYVGERPRQG 217 >gi|154247748|ref|YP_001418706.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161833|gb|ABS69049.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2] Length = 729 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + ++ ++ L ++ I GHTD A N RLS RA + Sbjct: 624 FASGSAEIDRHSRGLIDRLAVALKRCPTAMVRILGHTDGV---GDAEFNKRLSEARANAV 680 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 L+ +GV+ DR+S +GF + +D + NRRI+ V++R Sbjct: 681 LAYLVTAGVTADRLSA-AGFGAGQPLAPNDTEAGKALNRRIEFEVKER 727 >gi|261856894|ref|YP_003264177.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261837363|gb|ACX97130.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 331 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L ++ ++L + I GHTD + N +LS DRA + Sbjct: 229 FATDSAALEASSDKELGEMAKMLKQEPSAHVYIVGHTDDT---GALPHNLKLSRDRADAV 285 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 + L+ + G+S +R+ G A ASD + NRR++I+++ Sbjct: 286 VKALITRYGISSNRLVA-EGVASFAPVASNASDQGRALNRRVEIVLQ 331 >gi|190892542|ref|YP_001979084.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli CIAT 652] gi|190697821|gb|ACE91906.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli CIAT 652] gi|327192440|gb|EGE59397.1| outer membrane peptidoglycan-associated lipoprotein [Rhizobium etli CNPAF512] Length = 221 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + FD P L + VL I + Sbjct: 91 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204 Query: 328 NSANRRIDILV 338 + NRR++I + Sbjct: 205 RAQNRRVEIQI 215 >gi|332085086|gb|EGI90266.1| inner membrane lipoprotein yiaD [Shigella boydii 5216-82] Length = 238 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 102 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 160 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 161 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 216 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 217 ASNSTAEGKAQNRRVEITL 235 >gi|294852539|ref|ZP_06793212.1| outer membrane protein [Brucella sp. NVSL 07-0026] gi|294821128|gb|EFG38127.1| outer membrane protein [Brucella sp. NVSL 07-0026] Length = 258 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 102 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 160 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + ++ Sbjct: 161 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 216 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 217 AQNRRVEIQISPLRG 231 >gi|261854755|ref|YP_003262038.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261835224|gb|ACX94991.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 364 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD ++ PE+ L + ++L ++ + I GHTD + N +LS R Sbjct: 259 DGIFFDSGKALLKPESNPALDQAVQLLRQQASLKLLIAGHTDDT---GSHAANQKLSQQR 315 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 A + L+ G++ DR++ GF ASD + NRR++++ Sbjct: 316 AEAVRNALLARGIAADRLTA-QGFGSGVPLADNASDAGRAQNRRVELV 362 >gi|304321111|ref|YP_003854754.1| hypothetical protein PB2503_07784 [Parvularcula bermudensis HTCC2503] gi|303300013|gb|ADM09612.1| hypothetical protein PB2503_07784 [Parvularcula bermudensis HTCC2503] Length = 231 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAH 261 D + + E TG+ + + + F + PE L + +V+ Sbjct: 91 MDRQEQELRRELASTGVRVQRVGNDIRLIMPGNITFATGQASVRPEFYATLNSVAKVIER 150 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + GHTD+ N +LS+ RA S L GV+ RI I G+ + Sbjct: 151 YQQTAVLVEGHTDSV---GTEDSNVQLSIARAESVGNYLAAQGVAVPRIRAI-GYGESQP 206 Query: 321 KIAS--DPMNSANRRIDILVEDRQ 342 ++ D NRR++I + Q Sbjct: 207 VASNGTDSGRQQNRRVEIQLSPTQ 230 >gi|283787805|ref|YP_003367670.1| outer membrane protein [Citrobacter rodentium ICC168] gi|282951259|emb|CBG90953.1| putative outer membrane protein [Citrobacter rodentium ICC168] Length = 220 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N RLS RA S L+ GV RI + SG Sbjct: 142 PKTAVNVIGYTDST---GGQDLNMRLSQQRADSVASALITQGVEAGRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220 >gi|300719120|ref|YP_003743923.1| outer membrane protein [Erwinia billingiae Eb661] gi|299064956|emb|CAX62076.1| Putative outer membrane protein [Erwinia billingiae Eb661] Length = 220 Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR G I + N FD SSS P L + VL Sbjct: 83 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSSTLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R + LS RA S L+ GV+ +R+ + SG Sbjct: 142 PKTAVNVAGYTDSTGSRQLNMT---LSQQRADSVGSALITQGVAANRV-RTSGMGPDNPV 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220 >gi|320182069|gb|EFW56974.1| Outer membrane protein A precursor [Shigella boydii ATCC 9905] Length = 219 Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|89054158|ref|YP_509609.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88863707|gb|ABD54584.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 219 Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + +L E T +++++ +FD S+ L+ + L + + + GH Sbjct: 95 ERILIENTGEALILTL---PEGILFDVDSAAIRAGLQGDLRALAFNLNQYPDTRVVVEGH 151 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329 TD + A N LS RA + VL++ GV+ R+ + G + Sbjct: 152 TDNT---GSASYNQDLSTRRAQAVSGVLLEGGVAPFRVQSV-GRGESAPIATNLTPEGRQ 207 Query: 330 ANRRIDILVEDR 341 NRR+++++ + Sbjct: 208 QNRRVEVIIRPQ 219 >gi|170691988|ref|ZP_02883152.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170143272|gb|EDT11436.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 217 Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272 G I +Q + + FD +S P VL ++ + L + EVI+ + GHT Sbjct: 85 GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHT 144 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D++ N LS++RA S L + GV+ R+S G ++ ++ +A Sbjct: 145 DST---GQPAYNQTLSVNRAQSVTGYLAQRGVAPQRLSA-EGMGQNQPIADNNTEAGRAA 200 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 201 NRRVEIYL 208 >gi|293194231|ref|ZP_06609953.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces odontolyticus F0309] gi|292819750|gb|EFF78763.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces odontolyticus F0309] Length = 403 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G +I++ D +FD S PE L+ + VL ++ I GHTD+ + Sbjct: 284 GTVITLED---GVLFDFGKSDIRPEAAQTLKSLAGVLNNAKVPTAHIYGHTDSI---SDE 337 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333 N +LS +RA + L K GVS I +G+ + ++ + NRR Sbjct: 338 AFNLQLSQERADAVSAELKKDGVSA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 395 Query: 334 IDILV 338 ++I + Sbjct: 396 VEIFI 400 >gi|116253010|ref|YP_768848.1| OmpA family outer membrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257658|emb|CAK08755.1| putative OmpA family outer membrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 221 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + FD P L + VL I + Sbjct: 91 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKF-NRTLIDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 149 GHTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAG 204 Query: 328 NSANRRIDILV 338 + NRR++I + Sbjct: 205 RAQNRRVEIQI 215 >gi|257458255|ref|ZP_05623405.1| OmpA family protein [Treponema vincentii ATCC 35580] gi|257444365|gb|EEV19458.1| OmpA family protein [Treponema vincentii ATCC 35580] Length = 436 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + D + + + + I I++ D R F S+ LP+ L I E L Sbjct: 300 RDIEKFFLDREPESITVKAPKNIIKITMYDIR----FVADSAEILPDETGRLDVIAEALK 355 Query: 261 HS-TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I GHT R LSL RA + L K G+ R+ +G+ Sbjct: 356 KVGPNTHFLIEGHTANLNRPEGERI---LSLQRADKIAEELAKRGIEASRME-TAGYGAT 411 Query: 319 RLKIASDP--MNSANRRIDILVED 340 R +D + NRR++I + Sbjct: 412 RPIAPNDTAENRAKNRRVEITILR 435 >gi|149374667|ref|ZP_01892441.1| outer membrane protein; OmpA family [Marinobacter algicola DG893] gi|149361370|gb|EDM49820.1| outer membrane protein; OmpA family [Marinobacter algicola DG893] Length = 271 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 105/277 (37%), Gaps = 20/277 (7%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 N ++ S + + P+ +++ + E I + + G + ++L Sbjct: 5 NMTLGMAVSVSVLVAGCASTPQDNAKVDEARAAYEEIRNDPNVARSGDRQLRSAREQLSR 64 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 L++ +++ + + + + + + ++ E + Sbjct: 65 AESLLADGADIAEIEHAAYLANRHAQIAGEQGERAELQEQIDSAEARRKELELEMRADEA 124 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + AK++ + + A E T G+++++ D +FD + Sbjct: 125 AQARREAKELRLQMEAMQA---------EQTDRGMVLTLGD----VLFDLDKAELKSSGE 171 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++++ E +A + + G+TD++ A N LS RA + L++ G+S R Sbjct: 172 ATVRRLAEFMAEYENRRVRVEGYTDST---GEASYNQGLSERRAQAVSDTLIEMGISRTR 228 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + GF ++D NRR++I++ D +G Sbjct: 229 VE-TKGFGEQFPVASNDTSGGRQQNRRVEIVISDEEG 264 >gi|329114347|ref|ZP_08243109.1| Outer membrane protein [Acetobacter pomorum DM001] gi|326696423|gb|EGE48102.1| Outer membrane protein [Acetobacter pomorum DM001] Length = 376 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD S+ ++ + + H T I + G+TD A P + N LSL R Sbjct: 268 FFDWDKSVLTARARQIVAEAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNLGLSLRR 327 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A S L++ GV I + G+ + + P NRR++I++ Sbjct: 328 ADSVKAELIRDGVPASAID-VHGYGEAHPLVPTGPNTREPQNRRVEIIL 375 >gi|224417757|ref|ZP_03655763.1| motility protein MotB [Helicobacter canadensis MIT 98-5491] gi|253827100|ref|ZP_04869985.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491] gi|313141298|ref|ZP_07803491.1| motb protein [Helicobacter canadensis MIT 98-5491] gi|253510506|gb|EES89165.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491] gi|313130329|gb|EFR47946.1| motb protein [Helicobacter canadensis MIT 98-5491] Length = 256 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 18/195 (9%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G LE + + N P L+ ++ ++ ++D +S ++ N + Sbjct: 52 GSLEGTFAVLENGVKTQINPPAPILAT----PIEAQQEMEDATNIFASLITEYNEINKLA 107 Query: 214 G---VLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIR 269 V FE G++I I + +F+ S+ + L+++ E I+ Sbjct: 108 NGPAVEFEEAEEGVIIRI---PESLLFESGSATLTNSSGLAFLKRLTLEFDKLPETALIK 164 Query: 270 --GHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324 GHTD P R I DN LS+ R + ++++ G+S++R+ G ++ Sbjct: 165 AIGHTDNVPMRENPIFADNLELSIARGVNVAELIITEGISKERVLG-GGEGEFSPIASNK 223 Query: 325 -DPMNSANRRIDILV 338 + + NRR+D+ + Sbjct: 224 IPELRAKNRRVDLYI 238 >gi|154508489|ref|ZP_02044131.1| hypothetical protein ACTODO_00990 [Actinomyces odontolyticus ATCC 17982] gi|153798123|gb|EDN80543.1| hypothetical protein ACTODO_00990 [Actinomyces odontolyticus ATCC 17982] Length = 403 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G +I++ D +FD S PE L+ + VL ++ I GHTD+ + Sbjct: 284 GTVITLED---GVLFDFGKSDIRPEAAQTLKSLAGVLNNAKVPTAHIYGHTDSI---SDE 337 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333 N +LS +RA + L K GVS I +G+ + ++ + NRR Sbjct: 338 AFNLQLSQERADAVSAELKKDGVSA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 395 Query: 334 IDILV 338 ++I + Sbjct: 396 VEIFI 400 >gi|332665208|ref|YP_004447996.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332334022|gb|AEE51123.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 291 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 97/272 (35%), Gaps = 10/272 (3%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 G L S +N K ++ +NS D Q + + + Sbjct: 7 LGAALFLLSACGVSNKNVLAMEQSYKTEIGTLNEQLRNSRDEITRMQLQIAERKGENTAL 66 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + D + + L K + L ++ + + L ++ + K+ Sbjct: 67 LATQDKYLKRLDELEEELDKAQNQALTKQSSLGDALKAKNDQILSLENQIAAIRGALKQE 126 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIV 250 L+ L ++I+ +A V E I++++ + +F S+ P Sbjct: 127 LETL-QQIAKEFQDSLAKFPVAQYSVEVRNGKIVLALTES---LLFKSGVSNRIEPNGQA 182 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDR 308 L+ IG +L + + I + GHTD D+W + RA + + L+ + +R Sbjct: 183 ALKAIGTLLNANPVLLIQVLGHTDNQAASRKNLDSWDFTSLRAATVVRSLIDTHDLGANR 242 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + G +++ S NRR+++ + Sbjct: 243 VIS-GGRGEFDPITSNETSEGQSRNRRVELSL 273 >gi|315605260|ref|ZP_07880306.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp. oral taxon 180 str. F0310] gi|315313077|gb|EFU61148.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp. oral taxon 180 str. F0310] Length = 401 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281 G +I++ D +FD S P+ L + VL ++ + I GHTD+ + Sbjct: 282 GTVITLEDS---ILFDFGKSDIRPDAAQTLSTLATVLNNAKVPAAHIYGHTDSV---SDE 335 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333 N +LS DRA + L K+GV+ +G+ + ++ + NRR Sbjct: 336 AFNQKLSEDRANAVMNDLSKNGVTAT--LDATGYGETKPVAPNENPDGSDNPAGRALNRR 393 Query: 334 IDILV 338 ++I + Sbjct: 394 VEIYI 398 >gi|311697206|gb|ADQ00078.1| secreted protein containing outer membrane protein, OmpA/MotB, C-terminal domain [marine bacterium HP15] Length = 366 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 101/300 (33%), Gaps = 27/300 (9%) Query: 48 FLVMWIINATDDDTKKAIEQY--FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 F V+ + + +T+ F + K P + + D+ +D+ Sbjct: 72 FSVLLQGSYAEPETRTQNLDTELFRGSLGARLHPGKFRLGGWRPFGGAGYSYTDIDVDQG 131 Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK---GKDLCKSTD 162 K + + Q+ R + ++ E + G++ + Sbjct: 132 GGKTEDAIYLEGGFQRMVAPRFMIETGVRARTELEEGYVDGQYFAGIHYLFGREFPAAPK 191 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++ + + P + + DL K + + LV + L + + Sbjct: 192 PVVAVQPKPEPVVRPPMDTDGDGV-----IDDLDKCPDTPMGALVDSDGCPKELTKDIKE 246 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 + + FD + P+ + ++ +VL I + GHTD++ A Sbjct: 247 TLYVE---------FDLDKTEVKPQFYPEIGELAKVLKQYPTSTILLEGHTDST---GSA 294 Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N +LS RA + +VL+ + RI +G + ++ + NRR++ +V Sbjct: 295 SYNQQLSKSRADAVMKVLIDRFSIPSTRI-STTGMGESQPIASNATVEGRAQNRRVEAIV 353 >gi|281179819|dbj|BAI56149.1| conserved hypothetical protein [Escherichia coli SE15] Length = 550 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D + T + + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRAIRDWRPPEQKMDVTAS-LPVQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|152993615|ref|YP_001359336.1| hypothetical protein SUN_2037 [Sulfurovum sp. NBC37-1] gi|151425476|dbj|BAF72979.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 232 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 9/152 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ D+A+ + + ++ + + G + I+ R+ MF SS Sbjct: 75 QQANDIARSLGTGVNNDPLAYLDPNQDLIVSNNGRYVKIM-FRDRMMFPTGSSRLTSSAS 133 Query: 250 VVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + K+G++L + I + G TD R N+RLS +RA + L + G++ Sbjct: 134 YKVGKVGKILREYPQTIVQVAGFTDD---RGGYDYNYRLSRNRAKTVSDRLYREGINNP- 189 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338 S ++G ++++ + ++ + NRR++I + Sbjct: 190 -SYVTGCSYNKPLVPNNSERNMALNRRVEIYL 220 >gi|258541881|ref|YP_003187314.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01] gi|256632959|dbj|BAH98934.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01] gi|256636016|dbj|BAI01985.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-03] gi|256639071|dbj|BAI05033.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-07] gi|256642125|dbj|BAI08080.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-22] gi|256645180|dbj|BAI11128.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-26] gi|256648235|dbj|BAI14176.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-32] gi|256651288|dbj|BAI17222.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654279|dbj|BAI20206.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-12] Length = 375 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD S+ ++ + + H T I + G+TD A P + N LSL R Sbjct: 267 FFDWDKSVLTARARQIVAEAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNLGLSLRR 326 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A S L++ GV I + G+ + + P NRR++I++ Sbjct: 327 ADSVKAELIRDGVPASAID-VHGYGEAHPLVPTGPNTREPQNRRVEIIL 374 >gi|146339724|ref|YP_001204772.1| putative Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Bradyrhizobium sp. ORS278] gi|146192530|emb|CAL76535.1| Conserved hypothetical protein; Putative Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Bradyrhizobium sp. ORS278] Length = 707 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLD 290 + F S+ E++ +L I +V I+I GHTD DN LS Sbjct: 601 KGRIRFATGSAELSRESLALLDHIVDVAQRCKEAEITIEGHTDNV---GNEADNIDLSKR 657 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 RA + + ++G+ R+S G+ +R ++D + NRRI+ +V+ Sbjct: 658 RAAAVVSYISEAGIDTSRMSS-EGYGQNRPVASNDSAEGRAQNRRIEFVVK 707 >gi|220921336|ref|YP_002496637.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945942|gb|ACL56334.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 178 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S P L + + L + + GHTDA R N LS RA Sbjct: 76 FEYNSDALTPAAKQNLDEFAKALQDARLRSASFVVEGHTDA---RGGEEFNLGLSTRRAD 132 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + L GV + +++ GF R DP++ ANRR++ Sbjct: 133 AVVKYLSGRGVPQGQLTA-RGFGKSRPL-TDDPLDPANRRVE 172 >gi|241663775|ref|YP_002982135.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12D] gi|240865802|gb|ACS63463.1| OmpA/MotB domain protein [Ralstonia pickettii 12D] Length = 209 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S++ P L + + L E ++ GHTD++ N LS RA S Sbjct: 104 FDTDSAVIKPSFRGPLDSVAQTLTQHPELAANVVGHTDST---GNPNYNMTLSQKRAQSV 160 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L GV+ +R+S G ++ A++ + NRR++I ++ QG Sbjct: 161 ASYLTDRGVARNRLSA-EGRGQNQPVADNATEAGRAQNRRVEIYLKPIQG 209 >gi|197116453|ref|YP_002136880.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] gi|197085813|gb|ACH37084.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] Length = 333 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ L+ + + L +I GHTD+ N +LS RA S Sbjct: 229 FDTNKSDIKPQYHDELKALADFLKEFPNATGTIEGHTDSV---GDKAANMKLSQRRADSV 285 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 + L+ G++ +R+ + G+ + + NRRI+ Sbjct: 286 RKYLVDKFGIAPERVKAV-GYGPTKPAADNKTAAGKQKNRRIE 327 >gi|153875874|ref|ZP_02003478.1| OmpA/MotB [Beggiatoa sp. PS] gi|152067662|gb|EDN66522.1| OmpA/MotB [Beggiatoa sp. PS] Length = 263 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 24/248 (9%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 T + + GS K E Y + ++K + ++ + + Sbjct: 20 ATISGLTTSCGSNISKNDGILKEARDTYAVAAAYESSANLEALSKAKKALENAENAETVE 79 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-- 223 I +A ++K + L + +S + + + + V Sbjct: 80 EIKHFAYLAKQQAQIAISIAERQKTERERLVGQKNSRIDKPILETQQQSVSINPQLEKQL 139 Query: 224 ----------ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + I++ + +F+ + ++ + L ISI GHT Sbjct: 140 NNWQQRQTGRLTITLNE-----VFENDRTDLSQTAQSDIKTLAAFLKQHPYFRISIEGHT 194 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D + N LS RA S LM G++ RI+ + GF R + Sbjct: 195 DNAGIHTH---NLGLSERRATSVKFALMNDGITSKRIT-VKGFGETRPIGSNRTQQGRQK 250 Query: 331 NRRIDILV 338 NRR++I++ Sbjct: 251 NRRVEIII 258 >gi|197106951|ref|YP_002132328.1| OmpA family protein [Phenylobacterium zucineum HLK1] gi|196480371|gb|ACG79899.1| OmpA family protein [Phenylobacterium zucineum HLK1] Length = 221 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E R G I + + F S VL I L+ + I + GH D++ Sbjct: 97 VEVERRGDDIVLN-MPSDVTFGVDQSDVQSRFYPVLDDIAATLSRYPQTLIDVAGHADST 155 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N LS RA S L+ GV +DR+ + G+ R A++ + NRR Sbjct: 156 ---GADAYNQALSERRASSVASYLVSRGVLQDRLY-VVGYGESRPVASNATEQGRAQNRR 211 Query: 334 IDILVEDRQG 343 ++I V +G Sbjct: 212 VEITVRPFRG 221 >gi|126739844|ref|ZP_01755535.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6] gi|126719076|gb|EBA15787.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6] Length = 791 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 16/250 (6%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 ++ + NQ+ R + + G+DL + Sbjct: 538 SEQDAKTVKAQRETALLNQQVAALRQQLGSLQAILDDYEARDAAQRVQLQNLGQDLNAAL 597 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 S + K + + + L ++ + + Sbjct: 598 ARAASEERRRRLLEEKERKRLEAEAAALASKAEELENKAQDLERYRSEFFGRLRDVLGKQ 657 Query: 222 TGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--------AHSTEVISIRGH 271 G+ I + +F S+ + K+ ++L A +I + GH Sbjct: 658 EGVRIEGDRFVFASEVLFPPGSADLSAAGQAEIGKVAQILQSVVVEIPAEINWIIRVDGH 717 Query: 272 TDASPF--RNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP-- 326 TD + DNW LS RA S + ++++ G+ R++ +GF + ++D Sbjct: 718 TDNTTMLGHPKYSDNWELSQGRALSVVRYMIENLGIPPGRLAA-NGFGEFQPVNSADTPE 776 Query: 327 MNSANRRIDI 336 + NRRI++ Sbjct: 777 ARAQNRRIEL 786 >gi|253771615|ref|YP_003034446.1| outer membrane lipoprotein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163475|ref|YP_003046583.1| putative outer membrane lipoprotein [Escherichia coli B str. REL606] gi|297520666|ref|ZP_06939052.1| putative outer membrane lipoprotein [Escherichia coli OP50] gi|300928223|ref|ZP_07143762.1| OmpA family protein [Escherichia coli MS 187-1] gi|242379069|emb|CAQ33870.1| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)] gi|253322659|gb|ACT27261.1| OmpA/MotB domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975376|gb|ACT41047.1| predicted outer membrane lipoprotein [Escherichia coli B str. REL606] gi|253979532|gb|ACT45202.1| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)] gi|300463768|gb|EFK27261.1| OmpA family protein [Escherichia coli MS 187-1] Length = 219 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|163794140|ref|ZP_02188113.1| hypothetical protein BAL199_01964 [alpha proteobacterium BAL199] gi|159180754|gb|EDP65273.1| hypothetical protein BAL199_01964 [alpha proteobacterium BAL199] Length = 250 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 RL L +++ LSG D +++ ++I++ + +F+ + Sbjct: 98 RLSYLEPLLTAKLSG---DPVLRTARIVRAGDRLIITL---PSDLLFEAGQARLSTTARS 151 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDR 308 + ++ L I + GH D P A N LSL RA + L+ +G+S R Sbjct: 152 AVAELATALVTLPNRIDVVGHADPRPIPPGAPFGTNRALSLARADAVAVALVDAGLS--R 209 Query: 309 ISKISGFAHHR--LKIASDPMNSA---NRRIDILVEDRQG 343 + + G R + PM RR+D+++ + Sbjct: 210 MPTVEGMGDSRFYTIAPTAPMERRYALARRVDVVLFPERA 249 Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 18/49 (36%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQY 68 SW + D +++++AFF++ + + + + Sbjct: 18 GRRAGRKYGGGPSWLVTLVDLVSLMLAFFVMRFAMTSIESPRFDEAAAS 66 >gi|194430954|ref|ZP_03063247.1| OmpA family protein [Shigella dysenteriae 1012] gi|194420409|gb|EDX36485.1| OmpA family protein [Shigella dysenteriae 1012] gi|332085980|gb|EGI91144.1| inner membrane lipoprotein yiaD [Shigella dysenteriae 155-74] Length = 219 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|90416505|ref|ZP_01224436.1| ompA family protein [marine gamma proteobacterium HTCC2207] gi|90331704|gb|EAS46932.1| ompA family protein [marine gamma proteobacterium HTCC2207] Length = 220 Score = 82.6 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 15/199 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G+ T + SI + L + + KR KR+ LA G D Sbjct: 28 GEQKTTKTAIGASIGAGVGAVVAYLDNKDEDSRKRNKRI--LAAAGGGAAIGYYMDAQEA 85 Query: 214 GVLFETTRTGILISII-DQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266 + + +G+ + + D N M F +S+ VL + VL + + Sbjct: 86 KLRQQLRGSGVSVERVGDNINLIMPGNITFASNSADINASFYSVLDSVALVLEEYDKTLV 145 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + GHTD+ A N LS RA S L+ + R+ + GF + +D Sbjct: 146 VVAGHTDSD---GGAAFNEDLSERRAQSVSGYLVSQSILPIRLETV-GFGERQPIAGNDS 201 Query: 327 MNSA--NRRIDILVEDRQG 343 NRR++I + G Sbjct: 202 AAGKQLNRRVEITLLPIAG 220 >gi|260574860|ref|ZP_05842862.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259022865|gb|EEW26159.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 218 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 18/204 (8%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + + G + + + L + ++ L A + Sbjct: 27 PDDPQARTRNGAVAGALIGGTLGATQHGRNRFGNALLGATLGGLVGGAIGNTLDQQAADL 86 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S +S + T +++++ +F S+ P+ L+ + L Sbjct: 87 RSQMSN--------STMVTNTGNSLVVTM---PQDILFALDSANLRPDLQADLRAVSNNL 135 Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I + GHTD A N LS RA + VL GV RIS G Sbjct: 136 LDYPDSTIEVVGHTDD---SGSAAYNQDLSERRARAVAAVLRNGGVPGGRISA-YGRGED 191 Query: 319 RLKIASDP--MNSANRRIDILVED 340 + ++ + NRR++I++ Sbjct: 192 QPIASNQTVNGRAQNRRVEIIIHP 215 >gi|238799328|ref|ZP_04642769.1| hypothetical protein ymoll0001_24410 [Yersinia mollaretii ATCC 43969] gi|238716817|gb|EEQ08692.1| hypothetical protein ymoll0001_24410 [Yersinia mollaretii ATCC 43969] Length = 574 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S T V++ + + A +I + GHTD ++ N LSL RA Sbjct: 442 SLFDVGKSELKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDSQSNQILSLKRAE 498 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + +G + + G+ R ++D + NRR++I + + Sbjct: 499 SVRNWMRDTGDIPESCFAVQGYGQSRPLKSNDTEAGRALNRRVEISLVPQ 548 >gi|238790227|ref|ZP_04634002.1| hypothetical protein yfred0001_31620 [Yersinia frederiksenii ATCC 33641] gi|238721670|gb|EEQ13335.1| hypothetical protein yfred0001_31620 [Yersinia frederiksenii ATCC 33641] Length = 575 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD SI T V++ + + A +I + GHTD ++ N LSL RA Sbjct: 443 SLFDVGQSILKSGSTKVLINALVGIKAKPGWLIVVAGHTD---ITGDSQSNQILSLKRAE 499 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 S + +G + + G+ R ++D + NRR++I + + Sbjct: 500 SVRNWMRDTGDIPESCFAVQGYGESRPLKSNDTEAGRALNRRVEISLVPQ 549 >gi|301063232|ref|ZP_07203781.1| OmpA family protein [delta proteobacterium NaphS2] gi|300442660|gb|EFK06876.1| OmpA family protein [delta proteobacterium NaphS2] Length = 214 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S PE+ +L+++G+ LA +I I GHTD+ + N RLSLDRA Sbjct: 108 FDVNSYTIRPESYNLLRELGKALADPRLRDRIIIINGHTDSD---GKEKYNVRLSLDRAA 164 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 + L+ GV+ DR+ + G+ + + NRR++I+ E + Sbjct: 165 AVKTYLIDHCGVAPDRLE-VVGYGESMPLTPNTSKENKQLNRRVEIVAEKK 214 >gi|332283816|ref|YP_004415727.1| OmpA/MotB domain protein [Pusillimonas sp. T7-7] gi|330427769|gb|AEC19103.1| OmpA/MotB domain protein [Pusillimonas sp. T7-7] Length = 223 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L L + R ++ ++IS L +A + +G + I I + + Sbjct: 41 QLELSAKLEEEVLHRQEETQRRIS--LEQALARPLAEGSVTLIDG---RIGIS---GSVL 92 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIAR---DNWRLSL 289 F +S+ E VL+ + L+ +++ + G TD R DNW LS Sbjct: 93 FALNSAQLQAEGHDVLESLVAPLSDYLQSHDQILMVSGFTDDQQVLQGNRRFDDNWDLSA 152 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDI 336 RA + + L+ +G+ + + A + A + + NRR++I Sbjct: 153 QRALTVTRALIAAGIPSSSVFAAAFGAEQPVASNADEQGRAKNRRVEI 200 >gi|256830501|ref|YP_003159229.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579677|gb|ACU90813.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 260 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 18/144 (12%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K + FE+ R +SI +F S+ +L ++ V+ S+ + + GHT Sbjct: 84 KDLRFESNRFMQRLSIGAD---ALFAPGSADLTAGGRSLLDRLRPVVMESSHPLGLSGHT 140 Query: 273 D-----------ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A P+ + W LSL R + Y+ +++GV +++ ++ F R + Sbjct: 141 SEGMDEFGPDYLAKPWIKVDFS-WELSLARVMAVYKYFIETGVEPEKL-RLEAFGRFRPR 198 Query: 322 IASDP--MNSANRRIDILVEDRQG 343 + ++ NRR++I ++ R G Sbjct: 199 LTTEAPGERQTNRRVEITLDRRVG 222 Score = 44.1 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 56/153 (36%), Gaps = 10/153 (6%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERS 93 I ++D +T++M FF+V+ + + D K+ + T + + D R+ Sbjct: 1 MITFSDLVTLMMTFFIVLVSMASLTDIYKRKVA--IGSVSGTFGTGAPSMNDLTTVDTRT 58 Query: 94 SQNKIDLSIDEHITK--------NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 + +++ + ++ DL+ S ++ + +F ++ + ++ Sbjct: 59 QVDPGPINVFKDLSPVRDHLWEDPDKDLRFESNRFMQRLSIGADALFAPGSADLTAGGRS 118 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 L R + L ++ + F P Sbjct: 119 LLDRLRPVVMESSHPLGLSGHTSEGMDEFGPDY 151 >gi|163759606|ref|ZP_02166691.1| OmpA/MotB [Hoeflea phototrophica DFL-43] gi|162283203|gb|EDQ33489.1| OmpA/MotB [Hoeflea phototrophica DFL-43] Length = 215 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD S P+ L + VL + + G Sbjct: 87 LQGTGVSVTRVGDKI-ILNMPSNITFDSDQSAVKPQFYETLNSVALVLQKFNRSLVDVAG 145 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 HTD++ N LS RA S L+ G R GF R + D Sbjct: 146 HTDST---GSDSYNLTLSQQRAQSVSSYLISQGNDARRFY-TQGFGESRPIADNGTDAGR 201 Query: 329 SANRRIDILV 338 +ANRR++I + Sbjct: 202 AANRRVEIQI 211 >gi|320173827|gb|EFW49008.1| putative outer membrane lipoprotein [Shigella dysenteriae CDC 74-1112] Length = 195 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 59 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 117 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 118 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 173 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 174 ASNSTAEGKAQNRRVEITL 192 >gi|149185339|ref|ZP_01863656.1| outer membrane protein [Erythrobacter sp. SD-21] gi|148831450|gb|EDL49884.1| outer membrane protein [Erythrobacter sp. SD-21] Length = 210 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 10/148 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + L G+ T G I +++ + F S+ L + Sbjct: 55 RMDQQIKELEEQTAGSGIDVSETDGGNAI-LVNLPDGVTFATGSATINSAFRNTLDNVAA 113 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L I + G+TD + N RLS RA + L+ GVS RI + G+ Sbjct: 114 NLVQYPNSLIDVYGYTDTT---GSDSLNQRLSEQRAQAVANYLISRGVSSSRI-RWQGYG 169 Query: 317 HH----RLKIASDPMNSANRRIDILVED 340 ++K A NRR++I + Sbjct: 170 EQYEHLKVKTADGVNEPMNRRVEIKIIP 197 >gi|62290115|ref|YP_221908.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941] gi|82700038|ref|YP_414612.1| outer membrane protein MotY [Brucella melitensis biovar Abortus 2308] gi|189024353|ref|YP_001935121.1| outer membrane protein [Brucella abortus S19] gi|254689424|ref|ZP_05152678.1| Bacterial outer membrane protein [Brucella abortus bv. 6 str. 870] gi|254697559|ref|ZP_05159387.1| Bacterial outer membrane protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730453|ref|ZP_05189031.1| Bacterial outer membrane protein [Brucella abortus bv. 4 str. 292] gi|256257670|ref|ZP_05463206.1| Bacterial outer membrane protein [Brucella abortus bv. 9 str. C68] gi|260546663|ref|ZP_05822402.1| bacterial outer membrane protein [Brucella abortus NCTC 8038] gi|260754947|ref|ZP_05867295.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758163|ref|ZP_05870511.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260761989|ref|ZP_05874332.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|62196247|gb|AAX74547.1| OmpA family protein [Brucella abortus bv. 1 str. 9-941] gi|82616139|emb|CAJ11182.1| MotY protein:Bacterial outer membrane protein:OmpA/MotB domain [Brucella melitensis biovar Abortus 2308] gi|189019925|gb|ACD72647.1| Bacterial outer membrane protein [Brucella abortus S19] gi|260095713|gb|EEW79590.1| bacterial outer membrane protein [Brucella abortus NCTC 8038] gi|260668481|gb|EEX55421.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672421|gb|EEX59242.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675055|gb|EEX61876.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 6 str. 870] Length = 220 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 90 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + +++ Sbjct: 149 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 204 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 205 AQNRRVEIQISPLRG 219 >gi|146308382|ref|YP_001188847.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145576583|gb|ABP86115.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 261 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + NN L + QS T+++++ + +E+ K+ Sbjct: 21 SHQPNANLESARNNFSTLQSDPQSNKLAALETKEAQEWLNKADKAYMERDDEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRAAENELKNTSAQRAKALLDARDAQIRKLQDSLNAKQTERGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + + ++ L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKAELKSSALPNVTQLARFLQENPERQVIVEGYTDSV---GSASYNQG 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS RA S + L+++GV RI G+ +SD + NRR+++ + + Sbjct: 194 LSERRAESVRRALIRAGVEPTRIVA-QGYGKEYPVADNSSDSGRAQNRRVEVTISN 248 >gi|15804098|ref|NP_290137.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 EDL933] gi|15833691|ref|NP_312464.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. Sakai] gi|26250192|ref|NP_756232.1| putative outer membrane lipoprotein [Escherichia coli CFT073] gi|49176370|ref|YP_026228.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr. MG1655] gi|89110462|ref|AP_004242.1| predicted outer membrane lipoprotien [Escherichia coli str. K-12 substr. W3110] gi|110643800|ref|YP_671530.1| putative outer membrane lipoprotein [Escherichia coli 536] gi|157158823|ref|YP_001465027.1| putative outer membrane lipoprotein [Escherichia coli E24377A] gi|157163027|ref|YP_001460345.1| putative outer membrane lipoprotein [Escherichia coli HS] gi|168746904|ref|ZP_02771926.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113] gi|168753370|ref|ZP_02778377.1| OmpA family protein [Escherichia coli O157:H7 str. EC4401] gi|168759642|ref|ZP_02784649.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501] gi|168765965|ref|ZP_02790972.1| OmpA family protein [Escherichia coli O157:H7 str. EC4486] gi|168772488|ref|ZP_02797495.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196] gi|168779701|ref|ZP_02804708.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076] gi|168785422|ref|ZP_02810429.1| OmpA family protein [Escherichia coli O157:H7 str. EC869] gi|168797388|ref|ZP_02822395.1| OmpA family protein [Escherichia coli O157:H7 str. EC508] gi|170018219|ref|YP_001723173.1| putative outer membrane lipoprotein [Escherichia coli ATCC 8739] gi|170083060|ref|YP_001732380.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr. DH10B] gi|170680831|ref|YP_001745838.1| putative outer membrane lipoprotein [Escherichia coli SMS-3-5] gi|170766985|ref|ZP_02901438.1| OmpA family protein [Escherichia albertii TW07627] gi|188495948|ref|ZP_03003218.1| OmpA family protein [Escherichia coli 53638] gi|191165316|ref|ZP_03027159.1| OmpA family protein [Escherichia coli B7A] gi|191170332|ref|ZP_03031885.1| OmpA family protein [Escherichia coli F11] gi|193061844|ref|ZP_03042941.1| OmpA family protein [Escherichia coli E22] gi|193068535|ref|ZP_03049497.1| OmpA family protein [Escherichia coli E110019] gi|194427518|ref|ZP_03060067.1| OmpA family protein [Escherichia coli B171] gi|194435666|ref|ZP_03067769.1| OmpA family protein [Escherichia coli 101-1] gi|195935083|ref|ZP_03080465.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. EC4024] gi|208808020|ref|ZP_03250357.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206] gi|208812888|ref|ZP_03254217.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045] gi|208819372|ref|ZP_03259692.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042] gi|209400986|ref|YP_002273038.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115] gi|209921016|ref|YP_002295100.1| putative outer membrane lipoprotein [Escherichia coli SE11] gi|215488837|ref|YP_002331268.1| putative outer membrane lipoprotein [Escherichia coli O127:H6 str. E2348/69] gi|217326256|ref|ZP_03442340.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588] gi|218556112|ref|YP_002389025.1| putative outer membrane lipoprotein [Escherichia coli IAI1] gi|218691843|ref|YP_002400055.1| putative outer membrane lipoprotein [Escherichia coli ED1a] gi|218697269|ref|YP_002404936.1| putative outer membrane lipoprotein [Escherichia coli 55989] gi|218702317|ref|YP_002409946.1| putative outer membrane lipoprotein [Escherichia coli IAI39] gi|218707187|ref|YP_002414706.1| putative outer membrane lipoprotein [Escherichia coli UMN026] gi|227883718|ref|ZP_04001523.1| outer membrane lipoprotein [Escherichia coli 83972] gi|238902640|ref|YP_002928436.1| putative outer membrane lipoprotein [Escherichia coli BW2952] gi|254795509|ref|YP_003080346.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14359] gi|256020901|ref|ZP_05434766.1| putative outer membrane lipoprotein [Shigella sp. D9] gi|256025721|ref|ZP_05439586.1| putative outer membrane lipoprotein [Escherichia sp. 4_1_40B] gi|260846733|ref|YP_003224511.1| putative outer membrane lipoprotein [Escherichia coli O103:H2 str. 12009] gi|260858052|ref|YP_003231943.1| putative outer membrane lipoprotein [Escherichia coli O26:H11 str. 11368] gi|260870283|ref|YP_003236685.1| putative outer membrane lipoprotein [Escherichia coli O111:H- str. 11128] gi|261224871|ref|ZP_05939152.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. FRIK2000] gi|261254230|ref|ZP_05946763.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. FRIK966] gi|291284929|ref|YP_003501747.1| Inner membrane lipoprotein yiaD precursor [Escherichia coli O55:H7 str. CB9615] gi|293407175|ref|ZP_06651099.1| outer membrane lipoprotein [Escherichia coli FVEC1412] gi|293417001|ref|ZP_06659638.1| outer membrane lipoprotein [Escherichia coli B185] gi|293453862|ref|ZP_06664281.1| outer membrane lipoprotein [Escherichia coli B088] gi|298382924|ref|ZP_06992519.1| outer membrane lipoprotein [Escherichia coli FVEC1302] gi|300815222|ref|ZP_07095447.1| OmpA family protein [Escherichia coli MS 107-1] gi|300822046|ref|ZP_07102189.1| OmpA family protein [Escherichia coli MS 119-7] gi|300898736|ref|ZP_07117047.1| OmpA family protein [Escherichia coli MS 198-1] gi|300920432|ref|ZP_07136866.1| OmpA family protein [Escherichia coli MS 115-1] gi|300925626|ref|ZP_07141493.1| OmpA family protein [Escherichia coli MS 182-1] gi|300937157|ref|ZP_07152011.1| OmpA family protein [Escherichia coli MS 21-1] gi|300971377|ref|ZP_07171446.1| OmpA family protein [Escherichia coli MS 45-1] gi|300976951|ref|ZP_07173686.1| OmpA family protein [Escherichia coli MS 200-1] gi|301026191|ref|ZP_07189658.1| OmpA family protein [Escherichia coli MS 69-1] gi|301028182|ref|ZP_07191452.1| OmpA family protein [Escherichia coli MS 196-1] gi|301304604|ref|ZP_07210713.1| OmpA family protein [Escherichia coli MS 124-1] gi|301646016|ref|ZP_07245922.1| OmpA family protein [Escherichia coli MS 146-1] gi|307140242|ref|ZP_07499598.1| putative outer membrane lipoprotein [Escherichia coli H736] gi|307314313|ref|ZP_07593920.1| OmpA/MotB domain protein [Escherichia coli W] gi|309796193|ref|ZP_07690604.1| OmpA family protein [Escherichia coli MS 145-7] gi|312968105|ref|ZP_07782316.1| inner membrane lipoprotein yiaD [Escherichia coli 2362-75] gi|312972173|ref|ZP_07786347.1| inner membrane lipoprotein yiaD [Escherichia coli 1827-70] gi|331644263|ref|ZP_08345392.1| inner membrane lipoprotein YiaD [Escherichia coli H736] gi|331655189|ref|ZP_08356188.1| inner membrane lipoprotein YiaD [Escherichia coli M718] gi|331659868|ref|ZP_08360806.1| inner membrane lipoprotein YiaD [Escherichia coli TA206] gi|331665175|ref|ZP_08366076.1| inner membrane lipoprotein YiaD [Escherichia coli TA143] gi|331670386|ref|ZP_08371225.1| inner membrane lipoprotein YiaD [Escherichia coli TA271] gi|331675043|ref|ZP_08375800.1| inner membrane lipoprotein YiaD [Escherichia coli TA280] gi|331679633|ref|ZP_08380303.1| inner membrane lipoprotein YiaD [Escherichia coli H591] gi|331685215|ref|ZP_08385801.1| inner membrane lipoprotein YiaD [Escherichia coli H299] gi|332282119|ref|ZP_08394532.1| OmpA family protein [Shigella sp. D9] gi|54042327|sp|P37665|YIAD_ECOLI RecName: Full=Inner membrane lipoprotein yiaD; Flags: Precursor gi|12518287|gb|AAG58701.1|AE005582_4 putative outer membrane protein [Escherichia coli O157:H7 str. EDL933] gi|26110621|gb|AAN82806.1|AE016768_224 Hypothetical lipoprotein yiaD precursor [Escherichia coli CFT073] gi|13363911|dbj|BAB37860.1| putative outer membrane protein [Escherichia coli O157:H7 str. Sakai] gi|48994946|gb|AAT48190.1| outer membrane lipoprotein [Escherichia coli str. K-12 substr. MG1655] gi|85676493|dbj|BAE77743.1| predicted outer membrane lipoprotien [Escherichia coli str. K12 substr. W3110] gi|110345392|gb|ABG71629.1| putative outer membrane lipoprotein [Escherichia coli 536] gi|157068707|gb|ABV07962.1| OmpA family protein [Escherichia coli HS] gi|157080853|gb|ABV20561.1| OmpA family protein [Escherichia coli E24377A] gi|169753147|gb|ACA75846.1| OmpA/MotB domain protein [Escherichia coli ATCC 8739] gi|169890895|gb|ACB04602.1| predicted outer membrane lipoprotein [Escherichia coli str. K-12 substr. DH10B] gi|170124423|gb|EDS93354.1| OmpA family protein [Escherichia albertii TW07627] gi|170518549|gb|ACB16727.1| OmpA family protein [Escherichia coli SMS-3-5] gi|187771758|gb|EDU35602.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196] gi|188018309|gb|EDU56431.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113] gi|188491147|gb|EDU66250.1| OmpA family protein [Escherichia coli 53638] gi|189002241|gb|EDU71227.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076] gi|189358800|gb|EDU77219.1| OmpA family protein [Escherichia coli O157:H7 str. EC4401] gi|189364720|gb|EDU83139.1| OmpA family protein [Escherichia coli O157:H7 str. EC4486] gi|189369665|gb|EDU88081.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501] gi|189374556|gb|EDU92972.1| OmpA family protein [Escherichia coli O157:H7 str. EC869] gi|189380056|gb|EDU98472.1| OmpA family protein [Escherichia coli O157:H7 str. EC508] gi|190904718|gb|EDV64424.1| OmpA family protein [Escherichia coli B7A] gi|190909140|gb|EDV68726.1| OmpA family protein [Escherichia coli F11] gi|192932634|gb|EDV85231.1| OmpA family protein [Escherichia coli E22] gi|192958186|gb|EDV88627.1| OmpA family protein [Escherichia coli E110019] gi|194414558|gb|EDX30831.1| OmpA family protein [Escherichia coli B171] gi|194425209|gb|EDX41193.1| OmpA family protein [Escherichia coli 101-1] gi|208727821|gb|EDZ77422.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206] gi|208734165|gb|EDZ82852.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045] gi|208739495|gb|EDZ87177.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042] gi|209162386|gb|ACI39819.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115] gi|209755238|gb|ACI75931.1| putative outer membrane protein [Escherichia coli] gi|209755240|gb|ACI75932.1| putative outer membrane protein [Escherichia coli] gi|209755242|gb|ACI75933.1| putative outer membrane protein [Escherichia coli] gi|209755244|gb|ACI75934.1| putative outer membrane protein [Escherichia coli] gi|209755246|gb|ACI75935.1| putative outer membrane protein [Escherichia coli] gi|209914275|dbj|BAG79349.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266909|emb|CAS11352.1| predicted outer membrane lipoprotien [Escherichia coli O127:H6 str. E2348/69] gi|217322477|gb|EEC30901.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588] gi|218354001|emb|CAV00488.1| putative outer membrane lipoprotien [Escherichia coli 55989] gi|218362880|emb|CAR00514.1| putative outer membrane lipoprotien [Escherichia coli IAI1] gi|218372303|emb|CAR20168.1| putative outer membrane lipoprotien [Escherichia coli IAI39] gi|218429407|emb|CAR10226.1| putative outer membrane lipoprotien [Escherichia coli ED1a] gi|218434284|emb|CAR15206.1| putative outer membrane lipoprotien [Escherichia coli UMN026] gi|227839298|gb|EEJ49764.1| outer membrane lipoprotein [Escherichia coli 83972] gi|238862715|gb|ACR64713.1| predicted outer membrane lipoprotein [Escherichia coli BW2952] gi|254594909|gb|ACT74270.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14359] gi|257756701|dbj|BAI28203.1| predicted outer membrane lipoprotein [Escherichia coli O26:H11 str. 11368] gi|257761880|dbj|BAI33377.1| predicted outer membrane lipoprotein [Escherichia coli O103:H2 str. 12009] gi|257766639|dbj|BAI38134.1| predicted outer membrane lipoprotein [Escherichia coli O111:H- str. 11128] gi|260447432|gb|ACX37854.1| OmpA/MotB domain protein [Escherichia coli DH1] gi|284923586|emb|CBG36682.1| putative outer membrane protein [Escherichia coli 042] gi|290764802|gb|ADD58763.1| Inner membrane lipoprotein yiaD precursor [Escherichia coli O55:H7 str. CB9615] gi|291321988|gb|EFE61419.1| outer membrane lipoprotein [Escherichia coli B088] gi|291425986|gb|EFE99020.1| outer membrane lipoprotein [Escherichia coli FVEC1412] gi|291431577|gb|EFF04562.1| outer membrane lipoprotein [Escherichia coli B185] gi|298276760|gb|EFI18278.1| outer membrane lipoprotein [Escherichia coli FVEC1302] gi|299878738|gb|EFI86949.1| OmpA family protein [Escherichia coli MS 196-1] gi|300308421|gb|EFJ62941.1| OmpA family protein [Escherichia coli MS 200-1] gi|300357615|gb|EFJ73485.1| OmpA family protein [Escherichia coli MS 198-1] gi|300395632|gb|EFJ79170.1| OmpA family protein [Escherichia coli MS 69-1] gi|300411301|gb|EFJ94839.1| OmpA family protein [Escherichia coli MS 45-1] gi|300412565|gb|EFJ95875.1| OmpA family protein [Escherichia coli MS 115-1] gi|300418280|gb|EFK01591.1| OmpA family protein [Escherichia coli MS 182-1] gi|300457770|gb|EFK21263.1| OmpA family protein [Escherichia coli MS 21-1] gi|300525409|gb|EFK46478.1| OmpA family protein [Escherichia coli MS 119-7] gi|300532114|gb|EFK53176.1| OmpA family protein [Escherichia coli MS 107-1] gi|300840082|gb|EFK67842.1| OmpA family protein [Escherichia coli MS 124-1] gi|301075768|gb|EFK90574.1| OmpA family protein [Escherichia coli MS 146-1] gi|306906028|gb|EFN36548.1| OmpA/MotB domain protein [Escherichia coli W] gi|307555658|gb|ADN48433.1| putative outer membrane protein [Escherichia coli ABU 83972] gi|308120254|gb|EFO57516.1| OmpA family protein [Escherichia coli MS 145-7] gi|310334550|gb|EFQ00755.1| inner membrane lipoprotein yiaD [Escherichia coli 1827-70] gi|312287364|gb|EFR15273.1| inner membrane lipoprotein yiaD [Escherichia coli 2362-75] gi|315062837|gb|ADT77164.1| predicted outer membrane lipoprotein [Escherichia coli W] gi|315138128|dbj|BAJ45287.1| inner membrane lipoprotein yiaD precursor [Escherichia coli DH1] gi|315254081|gb|EFU34049.1| OmpA family protein [Escherichia coli MS 85-1] gi|315294130|gb|EFU53482.1| OmpA family protein [Escherichia coli MS 153-1] gi|315300095|gb|EFU59333.1| OmpA family protein [Escherichia coli MS 16-3] gi|315618412|gb|EFU98999.1| inner membrane lipoprotein yiaD [Escherichia coli 3431] gi|320191391|gb|EFW66041.1| putative outer membrane protein [Escherichia coli O157:H7 str. EC1212] gi|320201426|gb|EFW76007.1| putative outer membrane protein [Escherichia coli EC4100B] gi|320639873|gb|EFX09467.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. G5101] gi|320645036|gb|EFX14060.1| putative outer membrane lipoprotein [Escherichia coli O157:H- str. 493-89] gi|320650303|gb|EFX18786.1| putative outer membrane lipoprotein [Escherichia coli O157:H- str. H 2687] gi|320655878|gb|EFX23801.1| putative outer membrane lipoprotein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661658|gb|EFX29073.1| putative outer membrane lipoprotein [Escherichia coli O55:H7 str. USDA 5905] gi|320666682|gb|EFX33665.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. LSU-61] gi|323153881|gb|EFZ40115.1| inner membrane lipoprotein yiaD [Escherichia coli EPECa14] gi|323160679|gb|EFZ46618.1| inner membrane lipoprotein yiaD [Escherichia coli E128010] gi|323174210|gb|EFZ59838.1| inner membrane lipoprotein yiaD [Escherichia coli LT-68] gi|323179484|gb|EFZ65051.1| inner membrane lipoprotein yiaD [Escherichia coli 1180] gi|323182708|gb|EFZ68110.1| inner membrane lipoprotein yiaD [Escherichia coli 1357] gi|323376572|gb|ADX48840.1| OmpA/MotB domain protein [Escherichia coli KO11] gi|323934746|gb|EGB31133.1| OmpA family protein [Escherichia coli E1520] gi|323939549|gb|EGB35757.1| OmpA family protein [Escherichia coli E482] gi|323944551|gb|EGB40622.1| OmpA family protein [Escherichia coli H120] gi|323959435|gb|EGB55094.1| OmpA family protein [Escherichia coli H489] gi|323966022|gb|EGB61463.1| OmpA family protein [Escherichia coli M863] gi|323971357|gb|EGB66598.1| OmpA family protein [Escherichia coli TA007] gi|323975035|gb|EGB70144.1| OmpA family protein [Escherichia coli TW10509] gi|324007339|gb|EGB76558.1| OmpA family protein [Escherichia coli MS 57-2] gi|324014213|gb|EGB83432.1| OmpA family protein [Escherichia coli MS 60-1] gi|324021134|gb|EGB90353.1| OmpA family protein [Escherichia coli MS 117-3] gi|324116568|gb|EGC10485.1| OmpA family protein [Escherichia coli E1167] gi|326337443|gb|EGD61278.1| putative outer membrane protein [Escherichia coli O157:H7 str. 1044] gi|326339968|gb|EGD63775.1| putative outer membrane protein [Escherichia coli O157:H7 str. 1125] gi|327251203|gb|EGE62896.1| inner membrane lipoprotein yiaD [Escherichia coli STEC_7v] gi|331036557|gb|EGI08783.1| inner membrane lipoprotein YiaD [Escherichia coli H736] gi|331047204|gb|EGI19282.1| inner membrane lipoprotein YiaD [Escherichia coli M718] gi|331053083|gb|EGI25116.1| inner membrane lipoprotein YiaD [Escherichia coli TA206] gi|331057685|gb|EGI29671.1| inner membrane lipoprotein YiaD [Escherichia coli TA143] gi|331062448|gb|EGI34368.1| inner membrane lipoprotein YiaD [Escherichia coli TA271] gi|331067952|gb|EGI39350.1| inner membrane lipoprotein YiaD [Escherichia coli TA280] gi|331072805|gb|EGI44130.1| inner membrane lipoprotein YiaD [Escherichia coli H591] gi|331077586|gb|EGI48798.1| inner membrane lipoprotein YiaD [Escherichia coli H299] gi|332104471|gb|EGJ07817.1| OmpA family protein [Shigella sp. D9] gi|332345519|gb|AEE58853.1| inner membrane lipoprotein YiaD [Escherichia coli UMNK88] Length = 219 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|110637965|ref|YP_678172.1| OmpA family outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110280646|gb|ABG58832.1| outer membrane protein, OmpA family [Cytophaga hutchinsonii ATCC 33406] Length = 641 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 I + + G I + N FD + S E+ L K+ ++L+ + + I Sbjct: 514 KEIDDVICLDKIDIGTTIVL----NNVFFDVNKSTLRKESETELDKLFDILSKNPKIKIE 569 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-P 326 + GHTD+ + N LS RA++ L+ G+S DRI + G + + +D P Sbjct: 570 VAGHTDSD---GDTQANLTLSDARAHTVKDYLIGKGISADRIIYV-GHGEGKPVVPNDTP 625 Query: 327 MN-SANRRIDILVED 340 N NRR +I + + Sbjct: 626 ENKQLNRRTEIKILE 640 >gi|157156833|ref|YP_001464142.1| OmpA domain-containing protein [Escherichia coli E24377A] gi|157078863|gb|ABV18571.1| OmpA domain protein [Escherichia coli E24377A] Length = 550 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + +FD + T V++ + Sbjct: 399 EQIRQPVLRAIRDYRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|330752331|emb|CBL87285.1| protein with similarity to outer membrane OmpA family protein [uncultured Flavobacteria bacterium] Length = 266 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 11/148 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A+ I L+ + K E + G I + +F + + L ++ Sbjct: 126 AQSIKLELNKAIPKQKKKWFERELVK-GDKIRL----KNILFVGGEARFRAVSYKDLNQL 180 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 V+ I + GH SP + N LS RA + + L+K G+ E R+S I G Sbjct: 181 LAVMNAYPNLKILVEGHV-NSPGKRNTNTNQVLSTQRAEAVVKYLIKKGIRESRLSFI-G 238 Query: 315 FAHHRLKIASDPMNSA---NRRIDILVE 339 F + ++ + + NRR++ILV+ Sbjct: 239 FGNTKMIYPNTKLEYEMQFNRRVEILVQ 266 >gi|262068012|ref|ZP_06027624.1| OmpA family protein [Fusobacterium periodonticum ATCC 33693] gi|291378280|gb|EFE85798.1| OmpA family protein [Fusobacterium periodonticum ATCC 33693] Length = 212 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + A+++ + L G A+ +++++ F S+ L Sbjct: 74 DNQARELKAALKGTQAE-------VRNDGNALVVNL---PGGVTFASDSANISSGFYSAL 123 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + L E I + G+TD++ N LS RA + Q + GVS +RI Sbjct: 124 NGVAQTLVKYPETRIQVNGYTDST---GGDAHNLDLSQRRANAVAQYFIAQGVSSNRIVA 180 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +GF ++ ANRR+++ + Q Sbjct: 181 -NGFGSSNPIASNATPEGRQANRRVEVRILPAQ 212 >gi|156936614|ref|YP_001440528.1| hypothetical protein ESA_pESA3p05495 [Cronobacter sakazakii ATCC BAA-894] gi|156534868|gb|ABU79692.1| hypothetical protein ESA_pESA3p05495 [Cronobacter sakazakii ATCC BAA-894] Length = 567 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 13/158 (8%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-L 245 + +K + L IS + + + + K ++ E I + +FD Sbjct: 398 QGEKLIPPLDAAISDWSAPVSSPPVNKNIITE--PQTIRL-----DALSLFDTGQWRLKT 450 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 T V++ + + A +I + GHTD R N +LSL RA + + +G Sbjct: 451 GSTKVLVNALVGIKARPGWLIVVAGHTDDV---GDERANQQLSLKRAEAVRDWMRGTGDV 507 Query: 306 EDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + G+ R + + + NRR++I + + Sbjct: 508 PESCFAVQGYGESRPAVPNTTAEGRALNRRVEISLVPQ 545 >gi|297537693|ref|YP_003673462.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297257040|gb|ADI28885.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 224 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 16/151 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR ++ +++ +G T+T +D + F + P Sbjct: 73 KRQEEQKRQMEEATAGT---------GVAVTQTADNRLKLDIPSDISFAVGRADVQPNFR 123 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L L + ++I GHTD++ + LSL+RA S L V+ +R Sbjct: 124 AILDTFANGLVTNPNSNVTIIGHTDSTGSDAVNNP---LSLNRAASVRDYLTSKRVASNR 180 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDIL 337 I+ I G +A+D + NRR++I Sbjct: 181 IT-IDGRGSREPLVANDTAANKAKNRRVEIF 210 >gi|89899024|ref|YP_521495.1| OmpA/MotB [Rhodoferax ferrireducens T118] gi|89343761|gb|ABD67964.1| OmpA/MotB [Rhodoferax ferrireducens T118] Length = 217 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P +L + + L+ I I GHTD++ +I LS++RA SA Sbjct: 110 FDINRFDIKPNMRPILDQFAQGLSSQPNTEIRIIGHTDSTGSDSINDP---LSVNRAASA 166 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 L+ GV RI +I+G H ++ + NRRI+I + +R Sbjct: 167 RDYLVARGVDGRRI-QINGRGSHEPIADNNTERGRAQNRRIEIFLAER 213 >gi|315635918|ref|ZP_07891180.1| outer membrane fibronectin-binding protein [Arcobacter butzleri JV22] gi|315479897|gb|EFU70568.1| outer membrane fibronectin-binding protein [Arcobacter butzleri JV22] Length = 338 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + + + +V+ + +I HTD+ N +LS RA SA Sbjct: 236 FDTAKADIKDSYNSRINEFAKVMKADPKLKANIEAHTDSV---GTDAYNQKLSERRATSA 292 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L+ +GV +DRI + G+ R ++D + NRR++ Sbjct: 293 VNALVAAGVEKDRIKAV-GYGESRPIASNDTVEGRAENRRVE 333 >gi|323525137|ref|YP_004227290.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323382139|gb|ADX54230.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 217 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272 G I +Q + + FD +S P VL ++ + L + EVI+ + GHT Sbjct: 85 GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHT 144 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D++ N LS++RA S L + GV+ R+S G ++ +++ +A Sbjct: 145 DST---GQPAYNQTLSVNRAQSVVGFLEQRGVAPQRLSA-QGMGQNQPIADNSTEAGRAA 200 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 201 NRRVEIYL 208 >gi|152969879|ref|YP_001334988.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954728|gb|ABR76758.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 568 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETI 249 R + + + + G V + I + + +FD + P T Sbjct: 398 RGEQIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRL-----DSMSLFDTGKWVLKPGSTK 452 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++ + ++ A +I + GHTD+ + N LSL RA S + +G D Sbjct: 453 RLVNSLMDIKARPGWLIVVAGHTDSV---GEEKANQLLSLKRAESVRDWMRDTGDVPDSC 509 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + G+ R +D + NRR++I + + Sbjct: 510 FAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543 >gi|84500108|ref|ZP_00998374.1| flagellar motor protein [Oceanicola batsensis HTCC2597] gi|84392042|gb|EAQ04310.1| flagellar motor protein [Oceanicola batsensis HTCC2597] Length = 852 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 93/291 (31%), Gaps = 27/291 (9%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 +D ++ + + A + + + + Q +L ++ + ++ Sbjct: 571 EDLRRQLAAALAAKLEAERAAEESMSEAEQRAALLRQATQELESEQASSADAARRTTVLN 630 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 Q Q + +++ L + + N + S + Sbjct: 631 QQVAQLRAQLSSLQALLDDYKDRDAANQVQIQSLGSDLNAALAQKAAEERRRRQLEEAER 690 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + A + +K + ++ +G IV ++ +FD Sbjct: 691 RRLEAEAERLQKYRSEFFGQLRDVFAGQEGVKIVGDRFVFSSE-------------VLFD 737 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVI--------SIRGHTDASPFRNIA--RDNWRLS 288 + + I L + I + GHTD P +DNW LS Sbjct: 738 PGQADLSEGGQRQIAGIAATLRSLADEIPEGIDWVLRVDGHTDDVPLSGQGEFQDNWELS 797 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 RA S + + G DR++ +GF H+ + D +ANRRI++ Sbjct: 798 QARALSVVRYMEDFLGFPPDRLAA-NGFGEHQPIASGDSEAARAANRRIEL 847 >gi|193065118|ref|ZP_03046192.1| OmpA domain protein [Escherichia coli E22] gi|194426303|ref|ZP_03058858.1| OmpA domain protein [Escherichia coli B171] gi|260845464|ref|YP_003223242.1| putative outer membrane lipoprotein [Escherichia coli O103:H2 str. 12009] gi|192927249|gb|EDV81869.1| OmpA domain protein [Escherichia coli E22] gi|194415611|gb|EDX31878.1| OmpA domain protein [Escherichia coli B171] gi|257760611|dbj|BAI32108.1| predicted outer membrane lipoprotein [Escherichia coli O103:H2 str. 12009] Length = 550 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + +FD + T V++ + Sbjct: 399 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|254038735|ref|ZP_04872791.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|226839241|gb|EEH71264.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|309703955|emb|CBJ03298.1| putative outer membrane protein [Escherichia coli ETEC H10407] Length = 219 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|45656435|ref|YP_000521.1| peptidoglycan associated periplasmic protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599670|gb|AAS69158.1| peptidoglycan associated periplasmic protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 660 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I I N F+ S PE+ L ++ E++ + + I I GHTD +DN Sbjct: 547 IQI----NNLFFESKSFQIAPESAPELDRLAEIVKENPDIEIQIEGHTDNI---GKKKDN 599 Query: 285 WRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 LS RA + + L K +S+ RI + GF +D + NRR++ + + Sbjct: 600 LILSEKRAAAVAEYLFQKHSISKTRI-QTKGFGDSVPLSKNDSEEARKKNRRVNFTILKK 658 >gi|24216384|ref|NP_713865.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] gi|24197668|gb|AAN50883.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] Length = 660 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I I N F+ S PE+ L ++ E++ + + I I GHTD +DN Sbjct: 547 IQI----NNLFFESKSFQIAPESAPELDRLAEIVKENPDIEIQIEGHTDNI---GKKKDN 599 Query: 285 WRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 LS RA + + L K +S+ RI + GF +D + NRR++ + + Sbjct: 600 LILSEKRAAAVAEYLFQKHSISKTRI-QTKGFGDSVPLSKNDSEEARKKNRRVNFTILKK 658 >gi|308273523|emb|CBX30125.1| hypothetical protein N47_D29340 [uncultured Desulfobacterium sp.] Length = 212 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 8/146 (5%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 KI G + +N + +T G ++ +F + + PE+ +L+K+ Sbjct: 42 KGKILEKALGGINENANDDIGIKT---GAGREVLTMGEKALFYTNRHLLKPESFALLKKV 98 Query: 256 GEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 G + + I GHTD NW +S A + ++ + DRI+ Sbjct: 99 GNFINQGNYKVLIVGHTDNRDAQEKGYNSNWEISSLMAVQLQKYFIEECKIKPDRITA-Y 157 Query: 314 GFAHHRLKIASDP--MNSANRRIDIL 337 G+ + ++D NRRI+I+ Sbjct: 158 GYGSQQPAASNDTPESRQKNRRIEII 183 >gi|237740687|ref|ZP_04571168.1| outer membrane protein [Fusobacterium sp. 2_1_31] gi|229422704|gb|EEO37751.1| outer membrane protein [Fusobacterium sp. 2_1_31] Length = 212 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + A+++ + L G A+ +++++ F S+ L Sbjct: 74 DNQARELRAALKGTQAE-------VRNDGNALVVNL---PGGVTFASDSANISSGFYSAL 123 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + L E I + G+TD++ N LS RA S Q L+ GVS RI Sbjct: 124 NGVAQTLVRYPETRIQVNGYTDST---GGDAHNQELSQRRANSVAQYLISQGVSSSRIVA 180 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +GF ++ ANRR+++ + Q Sbjct: 181 -NGFGSSNPIASNATPEGRQANRRVEVRILPAQ 212 >gi|330993344|ref|ZP_08317279.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] gi|329759374|gb|EGG75883.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] Length = 368 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + + ++ + + H T I + G+TD A P + N LS+ R Sbjct: 260 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTAAHPGPRGQQYNLGLSMRR 319 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV + I I G+ + + D NRR++I++ Sbjct: 320 ADSVKAELIRDGVPANAID-IHGYGEAHPLVPTGPDTREPQNRRVEIIL 367 >gi|300950898|ref|ZP_07164778.1| OmpA family protein [Escherichia coli MS 116-1] gi|300449827|gb|EFK13447.1| OmpA family protein [Escherichia coli MS 116-1] Length = 217 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|296115020|ref|ZP_06833663.1| outer membrane protein OmpA [Gluconacetobacter hansenii ATCC 23769] gi|295978438|gb|EFG85173.1| outer membrane protein OmpA [Gluconacetobacter hansenii ATCC 23769] Length = 392 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + ++ + + H T I + G+TD A P + N LSL R Sbjct: 284 FFDWDGAALTGRAREIVAEAAQASTHVQTTRIEVNGYTDNSAAQPGPRGQQYNMGLSLRR 343 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV + I I G+ + + D NRR++I++ Sbjct: 344 ANSVKAELIRDGVPANAID-IQGYGEAHPLVPTGPDTREPQNRRVEIIL 391 >gi|293194235|ref|ZP_06609957.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus F0309] gi|292819754|gb|EFF78767.1| outer membrane lipoprotein, OmpA family [Actinomyces odontolyticus F0309] Length = 235 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281 G +I++ D +FD S + L K+ VL + + I GHTD+ + Sbjct: 116 GTVITLED---GVLFDFGKSDIRSDAAHTLSKLATVLNDAKVPAAHIYGHTDSI---SDE 169 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRR 333 N +LS +RA + L K GVS I +G+ + ++ + NRR Sbjct: 170 AFNLQLSQERADAVSAELKKDGVSA--ILDATGYGESKPVAPNENADGSDNPAGRALNRR 227 Query: 334 IDILV 338 ++I + Sbjct: 228 VEIFI 232 >gi|307728928|ref|YP_003906152.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307583463|gb|ADN56861.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 217 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272 G I +Q + + FD +S P VL ++ + L + EVI+ + GHT Sbjct: 85 GTGTQITEQPDGSLKLNIPSSVTFDTNSYAIKPSFAPVLDQLTQTLQQNPEVIAQVVGHT 144 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D++ N LS++RA S L + GV+ R+S G ++ ++ +A Sbjct: 145 DST---GQPAYNQTLSVNRAQSVVSFLEQRGVAAQRLSA-QGMGQNQPIADNNTEAGRAA 200 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 201 NRRVEIYL 208 >gi|254786261|ref|YP_003073690.1| hypothetical protein TERTU_2240 [Teredinibacter turnerae T7901] gi|237686902|gb|ACR14166.1| conserved repeat domain protein [Teredinibacter turnerae T7901] Length = 3228 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 10/148 (6%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + +I + A+ + V+ + F +S+ LQ Sbjct: 3079 KVVAEIPEAKPAIPAEPAKEYVVISKDDCAL---FSGTLEGVTFATASAQLTEAAQHTLQ 3135 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + L ISIR HTDA A DN LS RA + Q + +GV +R+S Sbjct: 3136 NAVDALQRYPRLAISIRAHTDAV---GKAEDNLALSEARALAVQQFFVAAGVDNERLSA- 3191 Query: 313 SGFAHHRLK--IASDPMNSANRRIDILV 338 G+ ++ + NRR+++ + Sbjct: 3192 RGYGEAEPVADNSTAAGRAQNRRVELKL 3219 >gi|237815623|ref|ZP_04594620.1| OmpA family protein [Brucella abortus str. 2308 A] gi|237788921|gb|EEP63132.1| OmpA family protein [Brucella abortus str. 2308 A] Length = 243 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 113 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 171 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + +++ Sbjct: 172 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 227 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 228 AQNRRVEIQISPLRG 242 >gi|82545917|ref|YP_409864.1| outer membrane lipoprotein [Shigella boydii Sb227] gi|187734257|ref|YP_001882255.1| putative outer membrane lipoprotein [Shigella boydii CDC 3083-94] gi|81247328|gb|ABB68036.1| putative outer membrane protein [Shigella boydii Sb227] gi|187431249|gb|ACD10523.1| OmpA family protein [Shigella boydii CDC 3083-94] gi|320187083|gb|EFW61791.1| Outer membrane protein A precursor [Shigella flexneri CDC 796-83] gi|332089323|gb|EGI94427.1| inner membrane lipoprotein yiaD [Shigella boydii 3594-74] Length = 219 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|254693909|ref|ZP_05155737.1| Bacterial outer membrane protein [Brucella abortus bv. 3 str. Tulya] gi|261214200|ref|ZP_05928481.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260915807|gb|EEX82668.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 216 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 86 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 144 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + +++ Sbjct: 145 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 200 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 201 AQNRRVEIQISPLRG 215 >gi|238894412|ref|YP_002919146.1| putative outer membrane protein [Klebsiella pneumoniae NTUH-K2044] gi|238546728|dbj|BAH63079.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 568 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +I + +FD + P T ++ + ++ A +I + GHTD+ + N Sbjct: 429 DVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 485 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA S + +G D + G+ R +D + NRR++I + + Sbjct: 486 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543 >gi|293412987|ref|ZP_06655655.1| conserved hypothetical protein [Escherichia coli B354] gi|291468634|gb|EFF11127.1| conserved hypothetical protein [Escherichia coli B354] Length = 219 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDAGRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|289675211|ref|ZP_06496101.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5] gi|330896025|gb|EGH28248.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936859|gb|EGH41006.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] gi|330975430|gb|EGH75496.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 260 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N + ++ + + D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPQATQVAALETKDASEWLTKAEQAFRNDDDVQKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRIELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV RI + G + +S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARIVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248 >gi|330950708|gb|EGH50968.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 260 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 88/237 (37%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N + ++ + + +D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPQATQVAALETKDASEWLTKAEQAFRNDEDVQKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRIELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + +S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248 >gi|309796906|ref|ZP_07691307.1| OmpA family protein [Escherichia coli MS 145-7] gi|308119434|gb|EFO56696.1| OmpA family protein [Escherichia coli MS 145-7] Length = 550 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + +FD + T V++ + Sbjct: 399 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|290509857|ref|ZP_06549228.1| outer membrane protein [Klebsiella sp. 1_1_55] gi|289779251|gb|EFD87248.1| outer membrane protein [Klebsiella sp. 1_1_55] Length = 568 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +I + +FD + P T ++ + ++ A +I + GHTD+ + N Sbjct: 429 DVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 485 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA S + +G D + G+ R +D + NRR++I + + Sbjct: 486 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543 >gi|466690|gb|AAB18529.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655] Length = 219 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + ++G TR+G I I++ N FD SS+ P L + VL + +++ Sbjct: 90 DKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNV 148 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 G+TD++ ++ N RLS RA S L+ GV RI + G ++ Sbjct: 149 IGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPIASNSTAE 204 Query: 329 --SANRRIDILV 338 + NRR++I + Sbjct: 205 GKAQNRRVEITL 216 >gi|157149164|ref|YP_001456483.1| putative outer membrane lipoprotein [Citrobacter koseri ATCC BAA-895] gi|157086369|gb|ABV16047.1| hypothetical protein CKO_05004 [Citrobacter koseri ATCC BAA-895] Length = 220 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N RLS RA S L+ GV+ +RI + SG Sbjct: 142 NKTAVNVVGYTDST---GGQDLNMRLSQQRADSVASALITQGVAANRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220 >gi|312885261|ref|ZP_07744938.1| outer membrane protein A precursor [Vibrio caribbenthicus ATCC BAA-2122] gi|309367068|gb|EFP94643.1| outer membrane protein A precursor [Vibrio caribbenthicus ATCC BAA-2122] Length = 323 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 228 IIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284 I D + F+ S+ PE+ L I EVL V+ + G+TD + N Sbjct: 203 IFDAKVMGAGNFEFDSAKLKPESANELDSIVEVLEDYPQSVVEVSGYTDT---SGPEKYN 259 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 +LS RA + VL+ G+ E RI+ I G +++ + NRR++I Sbjct: 260 QKLSEQRAQAVKAVLIAKGIDESRITAI-GKGEANPIASNETLEGRKQNRRVEI 312 >gi|78223923|ref|YP_385670.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78195178|gb|ABB32945.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 398 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ S++ P + L I +L I I G+TD + N +LS DR Sbjct: 291 DRLQFETGSAVLKPSSQEQLGNIAAILKAFPQVAIKIGGYTDNV---GDPQANLKLSRDR 347 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 A + Q L+K G+ R+ G+ A++ NRRID+ V + Sbjct: 348 ASNTMQELVKLGIDPSRLES-EGYGEEHPVADNATEEGRQQNRRIDVRVTKK 398 >gi|163740474|ref|ZP_02147868.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10] gi|161386332|gb|EDQ10707.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10] Length = 216 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 22/215 (10%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S+ +L + D ++ + + + I Sbjct: 19 TDPATIGTPGSKTQNGALIGGLIGAGVGAAANDSDRGLGAVTGALVGAAAGSVI-----G 73 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L +++ ++S G+ T +++S+ N F S+ P Sbjct: 74 NQLDAQERELRQSISN-------DGISIVNTGDRLIVSL---PNDLTFATDSAAVSPAVR 123 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ L + + GHTD+ A N LS RA + + GV +R Sbjct: 124 SDLNKVASSLVRYPNSQVQVIGHTDSD---GDAGYNQGLSERRANAVADQIQAGGVPYNR 180 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 + +I G + ++ + NRR++I+V + Sbjct: 181 V-QIIGRGESQPVASNLTAEGKARNRRVEIVVIPQ 214 >gi|237703321|ref|ZP_04533802.1| OmpA family protein [Escherichia sp. 3_2_53FAA] gi|226902585|gb|EEH88844.1| OmpA family protein [Escherichia sp. 3_2_53FAA] gi|315285303|gb|EFU44748.1| OmpA family protein [Escherichia coli MS 110-3] gi|323954903|gb|EGB50683.1| OmpA family protein [Escherichia coli H263] Length = 219 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGSHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|288958638|ref|YP_003448979.1| ompA-family protein [Azospirillum sp. B510] gi|288910946|dbj|BAI72435.1| ompA-family protein [Azospirillum sp. B510] Length = 502 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 8/112 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSA 295 F S P + + + + E L IS+ G+TD+ R+ N LS RA+ Sbjct: 391 FASGSDRIEPRYVELFRHVAEALRPEQGRISVIGNTDSVAIRSTRYRSNQELSEARAFRV 450 Query: 296 YQVLM-----KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 +++ +G G + ANRR+DI++ Sbjct: 451 QRLMTDILGKDAGRDGGSRLSAEGRGDGDPIAPNTTAEGRQANRRVDIVLVP 502 >gi|66044564|ref|YP_234405.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63255271|gb|AAY36367.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 260 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N + ++ + + +D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPQATQVAALETKDASEWLTKAEQAFRNDEDVQKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAAFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248 >gi|330014716|ref|ZP_08307964.1| OmpA family protein [Klebsiella sp. MS 92-3] gi|328532776|gb|EGF59559.1| OmpA family protein [Klebsiella sp. MS 92-3] Length = 568 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 11/154 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETI 249 R + + + + G V + I + + +FD + P T Sbjct: 398 RGEQIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRL-----DSMSLFDTGKWVLKPGSTK 452 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++ + ++ A +I + GHTD+ + N LSL RA S + +G D Sbjct: 453 RLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQLLSLKRAESVRDWMRDTGDVPDSC 509 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + G+ R +D + NRR++I + + Sbjct: 510 FAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543 >gi|317046265|ref|YP_004113913.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b] gi|316947882|gb|ADU67357.1| OmpA/MotB domain protein [Pantoea sp. At-9b] Length = 220 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD SSS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSSSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R + N RLS RA S L+ GV +R+ + G Sbjct: 142 PKTAVNVTGYTDSTGTRAL---NMRLSQQRAESVASALIVQGVEANRL-RTQGLGPDNPV 197 Query: 322 IASDPMN--SANRRIDILVED 340 ++ + NRR++I + Sbjct: 198 ASNSTEAGKAQNRRVEITLTP 218 >gi|332704092|ref|ZP_08424180.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554241|gb|EGJ51285.1| OmpA/MotB domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 253 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 11/237 (4%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 + Q++ + S + S D+ K + S+ Sbjct: 6 DETPPVPPRRTQEEAPEEGAPGWMTTFADMMSLLLCFFILLLSFSSMDVAKYEKVLGSLK 65 Query: 169 KEENYFLPPLSKEKILAMKRKKRL-QDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 P E + L ++L+ L ++ + + ++ S Sbjct: 66 YAFGVQRTPSDSEFASPPGVSQELSENLSADQKDILGLVLVLRKLVHQDVDVKDLAVVSS 125 Query: 228 -----IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA- 281 ++ + MFD S+ PE + ++ K +L + IRGHTD+ + Sbjct: 126 DRNGALLRVQAGAMFDPGSAALKPEAVKIIDKAVTILKERNFSVVIRGHTDSHIVHSAQF 185 Query: 282 RDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 NW LS RA ++ +++++ G + +RI I G+A R + + + + NRR++ Sbjct: 186 PSNWELSAARAAASARLVIERGAIDTNRIKAI-GYADSRPLVPNSTEENRAFNRRVE 241 >gi|50956547|gb|AAT90794.1| conserved hypothetical protein [uncultured proteobacterium QS1] Length = 511 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 13/155 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV--LQKI 255 I TL + + +G + G + I F + E ++++ Sbjct: 344 IMETLPQPLPKILSEGWLEVRADPRG-WLLIFTSDGA--FATGQARLSEEFKKKRNIERL 400 Query: 256 GEVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS- 313 GE LA + + GHTD P+RN + N +LS RA + + +S S ++ Sbjct: 401 GEALAPWPGDLEVIGHTDNKPYRNSPSNSNLKLSEGRAQTVADKMRESMQSSKYQRSVTS 460 Query: 314 -GFAHHRLKIASDPM--NSANRRIDIL--VEDRQG 343 G +D S NRR+DIL + +R+ Sbjct: 461 VGKGDTEPLDTNDTEQGRSRNRRVDILWKIGEREA 495 >gi|330807883|ref|YP_004352345.1| hypothetical protein PSEBR_a1163 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375991|gb|AEA67341.1| Conserved hypothetical protein; putative outer membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 231 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + P VL + L T + + GHTD+ N RLS RA S Sbjct: 127 FEFNKATLTPADKDVLSGVATRLKQETSTTQLRVTGHTDSV---GSDAYNQRLSEKRANS 183 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 Q L+ +GV +SG + + + NRR +I + Sbjct: 184 VVQYLVDNGVPRASFVSVSGAGESQPVADNKTADGRAMNRRTEIKI 229 >gi|253568033|ref|ZP_04845444.1| outer membrane protein [Bacteroides sp. 1_1_6] gi|298387668|ref|ZP_06997219.1| lipoprotein PG3 [Bacteroides sp. 1_1_14] gi|251842106|gb|EES70186.1| outer membrane protein [Bacteroides sp. 1_1_6] gi|298259524|gb|EFI02397.1| lipoprotein PG3 [Bacteroides sp. 1_1_14] Length = 260 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 88 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 136 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDR 291 ++ L K VL + + +SI G+TD +RN + N LS +R Sbjct: 137 TGNATLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSRQKNLNLSQER 196 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 197 AQSVASYLLNCGVSSNQIKGVQGMGESDPIASNDTAAGREQNRRVEV 243 >gi|225024496|ref|ZP_03713688.1| hypothetical protein EIKCOROL_01371 [Eikenella corrodens ATCC 23834] gi|224942771|gb|EEG23980.1| hypothetical protein EIKCOROL_01371 [Eikenella corrodens ATCC 23834] Length = 217 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 16/115 (13%) Query: 237 FDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD+SS P L ++ L + I++ GHTD + N LS RA Sbjct: 102 FDRSSEQDLQPRGREELTELAAQLRNFEQLNSITVIGHTD---YLGSDAYNQNLSQQRAE 158 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILVE 339 + + L G+ D+I + G + D NRR++I V+ Sbjct: 159 TVRRYLAAQGLPADKIRAV-GMGESQPVKQCDNHGGRSQLIACLQPNRRVEIQVD 212 >gi|206579667|ref|YP_002238891.1| OmpA domain protein [Klebsiella pneumoniae 342] gi|206568725|gb|ACI10501.1| OmpA domain protein [Klebsiella pneumoniae 342] Length = 567 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +I + +FD + P T ++ + ++ A +I + GHTD+ + N Sbjct: 428 DVIRLDSMSLFDTGKWVLKPGSTKRLVNSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 484 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA S + +G D + G+ R +D + NRR++I + + Sbjct: 485 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 542 >gi|313200172|ref|YP_004038830.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312439488|gb|ADQ83594.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 170 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 +K F T G +S D +FD + ++ + +QK+ + L + I G Sbjct: 45 LKEQGFVHTDDGWALSFAD---KLLFDTNQAVLNDRSRGAVQKVSKALQSVGLNKMRIEG 101 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 H DA+ N LS RA++ ++SG+ + I + G ++ Sbjct: 102 HADAT---GRESYNVELSEQRAWAVADAFIQSGMPKSGII-VRGMGSQSPVASNATVAGR 157 Query: 329 SANRRIDILVED 340 + NRR+ I+V Sbjct: 158 AENRRVSIIVVT 169 >gi|323435973|ref|ZP_01049351.2| OmpA family protein [Dokdonia donghaensis MED134] gi|321496288|gb|EAQ39323.2| OmpA family protein [Dokdonia donghaensis MED134] Length = 547 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 20/144 (13%) Query: 211 IVKGVLFETTR-------TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 VK ++ E T +I I + +FD S+ + + L + L + Sbjct: 412 FVKNLILEATPAPIVKTTEKTIIKI----DNILFDLDSAKIKEISTITLNTVVATLKANP 467 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 E I+I HTDA A N RLS+ RA SA + L+ G+S+DR+S GF +L I Sbjct: 468 ELKIAINAHTDAQ---GSASYNKRLSMRRAASAMEYLLSKGISKDRLSS-QGFGEEQLLI 523 Query: 323 A----SDPMNSANRRIDILVEDRQ 342 + N NRRI+ +V ++ Sbjct: 524 NCTSCTPQENELNRRIEFVVISKE 547 >gi|325923680|ref|ZP_08185304.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas gardneri ATCC 19865] gi|325545846|gb|EGD17076.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas gardneri ATCC 19865] Length = 407 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 298 FDFNKSTLRPDAQSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 354 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 355 YDYLTKNGVDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 407 >gi|254303029|ref|ZP_04970387.1| OmpA family membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323221|gb|EDK88471.1| OmpA family membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 386 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 12/235 (5%) Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 + S Q ++ N + + + ++ + + D + Sbjct: 158 AQGSGQYLDDKNKVSFQIAADGTGVYKDENDDVTITIAENSSTYTKGNITVKNNDDGSGT 217 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 N ++ L + + K++ ++ K +V V +LI Sbjct: 218 YNDKDKDLLIENDGKGKAIITLKEKSTEVEAKPLEKPEKFPKLKMVPPV-PSIEANSLLI 276 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNW 285 ++ + +FD PE L + VL + I GHTD+ N Sbjct: 277 TL---DSGILFDVDKYDVRPEAERALASLATVLKEADVKAFEIDGHTDSDA---SDEYNQ 330 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS RA + L G++ + I G+ R ++D NRR++I++ Sbjct: 331 ALSEKRANAVKDFLASQGLTSE--ITIIGYGESRPVASNDTPEGKQKNRRVEIII 383 >gi|148559799|ref|YP_001259124.1| OmpA family protein [Brucella ovis ATCC 25840] gi|148371056|gb|ABQ61035.1| OmpA family protein [Brucella ovis ATCC 25840] Length = 243 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 113 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 171 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + ++ Sbjct: 172 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 227 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 228 AQNRRVEIQISPLRG 242 >gi|150398661|ref|YP_001329128.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419] gi|150030176|gb|ABR62293.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 221 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + F +P L + VL ++ I + G Sbjct: 91 LQGTGVSVTRAGDRI-ILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFSKTLIDVDG 149 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 HTD++ A N LS RA S L GV + R+S + G+ R ++ Sbjct: 150 HTDST---GSASYNQGLSERRAASVANYLASRGVDQRRMSAV-GYGMERPVASNASEIGR 205 Query: 329 SANRRIDILVED-RQG 343 NRR++I + +QG Sbjct: 206 VQNRRVEISIAPIKQG 221 >gi|237800117|ref|ZP_04588578.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022973|gb|EGI03030.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 260 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N E ++ + + + +D K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPEATKVAALETKDASEWLDKADKAFRDSEDAQKVDQLAY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRVELAKQTIALRTSEAALQNASADRAKARLDARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKADLKPTAQGDIGKLASFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248 >gi|291615624|ref|YP_003518366.1| YiaD [Pantoea ananatis LMG 20103] gi|291150654|gb|ADD75238.1| YiaD [Pantoea ananatis LMG 20103] Length = 237 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR G I + N FD SSS P L + VL Sbjct: 100 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSSSLKPAGANTLTGVAMVLKEY 158 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRL 320 + +++ GHTD++ R + N RLS RA S L+ GV+ +R+ + +G Sbjct: 159 PKTAVNVVGHTDSTGSRAL---NMRLSQQRAESVASALIVQGVAGNRLHTQGAGPDSPVA 215 Query: 321 KIASDPMNSANRRIDILV 338 +++ + NRR++I + Sbjct: 216 TNSTEAGKAQNRRVEITL 233 >gi|224367491|ref|YP_002601654.1| OmpA1 [Desulfobacterium autotrophicum HRM2] gi|223690207|gb|ACN13490.1| OmpA1 [Desulfobacterium autotrophicum HRM2] Length = 374 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 123/336 (36%), Gaps = 46/336 (13%) Query: 39 DFMTVLMAFFLVMWIINATDDD--------TKKAIEQYFNPFGKNLMTASKGIFDEQNPP 90 D+++ L F +++ ++ DD T + I ++ + L + G+ + P Sbjct: 42 DYVSALDNFLIILDASSSMDDRYNGNKKFVTAREIVKHLSQTLPEL-GQNAGLRSFGHSP 100 Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + S + + E T+ ++ K G ++ + + ++ K ++ Sbjct: 101 KVSDKLTVLFYGMEEYTQKGLNEKSGLVSRAGGTSPMHTALTAAREDLKTFSGKTAVVII 160 Query: 151 SEKGKDLC-------KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-----K 198 S+ + + ++ K+ E+ F P + M + + ++ K K Sbjct: 161 SDGQEAMGLKLPITLEAAQALKNQMGEDLCFYPIFVGDDEKGMHLMEEIANIGKCGFVTK 220 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILIS------IIDQR---------NTPMFDKSSSI 243 ++G V+ V ++ I+ FD SI Sbjct: 221 ADKLMTGSGMGQFVQDVFLTKKP---MVQAPAPTPIVATPPAVEKAWVVGEAYFDFDKSI 277 Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P L K+ +VL + I+GHTD+ ++ LSL RA + L+ Sbjct: 278 IKPAGFEFLDKVVDVLKSRPALFVKIQGHTDS--IGTRKYND-ALSLRRAKAVKTYLINK 334 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 G+ ++R+ GFA + ++ + NRR+++ Sbjct: 335 GIDKNRL-SCEGFAFSKPVASNKTAEGRAMNRRVEL 369 >gi|161504616|ref|YP_001571728.1| hypothetical protein SARI_02730 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865963|gb|ABX22586.1| hypothetical protein SARI_02730 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 574 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S T +++ + + A +I + GHTD + + N LSL RA Sbjct: 443 SLFDSGKSALKAGSTRMLVNSLVGIKAKPGWLIVVSGHTDNT---GNPKLNQTLSLKRAE 499 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + +G + + G+ R +D + NRR++I + + Sbjct: 500 AVRNWMRDTGDVPESCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 549 >gi|78356732|ref|YP_388181.1| OmpA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219137|gb|ABB38486.1| OmpA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 352 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 84/280 (30%), Gaps = 20/280 (7%) Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 + F G + + + K D I T L + + Sbjct: 80 ASMHMFAPYEEVVPYGPYSKSGFEQGIMSLKADKEIFARRTPMGDGLNMLRPAADNMARN 139 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDL-------CKSTDLEKSINKEENYFLPPLS 179 I S E L ++ + +++ ++ Sbjct: 140 AAVIIVSDGESNFGSDPVAQAQALYESAPGLCLHVVSVAETEAGKAVLDRIAALKGCSVT 199 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + ++ L K + + V+ T I++ + F Sbjct: 200 ADAATLLADEQALNGFVKDVFYDTREVKKAPAPAPVVTPETEEVIVLRSVQ------FAF 253 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ E VL + ++ +++ GHTD++ N +LS RA S Sbjct: 254 DSAEISNEAEDVLTEAATLIEEHAGKQVTLAGHTDST---GPEAYNQKLSQRRAESVKAF 310 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L K GV +RI + GF K ++ NRR++I Sbjct: 311 LAKEGVDANRIKAV-GFGESEPKFDNNTAEGRKLNRRVEI 349 >gi|21241777|ref|NP_641359.1| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306] gi|294627877|ref|ZP_06706456.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666871|ref|ZP_06732103.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21107151|gb|AAM35895.1| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306] gi|292597791|gb|EFF41949.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603388|gb|EFF46807.1| outer membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 365 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAVSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365 >gi|91213065|ref|YP_543051.1| putative outer membrane lipoprotein [Escherichia coli UTI89] gi|117625836|ref|YP_859159.1| putative outer membrane lipoprotein [Escherichia coli APEC O1] gi|218560629|ref|YP_002393542.1| outer membrane lipoprotein [Escherichia coli S88] gi|306816094|ref|ZP_07450232.1| putative outer membrane lipoprotein [Escherichia coli NC101] gi|331649382|ref|ZP_08350468.1| inner membrane lipoprotein YiaD [Escherichia coli M605] gi|91074639|gb|ABE09520.1| putative outer membrane protein [Escherichia coli UTI89] gi|115514960|gb|ABJ03035.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218367398|emb|CAR05180.1| putative outer membrane lipoprotien [Escherichia coli S88] gi|281180597|dbj|BAI56927.1| conserved hypothetical protein [Escherichia coli SE15] gi|294489870|gb|ADE88626.1| OmpA family protein [Escherichia coli IHE3034] gi|305850490|gb|EFM50947.1| putative outer membrane lipoprotein [Escherichia coli NC101] gi|307628634|gb|ADN72938.1| putative outer membrane lipoprotein [Escherichia coli UM146] gi|323949796|gb|EGB45680.1| OmpA family protein [Escherichia coli H252] gi|330909615|gb|EGH38129.1| outer membrane protein A precursor [Escherichia coli AA86] gi|331041880|gb|EGI14024.1| inner membrane lipoprotein YiaD [Escherichia coli M605] Length = 219 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGSHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|163737113|ref|ZP_02144531.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] gi|161389717|gb|EDQ14068.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] Length = 219 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 22/215 (10%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S+ +L + D ++ + + + I Sbjct: 22 TDPATIGTPGSKTQNGALIGGLIGAGVGAAANDSDRGLGAVTGALVGAAAGSVI-----G 76 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L +++ ++S G+ T +++S+ N F S+ P Sbjct: 77 NQLDAQERELRQSISN-------DGISIVNTGDRLIVSL---PNDLTFATDSAAVSPAVR 126 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ L + + GHTD+ A N LS RA + + GV +R Sbjct: 127 SDLNKVASSLVRYPNSQVQVIGHTDSD---GDAGYNQGLSERRANAVADQIQAGGVPYNR 183 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 + +I G + ++ + NRR++I+V + Sbjct: 184 V-QIIGRGESQPVASNLTAEGKARNRRVEIVVIPQ 217 >gi|163782256|ref|ZP_02177254.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882289|gb|EDP75795.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hydrogenivirga sp. 128-5-R1-1] Length = 313 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S++ P + L++I L + + + + GHTD + N +LSL RA + Sbjct: 211 FDHGSAVIKPGSEKTLKEIARYLKMNPKARLYVVGHTDGT---GSYDYNLKLSLKRAEAV 267 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + L+K G+S R+ + G + + NRR++++ Sbjct: 268 VRRLVKEYGISPKRLKAV-GVGPVAPVDTNRTPEGRARNRRVELV 311 >gi|332185595|ref|ZP_08387343.1| rickettsia 17 kDa surface antigen family protein [Sphingomonas sp. S17] gi|332014573|gb|EGI56630.1| rickettsia 17 kDa surface antigen family protein [Sphingomonas sp. S17] Length = 225 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P+ L ++ ++L+ I + GHTD++ N LS RA + Sbjct: 116 FAYDSSTVQPQFRQTLDQVADILSQYKQTYIDVYGHTDST---GSDSYNQALSERRAVAV 172 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED-RQG 343 L GV RI GF + ++D +ANRR++I + R+G Sbjct: 173 ADYLASRGVQPARIG-TRGFGKSQPIASNDTDAGRAANRRVEIKIVPIREG 222 >gi|145299366|ref|YP_001142207.1| OmpA family protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142852138|gb|ABO90459.1| OmpA family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 162 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 12/146 (8%) Query: 200 SSTLSGLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 S GL+A+ I +K F T G + D N +F S P+T V+++K+G Sbjct: 23 QSAPRGLMAEQIGVLKEQGFRLTDEGWTL---DFSNRVLFANDSEALNPDTRVLVEKLGM 79 Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L I GHTD++ N +LSL RA S VL+ G+ + I G Sbjct: 80 TLLGVGLNKARIDGHTDSN---GPEAYNDQLSLKRAKSVADVLVPVGMQPANLD-IRGRG 135 Query: 317 HHRLK--IASDPMNSANRRIDILVED 340 + + NRR+ I++ + Sbjct: 136 ERDPVADNKTAAGRAENRRVGIIISN 161 >gi|240145494|ref|ZP_04744095.1| putative chemotaxis protein MotB [Roseburia intestinalis L1-82] gi|257202309|gb|EEV00594.1| putative chemotaxis protein MotB [Roseburia intestinalis L1-82] Length = 267 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 8/178 (4%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD-NIVKGVLFETTRTGILI 226 +K + +E + + K++ + ++K+S L +A I V + +++ Sbjct: 86 DKANSETDQETDEENDVVEEYKEQALEESEKMSEQLEDAIARYGIQDQVEVDFNAQYVML 145 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIAR-DN 284 ++ +FD + E ++ K+G+++ +I + GHTD P + DN Sbjct: 146 NM---NGALLFDSGHAEIRSEAYPLIDKLGKLIEPYQDNIIEVEGHTDNVPIHSAKYEDN 202 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L E K SG + + S NRR+ I + + Sbjct: 203 DVLSFYRARAVTDYLRDITTVEPAHLKASGRGEYVPVADNTTQEGRSRNRRVIIKIYN 260 >gi|78046598|ref|YP_362773.1| OmpA family outer membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925345|ref|ZP_08186747.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas perforans 91-118] gi|78035028|emb|CAJ22673.1| OmpA family outer membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544223|gb|EGD15604.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas perforans 91-118] Length = 365 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAVSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365 >gi|329902399|ref|ZP_08273103.1| Outer membrane lipoprotein omp16 precursor [Oxalobacteraceae bacterium IMCC9480] gi|327548814|gb|EGF33448.1| Outer membrane lipoprotein omp16 precursor [Oxalobacteraceae bacterium IMCC9480] Length = 224 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R+++ + + G + +T + ++I + FD + S P+ Sbjct: 82 RMENQKQAMEQATRGTGVQ------VTQTADNRLKLAI---PSDISFDTNRSDIKPDFRP 132 Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL + G L ++ V++I GHTD + I LS+DRA L+ GV+ R Sbjct: 133 VLDRFGNSLNDNASTVVTIIGHTDNTGSAAINDP---LSVDRAGRTRDYLISRGVAPYRF 189 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + I G + +++ + NRR++I V +RQ Sbjct: 190 T-IEGRGENDPIASNNDSTGRARNRRVEIFVAERQ 223 >gi|317151982|ref|YP_004120030.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942233|gb|ADU61284.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 273 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 +L L +NI + F + R + I+ + +F + VL V A Sbjct: 86 ESLKALKWENIDDDINFRSNRF---VQILSIDASLLFGPDAVTLSESGQAVLDGYMPVFA 142 Query: 261 HSTEVISIRGHT---------DASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRI 309 + + GHT D P + + W++SL RA + Y+ L+ G+ + Sbjct: 143 QVQYPLLLAGHTSQLRDELGADYKPGDDEENPDLSWKISLSRALAVYRHLIDRGMRPG-M 201 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++ GF + + NRR+DI+++ R Sbjct: 202 LRVEGFGKYMPFYTQTTVESRARNRRVDIVLDKR 235 Score = 46.4 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKN 75 + KK + W I ++D MT+++ FF+++ ++ D A+ FG Sbjct: 1 MAKKGKKHICEE-MPPWMITFSDVMTLMLTFFVLLVSMSHIDPRRKLVALGSIIGTFGWE 59 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHI 106 AS +F +++ ID E + Sbjct: 60 --DASYEVFSKKDTRRTVEPGPIDSGDLESL 88 >gi|23502081|ref|NP_698208.1| OmpA family protein [Brucella suis 1330] gi|161619159|ref|YP_001593046.1| OmpA/MotB domain-containing protein [Brucella canis ATCC 23365] gi|163843469|ref|YP_001627873.1| OmpA/MotB domain-containing protein [Brucella suis ATCC 23445] gi|225852700|ref|YP_002732933.1| OmpA/MotB domain-containing protein [Brucella melitensis ATCC 23457] gi|254701944|ref|ZP_05163772.1| OmpA family protein [Brucella suis bv. 5 str. 513] gi|254704489|ref|ZP_05166317.1| OmpA family protein [Brucella suis bv. 3 str. 686] gi|254706615|ref|ZP_05168443.1| OmpA family protein [Brucella pinnipedialis M163/99/10] gi|254710275|ref|ZP_05172086.1| OmpA family protein [Brucella pinnipedialis B2/94] gi|254714272|ref|ZP_05176083.1| OmpA family protein [Brucella ceti M644/93/1] gi|254717709|ref|ZP_05179520.1| OmpA family protein [Brucella ceti M13/05/1] gi|256031769|ref|ZP_05445383.1| OmpA family protein [Brucella pinnipedialis M292/94/1] gi|256044854|ref|ZP_05447758.1| OmpA family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256061284|ref|ZP_05451434.1| OmpA family protein [Brucella neotomae 5K33] gi|256113758|ref|ZP_05454562.1| OmpA family protein [Brucella melitensis bv. 3 str. Ether] gi|256159939|ref|ZP_05457657.1| OmpA family protein [Brucella ceti M490/95/1] gi|256255170|ref|ZP_05460706.1| OmpA family protein [Brucella ceti B1/94] gi|256369628|ref|YP_003107138.1| OmpA family protein [Brucella microti CCM 4915] gi|260168903|ref|ZP_05755714.1| OmpA family protein [Brucella sp. F5/99] gi|260565544|ref|ZP_05836028.1| bacterial outer membrane protein [Brucella melitensis bv. 1 str. 16M] gi|260566267|ref|ZP_05836737.1| bacterial outer membrane protein [Brucella suis bv. 4 str. 40] gi|261219551|ref|ZP_05933832.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1] gi|261314075|ref|ZP_05953272.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261317837|ref|ZP_05957034.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94] gi|261322046|ref|ZP_05961243.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1] gi|261752512|ref|ZP_05996221.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513] gi|261755171|ref|ZP_05998880.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686] gi|261758395|ref|ZP_06002104.1| bacterial outer membrane protein [Brucella sp. F5/99] gi|306840330|ref|ZP_07473102.1| OmpA family protein [Brucella sp. BO2] gi|306844105|ref|ZP_07476699.1| OmpA family protein [Brucella sp. BO1] gi|23348039|gb|AAN30123.1| OmpA family protein [Brucella suis 1330] gi|161335970|gb|ABX62275.1| OmpA/MotB domain protein [Brucella canis ATCC 23365] gi|163674192|gb|ABY38303.1| OmpA/MotB domain protein [Brucella suis ATCC 23445] gi|225641065|gb|ACO00979.1| OmpA/MotB domain protein [Brucella melitensis ATCC 23457] gi|255999790|gb|ACU48189.1| OmpA family protein [Brucella microti CCM 4915] gi|260151612|gb|EEW86706.1| bacterial outer membrane protein [Brucella melitensis bv. 1 str. 16M] gi|260155785|gb|EEW90865.1| bacterial outer membrane protein [Brucella suis bv. 4 str. 40] gi|260924640|gb|EEX91208.1| OmpA/MotB domain-containing protein [Brucella ceti M13/05/1] gi|261294736|gb|EEX98232.1| OmpA/MotB domain-containing protein [Brucella ceti M644/93/1] gi|261297060|gb|EEY00557.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis B2/94] gi|261303101|gb|EEY06598.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261738379|gb|EEY26375.1| bacterial outer membrane protein [Brucella sp. F5/99] gi|261742265|gb|EEY30191.1| OmpA/MotB domain-containing protein [Brucella suis bv. 5 str. 513] gi|261744924|gb|EEY32850.1| OmpA/MotB domain-containing protein [Brucella suis bv. 3 str. 686] gi|306275548|gb|EFM57280.1| OmpA family protein [Brucella sp. BO1] gi|306289729|gb|EFM60918.1| OmpA family protein [Brucella sp. BO2] Length = 220 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 90 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + ++ Sbjct: 149 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 204 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 205 AQNRRVEIQISPLRG 219 >gi|298372336|ref|ZP_06982326.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275240|gb|EFI16791.1| OmpA domain protein [Bacteroidetes oral taxon 274 str. F0058] Length = 705 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + VL + +++ ++ + I GHTD+ N LS RA + Sbjct: 595 FDTGKSTIKSVSYGVLNMVVDIMKNNPDYNLVIAGHTDSQ---GNDDFNMTLSDKRAAAV 651 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 Q L+ GV + R+ I G+ + + + NRR++ V Sbjct: 652 RQYLIDKGVEDARLQSI-GYGETKPVATNKTAKGRAQNRRVEFTV 695 >gi|288935830|ref|YP_003439889.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|288890539|gb|ADC58857.1| OmpA/MotB domain protein [Klebsiella variicola At-22] Length = 568 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +I + +FD + P T ++ + ++ A +I + GHTD+ + N Sbjct: 429 DVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSV---GEEKANQ 485 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA S + +G D + G+ R +D + NRR++I + + Sbjct: 486 LLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQ 543 >gi|71734248|ref|YP_276006.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487118|ref|ZP_05641159.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626062|ref|ZP_06459016.1| ompA family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646239|ref|ZP_06477582.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298488307|ref|ZP_07006339.1| Outer membrane lipoprotein omp16 precursor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554801|gb|AAZ34012.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157129|gb|EFH98217.1| Outer membrane lipoprotein omp16 precursor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323146|gb|EFW79235.1| ompA family protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329582|gb|EFW85571.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867556|gb|EGH02265.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878322|gb|EGH12471.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330892526|gb|EGH25187.1| ompA family protein [Pseudomonas syringae pv. mori str. 301020] gi|330985082|gb|EGH83185.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009256|gb|EGH89312.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 260 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N E ++ + + D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPEATKVAALETKDASEWLAKAEQAFRNDDDVKKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKADLKPTAQGDIGKLAAFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248 >gi|152966787|ref|YP_001362571.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216] gi|151361304|gb|ABS04307.1| OmpA/MotB domain protein [Kineococcus radiotolerans SRS30216] Length = 471 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVI 266 A+++ V ET+ G +++ +F S+ PE VL+ +VL + Sbjct: 256 AEDLQGTVRTETSDAGARVALAAD---VLFALDSAELSPEARAVLETAATDVLTRRPGPV 312 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--S 324 ++ GHTD N LS RA + VL + D ++ G + S Sbjct: 313 AVVGHTDDQ---GADDYNLDLSRRRAQAVADVL-GPLLGADYPLQVDGRGEAEPAVPGPS 368 Query: 325 DPMNSANRRIDILV 338 + NRR++++V Sbjct: 369 TEARARNRRVELVV 382 >gi|29346604|ref|NP_810107.1| OmpA family outer membrane protein [Bacteroides thetaiotaomicron VPI-5482] gi|29338500|gb|AAO76301.1| outer membrane protein, OmpA family [Bacteroides thetaiotaomicron VPI-5482] Length = 266 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 94 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 142 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDR 291 ++ L K VL + + +SI G+TD +RN + N LS +R Sbjct: 143 TGNATLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSRQKNLNLSQER 202 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 203 AQSVASYLLNCGVSSNQIKGVQGMGESDPIASNDTAAGREQNRRVEV 249 >gi|313497484|gb|ADR58850.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 239 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I++ D MF S+ P LQ + L T + + GHTD+ Sbjct: 127 VITL-DDNGAVMFAFDSAELTPAAQQRLQGLVAKLNSPTVAKVRVIGHTDSV---GSDSY 182 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 N LS RA S + L+ G+ +++ G ++ + NRR+++ + Sbjct: 183 NQALSERRASSVAEYLIGQGLEMGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 238 >gi|222035267|emb|CAP78012.1| Inner membrane lipoprotein yiad [Escherichia coli LF82] gi|312948118|gb|ADR28945.1| putative outer membrane lipoprotein [Escherichia coli O83:H1 str. NRG 857C] gi|320193935|gb|EFW68568.1| Outer membrane protein A precursor [Escherichia coli WV_060327] Length = 219 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGSHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTSEGKAQNRRVEITL 216 >gi|218887301|ref|YP_002436622.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758255|gb|ACL09154.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 311 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 43/242 (17%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S + +L+R + + E L PL ++ +++L Sbjct: 67 SMSSMNRVTLSRIGSHFGEAGEQALGVTGSVPERIRLLEPLLARPAQVFAHQREIKELLF 126 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + G+ + K + G+++++ D +F + +L + E Sbjct: 127 PGAELPPGIDRSTLDKNLRILEHPEGVVLALTDD---LLFAPGQWQLREASRPLLGMLAE 183 Query: 258 VLAHSTEVISIRGHTDAS-----------------PFRNIARDNWRLSLDRAYSAYQVLM 300 VL + T ++I GH+D + L+ RA + + + Sbjct: 184 VLEYVTADVAIAGHSDPRTEGVSALEQAAGAGGGAGVVTGDAIGYELAGRRALTVLEYFV 243 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNS----------------------ANRRIDILV 338 + + R ++G+ R +A P + NRR++ILV Sbjct: 244 QRKLDPARF-SVAGYGPDRPSLAGQPPSPGAPGVPEASGEPDAAAGSSDPDRNRRVEILV 302 Query: 339 ED 340 + Sbjct: 303 KT 304 >gi|109947291|ref|YP_664519.1| flagellar motor protein MotB [Helicobacter acinonychis str. Sheeba] gi|109714512|emb|CAJ99520.1| flagellar motor rotation protein MotB [Helicobacter acinonychis str. Sheeba] Length = 253 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 13/156 (8%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLP 246 ++ +S S + N + G ++ IDQ + +F+ + S Sbjct: 77 QEEEQTASESSKPASQNTESKITITRKGEGSVLEQIDQGSILKLPSNLLFENAVSDAINQ 136 Query: 247 ETIVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSG 303 + ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ G Sbjct: 137 DMMLYIERIAKIIQKLPKRVHINVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLMQYG 196 Query: 304 VSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 V D++ S + +D N R++I Sbjct: 197 VDPDQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + KI T + + Sbjct: 60 PKPEAMQPVVVIPPDSGQEEEQTASESSKPASQNTESKITITRKGEGS 107 >gi|119385600|ref|YP_916655.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans PD1222] gi|119376195|gb|ABL70959.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222] Length = 215 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + G +S++ + +F S+ + L I L I I GHTD++ Sbjct: 92 IQIVNHGTHLSVV-MPESTLFATDSAAVGAQGQNDLYTIARNLTQYPNSRIQIVGHTDST 150 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 A N LS RA S +L GV++ R++ + G + ++D + NRR Sbjct: 151 ---GSAAYNQDLSERRARSVAGILTAGGVAQSRVTTL-GRGATQPVASNDTAAGRAQNRR 206 Query: 334 IDILVED 340 ++IL+ Sbjct: 207 VEILITP 213 >gi|330504604|ref|YP_004381473.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328918890|gb|AEB59721.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 261 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 90/236 (38%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE------ 170 S + +N L + QS T+++++ + ++K K+ Sbjct: 21 SHQPNANLESARSNFSSLQSDPQSSKVAALETKEAQEWLNKADKAYMDKEDEKKVDQLAY 80 Query: 171 -ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + + L + A++ + L A + + + + T G L++ Sbjct: 81 LTNQRVEVAKQTIALRTAEAELKNSSAQRAQALLDARDAQIRKLQESLNAKQTERGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +FD + + + + ++ L + E + + G+TD+ A N Sbjct: 141 FGD----VLFDFNKADLKSSALPNITQLARFLQENPERQVIVEGYTDSV---GSASYNQG 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS RA S + L+++GV RI G+ +SD + NRR+++ + + Sbjct: 194 LSERRAESVRRALIRAGVEPTRIVA-QGYGKEYPVADNSSDSGRAQNRRVEVTISN 248 >gi|291276590|ref|YP_003516362.1| putative flagellar motor protein [Helicobacter mustelae 12198] gi|290963784|emb|CBG39619.1| putative flagellar motor protein [Helicobacter mustelae 12198] Length = 258 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 86/209 (41%), Gaps = 14/209 (6%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 S Q++ +L + K D + + + + P ++ K ++ A Sbjct: 38 SAQNKAKVEALKTEFIKIFDATPKPETIQPVTRI--PPNPGDVTDQEDGDKAQQSQDSNA 95 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP-LPETIVVLQKI 255 K + L I +G + E GI + + + +FD S+ E L+ + Sbjct: 96 VKTVENIVQL-EQIIQEGGVLEQIEHGITLQL---PSDLLFDNGSAELANDEMKDYLRNM 151 Query: 256 GEVLAHST--EVISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 V+ I+++G+TD +P + ++++ L+ RA + VL++ GV++ ++ Sbjct: 152 ANVIKKFPPQVSINVKGYTDNAPLPPNSPYKNHYLLAAARAMAVMNVLIQQGVNQKQL-S 210 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILV 338 + + + ++ + N R++I + Sbjct: 211 FTSYGKNSPIAPNNTPANRAKNNRVEIYL 239 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F + Sbjct: 1 MAKKAKKQECPA-GEKWAVPYADFLSLLLALFIALYAISAQNKAKVEALKTEF----IKI 55 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 A+ Q P R N D++ E K + + +LE I Sbjct: 56 FDATPKPETIQ-PVTRIPPNPGDVTDQEDGDKAQQSQDSNAVKTVENIVQLEQIIQEGGV 114 Query: 137 SQQSEHC 143 +Q EH Sbjct: 115 LEQIEHG 121 >gi|86138080|ref|ZP_01056655.1| hypothetical protein MED193_01095 [Roseobacter sp. MED193] gi|85825107|gb|EAQ45307.1| hypothetical protein MED193_01095 [Roseobacter sp. MED193] Length = 347 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I+ Q + F +S + L + ++++ VI + GHTD + A Sbjct: 233 RFDILSQSRSVNFAPGTSRLDQRSTSFLDSLFDIISRCPAMVIEVGGHTDD---KGSAAA 289 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 N RLS RA S + L G++ DR+ + G+ + ++ + NRRI V + Sbjct: 290 NTRLSQKRASSVVRYLSDKGIARDRLQSV-GYGESTPLVPNNSAQNRAKNRRIAFKVLN 347 >gi|209964212|ref|YP_002297127.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW] gi|7025367|gb|AAF35853.1|AF220007_1 polar flagellar motor protein MopB [Rhodospirillum centenum] gi|209957678|gb|ACI98314.1| chemotaxis MotB protein, putative [Rhodospirillum centenum SW] Length = 239 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 10/130 (7%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 VL +++++ +F + P + L +G V + + + GHTD Sbjct: 108 QVLITRRDGRLVLAL---PADLLFAPGDAALSPAGLRALFVLGGVAGNIGNALEVVGHTD 164 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH-----HRLKIASDPMN 328 P + NW LSL RA + L +G R + G A + Sbjct: 165 PRPAGSRWPSNWELSLARAQAVADALHGAGYL--RAITVRGQADAQFPETAPFLPVAERM 222 Query: 329 SANRRIDILV 338 RR+D++V Sbjct: 223 RLARRVDVIV 232 Score = 42.6 bits (98), Expect = 0.089, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 31/90 (34%) Query: 30 LGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNP 89 +W + + D + +++ FF++++ ++ D +A+ + N Sbjct: 19 GRAWLVSFTDLVCLMLTFFVMLYAMSDPADPRYRALAGGLHGDLAVRAEGEAAPEAAFNV 78 Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTN 119 + + IDL + + + Sbjct: 79 DRLNREQAIDLGYLGRVFETQMAGHPELAQ 108 >gi|307312753|ref|ZP_07592383.1| OmpA/MotB domain protein [Escherichia coli W] gi|306907188|gb|EFN37694.1| OmpA/MotB domain protein [Escherichia coli W] gi|315062099|gb|ADT76426.1| Putative outer membrane protein/OmpA domain protein [Escherichia coli W] gi|323377319|gb|ADX49587.1| OmpA/MotB domain protein [Escherichia coli KO11] Length = 550 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + +FD + T V++ + Sbjct: 399 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDTL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|116623978|ref|YP_826134.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116227140|gb|ABJ85849.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 388 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + FD S+ P + L I VL + + I G+TD A N RLS Sbjct: 280 TMDQIAFDSGSATLKPASQTQLNNIATVLNNCPGVRLDIAGYTDNV---GSAESNLRLSR 336 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 +RA S VL+K GV +R + G+ + + + NRR+ Sbjct: 337 NRANSVVAVLVKEGVPRERFNA-EGYGEEDPVADNSIEQGRAQNRRV 382 >gi|294782159|ref|ZP_06747485.1| OmpA family protein [Fusobacterium sp. 1_1_41FAA] gi|294480800|gb|EFG28575.1| OmpA family protein [Fusobacterium sp. 1_1_41FAA] Length = 212 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 17/153 (11%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + A+++ + L G A+ +++++ F S+ L Sbjct: 74 DNQARELKAALKGTQAE-------VRNDGNALVVNL---PGGVTFASDSANISSGFYSAL 123 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + L E I + G+TD++ N LS RA S Q L+ GVS +RI Sbjct: 124 NGVAQTLVRYPETRIQVNGYTDST---GGDAHNQELSQRRANSVAQYLISQGVSSNRIVA 180 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +GF ++ ANRR+++ + Q Sbjct: 181 -NGFGSLNPIASNATPEGRQANRRVEVRILPAQ 212 >gi|225627675|ref|ZP_03785712.1| OmpA family protein [Brucella ceti str. Cudo] gi|225617680|gb|EEH14725.1| OmpA family protein [Brucella ceti str. Cudo] Length = 243 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 113 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 171 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + ++ Sbjct: 172 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 227 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 228 AQNRRVEIQISPLRG 242 >gi|21230404|ref|NP_636321.1| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769602|ref|YP_244364.1| outer membrane protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992813|ref|YP_001904823.1| OmpA family outer membrane protein [Xanthomonas campestris pv. campestris str. B100] gi|21111963|gb|AAM40245.1| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574934|gb|AAY50344.1| outer membrane protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734573|emb|CAP52783.1| OmpA family outer membrane protein [Xanthomonas campestris pv. campestris] Length = 365 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ + +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAVSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 365 >gi|260883956|ref|ZP_05895570.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297248510|ref|ZP_06932228.1| outer membrane protein [Brucella abortus bv. 5 str. B3196] gi|260873484|gb|EEX80553.1| OmpA/MotB domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297175679|gb|EFH35026.1| outer membrane protein [Brucella abortus bv. 5 str. B3196] Length = 232 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 102 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 160 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + +++ Sbjct: 161 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-SVIGYGASQPIVSNATPEGR 216 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 217 AQNRRVEIQISPLRG 231 >gi|254483376|ref|ZP_05096606.1| OmpA family protein [marine gamma proteobacterium HTCC2148] gi|214036360|gb|EEB77037.1| OmpA family protein [marine gamma proteobacterium HTCC2148] Length = 214 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH- 261 + ++G + R G I +I F+ S VL +G+VL+ Sbjct: 76 VQEAKLKEELQGTGVQVVREGDNIRLI-MPGNITFETDSYNLRSSFYSVLNSVGQVLSKY 134 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + + GHTD + + N LS RA S L V R+ + G + Sbjct: 135 ADTTLRVSGHTDNT---GSRQYNQTLSERRAGSVADYLATREVDRARML-VQGMGFDQPI 190 Query: 322 IAS--DPMNSANRRIDILVEDRQ 342 + + NRR+++ + Q Sbjct: 191 ADNGSAAGRAQNRRVELYILPNQ 213 >gi|91787475|ref|YP_548427.1| OmpA/MotB [Polaromonas sp. JS666] gi|91696700|gb|ABE43529.1| OmpA/MotB [Polaromonas sp. JS666] Length = 227 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 +KK+ + + GV T + + D + FD + P +L + Sbjct: 81 SKKMQEQKAAMERATAGTGVAVSQTPDN-RLKL-DIPSDVSFDVGRAAIKPNFAPILNQF 138 Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + ++I GHTD++ I LS+DRA +A L+ GV+ RI G Sbjct: 139 ATSLNQNQVTTVTIIGHTDSTGSDAINNP---LSVDRANAARDYLVSRGVARTRI-ATDG 194 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 ++ NRR++I V Sbjct: 195 RGSREPVADNNTQQGRDKNRRVEIYV 220 >gi|13472147|ref|NP_103714.1| hypothetical protein mlr2348 [Mesorhizobium loti MAFF303099] gi|14022892|dbj|BAB49500.1| mlr2348 [Mesorhizobium loti MAFF303099] Length = 442 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF--RNIAR 282 II N +F S ++Q I +V+ I+I GHTD N Sbjct: 322 IIQSSNPELFQSSRPTLSQGYEPLIQSIAKVILANQELIGNITIVGHTDNVRLQRSNPLA 381 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 N RLS RA + +L+++GV ++RI G A + + NRR+++LVE Sbjct: 382 SNQRLSEARAQTIADLLVQAGVPQERIHS-EGRADSDPVADNSTREGRALNRRVEVLVEK 440 Query: 341 R 341 R Sbjct: 441 R 441 >gi|163760609|ref|ZP_02167690.1| OmpA/MotB [Hoeflea phototrophica DFL-43] gi|162282224|gb|EDQ32514.1| OmpA/MotB [Hoeflea phototrophica DFL-43] Length = 588 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 22/224 (9%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 +Q + + + + + L S +D S E L Sbjct: 384 DDRQRVAAGAPGGFETAALAALQALSRLDEASVVLRDGALSVRGEALSGNAAADLQRQLE 443 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + A ++ + L S LSG N++ +L T FD Sbjct: 444 ADLPEAFAAQQSVA-LKPLPSEDLSGPSCQNVLNQLLAANTIR--------------FDT 488 Query: 240 SSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + + L +I + I GHTDA N LS RA + Sbjct: 489 GQAGIQHHSFGFLDRIAFAARQCRDVRLEISGHTDAD---GDEGANQTLSERRAEAVVAY 545 Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 ++ +GV DR+ I G+ R + D +ANRRI+I V + Sbjct: 546 MVAAGVGPDRVVAI-GYGESRPVADNETDTGKAANRRIEIRVVN 588 >gi|26987858|ref|NP_743283.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|24982561|gb|AAN66747.1|AE016303_2 OmpA family protein [Pseudomonas putida KT2440] Length = 264 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I++ D MF S+ P LQ + E L T + + GHTD+ Sbjct: 152 VITL-DDNGAVMFAFDSAELTPAAQQRLQGLVEKLNSPTVAKVRVIGHTDSV---GSDSY 207 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 N LS RA S + L+ G+ +++ G ++ + NRR+++ + Sbjct: 208 NQALSERRASSVAEYLIGQGLEMGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 263 >gi|585710|sp|P37726|PORF_PSEFL RecName: Full=Outer membrane porin F; AltName: Full=Root adhesin; Flags: Precursor gi|5668610|gb|AAD45981.1| OprF [Pseudomonas fluorescens] Length = 326 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + +A + + GHTD+ N +LS RA Sbjct: 221 FDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI---GPDAYNQKLSQRRADRV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 QVL+K GV+ RI+ + G+ R A++ + NRR++ VE Sbjct: 278 KQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASVE 322 >gi|332996326|gb|EGK15953.1| inner membrane lipoprotein yiaD [Shigella flexneri VA-6] Length = 219 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|300718501|ref|YP_003743304.1| OmpA family protein [Erwinia billingiae Eb661] gi|299064337|emb|CAX61457.1| OmpA family protein [Erwinia billingiae Eb661] Length = 500 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 R+K L +A + +S G + GI+ + D MFD S+ Sbjct: 78 QNREKALAKIAAEEHIVISSSPLQAQESGGKKDV---GIVAQVEDN---GMFDTDSAQLS 131 Query: 246 PETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 + + ++K+ V+ V+ I GHTDA+ + N +LS RA S +VL ++G Sbjct: 132 VDGLRQVRKLAAVMKQDDQQGVVLIVGHTDATGNASW---NQKLSESRAQSVGRVLQQAG 188 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 ++ R+ G R + SANRR++I+ Sbjct: 189 LNPQRLY-FQGAGSSRPIADNATLAGRSANRRVEIV 223 >gi|157736742|ref|YP_001489425.1| outer membrane fibronectin-binding protein [Arcobacter butzleri RM4018] gi|157698596|gb|ABV66756.1| outer membrane fibronectin-binding protein [Arcobacter butzleri RM4018] Length = 338 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + + +V+ + +I HTD+ N +LS RA SA Sbjct: 236 FDTDKSVIKDSYNSRINEFAKVMKADPKLKANIEAHTDSV---GTDAYNQKLSERRATSA 292 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L+ +GV +DRI + G+ R ++D + NRR++ Sbjct: 293 VNALVAAGVEKDRIKAV-GYGESRPIASNDTVEGRAENRRVE 333 >gi|258625264|ref|ZP_05720172.1| outer membrane protein OmpA [Vibrio mimicus VM603] gi|258582437|gb|EEW07278.1| outer membrane protein OmpA [Vibrio mimicus VM603] Length = 328 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ + + + + +V+ V T T ++ F +S+ P L K+ Sbjct: 185 EQRPAEPAPVAEEPVVEKVAVTKTFT------FQHLDSGTFANNSAELKPSMETKLDKLV 238 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L + + + GHTD++ N +LS RA + + L GV RI+ G Sbjct: 239 GYLNQYPQAKVEVVGHTDSN---GSEAYNQKLSEKRAQAVAKALEAQGVDAARITA-KGQ 294 Query: 316 AHHRLKIASDPMNSA--NRRIDILV 338 ++ NRR+++++ Sbjct: 295 DESNPIASNATAEGREKNRRVELVI 319 >gi|146309839|ref|YP_001174913.1| putative outer membrane lipoprotein [Enterobacter sp. 638] gi|145316715|gb|ABP58862.1| OmpA/MotB domain protein [Enterobacter sp. 638] Length = 220 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I I++ + FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMQGTGVSVTRNGDNI-ILNMPSNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++ +++ G+TD++ N RLS RA S L+ GV+ +RI + SG Sbjct: 142 SKTAVNVIGYTDST---GSQDLNMRLSQQRADSVASSLITQGVAANRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 +++ + NRR++I + Q Sbjct: 198 ASNNTAEGKAQNRRVEITLSPIQ 220 >gi|89055525|ref|YP_510976.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88865074|gb|ABD55951.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 487 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V L R G + ++ N F S+ + I V +IG+ LA +++ GH Sbjct: 332 VDDGLVRLYREGDAV-LVRVANAGAFGSGSAEIEDDFIDVFDRIGQALAAEDFAVTVLGH 390 Query: 272 TDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 TD R +N+ LS RA + VL++ V R+ I G R ++ Sbjct: 391 TDNVAIRTAPFPNNYFLSRARANAVRDVLLQY-VDPVRVD-IEGQGPDRPIASNITPAGQ 448 Query: 329 SANRRIDILVED 340 ANRR +ILV + Sbjct: 449 EANRRTEILVRE 460 >gi|319943060|ref|ZP_08017343.1| lipoprotein [Lautropia mirabilis ATCC 51599] gi|319743602|gb|EFV96006.1| lipoprotein [Lautropia mirabilis ATCC 51599] Length = 319 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 79/241 (32%), Gaps = 16/241 (6%) Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKS 160 S + G ++ + + + + + + Sbjct: 10 SAQSLTVQARPQTGTGRGARQAVVTAVAVALLVAGCAGMDDTQRRTAAGAGIGAAVGAAL 69 Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 N L + I +++++ + + +G GV T Sbjct: 70 GGNAAGGKGVRNGALIGGAIAGIGTYIWSRQMEEQKRAMEEATAGT-------GVQVTQT 122 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279 R +L +D + F +S+ LP +L + + L + + I GHTD++ Sbjct: 123 RENLL--QLDIPSDISFRVNSAAILPNFQPILDRFAQTLVANPATTVQIIGHTDSTGTDA 180 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 I LS++RA SA L+ GV RI I G + + NRR++I Sbjct: 181 INNP---LSVNRAASARDYLVARGVQVSRIM-IDGRGSRDPIADNSTPAGRAQNRRVEIY 236 Query: 338 V 338 V Sbjct: 237 V 237 >gi|255323068|ref|ZP_05364204.1| outer membrane fibronectin-binding protein [Campylobacter showae RM3277] gi|255299930|gb|EET79211.1| outer membrane fibronectin-binding protein [Campylobacter showae RM3277] Length = 332 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 N GV+ + T +I + D FD S P+ + ++K+ + + + + Sbjct: 205 NTPAGVVVDETGCEKVIVLRDIGVNFAFD--SYKITPKYLEEIRKVANFMGENPGYRVVL 262 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD+ N +LS RA + + L + GVS D+I+ + G+ + ++ Sbjct: 263 SGHTDSV---GAEAYNQKLSEKRANAVAKALEELGVSADKITTV-GYGELKPVASNKTKE 318 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 319 GRAENRRVE 327 >gi|126741131|ref|ZP_01756812.1| hypothetical protein RSK20926_01427 [Roseobacter sp. SK209-2-6] gi|126717768|gb|EBA14489.1| hypothetical protein RSK20926_01427 [Roseobacter sp. SK209-2-6] Length = 346 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I+ + + F +S ++I L + ++++ E +I + GHTD + Sbjct: 232 RFEILSRSRSVNFAPGTSRLDGKSISFLDSLYDIVSRCPELIIEVGGHTDD---KGSEAA 288 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 N RLS RA S + L G+ +R+ G+ + + + NRRI +V++ Sbjct: 289 NIRLSQKRANSVVRYLAGKGIQTERLVA-QGYGEASPLVPNTSAANRAKNRRITFVVQN 346 >gi|289664228|ref|ZP_06485809.1| OmpA family outer membrane protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668820|ref|ZP_06489895.1| OmpA family outer membrane protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 365 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ I +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAISILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365 >gi|239818112|ref|YP_002947022.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239804689|gb|ACS21756.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 219 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 18/156 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPET 248 +R+++ +++ + G GV T + + I + FD S Sbjct: 74 QRMENQKRQMEAATQGT-------GVAVTQTPNNELKLQI---PSDVSFDVGRSNIKSNF 123 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL + L ++ + I GHTD + I LS+DRA S L+ GVS Sbjct: 124 APVLDQFASGLRNNPNAEVRIIGHTDNTGSDAINNP---LSVDRAASTRDYLVARGVSAA 180 Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 +I G H + D + NRR++I V +R Sbjct: 181 -AFRIEGRGSHEPIANNNSDAGRAQNRRVEIYVGER 215 >gi|149203135|ref|ZP_01880106.1| OmpA/MotB [Roseovarius sp. TM1035] gi|149143681|gb|EDM31717.1| OmpA/MotB [Roseovarius sp. TM1035] Length = 210 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V T + I+ +F + P L K+ + L Sbjct: 76 EAELRQQLDGDVRIVNTGDRL---ILTMPQDILFPVDGATVAPALRDDLFKVSQSLQAYP 132 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + GHTD+ A N LSL RA + VL GV R+ I G + Sbjct: 133 NTTVQVVGHTDSD---GDAGYNQGLSLRRANAVADVLASGGVPYARLRAI-GRGEDQPVA 188 Query: 323 AS--DPMNSANRRIDILVED 340 ++ + NRR++I++ Sbjct: 189 SNLTSEGKAQNRRVEIVILP 208 >gi|110597916|ref|ZP_01386198.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Chlorobium ferrooxidans DSM 13031] gi|110340493|gb|EAT58979.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Chlorobium ferrooxidans DSM 13031] Length = 229 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 N V GV E GI +++ + +F SS + ++K+ + + + I Sbjct: 88 NEVNGVQVEREGEGIRVTM---DSGILFTSGSSTLTSTSRANIEKLARIFNRYNDTKVVI 144 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTD + A N LS RA S ++L GVS+ R+S + G+ R ++D Sbjct: 145 EGHTDNT---GSAASNQLLSERRAESVAKLLSAYGVSDRRLSPV-GYGQSRPVASNDTEY 200 Query: 329 SA--NRRIDILV 338 NRR+++L+ Sbjct: 201 GRQNNRRVEVLI 212 >gi|110807356|ref|YP_690876.1| putative outer membrane lipoprotein [Shigella flexneri 5 str. 8401] gi|229088112|ref|NP_709330.3| putative outer membrane lipoprotein [Shigella flexneri 2a str. 301] gi|229089132|ref|NP_839340.2| putative outer membrane lipoprotein [Shigella flexneri 2a str. 2457T] gi|110616904|gb|ABF05571.1| putative outer membrane protein [Shigella flexneri 5 str. 8401] gi|281602912|gb|ADA75896.1| putative outer membrane protein [Shigella flexneri 2002017] gi|313647591|gb|EFS12041.1| inner membrane lipoprotein yiaD [Shigella flexneri 2a str. 2457T] gi|332750012|gb|EGJ80424.1| inner membrane lipoprotein yiaD [Shigella flexneri K-671] gi|332750169|gb|EGJ80580.1| inner membrane lipoprotein yiaD [Shigella flexneri 4343-70] gi|332751243|gb|EGJ81646.1| inner membrane lipoprotein yiaD [Shigella flexneri 2747-71] gi|332997456|gb|EGK17072.1| inner membrane lipoprotein yiaD [Shigella flexneri K-218] gi|333012432|gb|EGK31813.1| inner membrane lipoprotein yiaD [Shigella flexneri K-304] Length = 216 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 80 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 138 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 139 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 194 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 195 ASNSTAEGKAQNRRVEITL 213 >gi|295095145|emb|CBK84235.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMKGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAAVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N RLS RA S L+ GV +RI + SG Sbjct: 142 NKTAVNVIGYTDST---GSQDLNMRLSQQRADSVASSLIAQGVEANRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220 >gi|225024888|ref|ZP_03714080.1| hypothetical protein EIKCOROL_01776 [Eikenella corrodens ATCC 23834] gi|224942346|gb|EEG23555.1| hypothetical protein EIKCOROL_01776 [Eikenella corrodens ATCC 23834] Length = 219 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E R G I + + F +SS P+ + L + VL E I++ GHTD + Sbjct: 91 VEVQRQGDQIKLT-MPSGVTFATNSSSLSPDAVNSLNTVANVLTQYPETTITVAGHTDNT 149 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 R N LS +RA S L GV+ RIS + G+ +++ + NRR Sbjct: 150 ---GNDRINNPLSKNRARSVAGYLTGRGVAASRISTV-GYGSRSPVADNSTESGRAQNRR 205 Query: 334 IDILV 338 ++IL+ Sbjct: 206 VEILI 210 >gi|302187874|ref|ZP_07264547.1| ompA family protein [Pseudomonas syringae pv. syringae 642] Length = 260 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 87/237 (36%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N E ++ + + D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPEATKVAALETKDASEWLAKAEQAFRNDDDVQKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 ++ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTSQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L + + + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV RI + G + +S+ + NRR+++ + + Sbjct: 192 QSLSERRADSVRMALVRMGVDPARIVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248 >gi|315187219|gb|EFU20976.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578] Length = 430 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 16/144 (11%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L+ L +N E GI I++ F ++ LP L + E L Sbjct: 299 AEELASLGEEN-----SVEKVPEGIKITLRTLH----FLPDQAVLLPGEEAKLDILAEAL 349 Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + I + GHT LS+ RA + + L+K G+ DR+ G Sbjct: 350 KKAPDRTILVVGHTADVGKPQGQM---ALSVARAKTIVEELVKRGIEPDRLI-YLGKGGT 405 Query: 319 RLKIASDPMNSA--NRRIDILVED 340 + NRR++I + + Sbjct: 406 EPVAPNHTEEGRRLNRRVEIFLLE 429 >gi|158422035|ref|YP_001523327.1| outer membrane protein [Azorhizobium caulinodans ORS 571] gi|158328924|dbj|BAF86409.1| outer membrane protein [Azorhizobium caulinodans ORS 571] Length = 381 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +S++ PE+ L +I +L + + + + GHTD N +LS RA + Sbjct: 278 LFDFNSAVIKPESKATLDEIASLLRKAPDLKLVVVGHTDNV---GGMDSNMKLSQARAEA 334 Query: 295 AYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337 + L++ ++ R+ +GF +D + NRR++++ Sbjct: 335 VRRALVEQYAIAAARLQAWGAGFMAPVASNRTDEGRAKNRRVELV 379 >gi|83643665|ref|YP_432100.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83631708|gb|ABC27675.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 494 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 12/216 (5%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 F ++Q E +L R ++ L + + + L + +E + + Sbjct: 280 PFEKGSAQVKESINEALNRLQQEKLTLRHALTEAEVREVQSAASLETMKQEMEQKLLAVQ 339 Query: 191 RLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 D K+ + + + + R + I F SS + Sbjct: 340 LETDAVKRANEEIQRRFEFVQELFTLTEADVYRQNANVLIRAHGFK--FASGSSEVQRDN 397 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSE 306 + +L KI + + I I GHTD R N LS RA + + L G + Sbjct: 398 VTLLNKIIDAIEAFPNCKIRISGHTDN---RGDRALNQSLSEKRASNVAKFLANVGSIDS 454 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RI GF R +D +ANRR+++L+ + Sbjct: 455 SRIEA-EGFGASRPVANNDTKEGRAANRRVEVLIIN 489 >gi|192362185|ref|YP_001983947.1| OmpA domain-containing protein [Cellvibrio japonicus Ueda107] gi|190688350|gb|ACE86028.1| OmpA domain protein [Cellvibrio japonicus Ueda107] Length = 349 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 16/145 (11%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 D K +T+SGL D V+ E T ++I++ +FD + S P+ + ++ Sbjct: 203 DSKDKCPNTVSGLKVDADGCPVVLEKT---LVINL-----EILFDTAKSEVKPQYLPQVK 254 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISK 311 K+ + L V+++ GHTD+ A N RLS RA + L++ G++ DR++ Sbjct: 255 KLADALTQYENTVVTVEGHTDSQ---GSAAFNKRLSQQRADAVKAALVEKFGIAADRVTA 311 Query: 312 ISGFAHHRLKIASDP--MNSANRRI 334 + G+ R + + NRR+ Sbjct: 312 V-GYGLERPIANNATAEGRAQNRRV 335 >gi|284036695|ref|YP_003386625.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283815988|gb|ADB37826.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 658 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 7/109 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 + N F+ ++ L ++ + + + I GHTD + A N LS Sbjct: 550 ETLNNLFFESGRYDLAEKSRTELDRLSVFMQANPTVAVEISGHTDD---KGDAAANLALS 606 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 RA + L K+G+ RI + G+ R + + D NRRID Sbjct: 607 QKRAQAVVTYLTKAGIQPSRIKAV-GYGKARPLVPNTTDENRRLNRRID 654 >gi|99082288|ref|YP_614442.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99038568|gb|ABF65180.1| OmpA/MotB [Ruegeria sp. TM1040] Length = 221 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 17/211 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 S + N + G + + + + + + + + L Sbjct: 23 DPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKAETIIGTAAVGALAGGLIGRELD 82 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ +L + T +++S+ N F S+ L+ Sbjct: 83 KQEAELRQSLDN-------DSISIVNTGDRLIVSL---PNDLTFATDSAAISSVVRSDLR 132 Query: 254 KIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K+ L I + GHTD+ A N+ LS RA + + GVS R+ +I Sbjct: 133 KVAGSLQRYPGSIVQVIGHTDSD---GAASYNYSLSERRANAVADEIAAGGVSYGRM-RI 188 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 G + ++ + NRR++I++ + Sbjct: 189 IGRGEDQPVASNLTPEGKARNRRVEIVIIPQ 219 >gi|222086409|ref|YP_002544943.1| outer membrane lipoprotein [Agrobacterium radiobacter K84] gi|221723857|gb|ACM27013.1| outer membrane lipoprotein [Agrobacterium radiobacter K84] Length = 222 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I I++ + FD PE L + VL I + Sbjct: 91 LQGTGVSVTRVGDRI-ILNMPSAITFDIDRDEIKPEFFATLNSVAIVLRKF-NRTLIDVN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD++ + N LS RA S L G+ + R+S + GF + A++ Sbjct: 149 GHTDST---GSLQHNQDLSERRAGSVASYLGSQGIDQRRVSAV-GFGPTQPVASNANESG 204 Query: 328 NSANRRIDILV 338 + NRR++I + Sbjct: 205 RAQNRRVEIQI 215 >gi|254447788|ref|ZP_05061253.1| OmpA family protein [gamma proteobacterium HTCC5015] gi|198262568|gb|EDY86848.1| OmpA family protein [gamma proteobacterium HTCC5015] Length = 225 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 8/134 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268 ++ R G I++I F SS VL + VL + I ++ Sbjct: 92 EKLRDSGVSVERDGDNINLI-MPGNITFQTDSSDVSSSFYNVLDSVAIVLEEFDKTIVAV 150 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTD++ N LS RA S L GV +R + GF R + + Sbjct: 151 SGHTDST---GSDSYNQVLSEKRASSVASYLKSKGVLNERFE-VIGFGEARPIADNSTES 206 Query: 329 SA--NRRIDILVED 340 NRR++I + Sbjct: 207 GREQNRRVEITLLP 220 >gi|166710885|ref|ZP_02242092.1| outer membrane protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 365 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ I +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAISILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365 >gi|326799819|ref|YP_004317638.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326550583|gb|ADZ78968.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 434 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 12/280 (4%) Query: 63 KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 + + F + G+ + N N + + ++ N VD+ + Sbjct: 162 QELGSTTKAFIPAGLGFKFGVANGINIDLGYQVNLANTGTLDGLSTNKVDMFSYVHAGLE 221 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 F + + + K E L + +++ + L + Sbjct: 222 FALGDATKPFLGNRNPVVDMRKEYQASYDELAAALKAQKEENEALKAQLTTDLADDDGDG 281 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPM-FDKS 240 + K K+ + L A +V+ + ++D+ + FD S Sbjct: 282 VANKFDKCPGTAADAKVDGSGCPLPEAKKVVQQITVTEEDR----RVVDEAIKNLEFDLS 337 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P + L K+ +L + + GHTD + + N RLS +RA + L+ Sbjct: 338 KATIRPTSYPSLDKVARLLVEKNFSLKLAGHTDNT---GSMKLNMRLSKERAEAVKAYLV 394 Query: 301 KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 G + RI +G+ + A+ ANRR++ + Sbjct: 395 SKGANPSRIEA-TGYGPTQPIATNATAEGRQANRRVEFTL 433 >gi|311106926|ref|YP_003979779.1| OmpA family protein 3 [Achromobacter xylosoxidans A8] gi|310761615|gb|ADP17064.1| OmpA family protein 3 [Achromobacter xylosoxidans A8] Length = 199 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 18/150 (12%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +++ + GL A + G+ + + ++++ +FD + P L+ I Sbjct: 56 DLNAQIDGLAARH--DGLSVRQDKNAVTVAML---GDVLFDFDKTAIRPAAEPTLRDIAS 110 Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ S+ ++I GHTD+ + A N LSL RA + Q L GV + R++ + G Sbjct: 111 LIKASSAGTVAIEGHTDS---KGSASYNKDLSLRRAQAVAQWLTSHGVDKARLT-VKGLG 166 Query: 317 HHRLKI-------ASDP-MNSANRRIDILV 338 + A +P + NRR++ ++ Sbjct: 167 DTQPIQSNRLANGADNPQGRAQNRRVEFVL 196 >gi|300716419|ref|YP_003741222.1| type IV / VI secretion system family protein, DotU [Erwinia billingiae Eb661] gi|299062255|emb|CAX59372.1| Type IV / VI secretion system family protein, DotU [Erwinia billingiae Eb661] Length = 408 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 13/169 (7%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 + P E + + + DL ++ + + + + G + I + Sbjct: 234 WQTPLPKAEPVRRSNSTQAMLDLRTRLDDLI-------VDRTLDVADGANGSKVIIAADK 286 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDR 291 +F++ S P ++ ++ + + + + +TD P R N+ SL + Sbjct: 287 ---LFNRGGSDLTPAGRAIMVRVAAAMDNIKGTLQVSVYTDNQPQRTARFPSNYEYSLAQ 343 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 A++ +L + + + + G + +D + NRR++IL+ Sbjct: 344 AHTLTSLLQQLMIQPGHMIRGEGRGDSNPLLPNDSQENRAQNRRVEILL 392 >gi|114777177|ref|ZP_01452188.1| outer membrane protein [Mariprofundus ferrooxydans PV-1] gi|114552322|gb|EAU54805.1| outer membrane protein [Mariprofundus ferrooxydans PV-1] Length = 212 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P ++ L K L +T + + HTD+ N LS RA S Sbjct: 110 FDNDSAKLRPASVATLDKAVATLNRRATIKVEVAAHTDS---SGSDAYNLSLSERRAASV 166 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L+ G+ R++ G+ + ++ + NRR+++ V + Sbjct: 167 RDYLVAHGIDAARLTS-KGYGETQPIASNATKEGRAKNRRVELRVMN 212 >gi|300778373|ref|ZP_07088231.1| inorganic diphosphatase [Chryseobacterium gleum ATCC 35910] gi|300503883|gb|EFK35023.1| inorganic diphosphatase [Chryseobacterium gleum ATCC 35910] Length = 909 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS P + L + E+L I + G+TD N LS RA +A Sbjct: 805 FETGSSDLKPGYELQLNTLAEILNAYPNLKIKLGGYTDN---SGNEESNLSLSNLRAQTA 861 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK---IASDPMNSANRRIDILVE 339 L++ GVS DRI G+ +D + NRRID+ V Sbjct: 862 KLKLLELGVSADRIEA-EGYGSQHPVCEANDTDECKAKNRRIDVRVL 907 >gi|148252339|ref|YP_001236924.1| OmpA domain-containing protein [Bradyrhizobium sp. BTAi1] gi|146404512|gb|ABQ33018.1| putative outer membrane protein with ompA domain [Bradyrhizobium sp. BTAi1] Length = 464 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S ++ +L ++ E+ + I GHTDA A N LS RA + Sbjct: 363 FETGRSDLDRDSTGLLDRLVEIAMRCPAANVEIAGHTDAE---GDAAANQALSEKRAQAV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+K+G+ +R + + G+ + ++D + NRRI+ LV Sbjct: 420 VDYLVKAGLPAERFTAV-GYGSAQPVASNDTGDGRAQNRRIEFLV 463 >gi|332996878|gb|EGK16497.1| inner membrane lipoprotein yiaD [Shigella flexneri K-272] gi|333013437|gb|EGK32809.1| inner membrane lipoprotein yiaD [Shigella flexneri K-227] Length = 219 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|325918947|ref|ZP_08181016.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas vesicatoria ATCC 35937] gi|325534834|gb|EGD06761.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas vesicatoria ATCC 35937] Length = 365 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAQSILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGESRPIAPNANPDGSDNPEGRAKNRRTELNVQN 365 >gi|254719262|ref|ZP_05181073.1| OmpA family protein [Brucella sp. 83/13] gi|265984261|ref|ZP_06096996.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13] gi|306838013|ref|ZP_07470871.1| OmpA family protein [Brucella sp. NF 2653] gi|264662853|gb|EEZ33114.1| OmpA/MotB domain-containing protein [Brucella sp. 83/13] gi|306406937|gb|EFM63158.1| OmpA family protein [Brucella sp. NF 2653] Length = 220 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 +G TR G I I++ + FD + L + VL + + + G Sbjct: 90 SQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + ++ Sbjct: 149 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 204 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 205 AQNRRVEIQISPLRG 219 >gi|108763188|ref|YP_632960.1| OmpA domain-containing protein [Myxococcus xanthus DK 1622] gi|108467068|gb|ABF92253.1| OmpA domain protein [Myxococcus xanthus DK 1622] Length = 615 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 13/131 (9%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273 L E +++ F+ + + + +L + V+ E+ + + HTD Sbjct: 485 LVEIRPDRLVV-----MGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTD 539 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 R DN RLS RA + Q L+ ++ +R+ + G+ R ++ N N Sbjct: 540 D---RGFPDDNRRLSQGRAEAVRQYLIGRDIAPERLKAL-GYGQERPIDSNATSNGRENN 595 Query: 332 RRIDILVEDRQ 342 RR++ L+ D Q Sbjct: 596 RRVEFLLADPQ 606 >gi|218960421|ref|YP_001740196.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167729078|emb|CAO79989.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 781 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 11/127 (8%) Query: 220 TRTGILISIIDQRN-----TPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTD 273 R + + +D FD S++ E+ +L +I +L + T + I GHT Sbjct: 656 VRQDLRLEPLDLDKVFVFSNIQFDYDSAVLKAESYPILNEIALTLLNNPTIRVEISGHTC 715 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331 + + N LS +RA + L GV+ +R+ + G+ R + + + N Sbjct: 716 ENQ--GGEKYNTTLSENRAAAVLSYLKGKGVNANRMISV-GYGLSRPLNNNLSEEDKALN 772 Query: 332 RRIDILV 338 RR+++ + Sbjct: 773 RRVEVKI 779 >gi|262279684|ref|ZP_06057469.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202] gi|262260035|gb|EEY78768.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202] Length = 473 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A Q ++ +S++ + L A + Sbjct: 295 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPVTAEQSVSNSLSASQTALTAID-PN 353 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + +++ GHT Sbjct: 354 NVDVNALVKALNLQIIN------FASGSSEIPADNKAILDQAVTLLNKVSGVKLNVGGHT 407 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D++ A N LS RA + L GV ++ G + +D Sbjct: 408 DST---GNAASNKALSQRRAQAVVDYLTSKGVDASKLVA-QGHGSDQPVAENTTDEGRFK 463 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 464 NRRIEFSV 471 >gi|311108875|ref|YP_003981728.1| OmpA family protein 4 [Achromobacter xylosoxidans A8] gi|310763564|gb|ADP19013.1| OmpA family protein 4 [Achromobacter xylosoxidans A8] Length = 264 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 8/154 (5%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++ + Q +A +++L+ V G+L ++ R F+ S+ Sbjct: 111 EVQNEASRQQIASAFATSLNPTYKIVNGLRVSASKDEQGLLDQVLTNRVVE-FETGSATL 169 Query: 245 LPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +L K+ +V+ ++ + I GHTD+ N LS RA + L+ G Sbjct: 170 TTRGRELLDKVADVVPKLHSDKVQIIGHTDS---SGSRSTNLALSQARADAVKTYLVDKG 226 Query: 304 VSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 + R + G + A+ + NRRI+ Sbjct: 227 LPPARFETL-GAGPDQPLATNATAEGRAKNRRIE 259 >gi|223039024|ref|ZP_03609315.1| outer membrane fibronectin-binding protein [Campylobacter rectus RM3267] gi|222879663|gb|EEF14753.1| outer membrane fibronectin-binding protein [Campylobacter rectus RM3267] Length = 293 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 N GV+ + T +I + D FD S P+ + ++K+ + + I + Sbjct: 166 NTPAGVVVDETGCEKVIFLRDLDVNFAFD--SYKITPKYLEEIKKVAMFMGENPGYRIVL 223 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD+ N +LS RA + + L + GVS D+I+ I G+ + + Sbjct: 224 SGHTDSV---GTEAYNQKLSEKRANAVAKALEELGVSADKITAI-GYGELKPIATNKTKE 279 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 280 GRAENRRVE 288 >gi|77918162|ref|YP_355977.1| hypothetical protein Pcar_0547 [Pelobacter carbinolicus DSM 2380] gi|77544245|gb|ABA87807.1| conserved OmpA/MotB domain protein [Pelobacter carbinolicus DSM 2380] Length = 420 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD ++ PE L K + + V I + GHTD+ + N RLS RA + Sbjct: 312 FDFDQAVIKPEFKGELDKAAAFVRANANVPFILLAGHTDS---KGRDTYNQRLSEKRAEA 368 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 Q L+ + G+ ++ G+ + +D NRR++++ Sbjct: 369 VRQALIDNYGLDAAKLKS-RGYGEAQPVATNDTEEGRYLNRRVELI 413 >gi|330993342|ref|ZP_08317277.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] gi|329759372|gb|EGG75881.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] Length = 364 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + + ++ + + H T I + G+TD A P + N LS+ R Sbjct: 256 FFDWDGAALTGRSREIVAEAAQASTHVQTTRIEVNGYTDNTAAHPGPRGQQYNLGLSMRR 315 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV + I I G+ + + D NRR++I++ Sbjct: 316 AESVKAELIRDGVPANAID-IHGYGEAHPLVPTGPDTREPQNRRVEIIL 363 >gi|74314194|ref|YP_312613.1| putative outer membrane lipoprotein [Shigella sonnei Ss046] gi|73857671|gb|AAZ90378.1| putative outer membrane protein [Shigella sonnei Ss046] gi|323166955|gb|EFZ52694.1| inner membrane lipoprotein yiaD [Shigella sonnei 53G] Length = 219 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLTEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|302381938|ref|YP_003817761.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192566|gb|ADL00138.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 356 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 13/207 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 N S +++ + L + ++ + + P++ + L Sbjct: 135 NESGSGDNRSTSNPRFQAMLPLDGAFGGGTALGASQMSGMRPVAVSTLRTSAGTGSLAGG 194 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A +S+L+ + A + + T G ++++ FD + P+ L ++ Sbjct: 195 AGVATSSLATVQA--LKSDLGAIETDRGTVVALS---GDVTFDFDQATIRPDARPTLDRL 249 Query: 256 GEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 E++ + T I+I GHTD+ N LS RA + L+ G S DR+ + Sbjct: 250 AELIQATGGTGRIAIEGHTDSE---GTDAYNHDLSERRAEAVKAYLVPRGTSGDRLEAM- 305 Query: 314 GFAHHRLKIAS--DPMNSANRRIDILV 338 G R +A+ D NRR+++++ Sbjct: 306 GIGEARPAVANDDDAGRRRNRRVEVIL 332 >gi|260778449|ref|ZP_05887341.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604613|gb|EEX30908.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] Length = 222 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 16/213 (7%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C+ + +++ G+ S + + + + ++ + Sbjct: 15 SGCQATQRQNATTGESETNSVTKGALLGALAGAAVGLATGDDATERRQHALIGAAGGAAV 74 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--------FDKSSSIPLPETIVVL 252 G D + E +G+ + + N M F S P L Sbjct: 75 GGGVGYYFDQQEAALRKELLDSGVQVERV-GENQLMLRMENGIGFQTGSYNLDPSIHNTL 133 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + ++L + + I GHTD++ N LS RA S L+ GV+ R Sbjct: 134 RGVAKILVEYPDTSLVIEGHTDST---GSDTTNQVLSERRAESVRSYLISQGVASGRAIA 190 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G ++ + NRR++I + + Sbjct: 191 -RGNGERFPLCTNNTSEGRACNRRVEIKILPLK 222 >gi|107100485|ref|ZP_01364403.1| hypothetical protein PaerPA_01001510 [Pseudomonas aeruginosa PACS2] Length = 188 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F SS L I E L ++ +SI GHTD+ N +LS RA + Sbjct: 83 FAFDSSKVDAADSEKLNGIAERLKGEAASTRLSITGHTDSV---GSDAYNQKLSERRANA 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L+ +GV I + G + + + NRR++IL++ Sbjct: 140 VANYLIDAGVPSSIIVGVQGLGESQPVADNKTREGRAENRRVEILIKR 187 >gi|254475762|ref|ZP_05089148.1| OmpA/MotB [Ruegeria sp. R11] gi|214030005|gb|EEB70840.1| OmpA/MotB [Ruegeria sp. R11] Length = 219 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 17/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L +++ ++S G+ T +++S+ N F SS P Sbjct: 78 NQLDAQERELRQSISN-------DGITIVNTGDRLIVSL---PNDLTFATDSSAISPAVR 127 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ L + + GHTD+ A N LS RA + + GV +R Sbjct: 128 SDLNKVAASLVRYPNSLVQVIGHTDSD---GSASYNQALSERRANAVADQIQAGGVPYNR 184 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 + I G + ++ + NRR++I+V + Sbjct: 185 L-AIIGRGEDQPVASNLTPEGKARNRRVEIVVIPQ 218 >gi|170720329|ref|YP_001748017.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169758332|gb|ACA71648.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 237 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +IS+ D + MF S+ + LQ + L I + GHTD Sbjct: 125 VISL-DDQGQVMFAFDSADLTAGSQQRLQSLLPRLNELGVSRIKVVGHTDNV---GSDSY 180 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 N LS RA S Q L+ G++ +++ G +D + NRR+D+ + Sbjct: 181 NQALSERRAASVAQYLISQGLAPQKVTS-EGRGASEPVAENDTEQGRAQNRRVDLHL 236 >gi|126666899|ref|ZP_01737875.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] gi|126628615|gb|EAZ99236.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] Length = 232 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 8/140 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + ++G R G IS++ FD + + + L+ + VL Sbjct: 96 QEVQLRQQLEGTGVRVVRNGDEISLV-MPGNITFDLNQTSIRSQFAGTLESVALVLKEFD 154 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + +I I GHTD+ N LS RA S L+ G+ E R ++ G+ Sbjct: 155 QTIIQIEGHTDSQ---GGDSYNQLLSERRASSVRDFLLNQGI-ESRRTRAVGYGERYPVA 210 Query: 323 ASDPMNSA--NRRIDILVED 340 ++D NRR+++ + Sbjct: 211 SNDTSGGREQNRRVELTLVP 230 >gi|17987069|ref|NP_539703.1| outer membrane protein [Brucella melitensis bv. 1 str. 16M] gi|261222366|ref|ZP_05936647.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94] gi|261325291|ref|ZP_05964488.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33] gi|265988867|ref|ZP_06101424.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265991281|ref|ZP_06103838.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995118|ref|ZP_06107675.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265998331|ref|ZP_06110888.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1] gi|265999432|ref|ZP_05466341.2| bacterial outer membrane protein [Brucella melitensis bv. 2 str. 63/9] gi|17982726|gb|AAL51967.1| outer membrane protein [Brucella melitensis bv. 1 str. 16M] gi|260920950|gb|EEX87603.1| OmpA/MotB domain-containing protein [Brucella ceti B1/94] gi|261301271|gb|EEY04768.1| OmpA/MotB domain-containing protein [Brucella neotomae 5K33] gi|262552799|gb|EEZ08789.1| OmpA/MotB domain-containing protein [Brucella ceti M490/95/1] gi|262766231|gb|EEZ12020.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002065|gb|EEZ14640.1| OmpA/MotB domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093937|gb|EEZ17871.1| bacterial outer membrane protein [Brucella melitensis bv. 2 str. 63/9] gi|264661064|gb|EEZ31325.1| OmpA/MotB domain-containing protein [Brucella pinnipedialis M292/94/1] gi|326409224|gb|ADZ66289.1| OmpA/MotB domain-containing protein [Brucella melitensis M28] gi|326538933|gb|ADZ87148.1| OmpA/MotB domain protein [Brucella melitensis M5-90] Length = 232 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD + L + VL + + + G Sbjct: 102 LQGTGVSVTRNGDRI-ILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYG 160 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD++ A N LS RA S L G+ R + G+ + ++ Sbjct: 161 FTDST---GSASYNQALSQRRAASVASYLDSQGIDPRRF-AVIGYGASQPIASNATPEGR 216 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + +G Sbjct: 217 AQNRRVEIQISPLRG 231 >gi|83944251|ref|ZP_00956706.1| OmpA family protein [Sulfitobacter sp. EE-36] gi|83953292|ref|ZP_00962014.1| OmpA family protein [Sulfitobacter sp. NAS-14.1] gi|83842260|gb|EAP81428.1| OmpA family protein [Sulfitobacter sp. NAS-14.1] gi|83844795|gb|EAP82677.1| OmpA family protein [Sulfitobacter sp. EE-36] Length = 222 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 22/217 (10%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 I N + +L S + + Sbjct: 22 EPGPIGGNPNDPNANTRNGALIGAGTGAVIGALSKGDGNRAQGALAGAVAGGALGAGYGY 81 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K+ DL +++ S V+ T +++++ +F S+ Sbjct: 82 SLDKQEADLRRQLDS------------DVIITNTGDRLIVTL---PQDILFATDSTQVQA 126 Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 L + + + + I GHTD+ A N +LS RA + VL+ +GV Sbjct: 127 GMQNDLAALARNVNVYSNSTLQIVGHTDSD---GEASYNQQLSEGRARAVANVLVSNGVP 183 Query: 306 EDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 RI + G + + + + NRR++I++ Sbjct: 184 GSRIQSV-GRGESQPVASNLNAAGKAQNRRVEIVILP 219 >gi|224370810|ref|YP_002604974.1| OmpF [Desulfobacterium autotrophicum HRM2] gi|223693527|gb|ACN16810.1| OmpF [Desulfobacterium autotrophicum HRM2] Length = 213 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD SS P L ++ +VL + I + GHTD+ + + N LS RA + Sbjct: 112 FFDFDSSTLKPGAYSELDRVAKVLRDFPQTRIRVEGHTDS---KGTDQYNMLLSQRRAQA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 L++ GV R+ I GF + ++D NRR++I++ Q Sbjct: 169 VTDALVQRGVDPMRMESI-GFGESQPVSSNDGD---NRRVNIVIIPVQ 212 >gi|238020688|ref|ZP_04601114.1| hypothetical protein GCWU000324_00578 [Kingella oralis ATCC 51147] gi|237867668|gb|EEP68674.1| hypothetical protein GCWU000324_00578 [Kingella oralis ATCC 51147] Length = 224 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 ++G R G I + F +S+ + L + + LA T+ I+I Sbjct: 86 EQLQGSGVAVDRQGDQIKLT-MPAAVTFATNSATLSAQAQNSLSQAAQTLATYTDTTITI 144 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 GHTD + N A +N LS +RA S L + GV+ +R+ +SG + +++ Sbjct: 145 VGHTDNT--GNDAINN-PLSYNRAQSVANYLNQHGVAANRM-SVSGQGSRQPVADNSTEA 200 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 201 GRAQNRRVEILINPDQ 216 >gi|284039490|ref|YP_003389420.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283818783|gb|ADB40621.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 361 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++SS I +PE+ L+K+ + + I + GHTD R N LS +RA Sbjct: 260 FEQSSYILVPESSAELEKLVRAMKENPLRSIDVSGHTDNV---GDPRLNLALSENRAKVV 316 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L + G+++DRI+ I G+ R ++ + NRR++I + Sbjct: 317 ASYLKRRGIADDRITTI-GYGGTRPIGNNNTEGERAKNRRVEITI 360 >gi|167588752|ref|ZP_02381140.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu] Length = 224 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIA 281 + ++ +F + P L + LA +S+ G+TD+ Sbjct: 111 VEHVNLAGDALFATGLATLTPTARASLDAL---LARQGNTAFTRVSVTGYTDSV---GGD 164 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N LS RA + L G++ R ++G ++ ++NRR++I +E Sbjct: 165 ASNLALSQRRAQAVAGYLKSHGLNA-RTVAVTGRGSADPVASNATAEGRASNRRVEISLE 223 Query: 340 D 340 Sbjct: 224 R 224 >gi|116327025|ref|YP_796745.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332316|ref|YP_802034.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119769|gb|ABJ77812.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126005|gb|ABJ77276.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 667 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 18/153 (11%) Query: 199 ISSTLSGLVADNIVKGVLF-----ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 +S L+ N + V G I I N F+ S +PE+ L Sbjct: 524 VSQNLNLNSKKNFSEKVEVLLQLPRIEERG-TIQI----NNLFFESKSFRIIPESEPELN 578 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISK 311 ++ E++ + + I I GHTD +DN LS RA + + L K + +RI K Sbjct: 579 RLAEIMKENPDIKIQIEGHTDNV---GKKKDNLLLSEKRAIAIAEYLSQKHSIPTERI-K 634 Query: 312 ISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 GF + +D NRR++ + + Sbjct: 635 TRGFGDNFPLSKNDSEEGRRKNRRVNFTILKSK 667 >gi|327481279|gb|AEA84589.1| ompA family protein [Pseudomonas stutzeri DSM 4166] Length = 265 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 73/178 (41%), Gaps = 11/178 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + + E + R +R+ A+ +++ G ++ + + T Sbjct: 84 SEIAAQQGELLQHQEQVARLEMERDRLRRMLQDAQLMTAEQQGRWLEDQMMSLAASETDR 143 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G+++++ D +F S+ L K+ L + + + I G++D+ R Sbjct: 144 GLVMTLGD----VLFHPDSAELGNSANRTLLKLVHFLQLNPQRKVRIEGYSDS---RGDP 196 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 + N LS RA + +L+ G+ +R+ + G+ AS + NRR++IL Sbjct: 197 QANLELSRARAQTVADLLISLGIEAERVE-VRGYGERFPIAENASARGRAQNRRVEIL 253 >gi|124003367|ref|ZP_01688217.1| outer membrane protein [Microscilla marina ATCC 23134] gi|123991465|gb|EAY30896.1| outer membrane protein [Microscilla marina ATCC 23134] Length = 116 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLD 290 N F+ + ++ V L + + L + IS I GHTD + AR N LS Sbjct: 6 NNVFFEYNKYALKDKSKVELDNLVKFLKENP-EISGEISGHTDN--IGDKAR-NRELSQQ 61 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 RA S L+ GV R+ G+ + +D + NRRI+ + Sbjct: 62 RANSVRDYLVSHGVDASRLV-YKGYGDSKPAATNDTEEGRAKNRRIEFKIL 111 >gi|71066360|ref|YP_265087.1| OmpA/OmpF family outer membrane protein [Psychrobacter arcticus 273-4] gi|71039345|gb|AAZ19653.1| outer membrane protein, OmpA/OmpF family [Psychrobacter arcticus 273-4] Length = 217 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ AK++ ++G GV G I ++ + F + Sbjct: 74 MERQAKQLEQQMAGT-------GVTVTPNANG-NIDLV-MPGSITFSFDDATLNNSFKPT 124 Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + + I+I GHTD+ + N +LS DRAY+ L GV+ +RI+ Sbjct: 125 LDKLAATMNEYNQNTITIAGHTDS---KGTDAYNMKLSRDRAYAVANYLSARGVASNRIN 181 Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + + R ++ NRR+++ V Q Sbjct: 182 -VVAYGESRPVADNNSEYGRQQNRRVELTVNAPQ 214 >gi|330504866|ref|YP_004381735.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328919152|gb|AEB59983.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 222 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G +I +I F S+ L + + I + G Sbjct: 91 MQGTGVEVQRQGDVIQLI-MPGNITFATDSAQIASSFYQPLNNLANSFRQYNQNSIEVVG 149 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ N LS RA S L+ G+ R+ G + ++ Sbjct: 150 HTDST---GSHSHNMALSQRRAQSVADYLLAQGIDPSRV-STRGMGPDQPVASNATADGR 205 Query: 329 SANRRIDILVEDRQG 343 + NRR+++ + G Sbjct: 206 AQNRRVEVTLRPLPG 220 >gi|296282332|ref|ZP_06860330.1| putative outer membrane lipoprotein [Citromicrobium bathyomarinum JL354] Length = 238 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++SS+ +P + +L ++ + I +I GHTD + N LS DRA Sbjct: 123 FEESSAEFIPGSEELLDELATAMRPCVGAIVAISGHTDT---SGSPKVNLALSQDRAQMV 179 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L++ G+ + +GF R P + ANRRI+ Sbjct: 180 RRELIERGIPGQNLIA-NGFGSSRPVEGLSPADPANRRIE 218 >gi|327403673|ref|YP_004344511.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319181|gb|AEA43673.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 223 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S P + L + E++ E I I GHTD+ + N +LS RA S Sbjct: 122 FETGKSDLKPISYGALNNLVEIMKRKKEIKIQIDGHTDSD---GDNQANQQLSQKRAESV 178 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L+ G+ R+ G + ++ + NRR +I + Sbjct: 179 RNYLISKGIDATRVKA-KGNGESKPIADNNTAQGKAQNRRTEITIL 223 >gi|86141022|ref|ZP_01059581.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] gi|85832964|gb|EAQ51413.1| putative flagellar motor protein MotB [Leeuwenhoekiella blandensis MED217] Length = 268 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 82/202 (40%), Gaps = 13/202 (6%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--EHCKNSLTRDSEKGKDLCKSTD 162 + K + +++Y + N+ L +S + + +L +S++ ++L D Sbjct: 61 QLEKELAQATSERDDLQRKYATAQANLKNLQDSYDALEANSSKALAENSKQNRELLAQLD 120 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 +++ E L + ++ +R + L+ + + + L + + L + Sbjct: 121 EKQADLAAEQNRLEKMQRDLTERSRRVEELESMIAAKDAKMRAL--KDAISKALVDFEGN 178 Query: 223 GILISIID------QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 G+ + D N +F+ S + + ++G VLA + E+ + I GHTD Sbjct: 179 GLTVEQRDGKVYVSLENKLLFESGSWNVGAKGRQAVNQLGSVLAQNPEIAVLIEGHTDDV 238 Query: 276 PFRNIAR--DNWRLSLDRAYSA 295 P+ DNW LS RA + Sbjct: 239 PYGGNGPLKDNWDLSTKRATAI 260 >gi|28868712|ref|NP_791331.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213969090|ref|ZP_03397229.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|301384017|ref|ZP_07232435.1| ompA family protein [Pseudomonas syringae pv. tomato Max13] gi|302058723|ref|ZP_07250264.1| ompA family protein [Pseudomonas syringae pv. tomato K40] gi|302131685|ref|ZP_07257675.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851951|gb|AAO55026.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213926088|gb|EEB59644.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|331016335|gb|EGH96391.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 260 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 89/237 (37%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N E+ ++ + + D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPESTKVAALETKDASEWLAKAEQAFRNDDDVKKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L +T+ + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAAFLQENTDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + +S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNSSNSGRAMNRRVEVTISN 248 >gi|332995852|gb|AEF05907.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Alteromonas sp. SN2] Length = 202 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDAS 275 + R G + +I F SS P VLQ + +V+ + + + I+GHTD + Sbjct: 77 VQVVREGDNLRLI-MPGDITFATDSSSISPNFNPVLQDVAKVVNNYEKTVLMIKGHTDDT 135 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 + N LS RA + VL+ V+ RI+ + G ++ K+ +D + NRR Sbjct: 136 ---GSEQYNQGLSERRAGAVRNVLLNYSVNSTRITTV-GMGEYQPKVPNDTAANRSMNRR 191 Query: 334 IDILVED 340 +++ ++ Sbjct: 192 VELEIQP 198 >gi|331684442|ref|ZP_08385034.1| putative OmpA-family membrane protein [Escherichia coli H299] gi|331078057|gb|EGI49263.1| putative OmpA-family membrane protein [Escherichia coli H299] Length = 550 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + +FD + T V++ + Sbjct: 399 ERIRQPVLRTIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|253698707|ref|YP_003019896.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251773557|gb|ACT16138.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 333 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ L+ + + L +I GHTD+ N +LS RA S Sbjct: 229 FDTNKSDIKPQYHDELKALADFLKEFPNASGTIEGHTDSV---GDKAANMKLSQRRADSV 285 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 + L+ GV+ +R+ + GF + + NRRI+ Sbjct: 286 RKYLVDRFGVAPERVKAV-GFGPTKPAADNKTAAGKQKNRRIE 327 >gi|162452747|ref|YP_001615114.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161163329|emb|CAN94634.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 386 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ PE+ +L + +VL + + I I+GHTD + A N +LS RA S Sbjct: 281 FEFDKDKIRPESFPILDAVVDVLQQNPKIKIEIQGHTDN---KGAAAYNKKLSDRRAASV 337 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 + L+ G+ E R++ G+ + + + D + NRR+ + Sbjct: 338 KKYLVAKGIDEARLTS-KGYGMEQPIVPNTSDQNRALNRRVQFV 380 >gi|300955043|ref|ZP_07167452.1| OmpA family protein [Escherichia coli MS 175-1] gi|300318040|gb|EFJ67824.1| OmpA family protein [Escherichia coli MS 175-1] Length = 215 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDI 336 ++ + NRR++I Sbjct: 198 ASNSTAEGKAQNRRVEI 214 >gi|298528936|ref|ZP_07016339.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510372|gb|EFI34275.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 223 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 14/167 (8%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMF 237 + + +LQ L + LS A V + T G +LIS+ F Sbjct: 65 WNQAVQNQSSSLQLQGLYTQAREKLSTPGAP-----VSVKMTEQGSVLISLF---GEVFF 116 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-PFRNIARDNWRLSLDRAYSAY 296 S+ PE+ LQ+I E+++ + + + G TD+ R + +S RA Sbjct: 117 SPGSADLNPESNKYLQQIAEIVSLAQGQVKVAGFTDSRENSVQGDRSIFEISAMRAARIG 176 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + L +S G+ ++ + I G R ++ + + NRR++I + D Sbjct: 177 EELTRSRGLRQENLV-IQGHGTPRPQVPENSPVGSEMNRRVEIRIVD 222 >gi|86135195|ref|ZP_01053777.1| OmpA family protein [Polaribacter sp. MED152] gi|85822058|gb|EAQ43205.1| OmpA family protein [Polaribacter sp. MED152] Length = 452 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 7/113 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + +F+ + L I +V+A + SI GHTD+ + N RLS Sbjct: 343 TAKSILFNSGRATFKAGVTKQLDAIVDVMAKYPKATFSIGGHTDS---SGSSSLNLRLSE 399 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA + L+K+GV R+ I G+ + + NRR++I V + Sbjct: 400 KRAIAVRDYLVKNGVETTRLEAI-GYGEGFPIDTNKTRAGRANNRRVEIKVTN 451 >gi|332977451|gb|EGK14226.1| outer membrane protein [Psychrobacter sp. 1501(2011)] Length = 383 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 10/132 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV- 265 N V+ + T + + I D+ FD S+ + + K+ E + Sbjct: 234 NTPANVVVDETGCPVQVQIDDELKMELRVFFDNDKSVIKEQYKPEIAKVAEKMREYPNSS 293 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324 SI GH AS AR N RLS RA + +L GV+ +R+S + G+ + R + Sbjct: 294 ASIEGH--ASKTGPSARYNQRLSEARAIAVKTMLTNEFGVAPNRLSTV-GYGYDRPIAPN 350 Query: 325 DPM--NSANRRI 334 D + NRR+ Sbjct: 351 DTEEGRAMNRRV 362 >gi|259417844|ref|ZP_05741763.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259346750|gb|EEW58564.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 221 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 17/211 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 S + N + G + S + + + + + + L Sbjct: 23 DPASYGAPGGINRSQNGAIIGGLIGAGIGAATSDDDKAETIIGTAAVGALAGGLIGRELD 82 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ +L + T +++S+ N F SS L+ Sbjct: 83 KQEAELRQSLDN-------DSISIVNTGDRLIVSL---PNDLTFATDSSAISSVVRSDLR 132 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K+ L V+ + GHTD+ A N+ LS RA + + GVS +R+ +I Sbjct: 133 KVAGSLQRYPGSVVQVIGHTDSD---GAASYNYSLSERRANAVADEIAAGGVSYNRM-RI 188 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 G + ++ + NRR++I++ + Sbjct: 189 IGRGEDQPVASNLTAEGKARNRRVEIVIIPQ 219 >gi|327404889|ref|YP_004345727.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320397|gb|AEA44889.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 688 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + + PE+ ++++ +++ I I GHTD + A N LS RA + Sbjct: 584 FFDVNKATLRPESNAEMERLVQLMKDVPRLKIEISGHTDNT---GSATLNETLSQQRAEA 640 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L+ G++ +R+ G+ + +++ + NRR + ++ Sbjct: 641 VVAYLVSKGIAANRMIA-KGYGSSQPIASNNSEDGKQQNRRTEFEIK 686 >gi|292491797|ref|YP_003527236.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] gi|291580392|gb|ADE14849.1| OmpA/MotB domain protein [Nitrosococcus halophilus Nc4] Length = 202 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S L ET L ++G +L E I I GHTDA + +NW LS +RA Sbjct: 95 FALNSFEILDETRPYLDEVGRLLNMEQFKEERIIIEGHTDAQ--GSENYNNW-LSQERAK 151 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 S L+ S V +R+ + G +P N NRR+++ Sbjct: 152 SVKNYLVSSFRVDPERLM-VVGRGEREPLPDLNPNNGLNRRVEL 194 >gi|317064862|ref|ZP_07929347.1| outer membrane protein [Fusobacterium ulcerans ATCC 49185] gi|313690538|gb|EFS27373.1| outer membrane protein [Fusobacterium ulcerans ATCC 49185] Length = 211 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + ++ G +++ F SS + L I VL E I + G Sbjct: 82 LKNTEVQVSQNGDNLNLN-LPGGVTFATDSSNIVSSFYGPLNSIATVLVQYPETRIIVNG 140 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329 +TD + + + LS RA S L++ GVS RIS + G + R ++ + Sbjct: 141 YTDN--VGSASYNV-SLSERRAASVRNYLIQQGVSARRISYVGYGMENPRATNSTAAGRA 197 Query: 330 ANRRIDILVED 340 NRR+++ + Sbjct: 198 ENRRVELEILP 208 >gi|310817591|ref|YP_003949949.1| outer membrane protein [Stigmatella aurantiaca DW4/3-1] gi|309390663|gb|ADO68122.1| outer membrane protein [Stigmatella aurantiaca DW4/3-1] Length = 632 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 82/271 (30%), Gaps = 11/271 (4%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + D+ ++ + D ++S D + + + Sbjct: 357 PLKDEDKDGVEDVADKCPQTPGAASAQGCPDQDGDGIQDSEDKCPAAAGNAAGQGCPDKD 416 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + ++ + + + + N P K Sbjct: 417 GDGIDDASDRCPAEAGPAERQGCPIKDADNDGVLDEQDSCPNEAGLPELKGCPAKDADND 476 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L D + + I I + FD ++S + Sbjct: 477 TLADHLDNCPNEAGPVDNQGCPAKQKQLVAIRQDRIEI---KEAVYFDSNASTIQARSNG 533 Query: 251 VLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L ++ ++L E++S I GHTD R A N LS RA + L+K GV+ +R Sbjct: 534 LLDQMAKLLNEHPEIVSVLIEGHTDD---RGAADYNRTLSKQRADTVRDYLVKKGVAAER 590 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + G+ R + NRR+D L Sbjct: 591 LE-TQGYGPDRPVQPNTTAAGRTANRRVDFL 620 >gi|299768758|ref|YP_003730784.1| Outer membrane protein A precursor [Acinetobacter sp. DR1] gi|298698846|gb|ADI89411.1| Outer membrane protein A precursor [Acinetobacter sp. DR1] Length = 159 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 ++K F T G + + +FD +++ L ++ L + I Sbjct: 33 KLLKKEGFVLTDEGWTLGL---PERLLFDFNNAELKQSHEAELVRLANQLNKYDLNKLKI 89 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD A N +LS +RA S + + G ++ I + G + + + + Sbjct: 90 VGHTDDV---GDAAYNQKLSEERAQSVANLFLARGFKKENIY-VIGRGSTQPYVPNTTNE 145 Query: 327 MNSANRRIDILVED 340 + NRR+ I+V Sbjct: 146 NRAINRRVAIVVIP 159 >gi|261341826|ref|ZP_05969684.1| hypothetical protein ENTCAN_08313 [Enterobacter cancerogenus ATCC 35316] gi|288316202|gb|EFC55140.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 ++ +++ G+TD++ N RLS RA S L+ GV+ +RI + SG Sbjct: 142 SKTAVNVIGYTDST---GSQDLNMRLSQQRADSVASALITQGVAANRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220 >gi|320182433|gb|EFW57330.1| Putative outer membrane lipoprotein [Shigella boydii ATCC 9905] Length = 550 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 + I + + D E T + + + + +FD + T V++ + Sbjct: 399 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVEISLVPR 542 >gi|330872771|gb|EGH06920.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964108|gb|EGH64368.1| ompA family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 260 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 11/237 (4%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 TK + +L+ +N E+ ++ + + D+ K L Sbjct: 21 ATKPNPNLEQARSNFTALQTNPESTKVAALETKDASEWLAKAEQAFRNDDDVKKVDQLSY 80 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 N+ ++ A + ++ + + + A + + + T G L Sbjct: 81 LTNQRVELAKQTIALRTSEAALQNASADRAKARLEARDAQIAA--LKNSLNAKQTERGTL 138 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 ++ D +FD + + P + K+ L +T+ + + G+TD++ A N Sbjct: 139 VTFGD----VLFDYNKAELKPTAQGDIGKLAAFLQENTDRKVIVEGYTDST---GSASYN 191 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S L++ GV R+ + G + S+ + NRR+++ + + Sbjct: 192 QSLSERRANSVRMALVRMGVDPARVVTMGYGKEYPVADNTSNSGRAMNRRVEVTISN 248 >gi|218778169|ref|YP_002429487.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759553|gb|ACL02019.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] Length = 381 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + + ++ K VL + + I GHTD+ R + N LS DRA + Sbjct: 277 FKTNKADIAKKYYPIMDKAICVLKKYPDLKVLIGGHTDS---RGPDKFNQELSQDRAQAV 333 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 ++K GV+ +R+ + GF + A+D + NRR+ + Sbjct: 334 MDYMVKKGVAPERL-SVRGFGAAKPIAANDSKEGRAQNRRVTL 375 >gi|254524607|ref|ZP_05136662.1| hypothetical protein SSKA14_3746 [Stenotrophomonas sp. SKA14] gi|219722198|gb|EED40723.1| hypothetical protein SSKA14_3746 [Stenotrophomonas sp. SKA14] Length = 250 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 15/165 (9%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 ++ E R++ DL+ ++S S V + + G + II+ F Sbjct: 98 ITGEVGNEALRQQVASDLS--LASNTSYTVTNALKVGSQQNVLDQTLANRIIE------F 149 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 S+ P + +L ++ +A + I GHTD N LS RA + Sbjct: 150 QSGSARLTPFGMSILDEMVAKMAQMPDSRFLIIGHTDNV---GQRESNLTLSHARALAVK 206 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 +M G+ + + G + + + NRRI+ ++ Sbjct: 207 NYMMSKGIPGSHMD-VLGKGPDEPVADNTSNDGRARNRRIEFKIQ 250 >gi|218961893|ref|YP_001741668.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730550|emb|CAO81462.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 911 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + ++ P+++ +L+ I + + T I + GHTD + N +LS RA + Sbjct: 690 FEFNKAVLTPKSLEILKPILATMKENETLEIELSGHTDN--IGSKQY-NRKLSEARAKAV 746 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L+K+G+ RI + G+ + ++D NRR ++ + Sbjct: 747 ADYLIKNGIDPKRIKTV-GYGFDKPIASNDTPEGRQRNRRTEMKIL 791 >gi|319796166|ref|YP_004157806.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315598629|gb|ADU39695.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 273 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 79/239 (33%), Gaps = 18/239 (7%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 ++ + V + + +R+ + + + + + + Sbjct: 42 GEQVVAGGQVPDEATRVAVIEALRRIYGPSGVVDKIEVVNTVSMPANWSANVQRLITPAL 101 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFET 219 + LS E R+K + D+A + + T+ + + + + + Sbjct: 102 KDIHRGQFQIEGTQMALSGEVGNEALRQKIVSDMANSLNPTYTIKNSLRVPVSEQITVDQ 161 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 I F+ S+ + +L ++ +L T +++ GHTD Sbjct: 162 ALANRTIE---------FELGSATLTRKGRDILDEMAPILQKLTNKSVAVIGHTDN---A 209 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 N LS RA + L+ G+ ++ SG + A+D S NRRI+ Sbjct: 210 GSRASNLALSQSRAEAVKGYLVGKGIDPMTLT-TSGVGPDQPVANNATDEGRSRNRRIE 267 >gi|319952716|ref|YP_004163983.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319421376|gb|ADV48485.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 337 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 106/283 (37%), Gaps = 24/283 (8%) Query: 58 DDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGS 117 +D K + YF+ + K +M F+ +D ++ +++ + Sbjct: 74 NDVAKNGMTNYFD-YNKLIMYTGTSFFNADGK---------KAELDFAMSDRTIEFEQYK 123 Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 +Q ++ + Q L ++ +K D S + ++Y L Sbjct: 124 FDQSIEHYLERIGAQLIFKGQIPREKIEHLNKEDDKTVFKYIQGDPYNS-SPVKHYVLNH 182 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 ++ + I + ++ + + + + + +TG I I+ F Sbjct: 183 VNGKIIFQVWSNSARAEIGVVALESFNQTIKAPTASEMKSDIDKTGKAILNIN------F 236 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 D + P+ ++ +I +L + +SI GHTD+ N +LS+DRA + Sbjct: 237 DTDKATLKPDGETLVAEIFTLLNENDSLKLSIEGHTDS---SGNVERNKQLSMDRANTVL 293 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L G++ +R++ GF +D + NRR++++ Sbjct: 294 YTLAGKGIAINRLTA-KGFGAKNPISPNDSEENKAKNRRVELV 335 >gi|114800290|ref|YP_762003.1| OmpA family protein [Hyphomonas neptunium ATCC 15444] gi|114740464|gb|ABI78589.1| OmpA family protein [Hyphomonas neptunium ATCC 15444] Length = 211 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 G E R G I++ + F + S+ P L + L + IRGH Sbjct: 84 GTGIEVERQGDQIALT-MPSGISFQQGSAQIQPAFYQTLNDVAATLNEYPSTAVDIRGHA 142 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSAN 331 + R+ N RLS RA + L GV R+S + G + +++ S N Sbjct: 143 SSEGARDF---NQRLSQQRADAVRSYLTNQGVQGVRMSAVGMGIDYPVADNSTEAGRSQN 199 Query: 332 RRIDILVED 340 RR++I++ Sbjct: 200 RRVEIILTP 208 >gi|91782349|ref|YP_557555.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans LB400] gi|296162308|ref|ZP_06845102.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|91686303|gb|ABE29503.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] gi|295887462|gb|EFG67286.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 217 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272 G I +Q + + FD +S P VL ++ + + + E+I+ + GHT Sbjct: 85 GTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHT 144 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D++ N LS++RA S L + GV+ R+S G + ++ +A Sbjct: 145 DST---GQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSA-QGMGQTQPIADNNTEAGRAA 200 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 201 NRRVEIYL 208 >gi|262404553|ref|ZP_06081108.1| outer membrane protein A precursor [Vibrio sp. RC586] gi|262349585|gb|EEY98723.1| outer membrane protein A precursor [Vibrio sp. RC586] Length = 321 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ P L K+ L + + + GHTD++ N +LS R Sbjct: 208 DSGTFANNSAQLKPAMESKLDKLVGYLKQYPQATVEVVGHTDST---GSDAYNQKLSEKR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + + L G+ RI+ G ++ NRR+++++ Sbjct: 265 AQAVAKALEAQGIEASRITA-KGQGESNPIASNATAEGREKNRRVELVI 312 >gi|224372468|ref|YP_002606840.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH] gi|223589113|gb|ACM92849.1| thrombospondin type 3 repeat:OmpA/MotB [Nautilia profundicola AmH] Length = 373 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 17/126 (13%) Query: 219 TTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 T G+++ D+ M FD S+ P+ + +++ E L + I+G Sbjct: 249 NTPKGVVV---DEHGCAMTYDFGITFDNDSADIKPQFMKKIEEFAEFLKQNPAYKAEIQG 305 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-- 328 +TD+ + A N +LS RA + Y+VL+K G+S+DR+ G+ ++D + Sbjct: 306 YTDS---KGSAEYNQKLSERRAKAVYEVLIKQGISKDRL-SYKGYGEANPVASNDTPDGK 361 Query: 329 SANRRI 334 + NRR+ Sbjct: 362 AQNRRV 367 >gi|253700958|ref|YP_003022147.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251775808|gb|ACT18389.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 222 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 + R G I + + +FDK+ + P + L + L S I I+GHTD+ Sbjct: 90 QVERQGEKIYVT-LPSGILFDKNKDLLKPAFMESLARAASSLRESQTDIIIQGHTDS--- 145 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 N LS RA L+ GV R+ I G+ R + +D + NRR+ Sbjct: 146 SGSDAINLPLSQRRADRVRDYLVAQGVPTSRLIAI-GYGATRPQFPNDSEANRLLNRRVQ 204 Query: 336 ILV 338 + + Sbjct: 205 LEI 207 >gi|146282939|ref|YP_001173092.1| ompA family protein [Pseudomonas stutzeri A1501] gi|145571144|gb|ABP80250.1| ompA family protein [Pseudomonas stutzeri A1501] Length = 263 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 73/178 (41%), Gaps = 11/178 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 E + + E + R +R+ A+ +++ G ++ + + T Sbjct: 82 SEIAARQGELLQHQEQVARLEMERDRLRRMLQDAQLMTAEQQGRWLEDQMMSLAASETDR 141 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G+++++ D +F S+ L K+ L + + + I G++D+ R Sbjct: 142 GLVMTLGD----VLFHPDSAELGNSANRTLLKLVHFLQLNPQRKVRIEGYSDS---RGDP 194 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 + N LS RA + +L+ G+ +R+ + G+ AS + NRR++IL Sbjct: 195 QANLELSRARAQTVADLLISLGIEAERVE-VRGYGERFPIAENASARGRAQNRRVEIL 251 >gi|159045565|ref|YP_001534359.1| OmpA/MotB domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157913325|gb|ABV94758.1| OmpA/MotB domain protein [Dinoroseobacter shibae DFL 12] Length = 208 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 10/146 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + L A+ V T + +++++ +F S++ L + Sbjct: 70 LDRQARDLQAELGNDAVQIVNTGSELVVTM---PQDILFAVDSAVVQSTLQSDLAALSRN 126 Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + GHTD + A N LS RA + +L+++GV R+ G Sbjct: 127 LLDYPDTTVQVVGHTDNT---GSAGYNQELSQRRASAVAAILLQNGVPSSRVVA-FGRGE 182 Query: 318 HRLKIAS--DPMNSANRRIDILVEDR 341 + ++ + + NRR++I++ R Sbjct: 183 DQPIASNLDEAGRAQNRRVEIIITPR 208 >gi|260599847|ref|YP_003212418.1| putative outer membrane lipoprotein [Cronobacter turicensis z3032] gi|260219024|emb|CBA34379.1| Inner membrane lipoprotein yiaD [Cronobacter turicensis z3032] Length = 220 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR+G I I++ N FD S + P L + VL Sbjct: 83 VQEAKLRQKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSQANLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N +LS RA S L+ GV+ +RI + SG Sbjct: 142 PKTAVNVVGYTDST---GGQALNMKLSQQRAESVASALITQGVAANRI-RTSGMGPANPV 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTEEGKAQNRRVEITLSPLQ 220 >gi|124007996|ref|ZP_01692696.1| outer membrane protein [Microscilla marina ATCC 23134] gi|123986580|gb|EAY26379.1| outer membrane protein [Microscilla marina ATCC 23134] Length = 336 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 11/135 (8%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 I + G+ I + N F SSS + L ++ L + V+ Sbjct: 209 KEIKVDLFVTPIEKGVKILL----NNLFFGVSSSKIESTSFDELDRLVRTLNEYPKMVVQ 264 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 + GHTD A N LS RA S L G++ R+ K+ GF + ++ Sbjct: 265 LNGHTDNQ---GGATRNQLLSQHRARSVRNYLANKGIARHRV-KVKGFGASQPIADNNTL 320 Query: 327 -MNSANRRIDILVED 340 NRR++ V + Sbjct: 321 KGRIRNRRVEFEVLE 335 >gi|296100590|ref|YP_003610736.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055049|gb|ADF59787.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 220 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMKGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N RLS RA S L+ GV +RI + SG Sbjct: 142 NKTAVNVIGYTDST---GSQELNMRLSQQRADSVASSLITQGVEANRI-RTSGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPIQ 220 >gi|256425383|ref|YP_003126036.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256040291|gb|ACU63835.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 449 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 7/144 (4%) Query: 198 KISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K+ + L D + K V+ + T I D F+ + S + L ++ Sbjct: 309 KVDGSGCELPKDTMPKQVITKVTITEDDRRLIKDAIQNLEFEFAKSSIKASSYPSLDRVA 368 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 E+L + + GHTD A N LS DRA S Q L++ G + +I + G+ Sbjct: 369 EMLRTKGFSLKLGGHTDNV---GNATKNMALSKDRAESVKQYLVEHGANPSKIEAV-GYG 424 Query: 317 HHRLKIASDPMNSA--NRRIDILV 338 ++ ++ NRR++ + Sbjct: 425 ANQPIASNKTAAGRQKNRRVEFTI 448 >gi|218550833|ref|YP_002384624.1| outer membrane lipoprotein [Escherichia fergusonii ATCC 35469] gi|218358374|emb|CAQ91021.1| putative outer membrane lipoprotien [Escherichia fergusonii ATCC 35469] gi|324111886|gb|EGC05866.1| OmpA family protein [Escherichia fergusonii B253] gi|325499107|gb|EGC96966.1| outer membrane lipoprotein [Escherichia fergusonii ECD227] Length = 219 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD +S+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSNSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N RLS RA S L+ GV+ +RI+ G Sbjct: 142 PKTAVNVLGYTDST---GGYDLNMRLSQQRADSVASALITQGVAANRIN-TRGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|169796598|ref|YP_001714391.1| hypothetical protein ABAYE2575 [Acinetobacter baumannii AYE] gi|215484059|ref|YP_002326284.1| OmpA family protein [Acinetobacter baumannii AB307-0294] gi|301344741|ref|ZP_07225482.1| OmpA family protein [Acinetobacter baumannii AB056] gi|301510762|ref|ZP_07235999.1| OmpA family protein [Acinetobacter baumannii AB058] gi|301595171|ref|ZP_07240179.1| OmpA family protein [Acinetobacter baumannii AB059] gi|332853538|ref|ZP_08434802.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332868403|ref|ZP_08438134.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|169149525|emb|CAM87414.1| conserved hypothetical protein; putative bacterial outer membrane domain [Acinetobacter baumannii AYE] gi|213987872|gb|ACJ58171.1| OmpA family protein [Acinetobacter baumannii AB307-0294] gi|332728571|gb|EGJ59943.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332733402|gb|EGJ64585.1| OmpA family protein [Acinetobacter baumannii 6013113] Length = 471 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L T + + GHT Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVTGVKLDVGGHT 405 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 462 NRRIEFSV 469 >gi|30043431|gb|AAP19151.1| putative outer membrane protein [Shigella flexneri 2a str. 2457T] gi|56383924|gb|AAN45037.2| putative outer membrane protein [Shigella flexneri 2a str. 301] gi|332763439|gb|EGJ93678.1| ompA family protein [Shigella flexneri 2930-71] Length = 208 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 72 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEY 130 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 131 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 186 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 187 ASNSTAEGKAQNRRVEITL 205 >gi|320535353|ref|ZP_08035469.1| OmpA family protein [Treponema phagedenis F0421] gi|320147797|gb|EFW39297.1| OmpA family protein [Treponema phagedenis F0421] Length = 437 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 12/143 (8%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + + + + I I++ D R F S LPE + I L Sbjct: 302 NIKKMFSKETPDSINMRPGINTIKITMYDIR----FIADSPEILPEEKGRVDIIARALRA 357 Query: 262 ST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 I GHT N ++ LS+ RA + L K G+ R++ +G+ R Sbjct: 358 MGPYTKFLIEGHTADI---NQPKNQLVLSVARADKIAEELAKRGIDASRMT-TAGYGGTR 413 Query: 320 LKIASD--PMNSANRRIDILVED 340 +D P + NRR++I + Sbjct: 414 PIAPNDTSPNRAKNRRVEITIMR 436 >gi|347155|gb|AAC36900.1| protein F [Pseudomonas fluorescens] Length = 317 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K G++ +R+S + G+ R A++ + NRR++ Sbjct: 275 KQVLVKDGIAPNRVSSV-GYGKSRPVADNATEAGRAINRRVE 315 >gi|312795362|ref|YP_004028284.1| OmpA family protein [Burkholderia rhizoxinica HKI 454] gi|312167137|emb|CBW74140.1| OmpA family protein [Burkholderia rhizoxinica HKI 454] Length = 224 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 14/146 (9%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + I + LSG A G G + ++I ++ FD +S P VL ++ Sbjct: 81 QAIKNKLSGATAG---TGTQVSEQPDGSLKLNI---PSSVSFDTNSYAIKPSFTPVLDQV 134 Query: 256 GEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + L E+++ + GHTD++ R N LS +RA S Q L GV+ R++ G Sbjct: 135 AQTLTQHPELVAHVVGHTDST---GQPRYNQMLSQERAQSVAQYLALHGVAAQRLAA-EG 190 Query: 315 FAHHRLK--IASDPMNSANRRIDILV 338 + +++ + NRR++I + Sbjct: 191 RGQSQPIADNSTEAGRAQNRRVEIYL 216 >gi|312890939|ref|ZP_07750468.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311296722|gb|EFQ73862.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 252 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 + R G I I+ + +FD + P + ++ L + E I I GHTD + Sbjct: 118 QVVREGEGI-IVKFDSGILFDIDKTALKPVAKTNIDQLSASLKKNPETNILIVGHTDNT- 175 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 A N LS+ RA + + +GV R++ G + ++ NRR+ Sbjct: 176 --GTAAHNMDLSVRRAEAVKAYAIAAGVDASRLT-TQGKGDTEPIADNTTVDGRTQNRRV 232 Query: 335 DILV 338 +I++ Sbjct: 233 EIVI 236 >gi|309787755|ref|ZP_07682366.1| inner membrane lipoyiaD domain protein [Shigella dysenteriae 1617] gi|308924505|gb|EFP70001.1| inner membrane lipoyiaD domain protein [Shigella dysenteriae 1617] Length = 147 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 11 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 69 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 70 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 125 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 126 ASNSTAEGKAQNRRVEITL 144 >gi|257470656|ref|ZP_05634746.1| Outer membrane protein [Fusobacterium ulcerans ATCC 49185] Length = 217 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K + ++ G +++ F SS + L I VL E I + G Sbjct: 88 LKNTEVQVSQNGDNLNLN-LPGGVTFATDSSNIVSSFYGPLNSIATVLVQYPETRIIVNG 146 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNS 329 +TD + + + LS RA S L++ GVS RIS + G + R ++ + Sbjct: 147 YTDN--VGSASYNV-SLSERRAASVRNYLIQQGVSARRISYVGYGMENPRATNSTAAGRA 203 Query: 330 ANRRIDILVED 340 NRR+++ + Sbjct: 204 ENRRVELEILP 214 >gi|188036026|pdb|2K1S|A Chain A, Solution Nmr Structure Of The Folded C-Terminal Fragment Of Yiad From Escherichia Coli. Northeast Structural Genomics Consortium Target Er553 Length = 149 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 5 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 63 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 64 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 119 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 120 ASNSTAEGKAQNRRVEITL 138 >gi|332143465|ref|YP_004429203.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553487|gb|AEB00206.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 213 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDAS 275 + R G + +I F S+ P VLQ + +V+ + + + I+GHTD + Sbjct: 86 VQVVREGDNLRLI-MPGDITFATDSASISPNFNPVLQDVAKVVNNYEKTVLMIKGHTDDT 144 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + N LS RA + +L+ V+ RI+ + G + K+ ++ S NRR Sbjct: 145 ---GSEQYNQSLSERRAGAVKNLLINYSVNPTRITTV-GMGEYSPKVPNNSAANRSMNRR 200 Query: 334 IDILVED 340 +++ ++ Sbjct: 201 VEMEIQP 207 >gi|37521397|ref|NP_924774.1| outer membrane protein [Gloeobacter violaceus PCC 7421] gi|35212394|dbj|BAC89769.1| glr1828 [Gloeobacter violaceus PCC 7421] Length = 227 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 20/213 (9%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + +R E +++ E + P E + S Sbjct: 24 NPAPTTASRSGEPAVSTQPIGRSLVALDPSEVALMSPTGSETAADSAGGSATRSTQIAAS 83 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 T V + I+ + T +GI++++ +FD + P V LQK+ +V+ Sbjct: 84 ET---QVVNQILSDFNAQRTASGIVVTL---PEDILFDFDKADLRPSAQVALQKMAQVIN 137 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 I I GHTD+ + N LS RA + L + V+ R++ G Sbjct: 138 FYKNAPIEISGHTDS---KGADGYNRSLSERRAEAVRSYLANNFSVTTGRLTA-RGLGEG 193 Query: 319 RLKIAS-------DP-MNSANRRIDILVEDRQG 343 + + DP NRR++IL++++ G Sbjct: 194 KPVAPNTKPDGSDDPAGRQKNRRVEILIKNQPG 226 >gi|330959642|gb|EGH59902.1| hypothetical protein PMA4326_13904 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 220 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 9/110 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P L + L +++I GHTD++ + +N LS RA + Sbjct: 117 FATGSADLQPAAFQGLSAVANALKDQKDLMLNITGHTDST--GSRQFNNL-LSYARAQAV 173 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 Q L +GV ++ + G + NRR++I + +QG Sbjct: 174 AQYLYAAGVPA-QVIAVRGVGPSMPVATDATSQGRAQNRRVEIQI--KQG 220 >gi|319778078|ref|YP_004134508.1| ompa/motb domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171797|gb|ADV15334.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 369 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA--SPFRNIARDNWRLSLDRAY 293 F +S+ ++ +L ++ V+ + + GHTD+ SP N RLS RA Sbjct: 264 FRTASARLDSQSRPLLAEVVGVVGKCPGLKVEVSGHTDSDGSPIE-----NKRLSERRAQ 318 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + ++ +G+ +I+ +G+ R +D + NRRI+ Sbjct: 319 AVADAIVAAGIPRTQIAA-TGYGEERPVADNDTPKNKALNRRIE 361 >gi|84503479|ref|ZP_01001534.1| OmpA family protein [Oceanicola batsensis HTCC2597] gi|84388157|gb|EAQ01110.1| OmpA family protein [Oceanicola batsensis HTCC2597] Length = 226 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V T +++++ +F S+ P+ L + L Sbjct: 92 EAALRSELGSNVQIVNTGDRLVVTM---PQDILFATDSASLRPDLTTDLVTVARSLNEYP 148 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + GHTD + A N +LS RA + VL+ SGVS RI G + + Sbjct: 149 RTTVQVVGHTDNT---GDAAYNQQLSARRASAVANVLINSGVSAGRIQS-FGRGEDQPRA 204 Query: 323 AS--DPMNSANRRIDILVED 340 + NRR+DI++ Sbjct: 205 TNLTPEGRQLNRRVDIVILP 224 >gi|301047095|ref|ZP_07194195.1| OmpA family protein [Escherichia coli MS 185-1] gi|300300982|gb|EFJ57367.1| OmpA family protein [Escherichia coli MS 185-1] Length = 219 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANPLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALIPQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAEGKAQNRRVEITL 216 >gi|115373807|ref|ZP_01461100.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] gi|115369206|gb|EAU68148.1| thrombospondin type 3 repeat family [Stigmatella aurantiaca DW4/3-1] Length = 663 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 82/271 (30%), Gaps = 11/271 (4%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P + + D+ ++ + D ++S D + + + Sbjct: 388 PLKDEDKDGVEDVADKCPQTPGAASAQGCPDQDGDGIQDSEDKCPAAAGNAAGQGCPDKD 447 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + ++ + + + + N P K Sbjct: 448 GDGIDDASDRCPAEAGPAERQGCPIKDADNDGVLDEQDSCPNEAGLPELKGCPAKDADND 507 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 L D + + I I + FD ++S + Sbjct: 508 TLADHLDNCPNEAGPVDNQGCPAKQKQLVAIRQDRIEI---KEAVYFDSNASTIQARSNG 564 Query: 251 VLQKIGEVLAHSTEVIS--IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L ++ ++L E++S I GHTD R A N LS RA + L+K GV+ +R Sbjct: 565 LLDQMAKLLNEHPEIVSVLIEGHTDD---RGAADYNRTLSKQRADTVRDYLVKKGVAAER 621 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + G+ R + NRR+D L Sbjct: 622 LE-TQGYGPDRPVQPNTTAAGRTANRRVDFL 651 >gi|300779346|ref|ZP_07089204.1| proteobacterial sortase system OmpA family protein [Chryseobacterium gleum ATCC 35910] gi|300504856|gb|EFK35996.1| proteobacterial sortase system OmpA family protein [Chryseobacterium gleum ATCC 35910] Length = 229 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 18/156 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ A+ I TL G + + G+ SI++ F SS Sbjct: 79 NKMDKQARDIKETLPGAQVERVGDGIKVTMNE-----SIVN------FAFDSSNLTSVAQ 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ EVLA++ + I+I GHTD+ + N +LS RA + L G++ R Sbjct: 128 TNLDKLAEVLANNPDTNINIYGHTDS---KGSDDYNLKLSQRRADAVKAYLTGKGIASSR 184 Query: 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + G ++D + NRR++ + + Sbjct: 185 MF-TKGEGEAMPVASNDTEEGRAKNRRVEFAITANE 219 >gi|330829325|ref|YP_004392277.1| OmpA family protein [Aeromonas veronii B565] gi|328804461|gb|AEB49660.1| OmpA family protein [Aeromonas veronii B565] Length = 162 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K F T G + D N +F + P+T ++K+G+ L + + Sbjct: 36 VLKEQGFYLTDEGWTL---DLANRVLFANNVGALNPQTRQSVEKLGKTLLGVGLDKARVD 92 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD + + N +LSL RA S VL+ G+ + I G + Sbjct: 93 GHTDNT---GESSYNQQLSLKRAQSVADVLVSVGMKPANLE-IHGRGETMPLADNKTREG 148 Query: 328 NSANRRIDILVEDR 341 +ANRR+ I++ D+ Sbjct: 149 RAANRRVAIVISDQ 162 >gi|146281506|ref|YP_001171659.1| OmpA family protein [Pseudomonas stutzeri A1501] gi|145569711|gb|ABP78817.1| OmpA family protein [Pseudomonas stutzeri A1501] gi|327479683|gb|AEA82993.1| OmpA family protein [Pseudomonas stutzeri DSM 4166] Length = 217 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 ++G + R G +++I F +S+ L + +V + + I Sbjct: 88 QTLQGTGVQVQRNGDNLTLI-MPGNITFASNSADISSSFYPTLNSLVQVFKEFNKNGVDI 146 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD++ + N LS RA S L+ +GV+ RIS G + ++D Sbjct: 147 VGHTDST---GSLQLNQDLSNRRAQSVASYLIANGVAPARISS-YGAGPSQPIASNDTAA 202 Query: 327 MNSANRRIDI 336 + NRR++I Sbjct: 203 GRAQNRRVEI 212 >gi|183221257|ref|YP_001839253.1| OmpA domain-containing protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911348|ref|YP_001962903.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776024|gb|ABZ94325.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779679|gb|ABZ97977.1| Putative outer membrane protein, OmpA domain; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 271 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 6/145 (4%) Query: 199 ISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIG 256 +++ + + +G+ L ++ R G +++ + + F+ + + + K+ Sbjct: 128 LNTMYDNMAEEMKKQGITLTKSERGGETVALTATMDGGIAFEDGKADLKGKGKENVDKLA 187 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 E LA E I+I GH + + N RLS DRA +A ++++GV RI + G Sbjct: 188 EALAAYPETKINITGHANRT---GAEDLNLRLSQDRAVTAKDAIIENGVEGKRIGTVQGL 244 Query: 316 AHHRLKIASDPMNSANRRIDILVED 340 DP + +NRR+++ + Sbjct: 245 GSSTPMKNVDPKDGSNRRVEVEIVP 269 >gi|332296685|ref|YP_004438607.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] gi|332179788|gb|AEE15476.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] Length = 475 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268 N E T+ G+ +S+ D R F S+ L E L I ++L + + + Sbjct: 350 NTASLFEIEDTQQGLRLSVRDIR----FRPDSAEILSEESWRLDAIADMLRSEPDAVYLV 405 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHT + + +LS++RA + L+ G +++ +G+ R + Sbjct: 406 EGHTASVGKPEGEK---KLSVERAQAVVAALVSRGFRKEQFL-FTGYGGTRSVADNGTAA 461 Query: 327 MNSANRRIDILVED 340 + NRR++I + Sbjct: 462 GRAENRRVEITILR 475 >gi|325294095|ref|YP_004279959.1| porin [Agrobacterium sp. H13-3] gi|325061948|gb|ADY65639.1| porin [Agrobacterium sp. H13-3] Length = 220 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I + + F +P L + VL I I Sbjct: 91 LQGTGVSVTRRGDSIVLN-MPSNITFATDQDQVIPPFYQTLDSVAIVLNKF-NRTLIDIN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD++ + N LS RA S L GV + RIS + GF + ++ Sbjct: 149 GHTDST---GSQQHNQALSERRAASVANYLGARGVDQRRISTL-GFGPSQPIASNATPDG 204 Query: 328 NSANRRIDILVEDRQG 343 + NRR+++L+ +G Sbjct: 205 RAQNRRVEVLISPLKG 220 >gi|311277523|ref|YP_003939754.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1] gi|308746718|gb|ADO46470.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1] Length = 220 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++G TR+G I I++ N FD SS+ P L + VL + +++ Sbjct: 90 QKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYEKTAVNV 148 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 G+TD++ +++ N RLS RA S L+ GV+ +RI + +G ++ Sbjct: 149 VGYTDSTGSKDL---NMRLSQQRADSVASSLITQGVAANRI-RTTGMGQANPIASNSTAE 204 Query: 329 --SANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 205 GKAQNRRVEITLSPLQ 220 >gi|156936282|ref|YP_001440198.1| putative outer membrane lipoprotein [Cronobacter sakazakii ATCC BAA-894] gi|156534536|gb|ABU79362.1| hypothetical protein ESA_04181 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR+G I I++ N FD S + P L + VL Sbjct: 83 VQEAKLRQKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSQANLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N +LS RA S L+ GV+ +RI + SG Sbjct: 142 PKTAVNVVGYTDST---GGQALNMKLSQQRAESVASALITQGVAANRI-RTSGMGPANPV 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTEEGKAQNRRVEITLSPLQ 220 >gi|260060612|ref|YP_003193692.1| OmpA family protein [Robiginitalea biformata HTCC2501] gi|88784742|gb|EAR15911.1| OmpA family protein [Robiginitalea biformata HTCC2501] Length = 623 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 17/221 (7%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G + R ++I+ + +Q+ ++ +D + +++ + Sbjct: 377 GYFASNRPGGRGSDDIYGFTTTQKPGLKTLVVSGQVVSSEDAGVQQARVRLLDEADRVVR 436 Query: 176 PPLSKEK-----ILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGV-------LFETTRT 222 +++ + + RL D + S+ L G D+I+ GV + Sbjct: 437 ETYTRQNGAFRIEIPWQENMRLSIDKPRYTSAALGGPGQDSIISGVPARIALRSVDEVVR 496 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 + + F + SS E LQ+ + L I I HTD+ R Sbjct: 497 SVRERQELKAEKFYFGRGSSRLTDEIRTALQEPLQALRDFPGLHIRIEAHTDS---RGSE 553 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + N LS RA + L+++G+ +RI I GF +L+ Sbjct: 554 QANLSLSRQRAEAIRDYLVENGIDAERIEGIEGFGESQLQN 594 >gi|239993109|ref|ZP_04713633.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Alteromonas macleodii ATCC 27126] Length = 213 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 8/134 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SI 268 N + + R G + +I F SS P VLQ + +V+ + + + I Sbjct: 79 NELSDTGVQVVREGDNLRLI-MPGDITFATDSSSISPNFNPVLQDVAKVVNNYEKTVLMI 137 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326 +GHTD + + N LS RA + +L+ V+ RI+ + G + K+ ++ Sbjct: 138 KGHTDDT---GSEQYNQSLSERRAGAVKNLLINYSVNPTRITTV-GMGEYAPKVPNNSAA 193 Query: 327 MNSANRRIDILVED 340 S NRR+++ ++ Sbjct: 194 NRSMNRRVEMEIQP 207 >gi|157736518|ref|YP_001489201.1| OmpA domain-containing protein [Arcobacter butzleri RM4018] gi|315635678|ref|ZP_07890941.1| OmpA domain protein [Arcobacter butzleri JV22] gi|157698372|gb|ABV66532.1| OmpA domain protein [Arcobacter butzleri RM4018] gi|315479975|gb|EFU70645.1| OmpA domain protein [Arcobacter butzleri JV22] Length = 241 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 13/158 (8%) Query: 192 LQDLAKKISSTLSGLVADNIV------KGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + A++++ +L+ V +N + ++ T + I D MF+ +S+ P Sbjct: 82 MDKQAQEVAQSLNTNVNNNPQAVLDPNQDLIVSNTDNYVKIMFRDSM---MFETNSANPT 138 Query: 246 PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 + KI VL + + GHTD+ R N LS RA + ++ SGV Sbjct: 139 YSAQTKISKIYSVLQKYPNTLVQVVGHTDS---RGTHTYNQTLSEQRATNVGNIIYNSGV 195 Query: 305 SEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 S S+ F S+ + NRR+++ + Q Sbjct: 196 SNQIFSRGCSFDKPVALNNSESNMALNRRVEVYLYPNQ 233 >gi|262068028|ref|ZP_06027640.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693] gi|291378250|gb|EFE85768.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693] Length = 403 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE V L+ + VL + I GHTD+ N Sbjct: 292 LITLDSGILFDVDKYDVRPEAEVALKNLAVVLKEADVKAFQIDGHTDSDA---SDEHNQV 348 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 LS +RA + L G++ + I+G+ R ++D NRR++I++ Sbjct: 349 LSENRANAVKSFLAAQGLTAE--ISINGYGESRPIASNDTAEGKQKNRRVEIII 400 >gi|152972417|ref|YP_001337563.1| putative outer membrane lipoprotein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578997|ref|YP_002236080.1| OmpA family protein [Klebsiella pneumoniae 342] gi|238897010|ref|YP_002921755.1| putative outer membrane lipoprotein [Klebsiella pneumoniae NTUH-K2044] gi|262040618|ref|ZP_06013856.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288933077|ref|YP_003437136.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|290511871|ref|ZP_06551239.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55] gi|329999890|ref|ZP_08303557.1| OmpA family protein [Klebsiella sp. MS 92-3] gi|150957266|gb|ABR79296.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568055|gb|ACI09831.1| OmpA family protein [Klebsiella pneumoniae 342] gi|238549337|dbj|BAH65688.1| putative outer membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041982|gb|EEW43015.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288887806|gb|ADC56124.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|289775661|gb|EFD83661.1| outer membrane lipoprotein [Klebsiella sp. 1_1_55] gi|328538172|gb|EGF64327.1| OmpA family protein [Klebsiella sp. MS 92-3] Length = 220 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD +S+ P L + VL Sbjct: 83 VQEAKLRDKMQGTGVSVTRNGDNIVLN-MPNNVTFDSNSANLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ +++ N RLS RA S L+ GV+ +RI + +G Sbjct: 142 EKTAVNVVGYTDSTGSKDL---NMRLSQQRADSVASALITQGVAANRI-RTTGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPLQ 220 >gi|261416894|ref|YP_003250577.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373350|gb|ACX76095.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326780|gb|ADL25981.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 774 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 10/113 (8%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH----STEVISIRGHTDASPFRNIARDN 284 +++ F S+ +L+ I + L I I+GHTD R A+ N Sbjct: 646 VEKLEGISFKSGSATVNANAKRILKGIAQKLKEDEAYKDLKIVIQGHTDN---RGKAKKN 702 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 +LS RA + + L K GV+++RI + G + + NRRI+ Sbjct: 703 LKLSDRRAKAVMKQLTKFGVAKNRIKAV-GLGSTCPVDDNSTADGREMNRRIE 754 >gi|327405084|ref|YP_004345922.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320592|gb|AEA45084.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 681 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 97/256 (37%), Gaps = 18/256 (7%) Query: 97 KIDLSIDEHITKNSVDLKIGS--TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154 I+ + DE S D K+ + Q+ + +++ + + K L + K Sbjct: 429 PINTAEDEIGIFVSTDGKLAYYSSQQQGNWDIYGFDLYEEARPKAVTIIKGDLKDPTGKP 488 Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + +S +K E + + + +K +K QD+ + + + I K Sbjct: 489 IENAIIEVAYESSDKVEQVRVNGNDGKYAVVVKTEKP-QDIMVSVKKDGAAFDSKLITKE 547 Query: 215 VLFETTRT--------GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265 + + + + N ++D +S ++ +L++ L + Sbjct: 548 EIVKKENRVNNNLEVKELKVGEAYTINDILYDYNSDFLSTKSKFILREFARFLKSNPTVK 607 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I ++GHTD+ N LS RA L G+ DR+ G+ + K+ +D Sbjct: 608 IMVQGHTDSD---GDDAKNLDLSDRRAKGVKAYLQSQGIESDRLEA-KGYGETKPKVEND 663 Query: 326 -PMN-SANRRIDILVE 339 P N + NRR D L++ Sbjct: 664 TPENKAKNRRTDFLIQ 679 >gi|194365341|ref|YP_002027951.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194348145|gb|ACF51268.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 231 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I + + FD + P+ L + L + +I + GHT Sbjct: 104 NTGIDVQRQGDNIMLN-LPDGITFDFGKATLKPQFYGSLNGVAGTLRDYNQTMIEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ + A +N RLS +RA S Q L+ GV RI + +G ++ ++D + N Sbjct: 163 DS--IGSDAVNN-RLSKERADSVAQYLVGQGVQSVRIETLGAGKSYPIADNSTDAGRAKN 219 Query: 332 RRIDILVEDRQ 342 RR++I V + Sbjct: 220 RRVEIRVIPLK 230 >gi|124002652|ref|ZP_01687504.1| OmpA/MotB [Microscilla marina ATCC 23134] gi|123991880|gb|EAY31267.1| OmpA/MotB [Microscilla marina ATCC 23134] Length = 352 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S + + +L ++ +L + I + GHTD + N LS +RA Sbjct: 236 KVLFAFSKAEIKTVSFSILDEVVRLLKKYPKSNIHLEGHTDNV---GKDQSNLILSKNRA 292 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 S Q + G++ +RI+ I G R + NRR+D++ Sbjct: 293 ASVRQYFINKGINANRITSI-GHGEQRPIDTNTTAKGRQNNRRVDMV 338 >gi|78213752|ref|YP_382531.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like [Synechococcus sp. CC9605] gi|78198211|gb|ABB35976.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like [Synechococcus sp. CC9605] Length = 217 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 12/120 (10%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 +ID + +FD S P L+ + + + I GHTD+ + N Sbjct: 97 LIDISSDILFDFDKSSLKPSAFPSLRIASKQITEMARGDVRIEGHTDS---KGADAYNQS 153 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--------MNSANRRIDILV 338 LS RA S + L+++G D + GF + ++ NRR++I+V Sbjct: 154 LSEARAESVRKWLVENGGLTDINFVVRGFGETKPIEPNETDKGEDNPAGRQRNRRVEIIV 213 >gi|269793616|ref|YP_003313071.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Sanguibacter keddieii DSM 10542] gi|269095801|gb|ACZ20237.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Sanguibacter keddieii DSM 10542] Length = 430 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIA 281 G I++ D +FD PE+ L + LA + + I GHTD+ + A Sbjct: 311 GTTITLSD---AALFDFGKHTLRPESQQTLDSLAAALAETGAPVLQIGGHTDS--ISDDA 365 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP-MNSANRR 333 N LS DRA + L++ GV+ + +G+ + +P NRR Sbjct: 366 F-NQTLSEDRAQAVADGLVERGVTAT--LETTGYGETQPVAPETTADGADNPAGRQLNRR 422 Query: 334 IDILV 338 ++I V Sbjct: 423 VEIFV 427 >gi|302326566|gb|ADL25767.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 215 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 10/192 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-SGLVADNIV 212 ++ K ++I + S + K+ ++ K+ ++ + N + Sbjct: 25 AENWEKRAATNRTIEAIQEQIGEARSGKVSDLEAEKQAIKAQKDKLEASKNEAMDKLNAL 84 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGH 271 + + + T+ I + + +FD + + + L KI +L+ + +SI G+ Sbjct: 85 QSQMIQVTKDARGIIL--SMSDILFDVGRATLKTDLMTSLAKIAGILSVYQQFDVSIEGN 142 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 TD + N LS RA + + L++ G++E R++ G + Sbjct: 143 TDNT---GSEEFNMTLSQQRAENVMKFLVEQGIAETRLTA-KGLGMTMPIADNSTKEGRQ 198 Query: 330 ANRRIDILVEDR 341 NRR+D+++ DR Sbjct: 199 KNRRVDLVITDR 210 >gi|4580969|gb|AAD24556.1|AF117964_1 OprF [Pseudomonas fuscovaginae] Length = 326 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 221 FDFNKAVVKPNSYGDVKNLADFMKQYPQTTTVVSGHTDSV---GTDAYNQKLSQRRADAV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 QVL+K G++ +RI + + R A++ + NRR++ VE Sbjct: 278 KQVLVKDGIAPNRIQSVV-YGKTRPVADNATEAGRAINRRVEASVE 322 >gi|291619700|ref|YP_003522442.1| Hypothetical Protein PANA_4147 [Pantoea ananatis LMG 20103] gi|291154730|gb|ADD79314.1| Hypothetical Protein PANA_4147 [Pantoea ananatis LMG 20103] Length = 595 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD S T +++ + + A +I + GHTD + + N Sbjct: 457 IVRLDSMSLFDSGKSALKDGSTKMLVNSLVGIKAKPGWLIIVSGHTDNT---GNPQLNQA 513 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA + + +G + + G+ R A+ + NRR++I + + Sbjct: 514 LSLKRAEAVRNWMRDTGGVPESCFAVQGYGESRPVAANGTPEGRALNRRVEISLVPQ 570 >gi|85375533|ref|YP_459595.1| outer membrane protein [Erythrobacter litoralis HTCC2594] gi|84788616|gb|ABC64798.1| outer membrane protein [Erythrobacter litoralis HTCC2594] Length = 231 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 10/151 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + + + L GV E I ++ + F S+ L + Sbjct: 74 IGDQFDDQIRELDEQTAGSGVDVEEVGDQDAI-LVRLPDGVTFASGSARINSAFYPTLNE 132 Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I E L I + G TD + N +LS RA + L+ GV+ RI Sbjct: 133 IAESLKRYPNSLIDVYGFTDTT---GSDALNQQLSESRAQTVADYLVARGVARSRI-ATQ 188 Query: 314 GFAHHRLK----IASDPMNSANRRIDILVED 340 G+ R A + NRR++I + Sbjct: 189 GYGERREYLRIQTADNVNEPLNRRVEIKITP 219 >gi|315127968|ref|YP_004069971.1| lipoprotein [Pseudoalteromonas sp. SM9913] gi|315016482|gb|ADT69820.1| lipoprotein [Pseudoalteromonas sp. SM9913] Length = 210 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 9/131 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 E R G + ++ + F S L I V+ + +S+ GHTD++ Sbjct: 85 VEVVREGDNLRLV-MPSNITFATDQSYISSGFHDTLNAIASVMNKYEKTYLSVEGHTDST 143 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 N LS RA S L+ + R+ SG+ R +D N + NRR Sbjct: 144 ---GKDSYNMTLSEQRAQSVKNYLVNQQIMAARV-STSGYGESRPIATNDTANGRAQNRR 199 Query: 334 IDI-LVEDRQG 343 ++I +V + QG Sbjct: 200 VEIQIVPNTQG 210 >gi|262281579|ref|ZP_06059357.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202] gi|262256955|gb|EEY75695.1| OmpA/MotB [Acinetobacter calcoaceticus RUH2202] Length = 159 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 ++K F T G + + +FD +++ L ++ L + I Sbjct: 33 KLLKKEGFVLTNEGWTLGL---PERLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKI 89 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD A N +LS +RA S + + G ++ I + G + + + + Sbjct: 90 VGHTDDV---GDAAYNQKLSEERAQSVANLFLARGFKQENIY-VIGRGSTQPYVPNTTNE 145 Query: 327 MNSANRRIDILVED 340 + NRR+ I+V Sbjct: 146 NRAINRRVAIVVIP 159 >gi|260557560|ref|ZP_05829775.1| OmpA/MotB [Acinetobacter baumannii ATCC 19606] gi|260409186|gb|EEX02489.1| OmpA/MotB [Acinetobacter baumannii ATCC 19606] Length = 471 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVASAPETAEQSVSNSLSASQTALTAID-PN 351 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + + + GHT Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 462 NRRIEFSV 469 >gi|193076900|gb|ABO11623.2| OmpA/MotB [Acinetobacter baumannii ATCC 17978] Length = 471 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + + + GHT Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 462 NRRIEFSV 469 >gi|319778099|ref|YP_004134529.1| type IV / vi secretion system protein, dotu family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171818|gb|ADV15355.1| type IV / VI secretion system protein, DotU family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 440 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPF--RNIARD 283 I N +F S ++ + +V+ I++ GHTD+ P N Sbjct: 321 IQASNPELFQSSRPQLTEGFEPLIGSLAKVILANQELIGNITVVGHTDSVPLQKTNPLST 380 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 N RLS RA + +L+++GV DR+ G A + NRR+++LVE R Sbjct: 381 NQRLSEARAQTIADMLVQNGVPRDRVHS-EGRAATDPVATDSTREGRALNRRVEVLVEKR 439 >gi|325105621|ref|YP_004275275.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324974469|gb|ADY53453.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 230 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 19/152 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ AK+I + + G E G I I+ + +FD + + Sbjct: 80 KKMDKQAKEIEAAIPGA-----------EVIPAGEGI-IVKFDSGLLFDFNKATLSATAK 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + + L + I + GHTDA A +N +LSL+RA S + GVS R Sbjct: 128 QNIDNLAASLNKYPDTDILVVGHTDA--IGTDAVNN-KLSLERANSVVSYAISKGVSSGR 184 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + SG ++D + NRR++I++ Sbjct: 185 LKS-SGKGKTEPIASNDTDAGRAQNRRVEIVI 215 >gi|332969616|gb|EGK08634.1| OmpA family protein [Kingella kingae ATCC 23330] Length = 258 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + E R G I + N F P L + LA E I+I Sbjct: 123 EQLANTGVEVERQGNQIKLTMPENVT-FATGRYDLSPAAQSALANAAQTLATYNETTITI 181 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 GHTD++ I LS +RA + L + GV+ +R+ +SG + ++D Sbjct: 182 VGHTDSTGSDAINNP---LSYNRANAVASYLNQRGVAANRM-SVSGQGSRQPIADNSTDY 237 Query: 327 MNSANRRIDILV 338 + NRR++IL+ Sbjct: 238 GRAQNRRVEILI 249 >gi|184157492|ref|YP_001845831.1| outer membrane protein [Acinetobacter baumannii ACICU] gi|332872459|ref|ZP_08440430.1| OmpA family protein [Acinetobacter baumannii 6014059] gi|183209086|gb|ACC56484.1| Outer membrane protein [Acinetobacter baumannii ACICU] gi|332739345|gb|EGJ70201.1| OmpA family protein [Acinetobacter baumannii 6014059] Length = 471 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + + + GHT Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 462 NRRIEFSV 469 >gi|347161|gb|AAC36903.1| protein F [Pseudomonas tolaasii] Length = 317 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 218 FDFDKSVVKPNSYGDVKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+K G++ +R+S + G+ R A++ + NRR++ Sbjct: 275 KQVLVKDGIAPNRVSSV-GYGKSRPVADNATEAGRAINRRVE 315 >gi|58040218|ref|YP_192182.1| Outer membrane protein [Gluconobacter oxydans 621H] gi|58002632|gb|AAW61526.1| Outer membrane protein [Gluconobacter oxydans 621H] Length = 379 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD S ++ + + H T I + G+TD A P + N LS R Sbjct: 271 FFDWDKSDLTGRAREIVAQAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNLGLSNRR 330 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 A S L++ GV I I G+ + + + P NRR++I+++ Sbjct: 331 ASSVKAELIRDGVPAAAID-IHGYGESKPLVPTGPNTREPQNRRVEIILK 379 >gi|239503512|ref|ZP_04662822.1| OmpA family protein [Acinetobacter baumannii AB900] Length = 471 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 293 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 351 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + + + GHT Sbjct: 352 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 405 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 406 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 461 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 462 NRRIEFSV 469 >gi|162451106|ref|YP_001613473.1| hypothetical protein sce2834 [Sorangium cellulosum 'So ce 56'] gi|161161688|emb|CAN92993.1| putative membrane protein [Sorangium cellulosum 'So ce 56'] Length = 634 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 76/258 (29%), Gaps = 8/258 (3%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P R + +N ++ + L Sbjct: 381 PGARDACPYAHGPASADAKRNGCPVEDEDEDGVADQDDLCPRAAAGPGGGDPSRRGCPAD 440 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 +D + D + EK + + L D A Sbjct: 441 QDGDGLPDALDACPAEKGDAAGGATRPGCPPAPRQPTDQDGDGLPDDADACPREKGPASG 500 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVI 266 D G G I +++ + + P++ VL ++ +V+ I Sbjct: 501 DARASGCPTRVRVQGEQIVLLEPVVFRVLKNDPAPIDPKSEAVLAEVRDVIEQHPEWVKI 560 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IAS 324 + HTD AR N L+ RA + + L+ G++ +R+ G+ + S Sbjct: 561 EVSAHTDG---AGNARFNETLTTARAEAVRRWLVGKGIAAERLVA-KGYGASQPISDDRS 616 Query: 325 DPMNSANRRIDILVEDRQ 342 NRR+ +LV +++ Sbjct: 617 AAGREKNRRVQLLVLEKR 634 >gi|150025962|ref|YP_001296788.1| OmpA family outer membrane protein [Flavobacterium psychrophilum JIP02/86] gi|149772503|emb|CAL43986.1| Probable outer membrane protein, OmpA family [Flavobacterium psychrophilum JIP02/86] Length = 710 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 12/142 (8%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 T+ G + +N V + + + D T +F+ S S T VLQ I +L Sbjct: 578 TVKGTIKNNGCPEVTADVMKK-----LNDYAKTILFEVSKSSFQQRTFPVLQSILAILKE 632 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 SI GHTD+ N LS RA + L+K+G+ R++ GF + Sbjct: 633 YPVAKFSIEGHTDSD---GKDTANQTLSETRAAAVMAYLVKNGIDASRLAS-KGFGESKP 688 Query: 321 KIASDPMNSA--NRRIDILVED 340 + NRR+++ + + Sbjct: 689 IATNKTKVGKILNRRVEVKLVN 710 >gi|119897129|ref|YP_932342.1| outer membrane protein [Azoarcus sp. BH72] gi|119669542|emb|CAL93455.1| conserved hypothetical outer membrane protein [Azoarcus sp. BH72] Length = 224 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 16/152 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+Q ++ +G GV T + + D + FD PE Sbjct: 79 QRMQAQKAEMERATAGT-------GVSVSQTADN-RLKL-DIPSDVSFDTGRYDIKPEMR 129 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL + L T +SI GHTD++ + LS++RA + L+ GV+ R Sbjct: 130 PVLDRFANTLNQHTVTTVSIIGHTDSTGSDAVNNP---LSVNRAAATRDYLVARGVAGSR 186 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I I G + + NRR++I V Sbjct: 187 I-AIDGRGAREPIADNGTVAGRAQNRRVEIFV 217 >gi|298206796|ref|YP_003714975.1| OmpA family protein [Croceibacter atlanticus HTCC2559] gi|83849428|gb|EAP87296.1| OmpA family protein [Croceibacter atlanticus HTCC2559] Length = 630 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 15/141 (10%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 + ++ + T I + T FD + P+ VL K +++ + VI+ Sbjct: 497 ERAKDMIVVDETTKQEKIDL----ETIYFDFDKADITPKAAAVLDKAVKLMNFYPDMVIN 552 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---- 323 I HTD+ R + N+ LS RA + Q + G++E+RI G+ RL Sbjct: 553 IESHTDS---RGSKKYNYSLSDRRAKATQQYIYSQGIAEERIVSAQGYGEQRLLNECKDG 609 Query: 324 ---SDPMNSANRRIDILVEDR 341 SD + NRR D ++ R Sbjct: 610 VKCSDEEHDVNRRSDFIILKR 630 >gi|253582159|ref|ZP_04859382.1| outer membrane protein OmpF [Fusobacterium varium ATCC 27725] gi|251835698|gb|EES64236.1| outer membrane protein OmpF [Fusobacterium varium ATCC 27725] Length = 186 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 11/166 (6%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 KE ++ + + + TL ++ N KGV +++S+ +FD Sbjct: 28 KELVIEETENEFIMEDIDVSKKTLEEIIVFN-EKGVTIRREGNNLVLSM---PELVLFDF 83 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + + L + + L + + I I G+TD F N LS+ RA + Sbjct: 84 NKYEVKNKVKGSLNALAKALEENPDIRIKIDGYTD---FIGSEGYNLELSVKRANAIKDY 140 Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 L GV I I G+ ++ + + NRR++ ++ + Sbjct: 141 LTNRGVKPSNI-SIEGYGKQNPIASNQTETGRAKNRRVEFIISRDK 185 >gi|298372474|ref|ZP_06982464.1| OmpA family outer membrane protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275378|gb|EFI16929.1| OmpA family outer membrane protein [Bacteroidetes oral taxon 274 str. F0058] Length = 633 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + ++ V + ++G I++ N F +S P++ + ++ L + Sbjct: 503 AKIITSKNTLNVYLQPIKSGNKITL----NNIFFAFNSYELEPKSEREIMQLYSFLRKNP 558 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +V I I GHTD N LS +RA + L++ G+ R+ G + Sbjct: 559 DVSIEIVGHTDNI---GGENFNQTLSENRALAVMMALIEKGIDAGRLY-YRGMGLSQPIA 614 Query: 323 ASDPMNSA--NRRIDILVE 339 +++ NRR++ +++ Sbjct: 615 SNNTEEGREKNRRVEFVIK 633 >gi|94263332|ref|ZP_01287147.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456287|gb|EAT06417.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 272 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 52/207 (25%) Query: 179 SKEKILAMKRKKRLQDLAK--KISSTLSGL--VADNIVKGVLFETTRTGILIS------- 227 K K ++R++ L++ + I L+ + V D++++ + + + G+ + Sbjct: 47 QKSKQAEIERQELLREQKRYSLIVDDLTNIGHVRDSLLEDIGSKLRQLGVQVETDLEHGI 106 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---------------------EVI 266 + F +I E + L K+G+VL + E + Sbjct: 107 VHLTEQAINFPSGQAILPEEELAKLAKVGDVLVDTLPCYTADPPAYLNCSPEHAGKLESV 166 Query: 267 SIRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLM------------KSGVSEDRISK 311 I GHTD P R+ +R DNW LS RA AY+ ++ +G I Sbjct: 167 FIEGHTDNVPLRDGSRKFQDNWDLSAQRAIFAYRSMVIGEQPLLGQLTNTAGFP---IFS 223 Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDI 336 +SG+ R + + ++ANRRID+ Sbjct: 224 VSGYGEGRPRNRYEAPTADAANRRIDL 250 >gi|254524462|ref|ZP_05136517.1| outer membrane protein [Stenotrophomonas sp. SKA14] gi|219722053|gb|EED40578.1| outer membrane protein [Stenotrophomonas sp. SKA14] Length = 231 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I + + FD + P+ L + L + +I + GHT Sbjct: 104 NTGIDVQRQGDNIMLN-LPDGITFDFGKATLKPQFYGSLNGVAGTLRDYNQTMIEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ + A +N RLS +RA S Q L+ GV RI + +G ++ ++D + N Sbjct: 163 DS--IGSDAVNN-RLSKERADSVAQYLIGQGVQSVRIETLGAGKSYPIADNSTDAGRAKN 219 Query: 332 RRIDILVEDRQ 342 RR++I V + Sbjct: 220 RRVEIRVIPLK 230 >gi|154250728|ref|YP_001411552.1| OmpA/MotB domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154678|gb|ABS61895.1| OmpA/MotB domain protein [Parvibaculum lavamentivorans DS-1] Length = 224 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 8/123 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 TR G I I++ F +SS + VL + VL + I + GHTD++ Sbjct: 99 VSVTRVGNDI-ILNMPGNVTFATNSSDINAKFYDVLNSVAIVLKEYDKTLIDVTGHTDST 157 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 + N LS RA S L+ V R I G + +D NRR Sbjct: 158 ---GSDQYNLELSQKRAQSVASYLIGQSVDSRRFY-IVGAGESQPIATNDTPQGREQNRR 213 Query: 334 IDI 336 ++I Sbjct: 214 VEI 216 >gi|257091687|ref|YP_003165328.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044211|gb|ACV33399.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 202 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P + L +I ++L+ + + I + GHTDA A N LS DRA S Sbjct: 100 FRPGSANITPASGNTLIEIAKILSLTPDRCIIVEGHTDAE---GNADRNMALSRDRANSV 156 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + G E R G DP +S NRR+ Sbjct: 157 VKFISDKGAVERRRLVPVGKGSTDPLKDLDPRDSRNRRV 195 >gi|298208747|ref|YP_003716926.1| OmpA family protein [Croceibacter atlanticus HTCC2559] gi|83848674|gb|EAP86543.1| OmpA family protein [Croceibacter atlanticus HTCC2559] Length = 233 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 17/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ A+KI + G E GI+++ D+ + FD + S ++ Sbjct: 78 NKMDKQAQKIEQEIPGA---------QVERIDDGIVVT-FDENSGVYFDTNKSNINAKSQ 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ VL + + GHTD++ A N LS DRA S G+S R Sbjct: 128 ETLDKLSNVLVEYPNTDVLVVGHTDST---GSAEYNMSLSRDRANSVTNYFTSKGLSSGR 184 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + F + +D + NRR+ + + + Sbjct: 185 FT-TKWFGETKPAYTNDTAEGRAKNRRVQLAILPNE 219 >gi|88798412|ref|ZP_01113997.1| OmpA/MotB [Reinekea sp. MED297] gi|88778852|gb|EAR10042.1| OmpA/MotB [Reinekea sp. MED297] Length = 373 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + V LQ+ L + I I HTD++ + A N LS RA + Sbjct: 255 FAVDSAQLNDTSRVRLQEAANTLRQFPDINIQIEAHTDST--ASEAY-NLSLSDQRAQAI 311 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L++ G+ E R++ +G+ + + +++ NRR++ Sbjct: 312 RDYLIELGIDEQRLTA-TGYGESQPRASNESEEGRSLNRRVE 352 >gi|86609769|ref|YP_478531.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558311|gb|ABD03268.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 243 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 77/228 (33%), Gaps = 13/228 (5%) Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 Q I Q+ S T D++ ++ TDLE I + + L Sbjct: 18 SPTQPASPTPPILPTLAPPQANPPVASPTADADPEENHESPTDLEAEIREIRQQVIQLLI 77 Query: 180 KEKILAMKRKKRLQDLA----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 + + L + ++ A ++ S+ + + T + I Sbjct: 78 RIEELESRLQRLRSQTAPEPVRESSTAAEIVPGEESTPAPTKTLTSFQVGTQTISLPGDL 137 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + PE +L ++ + L + + GHTD N LSL RA + Sbjct: 138 LFDFDKAEIRPEAASLLAQVAKSLEAMPGARVQVNGHTDNI---GPLNYNLALSLRRANA 194 Query: 295 AYQVLMKSGVSEDRISK--ISGFAHHRLKIASDPM--NSANRRIDILV 338 L K + E SGF +D NRR+D+++ Sbjct: 195 VKDYLTKL-LPEGHPISWTTSGFGPTLPVADNDTEAGRQRNRRVDLVI 241 >gi|116748592|ref|YP_845279.1| OmpA/MotB domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697656|gb|ABK16844.1| OmpA/MotB domain protein [Syntrophobacter fumaroxidans MPOB] Length = 182 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ P+ + + EVLA I + G TD + + D+ ++ RA + Sbjct: 78 LFPDDSTELKPDAPARIAPVAEVLAKYPATSIKVDGFTDRT--GSEKYDH-EITESRATA 134 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 VL+ G+ RI + GF + A+D NRR+ I + Sbjct: 135 VRDVLVGKGIDPARI-RARGFGDSKPLTTNATDEGRRTNRRVTITI 179 >gi|221640398|ref|YP_002526660.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161179|gb|ACM02159.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 310 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + + L + I GHTDA N LS RA S Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAVSV 262 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339 + L+ GV +++ G+ R ++ + NRR+++++ Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308 >gi|257453597|ref|ZP_05618887.1| OmpA/MotB [Enhydrobacter aerosaccus SK60] gi|257449055|gb|EEV24008.1| OmpA/MotB [Enhydrobacter aerosaccus SK60] Length = 385 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 13/128 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRN 279 + + + FD ++ + +QK+ E + SI GH AS Sbjct: 255 DDALRMEL-----RVFFDNDKTVIKDQYKPEIQKVAEKMNEYPNSTASIEGH--ASKTGP 307 Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI-D 335 AR N RLS RA + +L+ GV+ RIS + G+ + R ++ + NRR+ Sbjct: 308 SARYNQRLSEARANAVKSMLVNQFGVAPQRISTV-GYGYDRPIADNNTAEGRAMNRRVYA 366 Query: 336 ILVEDRQG 343 I+ ++ G Sbjct: 367 IITGNKSG 374 >gi|260642406|ref|ZP_05415772.2| lipoprotein PG3 [Bacteroides finegoldii DSM 17565] gi|260622249|gb|EEX45120.1| lipoprotein PG3 [Bacteroides finegoldii DSM 17565] Length = 260 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 88 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLKAVKVTFDSGI-----------LFT 136 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDR 291 ++ P L K VL + + +SI G+TD +RN + N LS +R Sbjct: 137 TGNASLSPAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSRQKNLNLSQER 196 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 197 AQSVASYLLNCGVSSNQIKGVQGMGESDPVASNDTAAGREQNRRVEV 243 >gi|296534445|ref|ZP_06896882.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957] gi|296265230|gb|EFH11418.1| chemotaxis protein MotB [Roseomonas cervicalis ATCC 49957] Length = 143 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Query: 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKA 64 +++ I+++++ D ++ G+WKI YADF+T +MAFFL+MW+INAT D + Sbjct: 2 AKRDKNQRTVIVVRREEGGGDGGHHGGAWKIAYADFVTAMMAFFLLMWLINATSDAQRVG 61 Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 + YF P L G + +S N + + + + + + + Sbjct: 62 LADYFAPTNV-LSRGPSGAGEPFGGRTINSTNTLAGETPPAMGERPMSPLPWTREDRPED 120 Query: 125 QRLENNIFYLSN 136 + + Sbjct: 121 EPDDPPAEPQPP 132 >gi|326561460|gb|EGE11810.1| outer membrane protein CD [Moraxella catarrhalis 46P47B1] gi|326562231|gb|EGE12559.1| outer membrane protein CD [Moraxella catarrhalis 7169] gi|326567185|gb|EGE17307.1| outer membrane protein CD [Moraxella catarrhalis BC1] gi|326568467|gb|EGE18547.1| outer membrane protein CD [Moraxella catarrhalis BC7] gi|326572021|gb|EGE22023.1| outer membrane protein CD [Moraxella catarrhalis BC8] gi|326574959|gb|EGE24889.1| outer membrane protein CD [Moraxella catarrhalis 101P30B1] Length = 453 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 L+ + Q FD SI P+ + K+ + +I GH R+ AR Sbjct: 320 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 379 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 N RLS RA + +L G++ +R++ + G+ R + + NRR++ ++ Sbjct: 380 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 436 >gi|126463345|ref|YP_001044459.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105009|gb|ABN77687.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 310 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + + L + I GHTDA N LS RA S Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAVSV 262 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339 + L+ GV +++ G+ R ++ + NRR+++++ Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308 >gi|77464505|ref|YP_354009.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1] gi|77388923|gb|ABA80108.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1] Length = 310 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + + L + I GHTDA N LS RA S Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAVSV 262 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339 + L+ GV +++ G+ R ++ + NRR+++++ Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308 >gi|222054259|ref|YP_002536621.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221563548|gb|ACM19520.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 242 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E R G + + + +FD L K L S I ++GHTD++ Sbjct: 111 EVVRDGDKV-YVALPSGILFDLGKDALKSGAKESLSKAAATLKASETNIVVQGHTDST-- 167 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA L +GV R++ + G+ R +A+D + NRR+ Sbjct: 168 -GSDAINQPLSERRAKQVRDFLTANGVPAFRLTAV-GYGSSRPAVANDTDANRALNRRVQ 225 Query: 336 ILVEDRQ 342 + + + Sbjct: 226 LEISPNE 232 >gi|217032506|ref|ZP_03437997.1| hypothetical protein HPB128_180g5 [Helicobacter pylori B128] gi|216945784|gb|EEC24407.1| hypothetical protein HPB128_180g5 [Helicobacter pylori B128] Length = 247 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 72/158 (45%), Gaps = 13/158 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 +++ S + +D N R++I +R Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIFFSNR 235 Score = 49.5 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|146279022|ref|YP_001169181.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557263|gb|ABP71876.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 316 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ T L ++ E L + I GHTDA N LS RA S Sbjct: 212 FASGSADLEDRTYPALAELAEWLKQDPARQVVIVGHTDA---SGGLEGNVSLSRARAASV 268 Query: 296 YQVLM-KSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339 Q L+ + GV + ++S G+ R ++ S NRR+++++ Sbjct: 269 RQRLVSRHGVPDAQVSAEGVGYLAPRASNRTEEGRSRNRRVEVMLL 314 >gi|296113910|ref|YP_003627848.1| outer membrane protein CD [Moraxella catarrhalis RH4] gi|149757|gb|AAA66180.1| outer membrane protein CD [Moraxella catarrhalis] gi|45685720|gb|AAS75593.1| OmpCD [Moraxella catarrhalis O35E] gi|295921604|gb|ADG61955.1| outer membrane protein CD [Moraxella catarrhalis RH4] gi|326560587|gb|EGE10968.1| outer membrane protein CD [Moraxella catarrhalis 103P14B1] gi|326573968|gb|EGE23918.1| outer membrane protein CD [Moraxella catarrhalis O35E] Length = 453 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 L+ + Q FD SI P+ + K+ + +I GH R+ AR Sbjct: 320 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 379 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 N RLS RA + +L G++ +R++ + G+ R + + NRR++ ++ Sbjct: 380 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 436 >gi|255033902|ref|YP_003084523.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254946658|gb|ACT91358.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 638 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 N F I ++ V L K+ + L + T I I GHTD +N LS R Sbjct: 533 NNIFFKTGEYILDDKSKVELDKMSDFLHKNKTIKIEISGHTDDV---GSDTENMALSQRR 589 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 A S L +SG++ DRI G+ K + D NRRI+ Sbjct: 590 AQSVQYYLQQSGIAADRILA-KGYGETTPKAPNDSDENRQKNRRIE 634 >gi|118419991|gb|ABK88265.1| outer membrane protein CD [Moraxella catarrhalis] Length = 427 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 L+ + Q FD SI P+ + K+ + +I GH R+ AR Sbjct: 294 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 353 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 N RLS RA + +L G++ +R++ + G+ R + + NRR++ ++ Sbjct: 354 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 410 >gi|326576289|gb|EGE26204.1| outer membrane protein CD [Moraxella catarrhalis CO72] Length = 453 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 L+ + Q FD SI P+ + K+ + +I GH R+ AR Sbjct: 320 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 379 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 N RLS RA + +L G++ +R++ + G+ R + + NRR++ ++ Sbjct: 380 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 436 >gi|229592593|ref|YP_002874712.1| putative lipoprotein [Pseudomonas fluorescens SBW25] gi|229364459|emb|CAY52284.1| putative putative lipoprotein [Pseudomonas fluorescens SBW25] Length = 163 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K FE T G +F + ++Q+IG+ L E + I Sbjct: 37 VLKQQGFELTDEGWA---FGLSGKVLFGSDVEALNQPSTDIVQRIGKALLGVGIERVRID 93 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA N +LSL RA S VLM G+ E+ I ++ G ++D Sbjct: 94 GHTDA---SGKETYNQQLSLRRAKSVATVLMSVGMKEENI-QLRGLGSSEPVASNDTAAG 149 Query: 330 A--NRRIDILVED 340 NRR+ I+V Sbjct: 150 RTENRRVSIVVMS 162 >gi|326565587|gb|EGE15750.1| outer membrane protein CD [Moraxella catarrhalis 12P80B1] Length = 449 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 L+ + Q FD SI P+ + K+ + +I GH R+ AR Sbjct: 316 LVEELRQELRVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY 375 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 N RLS RA + +L G++ +R++ + G+ R + + NRR++ ++ Sbjct: 376 NQRLSEARANAVKSMLSNEFGIAPNRLNAV-GYGFDRPIAPNTTAEGKAMNRRVEAVI 432 >gi|162456349|ref|YP_001618716.1| exported OmpA domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161166931|emb|CAN98236.1| exported OmpA domain protein [Sorangium cellulosum 'So ce 56'] Length = 610 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 87/307 (28%), Gaps = 24/307 (7%) Query: 39 DFMTVLMAFFLVMWIINATDDDTKKAIEQYFN--PFGKNLMTASKGIFDEQNPPERSSQN 96 D V MA F D + I + P + + PP+R + Sbjct: 296 DVRAVAMAAF----TPEQPTDQDRDGIGDLEDACPSVPGVRSGDPKKNGCPPPPDRDADG 351 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS---QQSEHCKNSLTRDSEK 153 +D R + I ++ + Sbjct: 352 IVDAEDACPAVAGVRSDDPKKNGCPPPPDRDADGIVDAEDACPAVAGVRSDDPKKNGCPP 411 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--ISSTLSGLVADNI 211 +D D E + + +K +D + + Sbjct: 412 DRDDDGVADAEDACPDVKGVRSKDPAKNGCPRDTDGDTFRDDVDACPREKGFADPDPEKN 471 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIR 269 T ++I FD + P + +L ++ EVL +I I+ Sbjct: 472 GCPKAVRVTEKHVVIL-----QQVQFDTDKATIKPVSDPLLDEVAEVLKEHPEIVLIEIQ 526 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM 327 GHTD R N LS +RA S L++ G+ R++ G+ + A++ Sbjct: 527 GHTDN---RGTVEHNRILSQNRANSVMAALVRRGIDSTRLTA-QGYGREQPIDDNATEAG 582 Query: 328 NSANRRI 334 NRR+ Sbjct: 583 RQRNRRV 589 >gi|300697371|ref|YP_003748032.1| outer membrane protein; OmpA/MotB domain [Ralstonia solanacearum CFBP2957] gi|299074095|emb|CBJ53637.1| putative outer membrane protein; OmpA/MotB domain [Ralstonia solanacearum CFBP2957] Length = 279 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 19/254 (7%) Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + S+ + + + R + + + + + Sbjct: 34 GAPGDPAPATAANSVPGQVVAGGMVPDEATKASVLARLRELYGSANVVDQIEVGNVVSPP 93 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS--- 204 K L + + + +R++ D+A + ++ + Sbjct: 94 NWTGNVQKILSPQIKQVNRGQLNIDGTQVAVHGDVQNEAQRQQLASDMATTLGASYTIKN 153 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 GL + + L + T +I F+ S+ P+ +L ++ VL Sbjct: 154 GLRVAAVSEQSLLDQTLANRIIE---------FETGSATLTPKGRGILDEMAAVLPRLNG 204 Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I I GHTD N LS RA + L+ G ++ I G + A Sbjct: 205 RKIEIVGHTDN---SGSRAMNLNLSQARAETVKSYLINKGAEPGTLTAI-GVGPDQPVAA 260 Query: 324 S--DPMNSANRRID 335 + D S NRRI+ Sbjct: 261 NTTDEGRSRNRRIE 274 >gi|294012887|ref|YP_003546347.1| OmpA-family protein [Sphingobium japonicum UT26S] gi|292676217|dbj|BAI97735.1| OmpA-family protein [Sphingobium japonicum UT26S] Length = 226 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 15/162 (9%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDK 239 + +K L ++ G D + + ET +G+ + I D N + F Sbjct: 60 RTEKILGAGIGAVAGAGIGAYMDAQERKLREETAGSGVDV-IRDGDNLVLRMPSGITFAT 118 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 SS P+ L + VLA + I + GHTD+ N LS RA + Sbjct: 119 DSSAVQPQFQPTLNDVASVLAQYPKTYIDVYGHTDS---DGTDTYNQALSERRAQAVGDY 175 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 L GV RI GF + ++ ++NRR++I + Sbjct: 176 LTTHGVQSARI-ATRGFGETQPIASNATAEGKASNRRVEIKI 216 >gi|146306455|ref|YP_001186920.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145574656|gb|ABP84188.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 244 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275 E +I + D N +F S+ E +L + L ++ + + GHTD+ Sbjct: 123 MEPVAQDEVIVLSDLGN-VLFAFDSAELTAEARRLLTDVSARLTGASLVSVKVVGHTDSV 181 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRR 333 N LS RA S L+ GV ++ G + + D + NRR Sbjct: 182 ---GSDAYNQGLSERRARSVADFLVAQGVPAGKL-STEGRGESQPVADNGSDAGRAQNRR 237 Query: 334 IDILV 338 +++ V Sbjct: 238 VELYV 242 >gi|193076988|gb|ABO11733.2| putative outer membrane lipoprotein [Acinetobacter baumannii ATCC 17978] Length = 255 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S++ +L ++ L + I GHTD+ A N +LS DRA + Sbjct: 154 FESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDS---SGDANKNLKLSQDRALAV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 L+ + D + G + + NRRI+ V Sbjct: 211 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255 >gi|254302309|ref|ZP_04969667.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322501|gb|EDK87751.1| OmpA family outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 189 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ FD S PE +L+ I E + + I+I GHTD+ + A N++ Sbjct: 60 TIVLDERALNFDFDKSNVKPEYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 116 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G++EDRI I + ++ + NRR++ + R+ Sbjct: 117 LSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRE 174 >gi|83748126|ref|ZP_00945154.1| Hypothetical Protein RRSL_01752 [Ralstonia solanacearum UW551] gi|207739125|ref|YP_002257518.1| outer membrane protein [Ralstonia solanacearum IPO1609] gi|83725208|gb|EAP72358.1| Hypothetical Protein RRSL_01752 [Ralstonia solanacearum UW551] gi|206592498|emb|CAQ59404.1| outer membrane protein [Ralstonia solanacearum IPO1609] Length = 277 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 10/277 (3%) Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 AI+ F P L + + + + + + + K Sbjct: 3 LDAIKHGFRPAILALAATAACLGAALPAYGAPGDPALATTANPVPGQVVAGGMVPDEATK 62 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 ++ +N N ++ + G + K +N+ + Sbjct: 63 ASVLARLRELYGSANVVDQIEVGNVVSPPNWTGNVQKILSPQIKQVNRGQLNIDGTQVAV 122 Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 +R Q LA +++TL I G+ L+ F+ S Sbjct: 123 HGDVQNEAQR-QQLASDMATTLGASYT--IKNGLRVAAVSEQSLLDQTLANRIIEFETGS 179 Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P+ +L ++ VL I I GHTD N LS RA + L+ Sbjct: 180 ATLTPKGRGILDEMAAVLPRLNGRKIEIVGHTDN---SGSRAMNLNLSQARAETVKSYLI 236 Query: 301 KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 G ++ I G + A+ D S NRRI+ Sbjct: 237 NKGAEPGTLTAI-GVGPDQPVAANTTDEGRSRNRRIE 272 >gi|332668211|ref|YP_004450999.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337025|gb|AEE54126.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 317 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + GI I ++ + F+ S + +L +L ++ E I GHTD Sbjct: 197 IQQDGEGIKIRFSEKVS---FETGKSELVAAADSILAITVRMLNYNPEAKCRIEGHTDDV 253 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 A+DN LS RA + L G+ ++ G+ + ++ NRR Sbjct: 254 ---GNAKDNLLLSQSRAKAVATALKNRGIPTSVQLEVKGYGSTKPVASNSSAEGKSLNRR 310 Query: 334 IDILVE 339 +DI++E Sbjct: 311 VDIVIE 316 >gi|237738475|ref|ZP_04568956.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817] gi|229420355|gb|EEO35402.1| outer membrane porin F [Fusobacterium mortiferum ATCC 9817] Length = 185 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 11/166 (6%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 KE + + + + L ++ N +GV+ +++S+ +FD Sbjct: 25 KEITIKESETQYILEDVTTTEKPLEDIIVFN-EEGVVIRKDGNNLVLSM---PVEILFDF 80 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 SS L +G+ LA + + + I GHTD + + N LSL RA S Sbjct: 81 DSSKVKEGVKESLNTLGKALAENKDIKLKIDGHTD---YIGTEQYNLNLSLKRANSIKNY 137 Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 L+ GVS + I I G+ + + + NRR++ ++ + Sbjct: 138 LIGRGVSANNI-SIEGYGKQNPVANNSTEAGRAKNRRVEFIISRDK 182 >gi|311747916|ref|ZP_07721701.1| OmpA family protein [Algoriphagus sp. PR1] gi|126575910|gb|EAZ80220.1| OmpA family protein [Algoriphagus sp. PR1] Length = 225 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + ++ L D ++G E GI I+ + MFD + + L + Sbjct: 70 IGNEMDKAAEELQRD--LEGATVERVGEGIKITF---DSGLMFDVDKATLNSNSRDNLME 124 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + E L E I + GHTDA+ N LS RAYS L G+ + R+ I+ Sbjct: 125 LSETLKKYDETNILVEGHTDAT---GSDDYNLDLSRKRAYSVEDYLTNLGIQKSRLE-IT 180 Query: 314 GFAHHRLKIASDPMNSA--NRRIDILV 338 + ++ ++ NRR+++ + Sbjct: 181 AYGENQPIATNETEAGRQQNRRVEVAI 207 >gi|27804808|gb|AAO22853.1| outer membrane protein A-like protein [Myxococcus xanthus] Length = 241 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 13/131 (9%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273 L E +++ F+ + + + +L + V+ E+ + + HTD Sbjct: 111 LVEIRPDRLVV-----MGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTD 165 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 R DN RLS RA + Q L+ ++ +R+ + G+ R ++ N N Sbjct: 166 D---RGFPDDNRRLSQGRAEAVRQYLIGRDIAPERLKAL-GYGQERPIDSNATSNGRENN 221 Query: 332 RRIDILVEDRQ 342 RR++ L+ D Q Sbjct: 222 RRVEFLLADPQ 232 >gi|77457447|ref|YP_346952.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77381450|gb|ABA72963.1| putative outer membrane protein A precursor [Pseudomonas fluorescens Pf0-1] Length = 231 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARD 283 I I D F + P +VL K+ L ST +++ GHTD+ Sbjct: 120 IVIRDVH----FQFDKATLTPADKLVLDKVASRLKQESSTAQLTVTGHTDSV---GSDAY 172 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N +LS RA+S + L++SGV + ++G + + + NRR +I + Sbjct: 173 NQKLSDRRAHSVVKYLVESGVPQSSFVSVTGAGESQPVADNKTADGRALNRRTEIKI 229 >gi|327396585|dbj|BAK14006.1| putative OmpA-family membrane protein [Pantoea ananatis AJ13355] Length = 353 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +I+ + +FD S T +++ + + A +I + GHTD + + N Sbjct: 214 TIVRLDSMSLFDSGKSALKDGSTKMLVNSLVGIKAKPGWLIIVSGHTDNT---GNPQLNQ 270 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA + + +G + + G+ R A+ + NRR++I + + Sbjct: 271 ALSLKRAEAVRNWMRDTGGVPESCFAVQGYGESRPVAANGTPEGRALNRRVEISLVPQ 328 >gi|325300740|ref|YP_004260656.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324320293|gb|ADY38183.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170] Length = 209 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 8/160 (5%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + +K++ + + KK+ + L + + T G I +N +F S Sbjct: 53 AELIKKEQEKAINKKLLERENKLKNIPGLVVTTIDET-NGKKIFKATMQNEILFKFDSHE 111 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +L ++ ++ I + GHTD N LS +RA + L + Sbjct: 112 LNKNAKSILDEMIGIINEIPNTKIKVIGHTDN--IGEKGY-NILLSQNRAAAVGNYLRNA 168 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 G+ I++ G ++ + NRR++I + + Sbjct: 169 GIETKNITE-EGKGFDEPVSSNKTEAGRAKNRRVEIFLSN 207 >gi|269119617|ref|YP_003307794.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] gi|268613495|gb|ACZ07863.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] Length = 179 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 11/155 (7%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++++ +I++ V + + + + I N FD S PE Sbjct: 24 KQMRNDTIRINALEVEFVEEKAAVQEVKQNGSGEVKKIIRLNENKLYFDFDDSRIKPEYY 83 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L+++ E + + IRG+TD+ +N RLS RA S L++ G+ R+ Sbjct: 84 GLLREMVEEIKAMDSDVIIRGYTDSK--GTDEYNN-RLSQRRAESVRDKLIEFGLESGRV 140 Query: 310 SKISGFAHHRLKIAS-------DP-MNSANRRIDI 336 K G + +P + NRRI++ Sbjct: 141 LKTEGMGERNPIAPNTNKDGSDNPAGRALNRRIEL 175 >gi|325954634|ref|YP_004238294.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323437252|gb|ADX67716.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 234 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 15/155 (9%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + A+KI L G T GI + I+++ ++ FD +S + Sbjct: 81 QHMDKQAEKIEQVLPGA---------EVVRTDEGINL-ILNENSSVTFDYNSENLTSKAK 130 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ +V + + I GHTD N LS RA S L+ G+S R Sbjct: 131 NSLDKLIQVFKEYPDTNLLIVGHTDNV---GSQNFNLPLSEKRAKSVVNYLVSKGISSSR 187 Query: 309 I-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + SK G + ++ + NRR++I + + Sbjct: 188 LTSKGVGLSEPIADNSTAAGRAQNRRVEIAITANE 222 >gi|238023632|ref|YP_002907864.1| outer membrane protein [Burkholderia glumae BGR1] gi|237878297|gb|ACR30629.1| Outer membrane protein [Burkholderia glumae BGR1] Length = 569 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 17/183 (9%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 +++ + ++ ++ + R +L + + + + + +G + Sbjct: 384 ALDAYRDTPALDIAAKRAAVGALRARFAELERYANQGVPTGLGWGLYRGAPL---HEAVR 440 Query: 226 ISI--------IDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASP 276 +I + +FD + + I L+ +G +LA+ + + I GHTD Sbjct: 441 RAIASWRPASGVTLDQLSLFDSGRATLKRDAIPKLRNVLGRILANRDQRVLIAGHTDDV- 499 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 N +LS RA + ++ G I + R + + NRR+ Sbjct: 500 --GSPEANLKLSQARALAIRDWFVRVGALPVTRFAIQAYGDTRPIADNLTPQGRAMNRRV 557 Query: 335 DIL 337 +IL Sbjct: 558 EIL 560 >gi|169633170|ref|YP_001706906.1| hypothetical protein ABSDF1479 [Acinetobacter baumannii SDF] gi|169151962|emb|CAP00823.1| conserved hypothetical protein; putative bacterial outer membrane domain [Acinetobacter baumannii] Length = 471 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 17/225 (7%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 T+Q + + SL +K +++ + +P Sbjct: 259 DTSQTYAAAFTDKDALAGVLGALKGIPNASLEWVGDKITLKAGDAAALEALTAKVKALVP 318 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 ++ + + + L+ + +N+ + L + + + II+ Sbjct: 319 HTEVVATAPETAEQSVSNSLSASQTALTAIDPNNVDENALVK----ALNLQIIN------ 368 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS + +L + +L + + + GHTD++ A N LS RA + Sbjct: 369 FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHTDST---GNAAANKALSQRRAQAV 425 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L+ GV ++ G + + NRRI+ V Sbjct: 426 VDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFKNRRIEFSV 469 >gi|213963452|ref|ZP_03391706.1| OmpA family protein [Capnocytophaga sputigena Capno] gi|213953860|gb|EEB65188.1| OmpA family protein [Capnocytophaga sputigena Capno] Length = 454 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 34/288 (11%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE------------HITKNSVDL 113 E YF + K D+ ++ D E ++ Sbjct: 180 EDYFQHAAGITIKFGKKDRDKDGVADKDDACPDDPGKKELNGCPDRDNDGVADKDDACPD 239 Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE-KGKDLCKSTDL-EKSINKEE 171 + G K R + I ++ E K + G + + D + +E Sbjct: 240 EAGLPELKGCPDRDGDGIADKDDACPDEAGKPEFNGCPDTDGDGVADNVDQCKDVAGPKE 299 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 N P + + + A E T+ + + Sbjct: 300 NNGCPWPDTDGDGVLDKDDE------------CPEEAGPASNNGCPEVTQE-VQTQLNSF 346 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 T +FD + + PE+ VL I VL SI G+TD N +LS D Sbjct: 347 AKTILFDVNKATIRPESATVLNNIVNVLNKYKNAKFSIEGYTDT---SGNKAKNQKLSED 403 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 RAYS L+ G+ + R++ GF + ++ NRR++I Sbjct: 404 RAYSVKAYLIDKGIDQARLTA-KGFGPEKPIASNKTKKGRELNRRVEI 450 >gi|51245063|ref|YP_064947.1| outer membrane porin F [precursor] [Desulfotalea psychrophila LSv54] gi|50876100|emb|CAG35940.1| related to outer membrane porin F [Precursor] [Desulfotalea psychrophila LSv54] Length = 241 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 9/107 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ +L ++ L + I+GHTD+ N +LS RA Sbjct: 133 FDLNSARLRRSAYPLLAELARALEDERVVEHQVCIKGHTDS---AGAGSYNLQLSYSRAN 189 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + L +G+S D++ + G+ + + + + NRR+++ + Sbjct: 190 AVRDYLAGAGMSVDKLE-VFGYGENMPLVTNSSEANRQLNRRVEVSL 235 >gi|254454298|ref|ZP_05067735.1| OmpA family domain protein [Octadecabacter antarcticus 238] gi|198268704|gb|EDY92974.1| OmpA family domain protein [Octadecabacter antarcticus 238] Length = 219 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + T + +++++ +FD S+ L + + + Sbjct: 85 EAELRQQMGSNAQIVNTGSQLIVTL---PQDILFDTGSAALSGGLRSDLNALAASMNNFP 141 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +++ GHTD+ A N LS RA + VL++SGVS +RI I G Sbjct: 142 NSTVNVIGHTDSD---GTAAFNQDLSARRAQAVSSVLIQSGVSANRIRSI-GRGEDAPIA 197 Query: 323 A--SDPMNSANRRIDILVED 340 + + NRR++I + Sbjct: 198 SNLNAEGKRQNRRVEITITP 217 >gi|254438169|ref|ZP_05051663.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198253615|gb|EDY77929.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 220 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + T + +++++ +FD SS L + + Sbjct: 86 EAELRQEMGSSAQIVNTGSQLIVTL---PQDILFDTGSSALTGGLRNDLNTLAGSMNRFP 142 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +++ GHTD + A N LS RA + VL++SGV+ +RI I G Sbjct: 143 NSTVNVIGHTD---WDGSAAFNQDLSARRAQAVSAVLIQSGVAPNRIRSI-GRGEDAPIA 198 Query: 323 A--SDPMNSANRRIDILVED 340 ++ NRR++I + Sbjct: 199 TNLNEEGKRQNRRVEITITP 218 >gi|150024266|ref|YP_001295092.1| OmpA family outer membrane protein P60 [Flavobacterium psychrophilum JIP02/86] gi|113927364|emb|CAL07968.2| outer membrane protein A [Flavobacterium psychrophilum JIP02/86] gi|149770807|emb|CAL42272.1| Outer membrane protein OmpA family P60 [Flavobacterium psychrophilum JIP02/86] Length = 465 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST- 263 V + E + I + D T +FD + +T+ +L + +L Sbjct: 332 PTVKGTVANNGCPEVSEEAIK-KLNDYAKTILFDNAKFTFQKQTLPILDAMVAILNEFPT 390 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 SI G+TD N LS +RA + L+ G+S DR++ I G+ + Sbjct: 391 SKFSIEGNTDN---SGKKATNQTLSENRAKAVADFLISKGISSDRLTSI-GYGDSMPIAS 446 Query: 324 SDPMN--SANRRIDILV 338 + + NRR+++ V Sbjct: 447 NKTKAGKAQNRRVEVKV 463 >gi|108761081|ref|YP_635504.1| OmpA family protein [Myxococcus xanthus DK 1622] gi|108464961|gb|ABF90146.1| OmpA family protein [Myxococcus xanthus DK 1622] Length = 352 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLD 290 F ++ P L + +VL VI+I GHTD ++ R ++L Sbjct: 240 ERITFAPGTAALQPRVQPALDNVADVLLVHPRLGVIAIEGHTDNRGDPDVQR---EVTLA 296 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 RA + L++ GV DR+ GF + +++ ANRR+D+ V +G Sbjct: 297 RAEAVRDYLVERGVPPDRLEA-WGFGPDKPVESNETAQGREANRRLDLRVVAPRG 350 >gi|285017363|ref|YP_003375074.1| ompa family outer membrane protein precursor [Xanthomonas albilineans GPE PC73] gi|283472581|emb|CBA15086.1| putative ompa family outer membrane protein precursor [Xanthomonas albilineans] Length = 366 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ I +L + +L + + + GHTD+ + N +LS RA Sbjct: 256 FDFNKSTLRPDAIGLLNEAVGILNSYPDLKVQVAGHTDSI---GSDKYNQKLSERRARVV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVEDR 341 Y L+K GV R+ G+ R + +P + NRR ++ VE++ Sbjct: 313 YDYLVKHGVDASRLDGPIGYGKTRPIAPNTNPDGSDNPEGRAKNRRTELNVENK 366 >gi|332186728|ref|ZP_08388471.1| type IV / VI secretion system , DotU family domain protein [Sphingomonas sp. S17] gi|332013380|gb|EGI55442.1| type IV / VI secretion system , DotU family domain protein [Sphingomonas sp. S17] Length = 475 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 11/179 (6%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 ++ A+ + RL + + + ++ L R G++ D + Sbjct: 297 ASSGDTPSTRLAALNPEARLTLSRPAAAMPAASSAQASKLRRFLEPEIREGLVKVEEDAQ 356 Query: 233 NT-------PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA-RDN 284 +F S P + +IG + + I GH D +P + DN Sbjct: 357 TVRARTTIGQLFRSGSDELEPGREPLFHRIGRAIEDEKGGVVIEGHADNTPVATVRFPDN 416 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 LS RA + +++ R++ G ++ S NRR++I+V R Sbjct: 417 MALSEARAETVAKLIRSDLSDPSRVT-TKGLGDTVPIASNADAAGKSQNRRVEIVVPRR 474 >gi|190573806|ref|YP_001971651.1| putative outer membrane lipoprotein [Stenotrophomonas maltophilia K279a] gi|190011728|emb|CAQ45347.1| putative outer membrane lipoprotein [Stenotrophomonas maltophilia K279a] Length = 231 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I + + FD S P+ L + L + +I + GHT Sbjct: 104 NTGIDVQRQGDNIMLN-LPDGITFDFGKSTLKPQFYGALNGVAGTLRDYNQTMIEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ + A +N RLS +RA S Q L+ GV RI + +G ++ ++D + N Sbjct: 163 DS--IGSDAVNN-RLSKERADSVAQYLIGQGVQSVRIETLGAGKSYPIADNSTDAGRAKN 219 Query: 332 RRIDILVEDRQ 342 RR++I V + Sbjct: 220 RRVEIRVIPLK 230 >gi|153873003|ref|ZP_02001734.1| outer membrane protein ompA [Beggiatoa sp. PS] gi|152070531|gb|EDN68266.1| outer membrane protein ompA [Beggiatoa sp. PS] Length = 301 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD-----NWRLSLD 290 F+ S++ + LQKI VL ++ ++GH+DA P+R ++ N +LS Sbjct: 192 FNTSTTTLKQASTRQLQKIASVLKMVDPTMVKVKGHSDAQPWRGRSQSESKRLNLKLSQQ 251 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 RA S VL+ G ++ +++ G+ + + + + NRR++I V+ Sbjct: 252 RAESVKNVLVNEGFPKN-LTQAKGYGSNDPLVLGNSPAIWAKNRRVEIEVK 301 >gi|89070689|ref|ZP_01157958.1| OmpA family protein [Oceanicola granulosus HTCC2516] gi|89043710|gb|EAR49914.1| OmpA family protein [Oceanicola granulosus HTCC2516] Length = 229 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 10/138 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + ++ V + T +++++ +FD S+ L + L + Sbjct: 95 EAELRRSLGNNVRIDNTGDSLVVTL---PQDILFDTDSATLSGSLQSDLNALARSLNNYP 151 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 I++ GHTD + A N LS RA + L+ SGVS RI+ + G Sbjct: 152 STTITVIGHTDNT---GEASYNQNLSRRRAQAVTSTLISSGVSAGRINTV-GRGEDAPIA 207 Query: 323 AS--DPMNSANRRIDILV 338 + + NRR++I++ Sbjct: 208 TNLTEDGRRQNRRVEIII 225 >gi|313203887|ref|YP_004042544.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312443203|gb|ADQ79559.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 506 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + +L K+ +V+ + + I GHTD A N LS RA + Sbjct: 404 FESGKDVIKKSSFAILNKVVKVMNDNPSYNLEINGHTDNQ---GAAAMNLTLSQKRADAV 460 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L K+GV +++ GF A+ + NRR++ V Sbjct: 461 KAYLTKNGVDAGKLAA-KGFGQTVPVADNATAAGRAKNRRVEFKV 504 >gi|229591493|ref|YP_002873612.1| hypothetical protein PFLU4061 [Pseudomonas fluorescens SBW25] gi|229363359|emb|CAY50495.1| putative outer membrane protein [Pseudomonas fluorescens SBW25] Length = 257 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 19/235 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL- 175 + + Q + + L +S TR + D L + + + Sbjct: 22 TPPENPQLLQARSQFSSLQQKPESNTLAAVETRIASNAVDRANQLSLHNRTDPQIDQLAY 81 Query: 176 -----PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI--VKGVLFETTRTGILISI 228 L+++ I++ K +L ++A + + + ++ + T G +++ Sbjct: 82 LATQKIALAEQTIVSRKTDAQLDNIAVDRTQVQLDVRTAQLKALQAMKARPTERGQVVTF 141 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287 D +FD + P + Q + L + E + + G TD++ N L Sbjct: 142 GD----VLFDTGRAELKPGSQRDFQGLATFLLQNPERQVRVEGFTDST---GGDAFNQSL 194 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 S RA + + L + GV R+ + G+ + S NRR++++V + Sbjct: 195 SERRAQAVARGLQQLGVGPQRM-AVMGYGKQFPVADNVSAQSRQLNRRVEVIVSN 248 >gi|3493603|gb|AAC33455.1| outer membrane protein homolog [Vitreoscilla sp. C1] Length = 217 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 E R G I ++ + F S L + VLA T+ I+I GHT Sbjct: 90 NTQVEVNRVGDEIRLV-MPESITFATGSYQLNSSASTSLNSVSSVLAQYTDTTINIVGHT 148 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ N LS +RA + L+ V+ +RI+ + G + +++ + Sbjct: 149 DST---GSDAINEPLSRNRASAVANYLVSRNVASNRITTV-GAGCRQPVASNNTVAGRAE 204 Query: 331 NRRIDILVEDRQ 342 NRR++I V Q Sbjct: 205 NRRVEITVNPIQ 216 >gi|237741116|ref|ZP_04571597.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|229430648|gb|EEO40860.1| outer membrane protein [Fusobacterium sp. 4_1_13] Length = 144 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L+ I E + + I+I+GHTD+ + A N++ Sbjct: 18 TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIQGHTDS--IGSNAY-NFK 74 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G++EDRI I + ++ + NRR++ + R+ Sbjct: 75 LSRRRAESVKAKLLEFGLAEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRE 132 >gi|15836945|ref|NP_297633.1| outer membrane protein [Xylella fastidiosa 9a5c] gi|9105169|gb|AAF83153.1|AE003886_12 outer membrane protein [Xylella fastidiosa 9a5c] Length = 389 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + VL++ E+L + + + GHTD++ A N +LS RA Sbjct: 286 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 342 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 Y L +G+ R+ G+ + + NRR ++ V++ Sbjct: 343 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 389 >gi|162147969|ref|YP_001602430.1| outer membrane lipoprotein [Gluconacetobacter diazotrophicus PAl 5] gi|209542586|ref|YP_002274815.1| OmpA/MotB domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|172046688|sp|P84838|OMPC_GLUDA RecName: Full=Outer membrane protein; AltName: Full=OMPC; Flags: Precursor gi|161786546|emb|CAP56128.1| Outer membrane lipoprotein [Gluconacetobacter diazotrophicus PAl 5] gi|209530263|gb|ACI50200.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 378 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD S ++ + + H T I + G+TD A P + N LS+ R Sbjct: 270 FFDWDRSDLTARAREIVAEAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEKYNMGLSIRR 329 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A S L++ GV I I G+ + + P NRR++I++ Sbjct: 330 AQSVKAELIRDGVPTGAID-IHGYGEQHPLVPTGPNTREPQNRRVEIIL 377 >gi|217415925|dbj|BAH03186.1| putative OmpA-family membrane protein [Edwardsiella tarda] Length = 576 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD S+ T ++ + + A +I + GHTD + + N Sbjct: 438 IVRLDSMSLFDSGKSVLKTGSTKWLVNSLVGIKAKPGWLIVVSGHTDNT---GSPQLNQM 494 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA + + +G + + G+ R +D + NRR++I + + Sbjct: 495 LSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVATNDTPEGRALNRRVEISLVPQ 551 >gi|241767706|ref|ZP_04765331.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] gi|241361321|gb|EER57865.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] Length = 219 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + ++K++ + ++ L +A + G T I I + +F Sbjct: 44 QIDLVASLKQEVEKRQQEEQRRMALEKALAIPLASG---RVTVHNGRIGIS---GSVLFA 97 Query: 239 KSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPF----RNIARDNWRLSLD 290 S PE +L+ + L E++ + G TD + DN LS Sbjct: 98 TGSDELRPEGRQLLKSLVPPLQVYLRERDEMLMVSGFTDNTTLLRGPHQRFADNLELSAQ 157 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRID 335 RA + + L+ G+ ++ + A + +D + NRR++ Sbjct: 158 RALTVARALIDEGMPSSQVFAAAFGAEQPVADNADEKGRAQNRRVE 203 >gi|237750612|ref|ZP_04581092.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC 43879] gi|229373702|gb|EEO24093.1| flagellar motor rotation protein MotB [Helicobacter bilis ATCC 43879] Length = 255 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 10/136 (7%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHST-- 263 +++ I G L E G + + + +F+ ++ + + L + +A Sbjct: 105 LSNLIQDGGLLEQIEQGTTLRL---PSDILFEPGTAELVNQDRKTELDLLATAIAKMPPE 161 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I+IRG+TD S R+N+ L+ RA + + LM GV R+ + + + + Sbjct: 162 VTINIRGYTDNSSPAG-YRNNYELAAARASNVMEYLMSRGVDPARL-SFTSYGQYNPIVP 219 Query: 324 SDP--MNSANRRIDIL 337 + AN R+++ Sbjct: 220 NTSEVNRRANNRVEVF 235 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 1/161 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK ++ P W + YADF+++L+A F+ ++ I+A + KA+ + F Sbjct: 1 MAKKCKCEECPA-GEKWAVPYADFLSLLLALFIALYAISAANTSRVKAVTEAFITIFDAT 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + + PP+ + + ++ + N T + + + Sbjct: 60 PMPERTMPVMIIPPDPGTVRQETKDTLKNTSTNLNAPTTVVTITQLSNLIQDGGLLEQIE 119 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 + + + + + + + E + +PP Sbjct: 120 QGTTLRLPSDILFEPGTAELVNQDRKTELDLLATAIAKMPP 160 >gi|34556650|ref|NP_906465.1| CADF precursor [Wolinella succinogenes DSM 1740] gi|34482364|emb|CAE09365.1| CADF PRECURSOR [Wolinella succinogenes] Length = 341 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P + ++ L H + GHTD+ + N +LS R+ + Sbjct: 236 FPFDSAEITPAYMDEVKDFALFLENHKGVSAKLEGHTDS---KGSDAYNKKLSAKRSNAV 292 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L+K G+ + R+S GF R A+D NRR++ ++ + Sbjct: 293 KEALIKLGIDKSRLSS-EGFGEERPIADNATDEGRQKNRRVEAIIAPLK 340 >gi|153004024|ref|YP_001378349.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027597|gb|ABS25365.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 506 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 8/113 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289 ++ FD ++ VL I +LA E + + GHTD N LS Sbjct: 393 KDAIQFDTGRDTLRSQSFPVLDAISGILAAHPELRRVRVEGHTDDV---GTNAYNKDLSD 449 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA + + L G+ R+ +G+ R + + NRR++ + D Sbjct: 450 RRARTVVRYLAGKGIVPGRLVP-AGYGEERPIAPNTSALGRAKNRRVEFTIVD 501 >gi|256846747|ref|ZP_05552203.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|256717967|gb|EEU31524.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] Length = 190 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L+ I E + + I+I GHTD+ + A N++ Sbjct: 61 TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 117 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 118 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 175 >gi|305432269|ref|ZP_07401432.1| fibronectin-binding protein [Campylobacter coli JV20] gi|304444617|gb|EFM37267.1| fibronectin-binding protein [Campylobacter coli JV20] Length = 332 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 229 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 285 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L K GV + RI + G+ + + ++D + NRR++ Sbjct: 286 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDTKEGRADNRRVE 326 >gi|226229138|ref|YP_002763244.1| hypothetical protein GAU_3732 [Gemmatimonas aurantiaca T-27] gi|226092329|dbj|BAH40774.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 457 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ L++I +L+ H+ + I GHTD A N LS RA + Sbjct: 355 FDTGKDVIRPESTPTLKEIAAMLSEHADLQLIIEGHTDNV---GAAPANLALSQRRADAV 411 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L+ G+ R++ G A+ NRR++++ Sbjct: 412 RSALVSDYGIDGGRLTA-KGLGQTVPATANTTPEGRQQNRRVELV 455 >gi|187251173|ref|YP_001875655.1| peptidoglycan-associated (lipo)protein [Elusimicrobium minutum Pei191] gi|186971333|gb|ACC98318.1| peptidoglycan-associated (lipo)protein-like outer membrane protein [Elusimicrobium minutum Pei191] Length = 189 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 20/170 (11%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGL--VADNIVKGVLFETTRTGILISIIDQRN 233 P + K + + K + + K +S +SG V K V+ TT Sbjct: 36 PKVVKIEKKVVIVKHQAKPEPKNLSEEVSGYASVRQAGTKQVVTFTTP------------ 83 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F+ +S E+ L+K+ VL ++G+TD+ + A + LS RA Sbjct: 84 -ILFETNSDKLKTESYDPLKKVAVVLKARPNMQTEVKGYTDS--LGDPAYNV-VLSEKRA 139 Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 S VL+++GV+E ++ G A + + NRR+++ + ++ Sbjct: 140 NSVRNVLVENGVNEANVTAKGYGAADPIADNKTKEGRAKNRRVELDITNK 189 >gi|92115867|ref|YP_575596.1| OmpA/MotB [Nitrobacter hamburgensis X14] gi|91798761|gb|ABE61136.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 334 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 101/313 (32%), Gaps = 19/313 (6%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSI 102 ++A + ++ A D + N L+ +G F + K+ LS Sbjct: 26 AMLAIAMGLFGAIAAHADATIPSKDIANARDNALLKRYEGSFIMSYEKLAFTDFKVPLSK 85 Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 E + D + K+ +E ++ +E + R+ + + Sbjct: 86 LEKAGNDRRDRMNNQVFKPKEEIEIEGARTRIAYLLPAERSPLEVLRNYQDV-VKAAGGE 144 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 + + EE P S + + L + +V V + Sbjct: 145 VLYACKGEECGGDPERSSDGGGDGYVTVQAFQLKDDLYCKALNERTVALVHIVEPKPREQ 204 Query: 223 GILISIIDQRNTP------------MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269 +++ D+ FD + + PE+ L +I +L + + I Sbjct: 205 KMVVVKADEMARSIGATGRIALYGIFFDTAKADLKPESNPTLAEIAGLLNADPKLAVLIV 264 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327 GHTD N LS RA + + L + E R + +G ++D Sbjct: 265 GHTDNQ---GAFDYNLDLSRRRAEAVVKTLAANFRVEPRRLRAAGVGMMAPAASNDAEDG 321 Query: 328 NSANRRIDILVED 340 + NRR++++ + Sbjct: 322 RAKNRRVEVVKLN 334 >gi|302337004|ref|YP_003802210.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301634189|gb|ADK79616.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 405 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 13/161 (8%) Query: 185 AMKRKKRLQDLAKK-ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 A R+ R + + K+ + L +A+N + G++IS+ F S++ Sbjct: 252 ATARQVRSRSMDKETVKDELERRIAENGIPDAGVRVGDDGVIISL----ENIQFKADSAV 307 Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 PLP + L+++ +L + I + GHT + LSL+RA + L Sbjct: 308 PLPGEMDKLKRVVSLLKLYPDRDILVTGHTALAGTAEGRM---ALSLERARTVAAFLKDE 364 Query: 303 -GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 + +DR+ I G +D NRR++I + + Sbjct: 365 LNIDDDRLM-IEGKGAGAPVAPNDTEEGKRKNRRVEITILE 404 >gi|255530097|ref|YP_003090469.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343081|gb|ACU02407.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 263 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 17/151 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR+ A +I + + E R G I I+ + +F S + Sbjct: 113 KRMDKQAAEIQNAIPNA-----------EVIREGEGI-IVKFDSGILFGFDKSDLTAQAK 160 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ + L I + GHTD + N LS RA + + GV R Sbjct: 161 TNIKSLAGSLNQYPGTDIKVIGHTDN---KGTEAYNMGLSERRAAAVKAYAVSQGVPSSR 217 Query: 309 ISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + I GF+ +++ +ANRR+++++ Sbjct: 218 LITIGKGFSEPIEDNSTEAGRAANRRVEVVI 248 >gi|222100883|ref|YP_002535451.1| Motility protein B [Thermotoga neapolitana DSM 4359] gi|221573273|gb|ACM24085.1| Motility protein B [Thermotoga neapolitana DSM 4359] Length = 288 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265 +++ + E G LI + D F+ S+ E +L K+G+ V+ H+T V Sbjct: 88 LSEEYKGKITVEERDEGTLIILKDM---VFFETGSAKLTAEAKDLLAKVGQIVIEHTTNV 144 Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + G+TD P +I NW LS RA S + + E R+ Sbjct: 145 LEVFGYTDDRPVLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 189 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 42/133 (31%), Gaps = 1/133 (0%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 + W Y+D +T+L+ FF+ + ++ + + + Sbjct: 3 AKKQEEQKGSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGQPPSV 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G P +S+ I + + + + ++ + F +++ Sbjct: 63 LMGGRSINEEPLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIILKDMVFFETGSAKL 122 Query: 140 SEHCKNSLTRDSE 152 + K+ L + + Sbjct: 123 TAEAKDLLAKVGQ 135 >gi|192358872|ref|YP_001981881.1| putative agglutination protein [Cellvibrio japonicus Ueda107] gi|190685037|gb|ACE82715.1| probable agglutination protein [Cellvibrio japonicus Ueda107] Length = 599 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 8/125 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFR 278 R ++ + + +FD SS+ P L + + ++ +V I + GHTD + Sbjct: 478 RDELITDVNNLSGDALFDVGSSVLKPGATQKLDALIAQIKNTPKVVGIRVEGHTDNT--- 534 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 N LS RA + +G+ E+ + GF R ++ +ANRR++I Sbjct: 535 GTDALNIPLSKARAQRVRDYAVLNGL-ENIPVSVDGFGASRPVADNNTEAGRAANRRVEI 593 Query: 337 LVEDR 341 + + Sbjct: 594 SITRQ 598 >gi|294672984|ref|YP_003573600.1| OmpA family protein [Prevotella ruminicola 23] gi|294473810|gb|ADE83199.1| OmpA family protein [Prevotella ruminicola 23] Length = 374 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +F+ + PE++ +QK+ + + + ++GHTD + N LS R Sbjct: 269 NNILFETGKATLKPESMEEIQKVADYMKKNPSVRFEVQGHTDNQ---GSDKINDPLSQQR 325 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 A + + L + G E + + G H +D + NRR++ + Sbjct: 326 AEAVVKALAQLGCDEFNLRAV-GKGSHEPVADNKTDAGRAQNRRVEFI 372 >gi|213963523|ref|ZP_03391776.1| inner membrane lipoprotein YiaD [Capnocytophaga sputigena Capno] gi|213953803|gb|EEB65132.1| inner membrane lipoprotein YiaD [Capnocytophaga sputigena Capno] Length = 229 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 16/155 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ AKKI + G + GI+++ + FD + ++ Sbjct: 76 QMDKQAKKIEEEIPGAD---------VKRVDDGIVVTFDENNGGVYFDTNKYNINEKSKQ 126 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L K+ +L + + + GHTD+ N LS RA + G++ R Sbjct: 127 TLDKLAAILKEYPDTNVLVAGHTDSV---GKDEYNLGLSQRRAQAVTNYFKSKGLAGSRF 183 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + ++D + NRR+++++ + Sbjct: 184 T-TKWYGEKNPIASNDTAEGRAKNRRVNVVIVPNE 217 >gi|15639284|ref|NP_218733.1| outer membrane protein (tpn50) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025526|ref|YP_001933298.1| outer membrane protein TpN50 [Treponema pallidum subsp. pallidum SS14] gi|586110|sp|P38369|TPN50_TREPA RecName: Full=Outer membrane protein tpn50; AltName: Full=Antigen tpp57; Flags: Precursor gi|3322558|gb|AAC65272.1| outer membrane protein (tpn50) [Treponema pallidum subsp. pallidum str. Nichols] gi|7144504|gb|AAA20517.2| TpN50 precursor [Treponema pallidum] gi|189018101|gb|ACD70719.1| outer membrane protein TpN50 [Treponema pallidum subsp. pallidum SS14] gi|291059692|gb|ADD72427.1| outer membrane protein Tpn50 (Antigen tpp57) [Treponema pallidum subsp. pallidum str. Chicago] Length = 417 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 10/143 (6%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L + D + T G+ ISI FD S+ P L+KI E+L Sbjct: 282 ELQETLKDLHMPDAKVRETEEGVTISI----ENVQFDADSASLAPSEYEKLRKIAELLRA 337 Query: 262 STEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + GH + R +D R+S +RA + L + GV + G + Sbjct: 338 FPDRELLVSGH---AARRGSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQS 394 Query: 321 KIASDPMNSA--NRRIDILVEDR 341 +D + NRR++I + + Sbjct: 395 IAPNDSEDGRRKNRRVEITIISK 417 >gi|50119379|ref|YP_048546.1| putative porin [Pectobacterium atrosepticum SCRI1043] gi|49609905|emb|CAG73343.1| putative porin [Pectobacterium atrosepticum SCRI1043] Length = 506 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + R + LAK + ++ T G++ + D MFD +S+ + Sbjct: 78 QNREEALAKIAQEENIAITTRSLQSQEKSGTETVGLVAQVQDS---GMFDTNSAQLSTDG 134 Query: 249 IVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 + ++KI + + VI + GHTDA+ A N RLS RA + +VL ++G+S Sbjct: 135 LRQVKKIATAMKEGDQSGVILVVGHTDAT---GSAEWNQRLSEQRAQNVGRVLEQAGLSA 191 Query: 307 DRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337 ++ + +G A + ++NRR++I+ Sbjct: 192 QKLYFQGAGSARPVADNVTITGRTSNRRVEIV 223 >gi|34556728|ref|NP_906543.1| motility protein MotB [Wolinella succinogenes DSM 1740] gi|34482442|emb|CAE09443.1| MOTB PROTEIN [Wolinella succinogenes] Length = 255 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 12/190 (6%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G LEK E + + + + A I+ S + + Sbjct: 51 GSIQGALGVLEKGQMTEIMPPKRIQALPIQQNVDTPEAINAFASMITEY-SEMTKISDGP 109 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEV--ISIRG 270 V E G ++SI + +F+ S+ E I+ L++ + + I + G Sbjct: 110 AVKMEEAEDGFILSI---PSELLFESGSATITNKEGILFLKRTALEINKLSNDMHIKVIG 166 Query: 271 HTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 HTD R +DNW LS+ R + ++L++ V+ RIS G ++ Sbjct: 167 HTDNDRLRPTATYKDNWELSIARGVNVAKMLLEERVNPARISA-GGNGEFDPVASNATPE 225 Query: 327 MNSANRRIDI 336 + NRR+D+ Sbjct: 226 GKAKNRRVDL 235 >gi|262275699|ref|ZP_06053508.1| outer membrane protein A precursor [Grimontia hollisae CIP 101886] gi|262219507|gb|EEY70823.1| outer membrane protein A precursor [Grimontia hollisae CIP 101886] Length = 331 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 13/113 (11%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNW 285 + N +F + P Q++G +L +I GHTD+ N Sbjct: 217 EADNVELFAFGKAELSPNAS---QQLGPMLKRLQNFDEATATIIGHTDSV---GSEAFNQ 270 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +LS RA S + +G+S +R++ I G ++ + NRR++I Sbjct: 271 KLSEQRAQSVANYFISNGISAERLT-IIGKGETSPIASNKTKEGRAKNRRVEI 322 >gi|262197467|ref|YP_003268676.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262080814|gb|ACY16783.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 540 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 23/135 (17%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279 G I I+D+ + F + L ++ VL+ + +VL + + I GHTD R Sbjct: 410 EGDQIIILDKVH---FATDEDVILDDSKPVLEAVAQVLRTRPDIERVRIEGHTD---VRA 463 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNSA-- 330 N LS R S Q L+ SGV +R+ G+ H R I + +++ Sbjct: 464 SDAYNLDLSQRRVNSVMQFLIDSGVGAERLEA-KGWGHTRPIIDDAHCDRPDEQLDAECT 522 Query: 331 -----NRRIDILVED 340 NRR++ + Sbjct: 523 RLTSMNRRVEFHIRR 537 >gi|207724483|ref|YP_002254880.1| outer membrane protein [Ralstonia solanacearum MolK2] gi|206589704|emb|CAQ36665.1| outer membrane protein [Ralstonia solanacearum MolK2] Length = 277 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 78/254 (30%), Gaps = 19/254 (7%) Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + + + + + R + + + + + Sbjct: 32 GAPGDPAPATAANPVPGQVVAGGMVPDEATKASVLARLRELYGSANVVDQIEVGNVVSPP 91 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS--- 204 K L + + + +R++ D+A + ++ + Sbjct: 92 NWTGNVQKILSPQIKQVNRGQLNIDGTQVAVHGDVQNEAQRQQLASDMATTLGASYTIKN 151 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 GL + + L + T +I F+ S+ P+ +L ++ VL Sbjct: 152 GLRVAAVSEQSLLDQTLANRIIE---------FETGSATLTPKGRGILDEMAAVLPRLNG 202 Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I I GHTD N LS RA + L+ G ++ I G + A Sbjct: 203 RKIEIVGHTDN---SGSRAMNLNLSQARAETVKSYLINKGAEPGTLTAI-GVGPDQPVAA 258 Query: 324 S--DPMNSANRRID 335 + D S NRRI+ Sbjct: 259 NTTDEGRSRNRRIE 272 >gi|262278657|ref|ZP_06056442.1| outer membrane protein [Acinetobacter calcoaceticus RUH2202] gi|262259008|gb|EEY77741.1| outer membrane protein [Acinetobacter calcoaceticus RUH2202] Length = 255 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 39/186 (20%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + D++ +I + PP L++ + ++ + D+ +K + Sbjct: 106 MLNPADIQPTIQSFQGLVQPPYQLYSQLSVNQAEQ--------------KIIDDALKNRI 151 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E F+ S++ +L ++ L + I GHTD+ Sbjct: 152 IE------------------FESGSAVLTDAGQKILDEMAVALNKVGGKKVKIVGHTDS- 192 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 A N +LS DRA + L+ + D +S G + + NRR Sbjct: 193 --SGDATKNLKLSQDRALAVKNYLISKSIPADHLSA-EGLGSSKPVADNTSPEGRKKNRR 249 Query: 334 IDILVE 339 I+ V Sbjct: 250 IEFTVL 255 >gi|253701760|ref|YP_003022949.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251776610|gb|ACT19191.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 486 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 T +F SS P+ + ++KI ++L + + GHTD + RDN +LSL RA Sbjct: 377 TVLFAVDSSDVSPKYLGQIKKIADLLKANPGSTALVEGHTDNT---GALRDNLKLSLRRA 433 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + + L++ GV R+ + G + A++ NRR Sbjct: 434 ENLKRALVRYGVDP-RLLAVKGEGSLQPVASNATEQGRQKNRR 475 >gi|104780438|ref|YP_606936.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95109425|emb|CAK14126.1| putative outer membrane protein, OmpA family [Pseudomonas entomophila L48] Length = 230 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ L I L + +S+ GHTD+ + N +LS RA S Sbjct: 126 FEFDSARLTANDKERLNTIATRLKKEAPSARLSVTGHTDSV---GSDKYNQKLSEARARS 182 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + L++SGV + G + + + NRR +I ++ Sbjct: 183 VVEYLVESGVPRASFVSVVGAGETQPVADNATADGRAMNRRTEIKIQR 230 >gi|312173865|emb|CBX82119.1| putative type VI secretion system-associated hypothetical protein [Erwinia amylovora ATCC BAA-2158] Length = 551 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T + + +FD P + +L K + I + GHTD + Sbjct: 420 TPQAVRL-----DALSLFDTGKYQLKPNSTKMLVKALMGIKAKPGWLIVVAGHTDNT--- 471 Query: 279 NIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 A N LS RA + +L S VS + G+ R ++D ANRR++ Sbjct: 472 GEANANQVLSHKRAEALRHWMLSTSDVSPT-CFAVQGYGATRPIASNDTVEGREANRRVE 530 Query: 336 ILVEDR 341 I + + Sbjct: 531 ISLVPQ 536 >gi|292489687|ref|YP_003532577.1| putative type VI secretion system-associated protein [Erwinia amylovora CFBP1430] gi|292898097|ref|YP_003537466.1| outer membrane protein [Erwinia amylovora ATCC 49946] gi|291197945|emb|CBJ45046.1| putative outer membrane protein [Erwinia amylovora ATCC 49946] gi|291555124|emb|CBA23275.1| putative type VI secretion system-associated hypothetical protein [Erwinia amylovora CFBP1430] Length = 551 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T + + +FD P + +L K + I + GHTD + Sbjct: 420 TPQAVRL-----DALSLFDTGKYQLKPNSTKMLVKALMGIKAKPGWLIVVAGHTDNT--- 471 Query: 279 NIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 A N LS RA + +L S VS + G+ R ++D ANRR++ Sbjct: 472 GEANANQVLSHKRAEALRHWMLSTSDVSPT-CFAVQGYGATRPIASNDTVEGREANRRVE 530 Query: 336 ILVEDR 341 I + + Sbjct: 531 ISLVPQ 536 >gi|332559394|ref|ZP_08413716.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332277106|gb|EGJ22421.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 310 Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + + L + I GHTDA N LS RA S Sbjct: 206 FGSGSAELEDRAYPALADLAQWLKEDPARRVVIVGHTDA---SGGLEGNVTLSRARAASV 262 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVE 339 + L+ GV +++ G+ R ++ + NRR+++++ Sbjct: 263 RERLIARHGVDGAQVTADGVGYLAPRATNRTEEGRARNRRVEVMLL 308 >gi|254706491|ref|ZP_05168319.1| flagellar motor protein MotB [Brucella pinnipedialis M163/99/10] Length = 47 Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLV 50 + + II+++ D ++ G WKI YADFMT +MAFFLV Sbjct: 6 ETKREIIIVRRGGHDDHEAHHGGVWKIAYADFMTAMMAFFLV 47 >gi|149917198|ref|ZP_01905698.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149822114|gb|EDM81507.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 395 Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 12/114 (10%) Query: 232 RNTPMFDKSSSIPLPET-----IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 MFD +L + VL + ++ I I GHTD+ + +R N Sbjct: 275 DGKIMFDSGKYDLKSRKFADSNSKLLDDVYTVLNTNPDITIEIGGHTDS---KGSSRSNQ 331 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 RLS +R S + L+ G+ RI+ G+ + NRR++IL Sbjct: 332 RLSENRVKSVREYLVDKGIDGSRIT-FKGYGEDVPVDTNRTKEGRENNRRVEIL 384 >gi|293611455|ref|ZP_06693750.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826239|gb|EFF84609.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123511|gb|ADY83034.1| OmpA/MotB [Acinetobacter calcoaceticus PHEA-2] Length = 159 Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 ++K F T G + + +FD +++ L ++ L + I Sbjct: 33 KLLKKEGFVLTDEGWTLGL---PERLLFDFNNAQLKQSHEAELVRLANQLNKYDLNKLKI 89 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD A N +LS +RA S + + G ++ I + G + + + + Sbjct: 90 VGHTDDV---GDATYNQKLSEERAQSVANLFLTRGFKKENIY-VIGRGSTQPYVPNTTNE 145 Query: 327 MNSANRRIDILVED 340 + NRR+ I+V Sbjct: 146 NRAINRRVAIVVIP 159 >gi|15889974|ref|NP_355655.1| porin [Agrobacterium tumefaciens str. C58] gi|15157937|gb|AAK88440.1| porin [Agrobacterium tumefaciens str. C58] Length = 220 Score = 79.5 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 ++G TR G I + + F +P L + VL I I Sbjct: 91 LQGTGVSVTRRGDSIVLN-MPSNITFATDQDQVIPPFYQTLDSVAIVLNKF-NRTLIDIN 148 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD++ + N LS RA S L GV + RIS + GF + ++ Sbjct: 149 GHTDST---GSLQHNQALSERRAASVANYLGARGVDQRRISTL-GFGPSQPIASNATSDG 204 Query: 328 NSANRRIDILVEDRQG 343 + NRR+++L+ +G Sbjct: 205 RAQNRRVEVLISPLKG 220 >gi|330807884|ref|YP_004352346.1| OmpA/MotB, OmpA family protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375992|gb|AEA67342.1| Conserved hypothetical protein; putative OmpA/MotB, putative OmpA family protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 241 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I++ D +FD S E L + L+H+ I + GHTD+ Sbjct: 128 VITLND-AGKVLFDFDKSDLTAEARSQLDGLMGKLSHANVASIRVVGHTDSV---GSDAY 183 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 N LS RA S + L+ G++ D+++ G + D + NRR+++ ++ Sbjct: 184 NQGLSERRASSVVEYLLTQGLAPDKLTS-EGKGESEPVADNETDEGRAQNRRVELHIQR 241 >gi|313205096|ref|YP_004043753.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312444412|gb|ADQ80768.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 426 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S + L +I L + +S+ G+TD + N LS+ RA S Sbjct: 323 FEFGSDKLTTNSYATLDQIALTLKDKSAKVRLSVAGYTD---YIGTEEYNQILSVKRANS 379 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV ++ I+G+ ++ ANRR++ + Sbjct: 380 VRIYLLNKGVPASSVT-ITGYGEKDPVANNNTDKGRQANRRVEFQI 424 >gi|84625147|ref|YP_452519.1| outer membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578417|ref|YP_001915346.1| OmpA family outer membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369087|dbj|BAE70245.1| outer membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522869|gb|ACD60814.1| OmpA family outer membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 365 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ I +L + E+L + + + GHTD+ + N +LS RA + Sbjct: 256 FDFNKSTLRPDAISILSEATEILKRYPDLKVEVAGHTDS---KGTDAYNQKLSERRATTV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 Y L K+GV R+ G+ R + +P + NRR ++ V++ Sbjct: 313 YDYLTKNGVDASRLVGPIGYGKSRPIAPNTNPDGSDNPEGRAKNRRTELNVQN 365 >gi|313674269|ref|YP_004052265.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312940967|gb|ADR20157.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 526 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 11/135 (8%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265 + DN + + + G I + + +F + +S + L ++ +L + Sbjct: 397 IEDNSTVKLELLSLKEGTTIQL----KSVLFKRGTSEIKDGSFEELDRVYTMLKKNPTVE 452 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324 I + GHTD + A+ N LS R+ + L++ G++ R+ G+ R ++ Sbjct: 453 IELAGHTDNT---GSAKLNIELSQKRSDKIKEYLVEKGINPKRLQS-KGYGGARPIASNK 508 Query: 325 -DPMNSANRRIDILV 338 + NRR++ + Sbjct: 509 SEATRKLNRRVEFTI 523 >gi|28199584|ref|NP_779898.1| outer membrane protein [Xylella fastidiosa Temecula1] gi|28057699|gb|AAO29547.1| outer membrane protein [Xylella fastidiosa Temecula1] Length = 389 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + VL++ E+L + + + GHTD++ A N +LS RA Sbjct: 286 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 342 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 Y L +G+ R+ G+ + + NRR ++ V++ Sbjct: 343 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 389 >gi|121603984|ref|YP_981313.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120592953|gb|ABM36392.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2] Length = 220 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 16/152 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++QD + +G GV T+ + + D + FD S Sbjct: 76 KKMQDQKIAMERATAGT-------GVAVSQTQDN-RLKL-DIPSDVSFDVGRSAIKSNFA 126 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL L + +SI GHTD++ ++ LS+DRA +A L+ GV+ R Sbjct: 127 PVLTNFATSLNQNPITTVSIIGHTDSTGSDSVNNP---LSVDRANAARDYLVGRGVAAQR 183 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I G + + NRR++I V Sbjct: 184 I-ATDGRGSREPIADNSSAQGRAKNRRVEIYV 214 >gi|157370029|ref|YP_001478018.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568] gi|157321793|gb|ABV40890.1| OmpA/MotB domain protein [Serratia proteamaculans 568] Length = 569 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 228 IIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD T +++ + + A +I + GHTD + N Sbjct: 430 IVRLDSMSLFDSGKYALKAGSTKMLINSLVGIKAKPGWLIVVAGHTDNT---GNPALNQT 486 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS RA + + +G + + G+ R +D + NRR++I + + Sbjct: 487 LSQKRAAAVRDWMRDTGDVPESCFAVQGYGESRPVATNDTPEGRALNRRVEISLVPQ 543 >gi|312174309|emb|CBX82562.1| putative outer membrane lipoprotein yiaD precursor [Erwinia amylovora ATCC BAA-2158] Length = 221 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR+G I + N FD SSS P L + VL Sbjct: 84 VQEAKLRDKMKGTGVSVTRSGDNIVLN-MPNNVTFDSSSSTLKPAGANTLTGVAMVLKEY 142 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD+ + N LS RA L+ GV+ +R+ + +G Sbjct: 143 PKTAVNVVGYTDS---SGSRQLNMNLSQQRADGVGSALIAQGVAANRV-RTNGMGSDNPV 198 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 199 ASNSSAEGKAQNRRVEITLSPLQ 221 >gi|261252822|ref|ZP_05945395.1| outer membrane protein [Vibrio orientalis CIP 102891] gi|260936213|gb|EEX92202.1| outer membrane protein [Vibrio orientalis CIP 102891] Length = 222 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 16/210 (7%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + +++ G+ S I + + + ++ + Sbjct: 18 QATQRQNATTGESETNSATKGALIGALTGVAVGLATGDNADERRKHALIGAAGGAAVGGG 77 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM--------FDKSSSIPLPETIVVLQKI 255 G D + E +G+ + + N M F SS P L+ + Sbjct: 78 VGYYFDQQEAALRKELLDSGVQVERV-GENQLMLRLENGIGFQSSSYALDPSIHNTLRGV 136 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + I GHTD++ N LS RA S L+ GV+ R G Sbjct: 137 ARILVEYPDTSLVIDGHTDST---GSDTTNQVLSERRAESVRSYLVSQGVAAGRAVA-RG 192 Query: 315 FAHHRLKIASDPM--NSANRRIDILVEDRQ 342 +D + NRR++I + + Sbjct: 193 NGERYPICTNDTTTGRACNRRVEIQILPLK 222 >gi|296137072|ref|YP_003644314.1| OmpA/MotB domain protein [Thiomonas intermedia K12] gi|294341249|emb|CAZ89650.1| putative OmpA family protein [Thiomonas sp. 3As] gi|295797194|gb|ADG31984.1| OmpA/MotB domain protein [Thiomonas intermedia K12] Length = 226 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + L A G + T+T ++ F S+ P +L+ + Sbjct: 80 QHLEKQKQDLQAQAQASGTGVQVTQTQDNRLKMNVPADAGFATGSAQLNPRMYPILESLA 139 Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L + + + G TD + N+ LS +RA + L+ GV+ R++ G Sbjct: 140 TGLNQNPSETVQVFGFTDNT---GTDAINYPLSENRALTVKNFLVSRGVAPQRVT-TQGL 195 Query: 316 AHHRLKIASDP--MNSANRRIDILV 338 ++ +ANRR++I V Sbjct: 196 GPQNPVASNATAQGRAANRRVEIYV 220 >gi|77361745|ref|YP_341320.1| lipoprotein [Pseudoalteromonas haloplanktis TAC125] gi|76876656|emb|CAI87878.1| putative lipoprotein [Pseudoalteromonas haloplanktis TAC125] Length = 209 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 E R G + ++ + F S L I +V+ + +S+ GHTD++ Sbjct: 85 VEVVREGDNLRLV-MPSNITFATDQSYISSGFHNTLSAIAKVMNKYEKTYLSVEGHTDST 143 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 N LS RA S L+ + +RI +G+ R ++D N + NRR Sbjct: 144 ---GKDSYNMSLSQQRAQSVKNYLVNQQIMAERI-STTGYGETRPISSNDSANGRAQNRR 199 Query: 334 IDI-LVEDRQ 342 ++I +V + Q Sbjct: 200 VEIQIVPNTQ 209 >gi|126641241|ref|YP_001084225.1| OmpA/MotB [Acinetobacter baumannii ATCC 17978] Length = 397 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 219 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 277 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + + + GHT Sbjct: 278 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 331 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 332 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 387 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 388 NRRIEFSV 395 >gi|312130324|ref|YP_003997664.1| v-type h(+)-translocating pyrophosphatase [Leadbetterella byssophila DSM 17132] gi|311906870|gb|ADQ17311.1| V-type H(+)-translocating pyrophosphatase [Leadbetterella byssophila DSM 17132] Length = 878 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 13/146 (8%) Query: 201 STLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 S + + D +++ + E ++ G + +D F + S+ ++ ++ I + Sbjct: 741 SFMDNGIEDQLIEFIEDENSKAGNDNWFNFVDLN----FKRGSNDIDESSMEEVKNIAAI 796 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I + G+TD + N +LS +RA + + L+ G+SEDR+S GF Sbjct: 797 LKEYPQVKIKVGGYTDNT---GTPEGNLKLSEERATNVKKALIALGISEDRLSS-EGFGQ 852 Query: 318 HRLKIAS--DPMNSANRRIDILVEDR 341 + + NRRI I V ++ Sbjct: 853 EHPVADNTTEEGRQKNRRIAISVREK 878 >gi|224823894|ref|ZP_03697003.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224604349|gb|EEG10523.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 221 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 7/138 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + KG ++T +D + FD +L + L + Sbjct: 83 QKAAMEQATKGTGVSVSQTADNQLKLDIPSDVSFDSGRYDIKSNMRPILDRFATTLNQNP 142 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I GHTD++ N LS++RA + L+ GV+ +RI I G Sbjct: 143 VTTVKIIGHTDST---GSDAINGPLSVNRASATRSYLVARGVAMNRI-SIDGRGSSEPIA 198 Query: 323 AS--DPMNSANRRIDILV 338 ++ + NRR++I V Sbjct: 199 SNGTAAGRAKNRRVEIFV 216 >gi|299770678|ref|YP_003732704.1| OmpA/MotB domain protein [Acinetobacter sp. DR1] gi|298700766|gb|ADI91331.1| OmpA/MotB domain protein [Acinetobacter sp. DR1] Length = 255 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 39/186 (20%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + D++ +I + PP L++ + ++ + D+ +K + Sbjct: 106 MLNPADIQPTIQSFQGLVQPPYQLYSQLSVNQAEQ--------------KIIDDALKNRI 151 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E F+ S++ +L ++ L + I GHTD+ Sbjct: 152 IE------------------FESGSAVLTDAGQKILDEMAVALNKVGGKKVKIVGHTDS- 192 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 A N +LS DRA + L+ + D +S G + + NRR Sbjct: 193 --SGDATKNLKLSQDRALAVKNYLISKSIPADHLSA-EGLGSSKPVADNTSPEGRKKNRR 249 Query: 334 IDILVE 339 I+ V Sbjct: 250 IEFTVL 255 >gi|170725705|ref|YP_001759731.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811052|gb|ACA85636.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 190 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + + + V +I L + + GHTD+ N LS RA + Sbjct: 88 FEFAQAEVMFAQWQVFTRIKRFLQEHDVKLCLLGHTDSV---GAEAGNMALSHLRALNVK 144 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 ++L+ G + DR ++ G A ++D + NRR+++ VE Sbjct: 145 RILVDDLGFNPDRF-QVKGMADTHPVASNDFPEGRAMNRRVELFVEP 190 >gi|322507807|gb|ADX03261.1| OmpA/MotB [Acinetobacter baumannii 1656-2] gi|323517407|gb|ADX91788.1| Outer membrane protein [Acinetobacter baumannii TCDC-AB0715] Length = 397 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + +++A + Q ++ +S++ + L A + Sbjct: 219 GDKITLKAGDAAALEALTAKVKALVPHTEVVAAAPETAEQSVSNSLSASQTALTAID-PN 277 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + + II+ F SS + +L + +L + + + GHT Sbjct: 278 NVDVNALVKALNLQIIN------FASGSSDIPADNKAILDQAATLLNKVSGVKLDVGGHT 331 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + + Sbjct: 332 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-KGHGSEQPVADNTTEEGRFK 387 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 388 NRRIEFSV 395 >gi|256846250|ref|ZP_05551707.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|256718019|gb|EEU31575.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] Length = 191 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L+ I E + + I+I GHTD+ + A N++ Sbjct: 62 TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 118 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 119 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 176 >gi|86134861|ref|ZP_01053443.1| OmpA family protein [Polaribacter sp. MED152] gi|85821724|gb|EAQ42871.1| OmpA family protein [Polaribacter sp. MED152] Length = 234 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR+ + AKKI + + G E GI+++ D+ + FD + S ++ Sbjct: 81 KRMDEQAKKIETEVPGA---------KVERVDDGIVVT-FDENSGVYFDTNKSNINTKSQ 130 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L ++ +V + I + GHTD + A N LS RA S L+ G++ R Sbjct: 131 QTLDRLAKVFLEFPDTKILVVGHTDNT---GNADYNLTLSEKRAKSVTNYLISDGIASPR 187 Query: 309 ISKI-SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + G A + ++ + NRR+++ + + Sbjct: 188 FQTLWYGEAQPKYDNSTAEGRAKNRRVNVAIVPNE 222 >gi|254473994|ref|ZP_05087387.1| OmpA family protein [Pseudovibrio sp. JE062] gi|211956883|gb|EEA92090.1| OmpA family protein [Pseudovibrio sp. JE062] Length = 220 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++ TR G I + N F + + VL + V + +++ Sbjct: 90 QQLQSSGVSVTRNGNQIVLN-MPNDVTFAVGQATLSSRAMQVLNSVALVAKEFPQTRLNV 148 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 GHTD + A+ N +LS RA S L GV+ RIS +G+ A++ Sbjct: 149 YGHTDNT---GSAQFNLQLSQRRADSVSNYLFNQGVNGARISA-AGYGLTSPIASNATEA 204 Query: 327 MNSANRRIDILV 338 + NRR++I++ Sbjct: 205 GRAQNRRVEIIL 216 >gi|220933311|ref|YP_002512210.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994621|gb|ACL71223.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 218 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G TR G + I++ FD + E VL + +VL + I + G Sbjct: 90 LEGTGVSVTRDGDNL-ILNMPGNITFDVNRDEVKSEFYPVLNSVAKVLKKYDKTAIEVAG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ N LSL RA S L+ G+ RI+ I GF HR ++ Sbjct: 149 HTDST---GTVEHNMALSLRRADSVAGYLLGQGIQNVRIATI-GFGPHRPIADNNTAQGR 204 Query: 329 SANRRIDILVED 340 S NRR+++ + Sbjct: 205 SLNRRVELTLIP 216 >gi|50956519|gb|AAT90766.1| conserved hypothetical protein [uncultured proteobacterium QS1] Length = 372 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 6/111 (5%) Query: 229 IDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 + + +FD S+ P T V++ + + A S +I I GHTD + A N ++ Sbjct: 251 VQLDSLSLFDAGSTELKPGSTKVLINALANIKAQSGWLIEIVGHTDTT---GNAEQNLQI 307 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 S RA + + + G + G A + ++D +ANRR+DI Sbjct: 308 SYARASAVRDWMQRMGDIPSNCFVVQGAAGSQPITSNDTASGRAANRRVDI 358 >gi|329946279|ref|ZP_08293873.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527571|gb|EGF54566.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 416 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281 G +I++ D +FD SS E L + VL S + ++GHTD+ + Sbjct: 297 GTVITLEDS---VLFDFGSSDLRSEASTTLTNLATVLKDSKAPKVQVQGHTDSV---SDD 350 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRR 333 N LS RA + L GV+ I + G+ R + +P NRR Sbjct: 351 ASNQTLSEQRAKAVTDALTSDGVTAA-IESV-GYGETRPVAPNESSDGFDNPAGRRLNRR 408 Query: 334 IDILV 338 +++ V Sbjct: 409 VEVFV 413 >gi|253998106|ref|YP_003050169.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4] gi|253984785|gb|ACT49642.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] Length = 170 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 +K F T G +S D +FD + ++ + +QK+ + L + + I G Sbjct: 45 LKEQGFVHTDDGWALSFAD---KLLFDTNQAVLNDRSRGAVQKVSKALQSVGLDKMRIEG 101 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 H DA+ N LS RA++ ++SG+ + I + G ++ Sbjct: 102 HADAT---GRESYNVELSEQRAWAVADAFIQSGMPKSGII-VRGMGSQSPVASNATVAGR 157 Query: 329 SANRRIDILVED 340 + NRR+ I+V Sbjct: 158 AENRRVSIIVVT 169 >gi|227538390|ref|ZP_03968439.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241772|gb|EEI91787.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 438 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 10/128 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 K V+ E + + +I D FD S P + L ++ +L + + GHT Sbjct: 318 KIVVTEADKKVVDEAIKDLE----FDLGKSTIRPTSYPSLDRVASLLIEKNFSLKLAGHT 373 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D + + N RLS +RA + L G + RI +G+ ++ + Sbjct: 374 DNT---GSMQTNLRLSKERAEAVKAYLTSKGANPSRIEA-TGYGPNQPIATNATAEGRQQ 429 Query: 331 NRRIDILV 338 NRR++ + Sbjct: 430 NRRVEFTL 437 >gi|162145880|ref|YP_001600338.1| outer membrane protein [Gluconacetobacter diazotrophicus PAl 5] gi|209543812|ref|YP_002276041.1| OmpA/MotB domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784454|emb|CAP53984.1| Outer membrane protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531489|gb|ACI51426.1| OmpA/MotB domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 380 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD ++ ++ + + T I + G+TD A P AR N LS+ R Sbjct: 272 FFDWDQAVLTDRARAIVATAAQASTRTQTTRIEVDGYTDNSAAHPGPRGARYNMALSVRR 331 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A + L++ GV I + GF +A+ P NRR++I++ Sbjct: 332 AQAVQAELIRDGVPGTAID-VHGFGETHPLVATGPNTREPQNRRVEIIL 379 >gi|183220368|ref|YP_001838364.1| hypothetical protein LEPBI_I0964 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910483|ref|YP_001962038.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775159|gb|ABZ93460.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778790|gb|ABZ97088.1| Hypothetical protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 229 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 5/140 (3%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + G + V+ E + +I F S P+ ++ K+G+ + Sbjct: 86 EEVGGSLVAKGVELKRIEDDEKRLRELLIIIDGDVAFPSGKSTLTPKAKELIAKVGDAME 145 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHH 318 E I GHTD+ N +LS +R+ S + L + ++E+R ++ G+A Sbjct: 146 AYPETNCRIGGHTDSV---GAFSMNLKLSKERSQSVKRELKLVHKIAEERFKEVDGYADQ 202 Query: 319 RLKIASDPMNSANRRIDILV 338 + + + NRR +I V Sbjct: 203 QKIVDTMLAEKKNRRTEIYV 222 >gi|170720328|ref|YP_001748016.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169758331|gb|ACA71647.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 230 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ P L I L + +S+ GHTD+ N LS RA+S Sbjct: 126 FEFDSARLTPADKERLNTISTRLKQEAPSARLSVTGHTDSV---GSDSYNQNLSERRAHS 182 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L++SGV + G + + + NRR +I +E Sbjct: 183 VTDYLVESGVPRASFVSVVGAGETQPVADNATADGRSMNRRTEIKIER 230 >gi|93006911|ref|YP_581348.1| OmpA/MotB [Psychrobacter cryohalolentis K5] gi|92394589|gb|ABE75864.1| OmpA/MotB [Psychrobacter cryohalolentis K5] Length = 217 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ A+++ ++G GV + G I ++ + F + Sbjct: 74 MERQARQLEQQMAGT-------GVTVKPNANG-NIDLV-MPGSITFSFDDATLNNSFKPT 124 Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + + I+I GHTD+ + N +LS DRAY+ L GV+ +RI+ Sbjct: 125 LDKLAATMNEYNQNTITIAGHTDS---KGTDAYNMKLSRDRAYAVANYLSARGVASNRIN 181 Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 + + R ++ NRR+++ V Q Sbjct: 182 -VVAYGESRPVADNNSEFGRQQNRRVELTVNAPQ 214 >gi|260885301|ref|ZP_05734718.2| lipoprotein PG3 [Prevotella tannerae ATCC 51259] gi|260852896|gb|EEX72765.1| lipoprotein PG3 [Prevotella tannerae ATCC 51259] Length = 234 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 8/134 (5%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + + +TG+ + + +F + L + L + + G+TD Sbjct: 90 VIKDDKTGLTYVKVTFPSGLLFQTGQDVLSSSARNDLATFAKNLTS-DMDLYVYGYTDNQ 148 Query: 276 PFRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328 +R + N LS RA S L +G+S ++ ++ GF ++D Sbjct: 149 GWRGASASESMNKNQVLSEQRANSVSSYLRSNGISSSQMKEVKGFGESNPVASNDSSTGR 208 Query: 329 SANRRIDILVEDRQ 342 NRR+++ V + Sbjct: 209 EQNRRVEVYVMPSK 222 >gi|215433411|gb|ACJ66671.1| OmpA domain protein [Myxococcus fulvus HW-1] Length = 615 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289 F+ + + + +L + V+ E+ + + HTD F + N RLS Sbjct: 496 MGKVFFEPTQARIQKRSFELLDWVARVIREHPEIPLVVVGAHTDDRGFPDA---NRRLSQ 552 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + Q L+ ++ +R+ + G+ R ++ N NRR++ L+ D Q Sbjct: 553 ARAEAVRQYLIGRDIAPERLKAL-GYGQERPIDSNATSNGRENNRRVEFLLADPQ 606 >gi|323345464|ref|ZP_08085687.1| lipoprotein PG3 [Prevotella oralis ATCC 33269] gi|323093578|gb|EFZ36156.1| lipoprotein PG3 [Prevotella oralis ATCC 33269] Length = 229 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K+++ + V + V+ V T G+ + + +F + + + L K Sbjct: 74 MDKVAAETAAQVKNAKVEQV---TDANGLKAVKVTFDSGILFATNKAELNQSSKNELAKF 130 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + + + I GHTD++ I N LS RA S L GVS + + G Sbjct: 131 STVLKKNADCYVDIYGHTDSTGNDGI---NIPLSNQRAQSVVAYLENCGVSASQFKNVVG 187 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 ++D + NRR+++ + Q Sbjct: 188 KGSSDPVASNDTKSGRQLNRRVEVYMYASQA 218 >gi|209809406|ref|YP_002264944.1| putative outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] gi|208010968|emb|CAQ81375.1| putative outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] Length = 185 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 13/168 (7%) Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 S+++ A+K ++ L+ ++ D+I G + + I+ Sbjct: 19 QSTSEDETTAIKSTPTIESFITYHHDELNAIITDDI--GSVAQVNDE----IIVLLNGDT 72 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S + E+ L ++ ++L + + I GHTD+ + N LS RA S Sbjct: 73 SFDSGSIVIKSESKDALTQLAQLLNNKPRSEVFIAGHTDS---SGSKQFNTSLSNKRANS 129 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 +L + GV +RI+ GF + + NRRI+I + Sbjct: 130 VLALLEQKGVDANRIN-TYGFGEAEPIASNMNANGRKKNRRIEIRITP 176 >gi|77457448|ref|YP_346953.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77381451|gb|ABA72964.1| putative OmpA family protein [Pseudomonas fluorescens Pf0-1] Length = 240 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 8/124 (6%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276 E +I++ D +FD S P L + + L ++ V I + GHTD+ Sbjct: 120 EPAPQTEVITLND-AGNVLFDFDKSDLKPAAKSQLDTLMDKLRNADVVSIKVIGHTDS-- 176 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRI 334 + N LS RA S + L+ G++ ++++ G +D + NRR+ Sbjct: 177 -KGSDAYNQALSERRASSVAEYLLSQGLAPNKLTS-EGRGESEPVADNNTDEGRAQNRRV 234 Query: 335 DILV 338 ++ + Sbjct: 235 ELHI 238 >gi|149194324|ref|ZP_01871421.1| Thrombospondin type 3 repeat:OmpA/MotB [Caminibacter mediatlanticus TB-2] gi|149135499|gb|EDM23978.1| Thrombospondin type 3 repeat:OmpA/MotB [Caminibacter mediatlanticus TB-2] Length = 209 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++K+ E+L + I + GHTD + N +LS RA + Sbjct: 101 FDFNKWNVKKIYYPQIKKVAEILKANPNLKIEVAGHTDN--IGSAKY-NLKLSQKRAEAV 157 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 ++L+ ++ +RI G+ + + + NRR++I+ Sbjct: 158 KKILVNVYHINPNRIVA-RGYGEKYPLVPNTTSTNRALNRRVEII 201 >gi|237740939|ref|ZP_04571420.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|229430983|gb|EEO41195.1| outer membrane protein [Fusobacterium sp. 4_1_13] Length = 147 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L+ I E + + I+I GHTD+ + A N++ Sbjct: 18 TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 74 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 75 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 132 >gi|294638308|ref|ZP_06716561.1| OmpA family protein [Edwardsiella tarda ATCC 23685] gi|291088561|gb|EFE21122.1| OmpA family protein [Edwardsiella tarda ATCC 23685] Length = 219 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R++ N RLS RA S L+ GV+ RI + G Sbjct: 142 QKTAVNVVGYTDSTGSRDL---NMRLSQQRADSVASALITQGVAAGRI-RTIGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|323525290|ref|YP_004227443.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323382292|gb|ADX54383.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 168 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 ++ N G+ G+ + + T +FD + S P+ V+ + +L S Sbjct: 27 DTEMSLNKAAGIEVAPVANGVAVKL---PETALFDFNKSEVRPDASAVVDRSAVLLKRSK 83 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + I + G+TD + N +LS RA + L+ GV +RI + G A++ + Sbjct: 84 KPIIVEGYTDN--VGTLEY-NQQLSEARAVAVGYALVARGVPMERI-RTKGNAYNNPVAS 139 Query: 324 SDP--MNSANRRIDILV 338 +D + NRR +I+V Sbjct: 140 NDTPEGRALNRRTEIVV 156 >gi|255067633|ref|ZP_05319488.1| membrane protein, OmpA family [Neisseria sicca ATCC 29256] gi|255048107|gb|EET43571.1| membrane protein, OmpA family [Neisseria sicca ATCC 29256] Length = 546 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 ++I++ + +F+ ++ + + +H I + GHTD Sbjct: 429 VVITL---DSLALFETGQFELKNNANKALIGALKAIESHPDTRILVEGHTDNV---GNPV 482 Query: 283 DNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 N +LS RA S L+ S V E R + G + + + NRR++I++ Sbjct: 483 SNQQLSEKRAQSVKDWLVISSNVPESRFE-VKGLGDTKPIADNQTEEGKAKNRRVEIILI 541 Query: 340 D 340 Sbjct: 542 P 542 >gi|34558375|ref|NP_908190.1| putative flagellar motor protein [Wolinella succinogenes DSM 1740] gi|34484094|emb|CAE11090.1| HYPOTHETICAL PROTEIN-PUTATIVE FLAGELLAR MOTOR PROTEIN [Wolinella succinogenes] Length = 261 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 21/231 (9%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 + + L ++ + +E + S L + E F P Sbjct: 28 MSLLLTFFILLLSMATFDAKKLTEAEGSIQGALSILPGGLKTEPGKNRIQQLAEITFTPE 87 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 ++E Q++AK S + + + G ++ + +F Sbjct: 88 SAEEINRVESLFMEFQEMAKVAEGPSSAVGSGS-----------EGFIVRL---PAALLF 133 Query: 238 DKSSSIPL-PETIVVLQKIGEVLAHSTEVISIR--GHTDASPF-RNIARDNWRLSLDRAY 293 + + + ++++ E++ + + + GHTD P +D L+ RA Sbjct: 134 KEGGIEVENSDGFLFVKRMAEIVNRLPKDVHVEVRGHTDTLPLPAQAPQDKLELTAKRAL 193 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSA-NRRIDILVEDRQ 342 S ++L+K G+ RI+ + G A P NRR+DI + ++ Sbjct: 194 SVSKLLVKEGIDPKRITTV-GRGDQDPLTHARTPEAQESNRRVDIYLYPKE 243 >gi|332667773|ref|YP_004450561.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336587|gb|AEE53688.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 603 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+I LP + +L ++ ++ + I+GHTD+ N LS RA S Sbjct: 499 FKTGSAILLPSSKKILDQVAALMNRYPAYKLDIQGHTDSQ---GKEDFNLSLSKKRAKSC 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 Y L+ + RI GF + ++ NRR++ +++ +Q Sbjct: 556 YDYLLLRSIDAKRIEH-EGFGETKPIASNKTPQGRVQNRRVEFVLDVKQ 603 >gi|146308664|ref|YP_001189129.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145576865|gb|ABP86397.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 218 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 213 KGVLFETTRTGILISII---DQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAH-ST 263 + T G + + D M F +S+ L + V + Sbjct: 83 QEAKLRQTLQGTGVQVQRNGDDLKLIMPGNITFASNSADISSSFYPTLNSLVLVFKEFNK 142 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321 ++I GHTD++ N LS RA S L +GV RIS G + Sbjct: 143 NGVNIVGHTDST---GSQELNQSLSSRRAQSVANYLTANGVPGQRISA-YGAGPSQPIAS 198 Query: 322 IASDPMNSANRRIDI 336 A+D + NRR++I Sbjct: 199 NATDAGRAQNRRVEI 213 >gi|90022262|ref|YP_528089.1| OmpA family protein [Saccharophagus degradans 2-40] gi|89951862|gb|ABD81877.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 225 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G + R G + ++ FD + + VL + VL + I + G Sbjct: 97 LQGTGVQVRREGNNLFLV-MPGNITFDTAQYSIRSQFYEVLDSVAVVLKKYDKTAILVSG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD R + N LS RA S LM+ GV+ R++ + G+ + ++D Sbjct: 156 HTDN---RGSSDYNQTLSEQRAGSVKAYLMQKGVAAGRVNSV-GYGYRYPVASNDSAAGR 211 Query: 331 --NRRIDILVEDRQ 342 NRR+++ +E + Sbjct: 212 EQNRRVELKLEPIE 225 >gi|330982864|gb|EGH80967.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 137 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIR 269 + + + T G L++ D +FD + + P + K+ L + + + + Sbjct: 1 MKNSLNAKQTERGTLVTFGD----VLFDYNKAELKPTAQGDIGKLAGFLQENPDRKVIVE 56 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G+TD++ A N LS RA S L++ GV RI + G + +S+ Sbjct: 57 GYTDST---GSASYNQSLSERRANSVRMALVRMGVDPARIVTMGYGKEYPVADNSSNSGR 113 Query: 329 SANRRIDILVED 340 + NRR+++ + + Sbjct: 114 AMNRRVEVTISN 125 >gi|225025598|ref|ZP_03714790.1| hypothetical protein EIKCOROL_02500 [Eikenella corrodens ATCC 23834] gi|224941636|gb|EEG22845.1| hypothetical protein EIKCOROL_02500 [Eikenella corrodens ATCC 23834] Length = 183 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 + ++ + N P ++ L +S+ S L + +G T T Sbjct: 1 MPQTASDASNASAPAADEQASAVASASSALSAQGNSLSAQGSNLSS----QGSGLSATET 56 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 G I I + +FD + PE LQK +++ VI I GHTD+ + Sbjct: 57 GFNIEIN-LSSDVLFDFDKAELKPEADADLQKAADIIRQKGQGVILITGHTDS---KGSD 112 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRR 333 N RLSL RA + G+ ++ ++ G R + +P + NRR Sbjct: 113 AYNQRLSLARAQAVKNWFEAKGLQQN--YQLEGLGATRPIAPNTHPDGSDNPEGRAQNRR 170 Query: 334 IDILV 338 ++I+V Sbjct: 171 VEIIV 175 >gi|323498433|ref|ZP_08103429.1| outer membrane protein A precursor [Vibrio sinaloensis DSM 21326] gi|323316506|gb|EGA69521.1| outer membrane protein A precursor [Vibrio sinaloensis DSM 21326] Length = 322 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ PE+ +L ++ + + + + G+TD A N +LS R Sbjct: 210 DSGSFALNSTELKPESKQILNELVVFMNEYPQANVEVVGYTDT---SGAAAYNQKLSEKR 266 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A S L G+ RI+ + G + +++ NRR++I V Sbjct: 267 AQSVSDALQAEGIDASRIT-VRGEGENNPIASNETKEGRVQNRRVEITV 314 >gi|253997300|ref|YP_003049364.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8] gi|253983979|gb|ACT48837.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8] Length = 217 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 16/210 (7%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + +E K + + + + + KR ++ Sbjct: 20 ANMTETQKGTAKGAAIGAGAGAVVGAIAGKGKGAAIGAAVGAAAGAVAGNVWTKRQEEQK 79 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++ +G + +T + + D + FD + VL Sbjct: 80 RQMEEATAGTGVG------VTQTADNRLKL---DIPSDISFDVGRADIKANFRAVLDTFA 130 Query: 257 EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L ++ +++ GHTD + + LS++RA S ++ GV RI+ I G Sbjct: 131 TSLVNNPASNVTVIGHTDNTGSDAVNNP---LSVNRAASVRDYVVARGVQHSRIT-IEGR 186 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQG 343 +A+D + NRR++I V + G Sbjct: 187 GAREPLVANDTAANRAKNRRVEIFVAEPAG 216 >gi|237728863|ref|ZP_04559344.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2] gi|226909485|gb|EEH95403.1| OmpA/MotB domain-containing protein [Citrobacter sp. 30_2] Length = 220 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++G TR+G I I++ N FD SS+ P L + VL + +++ Sbjct: 90 EKMQGTGVSVTRSGDNI-ILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYNKTAVNV 148 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 G TD++ N RLS RA S L+ GV+ +RI + G ++ Sbjct: 149 LGFTDST---GSQDLNMRLSQQRADSVASALITQGVAANRI-RTQGMGPANPIASNSTAE 204 Query: 329 --SANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 205 GKAQNRRVEITLSPIQ 220 >gi|307637506|gb|ADN79956.1| Flagellar motor rotation protein [Helicobacter pylori 908] gi|325996095|gb|ADZ51500.1| Flagellar motor rotation protein [Helicobacter pylori 2018] gi|325997691|gb|ADZ49899.1| Flagellar motor rotation protein [Helicobacter pylori 2017] Length = 257 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|238918002|ref|YP_002931516.1| outer membrane lipoprotein [Edwardsiella ictaluri 93-146] gi|238867570|gb|ACR67281.1| inner membrane lipoprotein YiaD [Edwardsiella ictaluri 93-146] Length = 219 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R++ N RLS RA S L+ GVS RI + G Sbjct: 142 QKTAVNVVGYTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRI-RTIGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 + + NRR++I + Sbjct: 198 ATNSTAAGKAQNRRVEITL 216 >gi|307826004|ref|ZP_07656218.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307732979|gb|EFO03842.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 266 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 90/258 (34%), Gaps = 12/258 (4%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 Q P + S ++I L + + S + + + N + ++ Sbjct: 3 PQTPFQPSWLSRIPLVLLSALMTACAPSVNMSLERARSDYQQAANDPAVKADASADLFAA 62 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + E L++ K+ ++L+ K + Sbjct: 63 EKLLQKAETSWQEDEDSEEIDHLSYLTSRKVDLARATASQTASKRAFEELSAK-RDEIRL 121 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTE 264 D + + + GIL+++ D +FD + S ++ + + E L H+ Sbjct: 122 KARDAEIARLKAKKVPQGILVTLGD----VLFDTARSDLKAGSLQNIYPLVEYLKVHADT 177 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 ++ I GHTD + N +LS RA + L+ +GV+ +RI+ G + Sbjct: 178 MVKIEGHTDNQ---GSSDYNAQLSQRRAEAVRNFLVTNGVAPERITA-QGMGKDYPIATN 233 Query: 325 DPMNSA--NRRIDILVED 340 NRR+++ + D Sbjct: 234 SSAAGRQQNRRVEVTITD 251 >gi|269137375|ref|YP_003294075.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202] gi|267983035|gb|ACY82864.1| putative outer membrane lipoprotein [Edwardsiella tarda EIB202] gi|304557476|gb|ADM40140.1| Outer membrane protein [Edwardsiella tarda FL6-60] Length = 219 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R++ N RLS RA S L+ GVS RI + G Sbjct: 142 QKTAVNVVGYTDSTGSRDL---NMRLSQQRADSVASALIVQGVSAGRI-RTIGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 + + NRR++I + Sbjct: 198 ATNSTAAGKAQNRRVEITL 216 >gi|218660571|ref|ZP_03516501.1| outer membrane lipoprotein [Rhizobium etli IE4771] Length = 196 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD P L + VL I + G Sbjct: 66 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNG 124 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328 HTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 125 HTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAGR 180 Query: 329 SANRRIDILV 338 + NRR++I + Sbjct: 181 AQNRRVEIQI 190 >gi|146344294|ref|YP_001202150.1| hypothetical protein pQBR0404 [Pseudomonas fluorescens SBW25] gi|146188106|emb|CAM96436.1| hypothetical protein pQBR0404 [Pseudomonas fluorescens SBW25] Length = 220 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ P L I L + I GHTD + + +N LS RA + Sbjct: 117 FATASADLQPAAFQGLSAIATALKDQKDLRLEITGHTDGT--GSRQFNN-VLSYARAQAV 173 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 Q L +GV ++ + G + NRR++I + +QG Sbjct: 174 AQYLYAAGVPA-QVIAVRGVGPSMPVATDATTQGRAQNRRVEIQI--KQG 220 >gi|313681736|ref|YP_004059474.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154596|gb|ADR33274.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 15/253 (5%) Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 PE + K + + + ++++ +T Sbjct: 10 PECPAGEKWAVPTADFFSLLLALFIALFAIASVNKEKIKAVKEEFVKIYDYAPAPQEITP 69 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + + + D + K + + +KI L Sbjct: 70 VVDMVSENNPTPDATANAAGSAPVTDGGSLLVGAPPTKSTEAASEAIQKIQQDLKNASMG 129 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV-LQKIGEVLAHST--EVI 266 + + + G+L+ + + F +++ E + + L+++ +++ I Sbjct: 130 SGP----LDQSMDGVLLKL---PTSIPFKGANATIDNEELHLFLRRVTDIINTLPPTVDI 182 Query: 267 SIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322 SIRG+TD P +DN LS RA + + L+++GV+ +R+ +GF + Sbjct: 183 SIRGYTDNQPLPPGAGYKDNIELSSRRAETVMRELIRNGVAPERL-STAGFGAAKPVAEN 241 Query: 323 ASDPMNSANRRID 335 ++ + NRR++ Sbjct: 242 TTEENRAKNRRVE 254 >gi|71898965|ref|ZP_00681131.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|71731211|gb|EAO33276.1| OmpA/MotB [Xylella fastidiosa Ann-1] Length = 375 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + VL++ E+L + + + GHTD++ A N +LS RA Sbjct: 272 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 328 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 Y L +G+ R+ G+ + + NRR ++ V++ Sbjct: 329 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 375 >gi|260555512|ref|ZP_05827733.1| outer membrane protein [Acinetobacter baumannii ATCC 19606] gi|260412054|gb|EEX05351.1| outer membrane protein [Acinetobacter baumannii ATCC 19606] Length = 255 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 17/153 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + Q+L + S L + + ++ + II+ F+ S++ Sbjct: 117 QSFQNLVQPPYQLFSQLSVNQAEQKII----DDALKNRIIE------FESGSAVLTEAGQ 166 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L ++ L + I GHTD+ A N +LS DRA + L+ + D Sbjct: 167 KILDEMAVALNKVGGKKVKIVGHTDS---SGDATKNLKLSQDRALAVKNYLISKNIPADH 223 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 + G + + NRRI+ V Sbjct: 224 L-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255 >gi|197116786|ref|YP_002137213.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] gi|197086146|gb|ACH37417.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] Length = 459 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE + +G+ + I GHTD + N LS RA + Sbjct: 228 FDIDKAEIRPEYRDEVATVGKFMKQYPTTTAVIEGHTDN--VGDPQY-NLDLSKRRAQAV 284 Query: 296 YQVLMKS-GVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339 L+ + G+ R+ ++ G A +D ANRRI+ +++ Sbjct: 285 VDYLVDNYGIERSRLEARGFGMARPIATNNTDEGRQANRRIEAIID 330 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + K+GE + I GHTD + N +LS RA +A Sbjct: 352 FDSGKADIKPQYRDEMAKVGEYMNKYPTTTAVIEGHTDNV---GGSDYNMKLSQRRAENA 408 Query: 296 YQVLMKS-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 Q L+++ G+ + R+S G+ + R ++ + NRRI+ +++ Sbjct: 409 VQYLVQNFGIDKSRLSA-KGYGYTRRIAYNSTPEGRAKNRRINAVID 454 >gi|332087513|gb|EGI92641.1| ompA family protein [Shigella boydii 5216-82] Length = 318 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 + I + + D E T + + + + +FD + T V++ + Sbjct: 167 EHIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 225 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 226 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 281 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 282 LGESQPAATNDTPQGRAVNRRVEISLVPR 310 >gi|254784323|ref|YP_003071751.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Teredinibacter turnerae T7901] gi|237683781|gb|ACR11045.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Teredinibacter turnerae T7901] Length = 373 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%) Query: 216 LFETTRTGILISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + G +++ + + + FD S++ PE ++K+ + +A + I+GH Sbjct: 238 RLKVDDRGCPVTLSETISINLKVNFDSGSAVVKPEFFSEIRKVADFMAQYENTRVEIQGH 297 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA 330 TD A N LS RA + VL+ GV+ R+ G+ + Sbjct: 298 TDT---SCAAAYNKSLSQRRASAVAAVLISEYGVAASRVDA-RGYGEEQPIADESTAAGR 353 Query: 331 --NRRI 334 NRR+ Sbjct: 354 LANRRV 359 >gi|149371103|ref|ZP_01890698.1| OmpA domain protein [unidentified eubacterium SCB49] gi|149355889|gb|EDM44447.1| OmpA domain protein [unidentified eubacterium SCB49] Length = 466 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 224 ILISIIDQRN----TPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFR 278 I + I+DQ N T +FD + S E+ ++ + +++ T I GH+D+ Sbjct: 347 ITVEIMDQINEYSRTILFDTNKSTIRKESHAAIRSMIDIMNEYKTANFLIEGHSDS---S 403 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A N LS RA + L GV R++ GF R K ++ NRR+++ Sbjct: 404 GSASYNLELSKKRAAAVKTFLESKGVDASRLTS-EGFGETRPKASNSTAAGRQENRRVEV 462 Query: 337 LV 338 + Sbjct: 463 SL 464 >gi|71276570|ref|ZP_00652844.1| OmpA/MotB [Xylella fastidiosa Dixon] gi|71901217|ref|ZP_00683319.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|170730957|ref|YP_001776390.1| outer membrane protein [Xylella fastidiosa M12] gi|71162641|gb|EAO12369.1| OmpA/MotB [Xylella fastidiosa Dixon] gi|71729028|gb|EAO31157.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|167965750|gb|ACA12760.1| outer membrane protein [Xylella fastidiosa M12] Length = 375 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + VL++ E+L + + + GHTD++ A N +LS RA Sbjct: 272 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 328 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 Y L +G+ R+ G+ + + NRR ++ V++ Sbjct: 329 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 375 >gi|239832093|ref|ZP_04680422.1| OmpA family protein [Ochrobactrum intermedium LMG 3301] gi|239824360|gb|EEQ95928.1| OmpA family protein [Ochrobactrum intermedium LMG 3301] Length = 260 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G TR G I I++ ++ FD + L + VL + ++ + G Sbjct: 129 LQGTGVSVTRNGDQI-ILNMPSSITFDTDQDQVKSQFYPTLNSVAIVLRKFNQTLVDVYG 187 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ N LS RA S L G+ R + G+ + + Sbjct: 188 HTDST---GSVSHNQALSQRRAASVASYLGSQGIDPRRF-AVIGYGASQPVATNATPEGR 243 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + + Sbjct: 244 AQNRRVEIQISPLRA 258 >gi|146308665|ref|YP_001189130.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145576866|gb|ABP86398.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 222 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G +I +I F S+ L + + I + G Sbjct: 91 MQGTGVEVQRQGDVIQLI-MPGNITFATDSAEIASSFYAPLNNLANSFRQYNQNSIEVVG 149 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ + LS RA S L+ GV R+ G + ++ Sbjct: 150 HTDSTGSHSYNMS---LSQRRAQSVASYLIAQGVDGSRV-STRGMGPDQPVASNATAEGR 205 Query: 329 SANRRIDILVEDRQG 343 + NRR+++ + G Sbjct: 206 AQNRRVEVTLRPLPG 220 >gi|56698398|ref|YP_168771.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680135|gb|AAV96801.1| OmpA domain protein [Ruegeria pomeroyi DSS-3] Length = 221 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 10/146 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L + G+ T +++S+ N FD SS P LQK+ Sbjct: 82 LDKQAAELRQELANDGITITNTGDRLIVSV---PNDITFDTDSSTVRPGLRSDLQKVAAH 138 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + GHTD+ A N LS RA + +L GV+ DRIS + G Sbjct: 139 LVRYPQSSVQVIGHTDSD---GEAAYNQGLSERRAGAVADILQAGGVTYDRISTL-GMGE 194 Query: 318 HRLKIAS--DPMNSANRRIDILVEDR 341 + ++ + NRR++I+V R Sbjct: 195 NSPIASNLTPEGKARNRRVEIVVIPR 220 >gi|313674297|ref|YP_004052293.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312940995|gb|ADR20185.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 665 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 11/132 (8%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265 VADN + E T+ + + F+ +S + +++ +L K+ V+ + Sbjct: 536 VADNNGCPEITEETKE----VLKEALEGIEFELASDVIRAQSLPILDKVVTVMQENPDYK 591 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I GHTD N LS RA + + LM G++ R+ + G+ + ++D Sbjct: 592 LKISGHTDNQ---GDDDANLLLSHKRAQATKKYLMDQGIAILRLDAV-GYGEMQPIESND 647 Query: 326 P--MNSANRRID 335 + NRR++ Sbjct: 648 TAEGRAKNRRVE 659 Score = 43.3 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ I + L + +L + + + I GHT P + +N RLS +RA + Sbjct: 402 FVNNADIFRSDAYYELDRFASLLQSNPQMQVEIIGHTAQLP---LEAENDRLSYNRAKAV 458 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----RRIDILV 338 K V DR+ +I G ++ + N RI I + Sbjct: 459 ADYFEKKNVHPDRL-RIKGAGQKLAFSSNMDVALKNGIELEDRITIKI 505 >gi|532658|gb|AAA99311.1| antigen [Treponema pallidum] Length = 416 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 10/143 (6%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L + D + T G+ ISI FD S+ P L+KI E+L Sbjct: 281 ELQETLKDLHMPDAKVRETEEGVTISI----ENVQFDADSASLAPSEYEKLRKIAELLRA 336 Query: 262 STEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + GH + R +D R+S +RA + L + GV + G + Sbjct: 337 FPDRELLVSGHAER---RGSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQS 393 Query: 321 KIASDPMNSA--NRRIDILVEDR 341 +D + NRR++I + + Sbjct: 394 IAPNDSEDGRRKNRRVEITIISK 416 >gi|13472165|ref|NP_103732.1| hypothetical protein mll2368 [Mesorhizobium loti MAFF303099] gi|14022910|dbj|BAB49518.1| mll2368 [Mesorhizobium loti MAFF303099] Length = 167 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-----IRGHTDASPFRNIARDNWRLSLDR 291 F S+ L + + L +S + GHTDA+ R N LS R Sbjct: 65 FALDSAQLDQTARAELDEFAKALKD--NRLSTFSFVVEGHTDAT---GPDRYNQDLSQRR 119 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 A S L +GV R+ I G ++A +P + NRR+++ + Sbjct: 120 AQSVAAFLEANGVESVRLEAI-GLGKSHPRVA-NPYDPVNRRVEMRIRT 166 >gi|323159967|gb|EFZ45936.1| ompA family protein [Escherichia coli E128010] Length = 250 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 ++I + + D E T + + + + +FD + T V++ + Sbjct: 99 EQIRQPVLRAIRDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 157 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 158 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 213 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR++I + R Sbjct: 214 LGESQPAATNDTPQGRAVNRRVEISLVPR 242 >gi|300714997|ref|YP_003739800.1| outer membrane protein [Erwinia billingiae Eb661] gi|299060833|emb|CAX57940.1| Outer membrane protein [Erwinia billingiae Eb661] Length = 564 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I+ + +FD ++ P ++ +L + ++ A +I + GHTD++ N + Sbjct: 426 IVRLDSLSLFDTGKAVLKPGSLKMLVTALVDIKARPGWLIVVAGHTDSTGNVLA---NQQ 482 Query: 287 LSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA + +L S VS + GF R +D + NRR++I + + Sbjct: 483 LSLTRADALRDWMLSTSDVSPT-CFAVQGFGASRPIATNDTPAGRALNRRVEISLVPQ 539 >gi|159025752|emb|CAO02050.1| outer membrane protein A [Bordetella trematum] Length = 165 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 8/110 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD + PE +L ++ + I GHTD+ A N +LS+ RA + Sbjct: 58 FFDFDKATLKPEGRQLLDQVAQQAKAINLETIIAVGHTDS--IGTEAY-NMKLSVRRADA 114 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDR 341 L+ G+ +RI G + ++ + NRR++I +V R Sbjct: 115 VKAYLVGQGIDPNRIY-TEGKGEAQPIASNKTAEGRARNRRVEIEIVGSR 163 >gi|152971688|ref|YP_001336797.1| hypothetical protein KPN_03169 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956537|gb|ABR78567.1| hypothetical protein KPN_03169 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 567 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + + + + +FD + T V++ + + A +I + G+TD + Sbjct: 420 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 476 Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + N +LSL RA + +L S + + G +D +ANRR++I Sbjct: 477 KKANQQLSLRRAEAVRDWMLQTSDIPAT-FFAVQGLGESHPAATNDTPEGRAANRRVEIS 535 Query: 338 VEDR 341 + R Sbjct: 536 LVPR 539 >gi|300693692|ref|YP_003749665.1| outer membrane protein; ompa/motb domain [Ralstonia solanacearum PSI07] gi|299075729|emb|CBJ35033.1| putative outer membrane protein; OmpA/MotB domain [Ralstonia solanacearum PSI07] Length = 280 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 78/254 (30%), Gaps = 19/254 (7%) Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + + + + + R + + + + + Sbjct: 35 GAPGDPAPASAATPVPGQVVAGGMVPDEATKASVLARLRELYGSANVVDQIEVGNVVSPP 94 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS--- 204 K L + + + +R++ D+A + ++ + Sbjct: 95 NWTGNVQKILSPQIKQVNRGQLNIDGTQVAMHGDVQNEAQRQQLASDMATTLGASYTIKN 154 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 GL + + L + T +I F+ S+ P+ +L ++ VL Sbjct: 155 GLRVAAVSEQSLLDQTLANRIIE---------FETGSATLTPKGRGILDEMAAVLPRLNG 205 Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I I GHTD N LS RA + L+ G ++ I G + A Sbjct: 206 RKIEIVGHTDN---SGSRAMNLNLSQTRAETVKNYLISKGAEPGTLTAI-GVGPDQPVAA 261 Query: 324 S--DPMNSANRRID 335 + D S NRRI+ Sbjct: 262 NTTDEGRSRNRRIE 275 >gi|218462138|ref|ZP_03502229.1| hypothetical conserved membrane protein [Rhizobium etli Kim 5] Length = 386 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPF--RNIARDNWRLSLD 290 +F + ++ I VL + I+I GHTD P N +N RLS Sbjct: 237 LFQSARPELTKSFEPLVASIAAVLKQNAELIGGITITGHTDNVPLQASNPLSNNQRLSEA 296 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 RA + +L SGV ++ G A + +D +ANRRI+ Sbjct: 297 RAATIASLLAASGVPTGQLKS-QGRAATQPLAGNDSREGRAANRRIE 342 >gi|207092500|ref|ZP_03240287.1| flagellar motor protein MotB [Helicobacter pylori HPKX_438_AG0C1] Length = 260 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + +I Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|182682319|ref|YP_001830479.1| OmpA/MotB domain-containing protein [Xylella fastidiosa M23] gi|182632429|gb|ACB93205.1| OmpA/MotB domain protein [Xylella fastidiosa M23] gi|307578598|gb|ADN62567.1| OmpA/MotB domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 375 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ + VL++ E+L + + + GHTD++ A N +LS RA Sbjct: 272 FDFDKSKLRPDAVAVLKEATEILRRYPDLHVEVAGHTDST---GPAAYNKKLSERRAKVV 328 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 Y L +G+ R+ G+ + + NRR ++ V++ Sbjct: 329 YDYLRNNGIDASRLIGPVGYGETHPIDTNKTPAGRAKNRRTELNVQN 375 >gi|146276274|ref|YP_001166433.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554515|gb|ABP69128.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 642 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 7/122 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I + F+ S+ P L + EV + I GHTD+ Sbjct: 487 RIRRVLAGQKITFEPGSAEIDPSARGTLDGLAEVFKDCKGMPLEISGHTDSQ---GSEGG 543 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 N LS RA + L V R+ + G+ R + ANRRI+ + Sbjct: 544 NKALSQARAEAVLMALQGRRVDVGRMKAV-GYGEERPIADNRDEAGREANRRIEFTLLGD 602 Query: 342 QG 343 G Sbjct: 603 DG 604 >gi|193215633|ref|YP_001996832.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089110|gb|ACF14385.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110] Length = 398 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+I + +I ++ AH+ S+ GHTD+ A N LS RA S Sbjct: 297 FDVGKATLRPESIGPINEIYSLMKAHADIKFSVEGHTDSD---GDASSNQTLSEQRAKSV 353 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L++ G+S DR+ K GF + +D + NRR++ + Sbjct: 354 MDELIRMGISADRL-KFKGFGESKPVDTNDTPEGKANNRRVEFV 396 >gi|83646323|ref|YP_434758.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83634366|gb|ABC30333.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 483 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 97/294 (32%), Gaps = 10/294 (3%) Query: 54 INATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 I+ T + ++ + K L Q+ ++S N + K + Sbjct: 191 IDDLAPKTMEMAQEEYQLALKTLDADRTDTERAQSHAQKSLWNVMRAEYIADTVKYFDES 250 Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 ++ YQ+ N Q N D + ++ EN Sbjct: 251 DFDEEDKVLWYQQQLATAVGPINQQLPFDQPNKEVVRQVNANIQGLMVDRDSALLALENA 310 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 + ++ ++ +K + T V ++ + R + I Sbjct: 311 KTREMRVASEKDELMAQQQREDQRKQAITAKFAVVQSLFTDKEADVYRQKDNVLIRAHGF 370 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 F S E ++ KI E + + + GHTD R N LS RA Sbjct: 371 N--FPSGKSEIQGENFALVNKIIEAVKEFPNAQVVVSGHTDN---RGSTELNQGLSQQRA 425 Query: 293 YSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 ++L + G + D+I+ + G+ R +D M + NRR+++L+ + G Sbjct: 426 EEVAKMLNEIGRIPSDKITAM-GYGEQRPVSTNDTMEGRADNRRVEVLIVNEGG 478 >gi|307293986|ref|ZP_07573830.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] gi|306880137|gb|EFN11354.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] Length = 226 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 15/162 (9%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDK 239 + +K L ++ G D K + +T +G+ + I D N + F Sbjct: 60 RTEKILGAGIGAVAGAGIGAYMDAQEKKLREQTAGSGVDV-IRDGDNLVLRMPSGITFAT 118 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 SS P+ L + VLA + I + GHTD+ N LS RA + Sbjct: 119 DSSAVQPQFQPTLNDVASVLAQYPKTYIDVYGHTDS---DGTDVYNQGLSERRAQAVGDY 175 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 L GV RI GF + ++ ++NRR++I + Sbjct: 176 LTSHGVQSARI-ATRGFGETQPIASNATAEGKASNRRVEIKI 216 >gi|319763880|ref|YP_004127817.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|330823856|ref|YP_004387159.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|317118441|gb|ADV00930.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] gi|329309228|gb|AEB83643.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 171 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD +S E +L ++G L + + GH D N RLSL R Sbjct: 64 GKLLFDFNSDAMTGERREMLVRMGHALVGVGVRALRVEGHADDQ---GSPDYNERLSLRR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 A + QVL ++G+ +RI I G+ R + S+ NRR+ ++V Sbjct: 121 AQAVAQVLAEAGIPRERID-IRGYGASRPLVIGTSEAARQENRRVALIV 168 >gi|260549981|ref|ZP_05824196.1| OmpA family protein [Acinetobacter sp. RUH2624] gi|260406973|gb|EEX00451.1| OmpA family protein [Acinetobacter sp. RUH2624] Length = 472 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + ++ + ++++ + Q ++ ++++ + L + + Sbjct: 294 GDKITLKAGDAAALEALTAKVKALVPHTEVVSAAPQTAEQSVSNSLTASQTALGSID-PN 352 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 V + + II+ F SS + +L + +L T +++ GHT Sbjct: 353 NVDVNALVKALNLQIIN------FASGSSEIPADNKAILDQAATLLNKVTSVKLNVGGHT 406 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D++ A N LS RA + L+ GV ++ G + Sbjct: 407 DST---GNAAANKALSQRRAQAVVDYLVSKGVDASKLVA-QGHGSENPVAENTTEEGRFK 462 Query: 331 NRRIDILV 338 NRRI+ V Sbjct: 463 NRRIEFSV 470 >gi|294787848|ref|ZP_06753092.1| OmpA family protein [Simonsiella muelleri ATCC 29453] gi|294484141|gb|EFG31824.1| OmpA family protein [Simonsiella muelleri ATCC 29453] Length = 217 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 8/128 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E R G I + N F L + LA E ISI GHTD++ Sbjct: 93 VEVQREGNQIKLTMPENVT-FATGRYDLSVNAQNSLNGAAQTLATYNETTISIIGHTDST 151 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N LS +RA + Q L+ GVS RI +G + ++ + NRR Sbjct: 152 ---GNDSINIPLSQNRANAVAQYLISKGVSSSRI-STAGHGASQPIASNSTAEGRAQNRR 207 Query: 334 IDILVEDR 341 ++IL+ + Sbjct: 208 VEILINPQ 215 >gi|71909465|ref|YP_287052.1| surface antigen protein [Dechloromonas aromatica RCB] gi|71849086|gb|AAZ48582.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Dechloromonas aromatica RCB] Length = 221 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + +G T+T +D + FD P VL + L + Sbjct: 83 QKAAMEQATQGTGIGVTQTADNQLKLDIPSDLSFDSGHYDINPALHAVLDRFASTLIQNP 142 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I GHTD I LS++RA + L GV+ +RI I G H Sbjct: 143 VTHVRIVGHTDNVGGDAINNP---LSVNRAAATRDYLASRGVASNRI-SIDGRGSHEPIA 198 Query: 323 ASDP--MNSANRRIDILV 338 + + NRR++I V Sbjct: 199 DNSTPAGRAKNRRVEIFV 216 >gi|110638110|ref|YP_678319.1| OmpA family peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC 33406] gi|110280791|gb|ABG58977.1| peptidoglycan-associated lipoprotein, OmpA family [Cytophaga hutchinsonii ATCC 33406] Length = 640 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + PE++ L K+ ++L H+ I + GHTD+ N LS +RA + Sbjct: 534 FFDVDKATLRPESVQELDKLVDILRHNPNLKIELSGHTDS---DGNDDHNMVLSDNRAKA 590 Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 L+ K G++ +R++ G+ + +D NRR ++ + + Sbjct: 591 VVDYLIKKGGINPNRLTW-KGYGETKPIELNDTPEHKQQNRRTEVKILSNE 640 >gi|332666790|ref|YP_004449578.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335604|gb|AEE52705.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 495 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + L + E + I + GHTD N LS RA + Sbjct: 392 FATGSEKLTGVSRYELDNLVEAMKEKKGLKIQLAGHTDDI---GEDAQNLALSQKRADAV 448 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 + L+ GV R+S GF + A+ D + NRR + Sbjct: 449 MKYLVSKGVDASRLSA-KGFGESQPVAANDSDDNRAQNRRTE 489 >gi|332297510|ref|YP_004439432.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] gi|332180613|gb|AEE16301.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] Length = 469 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 14/149 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + ++ V +N V V TGI ISI + + F S+ LP + L I E+ Sbjct: 308 VMRDVAQFVYENKVPDVTITDDYTGIQISIQNLQ----FIADSAELLPAEKLRLDTIAEL 363 Query: 259 LAHST----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L T + + GHT + + +LS++RA + + + GV + G Sbjct: 364 LKTVTADNEFSVIVEGHTASVGKPAGEQ---QLSIERAQAIISAMAQRGVDTGTFTS-KG 419 Query: 315 FAHHRLK--IASDPMNSANRRIDILVEDR 341 F A+ + NRR++IL+ + Sbjct: 420 FGGTVPVGDNATPEGRAQNRRVEILIVPK 448 >gi|209965863|ref|YP_002298778.1| outer membrane protein OmpA (probable proton motor MotY) [Rhodospirillum centenum SW] gi|209959329|gb|ACI99965.1| outer membrane protein OmpA (probable proton motor MotY) [Rhodospirillum centenum SW] Length = 281 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 13/228 (5%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 Q + + S+ + + + + ++ E + Sbjct: 52 AAQAPVAFQEAERSVQRAQSRLGSAGEAEMEHLTYLAEVRLQTARAEAQAARFREERQSL 111 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVA--DNIVKGVLFETTRTGILISIIDQRNTP 235 +++ + + ++ LA+ ++ + ++ ++ T G ++++ + Sbjct: 112 VAQRESILRSAREDQLALARTVAEEDRQRIQQLESQLQQYQARETEAGTVLTLSNIN--- 168 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ P L+ + E L + + I GHTD+ A N LS RA + Sbjct: 169 -FDLDSATLSPGDRQRLRPLVEYLRSQPDRAVLIEGHTDSQ---GPAAYNEELSQRRAEA 224 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+ G+ RI+ G +++ NRRI++ VE+ Sbjct: 225 VRDFLVDQGIQAARIT-TRGLGEGVPVASNETQAGRLQNRRIEVTVEN 271 >gi|88810246|ref|ZP_01125503.1| OmpA-OmpF family porin [Nitrococcus mobilis Nb-231] gi|88791876|gb|EAR22986.1| OmpA-OmpF family porin [Nitrococcus mobilis Nb-231] Length = 230 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR G I I++ N FD SS P L + VL Sbjct: 94 VQEAKLREKMQGTGVSVTRQGDAI-ILNMPNNVTFDIDSSSLKPAGANTLTGVAMVLKEY 152 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ GHTD++ N +LS RA S L+ GV+ +RI + +G Sbjct: 153 DQTGVNVVGHTDST---GGHAHNMKLSKKRADSVASSLIIQGVAANRI-RTAGVGPDDPI 208 Query: 322 IASDP--MNSANRRIDILVED 340 ++ + NRR++I + Sbjct: 209 ASNSTAEGRAQNRRVEITLTP 229 >gi|262042941|ref|ZP_06016085.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039658|gb|EEW40785.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 568 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 11/152 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVV 251 + + + + G V + I + + +FD + P T + Sbjct: 400 EQIRLPLLEAIRGYVPPPPPPRPVQRVAPNVIRL-----DSMSLFDTGKWVLKPGSTKRL 454 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + ++ A +I + GHTD+ + N LSL RA S + +G D Sbjct: 455 VSSLMDIKARPGWLIVVAGHTDSV---GEEKANQLLSLKRAESVRDWMRDTGDVPDSCFA 511 Query: 312 ISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + G+ R + + NRR++I + + Sbjct: 512 VQGYGESRPIATNGTPEGRALNRRVEISLVPQ 543 >gi|187923017|ref|YP_001894659.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] gi|187714211|gb|ACD15435.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 217 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 16/128 (12%) Query: 223 GILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHT 272 G I +Q + + FD +S P VL ++ + + + E+++ + GHT Sbjct: 85 GTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELVAQVVGHT 144 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSA 330 D++ N LS++RA S L + GV+ R+S G + ++ +A Sbjct: 145 DST---GQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSA-QGLGQTQPIADNNTEAGRAA 200 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 201 NRRVEIYL 208 >gi|308184601|ref|YP_003928734.1| flagellar motor protein MotB [Helicobacter pylori SJM180] gi|308060521|gb|ADO02417.1| flagellar motor protein MotB [Helicobacter pylori SJM180] Length = 257 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLIKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|292490116|ref|YP_003533011.1| putative outer membrane lipoprotein yiaD [Erwinia amylovora CFBP1430] gi|292901121|ref|YP_003540490.1| outer membrane protein [Erwinia amylovora ATCC 49946] gi|291200969|emb|CBJ48108.1| putative outer membrane protein [Erwinia amylovora ATCC 49946] gi|291555558|emb|CBA24133.1| putative outer membrane lipoprotein yiaD precursor [Erwinia amylovora CFBP1430] Length = 221 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR+G I + N FD SSS P L + VL Sbjct: 84 VQEAKLRDKMKGTGVSVTRSGDNIVLN-MPNNVTFDSSSSTLKPAGANTLTGVAMVLKEY 142 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD+ + N LS RA L+ GV+ +R+ + +G Sbjct: 143 PKTAVNVVGYTDS---SGSRQLNMNLSQQRADGVGSALIAQGVAANRV-RTNGMGPDNPV 198 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 199 ASNSSAEGKAQNRRVEITLSPLQ 221 >gi|296128006|ref|YP_003635256.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109] gi|296019821|gb|ADG73057.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109] Length = 560 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 77/280 (27%), Gaps = 11/280 (3%) Query: 65 IEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 I + P LM ++ + T+ L++ Sbjct: 104 IASSWPPVNVRLMDLARDVVLHVGADSDGEPVVAPEDWSRFRTERGTRLQMPFAAPADDV 163 Query: 125 QRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 L Q L + D+ + + + + Sbjct: 164 DALSLFFPGAPLFAQVPIIDGELP-SAVHPDDVAAAEAAAATAAARASASPSATPDVEET 222 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A + L + + L A+ E+T + + + +F S+ Sbjct: 223 APPEELDLDAVVEAPVFPLESTTAELDGAVQTIESTE---KVEVT-LGSDVLFAFDSADL 278 Query: 245 LPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 PE+ + + + LA + + GHTD N LS RA + L Sbjct: 279 TPESADAVALVAQRLAEREAGSVEVVGHTDDQA---DDTYNLDLSRRRAQAVADALEAQV 335 Query: 304 VSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 +++G + +D + NRR+ + + + Sbjct: 336 AGSGHRMRVAGRGESEPVVPNDSEENRALNRRVTVSLTSK 375 >gi|218673547|ref|ZP_03523216.1| outer membrane lipoprotein [Rhizobium etli GR56] Length = 180 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD P L + VL I + G Sbjct: 50 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNG 108 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328 HTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 109 HTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAGR 164 Query: 329 SANRRIDILV 338 + NRR++I + Sbjct: 165 AQNRRVEIQI 174 >gi|304391383|ref|ZP_07373325.1| inner membrane lipoprotein YiaD [Ahrensia sp. R2A130] gi|303295612|gb|EFL89970.1| inner membrane lipoprotein YiaD [Ahrensia sp. R2A130] Length = 219 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + VL + VL + +++ GHTD+ + N +LS R + Sbjct: 115 FNSGSADLKAQFFRVLNSVALVLKEYNKTLVNVSGHTDSD---GSDQFNQQLSERRGVNV 171 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 Q L++ G R + G+ R ++ NRR++I Sbjct: 172 AQYLVQQGTDSRRYY-VVGYGEERPIASNASAAGKEQNRRVEI 213 >gi|208434727|ref|YP_002266393.1| flagellar motor rotation protein [Helicobacter pylori G27] gi|208432656|gb|ACI27527.1| flagellar motor rotation protein [Helicobacter pylori G27] Length = 257 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDNTPLTKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|192359273|ref|YP_001981784.1| outer membrane protein A [Cellvibrio japonicus Ueda107] gi|190685438|gb|ACE83116.1| outer membrane protein A [Cellvibrio japonicus Ueda107] Length = 344 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 T I I + +F+ + S T + I +L + +++ GHTD+ + Sbjct: 221 VTEQ--RIVIDENLGGALFEFNKSEIR-NTAAIQPVIDVLLEDPSLYVNVIGHTDS---K 274 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 N RLS RA + L GVS RI K+ G + +++ + NRR++ Sbjct: 275 GSEEYNQRLSQTRANVVAKYLNSKGVSLSRI-KVFGMGEDQPVADNSTEEGRAQNRRVEF 333 Query: 337 LVEDRQ 342 ++ + Q Sbjct: 334 IISNSQ 339 >gi|110633615|ref|YP_673823.1| OmpA/MotB [Mesorhizobium sp. BNC1] gi|110284599|gb|ABG62658.1| OmpA/MotB [Chelativorans sp. BNC1] Length = 217 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + F S+ P L + VL + + + G Sbjct: 87 LQGTGVSVTRQGDYI-ILNMPSNITFATDSADIQPAFYQTLNSVALVLKRYNQTLVDVYG 145 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ + N +LS RA S L+ G R + G + ++ Sbjct: 146 HTDST---GSLQHNMQLSQRRAASVADYLIAQGTDSRRF-AVIGQGPSQPIASNATPEGR 201 Query: 329 SANRRIDI 336 + NRR++I Sbjct: 202 AQNRRVEI 209 >gi|109900555|ref|YP_663810.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] gi|109702836|gb|ABG42756.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 215 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 14/194 (7%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 +++KG + +N + + A+ + K+ L Sbjct: 29 NTQKGAGIGAIVGALIGKGTGDNDKSRYVWGAAVGALAGSAIGNYMDKQEEEFREELADS 88 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 E R G + + + F ++ VL+ + V+ + + + Sbjct: 89 G------VEVYREGDTLRLY-MPGSITFSSGNASVDSSFYPVLKDVALVINKYEKTTLMV 141 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 GHTD + N RLS RA S L+++GV R+S + G + A+ Sbjct: 142 EGHTDNT---GADDMNQRLSEARANSVKNYLVQNGVDNRRVSTL-GMGEYTPIADNATQA 197 Query: 327 MNSANRRIDILVED 340 NRR+++ + Sbjct: 198 GRQKNRRVELKIIP 211 >gi|158523264|ref|YP_001531134.1| hypothetical protein Dole_3254 [Desulfococcus oleovorans Hxd3] gi|158512090|gb|ABW69057.1| conserved repeat domain [Desulfococcus oleovorans Hxd3] Length = 2118 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR----DN 284 + P+F + ++ + + LA + I + GHTD P R +R DN Sbjct: 909 EADQRPLFASFGTQLTENDKEQVRALRQSLAGRRIKRIIVTGHTDNQPIRARSRHIFADN 968 Query: 285 WRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LSL RA S L + +RI G A++ + NRR+ + V Sbjct: 969 DALSLGRAQSVATYLQTILNLPPERIEA-EGKGDREPVASNATEAGRAENRRVAVAVVS 1026 >gi|5081414|gb|AAD39369.1|AF117974_1 outer membrane protein OprF [Pseudomonas sp. DC] Length = 343 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 237 FDFDKSVVKPNSYRDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 293 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV +R+S + G+ R A+D + NRR++ Sbjct: 294 KQVLVNQYGVGANRVSSV-GYGETRPVADNATDAGRAVNRRVE 335 >gi|296274015|ref|YP_003656646.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098189|gb|ADG94139.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299] Length = 256 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 9/179 (5%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 L+++ + + SK+ + A S ++ V + + Sbjct: 59 LDQTQDTIKRDESTNTSKDASNDADSNAQDTAAAADEMSQIAQEVNEQVSTQSEQVQITE 118 Query: 223 GILISIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRN 279 G +D ++ MF++ + KI V+ I I G+TD S F++ Sbjct: 119 GNNEFTLDIPSSIMFNEGEYNLSNKSAKNFISKIARVIRTMPQTFDIEIIGYTDRSNFKS 178 Query: 280 IA--RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 RD W LS RA S + L+K+ + ++ K+S ++ +R K + NRR++I Sbjct: 179 DTIPRDGWDLSALRAISVVKELIKNRIDPAQL-KVSAYSSYRPKSEN---AVENRRVEI 233 >gi|169633791|ref|YP_001707527.1| putative outer membrane lipoprotein [Acinetobacter baumannii SDF] gi|169796445|ref|YP_001714238.1| putative outer membrane lipoprotein [Acinetobacter baumannii AYE] gi|184157625|ref|YP_001845964.1| outer membrane protein [Acinetobacter baumannii ACICU] gi|215483907|ref|YP_002326132.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB307-0294] gi|301345916|ref|ZP_07226657.1| OmpA/MotB domain protein [Acinetobacter baumannii AB056] gi|301512888|ref|ZP_07238125.1| OmpA/MotB domain protein [Acinetobacter baumannii AB058] gi|332854748|ref|ZP_08435526.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332865708|ref|ZP_08436518.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|332874587|ref|ZP_08442488.1| OmpA family protein [Acinetobacter baumannii 6014059] gi|169149372|emb|CAM87256.1| putative outer membrane lipoprotein [Acinetobacter baumannii AYE] gi|169152583|emb|CAP01565.1| putative outer membrane lipoprotein [Acinetobacter baumannii] gi|183209219|gb|ACC56617.1| Outer membrane protein [Acinetobacter baumannii ACICU] gi|213986628|gb|ACJ56927.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB307-0294] gi|322507933|gb|ADX03387.1| Putative outer membrane lipoprotein [Acinetobacter baumannii 1656-2] gi|323517525|gb|ADX91906.1| Outer membrane protein [Acinetobacter baumannii TCDC-AB0715] gi|332727834|gb|EGJ59237.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332735135|gb|EGJ66217.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|332737225|gb|EGJ68151.1| OmpA family protein [Acinetobacter baumannii 6014059] Length = 255 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S++ +L ++ L + I GHTD+ A N +LS DRA + Sbjct: 154 FESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDS---SGDATKNLKLSQDRALAV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 L+ + D + G + + NRRI+ V Sbjct: 211 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255 >gi|317048541|ref|YP_004116189.1| DotU family type IV / VI secretion system protein [Pantoea sp. At-9b] gi|316950158|gb|ADU69633.1| type IV / VI secretion system protein, DotU family [Pantoea sp. At-9b] Length = 404 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 13/168 (7%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 Y P + L DL ++++ ++ + G + I + Sbjct: 234 YQTPLPQITPGRRPTSPQALLDLHQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F ++ +L + + + + +TD SP ++ S RA Sbjct: 287 ---LFAADGTVVNQVGRALLAHVASAMKTVKGTVLVSVYTDNSPVDGRFVSSYEFSFARA 343 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + Q+L ++E K G + +D + NRR++I + Sbjct: 344 RAIAQLLNPQ-LAEGHSVKAEGRGDSNPLLPNDSNENRARNRRVEITL 390 >gi|163787730|ref|ZP_02182177.1| hypothetical protein FBALC1_04287 [Flavobacteriales bacterium ALC-1] gi|159877618|gb|EDP71675.1| hypothetical protein FBALC1_04287 [Flavobacteriales bacterium ALC-1] Length = 366 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 ++ S+ P + V+ + + +L I I HTD+ R N LS RA S Sbjct: 258 YELGSARLTPASKKVIDERLLTILNDKPVNIEIMSHTDS---RGNDDFNQSLSQQRANSV 314 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 L+ G+S R+S G+ RL S+ + NRR + V Sbjct: 315 VNYLVSKGISRSRLSA-KGYGETRLTNRCTNGADCSETQHQRNRRTEFRVLS 365 >gi|313204239|ref|YP_004042896.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312443555|gb|ADQ79911.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 410 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 24/187 (12%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L D + + L K +LQ K I ++ VL Sbjct: 243 LKAIEDENAANKAKIQKLEADLQAANAERAADKAKLQADLKDIPQAKVSADSNQDALTVL 302 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDA 274 + F+ SS + +L + VL + + I GHTD Sbjct: 303 LDVN----------------FEFGSSELSSRSRAILDDVALVLKVNKAWSKLLISGHTDN 346 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 + N +LS +RA + L+ G+S + ++GF + K ++ NR Sbjct: 347 I---GGDKANKKLSEERAAGVKKYLISKGISAS-VIDVAGFGKEKPKTTNETKEGRYKNR 402 Query: 333 RIDILVE 339 R ++++E Sbjct: 403 RAELVIE 409 >gi|149919600|ref|ZP_01908079.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149819543|gb|EDM78971.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 458 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++I L++ EVL + + I GHTD+ R + N LS RA + Sbjct: 345 FETDKDTITKDSIPQLEQAAEVLNRFPDLRVEISGHTDS---RGGYQHNMDLSRRRAEAV 401 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 + L+ +GV R+ G +D NRRI+ + Sbjct: 402 KKWLVDNGVDGSRLE-TRGAGPDEPIDTNDTSAGRFNNRRIEFTIL 446 >gi|294785320|ref|ZP_06750608.1| outer membrane porin F [Fusobacterium sp. 3_1_27] gi|294487034|gb|EFG34396.1| outer membrane porin F [Fusobacterium sp. 3_1_27] Length = 396 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + + GHTD+ + N Sbjct: 285 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNQI 341 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 LS +RA + L G++ + I G+ R ++D NRR++I++ Sbjct: 342 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTAEGKQKNRRVEIII 393 >gi|262193395|ref|YP_003264604.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262076742|gb|ACY12711.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 458 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 26/273 (9%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 FG + + + D ++ + Y R+++ Sbjct: 189 FGFYYAFGPGEPAAPRTRRAEPVPYALASEPVDEDDDGVPDFSDACPSEPELYNRMDDED 248 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + E+ +D D + + + + P S ++ Sbjct: 249 GCPERDPDGDGLFGAADECPEEAEDFEGFEDEDGCPDVDNDGDGNPDSADECPNRAETDN 308 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE-TIV 250 + + VA+ I GI F S+ + Sbjct: 309 GFEDEDGCPDEVPTRVAEYIG-------VLEGIR-----------FPSGSAKIRDRRSRR 350 Query: 251 VLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + LA + I GHTD R A N +LS +RA + L+ G+ RI Sbjct: 351 ILGDVAATLAEYPSVRVRISGHTDD---RGRAEKNVQLSRERADAVKWFLVDKGIEHTRI 407 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVED 340 +G+ R + + NRRI+ + Sbjct: 408 V-TAGYGPERPLADNGTRAGRAKNRRIEFELLT 439 >gi|153007835|ref|YP_001369050.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559723|gb|ABS13221.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 200 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 30/187 (16%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGL------------VADNIVK---GVLFET 219 LP ++ + + ++DL +I +S A IV+ + Sbjct: 18 LPSVATAQNTSADNSAYIRDLVPEIRDLVSASGSTDGKARGLSGAAQEIVEKSGNITMRE 77 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T I++S+ +FD S+ + L I ++L + + + G+TD+ + Sbjct: 78 TEDSIVLSVTSD---VLFDFDSAKLTGKAKATLTDIAKILESMPDSAVRVVGYTDS---K 131 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331 N +LS RA + + L+ +GV R+ K G + +P + N Sbjct: 132 GADSYNDKLSKSRADAVTKFLVNNGVQSARL-KPEGRGESEPVAPNEIKGKDNPDGRAQN 190 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 191 RRVEFVL 197 >gi|317491523|ref|ZP_07949959.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921070|gb|EFV42393.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 564 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD +S+ T V++ + ++ A +I I GHTDA+ A+ N LS RA Sbjct: 445 SLFDTNSAKLKSGSTKVLVTALVDIKAQPGWLIVIAGHTDAT---GNAQRNLALSQARAE 501 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 + + G + G+ + ++ D +ANRR+DI + G Sbjct: 502 AVRDWMRSMGDIPVTCFAVQGYGASQPIASNETDAGRAANRRVDIRLVPEAG 553 >gi|157889006|dbj|BAF80954.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 19/161 (11%) Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 K K++++ AK+I + ++ + E T I F Sbjct: 175 KAPKTPQTTTKQIEEKPQAKQIDKSCPEPRKGALLDHIGCEKT--------IALEGYFGF 226 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296 D+ S PE +Q++G+VL + + +I GHTD++ N +LSL+RA + Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKVYNQKLSLERAKAVA 281 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L KSGV++++I+ G+ + K ++D + NRR++ Sbjct: 282 KELEKSGVAKEKIAA-KGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|149277257|ref|ZP_01883399.1| lipoprotein PG3 [Pedobacter sp. BAL39] gi|149232134|gb|EDM37511.1| lipoprotein PG3 [Pedobacter sp. BAL39] Length = 226 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 17/151 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR+ A +I + + E R G I I+ + +F + + Sbjct: 76 KRMDKQAAEIQNAIPNA-----------EVIREGEGI-IVKFDSGILFGFDKADLTAQAK 123 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ + L I + GHTD + N LS RA + + GV R Sbjct: 124 TNVKSLAGSLNQYPGTDIKVIGHTDN---KGTETYNMGLSERRAAAVKAYAVSQGVPSSR 180 Query: 309 ISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + + GF+ +++ +ANRR+++++ Sbjct: 181 LITVGKGFSEPIDDNSTEAGRAANRRVEVVI 211 >gi|332308557|ref|YP_004436408.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175886|gb|AEE25140.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 215 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E R G ++ + + F ++ VL+ + V+ + + + GHTD + Sbjct: 90 VEVYREGDVLRLY-MPGSITFSSGNASVDSSFFPVLKDVALVINKYEKTTLMVEGHTDNT 148 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N RLS RA S L+++GV R+S + G + + NRR Sbjct: 149 ---GADDMNQRLSEARANSVKNYLVQNGVDNRRVSTL-GMGEYTPIADNTTQAGRQKNRR 204 Query: 334 IDILVED 340 +++ + Sbjct: 205 VELKIIP 211 >gi|302037886|ref|YP_003798208.1| putative OmpA/MotB family outer membrane protein [Candidatus Nitrospira defluvii] gi|300605950|emb|CBK42283.1| putative Outer membrane protein, ompA family [Candidatus Nitrospira defluvii] Length = 301 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S++ + V+ K+ L + E +I I GHTD+ + + N +LS RA + Sbjct: 198 FESNSAVLTSKGRAVVDKLVPALKRAPEAIIEIGGHTDS--YGDPEY-NLQLSRTRAEAV 254 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 Q L++ V +R++ + G+ R + NRRI+ V++ + Sbjct: 255 RQYLVEHQV-PNRLTAV-GYGSTRPLSQDRTRAASKKNRRIEFRVKEER 301 >gi|256845382|ref|ZP_05550840.1| outer membrane porin F [Fusobacterium sp. 3_1_36A2] gi|256718941|gb|EEU32496.1| outer membrane porin F [Fusobacterium sp. 3_1_36A2] Length = 396 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + + GHTD+ + N Sbjct: 285 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNQI 341 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 LS +RA + L G++ + I G+ R ++D NRR++I++ Sbjct: 342 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTAEGKQKNRRVEIII 393 >gi|218514237|ref|ZP_03511077.1| outer membrane lipoprotein [Rhizobium etli 8C-3] Length = 141 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G TR G I I++ + FD P L + VL I + G Sbjct: 11 LEGTGISVTRNGDNI-ILNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTLIDVNG 69 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328 HTD++ + N LS RA S L G+ + R+S + GF + AS+ Sbjct: 70 HTDST---GSLQHNQDLSQRRALSVADYLGGQGIDQRRVSAV-GFGPSQPVASNASEAGR 125 Query: 329 SANRRIDILV 338 + NRR++I + Sbjct: 126 AQNRRVEIQI 135 >gi|326403344|ref|YP_004283425.1| hypothetical protein ACMV_11960 [Acidiphilium multivorum AIU301] gi|325050205|dbj|BAJ80543.1| hypothetical protein ACMV_11960 [Acidiphilium multivorum AIU301] Length = 215 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%) Query: 212 VKGVLFETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHS 262 + + T G + + + + F S+ P +L ++G+ L + Sbjct: 73 AQKQALQRTAQGTGVQVSQTADNRLKLNVPADAGFATGSATLNPRLYPILDQLGQGLQQN 132 Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E + I G+TD++ I LS +RA S L+ G+S RI G Sbjct: 133 PTETVQIIGYTDSTGSNAINYP---LSDNRAASVKTYLVSRGISGQRI-ATRGMGPQDPV 188 Query: 322 --IASDPMNSANRRIDILV 338 A+ +ANRR+DI V Sbjct: 189 ASNATAAGRAANRRVDIYV 207 >gi|284034989|ref|YP_003384919.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283814282|gb|ADB36120.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 432 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 19/251 (7%) Query: 104 EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL 163 + K L S + + ++ + + +L S D + Sbjct: 184 PKLPKKQTPLPQPSGESGGEMETPRTDVPKKETLKPAPAPVPTLVSVSGIVSDAKSKRPV 243 Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 +I+ + + + + A R+ ++ + ++ GVL + G Sbjct: 244 TATIDYQLSSSKQAIDSVQSFASTGAYRMSLNKGQVYTYIASARGYQSASGVLDLSKVAG 303 Query: 224 ILISIIDQRNTPM------------FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 D TP+ F+ S S L + L K+ ++ + + I + G Sbjct: 304 GQKLTRDIALTPLAVGDKVTLKNIYFEMSKSNLLSASFAELNKLVSMMQDNPNMSIRLEG 363 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMN 328 HTD N +LS DR + + L++ G+ DRI I G+ R + +D Sbjct: 364 HTD---IIGDHDKNLQLSRDRVIACQRYLVQQGIDIDRIQTI-GYGDTRPILTKGTDEER 419 Query: 329 SANRRIDILVE 339 NRR++ ++ Sbjct: 420 KVNRRVEFVIL 430 >gi|323189288|gb|EFZ74571.1| inner membrane lipoprotein yiaD [Escherichia coli RN587/1] Length = 219 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKLAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTSEGKAQNRRVEITL 216 >gi|225873103|ref|YP_002754562.1| ompA family protein [Acidobacterium capsulatum ATCC 51196] gi|225791640|gb|ACO31730.1| ompA family protein [Acidobacterium capsulatum ATCC 51196] Length = 508 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + + + + G+++++ D +F S + L +I +L Sbjct: 345 MRNRLEQQLNAVLATRESARGLIVNMSD----VVFATGSYQIKTSAQIKLARIAGILMTY 400 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + G+TD A N +LS RA + + L+ GV + IS G+ Sbjct: 401 PGLKVQVEGYTDNV---GSAAFNQKLSNQRANAVMKFLISQGVKANSISA-KGYGEADPV 456 Query: 322 IASDP--MNSANRRIDILV 338 +++ + NRR+ ++V Sbjct: 457 ASNNTVAGRAKNRRVQLVV 475 >gi|167644153|ref|YP_001681816.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31] gi|167346583|gb|ABZ69318.1| OmpA/MotB domain protein [Caulobacter sp. K31] Length = 224 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 9/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G R G I ++ + F S P+ VL + L + I I G Sbjct: 94 LEGSGVMIRRNGDQIVLV-MPSDVTFAVDKSEVQPQFTRVLDDVARTLNAYPQTTIDIVG 152 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--M 327 H D+ N LS RA S L G V DR+ ++G + ++D Sbjct: 153 HADS---SGPDDYNQTLSERRASSVASYLTNVGRVVPDRVF-VAGQGERQPIASNDTPEG 208 Query: 328 NSANRRIDILVED 340 + NRR++I++ Sbjct: 209 RAQNRRVEIILRP 221 >gi|153833224|ref|ZP_01985891.1| outer membrane protein OmpA [Vibrio harveyi HY01] gi|148870495|gb|EDL69410.1| outer membrane protein OmpA [Vibrio harveyi HY01] Length = 326 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ + F+ S+ L L + + I G+TD+ A N +LS Sbjct: 207 EEYGSGTFEFDSAKLTDSVSERLDNFVNFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 263 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA + L+ +G+ DR + ++G + NRR++++V Sbjct: 264 ERRAQAVADYLIAAGIDADRFT-VTGMGEENPVADNSTHEGREQNRRVEVVV 314 >gi|261380477|ref|ZP_05985050.1| OmpA family protein [Neisseria subflava NJ9703] gi|284796724|gb|EFC52071.1| OmpA family protein [Neisseria subflava NJ9703] Length = 226 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 8/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 E R G I ++ N F S+ L + L + ++I GHT Sbjct: 90 NTNIEVERQGNQIKLVMPENVT-FATGSAALSGHAQSALSAAAQTLVQYPDTTLTINGHT 148 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D + N LS +RA S L GVS R+ G+ + ++ + Sbjct: 149 DNT---GNDAINEPLSRNRAESVATFLQSRGVSSTRL-STFGYGSRQPIASNATVEGRAQ 204 Query: 331 NRRIDILVEDRQ 342 NRR++IL+ Q Sbjct: 205 NRRVEILINPDQ 216 >gi|146328667|ref|YP_001209012.1| OmpA family protein [Dichelobacter nodosus VCS1703A] gi|146232137|gb|ABQ13115.1| OmpA family protein [Dichelobacter nodosus VCS1703A] Length = 225 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%) Query: 223 GILISIIDQ-------RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDA 274 GI + IDQ +F P L + + + + I I GHTD+ Sbjct: 88 GINVQRIDQGTLQLNIPGDVLFATDEYQIRPNFYQTLNSVAQTMNQYPQTIVHIYGHTDS 147 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332 + A N LS RA SA Q LM+ GV+ RI G+ + + + + NR Sbjct: 148 T---GRAAYNQGLSERRANSAAQYLMQQGVNMQRILS-KGYGQNYPRANNATPDGRAQNR 203 Query: 333 RIDILVE 339 R+++ ++ Sbjct: 204 RVEVYIK 210 >gi|157889051|dbj|BAF80990.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K++++ K+I T S ++ + E T I++ F + Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232 Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++++I G+ + K ++D + NRR++ Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|157889046|dbj|BAF80986.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K++++ K+I T S ++ + E T I++ F + Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232 Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++++I G+ + K ++D + NRR++ Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|157889041|dbj|BAF80982.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K++++ K+I T S ++ + E T I++ F + Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232 Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++++I G+ + K ++D + NRR++ Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|157889031|dbj|BAF80974.1| fibronectin-binding protein [Campylobacter lari] gi|157889036|dbj|BAF80978.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K++++ K+I T S ++ + E T I++ F + Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232 Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GPKAYNQKLSLERANAVAKELEKTGV 289 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++++I G+ + K ++D + NRR++ Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|86141296|ref|ZP_01059842.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] gi|85831855|gb|EAQ50310.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] Length = 640 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 90/267 (33%), Gaps = 19/267 (7%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D+ E NK S D K D+ + N K Q + ++ L + + K Sbjct: 383 DDFAYLEGDEPNKGFFSSDRPGGKGGDDIYAFNYNLAKCVQYISGTVYDLETKEPIKGAK 442 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +T E GK+ + + E + E A + +L + Sbjct: 443 --VTVFDEDGKEYARIETGDDGSYSVELLCESTYTIEARKAGYSEDQLDFETDVLPDRKM 500 Query: 205 GLVADNIVKGVLFETTRTGI-LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +V + T I I I + F+ + L+++ EV+ Sbjct: 501 NMVDFRLKDLSEIFVTDGDIEKIRI----DPIYFEYYRYNITDVAAIQLRRVIEVMDAYP 556 Query: 264 EVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 E+I I HTD R N LS +RA S L+++G+ RI G+ + Sbjct: 557 EMIIKIESHTDQ---RGTDYFNKTLSTNRANSTKDWLIENGIDPSRIQSAIGYGESQPIN 613 Query: 323 ASDPMN--------SANRRIDILVEDR 341 D S NRR + +V R Sbjct: 614 ICDEEGKTCTELEYSENRRSEFIVVSR 640 >gi|298369467|ref|ZP_06980784.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282024|gb|EFI23512.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 224 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 17/154 (11%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + AKK+ +L+ + + G I ++ N F +S+ Sbjct: 77 MDYQAKKLRESLANTD---------VKVEQQGNQIKLVMPENVT-FATNSATLSANARDA 126 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + L + ++I GHTD + N LS +RA S L GV+ R++ Sbjct: 127 LTAASKTLVQYPDTTLTINGHTDNT---GSDAINDPLSRNRAQSVASFLQSQGVAGSRLT 183 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +G + ++ + NRR++IL+ Q Sbjct: 184 -TAGHGSRQPVASNATPEGRAQNRRVEILINPDQ 216 >gi|88705660|ref|ZP_01103370.1| outer membrane protein; OprF [Congregibacter litoralis KT71] gi|88700173|gb|EAQ97282.1| outer membrane protein; OprF [Congregibacter litoralis KT71] Length = 247 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 16/132 (12%) Query: 219 TTRTGILI---------SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268 T G+ + ++ + FD S+ ++ L V+ HS+ + + Sbjct: 119 NTPEGVKVDATGCPIKDEVVLTVDRLSFDFDSAALDAQSRAALDAAVAVIKSHSSVKMDV 178 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD N LS RA +A L+ GV D++ + +G ++D Sbjct: 179 VGYTDT---SGPEEYNLGLSKRRAQAAVDYLVSQGVDADQL-RATGRGEADPVASNDTRD 234 Query: 327 MNSANRRIDILV 338 NRR++++V Sbjct: 235 GRERNRRVELVV 246 >gi|312892040|ref|ZP_07751540.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311295412|gb|EFQ72581.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 460 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 7/129 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 + V T + + D FD + ++ L K+ E+L + + + GH Sbjct: 336 AENVKVYITEEDKRV-VKDAIANLEFDLGKATIRAHSLPSLDKVAELLVNKNFSLKLAGH 394 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 TD A N RLS +RA + L+ G + RI +G+ ++ ++ Sbjct: 395 TDN---SGSAALNMRLSKERAEAIKTYLVSKGANASRIEA-TGYGMNQPIASNKTAAGRQ 450 Query: 331 -NRRIDILV 338 NRR++ + Sbjct: 451 QNRRVEFTL 459 >gi|237753154|ref|ZP_04583634.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC BAA-430] gi|229375421|gb|EEO25512.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC BAA-430] Length = 466 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 11/153 (7%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + +KIS + + +K + ++I ++ F +SS P Sbjct: 82 RAEQRKISEAKNVKIEFENIKKDGTKQKNDKVII-----KDNNQFKSASSTLNPNAKDYY 136 Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +I + + I I GHTD + + N +LS RA + +V ++GVS I Sbjct: 137 TQIAKTYQVKDKKILIVGHTDDT---GNSAFNQKLSEKRARAVGKVFAQNGVSTKNIY-Y 192 Query: 313 SGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 G + K ++ + NRR++I+ D + Sbjct: 193 QGAGSTQPKADNNTEKGRAENRRVEIIELDNEA 225 >gi|291617209|ref|YP_003519951.1| YiaD [Pantoea ananatis LMG 20103] gi|291152239|gb|ADD76823.1| YiaD [Pantoea ananatis LMG 20103] Length = 405 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 Y +P + L DL ++++ ++ + G + I + Sbjct: 234 YNMPLPQITVNRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDR 291 +F + ++ P +L ++ + I + TD P + ++ S R Sbjct: 287 ---LFAEQGTVINPVGRAILARVSSAMKDVKGTILVSVFTDDKPVDGSRFASSYEFSFAR 343 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 A S Q+L +++ + + G + +D + NRR++I + Sbjct: 344 ARSVSQLLQVQ-LADTHVIRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391 >gi|126641351|ref|YP_001084335.1| putative outer membrane lipoprotein [Acinetobacter baumannii ATCC 17978] Length = 209 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S++ +L ++ L + I GHTD+ A N +LS DRA + Sbjct: 108 FESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDS---SGDANKNLKLSQDRALAV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 L+ + D + G + + NRRI+ V Sbjct: 165 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 209 >gi|260062849|ref|YP_003195929.1| OmpA family protein [Robiginitalea biformata HTCC2501] gi|88784417|gb|EAR15587.1| OmpA family protein [Robiginitalea biformata HTCC2501] Length = 231 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 17/156 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R+ A+KI L G + GI ++ + F + S ++ Sbjct: 78 RMDRQAEKIEEELPGA---------EVKRVGEGINVTFTQDQGVH-FATNQSAIEGASVT 127 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L K+ + + VI + GHTD+ N LS RA S L+ G+ +DR Sbjct: 128 TLNKLAGIFKEYPKSVILVEGHTDS---AGPEDYNMSLSQRRAESVVNYLVAQGIDKDRF 184 Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 + + + + + + + NRR+++ + + Sbjct: 185 T-VRWYGETQPRADNSTAEGKAQNRRVEMGIIASEA 219 >gi|254463375|ref|ZP_05076791.1| OmpA family domain protein [Rhodobacterales bacterium HTCC2083] gi|206679964|gb|EDZ44451.1| OmpA family domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 222 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L V T +++S+ F S+ L + Sbjct: 83 LDKQAAELQKSLGNDRVTITNTGDRLIVSLPQDIT---FASDSATLSSGIQSDLNAVATN 139 Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + GHTD++ A N LS+ RA S VL +GVS R+ I G Sbjct: 140 LQSYPNSTVQVIGHTDST---GEAGYNQNLSVQRANSVVNVLAGAGVSFTRLQGI-GRGE 195 Query: 318 HRLKIAS--DPMNSANRRIDILVED 340 + ++ + + NRR++I++ Sbjct: 196 DQPVASNLTEEGKAQNRRVEIVILP 220 >gi|254465245|ref|ZP_05078656.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206686153|gb|EDZ46635.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 219 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 22/217 (10%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S K ++ + D ++ + + + I Sbjct: 22 TDPATVGTPGSNTQKGAVLGGIIGAGVGAIANDSDRGLGAATGALVGAAAGSVI-----G 76 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L +++ TL+ + T +++S N F S+ P Sbjct: 77 NQLDAQERELRQTLAN-------DSITIVNTGDRLILSF---PNDLTFATDSAAVAPAVQ 126 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+++ + L I + GHTD+ A N LS RA + + GV R Sbjct: 127 ADLRRVADSLVRYPNSAIQVIGHTDSD---GDAGYNQGLSERRANAVASHIQAGGVPYHR 183 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 + +I G + ++ + NRR++++V + Sbjct: 184 M-RIIGRGESQPVASNLTPEGKARNRRVEVVVIPQAA 219 >gi|189179675|dbj|BAG39456.1| outer membrane protein [Gluconacetobacter intermedius] Length = 405 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD + + ++ + + H T I + G+TD A P + N LS+ R Sbjct: 297 FFDWDGAALTGRSREIVAQAAQASTHVQTTRIEVNGYTDNSAAHPGPRGEQYNMGLSMRR 356 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A S L++ GV I I G+ + + D NRR++I++ Sbjct: 357 ADSVKAELIRDGVPASGID-IHGYGEAHPMVPTGPDTREPQNRRVEIIL 404 >gi|94496613|ref|ZP_01303189.1| OmpA/MotB [Sphingomonas sp. SKA58] gi|94423973|gb|EAT08998.1| OmpA/MotB [Sphingomonas sp. SKA58] Length = 226 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 15/162 (9%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDK 239 + +K L ++ G D + + ET TG+ + I D N + F Sbjct: 60 RTEKILGAGIGAVAGAGIGAYMDAQERKLREETAGTGVDV-IRDGDNLLLRMPSGITFGY 118 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + P+ L + VLA + I + GHTD+ N LS RA + Sbjct: 119 DRADVQPQFQPTLNDVASVLAQYPKTYIDVYGHTDSD---GSDAYNQTLSERRAQAVANY 175 Query: 299 LMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L+ GV RI GF + A++ +ANRR++I + Sbjct: 176 LVGRGVQSARIG-TRGFGETQPIASNATEEGKAANRRVEIKI 216 >gi|134094293|ref|YP_001099368.1| putative outer membrane protein; putative peptidoglycan-associated (lipo)-protein [Herminiimonas arsenicoxydans] gi|133738196|emb|CAL61241.1| conserved hypothetical protein; putative OmpA domain [Herminiimonas arsenicoxydans] Length = 225 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-I 266 + +G + T+T +D + F S +L + L + + Sbjct: 81 MEQATQGTGVQVTQTSDNRLKLDIPSDISFATGRSDINSSFRPILDRFATGLVDNPAATV 140 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IAS 324 +I GHTD++ I LS DRA L GV+ RI + G A+ Sbjct: 141 TIIGHTDSTGSDAINNP---LSFDRASRTRDYLAGRGVAPQRIH-VDGRGSREPVASNAN 196 Query: 325 DPMNSANRRIDILV 338 + + NRR++I V Sbjct: 197 EAGRARNRRVEIYV 210 >gi|261416280|ref|YP_003249963.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372736|gb|ACX75481.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 485 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S ++ + L K+ +++ E I GHTD N LS DRA + Sbjct: 381 FESGKSTITQDSYISLMKVVDIMETFPEATFEIVGHTDNI---GNKDKNMTLSADRANAV 437 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L++ G++E R++ G + ++ + NRRI+ + Sbjct: 438 KNFLVEKGIAESRMT-TQGMGDTKPVASNKTPEGRAQNRRIEFI 480 >gi|156072340|gb|ABU45492.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328072|gb|ADL27273.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 511 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S ++ + L K+ +++ E I GHTD N LS DRA + Sbjct: 407 FESGKSTITQDSYISLMKVVDIMETFPEATFEIVGHTDNI---GNKDKNMTLSADRANAV 463 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L++ G++E R++ G + ++ + NRRI+ + Sbjct: 464 KNFLVEKGIAESRMT-TQGMGDTKPVASNKTPEGRAQNRRIEFI 506 >gi|327393665|dbj|BAK11087.1| flagellar motor protein YiaD [Pantoea ananatis AJ13355] Length = 405 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 Y +P + L DL ++++ ++ + G + I + Sbjct: 234 YNMPLPQITVNRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF-RNIARDNWRLSLDR 291 +F + ++ P +L ++ + I + TD P + ++ S R Sbjct: 287 ---LFAEQGTVINPVGRAILARVSSAMKDVKGTILVSVFTDDKPVDGSRFASSYEFSFAR 343 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 A S Q+L +++ + + G + +D + NRR++I + Sbjct: 344 ARSVSQLLQVQ-LADTHVIRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391 >gi|295681051|ref|YP_003609625.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295440946|gb|ADG20114.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 559 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 11/147 (7%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 K++ L + A + + + + I N +FD + P L+ + Sbjct: 416 KQLQVALERVTATSHSPSIAAHSPPLAVTI-----DNFLLFDTGKTTLKPGAEPRLKGVL 470 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +++ + + I I GHTD + N +LS RA + + + I G+ Sbjct: 471 DLIRANPDKRILIAGHTDNV---GPSVANQKLSEARAQAIRDWFVNTASLSVTRFAIQGY 527 Query: 316 AHHRLKIASDP--MNSANRRIDILVED 340 R +++ NRR++I + Sbjct: 528 GDTRPIASNESRQGREMNRRVEISLIP 554 >gi|77919971|ref|YP_357786.1| outer membrane protein/peptidoglycan-associated (lipo)proteins [Pelobacter carbinolicus DSM 2380] gi|77546054|gb|ABA89616.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Pelobacter carbinolicus DSM 2380] Length = 427 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 22/272 (8%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D +N S+ + T V + + Sbjct: 164 DPENNFIYSAGLTYLFGSQQPATPRVVPKDTDQDGIIDANDACPDTPAGAPVDKLGCPL- 222 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +S +D C T +++++ + + D + Sbjct: 223 DSDKDGVPDYRDKCPGTPDSVAVDQQGCALDKDGDGVADIHDRCPDTPADTPVDTEGCMG 282 Query: 205 GLVADNIVKGV-LFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256 D + + T G+++ DQ+ P+ FD + P L++ Sbjct: 283 DADKDGVADQMDKCPGTPAGLMV---DQQGCPISLTLAIEFDVDKADIKPRYHSELKRGA 339 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISG 314 + + E I I GHTD++ + A N LS RA S ++ + G+ +R+ G Sbjct: 340 DFIRKYPESRILIAGHTDST--ASDAY-NLALSQRRADSVRNYVISNFGIKAERLEA-KG 395 Query: 315 FAHHRLKIASDP--MNSANRRIDILV--EDRQ 342 + + NRR+++ V +++ Sbjct: 396 YGEAFPIADNATVQGRQRNRRVELSVYALNKK 427 >gi|86139806|ref|ZP_01058372.1| OmpA domain protein [Roseobacter sp. MED193] gi|85823435|gb|EAQ43644.1| OmpA domain protein [Roseobacter sp. MED193] Length = 218 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 21/206 (10%) Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 Q E +N L + G L ++ ++ + K+ +L + Sbjct: 29 QPGEKERNGLIAGAIVGAGLAGLSNSSNKGAAVVAGAAAGALLGGVIGSQLDKQEAELRE 88 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 +S+ G+ T +++S+ N F S+ P L+++ + Sbjct: 89 SLSN-----------NGITIVNTGDRLIVSL---PNDLTFASDSAAISPAVESDLRQVAQ 134 Query: 258 VLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 + + + GHTD+ A N LS RA + + GV +R+ + G Sbjct: 135 SIVRYPNSSVQVIGHTDSD---GDASYNQTLSEQRANTVADQVQAGGVPYNRL-QTFGRG 190 Query: 317 HHRLKIAS--DPMNSANRRIDILVED 340 + ++ + NRR++I++ Sbjct: 191 ESQPVASNLTAEGKAQNRRVEIVIVP 216 >gi|104780439|ref|YP_606937.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95109426|emb|CAK14127.1| putative outer memebrane protein, OmpA family [Pseudomonas entomophila L48] Length = 239 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I++ D + +F +S L + L + I + GHTD+ Sbjct: 127 VITL-DDQGQVLFAFNSDRLEAGAQERLHNLLPKLNDPSVLSIKVIGHTDSV---GSDSY 182 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 N LS RA S + L+ G++ ++++ G +D + NRR+++ + Sbjct: 183 NQGLSERRASSVAEYLISQGLAPEKVTS-QGRGESEPVADNDTEEGRAHNRRVELHL 238 >gi|92113921|ref|YP_573849.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91797011|gb|ABE59150.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 294 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ E +L + L+ + + + + G+TD+ A N LS RA S Sbjct: 192 FEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSV---GSASYNKDLSQRRADSV 248 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L+ GV+ D I+ G+ ++ + NRR+++ Sbjct: 249 KEYLVSKGVNADSIT-TYGYGEQNPIATNETAEGRAENRRVEL 290 >gi|114319490|ref|YP_741173.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225884|gb|ABI55683.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 224 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G TR G + I++ F S+ + VL + V + +I + G Sbjct: 95 LRGTGVSVTRDGENV-ILNMPGHVTFAFDSADLRSDFFEVLDSVAIVANEFDQTMIEVAG 153 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 HTD++ A N RLS RA + + L+ V+E R+ + GF R ++ + Sbjct: 154 HTDST---GPAEYNQRLSERRAQTVARYLVGRDVAEMRMIAV-GFGEERPIASNQTEEGR 209 Query: 329 SANRRIDILVED 340 NRR++I Sbjct: 210 QQNRRVEITFLP 221 >gi|307823763|ref|ZP_07653991.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307735057|gb|EFO05906.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 322 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 91/273 (33%), Gaps = 20/273 (7%) Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 T S + D PP Q ++ + + +T+++ + + + Sbjct: 62 TQSPAVDDGLQPPITQLQGEVTQNQAKGLTESAQNKGLELEPTQSPVDEGSQPPITQPQG 121 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 + + LT ++ + T + P + + + K L + A+ Sbjct: 122 EVTPDLAKGLTESTQNKGLELEPTQSPIDEGSQSAITQP----QGEVTPDQAKGLTESAQ 177 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + A + E +L+ F P + I Sbjct: 178 PAGDSGFPTPAAEGKRSSQHEPVS--LLVL-----GGGFFSSGQITPRANIQDAIDNIIP 230 Query: 258 VLAHST-EVISIRGHTDA-SPF----RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 ++ + + + GH D PF +++ N +SL RA + QVL K G++ DRI Sbjct: 231 LIQTRPLDNVVVEGHADKWVPFGASPAQVSKLNENISLRRANAIAQVLKKKGIASDRII- 289 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + G ++ + NRR++I + Q Sbjct: 290 VHGLGDTVPLASNLTYDGRMKNRRVEIKLLPAQ 322 >gi|153009315|ref|YP_001370530.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561203|gb|ABS14701.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 221 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G TR G I I++ ++ FD + L + VL + ++ + G Sbjct: 90 LQGTGVSVTRNGDQI-ILNMPSSITFDTDQDQVKSQFYPTLNSVAIVLRKFNQTLVDVYG 148 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 HTD++ N LS RA S L G+ R + G+ + + Sbjct: 149 HTDST---GSVSHNQALSQRRAASVASYLGSQGIDPRRF-AVIGYGASQPVATNATPEGR 204 Query: 329 SANRRIDILVEDRQG 343 + NRR++I + + Sbjct: 205 AQNRRVEIQISPLRA 219 >gi|4580971|gb|AAD24558.1|AF117966_1 OprF [Pseudomonas mendocina] Length = 318 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E+ ++ + + + + + + GHTD+ N LS RA + Sbjct: 219 FDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSV---GSDAYNQGLSERRANAV 275 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL+ + GV R++ + G+ R A+D + NRR++ Sbjct: 276 RNVLVNQYGVDGSRVNAV-GYGETRPVADNATDSGRAINRRVE 317 >gi|332828413|gb|EGK01122.1| hypothetical protein HMPREF9455_02644 [Dysgonomonas gadei ATCC BAA-286] Length = 224 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + G E+ G I + + +F +SS + L L ++ + + I Sbjct: 84 EQINGAQVESINDGQAIKVT-FESGILFATNSSTLNSASQSALTSFATSLNNNPDTDVQI 142 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + I LS RA S Y L GVS R+ GF + + Sbjct: 143 YGHTDNTGSDAINNP---LSEKRAQSVYNFLQTKGVSGSRMVS-QGFGSTQPVADNSTVA 198 Query: 327 MNSANRRIDILVEDRQ 342 S NRR++I + + Sbjct: 199 GRSQNRRVEIYILPNE 214 >gi|254511628|ref|ZP_05123695.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11] gi|221535339|gb|EEE38327.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11] Length = 634 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDN 284 I+ + Q + F+ S+ + ++ L +I ++L + I+GHTD+ N Sbjct: 488 IAEVQQGSKIAFEPGSATVVADSRAALDQIADILRECGPIRLEIQGHTDSQ---GREEMN 544 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 +LS RA S L V S + G+ +D + NRRI+ L+ + Sbjct: 545 QQLSQARAQSILNELRGRRVPTSSFSAV-GYGETLPIADNDTEDGREANRRIEFLLIRPE 603 >gi|56477938|ref|YP_159527.1| outer membrane lipoprotein [Aromatoleum aromaticum EbN1] gi|56313981|emb|CAI08626.1| outer membrane lipoprotein containing OmpA/MotB domain [Aromatoleum aromaticum EbN1] Length = 189 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + P P L ++ LA S I + GHTD+ + N +LS+ RA + Sbjct: 85 FSRGGTEPQPVLTPNLDRVASALASSPEVEIRVFGHTDSL---DSELHNLQLSIQRAETV 141 Query: 296 YQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVED 340 + L + G+ R+ G A A++ + NRR++I++ Sbjct: 142 AEHLRRRGIPLVRLHADGKGEAEPIADNATEAGRAKNRRVEIVLRP 187 >gi|322509420|gb|ADX04874.1| Outer membrane protein [Acinetobacter baumannii 1656-2] gi|323519441|gb|ADX93822.1| putative lipoprotein precursor [Acinetobacter baumannii TCDC-AB0715] Length = 154 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290 +FD + + L ++ L + I GHTD N N +LS + Sbjct: 47 PERLLFDFNDATLKQSHEAELTRLANQLNKYDLNKLKIVGHTDD--VGNPEY-NQKLSEE 103 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 RA S + + G ++ I + G + + + + + NRR+ I++ Sbjct: 104 RAQSVANLFLTHGFKKENIY-VIGRGSTQPYVPNTTNENRAINRRVAIVIIP 154 >gi|169794682|ref|YP_001712475.1| putative lipoprotein precursor [Acinetobacter baumannii AYE] gi|213157946|ref|YP_002320744.1| OmpA/MotB [Acinetobacter baumannii AB0057] gi|215482270|ref|YP_002324452.1| Outer membrane protein A precursor [Acinetobacter baumannii AB307-0294] gi|239504137|ref|ZP_04663447.1| Outer membrane protein A precursor [Acinetobacter baumannii AB900] gi|260554079|ref|ZP_05826342.1| outer membrane protein A [Acinetobacter sp. RUH2624] gi|260558111|ref|ZP_05830321.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC 19606] gi|301345841|ref|ZP_07226582.1| Outer membrane protein A precursor [Acinetobacter baumannii AB056] gi|301512157|ref|ZP_07237394.1| Outer membrane protein A precursor [Acinetobacter baumannii AB058] gi|301597153|ref|ZP_07242161.1| Outer membrane protein A precursor [Acinetobacter baumannii AB059] gi|332851565|ref|ZP_08433542.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332867764|ref|ZP_08437836.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|332873499|ref|ZP_08441450.1| OmpA family protein [Acinetobacter baumannii 6014059] gi|169147609|emb|CAM85470.1| putative lipoprotein precursor [Acinetobacter baumannii AYE] gi|193078408|gb|ABO13390.2| putative lipoprotein precursor [Acinetobacter baumannii ATCC 17978] gi|213057106|gb|ACJ42008.1| OmpA/MotB [Acinetobacter baumannii AB0057] gi|213987976|gb|ACJ58275.1| Outer membrane protein A precursor [Acinetobacter baumannii AB307-0294] gi|260404818|gb|EEW98325.1| outer membrane protein A [Acinetobacter sp. RUH2624] gi|260408384|gb|EEX01692.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC 19606] gi|332729910|gb|EGJ61242.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332733770|gb|EGJ64922.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|332738324|gb|EGJ69200.1| OmpA family protein [Acinetobacter baumannii 6014059] Length = 159 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290 +FD + + L ++ L + I GHTD N N +LS + Sbjct: 52 PERLLFDFNDATLKQSHEAELTRLANQLNKYDLNKLKIVGHTDD--VGNPEY-NQKLSEE 108 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 RA S + + G ++ I + G + + + + + NRR+ I++ Sbjct: 109 RAQSVANLFLTHGFKKENIY-VIGRGSTQPYVPNTTNENRAINRRVAIVIIP 159 >gi|163753146|ref|ZP_02160270.1| outer membrane protein, peptidoglycan-associated lipoprotein [Kordia algicida OT-1] gi|161326878|gb|EDP98203.1| outer membrane protein, peptidoglycan-associated lipoprotein [Kordia algicida OT-1] Length = 543 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 20/295 (6%) Query: 52 WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 + + D K I+ FN M +S ++ N + + K Sbjct: 263 YNLGGLDVFESKIIDGKFNFPVN--MGSSLNSTEDDFGFLMDQSNSGFFTSNRPGGKGGN 320 Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 D I ++K Q L+ I + + ++ + D S D Sbjct: 321 D--IYYFKREKTTQILQGTIVDYKTNMILPNATVTVVDAYGRVVDKITSDDKGVFTTTVI 378 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 Y L K ++ ++ + + ++ E ++I I Sbjct: 379 PYNSYTLHASKDGFIETEEEFESFRGDDFKHTVTIKLPQAKAEIVKE--DEKLMIKI--- 433 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 FD + + E+ + L KI +VL + E I I HTD R A N +LS Sbjct: 434 -ENIYFDYNKWMLKDESTLSLNKIIDVLNENPEMKIEINAHTDN---RGRATYNSKLSNK 489 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340 RA SA L+K+G+ R+ +G+ + S+ + NRRI+ L+ + Sbjct: 490 RAASARAYLLKNGIDASRVIS-NGYGESQPIEDCGTKCSEAQHETNRRIEFLIVE 543 >gi|255533611|ref|YP_003093983.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346595|gb|ACU05921.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 440 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V+ ++ ++ D FD + ++ L ++ E+L + + GH Sbjct: 318 VEKIIITEADRKVV---ADAIKNLEFDLGKATIRQKSYATLNRVAELLIQKNFSLKLAGH 374 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 TD + A N RLS DRA S L+ G + RI +G+ ++ ++ Sbjct: 375 TDNT---GSAALNMRLSKDRAESVKAYLVSQGANASRIEA-TGYGMNQPIASNKTAAGRQ 430 Query: 331 -NRRIDILV 338 NRR++ + Sbjct: 431 QNRRVEFTL 439 >gi|33600833|ref|NP_888393.1| putative lipoprotein [Bordetella bronchiseptica RB50] gi|33568433|emb|CAE32345.1| putative lipoprotein [Bordetella bronchiseptica RB50] Length = 200 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 16/138 (11%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271 +GV + + I+++ +FD + L LQ I +++ +T +++I GH Sbjct: 70 EGVSVRQGKDAVTIAMM---GDVLFDFDKADILAAAEPTLQDIAKLIKSPATGIVAIEGH 126 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------- 324 TD+ + N LSL RA + Q L GV ++ + G R + Sbjct: 127 TDS---KGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKL-SVRGLGAARPVQPNQLANGAD 182 Query: 325 DP-MNSANRRIDILVEDR 341 +P + NRR++ ++ +R Sbjct: 183 NPQGRAQNRRVEFVLPNR 200 >gi|262364585|gb|ACY61142.1| OmpA domain protein [Yersinia pestis D182038] Length = 987 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 813 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 869 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 870 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 929 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 930 AIGRGESDPLADNATEEGRKRNRRVDIL 957 >gi|119944065|ref|YP_941745.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37] gi|119862669|gb|ABM02146.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37] Length = 215 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + L + +VL + + I GHTD+ + N LS RA S Sbjct: 112 FDTGNYQLSGSIFSTLNGVAKVLNEYPKSSLRIIGHTDSV---GSSESNLTLSERRAESV 168 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 LM+ V R+S + G+ R +D +ANRR++I Sbjct: 169 SNYLMQRNVKSGRLSTL-GYGERRPIATNDTPYGRAANRRVEI 210 >gi|26987857|ref|NP_743282.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|148546400|ref|YP_001266502.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|24982560|gb|AAN66746.1|AE016303_1 OmpA family protein [Pseudomonas putida KT2440] gi|148510458|gb|ABQ77318.1| OmpA/MotB domain protein [Pseudomonas putida F1] gi|313497483|gb|ADR58849.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 230 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ L I L + +S+ GHTD+ N +LS RA+S Sbjct: 126 FEFDSARLTASDKERLNTIATRLKQEAPSARLSVSGHTDSV---GSDSYNQKLSERRAHS 182 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 L++SGV + G + A+ + NRR +I ++ Sbjct: 183 VTDYLVESGVPRSSFVSVVGAGETQPVADNATAEGRAMNRRTEIKIQR 230 >gi|37528060|ref|NP_931405.1| hypothetical protein plu4224 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787497|emb|CAE16596.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 558 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S PE VL + E+ A ++ I GHTD++ A N LSL RA Sbjct: 441 SLFDVGQSRLKPEAAKVLVNALIEIKAKPEWMVVITGHTDST---GDAVKNRELSLARAK 497 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + +L S VS + G + + + NRR++I + Sbjct: 498 AVRDWILQTSDVSPT-CFVVKGEGATQPIATNTTAVGRAVNRRVEISLMP 546 >gi|34763480|ref|ZP_00144424.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886853|gb|EAA23981.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 157 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L+ I E + + I+I GHTD+ + A N++ Sbjct: 28 TIVLDERSLNFDFDKSNVKPQYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 85 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142 >gi|297568668|ref|YP_003690012.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924583|gb|ADH85393.1| OmpA/MotB domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 288 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + + LQ I +L + + I+GHTD+ A N +LS RA S Sbjct: 185 LFDYDRATLQQASSKQLQGIVTLLHDHPDLRLEIQGHTDSD---GSAAYNLQLSQRRAES 241 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L+ G+ R+ G+ +D + NRR++++ Sbjct: 242 VLNYLLLFGIDPSRLKS-KGYGETMPVAPNDTAENKAKNRRVELV 285 >gi|254302656|ref|ZP_04970014.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322848|gb|EDK88098.1| hypothetical protein FNP_0283 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 157 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ FD S PE +L+ I E + + I+I GHTD+ + A N++ Sbjct: 28 TIVLDERALNFDFDKSNVKPEYYDLLKNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G++EDRI I + ++ + NRR++ + R+ Sbjct: 85 LSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRE 142 >gi|282881335|ref|ZP_06290015.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1] gi|281304811|gb|EFA96891.1| OmpA family protein [Prevotella timonensis CRIS 5C-B1] Length = 225 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 9/146 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K+++ + V + V+ V T + G+ + + +F S +I + L K Sbjct: 70 MDKVAAETAAQVENAKVEEV---TDKNGLKAVKVTFDSGILFASSKAILNQASKNELAKF 126 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL + + + I GHTD++ I N LS DRA S L GVS + +SG Sbjct: 127 STVLKKNRDCHVDILGHTDSTGNDGI---NIPLSNDRAQSVVNYLKSCGVSSSQFQNVSG 183 Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338 + ++ NRR+++ + Sbjct: 184 MGSSQPVATNETKAGRQQNRRVEVYL 209 >gi|150007641|ref|YP_001302384.1| outer membrane lipoprotein [Parabacteroides distasonis ATCC 8503] gi|149936065|gb|ABR42762.1| outer membrane protein, putative OmpA domain protein [Parabacteroides distasonis ATCC 8503] Length = 445 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE++ + +I +++ + + S+ GHTD++ N LS R+ + Sbjct: 344 FDVGKSTIKPESMGEINRIVKLMTDNPDLRFSVEGHTDST---GNEASNQTLSEARSNAI 400 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L++ G+S DR+S SG + D + NRR++ + Sbjct: 401 VGKLVELGISADRLSA-SGKGQSSPIADNGTDEGRAKNRRVEFV 443 >gi|329297799|ref|ZP_08255135.1| putative outer membrane lipoprotein [Plautia stali symbiont] Length = 177 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD SS+ P L + VL Sbjct: 40 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDSSSANLKPAGANTLTGVAMVLKEY 98 Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G TD++ R + N RLS RA S L+ GV+++R+ + G Sbjct: 99 PKAAVNVVGFTDSTGTRAL---NMRLSQQRAESVASALIVQGVAQNRL-RTQGMGPDNPV 154 Query: 322 IASDPMN--SANRRIDI 336 ++ + NRR++I Sbjct: 155 ASNSTEAGKAQNRRVEI 171 >gi|254510549|ref|ZP_05122616.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11] gi|221534260|gb|EEE37248.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11] Length = 223 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 17/204 (8%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + + G + + + L + +L A ++ Sbjct: 30 PADPNQNAKQGALLGGLIGAGVGAIANDSDPLLGALAGGAIGAAGGGVIGNQLDRQAAEL 89 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ G++ +++++ N F SS P L ++G+ L Sbjct: 90 RQQLAN-------DGIIITNAGDRLIVTV---PNDITFATDSSTVNPALRADLVRVGQNL 139 Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + GHTD++ A N LS RA S +L +GV+ R+S I G + Sbjct: 140 VRYPNSSVQVIGHTDST---GEASYNQGLSERRARSVADILQANGVNGARLSTI-GLGEN 195 Query: 319 RLKIAS--DPMNSANRRIDILVED 340 R ++ + NRR+DI + Sbjct: 196 RPAASNLTPEGRARNRRVDIEIIP 219 >gi|330830616|ref|YP_004393568.1| putative porin [Aeromonas veronii B565] gi|328805752|gb|AEB50951.1| putative porin [Aeromonas veronii B565] Length = 512 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 19/168 (11%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETT----RTGILISIIDQRNTPMFDKSSSIP 244 + RLQ+L + + + + T G++ I D MF S+ Sbjct: 84 QSRLQELDRIAKEENLNIATEKLTVAEPSAVTGVPQDAGLVAQIPDS---GMFAIGSAQL 140 Query: 245 LPETIVVLQKIG-----EVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 + V+ K+ A ++ I + GH+DA+ A N RLS RA + + Sbjct: 141 TESGLRVVTKLAQLYSKPAAADASNARRILLVGHSDAT---GPAELNLRLSEQRARAVGK 197 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRIDIL-VEDRQG 343 +L+ SG+ I + + SDP + NRR++I+ + + Q Sbjct: 198 ILVASGIPASFIYYQGAGSSRPIADNSDPLLRGQNRRVEIVELANEQA 245 >gi|124004618|ref|ZP_01689462.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123989741|gb|EAY29270.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 247 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S T L I ++L + + I GHTD+ + N LSL RA Sbjct: 144 LFPSGSPQINSGTYTQLNAIVKLLKKYPKARLLIEGHTDSV---GNTQKNKALSLKRASF 200 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 ++ G++ R+ K+ G ++D S NRRI++ Sbjct: 201 VQAYFVRQGIAAHRL-KVIGKGATTPIASNDTAVGRSKNRRIEV 243 >gi|322417908|ref|YP_004197131.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320124295|gb|ADW11855.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 169 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P + I ++ + + GHTD N +LS DRA + Sbjct: 65 FKTGKAEVDPACDRTMTAIAAIMTDYPGFHVQVDGHTDNV---GKPEANMKLSQDRADAV 121 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + L K GV R+S GF + ++ + NRR+D V Sbjct: 122 VKYLAEKKGVDAKRLSA-KGFGDTQPIASNKTKAGQAKNRRVDFTV 166 >gi|163787037|ref|ZP_02181484.1| membrane protein, OmpA family [Flavobacteriales bacterium ALC-1] gi|159876925|gb|EDP70982.1| membrane protein, OmpA family [Flavobacteriales bacterium ALC-1] Length = 531 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 10/114 (8%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLD 290 + +FD S PE ++ L+++ + ++ + + I GHTD + +N LSL Sbjct: 422 DSKVLFDSGKSELKPEGLLALKELAKNISVLKSGNVIIEGHTDDV---GSSENNKNLSLA 478 Query: 291 RAYSAYQVLMKSGVSEDRIS--KISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA S L K + + + G+ + + ++ + NRR++IL+ Sbjct: 479 RAKSVSTELKK--LIPSKTFKWREKGYGEKKPLVENNSEKNRTKNRRVEILILP 530 >gi|78061843|ref|YP_371751.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77969728|gb|ABB11107.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 404 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 R +L LA+ + L VA V+ + ++ R + + + MF + P Sbjct: 254 RASQLDVLARNLEQQLRDEVAAGNVELIR-DSGRNALTLRF-----SGMFGPGEATVAPW 307 Query: 248 TIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGV 304 V+ G +A T+ + + G+ D++P + N LS RA Q+L+ +GV Sbjct: 308 GASVVASAGREIAAVTKGATLRVAGYADSTPISSTRQASNQVLSDVRARHVAQILVAAGV 367 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 S RI + G + + NRR+++ + D Sbjct: 368 SAPRI-SVEGNGDADSLADNGTASGRARNRRVEVTISD 404 >gi|260428759|ref|ZP_05782736.1| inner membrane lipoprotein YiaD [Citreicella sp. SE45] gi|260419382|gb|EEX12635.1| inner membrane lipoprotein YiaD [Citreicella sp. SE45] Length = 221 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V T +++++ +F S+ + ++ +G L Sbjct: 87 EAELRQQLGNNVSINNTGDRLVVTM---PQDILFPFDSAALRSDLQADIRTVGRSLLQYP 143 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + GHTD+ A N +LSL RA + VL+ GV RI I G + Sbjct: 144 NTTVQVLGHTDSD---GDAAYNQKLSLRRAQAVSSVLIAEGVPSSRIQSI-GRGEDQPIA 199 Query: 323 AS--DPMNSANRRIDILVED 340 ++ NRR++I++ Sbjct: 200 SNLTAEGKQQNRRVEIVILP 219 >gi|305665009|ref|YP_003861296.1| OmpA/MotB protein [Maribacter sp. HTCC2170] gi|88707423|gb|EAQ99668.1| OmpA/MotB [Maribacter sp. HTCC2170] Length = 404 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 10/144 (6%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVL-A 260 S AD + + I + + +F L + L ++ +L Sbjct: 263 SAEPADFVQNPTAIRNNDRNL-IVLNETHLFENVLFHFDKYDLLGQAKNELDRVYRILEN 321 Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 S+ ISI GHTD+ N LS RA S ++ G+S +RI +G Sbjct: 322 DSSLSISIYGHTDSV---GAESYNLELSKLRAKSVANYFVELGLSSNRIKS-TGKGSSEP 377 Query: 321 KIASDPMNSA--NRRIDILVEDRQ 342 ++ N NRR++ ++ +++ Sbjct: 378 IASNASENGRKMNRRVEFVLSNKK 401 >gi|300723714|ref|YP_003713021.1| putative outer membrane protein [Xenorhabdus nematophila ATCC 19061] gi|297630238|emb|CBJ90889.1| putative outer membrane protein [Xenorhabdus nematophila ATCC 19061] Length = 161 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%) Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 GL A+ I +K F+ T G + +F + S PE L+++ VL+ Sbjct: 27 GLTAEQITTLKQQGFQQTDEG---WLFGMSEKVLFGNNQSHLRPEGEAKLKELASVLSKV 83 Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + GHTD + ++ +N +LSL RA + L G+ ++ G + Sbjct: 84 GIHHARLDGHTDN--YGEVSYNN-QLSLKRANTVADALTDGGMQRANLT-TRGLGPSQPI 139 Query: 322 IASDP--MNSANRRIDILV 338 + + NRR+ I++ Sbjct: 140 ADNRSSKGRAENRRVAIVI 158 >gi|189219864|ref|YP_001940505.1| Flagellar motor protein [Methylacidiphilum infernorum V4] gi|189186722|gb|ACD83907.1| Flagellar motor protein [Methylacidiphilum infernorum V4] Length = 311 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 18/225 (8%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKIL 184 + E+ + N +Q ++ G L +L EK+ + +E + Sbjct: 60 KEEDELLKQENQKQRAVVDQLQAELAQTGSLLKSQEELLEKTTQSLKAVESKKRQEEAVS 119 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + ++A+K+++ + + + I+I + +F Sbjct: 120 THENFTLIHEMAQKLNALFAEEIQKGESWVI---QNPQNIVIRFS---KSALFSYGGIKI 173 Query: 245 LPETIVVLQKIGEVLAH-STE----VISIRGHTDASP----FRNIARDNWRLSLDRAYSA 295 +L+K+ L I + +TD P +N+ NW +S R+ + Sbjct: 174 SNSGKALLEKLITALKPYLDNSKEAKIEVCAYTDNDPPALEVQNVYPTNWEISAMRSAAV 233 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + L++ + I ++ + + NRR++I + Sbjct: 234 IRTLIQLSQLPEDIFSLAAGGATKPIADNSFQEGKEKNRRVEITL 278 >gi|146307120|ref|YP_001187585.1| OmpF family protein [Pseudomonas mendocina ymp] gi|145575321|gb|ABP84853.1| OmpF family protein [Pseudomonas mendocina ymp] Length = 327 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E+ ++ + + + + + + GHTD+ N LS RA + Sbjct: 220 FDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSV---GSDAYNQGLSERRANAV 276 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL+ + GV +R++ + G+ R A+D + NRR++ Sbjct: 277 RNVLVNQYGVDGNRVNAV-GYGETRPVADNATDSGRAINRRVE 318 >gi|255013830|ref|ZP_05285956.1| outer membrane lipoprotein [Bacteroides sp. 2_1_7] Length = 435 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE++ + +I +++ + + S+ GHTD++ N LS R+ + Sbjct: 334 FDVGKSTIKPESMGEINRIVKLMTDNPDLRFSVEGHTDST---GNEASNQTLSEARSNAI 390 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L++ G+S DR+S SG + D + NRR++ + Sbjct: 391 VGKLVELGISADRLSA-SGKGQSSPIADNGTDEGRAKNRRVEFV 433 >gi|124267239|ref|YP_001021243.1| outer membrane protein [Methylibium petroleiphilum PM1] gi|124260014|gb|ABM95008.1| outer membrane protein [Methylibium petroleiphilum PM1] Length = 235 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++++ + + + G D + T + +++ + FD S PE Sbjct: 83 KKMEEKRRAMEQSTQGTGVD------VTRTADNQLKLNV---PSDISFDTGKSAIKPELR 133 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL LA+ + + GHTD++ I LS+DRA S L G+ R Sbjct: 134 TVLDSFANGLANDPALQVRVIGHTDSTGSDAINNP---LSVDRAQSVRDYLAGRGILPTR 190 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 I SG H + + + NRR++IL+ + + Sbjct: 191 IE-TSGRGSHEPIADNTSEAGRAKNRRVEILLREPE 225 >gi|253699032|ref|YP_003020221.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251773882|gb|ACT16463.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 459 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE + +G + I GHTD N N LS RA S Sbjct: 228 FDIDKAEIRPEYKDEVATVGNFMKQYPTTTAVIEGHTDN--VGNPEY-NLDLSKRRAQSV 284 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 L+ + G+ R+ GF R A+ D ANRRI+ +++ Sbjct: 285 VDYLVDNYGIERSRLEA-RGFGMARPIAANSTDEGRQANRRIEAIID 330 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P + K+GE + I GHTD + N +LS RA +A Sbjct: 352 FDSGKADIKPLYRGEMAKVGEYMNKYPTTTAVIEGHTDNV---GGSDYNMKLSQQRAENA 408 Query: 296 YQVLMKS-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 Q L+++ G+ + R+S G+ + R ++ + NRRI+ +++ Sbjct: 409 VQYLVQNFGIDKSRLSA-KGYGYTRRIAYNSTPEGRAKNRRINAVID 454 >gi|189499949|ref|YP_001959419.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495390|gb|ACE03938.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides BS1] Length = 229 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 19/150 (12%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + D AK+I DN V G E GI + + D +F SS + Sbjct: 79 MDDQAKEI---------DNQVDGAQVERVGEGIRV-VFDT--GLLFSTGSSTLTSTSSYN 126 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +QK+ +L ++ I + GHTD+ N +LS RA S +L VS+ RIS Sbjct: 127 IQKLANILNKYSDTDIVVEGHTDSQ---GSETYNQQLSEKRAESVSSLLRAYNVSKSRIS 183 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338 I G+ R +++ + NRR+++L+ Sbjct: 184 TI-GYGETRPVASNETASGRKLNRRVEVLI 212 >gi|255594982|ref|XP_002536202.1| conserved hypothetical protein [Ricinus communis] gi|223520472|gb|EEF26178.1| conserved hypothetical protein [Ricinus communis] Length = 113 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 6/106 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F+ + S P+ + ++ VL+ + + + + GHTD N +LS RA S Sbjct: 2 LFNFNESSLRPDAGPAIARVVVVLSRTQKPMIVEGHTDNV---GTREYNQQLSEARAKSV 58 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L + G+S RI+ + G+A R +D + NRR +I+V+ Sbjct: 59 ANELERRGISASRITLV-GYAFDRPVADNDTPEGRARNRRTEIVVK 103 >gi|89056405|ref|YP_511856.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88865954|gb|ABD56831.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 658 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 94/300 (31%), Gaps = 14/300 (4%) Query: 49 LVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE---- 104 + + T + + + + + + + + + + + D+ Sbjct: 316 VTLIAAQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAAGPARFTATFDQAQGV 375 Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 + IG + Q ++ + ++ + R L + D Sbjct: 376 RLRGRLPGGAIGQSVQAFAAATFGAGTTDIATREVADLPQGWSIRVMAGLTALSQLEDGV 435 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG- 223 +I + ++++ ++ +DL + + D + V + T Sbjct: 436 LTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDM-NVAYDEALDPVASQPTPQEC 494 Query: 224 -ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIA 281 I I FD S+ VL +I E+L + I GHTDA Sbjct: 495 EARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSMEIGGHTDAQ---GGE 551 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 N LS RA + L+ GV ++ G+ + ++ + NRRI+ + Sbjct: 552 TMNLNLSQSRANAVLNGLLARGVLVSNLAA-QGYGESQPIADNETEDGREQNRRIEFRLL 610 >gi|94970975|ref|YP_593023.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94553025|gb|ABF42949.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 407 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + + PE+ L ++G +L A+S+ + ++GHTD N LS RA S Sbjct: 299 LFDFNKATLQPESDGPLGQVGALLTANSSLNVEVQGHTDNV---GTDAYNQTLSEARAKS 355 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L + GV+ R++ G+ +D NRR++I Sbjct: 356 VMTWLTQHGVAPGRMTA-KGYGKTMPVADNKTDDGRMKNRRVEI 398 >gi|226946867|ref|YP_002801940.1| OmpA/MotB family protein [Azotobacter vinelandii DJ] gi|226721794|gb|ACO80965.1| OmpA/MotB family protein [Azotobacter vinelandii DJ] Length = 261 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 13/233 (5%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + + L+ N + + +E S + + Sbjct: 24 PNPNLEQARAAFTALQGNPRAGQLAPLETQDAAKQLKQAEDSYQSGASEERVDQLAYLTQ 83 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILISIID 230 + + +L ++ Q +++ + L A + + + T G L++ D Sbjct: 84 RRVEFAEQTILLRNAEREFQQTSSQRAEARLQARDAQIRQLQEELQASHTERGTLVTFGD 143 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 +FD + + P + +QK+ + L + + + + G+TD++ N LS Sbjct: 144 ----VLFDYNRAELKPGGMHNVQKLADFLRANPQRQVIVEGYTDST---GSDAYNRDLSE 196 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 RA + L+K G+ RI G + AS + NRR+++ + D Sbjct: 197 RRAGAVRIALIKMGIDPRRI-ATQGHGKNYPVTSNASPAGRAMNRRVEVTISD 248 >gi|160896293|ref|YP_001561875.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1] gi|160361877|gb|ABX33490.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1] Length = 244 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 16/152 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + ++ +++ G + + +T + + D + FD + S Sbjct: 72 QNMEKQKREMEQATQGTGVN------VSQTADNQLKL---DIPSDISFDTNRSDIKGNFA 122 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + E L ++ + I GHTD++ I LSLDRA S L GVS R Sbjct: 123 PILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LSLDRANSTRNYLTMRGVSGAR 179 Query: 309 ISKISGFAHHRLKIASD--PMNSANRRIDILV 338 I G H+ ++D + NRR++I V Sbjct: 180 I-ATEGRGSHQPVASNDSASGRAMNRRVEIFV 210 >gi|330504865|ref|YP_004381734.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328919151|gb|AEB59982.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 218 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 213 KGVLFETTRTGILISII---DQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAH-ST 263 + T G + + D M F +S+ L + V + Sbjct: 83 QEAKLRQTLQGTGVQVQRNGDDLKLIMPGNITFASNSADISSSFYPTLNSLVLVFKEFNK 142 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321 ++I GHTD++ N LS RA S L +GV RIS G + Sbjct: 143 NGVNIVGHTDST---GSQELNQSLSQRRAQSVANYLTANGVPGQRISA-YGAGPSQPIAS 198 Query: 322 IASDPMNSANRRIDI 336 A+D + NRR++I Sbjct: 199 NATDAGRAQNRRVEI 213 >gi|319638563|ref|ZP_07993325.1| hypothetical protein HMPREF0604_00949 [Neisseria mucosa C102] gi|317400312|gb|EFV80971.1| hypothetical protein HMPREF0604_00949 [Neisseria mucosa C102] Length = 226 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 E R G I ++ N F S+ + L + L + ++I GHT Sbjct: 90 NTNIEVERQGNQIKLVMPENVT-FATGSAALSGQAQSALSAAAQTLVQYPDTTLTINGHT 148 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D + N LS +RA S L GVS R+ G+ + ++ + Sbjct: 149 DNT---GNDAINEPLSRNRAESVATFLQSRGVSSTRL-STFGYGSRQPIASNATVEGRAQ 204 Query: 331 NRRIDILVEDRQ 342 NRR++IL+ Q Sbjct: 205 NRRVEILINPDQ 216 >gi|326772523|ref|ZP_08231807.1| hypothetical protein HMPREF0059_00908 [Actinomyces viscosus C505] gi|326637155|gb|EGE38057.1| hypothetical protein HMPREF0059_00908 [Actinomyces viscosus C505] Length = 417 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281 G +I++ D +FD SS E L + V+ S + I+GHTD+ + Sbjct: 298 GTVITLEDS---VLFDFGSSELRGEASTTLTNLATVIKDSKAPKVQIQGHTDSV---SDD 351 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRR 333 N +LS RA + L GV+ D + G+ + + +P NRR Sbjct: 352 AFNQKLSEQRAQAVSSALKSDGVAAD--LEAVGYGETKPVAPNENPDGSDNPAGRRLNRR 409 Query: 334 IDILV 338 +++ V Sbjct: 410 VEVFV 414 >gi|288959276|ref|YP_003449617.1| outer membrane protein [Azospirillum sp. B510] gi|288911584|dbj|BAI73073.1| outer membrane protein [Azospirillum sp. B510] Length = 146 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S++ PE+ VL K+ V+ + T I GHTDA N LS RA + Sbjct: 44 FDFNSAVIKPESRAVLDKVAAVMTTAGTTRFRIVGHTDAV---GGDAANLALSKRRAAAV 100 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + L + ++SG L + P +ANRR++I+ Sbjct: 101 VEYLASRHRIQRDRLEVSGMGARELLLPDQPTAAANRRVEII 142 >gi|157368311|ref|YP_001476300.1| putative outer membrane lipoprotein [Serratia proteamaculans 568] gi|157320075|gb|ABV39172.1| OmpA/MotB domain protein [Serratia proteamaculans 568] Length = 220 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR G I + N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + ++I G+TD++ R + LS RA L+ GV+ +R+ + SG Sbjct: 142 PKTAVNIIGYTDSTGSRALNMT---LSQQRADGVGSALITQGVAANRV-RTSGAGPDNPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTTEGKAQNRRVEITLSPLQ 220 >gi|253701635|ref|YP_003022824.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251776485|gb|ACT19066.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 432 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P+ L+ + + L I GHTD N +LS RA Sbjct: 326 FDTNKADLKPQYRAELKALADFLNEFPNATGVIEGHTDNV---GPKALNMKLSQLRADKI 382 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 L+K G++ +RI I G+ + ++ + NRRI+ Sbjct: 383 RNSLIKEFGIAPERIKAI-GYGPAKPVASNKDKAGKAKNRRIE 424 >gi|39995916|ref|NP_951867.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA] gi|39982680|gb|AAR34140.1| OmpA domain protein [Geobacter sulfurreducens PCA] gi|298504930|gb|ADI83653.1| OmpA domain porin [Geobacter sulfurreducens KN400] Length = 466 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ ++++ + L I GHTD N RLS RA S Sbjct: 233 FDIDKADVRPQYHDEVKRVADFLKEYPSTTAVIEGHTDNV---GDDAYNMRLSQRRAESV 289 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 L+ + G+ R+S GF R + NRRI+ +++ Sbjct: 290 VNYLVDNFGIDRTRLSA-RGFGKTRPIADNSTEAGKQRNRRIEAIID 335 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 17/164 (10%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 K + +A + + ++I + + + D V L + + + FD Sbjct: 311 KTRPIADNSTEAGKQRNRRIEAIIDCALEDPKVIAALPDRLCIALKVQ---------FDT 361 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 P+ + K+G+ + + I GHTD A N +LSL RA + Sbjct: 362 DKWDIKPQYRGEIAKVGDFMTRNPTTTAIIEGHTDRV---GTADHNMKLSLRRAEAVVNY 418 Query: 299 LMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L++ G+ R+S G+ R ++ + NRRI+ +++ Sbjct: 419 LVEHFGIERSRLSA-KGYGFSRPIAYNSTAEGRALNRRINAIID 461 >gi|293609016|ref|ZP_06691319.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829589|gb|EFF87951.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 217 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L KK+ ++G GV G + I+ + FD + S P Sbjct: 77 LDQKEKKLRQQMAGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + LA + I + G+TD + N LS RA S L GVS RI Sbjct: 128 LNKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVRSYLASQGVSASRID 184 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ + + NRR++I + +Q Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217 >gi|316935074|ref|YP_004110056.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602788|gb|ADU45323.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 446 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283 ++ + F++ S++ + +L K+ + I + G+TDA Sbjct: 333 RVTAVASAEKINFERRSAVIDKASQPLLGKLAAAIKQCPAVTIEVAGYTDA---AGKKST 389 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N LS RA + L K+G+ ++ G+ + ++D + NRRI+ +V+ Sbjct: 390 NLALSKRRAEAVVASLTKAGIGSVKLVA-EGYGSAKPIASNDTAEGRAQNRRIEFVVK 446 >gi|163757275|ref|ZP_02164371.1| OmpA/MotB [Kordia algicida OT-1] gi|161322760|gb|EDP94113.1| OmpA/MotB [Kordia algicida OT-1] Length = 617 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 225 LISIIDQ---RNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 +++I D FD SS +L I L + ISI GH D+ R Sbjct: 497 VVTIPDPAVGERKVYFDFDSSKLDQNAKEILDNIAANLKNDAGYNISIIGHADS---RGT 553 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 R N +LS++RA + L +S I+ I+G + + NRR+++++ Sbjct: 554 DRYNDKLSVERAQAIKNYLDSKKLSNSNIT-ITGKGESAPIAPNTTPEGRAKNRRVELII 612 >gi|78778212|ref|YP_394527.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251] gi|78498752|gb|ABB45292.1| OmpA/MotB [Sulfurimonas denitrificans DSM 1251] Length = 348 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S ++ +++ E L I GHTD+ +DN +LS +RA S Sbjct: 245 FDTASYKVDNASMPKVKEFAEFLKDMPNYNAKIVGHTDSV---GSDKDNQKLSENRANSV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 +++K G+ RI+ G +D + NRRI+ Sbjct: 302 KTLIVKEGIDTKRIT-TEGKGEKSPIATNDTKEGKAQNRRIE 342 >gi|317014225|gb|ADU81661.1| flagellar motor protein MotB [Helicobacter pylori Gambia94/24] Length = 257 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKTTIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKTTIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|256839827|ref|ZP_05545336.1| outer membrane lipoprotein [Parabacteroides sp. D13] gi|298375585|ref|ZP_06985542.1| OmpA family protein [Bacteroides sp. 3_1_19] gi|256738757|gb|EEU52082.1| outer membrane lipoprotein [Parabacteroides sp. D13] gi|298268085|gb|EFI09741.1| OmpA family protein [Bacteroides sp. 3_1_19] Length = 428 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE++ + +I +++ + + S+ GHTD++ N LS R+ + Sbjct: 327 FDVGKSTIKPESMGEINRIVKLMTDNPDLRFSVEGHTDST---GNEASNQTLSEARSNAI 383 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L++ G+S DR+S SG + D + NRR++ + Sbjct: 384 VGKLVELGISADRLSA-SGKGQSSPIADNGTDEGRAKNRRVEFV 426 >gi|149922900|ref|ZP_01911321.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149816217|gb|EDM75723.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 517 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 86/260 (33%), Gaps = 36/260 (13%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 DE PE S D+ N + ++ + + + + Q Sbjct: 289 DEDGCPEPDSDG-DGFIDDKDTCPNEAETVNDYQDEDGCPESDRDGDGFWDD--QDSCPD 345 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + T + K +D C +D + +E P + ++ K++++ Sbjct: 346 EAETVNDYKDEDGCPESDRDGDGILDELDKCPDEPETANGYQDEDGCADEVPKEVAAFT- 404 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 +KG+ F+ S + L K +VL + Sbjct: 405 -----GAIKGIT--------------------FETDSDKIRKSSTRTLDKAVKVLTDFPD 439 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I + GHTD+ R N LS RA S L++ G+ RI+ GF + Sbjct: 440 IRIKVTGHTDS---RGDHDHNVDLSKRRAESVKTYLVEHGIDASRIT-TDGFGPDKPVDT 495 Query: 324 SDP--MNSANRRIDILVEDR 341 +D + NRRI+ + R Sbjct: 496 NDTRAGRANNRRIEFEIVQR 515 >gi|119472020|ref|ZP_01614278.1| putative lipoprotein [Alteromonadales bacterium TW-7] gi|119445155|gb|EAW26447.1| putative lipoprotein [Alteromonadales bacterium TW-7] Length = 210 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 E R G + ++ N F S L I +V+ + +S+ GHTD++ Sbjct: 85 VEVVREGDNLRLVIPSNIT-FATDQSYISTGFNDTLNAIAKVMNKYEKTYLSVEGHTDST 143 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 N LS +RA S L + RI SGF R +D N + NRR Sbjct: 144 ---GQDSYNMNLSRERAQSVKAYLANQDIMAARI-STSGFGETRPIATNDTANGRAQNRR 199 Query: 334 IDI-LVEDRQG 343 ++I +V + +G Sbjct: 200 VEIQIVPNTEG 210 >gi|299770927|ref|YP_003732953.1| OmpA family protein [Acinetobacter sp. DR1] gi|298701015|gb|ADI91580.1| OmpA family protein [Acinetobacter sp. DR1] Length = 471 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 17/225 (7%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 T+Q + + SL +K +++ + +P Sbjct: 259 DTSQTYAASFTDKDALAGVLGALKGVPNASLEWVGDKITLKAGDAAALEALTAKVKALVP 318 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + ++ + + + L + +N+ L + + + II+ Sbjct: 319 HTEVVGAAPVTAEQSVSNSLTASQTALGSIDPNNVDVNALVK----ALNLQIIN------ 368 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS + +L + +L T +++ GHTD++ A N LS RA + Sbjct: 369 FASGSSDIPADNKAILDQAATLLNKVTSVKLNVGGHTDST---GNAAANKALSQRRAQAV 425 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L GV ++ G + + NRRI+ V Sbjct: 426 VDYLKSKGVDASKLVA-EGHGSDQPVAENTTEEGRFKNRRIEFSV 469 >gi|254508437|ref|ZP_05120557.1| outer membrane protein OmpA [Vibrio parahaemolyticus 16] gi|219548647|gb|EED25652.1| outer membrane protein OmpA [Vibrio parahaemolyticus 16] Length = 323 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +SS PE+ L ++ + + + G+TD++ A N +LS RA + Sbjct: 215 FELNSSKLKPESTQKLNELVAFMNQYPQSTVEVVGYTDST---GAAAYNQKLSEKRAQAV 271 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L G+ RI+ +SG + +++ NRR+++ V Sbjct: 272 ANELEAQGIDASRIT-VSGQGENNPVASNETKEGRMMNRRVEMTV 315 >gi|332525185|ref|ZP_08401360.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108469|gb|EGJ09693.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 211 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR+++ + + +G D + T + +++ + F + P Sbjct: 70 KRMEEKRRAMEQATAGTGID------VARTPDNELKVNV---PSDLSFAVGRADLQPSLR 120 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL + + L + + I GHTD++ N LSL RA + L GV R+ Sbjct: 121 PVLDQFAKGLDQTM-HVRIVGHTDST---GSDAINDPLSLARARTVRDYLEDRGVPAARL 176 Query: 310 SKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 I+G + D + NRR++I + + Sbjct: 177 E-IAGRGSREPVADNGSDAGRAKNRRVEIFLRE 208 >gi|255624443|ref|XP_002540477.1| Inner membrane lipoprotein yiaD precursor, putative [Ricinus communis] gi|223495460|gb|EEF21906.1| Inner membrane lipoprotein yiaD precursor, putative [Ricinus communis] Length = 225 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 11/196 (5%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + R ++ + ++ + ++ E + R + Sbjct: 27 NAARQRDEIRLQARTAEANQARMSAEQAKAQADQAKADADAARAQADAAANSAREEQAKN 86 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-E 264 + + + T G++I++ D +F+ + E + QK+ +VL Sbjct: 87 AALQQQLADLQAKQTDRGLIITLND----VLFNVDRAELSAEGMRTAQKLADVLLQEPQS 142 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 V+ + G TD++ + N LS RA + L+ GV ++I G+ ++ Sbjct: 143 VVLVEGFTDST---GTSSHNLDLSQRRAEAVRNALIGLGVPGNKI-ATRGYGEAYPVASN 198 Query: 325 DPMNSA--NRRIDILV 338 S NRR++I++ Sbjct: 199 ADAGSRQLNRRVEIVL 214 >gi|159025748|emb|CAO02048.1| outer membrane protein A [Bordetella holmesii] Length = 163 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE +L ++ + I GHTD+ A N +LS RA S Sbjct: 59 FFDFDKSVLKPEGRQLLDQVAQQAKAIDLETIIAVGHTDS--IGTEAY-NLKLSDRRAAS 115 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L+ G+ +RI G + + + NRR++I + Sbjct: 116 VKAYLVSKGIDPNRIY-TEGKGEAQPIATNKTAEGRARNRRVEIEI 160 >gi|325525950|gb|EGD03642.1| putative OmpA/MotB family outer membrane protein [Burkholderia sp. TJI49] Length = 405 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 12/159 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +R LA+ + L VA V+ + + R + + + MF + Sbjct: 252 QAQRMSPFDSLARDLEQRLRDEVAAGNVELIR-DPGRHALTLRFV-----GMFVPGAVTV 305 Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301 P V+ G +A E V+ + G+ D++P + + N LS RA + ++L+ Sbjct: 306 APWGASVVASAGREIASIAEGTVVRVVGYADSAPAGSARQVSNQALSEARAENVARILVA 365 Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 +G+ ++ G + + + NRR++++V Sbjct: 366 AGIPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403 >gi|107103038|ref|ZP_01366956.1| hypothetical protein PaerPA_01004107 [Pseudomonas aeruginosa PACS2] Length = 314 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I ++L I + GH+D N LS RA + Sbjct: 171 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 227 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + L +GV E +I+ + + +A++ + NRR+ + + R+ Sbjct: 228 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 276 >gi|166714357|gb|ABY87945.1| outer membrane protein [Acinetobacter sp. bm-8] Length = 355 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 +I ++ FD + S + + K+ E L I GHTD + + Sbjct: 226 VIEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLNEYPNATARIEGHTDNT---GPRKL 282 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 N RLSL RA S L+ + GFA + ++ + NRR+ Sbjct: 283 NERLSLARANSVKSALVSEYNIDSSRLAAQGFAWDQPIADNNTKEGRAMNRRV 335 >gi|85714945|ref|ZP_01045930.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85698142|gb|EAQ36014.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 209 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 15/179 (8%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 ++ LS +I+ + R + L+ + +LS N+ + + +G + Sbjct: 25 KDQALAGELSARQIVDSLKAPRTRSLSVEERPSLSADELTNLTRIRRTRSLSSGDRAQMA 84 Query: 230 DQRN-------TPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRN 279 + FD S+ + L +G+ L + VI + GHTDA + Sbjct: 85 EIAGKRPGVDLQIYFDFDSAELSAKAEPQLNNLGQALTSPELAGSVIMLGGHTDA---KG 141 Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 R N LS RA + + L++ +S + + + G+ RLK +DP + NRR++I+ Sbjct: 142 SDRYNQSLSERRAETIKRFLIERYKISPENLVAV-GYGESRLKNKADPDAAENRRVEIV 199 >gi|254779211|ref|YP_003057316.1| flagellar motor protein MotB [Helicobacter pylori B38] gi|254001122|emb|CAX29077.1| Chemotaxis protein MotB (Motility protein B) [Helicobacter pylori B38] Length = 257 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ GV Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDNTPLTKTRFKSHYELAANRAYRVMKVLMQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|255531842|ref|YP_003092214.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344826|gb|ACU04152.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 445 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 26/298 (8%) Query: 63 KAIEQYFNPFGKN---LMTASKGIFDEQNPPERSSQN-------KIDLSIDEHITKNSVD 112 KA Y N ++A++G + P + +DL D + K+ Sbjct: 151 KAGAGYMNAGATTTNVPLSANEGYKERWFVPVGAGFKLGVAKGINVDLGYDVNFVKSDKF 210 Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN-KEE 171 S + ++ + + S++ +N + + + + +S +L ++++ E+ Sbjct: 211 DGFNSGGKNDKFSYGHIGLEFALGSKEKPQLQNYSSLANLRKQSKEESDELRRALSTAEQ 270 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI---VKGVLFETTRTGILISI 228 N K + + + K T SG V D +K T ++++ Sbjct: 271 NAARDREQYAKDMGDDDNDGVANKFDKCPGTASGTVVDGSGCPIKVQREVIKETKVVVTE 330 Query: 229 IDQR------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR 282 D++ FD + ++ L K+ +L + + GHTD + Sbjct: 331 ADRKVVDEAIKNLEFDLGKATIRAKSYATLNKVAALLIEKNFSLKLAGHTDNT---GSMA 387 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N RLS +RA + L+ G + RI +G+ ++ ++ NRR++ + Sbjct: 388 LNLRLSKERAEAIKAYLVSQGANASRIEA-TGYGPNQPIASNKTAEGRQKNRRVEFTL 444 >gi|309782736|ref|ZP_07677457.1| OmpA family protein [Ralstonia sp. 5_7_47FAA] gi|308918514|gb|EFP64190.1| OmpA family protein [Ralstonia sp. 5_7_47FAA] Length = 274 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 19/157 (12%) Query: 185 AMKRKKRLQDLAKKISSTLS---GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 +R++ D+A + + + GL + + L + T +I F+ S Sbjct: 126 EAQRQQLTSDMATALGQSYTIKNGLRVAAVSEQGLLDQTLANRIIE---------FETGS 176 Query: 242 SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P+ +L ++ VL I I GHTD N LS RA + L+ Sbjct: 177 ATLTPKGRAILDEMAAVLPRLNGRKIEIVGHTDN---SGSRALNLNLSQARAETVKNYLI 233 Query: 301 KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 G + ++ + G + A+ D S NRRI+ Sbjct: 234 AKGAEQGTLTAM-GVGPDQPVAANNTDEGRSRNRRIE 269 >gi|311746921|ref|ZP_07720706.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1] gi|126578612|gb|EAZ82776.1| putative outer membrane protein, OmpA family [Algoriphagus sp. PR1] Length = 562 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 115/313 (36%), Gaps = 43/313 (13%) Query: 37 YADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 +AD MT + I Q F+ ++ K + D N Sbjct: 280 FADLMT-----------FSTKVPLE---IPQEFSTAPPAILPPKKALADVSN-------- 317 Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 + S +E +T + K + ++++ ++ +E D Sbjct: 318 --NKSSNEEVTLAPIYPKSSIGKPEVSMEQIQQMAEAKPVAEVTEAQTPEENPVEWLVLD 375 Query: 157 LCKST--DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK----ISSTLSGLVADN 210 ST D E +N + S L+ ++ + + K L+ + Sbjct: 376 GKNSTRLDYEMKFFNGKNEVIFEDSSAYTLSFLKESNVNLIKVKSAGFFPKELTLKDINP 435 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHST-EVISI 268 + K V+ T + +++ N F + ++ ET VL ++ E L+ ++ + I Sbjct: 436 LDKTVVLMTKLESGSVLLLENVN---FKRGTAELEGEETEAVLSELAEFLSENSSVKLRI 492 Query: 269 RGHTDASPFRNIARD-NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASD 325 GHTD N LSLDRA S L+ GV+ + + +I+G+ R A++ Sbjct: 493 NGHTDG----GGDPSLNKGLSLDRARSVRDYLVDHGVTFENL-RIAGWGGTRPIASNATE 547 Query: 326 PMNSANRRIDILV 338 S NRR+++ V Sbjct: 548 SGRSKNRRVELEV 560 >gi|298481010|ref|ZP_06999205.1| lipoprotein PG3 [Bacteroides sp. D22] gi|298273033|gb|EFI14599.1| lipoprotein PG3 [Bacteroides sp. D22] Length = 255 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 83 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 131 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 132 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 191 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 192 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 238 >gi|294506240|ref|YP_003570298.1| Outer membrane protein A [Precursor] [Salinibacter ruber M8] gi|294342568|emb|CBH23346.1| Outer membrane protein A [Precursor] [Salinibacter ruber M8] Length = 285 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 10/133 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D + E GI ++ + +FD SS E L + E + + I Sbjct: 140 DEELDNADVERVGEGIKVTF---DSGILFDFDSSTLRAEARQNLTEFAESMQGFEDTKIL 196 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 + GHTDA N +LS RA SA + L+ GV R++ + G +++ Sbjct: 197 VVGHTDAQ---GSEEYNQKLSDRRAESATRHLVDRGVDPSRLTSV-GRGETEPVASNETE 252 Query: 328 NSA--NRRIDILV 338 NRR+++ + Sbjct: 253 EGRQQNRRVEVAI 265 >gi|86606634|ref|YP_475397.1| OmpA family protein [Synechococcus sp. JA-3-3Ab] gi|86555176|gb|ABD00134.1| OmpA family protein [Synechococcus sp. JA-3-3Ab] Length = 273 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 82/278 (29%), Gaps = 22/278 (7%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 F ++ GI+ P+ + + + T + Sbjct: 11 ATVFLNLSSGILLVGSGIWAGMVLPQPLQTQPLPVPQPQANTPPLLPTLSPPQASLPAVS 70 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 ++ N S + + ++ L +E+ ++ + P + E Sbjct: 71 PDADSPKGNPNHGGSTDLEREIRELRQQAIQL--LIRVEELESRLQRLSSPAAAPEPRRE 128 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + + + + G + + +FD + Sbjct: 129 SATTAEIAPEGASVPAPTATPTPTSFQVGTRTISLPGDL-----------LFDFDKAEIR 177 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +L ++ + L + + GHTD N LSL RA + L + + Sbjct: 178 PEAASLLAEVAKSLREMPGARVQVNGHTDNI---GSLNYNLDLSLRRANAVKDYL-ANLL 233 Query: 305 SEDRISK--ISGFAHHRLKIASDPM--NSANRRIDILV 338 ED SGF +D NRR+D+++ Sbjct: 234 PEDHPISWTTSGFGPTLPVADNDTEEGRQRNRRVDLII 271 >gi|34763981|ref|ZP_00144872.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886240|gb|EAA23525.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 315 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + + GHTD+ + N Sbjct: 204 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNRI 260 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 LS +RA + L G++ + I G+ R ++D NRR++I++ Sbjct: 261 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTAEGKQKNRRVEIII 312 >gi|149279062|ref|ZP_01885196.1| outer membrane protein, OmpA/MotB family [Pedobacter sp. BAL39] gi|149230341|gb|EDM35726.1| outer membrane protein, OmpA/MotB family [Pedobacter sp. BAL39] Length = 439 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 ++D+ + FD ++ ++ L ++ +L + + GHTD + N Sbjct: 328 RVVDEAIKNLEFDLGKAVIRQKSYATLNRVAALLIEKNFSLKLAGHTDNT---GSMALNL 384 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 RLS DRA S L+ G + RI +G+ ++ + ANRR++ + Sbjct: 385 RLSKDRAESVKAYLVSQGANASRIEA-TGYGPNQPIATNKTAAGRQANRRVEFTL 438 >gi|90578362|ref|ZP_01234173.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components [Vibrio angustum S14] gi|90441448|gb|EAS66628.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components [Vibrio angustum S14] Length = 508 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 40/122 (32%), Gaps = 12/122 (9%) Query: 227 SIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I + P +F S P L E L+H I + GHT R N Sbjct: 388 EIGTLKTRPVIFSSGSERLTPNGQQQLNLTAESLSHYPNFRILVEGHT---GLRGDKALN 444 Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA---NR--RIDILV 338 LS RA + L+ G RI + G I + NR R++I + Sbjct: 445 IELSAKRAKAVKSYLVNQLGFEASRIHAV-GKGSDEPLIQLSGESQRRYANRLMRVEIAL 503 Query: 339 ED 340 Sbjct: 504 MS 505 >gi|19705338|ref|NP_602833.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19705349|ref|NP_602844.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713317|gb|AAL94132.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713330|gb|AAL94143.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 151 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L I E + + I+I GHTD+ + A N++ Sbjct: 28 TIVLDERSLNFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 85 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142 >gi|90426398|ref|YP_534768.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90108412|gb|ABD90449.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 464 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + P+++ +L ++ E L T I I GHTD N LS RA + Sbjct: 363 FESGRATIDPDSVGLLDRLIETALRCPTATIEIAGHTDGD---GDGAFNQTLSEKRAQAV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 + ++++G+ +R + G+ +D + NRRI+ +V Sbjct: 420 AEYMVRAGLPAERFRPV-GYGSTTPVAPNDNDEGKAQNRRIEFMV 463 >gi|237740698|ref|ZP_04571179.1| outer membrane porin F [Fusobacterium sp. 2_1_31] gi|229422715|gb|EEO37762.1| outer membrane porin F [Fusobacterium sp. 2_1_31] Length = 340 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL I G+TD+ N Sbjct: 229 LITSDSGILFDVDKYDVRPEDKEVLKNLATVLKEMNVKNFEIDGYTDSD---GSDEHNQV 285 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS RA S L+ GV+ + G+ + ++D NRR++I++ Sbjct: 286 LSEKRANSVKNFLVSQGVTAE--ITTKGYGESKPVASNDTAEGRQKNRRVEIII 337 >gi|302878485|ref|YP_003847049.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581274|gb|ADL55285.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 347 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS+ P L ++ + A ++I GHTD+ R + N +LSL RA S Sbjct: 235 FDTSSAKIKPAADKKLNEVVDFAAKYKESNLAISGHTDS---RGSEKLNQKLSLSRAESV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L+K GVS RI+ G A R + + NRR++I Sbjct: 292 KAYLVKKGVSAARIT-TKGEASTRPVADNKTKAGRAQNRRVEI 333 >gi|319796494|ref|YP_004158134.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315598957|gb|ADU40023.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 188 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 18/156 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPET 248 RL L + ++ G GV+ E T + + I N FD + Sbjct: 46 ARLAALKTDLEASTKGT-------GVVIEQTADNQLHVVI---PNELSFDTGRANVKRNL 95 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL K+ E L +T + + GHTDA+ N RLS+ RA S L+ GVS Sbjct: 96 AQVLDKVAEGLKSATAASVRVVGHTDAT---GSEEGNERLSVSRADSVRNHLVGRGVSTT 152 Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 I+ G + + NRR++I V ++ Sbjct: 153 AIT-TDGRGSREPLADNGTAAGRAQNRRVEIFVAEK 187 >gi|330503542|ref|YP_004380411.1| OmpF family protein [Pseudomonas mendocina NK-01] gi|328917828|gb|AEB58659.1| OmpF family protein [Pseudomonas mendocina NK-01] Length = 326 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E+ ++ + + + + + + GHTD+ N LS RA + Sbjct: 219 FDFDKDRVKEESYGDIKNLADFMNQYPQTTTTVEGHTDSV---GSDAYNQGLSERRANAV 275 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL+ + GV R++ + G+ R A+D + NRR++ Sbjct: 276 RNVLVNQYGVDGSRVNAV-GYGETRPVADNATDSGRAINRRVE 317 >gi|296271167|ref|YP_003653799.1| OmpA/MotB domain-containing protein [Thermobispora bispora DSM 43833] gi|296093954|gb|ADG89906.1| OmpA/MotB domain protein [Thermobispora bispora DSM 43833] Length = 176 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 18/151 (11%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-----RNTPMFDKSSSIPLPETIVVLQ 253 I ++ L + ++ + + + D+ + +F + + Sbjct: 26 IQESIRDLAVSDFIRDLTLTIEPLEVETQVGDRTTVSISSDVLFAFDKADLTEVAKRRIA 85 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 ++ + L + V+ + GHTDA A N RLS RA + + L K+ V +I + Sbjct: 86 ELAKRLQNVKGVVLVEGHTDAL---GSAAYNLRLSRLRANAVKEELSKA-VPGLQIKAV- 140 Query: 314 GFAHHRLKIAS-------DPM-NSANRRIDI 336 G+ R + +P + NRR+ I Sbjct: 141 GYGETRPIAPNKTKDGKDNPEGRAKNRRVTI 171 >gi|114569157|ref|YP_755837.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114339619|gb|ABI64899.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 227 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 8/140 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + R G + +I F +S+ + +L + VL Sbjct: 89 QETAMREALSDTGVGVRREGNDLRLI-MPGDVTFATNSADIQGQFYGILSDVSTVLNRYP 147 Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + GH D+ A N +LS RA S L+ GV DR I+G Sbjct: 148 ATYVDVVGHADSV---GAADYNQQLSERRALSVGNYLIAQGVLRDRFY-IAGMGERSPIA 203 Query: 323 ASDPMNSA--NRRIDILVED 340 +++ NRR++IL+ Sbjct: 204 SNETAAGRQQNRRVEILIRP 223 >gi|254255311|ref|ZP_04948627.1| Outer membrane protein [Burkholderia dolosa AUO158] gi|124901048|gb|EAY71798.1| Outer membrane protein [Burkholderia dolosa AUO158] Length = 232 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 I++ N FD + P+ L + + +T ++I G+TD++ A Sbjct: 122 RITLDSDAN---FDTDRATLKPDARDRLDVLIDAARGTTFQTVAIAGYTDST---GTAEH 175 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N RLS RA + Q L + G+ + + G+ + + NRR+DI +E Sbjct: 176 NQRLSERRAQAVAQYLREHGLRAQKFD-VRGYGESNPVATNTTAAGRAKNRRVDITLE 232 >gi|283835926|ref|ZP_06355667.1| OmpA family protein [Citrobacter youngae ATCC 29220] gi|291068103|gb|EFE06212.1| OmpA family protein [Citrobacter youngae ATCC 29220] Length = 220 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR+G I I++ N FD +SS P L + VL Sbjct: 83 VQEAKLREKMQGTGVSVTRSGDNI-ILNMPNNVTFDSNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G TD++ N RLS RA S L+ GV+ +RI + G Sbjct: 142 DKTAVNVLGFTDST---GSQDLNMRLSQQRADSVASALITQGVAANRI-RTQGMGPANPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTAEGKAQNRRVEITLSPVQ 220 >gi|295691294|ref|YP_003594987.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756] gi|295433197|gb|ADG12369.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756] Length = 224 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 9/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G R G I ++ + FD S P + VL + L + I + G Sbjct: 94 LEGSGVMIRRNGDQIVLV-MPSDVTFDVDRSDIQPRFVRVLDDVARTLNAYPQTTIDVVG 152 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDP--M 327 H D+ N LS RA + L G V DR+ ++G + + Sbjct: 153 HADS---SGADEYNQVLSERRASAVAGYLTSQGRVLPDRVF-VAGMGERQPIADNSTAAG 208 Query: 328 NSANRRIDILVED 340 + NRR++I++ Sbjct: 209 RAENRRVEIVLRP 221 >gi|297380015|gb|ADI34902.1| flagellar motor protein MotB [Helicobacter pylori v225d] Length = 255 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLIKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKSKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|325121713|gb|ADY81236.1| OmpA/MotB domain protein [Acinetobacter calcoaceticus PHEA-2] Length = 255 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 39/186 (20%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + D++ +I + PP L++ + ++ + D+ +K + Sbjct: 106 MLNPADIQPTIQSFQGLVQPPYQLYSQLSVNQAEQ--------------KIIDDALKNRI 151 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 E F+ S++ +L ++ L + I GHTD+ Sbjct: 152 IE------------------FESGSAVLTDAGQKILDEMAIALNKVGGKKVKIVGHTDS- 192 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 A N +LS DRA + L+ + D + G + + NRR Sbjct: 193 --SGDATKNLKLSQDRALAVKNYLISKSIPADHL-STEGLGSSKPVADNTSPEGRKKNRR 249 Query: 334 IDILVE 339 I+ V Sbjct: 250 IEFTVL 255 >gi|126643008|ref|YP_001085992.1| putative lipoprotein precursor [Acinetobacter baumannii ATCC 17978] gi|184159508|ref|YP_001847847.1| outer membrane protein [Acinetobacter baumannii ACICU] gi|183211102|gb|ACC58500.1| Outer membrane protein [Acinetobacter baumannii ACICU] Length = 126 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290 +FD + + L ++ L + I GHTD N N +LS + Sbjct: 19 PERLLFDFNDATLKQSHEAELTRLANQLNKYDLNKLKIVGHTDD--VGNPEY-NQKLSEE 75 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 RA S + + G ++ I + G + + + + + NRR+ I++ Sbjct: 76 RAQSVANLFLTHGFKKENIY-VIGRGSTQPYVPNTTNENRAINRRVAIVIIP 126 >gi|326799764|ref|YP_004317583.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326550528|gb|ADZ78913.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 169 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 11/132 (8%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TE-VISIR 269 ++G T G++++ + +F +SS + V ++ + + + I I Sbjct: 44 IEGGTVSRTDEGVVLTF---ESDVLFATNSSYLSEKAKVTMKNMVAYINKNYPNAQIQIN 100 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTD++ + W LS RA S + G++ I K G+ + + + Sbjct: 101 GHTDST--GEADYNQW-LSEKRAASVKNYAVSIGLNGSNI-KTKGYGKSKPVATNSTADG 156 Query: 330 A--NRRIDILVE 339 NRR+++++ Sbjct: 157 RQKNRRVEVIIL 168 >gi|332879337|ref|ZP_08447034.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682757|gb|EGJ55657.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 422 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S E+ L ++ L + I ++GHTD N +LS RA + Sbjct: 321 FDFGKSTIKTESYAYLNRLANTLVRTHARIEVKGHTDNV---GTEEFNMKLSHKRAQAVV 377 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L+ GV +D++ S + + +D NRR++ + Sbjct: 378 DYLIGRGVDKDKL-SYSYYGMSKPLTTNDTEEGRTMNRRVEFEIL 421 >gi|332533226|ref|ZP_08409093.1| putative lipoprotein [Pseudoalteromonas haloplanktis ANT/505] gi|332037305|gb|EGI73760.1| putative lipoprotein [Pseudoalteromonas haloplanktis ANT/505] Length = 210 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 E R G + ++ + F S L I +V+ + +SI GHTD++ Sbjct: 85 VEVVREGDNLRLV-MPSNITFATDQSYISSGFNDTLDAIAKVMNKYEKTYLSIEGHTDST 143 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 N LS +RA S L+ + +R+ G+ R +D N + NRR Sbjct: 144 ---GKDSYNMNLSRERAQSVKNYLVNQQIMAERV-STMGYGETRPIATNDSANGRAQNRR 199 Query: 334 IDILVED 340 ++I + Sbjct: 200 VEIQIVP 206 >gi|325121211|gb|ADY80734.1| OmpA domain protein [Acinetobacter calcoaceticus PHEA-2] Length = 217 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 16/190 (8%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + KS + +L L KK+ ++G GV Sbjct: 41 GAAAGYGISKSNANSSRQNNRAAAIGAVLGAAGGVYLDQKEKKLRQQMAGT-------GV 93 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDA 274 G + I+ + FD + S P L K+ + LA + I + G+TD Sbjct: 94 DVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYATLNKVAQTLAEDNKSAILVTGYTDN 151 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 + N LS RA S L GVS RI G+ + + NR Sbjct: 152 T---GNDSINIPLSQARAQSVRSYLASQGVSASRIDA-QGYGSSNPIADNSTASGREQNR 207 Query: 333 RIDILVEDRQ 342 R++I + +Q Sbjct: 208 RVEISIYAKQ 217 >gi|124005143|ref|ZP_01689985.1| outer membrane protein, putative [Microscilla marina ATCC 23134] gi|123989395|gb|EAY28956.1| outer membrane protein, putative [Microscilla marina ATCC 23134] Length = 329 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L ++ ++L I I HTD+ R N RLS RA S Sbjct: 226 FATKSARLNTHSFEELGRVVKLLKDHPTSHILIEAHTDSDGTRLA---NLRLSQQRAKSV 282 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 Y LMK G++ R+ + G + ++ + NRR +++V + Sbjct: 283 YNYLMKQGIAAQRL-QTRGAGELKPIAPNNTEINKARNRRFELIVMKK 329 >gi|110638581|ref|YP_678790.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281262|gb|ABG59448.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 694 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 11/133 (8%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVIS 267 + + + TG I + N FD S E+ L + E++ + T I Sbjct: 567 KELERNLYLAPLITGQTIRL----NNLFFDTGKSDLRKESYAELNRTVELMKLYLTMTIE 622 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD +N LS +RA + L+ G+ R+ G+ + +D Sbjct: 623 ISGHTDNV---GGDAENQTLSENRAKAVVNYLVSHGIDASRVQS-KGYGKTKPVSTNDTD 678 Query: 328 NSA--NRRIDILV 338 + NRR+D + Sbjct: 679 HGRQLNRRVDFTI 691 >gi|83952523|ref|ZP_00961254.1| OmpA domain protein [Roseovarius nubinhibens ISM] gi|83836196|gb|EAP75494.1| OmpA domain protein [Roseovarius nubinhibens ISM] Length = 203 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 10/145 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L D V T + I+ +F SS L + Sbjct: 64 LDKQAAELERDLNNDSVTVNNTGDRL---IVTMPQDILFAIDSSTVNSGLRGDLLTVARS 120 Query: 259 LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + GHTD + A N LS RA + VLM GV+ RI + G Sbjct: 121 LQSYPDTTVQVVGHTDNT---GSAAHNQALSERRANAVADVLMNGGVAFSRI-QTYGRGE 176 Query: 318 HRLKIAS--DPMNSANRRIDILVED 340 + ++ + NRR++I++ Sbjct: 177 DQPLASNLTAEGRAQNRRVEIVILP 201 >gi|115375600|ref|ZP_01462857.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|310823151|ref|YP_003955509.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|115367376|gb|EAU66354.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|309396223|gb|ADO73682.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 249 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + + E L + + + S+ I+++GH D R N +LS RA + Sbjct: 150 FGFNEASLSSEAQSRLSALADCIKASSGRITLQGHADE---RGTEEYNLQLSNSRASAVK 206 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI-ASDPMN-SANRRID 335 + L GV +R++ + G+ R ASD + NRR++ Sbjct: 207 RYLTTLGVPANRLATV-GYGETRPLNSASDEEAWAQNRRVE 246 >gi|312195438|ref|YP_004015499.1| OmpA/MotB domain protein [Frankia sp. EuI1c] gi|311226774|gb|ADP79629.1| OmpA/MotB domain protein [Frankia sp. EuI1c] Length = 440 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288 + +F SS P + + + ++ ++I G+TD+ DN LS Sbjct: 177 FRLPSDVLFAFGSSTLSPSAARAIDALAHQITATSGTVTIAGYTDSI---GTDADNQALS 233 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRRIDILVED 340 L RA + Q + + + D K GF + +P + NRR+++ V+ Sbjct: 234 LARASAVRQA-IAATLGPDFTYKAVGFGETSPVAPNTHQDGSDNPDGRARNRRVELTVDA 292 Query: 341 RQG 343 G Sbjct: 293 ATG 295 >gi|262407869|ref|ZP_06084417.1| outer membrane protein [Bacteroides sp. 2_1_22] gi|294646781|ref|ZP_06724404.1| OmpA family protein [Bacteroides ovatus SD CC 2a] gi|262354677|gb|EEZ03769.1| outer membrane protein [Bacteroides sp. 2_1_22] gi|292637941|gb|EFF56336.1| OmpA family protein [Bacteroides ovatus SD CC 2a] Length = 255 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 83 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 131 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 132 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 191 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 192 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 238 >gi|242309709|ref|ZP_04808864.1| cadf [Helicobacter pullorum MIT 98-5489] gi|239523710|gb|EEQ63576.1| cadf [Helicobacter pullorum MIT 98-5489] Length = 308 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS PE +Q E + + + +I GHTD++ N +LS RA S Sbjct: 204 FPSDSSSVNPEYYPEIQDFAEYMKQNPDKTATISGHTDST---GSEAYNQKLSERRAISV 260 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + ++K G+S DR+ G+ + + ANRR++ Sbjct: 261 KEEIVKQGISPDRLD-TKGYGEEKPIATNKTKEGRQANRRVE 301 >gi|85704529|ref|ZP_01035631.1| hypothetical protein ROS217_05604 [Roseovarius sp. 217] gi|85670937|gb|EAQ25796.1| hypothetical protein ROS217_05604 [Roseovarius sp. 217] Length = 321 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I+ + F +S+ + +L + +++ + I I GHTD+ A Sbjct: 207 RFDILSRTGNIYFKPASAQLDGASGPLLDAVAQIVTRCPDLTIQIAGHTDSF---GSAAA 263 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 N LS RA S L VS R+ + G+ R +++ NRRI+ + D Sbjct: 264 NQTLSERRAQSVVDYLATRDVSPSRLIAL-GYGETRPVADNSTEQGRRENRRIEFSISD 321 >gi|34763583|ref|ZP_00144517.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886747|gb|EAA23886.1| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 157 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L+ I E + + I+I GHTD+ + A N++ Sbjct: 28 TIVLDERSLHFDFDKSNVKPQYYDLLKNIQEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 85 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142 >gi|288927544|ref|ZP_06421391.1| lipoprotein PG3 [Prevotella sp. oral taxon 317 str. F0108] gi|288330378|gb|EFC68962.1| lipoprotein PG3 [Prevotella sp. oral taxon 317 str. F0108] Length = 225 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A+ + + E T G+ + + +F + + + L K +V Sbjct: 70 MDKVAKRTAEQVKNAKVEEVTDANGLKAVKVTFDSGILFATNKATLNQSSKNELAKFSQV 129 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + I GHTD + I N LS RA S L GV + K+ G Sbjct: 130 LKENRDCHVDIYGHTDNTGNDGI---NIPLSNSRAQSVVNYLANCGVPRSQFQKVEGKGS 186 Query: 318 HRLKIASDPMNSA--NRRIDILVEDRQG 343 ++ + NRR+++ + + Sbjct: 187 SDPVASNSTASGRQQNRRVEVYLYASKA 214 >gi|323700000|ref|ZP_08111912.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323459932|gb|EGB15797.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 192 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E+ +L I E + S+ +S+ GHTD + N+ LS+ RA Sbjct: 91 FHSDSTRLTDESKALLPDILESWRSRSSRDVSVVGHTDTL---GEKQYNYDLSVRRAEKV 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 +L+K G+ ED I +++ I + NRR+++LV Sbjct: 148 RDLLVKGGMPED-IIEMTSHGEENPLIPTPDGRSEPRNRRVEVLV 191 >gi|15611819|ref|NP_223470.1| flagellar motor protein MotB [Helicobacter pylori J99] gi|298736519|ref|YP_003729045.1| chemotaxis protein MotB [Helicobacter pylori B8] gi|12229872|sp|Q9ZL29|MOTB_HELPJ RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|4155316|gb|AAD06331.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylori J99] gi|298355709|emb|CBI66581.1| chemotaxis protein MotB [Helicobacter pylori B8] Length = 257 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|19703598|ref|NP_603160.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713702|gb|AAL94459.1| Outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 157 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L I E + + I+I GHTD+ + A N++ Sbjct: 28 TIVLDERSLNFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA S L++ G+SEDRI I + + + NRR++ + R+ Sbjct: 85 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQRE 142 >gi|115523809|ref|YP_780720.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115517756|gb|ABJ05740.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 446 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 9/108 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E++ VL+K+G +L I + GHTD N LS RA + Sbjct: 343 FQPRSAEISKESLPVLEKLGAILVQCPAVTIEVAGHTDG---GGKKAKNQALSERRAEAV 399 Query: 296 YQVLMKS--GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L K+ GV +++ + G+ + ++D + NRRI+ +V+ Sbjct: 400 VASLTKAKIGVGSAKLTAV-GYGSAKPIASNDTPEGRANNRRIEFVVK 446 >gi|257125214|ref|YP_003163328.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257049153|gb|ACV38337.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 173 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I+ N FD +S+ E VL+K+ + ISI G+TD+ + N L Sbjct: 63 IVLDANALKFDFNSATIKEEYTPVLEKLKNYIESKNHKISITGYTDS---KGTKEYNREL 119 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 SL RA S + L++ G++ ++I + G ++D S NRRI+I Sbjct: 120 SLRRAESVEEKLIELGLAPEKIIETKGNGDANPIASNDTEEGRSVNRRIEI 170 >gi|282877937|ref|ZP_06286746.1| OmpA family protein [Prevotella buccalis ATCC 35310] gi|281299938|gb|EFA92298.1| OmpA family protein [Prevotella buccalis ATCC 35310] Length = 227 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K++ + V + V+ V + + ++ + +F S + + L K Sbjct: 72 MDKVAQETAAQVENAKVEEVKDKNGLDAVKVTF---DSGILFASSKANLNQTSKNELAKF 128 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VL ++ + I + GHTD++ I N LS DRA S L GV + + G Sbjct: 129 STVLKNNKDCHIDVYGHTDSTGNDGI---NIPLSNDRARSVVNYLKSCGVPSSQFQNVVG 185 Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338 + + NRR+++ + Sbjct: 186 QGSTQPVADNATKAGRQLNRRVEVFL 211 >gi|238757311|ref|ZP_04618497.1| Inner membrane lipoprotein yiaD [Yersinia aldovae ATCC 35236] gi|238704350|gb|EEP96881.1| Inner membrane lipoprotein yiaD [Yersinia aldovae ATCC 35236] Length = 226 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD SS P L + VL Sbjct: 90 VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 148 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N LS RA S L+ GV+ +RI + SG Sbjct: 149 DKTAVNVTGYTDST---GARAHNMTLSQQRADSVGSTLIVQGVAANRI-RTSGAGPDNPV 204 Query: 322 IASDPMN--SANRRIDILV 338 + + NRR++I + Sbjct: 205 ATNSTAAGKAQNRRVEITL 223 >gi|256419485|ref|YP_003120138.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256034393|gb|ACU57937.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 225 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ A++I + V E GI ++ + +F S + Sbjct: 74 KKMDKQAQEIKTE---------VPNATVERVGEGINVTF---ASGVLFGFDKSDLTGQAQ 121 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ + +L + + + GHTD + N LS RA + L GV+ R Sbjct: 122 QNIKDLATILNKYPDTYVRVEGHTDTT---GTDSYNMGLSERRANAVATYLKSQGVAASR 178 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + + + + + + D + NRR++ + Sbjct: 179 V-QTFWYGARQPVVPNNSDANKAKNRRVEFSI 209 >gi|253990531|ref|YP_003041887.1| hypothetical protein PAU_03057 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638897|emb|CAR67512.1| similar to putative membrane protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781981|emb|CAQ85145.1| similar to putative membrane protein [Photorhabdus asymbiotica] Length = 583 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 14/191 (7%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 +EKG L E Y+ + L + + +RL+ ++ + ++ VA Sbjct: 368 AITEKGHRAQAVAVLRADDKLLEAYYRDGVPWRLGLGLYQGERLR---PRLQAAIASDVA 424 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVIS 267 + K + IS+ + +FD + T V++ + + A +I+ Sbjct: 425 EPSEKKPVTTAVPQ--TISL---NSLALFDVGQAKLKVGSTKVLVNALINIRAKPGWLIA 479 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASD 325 I G+TD++ A N LSL RA + L+++ + G R ++ Sbjct: 480 ITGYTDST---GDAAKNRALSLARAEAVRDWLLQTSDIPLACFAVQGEGATRPVATNSTA 536 Query: 326 PMNSANRRIDI 336 +ANRR++I Sbjct: 537 AGRAANRRVEI 547 >gi|332292401|ref|YP_004431010.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170487|gb|AEE19742.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 652 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 11/112 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + P+ + L KI +L+ I I HTDA R N LS RA S Sbjct: 542 FFDLNKDYIRPDAAMELNKIVTLLSQQPSIEIRIESHTDA---RADDNYNMELSQRRAIS 598 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 L++ G++++RI GF +L + + NRR + ++E Sbjct: 599 TKNYLIRQGIAKERILSAQGFGETQLLNDCSNGVQCDEVQHQINRRSEFIIE 650 >gi|330814653|ref|YP_004362828.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3] gi|327374645|gb|AEA65996.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3] Length = 421 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 12/154 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + L + L +A V+ + T + R M+ P V Sbjct: 275 IDRLGAALGEQLRDEIAAGNVELIKDTAADT------VTLRFNGMYASGDVTVAPWWASV 328 Query: 252 LQKIGEVLAHST--EVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + +G +A S + I G+TD P N LS RA Q+ +GV ++R Sbjct: 329 MASVGRAIASSPATTHVLITGYTDNLPASPAHQGSNHALSTARAQQVAQIFAVAGVPKER 388 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 I + G + + + NRR+++ V + Sbjct: 389 I-SVVGQSDADPLADNVSKEGRARNRRVEVTVSN 421 >gi|325275242|ref|ZP_08141202.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] gi|324099634|gb|EGB97520.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] Length = 231 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ L I L + +S+ GHTD+ N +LS RA+S Sbjct: 127 FEFDSARLTATDKERLNTIATRLKQEAPSARLSVSGHTDSV---GSDSYNQKLSERRAHS 183 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 L++SGV + G + A+ + NRR +I ++ Sbjct: 184 VTDYLVQSGVPRSSFVSVVGAGETQPVADNATAEGRAMNRRTEIKIQR 231 >gi|295134535|ref|YP_003585211.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294982550|gb|ADF53015.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 232 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 R+ AKKI + + G E GI ++ D+ + F ++ Sbjct: 78 NRMDKQAKKIETEVPGA---------EVERVGEGINVT-FDENSGVYFATEKYNINAKSE 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ + + I + GHTD + N LS +RA + L G++ R Sbjct: 128 ETLNKLANIFKEYPDTNILVEGHTDNT---GSESYNLTLSKNRAQAVTNFLTDHGIAASR 184 Query: 309 I-SKISGFAHHRLKIASDPMNSANRRIDILV 338 +K G A + ++ S NRR++I + Sbjct: 185 FDTKWYGEAQPKYDNSTAEGRSKNRRVEIAI 215 >gi|224023377|ref|ZP_03641743.1| hypothetical protein BACCOPRO_00070 [Bacteroides coprophilus DSM 18228] gi|224016599|gb|EEF74611.1| hypothetical protein BACCOPRO_00070 [Bacteroides coprophilus DSM 18228] Length = 239 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 20/181 (11%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 KS + +L K+ + A++I V DN + T +GI Sbjct: 52 KSAAIGAAVGAAVGTGAGVLIGKKMDKAAQQAQQIEGAEVEQVTDNNGLQAVKVTFDSGI 111 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIAR 282 +F SS+ L K VL + + ++I G+TD +RN + Sbjct: 112 -----------LFTTSSATLSSAAKASLSKFANNVLNQNRDMDVAIYGYTDNQGWRNSTK 160 Query: 283 D-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 + N LS +RA S L+ GVS +I + G +++ NRR++ Sbjct: 161 EQSVQKNLNLSQERAQSVSSYLLGCGVSASQIKSVEGMGESNPVADNSTEAGRQENRRVE 220 Query: 336 I 336 + Sbjct: 221 V 221 >gi|159025750|emb|CAO02049.1| outer membrane protein A [Bordetella holmesii] Length = 177 Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE +L ++ + I GHTD+ A N +LS RA S Sbjct: 70 FFDFDKSVLKPEGRQLLDQVAQQAKAIDLETIIAVGHTDS--IGTEAY-NLKLSDRRAAS 126 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342 L+ G+ +RI G + + + NRR++I +V R+ Sbjct: 127 VKAYLVSKGIDPNRIY-TEGKGEAQPIATNKTAEGRARNRRVEIEIVGSRR 176 >gi|315224547|ref|ZP_07866374.1| OmpA family protein [Capnocytophaga ochracea F0287] gi|314945568|gb|EFS97590.1| OmpA family protein [Capnocytophaga ochracea F0287] Length = 230 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ AKKI + G + GI+++ + FD + ++ Sbjct: 75 NQMDKQAKKIEEEIPGAD---------VKRVDDGIVVTFDENNGGVYFDTNKYNINNKSR 125 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ +L + + + GHTD N LS RA + G++ R Sbjct: 126 QTLDKLSAILKEYPDTNVIVAGHTDNV---GKDEYNLGLSQRRAQAVTNYFKSKGLAGSR 182 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + +++ + NRR+++++ + Sbjct: 183 FT-TKWYGERNPVASNETADGRAKNRRVNVVIVPNE 217 >gi|326773949|ref|ZP_08233231.1| hypothetical protein HMPREF0059_02355 [Actinomyces viscosus C505] gi|326636088|gb|EGE36992.1| hypothetical protein HMPREF0059_02355 [Actinomyces viscosus C505] Length = 505 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ P L+ + LA ++I GHTD N LS RA + Sbjct: 216 FASDSADLAPGAEAQLKTVAGQLAQYPDGGTLTIVGHTDDVQ---DDAYNQTLSEKRANA 272 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 L + + + +SG K+ D + NRR++I + G Sbjct: 273 VKTRLAQLTTLDKWQTSVSGKGESEPKVKDTSDEARAVNRRVEITLTPTGG 323 >gi|110639902|ref|YP_680112.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110282583|gb|ABG60769.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 505 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 11/129 (8%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + + +G I + +F+++S L ++ L ++ V+ +I + GH Sbjct: 382 RIIELSKLSSGTNILLH----NVLFERTSYELLSSSLPALDQLVTVMNQYPGMIIELSGH 437 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 TD A+ N LS +R SA + L+ G+S DRI + G+ ++D + Sbjct: 438 TDNV---GSAKKNMELSKNRVESAKKYLVSKGISADRIKSV-GYGSKYPVASNDGEQTRK 493 Query: 331 -NRRIDILV 338 NRR+++ + Sbjct: 494 YNRRVELRI 502 >gi|149276390|ref|ZP_01882534.1| possible outer membrane protein [Pedobacter sp. BAL39] gi|149232910|gb|EDM38285.1| possible outer membrane protein [Pedobacter sp. BAL39] Length = 620 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 L + K + E + + FD + LPE++ L + +L + Sbjct: 485 PLTTGSSSKPFVVEIYLQKLKVGTNMVLKNIFFDTNDFKLLPESVSELSTLLNLLKSNPN 544 Query: 265 V-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 V + I+GHTD + N +LSL+RA + Y+ L+ + + R+ + G+ + +A Sbjct: 545 VQMEIQGHTDNV---GNDQLNEQLSLNRAKAVYEYLLDNQIDPQRL-QYKGYGAKKPVVA 600 Query: 324 SDPMNSA--NRRIDILV 338 +D ++ NRR ++ Sbjct: 601 NDTEDNRRLNRRTSFVI 617 >gi|310818068|ref|YP_003950426.1| chemotaxis MotB protein [Stigmatella aurantiaca DW4/3-1] gi|309391140|gb|ADO68599.1| chemotaxis MotB protein [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF---RNIARDNWRLSLDRA 292 F+ S P VL + G VLA + + HTD P +W LS RA Sbjct: 144 FEPGQSNLTPRGTEVLARAGAVLAAVEGHTVEVAAHTDELPVPAEAETEGTSWELSTARA 203 Query: 293 YSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + L + ++++R+S +G A R + SD NRR+ +++ Sbjct: 204 ATVVRALHEGPARLAQERLSA-TGHASFRPVVPSDSPVNRLRNRRVTLMLRP 254 >gi|328947766|ref|YP_004365103.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489] gi|328448090|gb|AEB13806.1| OmpA/MotB domain protein [Treponema succinifaciens DSM 2489] Length = 490 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 14/146 (9%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + + + V TGI I++ + R F S LP+ + +I E L Sbjct: 346 QIKKYFFERKIPDVDLNEVLTGIQITMQNLR----FIADSYELLPQEKPRIAQIAESLKK 401 Query: 262 ST----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 +T I I GHT N LS+ RA + L+ +G+ ++ + GF Sbjct: 402 ATSSGEYTILIEGHTADVNKPNGQMT---LSIQRAQEIIKELVSNGIDKN-LFTYRGFGG 457 Query: 318 HRLKIASDP--MNSANRRIDILVEDR 341 + + + NRR++I++ + Sbjct: 458 TKPVADNSTPQGRALNRRVEIIIMPK 483 >gi|237747593|ref|ZP_04578073.1| outer membrane protein A [Oxalobacter formigenes OXCC13] gi|229378955|gb|EEO29046.1| outer membrane protein A [Oxalobacter formigenes OXCC13] Length = 207 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD SI PE L ++ + L+ + + GHTD + + N +LS RA + Sbjct: 98 FFDFDKSIVKPEGKAKLDELIKALSGMDTEVIVAVGHTD---WIGTDKYNQKLSERRANA 154 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L+ GV ++I G + ++ + NRR+++ V +G Sbjct: 155 VKAYLVSKGVPANKIF-TEGKGKKQPIASNKTREGRAKNRRVEVEVVANRG 204 >gi|91776742|ref|YP_546498.1| OmpA/MotB [Methylobacillus flagellatus KT] gi|91710729|gb|ABE50657.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 1402 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF----R 278 +L +++ F+ + ++ L+++ L I I GHTD R Sbjct: 103 VLTRLVENSGAAQFESGKADLTDSSVAALEQLAAQLQGKKNVRIDIAGHTDNQRLSPNAR 162 Query: 279 NIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 I RDN LS R+ + L K G+ + ++ ISG+ + ++D + NRR+ Sbjct: 163 KIFRDNQGLSEARSLAVAAFLKQKLGLEDSQL-SISGYGESQPVTSNDTPEGMAQNRRVI 221 Query: 336 ILV 338 I V Sbjct: 222 IRV 224 >gi|325106498|ref|YP_004276152.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324975346|gb|ADY54330.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 435 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Query: 218 ETTRTGILIS-----IIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 E R I+++ I+D+ + FD + + L ++ ++L + + GH Sbjct: 310 EIVREKIVVTEADRKIVDEAIKNLEFDLGKATIRSTSYATLNRVAQLLVEKNFSLKLAGH 369 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 TD + N RLS +RA S L+ G + RI +G+ + ++ Sbjct: 370 TDNT---GSMELNMRLSKERAESVKAYLVSQGANASRIEA-TGYGPTQPIASNKTAEGRQ 425 Query: 330 ANRRIDILV 338 NRR++ + Sbjct: 426 KNRRVEFTL 434 >gi|110678313|ref|YP_681320.1| OmpA family domain-containing protein [Roseobacter denitrificans OCh 114] gi|109454429|gb|ABG30634.1| OmpA family domain protein [Roseobacter denitrificans OCh 114] Length = 221 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 10/145 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L D V T +++S+ +F S P+ L + Sbjct: 82 LDQQEAELRRDLGNDDVQITNTGDRLIVSL---PQDLLFATDSFSVRPDLQNDLYTVAGS 138 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + I + GHTD+ A N RLS RA S +LM +GV+ R+ I G Sbjct: 139 LQNYPASTIQVIGHTDSD---GDAAYNQRLSERRAGSVAGILMDAGVTPSRLQTI-GRGE 194 Query: 318 HRLKIA--SDPMNSANRRIDILVED 340 + + ++ + NRR++I++ Sbjct: 195 SQPVASNLNEAGKAQNRRVEIIILP 219 >gi|108563226|ref|YP_627542.1| flagellar motor protein MotB [Helicobacter pylori HPAG1] gi|107836999|gb|ABF84868.1| flagellar motor rotation protein [Helicobacter pylori HPAG1] Length = 257 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N + G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKAIIARKGEGSVLEQIDQGSILKLPSNLLFENATSDSINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLVKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKAIIARKGEGS 107 >gi|310781368|gb|ADP24154.1| outer membrane protein A [Bordetella avium] gi|310781370|gb|ADP24155.1| outer membrane protein A [Bordetella avium] Length = 198 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE VL ++ + + I GHTD+ N +LS RA + Sbjct: 92 FFDFDKSTIKPEGRQVLDQVADTVQSIDLETLIATGHTDSI---GAEAYNQKLSERRANA 148 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ GV DRI G + ++ + NRR++I +V R+ Sbjct: 149 VKAYLVNKGVPADRIY-TEGKGEAQPVASNKTREGRAQNRRVEIEIVGSRK 198 >gi|228474126|ref|ZP_04058867.1| inner membrane lipoprotein YiaD [Capnocytophaga gingivalis ATCC 33624] gi|228274640|gb|EEK13481.1| inner membrane lipoprotein YiaD [Capnocytophaga gingivalis ATCC 33624] Length = 231 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 17/180 (9%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S E + + ++ AKKI + G + GI+ Sbjct: 54 SGGNSELGAVIGTAVGGAAGAVIGNQMDRQAKKIEEEIPGA---------EVKRVDDGIV 104 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 ++ D+++ F+ + + E +L K+ VL + + + GHTD+ + N Sbjct: 105 VT-FDEKSGVTFEFNKADLTSEAKTLLTKMAGVLKEYPDTNVIVAGHTDS---KGKPAYN 160 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 LS RA + SG+ R + F + +++ + NRR++I + + Sbjct: 161 MGLSERRAKAVTNFFTASGLKASRFT-TKWFGATQPAYDNSTEEGRAKNRRVNIAIVPNE 219 >gi|124004962|ref|ZP_01689805.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123989640|gb|EAY29186.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 645 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 12/111 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + +P+ L K+ +LA + + I GHTD+ + N +LS +RA + Sbjct: 539 FKEGKADVIPDMEADLDKLVILLADHPKLGLKISGHTDS---SGDSDANLKLSQNRADAI 595 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKI---ASDPMNSANRRID---ILVE 339 + ++ G R++ I G+ I +D NRR++ I +E Sbjct: 596 KKYIVDKGKFDPKRVTAI-GYGDTVPIIKSEKTDEDKKINRRVEFEIITIE 645 >gi|94500908|ref|ZP_01307434.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65] gi|94427027|gb|EAT12009.1| hypothetical protein RED65_11730 [Oceanobacter sp. RED65] Length = 2033 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF----RNIA 281 + P F S I ++ + E L + I + GHTD P R+I Sbjct: 832 EVHKPEEAPKFSSFSRDLSQADINAMKSVLEQLRGLEDLRIEVAGHTDNVPIAKRSRHIF 891 Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-L 337 +N+ LSL RA SA LM+ + ++++ ISG+ R ++ + NRR+++ + Sbjct: 892 NNNYELSLARARSAADYLMRELELGPEQVT-ISGYGSQRPVTNNGNEQSRALNRRVEVNI 950 Query: 338 VEDRQG 343 + R G Sbjct: 951 LAARDG 956 >gi|206580585|ref|YP_002236817.1| OmpA domain protein [Klebsiella pneumoniae 342] gi|206569643|gb|ACI11419.1| OmpA domain protein [Klebsiella pneumoniae 342] Length = 567 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + + + + +FD + T V++ + + A +I + G+TD + Sbjct: 420 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 476 Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + N +LSL RA + +L S + + G +D +ANRR++I Sbjct: 477 KKANQQLSLRRAEAVRDWMLQTSDIPAT-CFAVQGLGESHPAATNDTPEGRAANRRVEIS 535 Query: 338 VEDR 341 + R Sbjct: 536 LVPR 539 >gi|83945760|ref|ZP_00958104.1| OmpA family protein [Oceanicaulis alexandrii HTCC2633] gi|83850850|gb|EAP88711.1| OmpA family protein [Oceanicaulis alexandrii HTCC2633] Length = 217 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ VL + +VL + + GH D+ A N LS RA S Sbjct: 112 FATNSAQIDQRFGPVLNDVADVLMTYPATYVDVIGHADSV---GDASYNQTLSERRASSV 168 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV DR+ ++G + ++D +ANRR++I + Sbjct: 169 AAELIARGVMRDRLY-VAGMGESQPIASNDTDSGRAANRRVEIKI 212 >gi|322830754|ref|YP_004210781.1| OmpA/MotB domain protein [Rahnella sp. Y9602] gi|321165955|gb|ADW71654.1| OmpA/MotB domain protein [Rahnella sp. Y9602] Length = 220 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDTNSSTLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R + N +LS RA L+ GV R+ +G Sbjct: 142 PKTAVNVIGYTDSTGTRAL---NMKLSQQRADGVGSALITQGVEGSRVH-TTGAGPDNPI 197 Query: 322 --IASDPMNSANRRIDILVEDRQ 342 +++ + NRR++I + Q Sbjct: 198 AGNSTEAGKAQNRRVEITLSPLQ 220 >gi|237721048|ref|ZP_04551529.1| outer membrane protein [Bacteroides sp. 2_2_4] gi|293372983|ref|ZP_06619352.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] gi|229449883|gb|EEO55674.1| outer membrane protein [Bacteroides sp. 2_2_4] gi|292632051|gb|EFF50660.1| OmpA family protein [Bacteroides ovatus SD CMC 3f] gi|295084441|emb|CBK65964.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Bacteroides xylanisolvens XB1A] Length = 238 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 66 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 175 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 221 >gi|110638537|ref|YP_678746.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281218|gb|ABG59404.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 510 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%) Query: 212 VKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 K E TR L+ I ++ + F+ S LPE+ L K+ ++L + + I Sbjct: 378 SKNEYIEITRDYYLVPIEVGQSIKLNHIYFETSKYDLLPESYYELDKVVKLLRENPKMKI 437 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 I GHTD A N LS +RA S ++ G++ DRI+ GF + + +D Sbjct: 438 EIEGHTDNQ---GNADKNMILSQNRAKSVMDYIISKGITADRITS-KGFGITKPMVDNDT 493 Query: 327 --MNSANRRIDILVEDR 341 NRR++ + + Sbjct: 494 PENRQLNRRVEFTILQK 510 >gi|209809526|ref|YP_002265064.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] gi|208011088|emb|CAQ81507.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] Length = 222 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 14/209 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + +++ G+ S + + + ++ + A Sbjct: 18 QATQRQNATTGETETNSATKGALAGILAGVAVGLATGDNAKERRKNALIGAAAGGAVGGG 77 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256 G D+ + + E +G+ + + + F SS L + Sbjct: 78 VGYYFDSQEQALRDELKSSGVQVERVGDNELKLIMDNGVGFQSSSYQLDASIYNTLNGVA 137 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + + I GHTD+ N LS RA S L+K V+ R++ G+ Sbjct: 138 RILVEYPDTALQIDGHTDS---SGNDTKNQTLSEQRAESVRTYLIKQKVAAGRVNA-RGY 193 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + NRR++I + + Sbjct: 194 GERYPVFDNSTSQGRACNRRVEITILPLK 222 >gi|170025766|ref|YP_001722271.1| hypothetical protein YPK_3551 [Yersinia pseudotuberculosis YPIII] gi|169752300|gb|ACA69818.1| type IV / VI secretion system protein, DotU family [Yersinia pseudotuberculosis YPIII] Length = 536 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 362 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 418 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 419 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 478 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 479 AIGRGESDPLADNATEEGRKRNRRVDIL 506 >gi|91201036|emb|CAJ74094.1| hypothetical protein kuste3333 [Candidatus Kuenenia stuttgartiensis] Length = 395 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 15/126 (11%) Query: 220 TRTGILISIIDQRN-----TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 T G +I+D R F+ E L I +VL + + I I GHTD Sbjct: 274 TPEG---AIVDSRGCWVVKGIAFEYKKWDIKEEFESNLTNIVDVLEKNPDLQIRIEGHTD 330 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331 ++ N LS RA + L++ G+ E RI +GF + + + N Sbjct: 331 N--IGSMKY-NIDLSQKRALAVKDYLVEKGIHESRI-STTGFGFKHPIAPNVTEEGRALN 386 Query: 332 RRIDIL 337 RR +I+ Sbjct: 387 RRAEIV 392 >gi|194434867|ref|ZP_03067114.1| OmpA domain protein [Shigella dysenteriae 1012] gi|194416886|gb|EDX33008.1| OmpA domain protein [Shigella dysenteriae 1012] gi|332089116|gb|EGI94226.1| ompA family protein [Shigella dysenteriae 155-74] Length = 550 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKI 255 + I + + D E T + + + + +FD + T V++ + Sbjct: 399 EHIRQPVLRAIHDWRPPEQKMEVTAS-LQAQTVRLDSMSLFDVGQARLKDGSTKVLVDAL 457 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISG 314 + A +I + G+TDA+ + N +LSL RA + +L S + + G Sbjct: 458 VNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVRNWMLQTSDIPAT-CFAVQG 513 Query: 315 FAHHRLKIASDP--MNSANRRIDILVEDR 341 + +D + NRR+ I + R Sbjct: 514 LGESQPAATNDTPQGRAVNRRVKISLVPR 542 >gi|217034137|ref|ZP_03439557.1| hypothetical protein HP9810_868g30 [Helicobacter pylori 98-10] gi|216943421|gb|EEC22877.1| hypothetical protein HP9810_868g30 [Helicobacter pylori 98-10] Length = 255 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|257459102|ref|ZP_05624221.1| outer membrane fibronectin-binding protein [Campylobacter gracilis RM3268] gi|257443487|gb|EEV18611.1| outer membrane fibronectin-binding protein [Campylobacter gracilis RM3268] Length = 340 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS PE + ++ + +VL AH + + GHTD++ N +LS RA + Sbjct: 238 FATDSSKISPEFMNQIKNVSDVLVAHPDYKVILEGHTDST---GSNAYNQKLSERRAAAV 294 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 L GV RI+ + G+ + A+ + NRR+D Sbjct: 295 GGALKSFGVDASRITTV-GYGETKPIATNATKAGRAQNRRVD 335 >gi|145600375|ref|YP_001164451.1| OmpA-family membrane protein [Yersinia pestis Pestoides F] gi|145212071|gb|ABP41478.1| OmpA-family membrane protein [Yersinia pestis Pestoides F] Length = 529 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 355 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 411 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 412 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 471 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 472 AIGRGESDPLADNATEEGRKRNRRVDIL 499 >gi|108809572|ref|YP_653488.1| hypothetical protein YPA_3581 [Yersinia pestis Antiqua] gi|108810554|ref|YP_646321.1| OmpA-family membrane protein [Yersinia pestis Nepal516] gi|150260448|ref|ZP_01917176.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125] gi|165928091|ref|ZP_02223923.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937799|ref|ZP_02226360.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008916|ref|ZP_02229814.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211978|ref|ZP_02238013.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401306|ref|ZP_02306806.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421902|ref|ZP_02313655.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426473|ref|ZP_02318226.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467268|ref|ZP_02331972.1| hypothetical protein YpesF_05092 [Yersinia pestis FV-1] gi|218927713|ref|YP_002345588.1| hypothetical protein YPO0514 [Yersinia pestis CO92] gi|229836901|ref|ZP_04457066.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A] gi|229840403|ref|ZP_04460562.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842483|ref|ZP_04462638.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900741|ref|ZP_04515865.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516] gi|270487887|ref|ZP_06204961.1| OmpA family protein [Yersinia pestis KIM D27] gi|294502609|ref|YP_003566671.1| hypothetical protein YPZ3_0499 [Yersinia pestis Z176003] gi|108774202|gb|ABG16721.1| OmpA-family membrane protein [Yersinia pestis Nepal516] gi|108781485|gb|ABG15543.1| putative OmpA-family membrane protein [Yersinia pestis Antiqua] gi|115346324|emb|CAL19195.1| putative OmpA-family membrane protein [Yersinia pestis CO92] gi|149289856|gb|EDM39933.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125] gi|165914211|gb|EDR32827.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165919952|gb|EDR37253.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992255|gb|EDR44556.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206724|gb|EDR51204.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166960039|gb|EDR56060.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049331|gb|EDR60739.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054571|gb|EDR64379.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682080|gb|EEO78172.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516] gi|229690793|gb|EEO82847.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696769|gb|EEO86816.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705844|gb|EEO91853.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A] gi|262360640|gb|ACY57361.1| hypothetical protein YPD4_0452 [Yersinia pestis D106004] gi|270336391|gb|EFA47168.1| OmpA family protein [Yersinia pestis KIM D27] gi|294353068|gb|ADE63409.1| hypothetical protein YPZ3_0499 [Yersinia pestis Z176003] Length = 536 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 362 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 418 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 419 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 478 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 479 AIGRGESDPLADNATEEGRKRNRRVDIL 506 >gi|194291785|ref|YP_002007692.1| outer membrane protein; ompa/motb domain [Cupriavidus taiwanensis LMG 19424] gi|193225689|emb|CAQ71635.1| putative outer membrane protein; OmpA/MotB domain [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ P+ +L ++ VL + I I GHTD N LS RA + Sbjct: 170 FETGAATLTPKGRAILDEMAAVLPRLSGRKIEIVGHTDN---SGSRALNLTLSQARAETV 226 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 L+ G ++ + G + +D + NRRI+ Sbjct: 227 KNYLIGKGGEPGMLTAV-GVGPDQPVAPNDKEEGRAKNRRIE 267 >gi|322834544|ref|YP_004214571.1| OmpA/MotB domain protein [Rahnella sp. Y9602] gi|321169745|gb|ADW75444.1| OmpA/MotB domain protein [Rahnella sp. Y9602] Length = 165 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 7/110 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLD 290 +F + + E+ ++K+ L H +++ GHTD + + +N LSL Sbjct: 58 DAKVLFGNNQATLSTESKQSVEKLASELLHVGLNKVNLDGHTDN--YGDAGYNN-DLSLR 114 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 RA + +G+ I G + ++ + NRR+ +++ Sbjct: 115 RANTVAAAFADAGMPRANIH-TRGLGQSQPVASNKTQAGRAQNRRVSVII 163 >gi|146305280|ref|YP_001185745.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145573481|gb|ABP83013.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 317 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++ L +I ++L A + + + GHTDA N LS RA S Sbjct: 213 FDTDKADMRADSQPQLAEIAKLLQASAQLQVLVVGHTDAQ---GALDYNRDLSQRRAQSI 269 Query: 296 YQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337 + L+ G++ R+S + G A + + NRR++++ Sbjct: 270 VEALVSQHGIARQRLSAVGVGMAAPVASNRDEAGRALNRRVELV 313 >gi|209695291|ref|YP_002263220.1| outer membrane protein A [Aliivibrio salmonicida LFI1238] gi|208009243|emb|CAQ79504.1| outer membrane protein A [Aliivibrio salmonicida LFI1238] Length = 367 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284 +++ + +F S+ E I E L ++ +SI GHTD+ + N Sbjct: 247 LTLNELNGQALFGFDSAKLSSEVEAHFDSILERLKNNPTSELSIVGHTDSQ---GSDKYN 303 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 LSL RA S +G++ RI K+ G ++ S NRR+D++ Sbjct: 304 EGLSLRRAQSVANYFESNGIAMSRI-KVEGRGETDPVADNNTLKGRSMNRRVDLI 357 >gi|257470361|ref|ZP_05634452.1| Outer membrane porin F [Fusobacterium ulcerans ATCC 49185] gi|317064570|ref|ZP_07929055.1| outer membrane porin F [Fusobacterium ulcerans ATCC 49185] gi|313690246|gb|EFS27081.1| outer membrane porin F [Fusobacterium ulcerans ATCC 49185] Length = 186 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 11/166 (6%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 KE ++ + + + TL ++ N KGV +++S+ +FD Sbjct: 28 KELVIEETENQFVMEDIDVSKKTLEEIIVFN-EKGVTIRREGNNLVLSM---PELVLFDF 83 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + + L + + L + + I I G+TD F N LS+ RA + Sbjct: 84 NKYEVKNKIKGSLNALAKALEENPDIRIKIDGYTD---FIGSEGYNLELSVKRADAIKDY 140 Query: 299 LMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 L GV I I G+ ++ + + NRR++ ++ + Sbjct: 141 LTNKGVKASNI-SIEGYGKQNPIASNQTETGRAKNRRVEFIISRDK 185 >gi|332284746|ref|YP_004416657.1| outer membrane protein A precursor [Pusillimonas sp. T7-7] gi|330428699|gb|AEC20033.1| outer membrane protein A precursor [Pusillimonas sp. T7-7] Length = 192 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE VL ++ I GHTD+ N LS RA S Sbjct: 86 FFDFDKSTLKPEGRQVLDQVASQADTINLETLIATGHTDS--IGTEQY-NQGLSQRRANS 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ GV+ DRI + G ++ + NRR++I +V R+ Sbjct: 143 VKDYLVSKGVAADRIY-VEGKGETSPVASNSTREGRAQNRRVEIEIVGTRK 192 >gi|169634041|ref|YP_001707777.1| putative outer membrane protein [Acinetobacter baumannii SDF] gi|169152833|emb|CAP01862.1| putative outer membrane protein [Acinetobacter baumannii] Length = 217 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L KK+ ++G GV G + I+ + FD + S P Sbjct: 77 LDQKEKKLREQMAGT-------GVEVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + LA + I + G+TD + N LS RA S L GV RI Sbjct: 128 LDKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGVPSSRID 184 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ + + NRR++I + +Q Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217 >gi|42524180|ref|NP_969560.1| putative outer membrane protein [Bdellovibrio bacteriovorus HD100] gi|39576388|emb|CAE80553.1| putative outer membrane protein [Bdellovibrio bacteriovorus HD100] Length = 214 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266 + K + T G+ I ++ +FD + P + ++ ++ ++ Sbjct: 78 QKELAKIAETKRTEQGL---ITKLKSDILFDTGKADLKPAAQTNINQLAAIMKKYPENIL 134 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--S 324 +++G+TD + + + LS RA + L+ +GV ++ I G + Sbjct: 135 TVKGYTDDTGSQMVNNP---LSEQRAKAVSAQLVAAGVPAQTVTSI-GMGALNPVDPAKT 190 Query: 325 DPMNSANRRIDILV 338 + NRR++I + Sbjct: 191 KEARAKNRRVEIEI 204 >gi|51595006|ref|YP_069197.1| hypothetical protein YPTB0655 [Yersinia pseudotuberculosis IP 32953] gi|153950101|ref|YP_001402377.1| hypothetical protein YpsIP31758_3422 [Yersinia pseudotuberculosis IP 31758] gi|186894007|ref|YP_001871119.1| hypothetical protein YPTS_0678 [Yersinia pseudotuberculosis PB1/+] gi|51588288|emb|CAH19895.1| putative OmpA-family membrane protein [Yersinia pseudotuberculosis IP 32953] gi|152961596|gb|ABS49057.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758] gi|186697033|gb|ACC87662.1| type IV / VI secretion system protein, DotU family [Yersinia pseudotuberculosis PB1/+] Length = 536 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 362 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 418 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 419 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 478 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 479 AIGRGESDPLADNATEEGRKRNRRVDIL 506 >gi|162418688|ref|YP_001607328.1| hypothetical protein YpAngola_A2952 [Yersinia pestis Angola] gi|162351503|gb|ABX85451.1| OmpA domain protein [Yersinia pestis Angola] Length = 535 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 361 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 417 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 418 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 477 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 478 AIGRGESDPLADNATEEGRKRNRRVDIL 505 >gi|330009105|ref|ZP_08306392.1| OmpA family protein [Klebsiella sp. MS 92-3] gi|328534943|gb|EGF61477.1| OmpA family protein [Klebsiella sp. MS 92-3] Length = 567 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + + + + +FD + T V++ + + A +I + G+TD + Sbjct: 420 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 476 Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + N +LSL RA + +L S + + G +D +ANRR++I Sbjct: 477 KKANQQLSLRRAEAVRDWMLQTSDIPAT-CFAVQGLGESHPAATNDTPEGRAANRRVEIS 535 Query: 338 VEDR 341 + R Sbjct: 536 LVPR 539 >gi|329945590|ref|ZP_08293324.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528682|gb|EGF55644.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 321 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 22/240 (9%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP- 176 T++ + F Q++ + T +K D+ + N +P Sbjct: 56 TDRYTGADGVRLVDFDAGTVQETFKASSESTLLMDKEPDVTLHALFKPVDASTINVLVPE 115 Query: 177 -------PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL----FETTRTGIL 225 P+ ++ L+ KK L+D+ ST + + V T + Sbjct: 116 SGLFEGVPVVRDGKLSEDAKKALEDVY-DTESTPDPVALETFTASVDGASDTRVTGKSVT 174 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I++ +FD S+ + L+K + L+ ++I GHTD N Sbjct: 175 ITLASD---VLFDSDSADLSAQADTTLKKAADQLSTYPGGQVTIVGHTDDVA---DDAHN 228 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 LS RA + L + +SG ++ +D NRR++I + Q Sbjct: 229 QDLSQRRAQAVSDRLGQLASMSAYSVSVSGKGESEPRVPNDSDENRQLNRRVEITLVPTQ 288 >gi|157889001|dbj|BAF80950.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 19/161 (11%) Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 K K++++ AK+I + ++ + E T I F Sbjct: 175 KAPKTPQTTTKQIEEKPQAKQIDKSCPEPRKGALLDHIGCEKT--------IALEGHFGF 226 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296 D+ S PE +Q++G+VL + + +I GHTD++ N +LSL+RA + Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKVYNQKLSLERAKAVA 281 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L KSGV++++I G+ + K ++D + NRR++ Sbjct: 282 KELEKSGVAKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|148546401|ref|YP_001266503.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148510459|gb|ABQ77319.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 239 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 8/117 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I++ D MF S+ LQ + L T + + GHTD Sbjct: 127 VITL-DDNGAVMFAFDSAELTLAAQQRLQGLVAKLNSPTVTKVRVIGHTDGV---GSDSY 182 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 N LS RA S + L+ G+ +++ G ++ + NRR+++ + Sbjct: 183 NQALSERRASSVAEYLIGQGLEMGKVTS-QGRGESEPVTDNETEEGRARNRRVELHL 238 >gi|158522006|ref|YP_001529876.1| OmpA/MotB domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510832|gb|ABW67799.1| OmpA/MotB domain protein [Desulfococcus oleovorans Hxd3] Length = 388 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+++ + + ++ L ++ VL ++ E + ++GHTD+ R N LS RA + Sbjct: 286 FERARADIMADSFAKLDEVVTVLKNNPELRLEVQGHTDS---RGNPGFNQVLSEQRAGAV 342 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + + G++ DR+ GF + +D + NRR+++ Sbjct: 343 VRYFVSRGIAADRLVS-KGFGPSQPIADNDTAEGRAENRRVEL 384 >gi|115374815|ref|ZP_01462090.1| flagellar motor protein MotB [Stigmatella aurantiaca DW4/3-1] gi|115368211|gb|EAU67171.1| flagellar motor protein MotB [Stigmatella aurantiaca DW4/3-1] Length = 261 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF---RNIARDNWRLSLDRA 292 F+ S P VL + G VLA + + HTD P +W LS RA Sbjct: 121 FEPGQSNLTPRGTEVLARAGAVLAAVEGHTVEVAAHTDELPVPAEAETEGTSWELSTARA 180 Query: 293 YSAYQVLMKSG--VSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + L + ++++R+S +G A R + SD NRR+ +++ Sbjct: 181 ATVVRALHEGPARLAQERLSA-TGHASFRPVVPSDSPVNRLRNRRVTLMLRP 231 >gi|308062136|gb|ADO04024.1| flagellar motor protein MotB [Helicobacter pylori Cuz20] gi|308063396|gb|ADO05283.1| flagellar motor protein MotB [Helicobacter pylori Sat464] Length = 255 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLDKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|213156444|ref|YP_002318864.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057] gi|213055604|gb|ACJ40506.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057] Length = 255 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S++ +L ++ L E + I GHTD+ A N +LS DRA + Sbjct: 154 FESGSAVLTEAGQKILDEMAVALNKVGREKVKIVGHTDS---SGDATKNLKLSQDRALAV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 L+ + D + G + + NRRI+ V Sbjct: 211 KNYLISKNIPADHL-STEGLGSSKPVADNTSAEGRKKNRRIEFTVL 255 >gi|270264140|ref|ZP_06192407.1| hypothetical protein SOD_g00710 [Serratia odorifera 4Rx13] gi|270041789|gb|EFA14886.1| hypothetical protein SOD_g00710 [Serratia odorifera 4Rx13] Length = 219 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + +KG TR G I + N FD SS+ P L + VL Sbjct: 82 VQEAKLRDKMKGTGVSVTRQGDNIVLN-MPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 140 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD+ N LS RA L+ GV+ +RI + SG Sbjct: 141 PKTAVNVIGYTDS---SGSRALNMTLSQQRADGVGSALITQGVAANRI-RTSGAGPDNPI 196 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 197 ASNSTAEGKAQNRRVEITLSPLQ 219 >gi|70729258|ref|YP_258995.1| outer membrane protein OprF [Pseudomonas fluorescens Pf-5] gi|68343557|gb|AAY91163.1| outer membrane protein OprF [Pseudomonas fluorescens Pf-5] gi|154759407|gb|ABS85198.1| major outer membrane porin [Pseudomonas fluorescens] Length = 325 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 219 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 275 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 QVL+ + GV +R+ + G+ R A++ + NRR++ VE Sbjct: 276 KQVLVNQYGVGANRVQSV-GYGESRPVADNATEAGRAVNRRVEASVE 321 >gi|238798361|ref|ZP_04641844.1| Inner membrane lipoprotein yiaD [Yersinia mollaretii ATCC 43969] gi|238717819|gb|EEQ09652.1| Inner membrane lipoprotein yiaD [Yersinia mollaretii ATCC 43969] Length = 219 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD SS P L + VL Sbjct: 83 VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G TD+ N LS RA S L+ GV+ +RI + SG Sbjct: 142 DKTAVNVTGFTDS---SGARAHNMTLSQQRADSVGSALIVQGVAANRI-RTSGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|293608672|ref|ZP_06690975.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829245|gb|EFF87607.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 473 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS + +L + +L + +++ GHTD++ A N LS RA + Sbjct: 371 FASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDST---GNAAANKALSQRRAQAV 427 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L+ GV ++ G + + NRRI+ V Sbjct: 428 VDYLISKGVDGTKLVA-QGHGSDQPVAENTTEEGRFKNRRIEFSV 471 >gi|237742042|ref|ZP_04572523.1| outer membrane porin F [Fusobacterium sp. 4_1_13] gi|229429690|gb|EEO39902.1| outer membrane porin F [Fusobacterium sp. 4_1_13] Length = 348 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + + GHTD+ + N Sbjct: 237 LITLDSGILFDVDKYDLRPEAEEVLKNLAIVLKEADIKAFEVDGHTDSDA---SDKHNQI 293 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS +RA + L G++ + I G+ R ++D NRR++I++ Sbjct: 294 LSENRANAVKNFLTSQGITAE--ITIKGYGESRPIASNDTPEGKQKNRRVEIVI 345 >gi|197116705|ref|YP_002137132.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] gi|197086065|gb|ACH37336.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] Length = 169 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P + I ++ + + GHTD N +LS DRA + Sbjct: 65 FKTGKAEIDPSCDKTMTAIAAIMTDYPGFHVQVDGHTDNV---GKPEANQKLSQDRADAV 121 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + L+ + + GF + + + NRR+D V Sbjct: 122 VKYLVDKKAVDAKRLSAKGFGDSKPIADNKTKAGQAKNRRVDFTV 166 >gi|197117764|ref|YP_002138191.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] gi|197087124|gb|ACH38395.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] Length = 468 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +I PE + ++G + I GHTD N LS RA + Sbjct: 237 FDIDKAIIRPEYKEEIAQVGNFMKKYPTTTAVIEGHTDNV---GSYNHNQDLSQRRAEAV 293 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L++ G+ R+S G+ R A+D NRRI+ +++ Sbjct: 294 VNYLVEQYGIERSRLSA-KGYGFTRPIADNATDEGKQKNRRIEAIID 339 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + + K+ + + +T I GHTD + N +LS RA + Sbjct: 361 FDAGKADVKSQYRNEIAKVADYMKRYNTTTAVIEGHTDNT---GSPEKNMKLSQQRAQNV 417 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVE 339 L+ + G+ R+S A R+ + P NRRI+ +++ Sbjct: 418 VNYLVDNFGIERSRLSAKGYGATRRISYNNTPEGRQKNRRINAVID 463 >gi|152981732|ref|YP_001352854.1| OmpA family protein [Janthinobacterium sp. Marseille] gi|151281809|gb|ABR90219.1| OmpA family protein [Janthinobacterium sp. Marseille] Length = 229 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 16/151 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++++ + + G + +T+ + + I + F S P Sbjct: 73 KMENQKRAMEQATQGTGVQ------VSQTSDNRLKLEI---PSDISFATGRSDINPSLQP 123 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + L + ++I GHTD++ I LS DRA L GV+ RI Sbjct: 124 ILDRFATGLVDNPTATVTIIGHTDSTGSDAINNP---LSFDRASRTRDYLTGRGVAPQRI 180 Query: 310 SKISGFAHHRLK--IASDPMNSANRRIDILV 338 + G H A + NRR++I V Sbjct: 181 Y-VDGRGSHEPIASNADAAGRARNRRVEIFV 210 >gi|15645435|ref|NP_207609.1| flagellar motor protein MotB [Helicobacter pylori 26695] gi|3024164|sp|P56427|MOTB_HELPY RecName: Full=Motility protein B; AltName: Full=Chemotaxis protein MotB gi|2313948|gb|AAD07865.1| flagellar motor rotation protein (motB) [Helicobacter pylori 26695] Length = 257 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|157889011|dbj|BAF80958.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 19/161 (11%) Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 K K++++ K+I + ++ + E T I F Sbjct: 175 KAPKTPQTTTKQIEEKPQTKQIDKSCPEPRKGALLDHIGCEKT--------IALEGHFGF 226 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296 D++S PE +Q++G+VL + + +I GHTD++ N +LSL+RA + Sbjct: 227 DQTS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVA 281 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L KSGV++++I G+ + K ++D + NRR++ Sbjct: 282 KELEKSGVAKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|167035288|ref|YP_001670519.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861776|gb|ABZ00184.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 230 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ L I L + +S+ GHTD+ N +LS RA+S Sbjct: 126 FEFDSARLTSSDKERLNTIATRLKQEAPSARLSVSGHTDSV---GSDSYNQKLSERRAHS 182 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 L++SGV + G + A+ + NRR +I ++ Sbjct: 183 VTDYLVESGVPRRSFVSVVGAGETQPVADNATAEGRAMNRRTEIKIQR 230 >gi|254254565|ref|ZP_04947882.1| OmpA domain protein [Burkholderia dolosa AUO158] gi|124899210|gb|EAY71053.1| OmpA domain protein [Burkholderia dolosa AUO158] Length = 226 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + ++ +F ++ P L K+ T ++I G+TD+ N Sbjct: 113 VEHVNLAGDALFATGAATLTPAARASLDKLLSARDDRTYSNVTITGYTDSV---GSDASN 169 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L G+ R ++G ++ ++NRR++I ++ Sbjct: 170 VALSKRRAQAVAAYLNAHGLK-TRTLTVTGRGSADPVASNATADGRASNRRVEISLQR 226 >gi|256840118|ref|ZP_05545627.1| outer membrane protein [Parabacteroides sp. D13] gi|256739048|gb|EEU52373.1| outer membrane protein [Parabacteroides sp. D13] Length = 226 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ +TL V + ++ + +F +SS + Sbjct: 72 KKMDKQKKELEATLPEDTKIESVNN------GEALKVTF---DSGILFATNSSTLSDASK 122 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+ L + + I I G TD + N LS RA S Y LM GVS DR Sbjct: 123 SALRNFATSLKANPDTDIRIIGFTDNT---GKVDYNQTLSEKRAKSVYDYLMMQGVSTDR 179 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G H ++D S NRR++I++ Q Sbjct: 180 MV-YEGKGIHDPVASNDTPEGRSLNRRVEIVILANQ 214 >gi|298368928|ref|ZP_06980246.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282931|gb|EFI24418.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 216 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + E +++ ++ S + P++ A +S+ + Sbjct: 15 QKPDEPAAQQQQASPVQASTTETPQTQPEPVAPSAPAHATTPAPASAPATAQNSSAAAQG 74 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266 + + T TG I I + +FD + PE LQK +++ +I Sbjct: 75 SSLTAQSSSLSGTETGFNIQIN-LSSDVLFDFDKAELKPEADRELQKAADIIRQKGKGLI 133 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-- 324 I G+TD+ + N RLSL RA + G+ ++ + G + Sbjct: 134 LISGYTDS---KGTDAYNKRLSLVRAQAVKNWFEAQGLHQN--YQTEGLGAANPVAPNTN 188 Query: 325 -----DPM-NSANRRIDILV 338 +P + NRR++I+V Sbjct: 189 DDGSDNPEGRAKNRRVEIIV 208 >gi|307547058|ref|YP_003899537.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581] gi|307219082|emb|CBV44352.1| OmpA/MotB domain protein [Halomonas elongata DSM 2581] Length = 223 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++G R G I + + F SS P L + VL T+ I+I G Sbjct: 93 MQGTGIGVERQGNDIVLN-MPSEVTFGFDSSDLTPAATSALNDVSNVLTQYTDTRINIAG 151 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 HTD++ A N RLS RA + Q L +SGVS R++ G+ ++ ++D Sbjct: 152 HTDST---GDAGYNQRLSERRAQAVGQYLSQSGVSAGRLNM-QGYGENQPVASNDTEAGR 207 Query: 329 SANRRIDILVED 340 + NRR+++ + Sbjct: 208 AQNRRVEMTLTP 219 >gi|290955106|ref|YP_003486288.1| lipoprotein [Streptomyces scabiei 87.22] gi|260644632|emb|CBG67717.1| putative lipoprotein [Streptomyces scabiei 87.22] Length = 393 Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 12/116 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + P L+ + + L + V++I GHT + LS RA + Sbjct: 277 FTADDARLAPGADRYLRPVADSLERCGTDVVVTITGHTARV---GAGASGFALSGRRARA 333 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-------NSANRRIDILVEDRQG 343 + L++ GVS I + G R ++ + P NRR++I V ++G Sbjct: 334 VSERLVRLGVSPALIGSVEGVGSTRPRVDNMPGGVFAERLARQNRRVEITVTPKEG 389 >gi|148259686|ref|YP_001233813.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146401367|gb|ABQ29894.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 227 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%) Query: 212 VKGVLFETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHS 262 + + T G + + + + F S+ P +L ++G+ L + Sbjct: 85 AQKQALQRTAQGTGVQVSQTADNRLKLNVPADAGFATGSATLNPRLYPILDQLGQGLQQN 144 Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 E + I G+TD++ I LS +RA S L+ G+S RI G Sbjct: 145 PTETVQIIGYTDSTGSNAINYP---LSDNRAASVKTYLVSRGISGQRI-ATRGMGPQDPV 200 Query: 322 --IASDPMNSANRRIDILV 338 A+ +ANRR+DI V Sbjct: 201 ASNATAAGRAANRRVDIYV 219 >gi|110640101|ref|YP_680311.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110282782|gb|ABG60968.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 670 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 I +L +G + + F +S+ + + L ++ EVL + I + Sbjct: 546 EIKVDLLLVPIESGQKVEL----KNVFFHQSTPNLIETSYPELDRMVEVLKTNPTVRIEL 601 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD A N LS R + L+ G+ RI+ F + ++ Sbjct: 602 DGHTDNQ---GDAALNLALSEKRVETVKAYLVSKGIDNKRIT-TRAFGGTKPIAPNNTEE 657 Query: 327 MNSANRRIDILVE 339 NRR++I++ Sbjct: 658 NRKKNRRVEIIIL 670 >gi|22127533|ref|NP_670956.1| hypothetical protein y3659 [Yersinia pestis KIM 10] gi|45443397|ref|NP_994936.1| hypothetical protein YP_3665 [Yersinia pestis biovar Microtus str. 91001] gi|21960635|gb|AAM87207.1|AE013969_3 hypothetical [Yersinia pestis KIM 10] gi|45438266|gb|AAS63813.1| conserved hypothetical protein [Yersinia pestis biovar Microtus str. 91001] Length = 545 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 199 ISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDKSSSIPLPET--IVVLQKI 255 I TL +++ + +G + G + I F + E ++++ Sbjct: 371 IMETLPNPLSNILNEGWLEVRKDPRG-WLLIFTSDGA--FRTGEATLSEEFINKKNIERL 427 Query: 256 GEVLAHSTEVISIRGHTDASPFRN-IARDNWRLSLDRAYSAYQVL-MKSGVSE--DRISK 311 G LA I + GHTD PFR+ +N +LS RA L + ++E R Sbjct: 428 GLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREIS 487 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDIL 337 G A++ NRR+DIL Sbjct: 488 AIGRGESDPLADNATEEGRKRNRRVDIL 515 >gi|163732607|ref|ZP_02140052.1| OmpA family domain protein [Roseobacter litoralis Och 149] gi|161393967|gb|EDQ18291.1| OmpA family domain protein [Roseobacter litoralis Och 149] Length = 319 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S P L+++ E L+ + I++ GHTD + N LS RA S Sbjct: 214 FAIGTSDLGPGPFPALKELSEFLSTTEGIRIALVGHTDTT---GALATNISLSRARAQSV 270 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 L++ GV+ D++ G + + D NRR+++++ + Q Sbjct: 271 RARLIEVYGVAPDKVDA-EGMGYLAPIATNLTDEGRRQNRRVEVVLLNTQ 319 >gi|317012627|gb|ADU83235.1| flagellar motor protein MotB [Helicobacter pylori Lithuania75] Length = 257 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|237716264|ref|ZP_04546745.1| outer membrane protein [Bacteroides sp. D1] gi|294807688|ref|ZP_06766481.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b] gi|229443911|gb|EEO49702.1| outer membrane protein [Bacteroides sp. D1] gi|294445124|gb|EFG13798.1| OmpA family protein [Bacteroides xylanisolvens SD CC 1b] Length = 238 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 66 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 175 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 221 >gi|317182128|dbj|BAJ59912.1| flagellar motor protein MotB [Helicobacter pylori F57] Length = 255 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLIKTRFKSHYELAANRAYRVMKVLMQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|296387971|ref|ZP_06877446.1| putative outer membrane protein precursor [Pseudomonas aeruginosa PAb1] gi|313108871|ref|ZP_07794854.1| putative outer membrane protein precursor, OmpA family [Pseudomonas aeruginosa 39016] gi|310881356|gb|EFQ39950.1| putative outer membrane protein precursor, OmpA family [Pseudomonas aeruginosa 39016] Length = 321 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I ++L I + GH+D N LS RA + Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + L +GV E +I+ + + +A++ + NRR+ + + R+ Sbjct: 235 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 283 >gi|150007860|ref|YP_001302603.1| OmpA family outer membrane protein [Parabacteroides distasonis ATCC 8503] gi|262381639|ref|ZP_06074777.1| outer membrane protein [Bacteroides sp. 2_1_33B] gi|298376779|ref|ZP_06986734.1| lipoprotein PG3 [Bacteroides sp. 3_1_19] gi|301310112|ref|ZP_07216051.1| lipoprotein PG3 [Bacteroides sp. 20_3] gi|149936284|gb|ABR42981.1| outer membrane protein, OmpA family [Parabacteroides distasonis ATCC 8503] gi|262296816|gb|EEY84746.1| outer membrane protein [Bacteroides sp. 2_1_33B] gi|298266657|gb|EFI08315.1| lipoprotein PG3 [Bacteroides sp. 3_1_19] gi|300831686|gb|EFK62317.1| lipoprotein PG3 [Bacteroides sp. 20_3] Length = 227 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ +TL V + ++ + +F +SS + Sbjct: 73 KKMDKQKKELEATLPEDTKIESVNN------GEALKVTF---DSGILFATNSSTLSDASK 123 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+ L + + I I G TD + N LS RA S Y LM GVS DR Sbjct: 124 SALRNFATSLKANPDTDIRIIGFTDNT---GKVDYNQTLSEKRAKSVYDYLMMQGVSTDR 180 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G H ++D S NRR++I++ Q Sbjct: 181 MV-YEGKGIHDPVASNDTPEGRSLNRRVEIVILANQ 215 >gi|74316262|ref|YP_314002.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] gi|74055757|gb|AAZ96197.1| probable outer membrane protein [Thiobacillus denitrificans ATCC 25259] Length = 331 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 101/241 (41%), Gaps = 19/241 (7%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN-SLTRDSEKGKDLCKST 161 E + + ++ + + ++ RLE ++ ++Q + + +E+ + L Sbjct: 91 QETAKRKAAEISVTEASAERDRVRLEARTAEVAAARQQATQAELTAQQQAERDRALIAER 150 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGLVADNIVKGVLFETT 220 + E +++ ++++ A++ + +Q +I+ L A N K T Sbjct: 151 EAEVEAARQQAATAEEAARQRADALEAARLEIQRAQTRIAEQEEQLQALNAKK------T 204 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRN 279 G+++++ D +F + + P + +QK+ + L T + I GHTD++ Sbjct: 205 DRGLVVTLGD----VLFGVNKADLTPGGMRNVQKLADFLKQYETRKLLIEGHTDST---G 257 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 N LS RA + L+ GV +RI G+ +++ NRR++++ Sbjct: 258 GDALNQALSERRAEAVKTALIGMGVDGERI-ATRGYGKAFPVASNNTAAGRQLNRRVEVV 316 Query: 338 V 338 + Sbjct: 317 L 317 >gi|19704459|ref|NP_604021.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714725|gb|AAL95320.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 315 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 12/246 (4%) Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 NK+ + T+ Q ++ N+ + + + ++ Sbjct: 76 NKVTGVTLQVDTQGEGQYLDEKNKISFQIGADGTGVYKDENNDTTITIGENNSTYTKGNI 135 Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + + D + N +E L + + K + ++ K +V V Sbjct: 136 TIENNGDGSGTYNDKEKELLIENDGKGKAIITLKGKTIEVEAKPLEKPEKFPKLKMVPPV 195 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDA 274 +LI++ + +FD PE VL+ + VL + I GHTD+ Sbjct: 196 -PSIEANSLLITL---DSGILFDVDKYDVRPEAEEVLKNLVIVLKEADIKAFEIDGHTDS 251 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANR 332 N LS +RA + L G+ + I G+ R ++D NR Sbjct: 252 DA---SDEHNQVLSENRANAVKNFLTSQGIMAE--ITIKGYGESRPIASNDTPEGKQKNR 306 Query: 333 RIDILV 338 R++I++ Sbjct: 307 RVEIVI 312 >gi|15598722|ref|NP_252216.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|218890247|ref|YP_002439111.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254242186|ref|ZP_04935508.1| hypothetical protein PA2G_02920 [Pseudomonas aeruginosa 2192] gi|9949675|gb|AAG06914.1|AE004773_3 probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|126195564|gb|EAZ59627.1| hypothetical protein PA2G_02920 [Pseudomonas aeruginosa 2192] gi|218770470|emb|CAW26235.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] Length = 321 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I ++L I + GH+D N LS RA + Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + L +GV E +I+ + + +A++ + NRR+ + + R+ Sbjct: 235 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 283 >gi|262041576|ref|ZP_06014773.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041137|gb|EEW42211.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 488 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + + + + +FD + T V++ + + A +I + G+TD + Sbjct: 341 DALPVQSVRLDSMALFDVGQARLKDGSTKVLINALVNIRARPGWLIVVTGYTDTT---GN 397 Query: 281 ARDNWRLSLDRAYSAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + N +LSL RA + +L S + + G +D +ANRR++I Sbjct: 398 KKANQQLSLRRAEAVRDWMLQTSDIPAT-CFAVQGLGESHPAATNDTPEGRAANRRVEIS 456 Query: 338 VEDR 341 + R Sbjct: 457 LVPR 460 >gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gi|124483422|emb|CAM32584.1| signal peptide protein [Herbaspirillum seropedicae] gi|300075775|gb|ADJ65174.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD + P L ++ L + I GHTD+ ++A N +LS+ RA S Sbjct: 97 FFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDS--IGSVAY-NQKLSVRRAES 153 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342 L+ GV +R+ G + + + NRR++I +V R+ Sbjct: 154 VKAYLVSKGVEANRVY-TEGKGKSQPVADNKTAAGRAKNRRVEIEVVGTRK 203 >gi|124003886|ref|ZP_01688734.1| OmpA/MotB, putative [Microscilla marina ATCC 23134] gi|123990941|gb|EAY30408.1| OmpA/MotB, putative [Microscilla marina ATCC 23134] Length = 389 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 F+ + + LP + L K+ +L + + I GHTD N +LS R Sbjct: 284 KNIFFEFAKARLLPASFPELDKLVNLLTTHPQIKVRIMGHTDNV---GTDTRNLQLSNRR 340 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A S L K G+ +R++ GF R ++ NRR++ +V Sbjct: 341 AKSVVTYLKKQGIRANRLT-FKGFGESRPIDSNVTKEGRQKNRRVEFVVL 389 >gi|315586519|gb|ADU40900.1| flagellar motor protein MotB [Helicobacter pylori 35A] Length = 255 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDSINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ L++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYLERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|284035694|ref|YP_003385624.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283814987|gb|ADB36825.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 236 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 19/152 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+ A++I + E GI +S+ + +FD S PET Sbjct: 84 RRMDKQAEEIKRQM---------PNAQVERVGEGIKVSL---GSDILFDVDSYALKPETK 131 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L + + L + + I GH DA+ N LS RA + L GV R Sbjct: 132 QQLIEFAKSLNKYEDTDVRIEGHADAT---GSDSHNLELSKQRAKAVGSFLESQGVKTSR 188 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + +I G+ + +++ NRR+D+ V Sbjct: 189 VDEI-GYGEAQPVADNSTEAGRRKNRRVDVAV 219 >gi|116051525|ref|YP_789639.1| OmpA family membrane protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115586746|gb|ABJ12761.1| putative outer membrane protein precursor, OmpA family [Pseudomonas aeruginosa UCBPP-PA14] Length = 321 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I ++L I + GH+D N LS RA + Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + L +GV E +I+ + + +A++ + NRR+ + + R+ Sbjct: 235 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 283 >gi|71907808|ref|YP_285395.1| OmpA/MotB [Dechloromonas aromatica RCB] gi|71847429|gb|AAZ46925.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 261 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ P V+L ++ + T + + GHTD+ + N LSL RA S Sbjct: 158 FEVGAATLTPAGRVILDEMYAAIKQIGTPKVQVIGHTDS---SGSRQANIALSLSRANSV 214 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 L++ G+ D ++ + G + ++D + NRRI+ Sbjct: 215 RSYLIEKGLPADGLTAV-GSGPDQPVGSNDSSEGRAKNRRIE 255 >gi|110638331|ref|YP_678540.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281012|gb|ABG59198.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 424 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 13/168 (7%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 ++ + P E + LQ S + + K + G I + Sbjct: 261 QDEPVKPAVIENTTVVSTTTILQ--PADTSKQIKTTKTEIKPKDESVFDVKKGDKIVL-- 316 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 +F +S LPE+ L ++ + ++ I + GHTD R++ N +LS Sbjct: 317 --KHVLFVQSKDDFLPESYAELDRLVATMNQHPQITIEVSGHTDNQGNRDL---NLKLSE 371 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 +RA L+ G+ RI+ + G+ + A+D NRR++ Sbjct: 372 ERAIKVKDYLVSRGIEAKRIN-VKGYGPDKPISANDTEEHRRLNRRVE 418 >gi|126640934|ref|YP_001083918.1| putative outer membrane protein [Acinetobacter baumannii ATCC 17978] gi|169796935|ref|YP_001714728.1| putative outer membrane protein [Acinetobacter baumannii AYE] gi|184157155|ref|YP_001845494.1| outer membrane protein, related peptidoglycan-associated (lipo)protein [Acinetobacter baumannii ACICU] gi|213156662|ref|YP_002318323.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057] gi|215484397|ref|YP_002326628.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB307-0294] gi|239503181|ref|ZP_04662491.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB900] gi|260555775|ref|ZP_05827995.1| type VI secretion system OmpA/MotB [Acinetobacter baumannii ATCC 19606] gi|301347224|ref|ZP_07227965.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB056] gi|301512729|ref|ZP_07237966.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB058] gi|301597873|ref|ZP_07242881.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB059] gi|332853740|ref|ZP_08434952.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332871140|ref|ZP_08439738.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|332874156|ref|ZP_08442080.1| OmpA family protein [Acinetobacter baumannii 6014059] gi|126386818|gb|ABO11316.1| putative outer membrane protein [Acinetobacter baumannii ATCC 17978] gi|169149862|emb|CAM87753.1| putative outer membrane protein [Acinetobacter baumannii AYE] gi|183208749|gb|ACC56147.1| Outer membrane protein, related peptidoglycan-associated (lipo)protein [Acinetobacter baumannii ACICU] gi|213055822|gb|ACJ40724.1| OmpA/MotB domain protein [Acinetobacter baumannii AB0057] gi|213988304|gb|ACJ58603.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter baumannii AB307-0294] gi|260410686|gb|EEX03984.1| type VI secretion system OmpA/MotB [Acinetobacter baumannii ATCC 19606] gi|322507052|gb|ADX02506.1| Putative outer membrane protein [Acinetobacter baumannii 1656-2] gi|323516919|gb|ADX91300.1| Outer membrane protein, related peptidoglycan-associated (lipo)protein [Acinetobacter baumannii TCDC-AB0715] gi|332728426|gb|EGJ59801.1| OmpA family protein [Acinetobacter baumannii 6013150] gi|332731726|gb|EGJ63007.1| OmpA family protein [Acinetobacter baumannii 6013113] gi|332737631|gb|EGJ68534.1| OmpA family protein [Acinetobacter baumannii 6014059] Length = 217 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L KK+ ++G GV G + I+ + FD + S P Sbjct: 77 LDQKEKKLREQMAGT-------GVEVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + LA + I + G+TD + N LS RA S L GV RI Sbjct: 128 LDKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGVPSSRID 184 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ + + NRR++I + +Q Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217 >gi|148652893|ref|YP_001279986.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571977|gb|ABQ94036.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1] Length = 314 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ S+ P L ++ + + I+ I GHTD R N LS RA + Sbjct: 209 LFETDKSVVRPSYYRKLSEVADFMNKYPSTIATIEGHTDD---RASDSYNLALSQRRADA 265 Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 V + + + +R+ I G+ + + +D NRR+ ++E+ Sbjct: 266 VRNVFIHEFDIDSNRLKAI-GYGESKPRATNDTAEGRQLNRRVMAVIEE 313 >gi|325279362|ref|YP_004251904.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311171|gb|ADY31724.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712] Length = 235 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+ K++ + + V+ V I ++ N +F + S P + Sbjct: 80 RRMDKQKKELEA-----IEGAKVESVQDVNNLQAIKVTF---DNGILFATNKSELSPASR 131 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K L +S + ++I GHTD + R + N R+S +RA + L+ G+S R Sbjct: 132 EALTKFATSLKNSPDTDVTIYGHTDNTGTRAV---NERISKERADAVANFLVGQGISRSR 188 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++ G A + + + NRR++I + Sbjct: 189 LT-TEGLAFDQPVADNSTAEGRAQNRRVEIYI 219 >gi|170697917|ref|ZP_02889001.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170137192|gb|EDT05436.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 587 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 8/117 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 ++ + +FD + T + E++ + + G+ D N + Sbjct: 462 VVTLDSMSLFDSGKARLRTGTTRAMVDALELIKAHPGKRVLVAGYADDQ---GRPDRNLK 518 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS+DRA + L+++ G+ R I G+ R + + NRR++I + Sbjct: 519 LSIDRASAVRDWLIEASGIPPTRF-AIQGYGDTRPVADNATPEGRAKNRRVEITLVP 574 >gi|319955316|ref|YP_004166583.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319423976|gb|ADV51085.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 238 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 19/153 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPET 248 R+ A++I + G E TR G I+++ + + FD + S+ + Sbjct: 86 NRMDKQAERIEEEIPGA-----------EVTRVGEGINVVFNEDAGVYFDTNKSVVKGTS 134 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L ++ +L + I + GHTD+ A N LS RA S L G+S + Sbjct: 135 ATILDRLVGILKEYPDSNILVEGHTDS---AGPADYNMNLSKQRAESVTSYLNTHGISSN 191 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R++ + + K + + NRR+++++ Sbjct: 192 RLT-TKWYGETQPKSDNSTTEGKAKNRRVEMVI 223 >gi|313674153|ref|YP_004052149.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312940851|gb|ADR20041.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 485 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 18/291 (6%) Query: 52 WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 W + I F ++ + ++ + P ++N ++ E + + + Sbjct: 208 WDEWTEPKNLGNVINTKFEETFVSIDPSFDYLYYDSYPSGAQNRNIWRATLSEELKEEII 267 Query: 112 DLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 + + ++ + I + +QSE T ++E + + E + E Sbjct: 268 KARDQNKKKEIIEEPQSEEIIAKESDKQSEKIP---TENAESVANAKQPLQDEPTTAMES 324 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + +E ++++ Q +I + D +K L + G I Sbjct: 325 QPVAVKIDQEMDYVKEQERNNQGFLAQIGEKIGLGGKDEEIK--LIDAGAKGQKI----- 377 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 F S + +L KI E L + + I + GHTDA N LS Sbjct: 378 NRNVYFKFDSDKLQGKFNSLLDKISEELEKNPQIKIMLEGHTDAI---GGEDINIDLSCS 434 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDILV 338 RA L+ G+++ RI IS R +D NRR++ + Sbjct: 435 RANKVKDALIDRGINQYRIE-ISCEGKERPIATNDDEFEGRELNRRVEFYL 484 >gi|260494612|ref|ZP_05814742.1| OmpA family membrane protein [Fusobacterium sp. 3_1_33] gi|260197774|gb|EEW95291.1| OmpA family membrane protein [Fusobacterium sp. 3_1_33] Length = 396 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + I GHTD+ + N Sbjct: 285 LITLDSGILFDVDKYDVRPEAEEVLKNLAIVLKEADIKAFEIDGHTDSDA---GDKHNQI 341 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS +RA + L G++ + I G+ R ++D NRR++I++ Sbjct: 342 LSENRANAVKNFLTSQGITAE--ITIKGYGKTRPIASNDTPEGKQKNRRVEIVI 393 >gi|152985175|ref|YP_001347005.1| outer membrane protein [Pseudomonas aeruginosa PA7] gi|150960333|gb|ABR82358.1| probable outer membrane protein [Pseudomonas aeruginosa PA7] Length = 321 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I ++L I + GH+D N LS RA + Sbjct: 178 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + L +GV E +I+ + + +A++ + NRR+ + + Sbjct: 235 VQEYLKGNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL 279 >gi|308188742|ref|YP_003932873.1| OOP family outer membrane lipoprotein yiaD precursor [Pantoea vagans C9-1] gi|308059252|gb|ADO11424.1| Putative OOP family outer membrane lipoprotein yiaD precursor [Pantoea vagans C9-1] Length = 220 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD SSS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRNGDNIVLN-MPNNVTFDSSSSNLKPAGANTLTGVSMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R + N RLS RA S L+ GV+ DR+ + G Sbjct: 142 PKTAVNVVGYTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRL-RTQGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 + + NRR++I + Sbjct: 198 ATNSTEAGKAQNRRVEITL 216 >gi|126740854|ref|ZP_01756539.1| OmpA domain protein [Roseobacter sp. SK209-2-6] gi|126718150|gb|EBA14867.1| OmpA domain protein [Roseobacter sp. SK209-2-6] Length = 308 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 21/211 (9%) Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + SL + + + + P S + + ++ D Sbjct: 116 PGQAEQAQEVVSLLVSHSGYATFLQIIETGPVMEDQPPETEPAASSPNLSEVSDEEAKPD 175 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 S LS V+ E G++ F S + L++ Sbjct: 176 SGDHQSEALSLSSQLLAEGHVILE----GLV-----------FKSGSVRLGQRAVQSLEE 220 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKI 312 + + L E + I GHTD+ N LS RA + L+++ G+ R+ Sbjct: 221 LAQFLKDHPEARVLIVGHTDSV---GSLASNRSLSERRAEAVRGALIENSGIDNARVQAT 277 Query: 313 -SGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 G+A S NRR++ ++ + Sbjct: 278 GVGYAAPIASNLSPAGREKNRRVEAVLLSSK 308 >gi|317180579|dbj|BAJ58365.1| flagellar motor protein MotB [Helicobacter pylori F32] Length = 257 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|88857596|ref|ZP_01132239.1| probable outer membrane protein [Pseudoalteromonas tunicata D2] gi|88820793|gb|EAR30605.1| probable outer membrane protein [Pseudoalteromonas tunicata D2] Length = 293 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 32/254 (12%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC-KNSLTRDSEKGKDLCKSTDLEKSI 167 NS++ N R + + + + L +E+ D+ ++ + + Sbjct: 43 NSLEGNQNLANMAPMAVRDARTAVFNAEQPSKDPELADHLVFIAERKVDIAQAESQRRYL 102 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI---------------- 211 ++ + F+ ++ A ++ L L+ + + N+ Sbjct: 103 EQQRSEFIAERDNMQLEARIKESELAKLSATQAKDEAAQAQQNLYYAKQETAGAKQKVKD 162 Query: 212 ----VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVI 266 + + + G +I++ D +FD + S P I L K+ L + I Sbjct: 163 IQHQLDQLDARNSARGSVITLGD----VLFDFNKSDIKPAAISHLAKLATFLNTNIDRNI 218 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 +I GHTD + N LS RA S L+ GV+ RI + SG I + Sbjct: 219 TIEGHTDNI---GSKKFNLLLSQRRADSIKDYLIGQGVARGRI-QTSGKGISLPVIDNTT 274 Query: 327 MNSA--NRRIDILV 338 + NRR+++++ Sbjct: 275 ADHREQNRRVEVII 288 >gi|299145363|ref|ZP_07038431.1| lipoprotein PG3 [Bacteroides sp. 3_1_23] gi|298515854|gb|EFI39735.1| lipoprotein PG3 [Bacteroides sp. 3_1_23] Length = 238 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 66 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 175 AQSVSSYLLSCGVSTNQIKSVQGMGESDPVASNDTAAGREQNRRVEV 221 >gi|145219523|ref|YP_001130232.1| OmpA/MotB domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205687|gb|ABP36730.1| OmpA/MotB domain protein [Chlorobium phaeovibrioides DSM 265] Length = 229 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 10/138 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 D+ V+G E I + + D +F SS + ++K+ +L + Sbjct: 82 QAEEIDSQVEGARVERVGESIRV-VFDS--GILFSTGSSTLTSTSRYNIEKLARILNRYS 138 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I GHTDA N LS RA S +L GVS R+S + G+ R Sbjct: 139 NTNLVIEGHTDAI---GAESLNQTLSERRAESVANLLAGYGVSRYRLSPV-GYGETRPIA 194 Query: 323 ASDPM--NSANRRIDILV 338 +++ NRR+++L+ Sbjct: 195 SNETEYGRRLNRRVEVLI 212 >gi|310780073|ref|YP_003968405.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926] gi|309749396|gb|ADO84057.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926] Length = 216 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS VL + +L I + GHTD + N RLS +RA S Sbjct: 112 FRTGSSDINSGFYDVLDSVATILVEYKDTTIFVSGHTDNT---GSLATNQRLSQERANSV 168 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 + L GV RIS GF + ++ + NRR++I + Sbjct: 169 GRYLSSRGVLSSRISS-QGFDYQFPIASNSTASGREQNRRVEIEI 212 >gi|116326910|ref|YP_796630.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332434|ref|YP_802152.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119654|gb|ABJ77697.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116126123|gb|ABJ77394.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 545 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 13/126 (10%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 F+ G IS+ ++ F S L ++ +L+ + L + I I GHTD Sbjct: 426 FQELEKGKSISL----DSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTD-- 479 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIA-SDP-MNSANR 332 +DN LS +RA + L++ G+ RI ++ G I DP + NR Sbjct: 480 -LNGDYQDNIILSHNRANAVKDYLVRKGIDSGRI--VTDGKGSSEPIIPRKDPKTDYKNR 536 Query: 333 RIDILV 338 R + + Sbjct: 537 RTEFQI 542 >gi|148652191|ref|YP_001279284.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571275|gb|ABQ93334.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1] Length = 403 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Query: 215 VLFETTRTG--ILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 V G + + I D+ FD S+ + + K+ E + SI Sbjct: 257 VNTVVDENGCPVQVQIDDELKMELRVFFDNDKSVIKEQYKPEIAKVAEKMREYPNSSASI 316 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM 327 GH AS AR N RLS RA + +L GV+ +R+S + G+ + R +D Sbjct: 317 EGH--ASKTGPSARYNQRLSEARAIAVKTMLTNEFGVAPNRLSTV-GYGYDRPIAPNDTE 373 Query: 328 --NSANRRI 334 + NRR+ Sbjct: 374 EGRAMNRRV 382 >gi|74316145|ref|YP_313885.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] gi|74055640|gb|AAZ96080.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] Length = 415 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + E ++ G ++ + + N F S+ P+ + VL + VL T+ + + GH Sbjct: 293 QAAQLERSQAGDVVVLPEGVN---FAFDSAELRPDAVTVLDEAVTVLNRRTDIKVDVVGH 349 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNS 329 T N LS RA S Y + +GV+ DR++ G+ R ++D Sbjct: 350 TCNI---GPEAYNQGLSERRAKSVYDYFIDNGVAADRLT-TQGYGETRPAYSNDTREGRE 405 Query: 330 ANRRIDILVE 339 NRR+++ V+ Sbjct: 406 KNRRVELHVK 415 >gi|85709715|ref|ZP_01040780.1| outer membrane protein [Erythrobacter sp. NAP1] gi|85688425|gb|EAQ28429.1| outer membrane protein [Erythrobacter sp. NAP1] Length = 231 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 17/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K+ D +++ L G GV E I ++ + F S+ P Sbjct: 76 KQFDDQIRELDEELEGT-------GVDVEEIGDQDAI-LVRLPDGVTFASGSATINPGFY 127 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L + L + + G TD + N RLS RA + L GV+ R Sbjct: 128 DSLNSVANSLIQYPNSLVDVYGFTDTT---GSDSLNQRLSEQRAQAVADYLASRGVARSR 184 Query: 309 ISKISGFAHH----RLKIASDPMNSANRRIDILVED 340 + G+ R+K A NRR++I + Sbjct: 185 L-ATRGYGESYDYLRIKTADGVAEPLNRRVEIKIIP 219 >gi|332519368|ref|ZP_08395835.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045216|gb|EGI81409.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 370 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +F+ +I + +I L K+ L + I I GHTD +A+ N LSL R Sbjct: 262 KNILFEFDKAILVNTSIEELDKLNLHLKENKNLNIEIYGHTDNI---GLAKRNQELSLQR 318 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 A S + L+ G+ ++RI + GF + + + + + NRR++ + D+ Sbjct: 319 AKSVSEYLISKGLKKERI-QWFGFGSSKPLVKNSSEDNRAKNRRVEFKLIDK 369 >gi|126736820|ref|ZP_01752555.1| OmpA domain protein [Roseobacter sp. SK209-2-6] gi|126721405|gb|EBA18108.1| OmpA domain protein [Roseobacter sp. SK209-2-6] Length = 205 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 17/157 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L +++ +L+ + T +++S N F S+ P Sbjct: 63 NQLDAQERELRQSLAN-------DSISIVNTGDRLILSF---PNDLTFATDSAAISPVVQ 112 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+ + L + + GHTD+ A N LS RA + + GV R Sbjct: 113 ADLRSVAGSLVRYPNSTVQVIGHTDSD---GDASYNQGLSERRANAVADQIQAGGVPYHR 169 Query: 309 ISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 + +I G + ++ + NRR+++++ + G Sbjct: 170 L-RIIGLGEEQPVASNLTPEGKARNRRVEVVIIPQAG 205 >gi|163786823|ref|ZP_02181271.1| peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] gi|159878683|gb|EDP72739.1| peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] Length = 367 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + V +K + + I ++ + +FD S L + L ++ + Sbjct: 226 IDNVSIESVEKKEMKPIKEKIEEPEIKVNEVYTFKNVLFDFDKSELLDVSKGELNQLYKH 285 Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + I GHTD + N LS RA + L+ G+ RI + GF Sbjct: 286 LKENKDLKVKIFGHTDNV---GLEARNKELSKQRAKAVVDYLISQGLDVSRI-QFIGFGS 341 Query: 318 HRLKIASDPMNSA--NRRIDILVED 340 + +D NRR++ + D Sbjct: 342 SKPISDNDTDEGRQLNRRVEFKLTD 366 >gi|312963035|ref|ZP_07777521.1| OmpA/MotB [Pseudomonas fluorescens WH6] gi|311282804|gb|EFQ61399.1| OmpA/MotB [Pseudomonas fluorescens WH6] Length = 163 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K FE T G +F P + ++Q+IG+ L E + + Sbjct: 37 VLKQQGFELTDEGWA---FGLSGKVLFGSDVETLNPPSTEIVQRIGKALLGVGIERVRVD 93 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA N +LSL RA S VL G+ E + ++ G ++D Sbjct: 94 GHTDA---SGKEIYNQQLSLRRAKSVATVLTGVGMKEQNV-QLRGLGSGEPVASNDTAAG 149 Query: 330 A--NRRIDILV 338 NRR+ I+V Sbjct: 150 RTENRRVSIVV 160 >gi|293393749|ref|ZP_06638056.1| OmpA family protein [Serratia odorifera DSM 4582] gi|291423576|gb|EFE96798.1| OmpA family protein [Serratia odorifera DSM 4582] Length = 220 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 8/143 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD SS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDTDSSTLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N LS RA L+ GV+ +RI + G Sbjct: 142 PKTAVNVVGYTDST---GARAHNMTLSQQRADGVASALITQGVAANRI-RTQGAGPDNPI 197 Query: 322 IASDPMN--SANRRIDILVEDRQ 342 ++ + NRR++I + Q Sbjct: 198 ASNSTTEGKAQNRRVEITLSPLQ 220 >gi|149909453|ref|ZP_01898108.1| outer membrane protein [Moritella sp. PE36] gi|149807563|gb|EDM67512.1| outer membrane protein [Moritella sp. PE36] Length = 214 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + L + ++L + + I GHTD+ A+ N LS +RA S Sbjct: 111 FQTAGYNLSGDIYSSLNSVAKILNEYPKSSLRIVGHTDSV---GSAQSNLTLSEERAESV 167 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + L K G+ R+ G+ R +++ +ANRR++I + Sbjct: 168 SEYLNKRGIKSGRL-STRGYGERRPIASNETKSGRAANRRVEISI 211 >gi|206895822|ref|YP_002246694.1| OmpA family protein [Coprothermobacter proteolyticus DSM 5265] gi|206738439|gb|ACI17517.1| OmpA family protein [Coprothermobacter proteolyticus DSM 5265] Length = 237 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 F PP+ M+ + +L + + + + + + I Sbjct: 63 PSNPTFSPPMPIPPDFIMQGPMTVAELYSNLGGVEKSIQQQYGSEAIEVIEGVNEVRVRI 122 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIAR-DN 284 +F S+ PET +L + L + + I GH + D+ Sbjct: 123 S---GDLLFMPCSASIRPETSQILSALAPELVKAQKEGYRVYIEGHAAYTLSTCPGYIDD 179 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 + +S DRA + + G+ + +++ + G+ + + + + NRR++I + Sbjct: 180 FHISSDRALNVLERFKSLGLDDSKMALV-GYGDNVPVGDVNTPQGQAKNRRVEITIRR 236 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + + W + Y D +T ++ FF++++ + + + + F + Sbjct: 3 KRKESSGPGAPLWCLSYGDLVTNMLVFFVMLFAFSTLNATKFEQMAYSF----VVALGGG 58 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 G+ D + +T + +G + Q Q Sbjct: 59 MGVLPSNPTFSPPMPIPPDFIMQGPMTVAELYSNLGGVEKSIQQQ 103 >gi|327334842|gb|EGE76553.1| putative outer membrane protein A [Propionibacterium acnes HL097PA1] Length = 368 Score = 76.1 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S +VL I+ ++ G ++D NR Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVASNDSEAGRRLNR 359 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 360 RVTITVKE 367 >gi|317177353|dbj|BAJ55142.1| flagellar motor protein MotB [Helicobacter pylori F16] Length = 255 Score = 76.1 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDSINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLIKTRFKSHYELAANRAYRVMKVLMQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVLVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|92116250|ref|YP_575979.1| OmpA/MotB [Nitrobacter hamburgensis X14] gi|91799144|gb|ABE61519.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 463 Score = 76.1 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + P++I +L ++ E L T I I GHTD+ A N LS RA + Sbjct: 361 FETGRATLDPDSIGLLDRLTETALRCPTATIEIAGHTDSD---GDASFNQTLSERRAQAV 417 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 L+K+G+ DR K G+ + A+D + NRRID V Sbjct: 418 VDYLVKAGMPADRF-KPMGYGSVQPIAANDTDEGKAKNRRIDFTV 461 >gi|114320567|ref|YP_742250.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226961|gb|ABI56760.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 326 Score = 76.1 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 6/105 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +S+ LP++ L+ I E+++ + + + GHTD++ N LS++RA + Sbjct: 221 LFAVNSAEILPDSADALEAIAELMSEQPDLTLLVVGHTDST---GDYDYNLTLSMERAEA 277 Query: 295 AYQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337 + L + G+ DR+ +G ++ + NRR++++ Sbjct: 278 VVRWLQREHGIDGDRLQAAGAGMMAPVTSNRTEAGRAENRRVELV 322 >gi|52421234|ref|YP_087146.1| putative outer membrane protein [Bacteroides fragilis YCH46] gi|52218755|dbj|BAD51347.1| putative outer membrane protein [Bacteroides fragilis YCH46] Length = 212 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 +N +F+ S + +L ++ V+ ++I GHTD N LS + Sbjct: 101 QNDILFNFDSFELSSQAQTMLNQLCVVINEIPNTKVNIIGHTDNV---GDKNYNMVLSKN 157 Query: 291 RAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338 RA S + SGV D I++ G + ++ + NRR++I + Sbjct: 158 RALSVGNYMRSSGVDGDNITEDGKGLSSPIADNKTESGRAKNRRVEIYI 206 >gi|170749438|ref|YP_001755698.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655960|gb|ACB25015.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 269 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLD 290 T F S+ PE + L+ +GE L I GHTDA N RLSL Sbjct: 117 TVFFAYDSARLTPEARIQLEPLGEALRAQPLAGHAFLIAGHTDA---AGGRAYNRRLSLA 173 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 RA + L++ G++ +R+ ++ G+ R K P++ NRR+++ + Sbjct: 174 RARAVKAHLVETYGLAPERL-RVHGWGPARPKDPDAPLSRVNRRVEVSL 221 >gi|123444325|ref|YP_001008290.1| putative outer membrane lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091286|emb|CAL14172.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 219 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD SS P L + VL Sbjct: 83 VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N LS RA S L+ GV+ +RI + SG Sbjct: 142 DKTAVNVTGYTDST---GARAHNMTLSQQRADSVGSALIVQGVAANRI-RTSGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|170739239|ref|YP_001767894.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168193513|gb|ACA15460.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 178 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S L + + L S + GHTDA R N LS RA Sbjct: 76 FDYNSDQLTGAAKQNLDEFAKALRDDRLRSSTFLVEGHTDA---RGGEEFNLGLSGRRAD 132 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + L GV +++ G R +P++ ANRR++ Sbjct: 133 AVVRYLSGRGVLAAQLTA-RGLGKSRPL-TDNPLDPANRRVE 172 >gi|254236451|ref|ZP_04929774.1| hypothetical protein PACG_02437 [Pseudomonas aeruginosa C3719] gi|126168382|gb|EAZ53893.1| hypothetical protein PACG_02437 [Pseudomonas aeruginosa C3719] Length = 322 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I ++L I + GH+D N LS RA + Sbjct: 179 FPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSDN---SGNRLTNRDLSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 + L +GV E +I+ + + +A++ + NRR+ + + R+ Sbjct: 236 VQEYLKSNGVPESQIN-VRFYGERYPLVANNSAANRARNRRVTVHL-SREA 284 >gi|117620195|ref|YP_854667.1| putative outer membrane lipoprotein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561602|gb|ABK38550.1| inner membrane lipoprotein YiaD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 218 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR G + I++ N FD SS+ L + V+ Sbjct: 81 VQEAKLREKLQGTGVSVTRNGDQL-ILNMPNNVTFDSSSAQLKAAGANTLSGVAMVVGEF 139 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ GHTD++ R + N +LS RA + L+ GV+ RI SG + Sbjct: 140 DKTRLNVVGHTDSTGSREL---NMKLSAQRADAVAAQLIGQGVTGSRI-STSGVGPDQPV 195 Query: 322 IASDPMN--SANRRIDILVED 340 + + NRR+ I + Sbjct: 196 ATNSTAEGKAQNRRVTITLTP 216 >gi|172065635|ref|YP_001816347.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171997877|gb|ACB68794.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 231 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + L + E + ++I G+TD++ A N +LS RA S Sbjct: 130 FDTDKSTLKTDARDKLDVLIEAAHGTPFKTVTISGYTDST---GTAEHNQQLSQRRAQSV 186 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 Q L + G+S + + G+ + ++ + NRR+DI +E Sbjct: 187 AQYLREHGLSAQKFD-VRGYGENNPVASNATPAGRAKNRRVDITLE 231 >gi|313681313|ref|YP_004059051.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154173|gb|ADR32851.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994] Length = 367 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 14/118 (11%) Query: 229 IDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNI 280 +D P+ F S+ E + + L S +I GHTD++ + Sbjct: 250 VDADGCPLKATLHLNFATDSTKVDAEGAAKVAEFASFLKESPAYKANIVGHTDST--ASD 307 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 A N +LS RA +L++ GV R++ G ++ + NRRI++ Sbjct: 308 AY-NQKLSEKRAAKVKSMLIEDGVDSSRLTS-EGMGEKMPIASNKTKEGRAENRRIEV 363 >gi|210135015|ref|YP_002301454.1| flagellar motor protein MotB [Helicobacter pylori P12] gi|210132983|gb|ACJ07974.1| flagellar motor rotation protein MotB [Helicobacter pylori P12] Length = 257 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY---QRLENNIFY 133 PP+ + + S + + K + + Q + ++ Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLK 119 Query: 134 LSNSQQSEHCKNSLTRD 150 L +S E+ + Sbjct: 120 LPSSLLFENATSDAINQ 136 >gi|59713511|ref|YP_206286.1| outer membrane lipoprotein [Vibrio fischeri ES114] gi|197337177|ref|YP_002157921.1| inner membrane lipoprotein YiaD [Vibrio fischeri MJ11] gi|59481759|gb|AAW87398.1| predicted outer membrane lipoprotein [Vibrio fischeri ES114] gi|197314429|gb|ACH63878.1| inner membrane lipoprotein YiaD [Vibrio fischeri MJ11] Length = 222 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 14/209 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + +++ G+ S + + + ++ + A Sbjct: 18 QATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKERRKNALIGAAAGGAVGGG 77 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256 G D K + E +G+ + + + + F SS L + Sbjct: 78 VGYYFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQSSSYQLDASIYNTLNGVA 137 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + + I GHTD+ A N LS RA S L+K V+ R++ G+ Sbjct: 138 RILVEYPDTALQIDGHTDS---SGNATKNQTLSEQRADSVRTYLIKQDVAAGRVNA-RGY 193 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDRQ 342 ++ + NRR++I + + Sbjct: 194 GARYPVCDNSTKQGRACNRRVEITILPLK 222 >gi|45655964|ref|YP_000050.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599197|gb|AAS68687.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 687 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 18/274 (6%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 F L T + +P ++ +DL + I KN + + + Sbjct: 416 FATTLQTGKVYKIEISSPGFHPQEDILDLRGN--IGKNRKVYRTYVLLPIQVGEGKTEET 473 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + +L D + ++ N L ++ K+ Sbjct: 474 KIEQPIENQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKK 533 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRN-------TPMFDKSSSI 243 L D ++ +T S ++++I + ++ G + I + + + F+ + + Sbjct: 534 LPDNDFELFATASKYISESI-NIIQKNISKNGTVTIYLKAESDVDPVYNLRVYFEFNKTK 592 Query: 244 PLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 E +L + G +L ++++ I I GHTD + N RLS RA + Y+ L+ Sbjct: 593 ITEENKKLLDPLVGYLLKNASDKIEIGGHTDN--VASKEY-NTRLSAKRARNVYEYLLSK 649 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 G+ E R+ +I + + + ++ + NRR+ Sbjct: 650 GIPEKRM-RIRAYWYSQPDADNETETGRAKNRRV 682 >gi|284039059|ref|YP_003388989.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283818352|gb|ADB40190.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 427 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 85/270 (31%), Gaps = 16/270 (5%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 K+ + K + P R+ E + ++ + + N I Sbjct: 168 PRKDSYSQRKPPVQPRQQPPRTVPRPQPEPPTEQLPPDNTPVPVQPKVLPAPATVAINGI 227 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + ++Q + S + D +S + Y + + K Sbjct: 228 TRDAKTKQPITATVTYRLISGAEASGDEPADSLQSGSLTGKYRIEIDRRGVYAVTASAKG 287 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + + + ++ + G I++ F+ S PE+ Sbjct: 288 YFSQSDTLVTN-----RVDVARDFNLVPIEAGAKITL----KNIYFNVSKYDLKPESYPE 338 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L ++ V+ + I + GHTD N LS +R + L+ G+S RI Sbjct: 339 LDRLVTVMRSNPTMQIRLEGHTDTV---GEFDANVELSRNRVNEVKRYLVDKGISASRIE 395 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILV 338 + G+ R + NRR+++++ Sbjct: 396 TV-GYGPSRPINTNKSLKERPENRRVEMVI 424 >gi|227873496|ref|ZP_03991745.1| OmpA family membrane protein [Oribacterium sinus F0268] gi|227840670|gb|EEJ51051.1| OmpA family membrane protein [Oribacterium sinus F0268] Length = 414 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 93/273 (34%), Gaps = 19/273 (6%) Query: 73 GKNLMTASKGIFDEQNPPERS----SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 + A +GI ++N Q I L ++ T D G T Q + Sbjct: 151 AGQYVDAERGITIQRNTDGSGQYVDEQKGITLQVNSDGTGQYSDDGQGITLQVSEGG--- 207 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N IF + + + + T ++ D+ D S E + + Sbjct: 208 NGIFTDTKKEITMMVSDDSTSYTQGSIDIDVKPDGSGSYYNSETGLSIKNDGQGKAVISL 267 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + + + L ++V V +LI++ + +FD P+ Sbjct: 268 GNDEKTVDARPLEKPTKLPKLSMVPAV-PSLEANSLLITL---DSGVLFDVDKYDIRPDA 323 Query: 249 IVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L + VL I GHTD+ + N LS +RA S L GV+ + Sbjct: 324 EKILNDLATVLKEGGITAFQIDGHTDSM---DTDEHNQVLSENRANSVKSYLASQGVTAE 380 Query: 308 RISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 G+ R +D NRR++I+V Sbjct: 381 --ITTHGYGESRPVATNDTAEGRQQNRRVEIIV 411 >gi|124007678|ref|ZP_01692381.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123986800|gb|EAY26572.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 705 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS ++ V L K+ +++ + + I HTD + N RLS RA S Sbjct: 598 FASGSSKLDEDSYVELAKVVQLMENNKDIKLEISAHTDNV---GVYSRNMRLSRQRAQSV 654 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + L+K+GV + R+ G+ R + + + NRR++ V Sbjct: 655 FNYLIKTGVDKKRLVS-KGYGSARPLVPNTTKKNKAKNRRVEFKV 698 >gi|238793173|ref|ZP_04636801.1| Inner membrane lipoprotein yiaD [Yersinia intermedia ATCC 29909] gi|238727546|gb|EEQ19072.1| Inner membrane lipoprotein yiaD [Yersinia intermedia ATCC 29909] Length = 219 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD SS P L + VL Sbjct: 83 VQEAKLREKMSGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD+ N LS RA S L+ GV+ +RI + SG Sbjct: 142 DKTAVNVTGYTDS---SGARAHNMTLSQQRADSVGSALIVQGVAANRI-RTSGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|296328184|ref|ZP_06870715.1| outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154696|gb|EFG95482.1| outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 394 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + I GHTD+ N Sbjct: 283 LITLDSGILFDVDKYDVRPEAEEVLKNLVIVLKEADIKAFEIDGHTDSDA---SDEHNQV 339 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS +RA + L G+ + I G+ R ++D NRR++I++ Sbjct: 340 LSENRANAVKNFLTSQGIMAE--ITIKGYGESRPIASNDTPEGKQKNRRVEIVI 391 >gi|74318359|ref|YP_316099.1| hypothetical protein Tbd_2341 [Thiobacillus denitrificans ATCC 25259] gi|74057854|gb|AAZ98294.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 225 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + AK + L + + V + +L+S+ FD S+ + Sbjct: 78 MDQQAKDLQKQLRPEIEHGDIS-VEKRASDNALLVSMTASTG---FDNDSAALKAGYLPT 133 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L KI VL + +++ GHTD+ + N LS RA S V+ R+ Sbjct: 134 LDKISRVLNQYGKTTVTVIGHTDSV---GTTQYNQALSERRAQSVLDYFASQKVNPLRLE 190 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 G + + + NRR+++ + Sbjct: 191 S-YGKGETEPRADNSTEDGRRLNRRVELWILP 221 >gi|78358627|ref|YP_390076.1| OmpA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221032|gb|ABB40381.1| OmpA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 306 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 + ++ I+ + +F S + LP I VL +I L + + GHT Sbjct: 107 QQNSMVQILSINDAVLFRPGSFVLLPGGIKVLDRILPWLLRVEHPLLLAGHTATQRAEEG 166 Query: 281 AR-----------DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPM 327 WRLS R + Y+ L G+ + + K+ FAH+R + + Sbjct: 167 QEYKVVFDEKQLAPTWRLSFMRVMAVYRYLTGRGMPAENL-KVEAFAHYRPRFDGTTPDG 225 Query: 328 NSANRRIDILVEDR 341 N R+DI+++ R Sbjct: 226 RRRNSRVDIVLDKR 239 Score = 42.6 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 1/94 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNPFGKN 75 + +K W I ++D MT+++ FF+++ ++ D+ + FG Sbjct: 1 MARKKNKKGGGGGAPKWLITFSDMMTLMLTFFVLLVSMSVLDERRKLVVLASVTGAFGIG 60 Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN 109 + + D N ++ D K+ Sbjct: 61 SGSFNPHAEDGANRIVEPGPMQMGSVNDLQPLKD 94 >gi|314955058|gb|EFS99464.1| OmpA family protein [Propionibacterium acnes HL027PA1] Length = 368 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S +VL I+ ++ G ++D NR Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 360 RVTITVKE 367 >gi|313144174|ref|ZP_07806367.1| OmpA family protein [Helicobacter cinaedi CCUG 18818] gi|313129205|gb|EFR46822.1| OmpA family protein [Helicobacter cinaedi CCUG 18818] Length = 156 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRG 270 ++G +R G I I++ F S + VL K +VL + I ++ G Sbjct: 21 LQGTGVSVSREGDGI-ILNMPGDITFKSGSDDLSSDFYKVLNK--KVLNKYDKTIVTVVG 77 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD + + N LS RA S L V +R + G ++ Sbjct: 78 FTDNT---GSDKTNLALSKKRAESVAAYLQNQKVKTERFV-VDGLGESEPIASNKTAEGR 133 Query: 329 SANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 134 AKNRRVEISLTAIQ 147 >gi|153870654|ref|ZP_02000009.1| conserved hypothetical protein, secreted [Beggiatoa sp. PS] gi|152072883|gb|EDN69994.1| conserved hypothetical protein, secreted [Beggiatoa sp. PS] Length = 187 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 13/150 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP---MFDKSSSIPLPETIVVL 252 A +I + L+ + G+ D +FD S++ PE+ +L Sbjct: 39 ADEIINALTPKPTYQRERKGFIR-DDKGVKAIRADDPKVGALILFDFDSAVIKPESYPLL 97 Query: 253 QKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI 309 ++ + L I I GHTD N LS R+ S L+ + G+++ R+ Sbjct: 98 REFAKALQSGLVDAQIIIAGHTDN---SGTETYNLNLSEQRSQSVKAFLISAYGIADTRL 154 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + I + ++ + NRR++ + Sbjct: 155 T-IKAHGESQPIEPNETESGRMKNRRVEFI 183 >gi|57169060|ref|ZP_00368187.1| fibronectin-binding protein [Campylobacter coli RM2228] gi|57019518|gb|EAL56209.1| fibronectin-binding protein [Campylobacter coli RM2228] Length = 332 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 229 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 285 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L K GV + RI + G+ + + +++ + NRR+D Sbjct: 286 AKELEKFGVDKSRIQTV-GYGQDKPRSSNETKEGRADNRRVD 326 >gi|148287120|emb|CAK36854.1| outer membrane protein A [Bordetella ansorpii] Length = 181 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ + A N +LS RA S Sbjct: 75 FFDFDKSTLKPEGRQLLDQVASQVNTINLETLIAVGHTDS--IGSDAY-NQKLSERRAAS 131 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G + ++ + NRR++I +V R+ Sbjct: 132 VKSYLVSKGIDPNRIY-TEGKGEKQPVASNSTREGRAKNRRVEIEIVGTRR 181 >gi|50841753|ref|YP_054980.1| putative outer membrane protein A [Propionibacterium acnes KPA171202] gi|289424480|ref|ZP_06426263.1| OmpA family protein [Propionibacterium acnes SK187] gi|289428850|ref|ZP_06430530.1| OmpA family protein [Propionibacterium acnes J165] gi|295129833|ref|YP_003580496.1| OmpA family protein [Propionibacterium acnes SK137] gi|50839355|gb|AAT82022.1| putative outer membrane protein A [Propionibacterium acnes KPA171202] gi|289155177|gb|EFD03859.1| OmpA family protein [Propionibacterium acnes SK187] gi|289157851|gb|EFD06074.1| OmpA family protein [Propionibacterium acnes J165] gi|291376750|gb|ADE00605.1| OmpA family protein [Propionibacterium acnes SK137] gi|313765278|gb|EFS36642.1| OmpA family protein [Propionibacterium acnes HL013PA1] gi|313772807|gb|EFS38773.1| OmpA family protein [Propionibacterium acnes HL074PA1] gi|313793172|gb|EFS41239.1| OmpA family protein [Propionibacterium acnes HL110PA1] gi|313806398|gb|EFS44905.1| OmpA family protein [Propionibacterium acnes HL087PA2] gi|313810947|gb|EFS48661.1| OmpA family protein [Propionibacterium acnes HL083PA1] gi|313814554|gb|EFS52268.1| OmpA family protein [Propionibacterium acnes HL025PA1] gi|313815353|gb|EFS53067.1| OmpA family protein [Propionibacterium acnes HL059PA1] gi|313817476|gb|EFS55190.1| OmpA family protein [Propionibacterium acnes HL046PA2] gi|313821987|gb|EFS59701.1| OmpA family protein [Propionibacterium acnes HL036PA1] gi|313824117|gb|EFS61831.1| OmpA family protein [Propionibacterium acnes HL036PA2] gi|313826484|gb|EFS64198.1| OmpA family protein [Propionibacterium acnes HL063PA1] gi|313831713|gb|EFS69427.1| OmpA family protein [Propionibacterium acnes HL007PA1] gi|313834406|gb|EFS72120.1| OmpA family protein [Propionibacterium acnes HL056PA1] gi|313840403|gb|EFS78117.1| OmpA family protein [Propionibacterium acnes HL086PA1] gi|314917220|gb|EFS81051.1| OmpA family protein [Propionibacterium acnes HL050PA1] gi|314921721|gb|EFS85552.1| OmpA family protein [Propionibacterium acnes HL050PA3] gi|314926563|gb|EFS90394.1| OmpA family protein [Propionibacterium acnes HL036PA3] gi|314931072|gb|EFS94903.1| OmpA family protein [Propionibacterium acnes HL067PA1] gi|314959098|gb|EFT03200.1| OmpA family protein [Propionibacterium acnes HL002PA1] gi|314961372|gb|EFT05473.1| OmpA family protein [Propionibacterium acnes HL002PA2] gi|314964584|gb|EFT08684.1| OmpA family protein [Propionibacterium acnes HL082PA1] gi|314969683|gb|EFT13781.1| OmpA family protein [Propionibacterium acnes HL037PA1] gi|314974747|gb|EFT18842.1| OmpA family protein [Propionibacterium acnes HL053PA1] gi|314977055|gb|EFT21150.1| OmpA family protein [Propionibacterium acnes HL045PA1] gi|314980286|gb|EFT24380.1| OmpA family protein [Propionibacterium acnes HL072PA2] gi|314985460|gb|EFT29552.1| OmpA family protein [Propionibacterium acnes HL005PA1] gi|314987369|gb|EFT31460.1| OmpA family protein [Propionibacterium acnes HL005PA2] gi|314989090|gb|EFT33181.1| OmpA family protein [Propionibacterium acnes HL005PA3] gi|315082724|gb|EFT54700.1| OmpA family protein [Propionibacterium acnes HL027PA2] gi|315086083|gb|EFT58059.1| OmpA family protein [Propionibacterium acnes HL002PA3] gi|315087668|gb|EFT59644.1| OmpA family protein [Propionibacterium acnes HL072PA1] gi|315097294|gb|EFT69270.1| OmpA family protein [Propionibacterium acnes HL038PA1] gi|315099483|gb|EFT71459.1| OmpA family protein [Propionibacterium acnes HL059PA2] gi|315102012|gb|EFT73988.1| OmpA family protein [Propionibacterium acnes HL046PA1] gi|315106289|gb|EFT78265.1| OmpA family protein [Propionibacterium acnes HL030PA1] gi|327331336|gb|EGE73075.1| putative outer membrane protein A [Propionibacterium acnes HL096PA2] gi|327333322|gb|EGE75042.1| putative outer membrane protein A [Propionibacterium acnes HL096PA3] gi|327445201|gb|EGE91855.1| OmpA family protein [Propionibacterium acnes HL013PA2] gi|327447284|gb|EGE93938.1| OmpA family protein [Propionibacterium acnes HL043PA1] gi|327450270|gb|EGE96924.1| OmpA family protein [Propionibacterium acnes HL043PA2] gi|327454535|gb|EGF01190.1| OmpA family protein [Propionibacterium acnes HL087PA3] gi|327456606|gb|EGF03261.1| OmpA family protein [Propionibacterium acnes HL083PA2] gi|327457118|gb|EGF03773.1| OmpA family protein [Propionibacterium acnes HL092PA1] gi|328755590|gb|EGF69206.1| OmpA family protein [Propionibacterium acnes HL087PA1] gi|328756916|gb|EGF70532.1| OmpA family protein [Propionibacterium acnes HL025PA2] gi|328758401|gb|EGF72017.1| OmpA family protein [Propionibacterium acnes HL020PA1] gi|328761148|gb|EGF74692.1| putative outer membrane protein A [Propionibacterium acnes HL099PA1] gi|332674672|gb|AEE71488.1| putative outer membrane protein A [Propionibacterium acnes 266] Length = 368 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S +VL I+ ++ G ++D NR Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 360 RVTITVKE 367 >gi|326800605|ref|YP_004318424.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326551369|gb|ADZ79754.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 441 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + LPE+ VL+ I +LA I + GHTDA + N LS RA + Sbjct: 337 LFSTGQATILPESEGVLKFIASILAEDQAAKIQVVGHTDAV---GDDKSNQILSERRAEA 393 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + L + + SG + + NRR++ + Sbjct: 394 VKRALTTRYGIAEISLQTSGKGESEPVADNQTVKGRTRNRRVEFI 438 >gi|315453529|ref|YP_004073799.1| putative flagellar motor protein [Helicobacter felis ATCC 49179] gi|315132581|emb|CBY83209.1| putative flagellar motor protein [Helicobacter felis ATCC 49179] Length = 253 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 69/173 (39%), Gaps = 11/173 (6%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 + F P + +++ +++ S S I +G + E T G ++ + Sbjct: 63 DSFQPVIPIPPAPGGRQEDTIEERESTQQSNPSQTTIKKIGEGSVLEQTDQGSVLKL--- 119 Query: 232 RNTPMF-DKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPF--RNIARDNWR 286 ++ +F + + +I ++ I++RG+TD +P +D++ Sbjct: 120 PSSLIFTEPYGDTINATMQEYIGRIASIIRALPSQVQINVRGYTDNTPIPAHIPFKDHYA 179 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 L+ RA + L+ G++ ++ + + + + +D N R++I Sbjct: 180 LAASRASKVMRELIADGINPQKL-SFTSYGANNPIVPNDSIENRMRNNRVEIF 231 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KK ++ W + YADF+++L+A F+ ++ I+ + KA+++ F + Sbjct: 3 KKAKKVECPA--GERWAVPYADFLSLLLALFIALYAISVVNKAKVKALKKEFLKI-FDYA 59 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 P + D + T+ S + + Sbjct: 60 PIPDSFQPVIPIPPAPGGRQEDTIEERESTQQSNPSQTTIKKIGEGS 106 >gi|262194690|ref|YP_003265899.1| cysteine-rich repeat protein [Haliangium ochraceum DSM 14365] gi|262078037|gb|ACY14006.1| cysteine-rich repeat protein [Haliangium ochraceum DSM 14365] Length = 1793 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 Q +F+ +S + E+ L + L + + I GHT + AR N RLS Sbjct: 1677 QVGKILFEFNSGVIKEESFPELDSVVRKLQSNPAVHLLIEGHTSSE---GSARYNRRLSG 1733 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSA--NRRIDILVEDRQ 342 RA S + L++ GV +R++ G +L I D + NRR++ + + Sbjct: 1734 VRAASVRKYLVEHGVEANRLAS-KGVGEAQLLIAPDDTEEARETNRRVEFTITRGR 1788 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 + I D ++ +S+ + +L + + +L + + ++GHT Sbjct: 1552 LEIGDDFKIA-YELNSANLQAASKEMLERDVLWILRAHPQIRVEVQGHTSGE---GKLAY 1607 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVED 340 N LS RA S L++ G+ +R+S + G + S+ NRRI+ ++ Sbjct: 1608 NMELSQRRAQSVVDFLVEHGIEGERLSAV-GHGPKVPLVTPENSEADRERNRRIEFSIQP 1666 Query: 341 RQ 342 R+ Sbjct: 1667 RR 1668 >gi|15606304|ref|NP_213683.1| flagellar motor protein MotB-like [Aquifex aeolicus VF5] gi|2983508|gb|AAC07085.1| flagellar motor protein MotB-like [Aquifex aeolicus VF5] Length = 224 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 25/175 (14%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +N +PP++ K A+K KKR IS L I + + Sbjct: 59 PPKNSVVPPITHPKDYAVKIKKR-------ISKVLPPWAYQ-------VVVAEEYIKLRL 104 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHT-DASPFRNIARDN 284 D F+ + L++I +L ++ IS + GH +N N Sbjct: 105 FD---RIFFENGDYKLTEKGRKTLEEIAPLLIALSDEISSIRVEGHVGPTVEIKNPIIRN 161 Query: 285 -WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 W L+ RA + L GV D++ +S + R + N R++I Sbjct: 162 KWELAGRRATEVIRYLENRGVPHDKLVAVS-YGDKRPLYRWRQSVLIERNNRVEI 215 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K + +W ++D M++L+ FF++++ ++ + + YF + Sbjct: 4 KKKEECPKP--PAWLTSFSDLMSLLLTFFILLYAMSTLEIPALEKFLSYFRKNPELYPPK 61 Query: 80 SKGIFDEQNPPERSSQNKIDLS 101 + + +P + + + K +S Sbjct: 62 NSVVPPITHPKDYAVKIKKRIS 83 >gi|254227754|ref|ZP_04921185.1| outer membrane protein OmpA [Vibrio sp. Ex25] gi|262395797|ref|YP_003287650.1| outer membrane protein A precursor [Vibrio sp. Ex25] gi|151939796|gb|EDN58623.1| outer membrane protein OmpA [Vibrio sp. Ex25] gi|262339391|gb|ACY53185.1| outer membrane protein A precursor [Vibrio sp. Ex25] Length = 330 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPATYNQKLS 267 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S L +G+ DR++ + G + NRR++++V Sbjct: 268 ERRAQSVADYLTAAGIDSDRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318 >gi|189464066|ref|ZP_03012851.1| hypothetical protein BACINT_00401 [Bacteroides intestinalis DSM 17393] gi|198275155|ref|ZP_03207686.1| hypothetical protein BACPLE_01313 [Bacteroides plebeius DSM 17135] gi|298482396|ref|ZP_07000582.1| outer membrane protein [Bacteroides sp. D22] gi|189438400|gb|EDV07385.1| hypothetical protein BACINT_00401 [Bacteroides intestinalis DSM 17393] gi|198271975|gb|EDY96245.1| hypothetical protein BACPLE_01313 [Bacteroides plebeius DSM 17135] gi|298271375|gb|EFI12950.1| outer membrane protein [Bacteroides sp. D22] Length = 213 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 77/187 (41%), Gaps = 6/187 (3%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + +D EK + + + + + +++R + + +KI + + L A + + + Sbjct: 30 AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 + G ++ +F S E +L + +++ I I GHTD Sbjct: 89 YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIISEIPNTKIKIIGHTDNI- 147 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335 + N LS +RA + L +G+ + I++ G++ S+ + NRR++ Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205 Query: 336 ILVEDRQ 342 I + + + Sbjct: 206 IFITNDE 212 >gi|99082187|ref|YP_614341.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99038467|gb|ABF65079.1| OmpA family protein [Ruegeria sp. TM1040] Length = 207 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ E VL + + + GHTDA N RL L RA +A Sbjct: 66 FDFDSARLDGEARRVLDTQAKWIRQFPEVRFRVYGHTDAV---GSQTYNKRLGLRRARAA 122 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ ++ F + I +D NRR Sbjct: 123 VNYLVSRGISRSRLEAVASFGETQPLIVTDQRERRNRR 160 >gi|221209294|ref|ZP_03582275.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221169982|gb|EEE02448.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 220 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + + +F + P L K+ + +S+ G+TD+ N Sbjct: 107 VEHVSLAGDALFASGLATLTPAARASLDKLLNAYGDRSYTQVSVTGYTDSV---GSDASN 163 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS RA + L + G++ R ++G A+ + NRR++I ++ Sbjct: 164 LALSKRRAEAVAAYLQQRGLNA-RTLTVTGRGSADPIATNATAEGRATNRRVEISLQR 220 >gi|33596991|ref|NP_884634.1| putative lipoprotein [Bordetella parapertussis 12822] gi|33566442|emb|CAE37695.1| putative lipoprotein [Bordetella parapertussis] Length = 200 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271 +GV + + I+++ +FD + L LQ I +++ +T +++I GH Sbjct: 70 EGVSVRQGKDAVTIAMM---GDVLFDFDKADILAAAEPTLQDIAKLIKSPATGIVAIEGH 126 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------- 324 TD+ + N LSL RA + Q L GV ++ + G R + Sbjct: 127 TDS---KGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKL-SVRGLGAARPVQPNQLANGAD 182 Query: 325 DP-MNSANRRIDILVEDR 341 +P + NRR++ ++ R Sbjct: 183 NPQGRAQNRRVEFVLPHR 200 >gi|296282963|ref|ZP_06860961.1| outer membrane protein [Citromicrobium bathyomarinum JL354] Length = 214 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 10/151 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L + + L GV E I ++ + F +S+ P L Sbjct: 58 LGDQFDDQIRELDEQTAGSGVDVEEIGDQDAI-LVRLPDGVTFATNSANINPSFQRTLDT 116 Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + + I + G TD + N +LS RA + L+ GVS RI Sbjct: 117 VAQSMIRYPNSLIDVYGFTDTT---GSPSYNQQLSEQRAQAVANYLVSQGVSRARI-ATR 172 Query: 314 GFAHH----RLKIASDPMNSANRRIDILVED 340 G+ R++ + NRR++I + Sbjct: 173 GYGEDPQYLRVRTGDNVNEPLNRRVEIKIVP 203 >gi|260911422|ref|ZP_05918013.1| lipoprotein PG3 [Prevotella sp. oral taxon 472 str. F0295] gi|260634469|gb|EEX52568.1| lipoprotein PG3 [Prevotella sp. oral taxon 472 str. F0295] Length = 225 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 7/148 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A+ + + E T G+ + + +F + ++ + L K +V Sbjct: 70 MDKVAKRTAEQVKSAKVEEVTDANGLKAVKVTFDSGILFATNKAVLSQSSKNELAKFSQV 129 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + I GHTD + I N LS RA S L GV + K+ G Sbjct: 130 LKENRDCHVDIYGHTDNTGNDGI---NIPLSNSRAQSVVNYLSNCGVPRGQFQKVEGKGS 186 Query: 318 HRLKIASDPMNSA--NRRIDILVEDRQG 343 ++ + NRR+++ + + Sbjct: 187 SEPVASNASASGRQQNRRVEVYLYASKA 214 >gi|314916069|gb|EFS79900.1| OmpA family protein [Propionibacterium acnes HL005PA4] Length = 368 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S +VL I+ ++ G ++D NR Sbjct: 304 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 360 RVTITVKE 367 >gi|294782148|ref|ZP_06747474.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA] gi|294480789|gb|EFG28564.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA] Length = 396 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%) Query: 228 IIDQRNTPMFDKSS--SIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 +I+ + +FD PE VL+ + VL I GHTD+ N Sbjct: 283 LINLDSEVLFDVDKYDVRVHPEAEEVLKNLAIVLKEMDVKNFEIDGHTDSD---GSDEYN 339 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 LS RA S L+ GV+ + G+ + ++D NRR++I++ Sbjct: 340 QVLSEKRANSVKNFLVSQGVTAE--ITTKGYGESKPVASNDTAEGKQKNRRVEIII 393 >gi|24212756|ref|NP_710237.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] gi|24193397|gb|AAN47255.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] Length = 687 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 18/274 (6%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 F L T + +P ++ +DL + I KN + + + Sbjct: 416 FATTLQTGKVYKIEISSPGFHPQEDILDLRGN--IGKNRKVYRTYVLLPIQVEEGKTEET 473 Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + +L D + ++ N L ++ K+ Sbjct: 474 KIEQPIENQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKK 533 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRN-------TPMFDKSSSI 243 L D ++ +T S ++++I + ++ G + I + + + F+ + + Sbjct: 534 LPDNDFELFATASKYISESI-NIIQKNISKNGTVTIYLKAESDVDPVYNLRVYFEFNKTK 592 Query: 244 PLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 E +L + G +L ++++ I I GHTD + N RLS RA + Y+ L+ Sbjct: 593 ITEENKKLLDPLVGYLLKNASDKIEIGGHTDN--VASKEY-NTRLSAKRARNVYEYLLSK 649 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 G+ E R+ +I + + + ++ + NRR+ Sbjct: 650 GIPEKRM-RIRAYWYSQPDADNETETGRAKNRRV 682 >gi|332293158|ref|YP_004431767.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171244|gb|AEE20499.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 236 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 68/175 (38%), Gaps = 17/175 (9%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 E + + ++ A++I L G E GI+++ D Sbjct: 62 ELGAVIGGVVGGGAGVLIGNKMDKQAQQIEQELPGA---------TVERIDDGIVVT-FD 111 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + + FD + + +L K+ ++ + + + GHTD+ +N LS Sbjct: 112 ENSGVYFDTAKYNVNTASQTLLNKLSNIMKEYNQTNVVVAGHTDSV---GSDTNNMTLSQ 168 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +RA + ++ +G+S R + + + + ++D + NRR+ + + + Sbjct: 169 NRANAVTNYMVGTGLSAGRFTTVW-YGETQPAASNDTAEGRAQNRRVQLAIVPNE 222 >gi|317011033|gb|ADU84780.1| flagellar motor protein MotB [Helicobacter pylori SouthAfrica7] Length = 257 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ ++ +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSSLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ GV Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLAKTRFKSHYELAANRAYRVMKVLMQYGVD 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVLVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|76809785|ref|YP_332623.1| ompA family protein [Burkholderia pseudomallei 1710b] gi|76579238|gb|ABA48713.1| ompA family protein [Burkholderia pseudomallei 1710b] Length = 316 Score = 75.7 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 209 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 265 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ +R+S G A++ + NRR++I + Q Sbjct: 266 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 314 >gi|58581150|ref|YP_200166.1| OmpA family protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623073|ref|YP_450445.1| OmpA family protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425744|gb|AAW74781.1| OmpA family protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367013|dbj|BAE68171.1| OmpA family protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 241 Score = 75.7 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S PE L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 163 DSV---GSDAANQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|120435967|ref|YP_861653.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578117|emb|CAL66586.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 235 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 17/152 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ AK+I + G E GI ++ D+ + FD ++ Sbjct: 77 NKMDKQAKQIEEEIPGA---------EVERVGEGINVT-FDESSGVYFDTEKYNINAKSQ 126 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ ++ + + GHTD + N LS +RA + L+ +G+ R Sbjct: 127 TTLNKLADIFKEYPQSNVLVEGHTDDT---GSDSYNLTLSKNRAQAVTGYLVDNGIDRGR 183 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + + + K + S NRR+++ + Sbjct: 184 FT-TKWYGESQPKYDNTTADGRSKNRRVELAI 214 >gi|146298460|ref|YP_001193051.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146152878|gb|ABQ03732.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 487 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPL---PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 F+ + ET L I E+L + SI GHTD + A+ N +LS DRA Sbjct: 375 FNSGKATFKTGDKETPARLDAIKEILKNYPNAKFSIEGHTDNT---GSAKINDKLSQDRA 431 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L++ GV+ + + GF + ++ + NRR +I Sbjct: 432 NAVLNALVERGVNPENLEA-KGFGSSQPVASNKTAAGKAQNRRTEI 476 >gi|4580966|gb|AAD24553.1|AF117961_1 OprF [Pseudomonas chlororaphis subsp. aureofaciens] Length = 325 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 219 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 275 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL GV R+ + G+ R A++ + NRR++ Sbjct: 276 KQVLTSQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 317 >gi|332521405|ref|ZP_08397859.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332042804|gb|EGI79003.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 646 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 16/145 (11%) Query: 209 DNIVKGVLFETTRTGILIS--IIDQR---NTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 D V E T+ + ++ I+D N FD S P+ L+ I V+ Sbjct: 501 DIKTSEVNAEETQVDLFLTPLIVDSEIVINPIFFDYDKSNIRPDAAYELENIVVVMREHP 560 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 VI I HTD+ R + N +LS RA S L G+++DRI G+ +L Sbjct: 561 NMVIKIESHTDS---RGRDKYNEKLSDRRAKSTRDYLFSRGIAKDRIESAIGYGESQLLN 617 Query: 323 A-------SDPMNSANRRIDILVED 340 S+ + NRR ++ Sbjct: 618 KCSNGVKCSEEEHQKNRRSKFIITS 642 >gi|313675126|ref|YP_004053122.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312941824|gb|ADR21014.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 699 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +SS + L ++ +++ I I HTD + A N RLS +RA S Sbjct: 590 FESNSSALFESSFEELDRVIKLMKSYPSMKIEIAAHTDD--VGSAAY-NTRLSQERANSV 646 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + + ++E R+ G+ + +A+D + NRR+++ + D Q Sbjct: 647 ISYITGNSIAEGRLIS-KGYGESKPVVANDSEENRAKNRRVELKILDIQ 694 >gi|332673379|gb|AEE70196.1| flagellar motor protein MotB [Helicobacter pylori 83] Length = 255 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|297564278|ref|YP_003683251.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848727|gb|ADH70745.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 534 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 21/189 (11%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + ++ + + PP S E + R+ +A + + V I Sbjct: 181 EEERADPQDPNGADHLTPDDPPPSGENLTFANRRPDADAVADE--GWVQSFVDSEIAS-- 236 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGH 271 TTR G II + MF+ S E V+++ LA + + VI++ GH Sbjct: 237 ---TTRDGDR-EIISLHSDVMFEFDRSDLTSEAEDVVRRAATSLARNVDPDEPVITVIGH 292 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDP 326 TD+ + DN LS+ RA S +L + + D ++ G H D Sbjct: 293 TDSI-GDDAYNDN--LSVQRAESVRDLLAEE-LGTDYTLEVEGRGEHEPIAREGGPDDDE 348 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 349 ARARNRRVE 357 >gi|226951234|ref|ZP_03821698.1| OmpA/MotB domain-containing protein [Acinetobacter sp. ATCC 27244] gi|226838028|gb|EEH70411.1| OmpA/MotB domain-containing protein [Acinetobacter sp. ATCC 27244] Length = 213 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + KK+ + G GV G + I+ + FD + S P Sbjct: 73 LDNKEKKLRQQMQGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 123 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ +VL + I + G+TD + N LS RA S L G++ +RI Sbjct: 124 LNKVAQVLGEDNQSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGIASNRID 180 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ + NRR++I + +Q Sbjct: 181 A-QGYGSSNPIADNSTAAGREQNRRVEISIYAKQ 213 >gi|224369820|ref|YP_002603984.1| OmpA2 [Desulfobacterium autotrophicum HRM2] gi|223692537|gb|ACN15820.1| OmpA2 [Desulfobacterium autotrophicum HRM2] Length = 503 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + + P + L + +L + I ++GHTD N +LSL R+ + Sbjct: 400 LFDYNKADIKPTSFDELDNVAMILKKNPALKIDLQGHTDNI---GSKNFNMKLSLKRSAA 456 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L+ GV +R+ K GF R + + NRR+++L Sbjct: 457 VKTYLVSKGVPSERL-KTEGFGFSRPVDTNKTKEGRAKNRRVELL 500 >gi|86130189|ref|ZP_01048789.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85818864|gb|EAQ40023.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 236 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 19/176 (10%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 E + + ++ A++I + G E GI+++ D Sbjct: 62 ELGAVIGGVVGGGAGVLIGNKMDKQAQQIEQEIPGA---------SVERVDDGIVVT-FD 111 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLS 288 + + FD + + +L K+ ++ T VI + GHTD+ N LS Sbjct: 112 ENSGVYFDTAKYNINANSQTMLNKLSNIMKEYNQTNVI-VAGHTDSV---GSDASNLTLS 167 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +RA + ++ +G+S R + + + + ++D + NRR+ + + + Sbjct: 168 QNRANAVTNYMIGTGLSAGRFTTVW-YGEAQPAASNDTAEGRAQNRRVQLAIVPNE 222 >gi|269959951|ref|ZP_06174328.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835250|gb|EEZ89332.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 326 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 207 EEYGTGTFEFDSATLTDSVSERLDNFVNFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 263 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S L+ +G+ DR + + G + NRR++++V Sbjct: 264 ERRAQSVADYLIAAGIDADRFT-VKGMGEENPVADNSTHEGREKNRRVEVVV 314 >gi|166712665|ref|ZP_02243872.1| OmpA family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 241 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S PE L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 163 DSV---GSDAANQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|304398041|ref|ZP_07379916.1| OmpA/MotB domain protein [Pantoea sp. aB] gi|304354327|gb|EFM18699.1| OmpA/MotB domain protein [Pantoea sp. aB] Length = 219 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRNGDNIVLN-MPNNVTFDSNSSNLKPAGANTLTGVSMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ R + N RLS RA S L+ GV+ DR+ + G Sbjct: 142 PKTAVNVVGYTDSTGSRAL---NMRLSQQRAESVASALIVQGVASDRL-RTQGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 + + NRR++I + Sbjct: 198 ATNSTEAGKAQNRRVEITL 216 >gi|197295086|ref|YP_002153627.1| putative outer membrane protein [Burkholderia cenocepacia J2315] gi|195944565|emb|CAR57169.1| putative outer membrane protein [Burkholderia cenocepacia J2315] Length = 220 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ P L K+ L + + + G+TDA+ N LS RA Sbjct: 118 FATDSAVLTPAATATLDKL---LNQQGDRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ D + +G ++D + NRR++I ++ Sbjct: 172 DAVAGYLREHGLKADSFAA-NGHGEANPAASNDTVEGRARNRRVEISLQ 219 >gi|171315988|ref|ZP_02905216.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171098892|gb|EDT43683.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 592 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 ++ + +FD + T ++ + + AH + + + G+ D N + Sbjct: 467 VVTLDSMSLFDSGKARLRTGTTRAMVDALELIKAHPDKRVLVAGYADDQ---GRPDRNLK 523 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS+DRA + L+++ G+ R I G+ R + + NRR++I + Sbjct: 524 LSIDRASAVRDWLVEASGIPPTRF-AIQGYGDTRPVADNATPEGRAKNRRVEITLVP 579 >gi|256028784|ref|ZP_05442618.1| Outer membrane protein [Fusobacterium sp. D11] Length = 191 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD SI + +L+ I E + + I+I GHTD+ + N+ Sbjct: 62 TIVLDERSLNFDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDS--IGSNQY-NFG 118 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 LS RA + L++ G++EDRI I + + + NRR++ + R+ Sbjct: 119 LSRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQREA 177 >gi|189347522|ref|YP_001944051.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245] gi|189341669|gb|ACD91072.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245] Length = 349 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P + L +I ++L + + GHTD N LS RA + Sbjct: 247 FDTNKADIKPASKPALGEIAKLLKKQPAMKLHVVGHTDN---AGGYEFNVSLSKRRADAV 303 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 VL K G++ R++ +G A+ ++ + + NRR++++ Sbjct: 304 VGVLQKEYGIAPGRLTA-NGVAYLAPVASNAAEAGRAKNRRVELV 347 >gi|153949077|ref|YP_001403078.1| outer membrane lipoprotein [Yersinia pseudotuberculosis IP 31758] gi|152960572|gb|ABS48033.1| OmpA family protein [Yersinia pseudotuberculosis IP 31758] Length = 219 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLREKMSGTGVSVTRQGENIVLN-MPNNVTFDTNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N LS RA + L+ GV+ +RI + G Sbjct: 142 DKTAVNVTGYTDST---GARAHNIVLSQQRADNVASALIVQGVAANRI-RTYGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|299771293|ref|YP_003733319.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter sp. DR1] gi|298701381|gb|ADI91946.1| Inner membrane lipoprotein yiaD precursor [Acinetobacter sp. DR1] Length = 217 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L KK+ ++G GV G + I+ + FD + S P Sbjct: 77 LDQKEKKLRQQMAGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYST 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + LA + I + G+TD + N LS RA S L GVS RI Sbjct: 128 LNKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVRSYLASQGVSASRID 184 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 GF ++ NRR++I + +Q Sbjct: 185 A-QGFGSSNPIADNSTATGREQNRRVEISIYAKQ 217 >gi|256819127|ref|YP_003140406.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256580710|gb|ACU91845.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 230 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ AKKI + G + GI+++ + FD + ++ Sbjct: 75 NQMDKQAKKIEEEIPGAD---------VKRVDDGIVVTFDENNGGVYFDTNKYNINNKSR 125 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ +L + + + GHTD N LS RA + G+ R Sbjct: 126 QTLDKLSAILKEYPDTNVIVAGHTDNV---GKDEYNLGLSQRRAQAVTNYFKSKGLVGSR 182 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + +++ + NRR+++++ + Sbjct: 183 FT-TKWYGERNPVASNETADGRAKNRRVNVVIVPNE 217 >gi|188575664|ref|YP_001912593.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520116|gb|ACD58061.1| OmpA family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 241 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S PE L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 163 DSV---GSDAANQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|289766688|ref|ZP_06526066.1| outer membrane protein [Fusobacterium sp. D11] gi|289718243|gb|EFD82255.1| outer membrane protein [Fusobacterium sp. D11] Length = 180 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD SI + +L+ I E + + I+I GHTD+ + N+ Sbjct: 51 TIVLDERSLNFDFDKSIVKAQYFDLLKNIKEFVEQNNYEITIVGHTDS--IGSNQY-NFG 107 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 LS RA + L++ G++EDRI I + + + NRR++ + R+ Sbjct: 108 LSRRRAEAVKAKLLEFGLAEDRIVGIEAMGEEQPIATNATKEGRAQNRRVEFKLVQREA 166 >gi|301059327|ref|ZP_07200254.1| OmpA family protein [delta proteobacterium NaphS2] gi|300446556|gb|EFK10394.1| OmpA family protein [delta proteobacterium NaphS2] Length = 434 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 11/154 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP----MFDKSSSIPLP 246 R Q + I S ++K + + I+ +FD + + P Sbjct: 283 RAQPMGITIESRQCHRGKQALIKNIRIAKGAKNLYDRIMTDGKFVTRGILFDVNKATLKP 342 Query: 247 ETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ V+ +I ++ AH + I GHTD+ N +LS +RA + L+ +GV Sbjct: 343 ASMGVINEIAKMMRAHEDINLRIEGHTDSD---GEKTFNQKLSEERAEAVKNALVDAGVD 399 Query: 306 EDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 R+ K GF + + + NRR++ + Sbjct: 400 SSRL-KTKGFGESKPVSDNTTAEGKANNRRVEFV 432 >gi|218778894|ref|YP_002430212.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760278|gb|ACL02744.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] Length = 215 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S P L + VL + +SI GH ++ N A +N+ LSL RA + Sbjct: 111 FDLNSMELNPAARSALDAVSSVLHVNKAVKLSIEGHACSA-GDNAAYNNY-LSLQRAQAV 168 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 L+ GV R+ ++G+ ++ ++ NRR++I+ Sbjct: 169 KDYLISRGVDGARM-SVTGYGANQPVKDNNSRAHRIQNRRVEIV 211 >gi|300770792|ref|ZP_07080670.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762349|gb|EFK59167.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 438 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST 263 + +V+ ++ ++D+ + FD S + L ++ +L Sbjct: 309 PVAETKVVEKIVVTEEDR----KVVDEAIKNLEFDLGKSTIRSTSYPSLDRVASLLIEKN 364 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD + + N RLS +RA + L G + RI +G+ ++ + Sbjct: 365 FSLKLAGHTDNT---GSMKTNLRLSKERAEAVKAYLSGKGANPSRIEA-TGYGPNQPIAS 420 Query: 324 SDPMNSA--NRRIDILV 338 + NRR++ + Sbjct: 421 NATAEGRQQNRRVEFTL 437 >gi|300770791|ref|ZP_07080669.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762348|gb|EFK59166.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 440 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST 263 + +V+ ++ ++D+ + FD S + L ++ +L Sbjct: 311 PVAETKVVEKIVVTEEDR----KVVDEAIKNLEFDLGKSTIRSTSYPSLDRVASLLIEKN 366 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD + + N RLS +RA + L G + RI +G+ ++ + Sbjct: 367 FSLKLAGHTDNT---GSMKTNLRLSKERAEAVKAYLSGKGANPSRIEA-TGYGPNQPIAS 422 Query: 324 SDPMNSA--NRRIDILV 338 + NRR++ + Sbjct: 423 NATAEGRQQNRRVEFTL 439 >gi|227538391|ref|ZP_03968440.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241773|gb|EEI91788.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 440 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST 263 + +V+ ++ ++D+ + FD S + L ++ +L Sbjct: 311 PVAETKVVEKIVVTEEDR----KVVDEAIKNLEFDLGKSTIRSTSYPSLDRVASLLIEKN 366 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + GHTD + + N RLS +RA + L G + RI +G+ ++ + Sbjct: 367 FSLKLAGHTDNT---GSMKTNLRLSKERAEAVKAYLSGKGANPSRIEA-TGYGPNQPIAS 422 Query: 324 SDPMNSA--NRRIDILV 338 + NRR++ + Sbjct: 423 NATAEGRQQNRRVEFTL 439 >gi|322835249|ref|YP_004215275.1| OmpA/MotB domain protein [Rahnella sp. Y9602] gi|321170450|gb|ADW76148.1| OmpA/MotB domain protein [Rahnella sp. Y9602] Length = 558 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD P ++ +L + ++ A +I + GHTD A+ N LSL RA Sbjct: 437 SLFDTGKYELKPGSLKMLVNTLVDIKAKPGWLIVVAGHTD---ITGDAKANQTLSLKRAG 493 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 S +L S VS + G+ R +D +ANRR++I + + Sbjct: 494 SLRDWMLSTSDVSPT-CFAVQGYGATRPVATNDTPEGRAANRRVEISLVPQ 543 >gi|149195189|ref|ZP_01872279.1| OmpA domain protein [Caminibacter mediatlanticus TB-2] gi|149134622|gb|EDM23108.1| OmpA domain protein [Caminibacter mediatlanticus TB-2] Length = 383 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S+ PE + ++K E L + I+G+TD R A N LS RA + Sbjct: 281 FDTNSAKIKPEYMPKIEKFAEFLKNHPDVKAEIQGYTDN---RGSATYNMILSEKRAKAV 337 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 Y+ L+K GV++D+I+ + G+ ++D + NRR+ Sbjct: 338 YEALLKLGVNKDQITFV-GYGEANPIASNDTPEGRAKNRRV 377 >gi|161520025|ref|YP_001583452.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189353793|ref|YP_001949420.1| OmpA/MotB family outer membrane protein [Burkholderia multivorans ATCC 17616] gi|160344075|gb|ABX17160.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189337815|dbj|BAG46884.1| OmpA/MotB family outer membrane protein [Burkholderia multivorans ATCC 17616] Length = 220 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + + +F + P L K+ A + +S+ G+TD+ N Sbjct: 107 VEHVSLAGDALFASGLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSV---GSDASN 163 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L + G++ R ++G ++ + NRR++I ++ Sbjct: 164 LALSKRRAEAVAAYLQQRGLNA-RTLTVTGRGSADPIASNATAEGRATNRRVEISLQR 220 >gi|114764072|ref|ZP_01443311.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601] gi|114543430|gb|EAU46445.1| OmpA domain protein [Roseovarius sp. HTCC2601] Length = 221 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V T + I+ +F S + ++ +G L Sbjct: 87 EAELRQQLGNDVGIRNTGDRL---IVTMPQDILFGFDSDTLRNDLQADIRTVGSSLLQYP 143 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + GHTD+ A N LS RA S VL+ SGV RI + G Sbjct: 144 NTSVQVVGHTDSD---GDAGYNQGLSQRRAQSVANVLVSSGVPSSRI-SVIGRGEAAPVA 199 Query: 323 AS--DPMNSANRRIDILVED 340 ++ + NRR++I++ Sbjct: 200 SNLTPEGKAQNRRVEIVILP 219 >gi|189423758|ref|YP_001950935.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] gi|189420017|gb|ACD94415.1| OmpA/MotB domain protein [Geobacter lovleyi SZ] Length = 443 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SI + L+ +G+ L I GHTD + N LS RA + Sbjct: 306 FDTGKSIIKKQYYDELKVVGDGLNEQKNLKGVIEGHTDNV---GSDKSNLALSQRRANAV 362 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 ++K+ + + G+ + + NRRI+ Sbjct: 363 RDYIVKNFKIDRKRLAAKGYGESKPIADNATAEGREQNRRIE 404 >gi|224437727|ref|ZP_03658674.1| OmpA family protein [Helicobacter cinaedi CCUG 18818] Length = 147 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRG 270 ++G +R G I I++ F S + VL K +VL + I ++ G Sbjct: 12 LQGTGVSVSREGDGI-ILNMPGDITFKSGSDDLSSDFYKVLNK--KVLNKYDKTIVTVVG 68 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD + + N LS RA S L V +R + G ++ Sbjct: 69 FTDNT---GSDKTNLALSKKRAESVAAYLQNQKVKTERFV-VDGLGESEPIASNKTAEGR 124 Query: 329 SANRRIDILVEDRQ 342 + NRR++I + Q Sbjct: 125 AKNRRVEISLTAIQ 138 >gi|315082132|gb|EFT54108.1| OmpA family protein [Propionibacterium acnes HL078PA1] Length = 368 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 13/127 (10%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASP 276 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 249 VTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS-- 303 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRR 333 A N LS RA S +VL I+ ++ G ++D NRR Sbjct: 304 -SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNRR 360 Query: 334 IDILVED 340 + I V++ Sbjct: 361 VTITVKE 367 >gi|244538688|dbj|BAH82838.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 19/161 (11%) Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 K K++++ K+I + ++ + E T I F Sbjct: 175 KAPKTPQTTTKQIEEKPQTKQIDKSCPEPRKGALLDHIGCEKT--------IALEGHFGF 226 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296 D+ S PE +Q++G+VL + + +I GHTD++ N +LSL+RA + Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVA 281 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L KSGV++++I G+ + K ++D + NRR++ Sbjct: 282 KELEKSGVAKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|154244938|ref|YP_001415896.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159023|gb|ABS66239.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2] Length = 296 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 51/201 (25%) Query: 184 LAMKRKKRLQDLAKKISSTL-----SGLVADNIVKGVLFETTRTGILISIIDQ------- 231 +A + ++L ++ ++ S + S V +++ + + G+ + I +Q Sbjct: 57 VAREVARKLDAMSGQVRSAIATVDASQQVRRQLLQDIESQLRAEGLNVQIDEQNGVLRLT 116 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--------------------TEV------ 265 + F+ S S + KI VL Sbjct: 117 EDAVRFEPSRSDLAGRARSNVDKIARVLDRVLPAYTACHVAEGAAGGTACQPGAGPSLET 176 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG--------VSEDRISKISGFAH 317 + I GHTD++ NW+LS +RA + Y+ ++ + + I +SG+A Sbjct: 177 VFIEGHTDST---GEDGTNWQLSTERAVNTYRAIVAGAPRLRGLRNLRGEEILSVSGYAS 233 Query: 318 HRLKIASDPMN--SANRRIDI 336 R ++ + NRRID+ Sbjct: 234 TRPIDPTESREAWARNRRIDL 254 >gi|289670151|ref|ZP_06491226.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 241 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S PE L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAKN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|172062678|ref|YP_001810329.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171995195|gb|ACB66113.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 587 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 228 IIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 ++ + +FD + T ++ + + AHS + + + G+ D N + Sbjct: 462 VVTLDSMSLFDSGKATLRTGTTRAMVDALELIKAHSGKRVLVAGYADDQ---GRPDRNLK 518 Query: 287 LSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS+DRA + L+++ G+ R I G+ R + + NRR++I + Sbjct: 519 LSIDRASAVRDWLVEASGIPPTRF-AIQGYGDTRPVADNATPEGRAKNRRVEITLVP 574 >gi|159025742|emb|CAO02045.1| outer membrane protein A [Bordetella hinzii] gi|159025744|emb|CAO02046.1| outer membrane protein A [Bordetella hinzii] gi|159025746|emb|CAO02047.1| outer membrane protein A [Bordetella hinzii] Length = 177 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE +L ++ + I GHTD+ A N +LS RA S Sbjct: 70 FFDFDKSVLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 126 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342 L+ G+ +RI G + + + NRR++I +V R+ Sbjct: 127 VKAYLVSKGIDPNRIY-TEGKGELQPIATNKTAEGRARNRRVEIEIVGSRR 176 >gi|149276320|ref|ZP_01882464.1| OmpA/MotB [Pedobacter sp. BAL39] gi|149232840|gb|EDM38215.1| OmpA/MotB [Pedobacter sp. BAL39] Length = 448 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 103/335 (30%), Gaps = 44/335 (13%) Query: 39 DFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKI 98 D+ L A F I + KK I + G M++ + E P ++ Sbjct: 122 DWSAALSANF----TIANLSLNQKKNILSPYATIGAGYMSSGATLRTEAGAPAIANATNQ 177 Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 + K+G +N N N N + G ++ Sbjct: 178 GF-HENWFVPVGAGFKLGISNGVNIDLGYNVNFVKGKNFDGVSGAANDRFSYAHAGVEIA 236 Query: 159 KSTDLEKSINK-------EENYFLPPLSKEKILAMKRKKRLQDL---AKKISSTLSGLVA 208 + E + L+ + + RL+D AK + VA Sbjct: 237 LGKKGAPQLQNFSPIAALREQSAAESAELRRALSTEEQNRLRDQEQYAKDMGDDDGDGVA 296 Query: 209 DNI------------------VKGVLFETTRTGILIS----IIDQRNTPM-FDKSSSIPL 245 + +K T I+ ++D+ + FD + Sbjct: 297 NKFDKCPGTPANTQVDGAGCPLKTPRPIVTEKVIVTEADRRVVDEAIKNLEFDLGKATIR 356 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + L ++ +L + + GHTD + N RLS +RA S L+ GV+ Sbjct: 357 STSFNTLNRVAALLVEKNFSLKLAGHTDNT---GSMALNLRLSKERAESVKAYLVSQGVN 413 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 R+ +G+ ++ + NRR++ + Sbjct: 414 ASRVEA-TGYGPNQPIATNKTAAGRQQNRRVEFTL 447 >gi|213964216|ref|ZP_03392450.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sputigena Capno] gi|213953135|gb|EEB64483.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sputigena Capno] Length = 919 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 22/202 (10%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 T +E I + E + P+ + ++ + + + + DN + V Sbjct: 722 ASGTPIEAQIRQGEGEEMMPVDEVVVIEEGKLNADGNFEYNVGDLFQLSLFDNTMLEVGK 781 Query: 218 ETTRTGILISIIDQR--------------NTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 ++ ++ I D+ + F S + L+ I +L Sbjct: 782 NSSEAHLVKLIEDKSLTTPEQFKDNWITLDRTYFKTGSDELTEGSEQQLKNIVAILKAYP 841 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I + G+TD + A N +LS RA S L+ G ++ ++S G+ Sbjct: 842 KAAIRLGGYTDNT---GSAEGNLKLSERRANSVLNKLVALGANKAQLSA-QGYGQEHPVC 897 Query: 323 ASDPMN---SANRRIDILVEDR 341 ++ + + NRRIDI + + Sbjct: 898 PANDTDECKAKNRRIDIRLTAK 919 >gi|188527339|ref|YP_001910026.1| flagellar motor protein MotB [Helicobacter pylori Shi470] gi|188143579|gb|ACD47996.1| flagellar motor protein MotB [Helicobacter pylori Shi470] Length = 255 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLDKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|78047093|ref|YP_363268.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294626580|ref|ZP_06705178.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665669|ref|ZP_06730945.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|78035523|emb|CAJ23169.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292599147|gb|EFF43286.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604564|gb|EFF47939.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 241 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S P+ L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPQFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 163 DSV---GSDAVNQRLSEERASAVAQYLTAQGVQRERMETMGAGKRYPIADNTTDAGRAKN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|124005217|ref|ZP_01690059.1| outer membrane protein [Microscilla marina ATCC 23134] gi|123989469|gb|EAY29030.1| outer membrane protein [Microscilla marina ATCC 23134] Length = 687 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 12/189 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 K+ +S K Y + ++K + K + I + + Sbjct: 508 STGKNVGRGRSNPKTGEYKVVLPLEQKYALLAEAKGFLSVDTTIDLKGITKYTEIVADLY 567 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 L G++ + N F + S+ LPE+ L ++ + + + I + GHT+ Sbjct: 568 LVPIESGGLV-----RLNNIFFSRGSARLLPESYPELNRLAKAMKENPTMRIRLEGHTEI 622 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR 332 + + LS R S + L + G+++ R+ K+ GF + R + + NR Sbjct: 623 FGNKKFLMN---LSKQRVKSVQKYLSEKGINDRRV-KLKGFGYKRPLSRKKDEKSRALNR 678 Query: 333 RIDILVEDR 341 R+++ + + Sbjct: 679 RVEVRILSK 687 >gi|308182972|ref|YP_003927099.1| flagellar motor protein MotB [Helicobacter pylori PeCan4] gi|308065157|gb|ADO07049.1| flagellar motor protein MotB [Helicobacter pylori PeCan4] Length = 255 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLDKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|238783060|ref|ZP_04627087.1| Inner membrane lipoprotein yiaD [Yersinia bercovieri ATCC 43970] gi|238716061|gb|EEQ08046.1| Inner membrane lipoprotein yiaD [Yersinia bercovieri ATCC 43970] Length = 219 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD SS P L + VL Sbjct: 83 VQEAKLREKMNGTGVSVTRQGDNIVLN-MPNNVTFDTDSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G TD+ N LS RA S L+ GV+ +R+ + SG Sbjct: 142 DKTAVNVTGFTDS---SGARAHNMTLSQQRADSVGSALIMQGVAANRV-RTSGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|326317618|ref|YP_004235290.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374454|gb|ADX46723.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 188 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +++ FE T G + + +FD S E+ + ++G LA + + + Sbjct: 62 VLRQYGFEPTDAGWELQMS---GKLLFDFDSVELNAESHDGVLRMGRALADVGIDALRVE 118 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPM 327 GHTD N RLSL RA + +VL ++G+ D I + G R + S Sbjct: 119 GHTDEQ---GARAYNERLSLRRAQAVARVLAEAGLPADHIGTV-GLGASRPVVQGTSAAS 174 Query: 328 NSANRRIDILV 338 NRR+ I+V Sbjct: 175 RRENRRVAIIV 185 >gi|256822902|ref|YP_003146865.1| OmpA/MotB domain-containing protein [Kangiella koreensis DSM 16069] gi|256796441|gb|ACV27097.1| OmpA/MotB domain protein [Kangiella koreensis DSM 16069] Length = 221 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 17/152 (11%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + K++ L+G R G I +I F V Sbjct: 80 MDSQEKELREELAGT---------GVGVQRDGEQIHLI-MPGDITFQTDRYAIDSGFYPV 129 Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + +VL + + G TD+ N LS RA S L + + +R+ Sbjct: 130 LDSVSKVLYKFKDTNLEVAGFTDSV---GSDSYNQELSEKRANSVASYLRQREIPNNRL- 185 Query: 311 KISGFAHHRLKIASDPM--NSANRRIDILVED 340 ++ G+ ++ S NRR+++ + Sbjct: 186 RVVGYGERYPVAPNETEAGRSKNRRVELTITP 217 >gi|222869877|gb|EEF07008.1| predicted protein [Populus trichocarpa] Length = 219 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 D + FD + S +L + E L ++ + I GHTD++ I LS Sbjct: 81 DIPSDISFDTNRSDIKGNFAPILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNP---LS 137 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 LDRA S L GVS RI G H+ ++D + NRR++I V Sbjct: 138 LDRANSTRNYLTMRGVSGARI-ATEGRGSHQPVASNDSASGRAMNRRVEIFV 188 >gi|289662994|ref|ZP_06484575.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 241 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S PE L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPEFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMDTMGAGKRYPIADNNTDAGRAKN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|156974655|ref|YP_001445562.1| hypothetical protein VIBHAR_02373 [Vibrio harveyi ATCC BAA-1116] gi|156526249|gb|ABU71335.1| hypothetical protein VIBHAR_02373 [Vibrio harveyi ATCC BAA-1116] Length = 208 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F SS P + + + L I ++G+T N LS RA Sbjct: 85 RVLFANDSSAIEPVFVNQISDLSNFLKEYPTTSIELQGYTS---ITGTDEYNLALSKRRA 141 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S Q L+ +G+S +R+ +I GF L + ++ NRR+ V +G Sbjct: 142 ESVRQELINNGISPERL-RIVGFGETNLASQGTDETSHALNRRVTATVVGYKG 193 >gi|78221563|ref|YP_383310.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Geobacter metallireducens GS-15] gi|78192818|gb|ABB30585.1| Thrombospondin type 3 repeat:OmpA/MotB [Geobacter metallireducens GS-15] Length = 447 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE ++++ + L + I GHTD+ + + N +LS RA + Sbjct: 338 FDFDKANIKPEFRDEIKRVADFLKEYPDATAVIEGHTDS---KGTVKYNQKLSERRAKAV 394 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRI 334 + L+ G+S R+S G+ + A++ NRR+ Sbjct: 395 MKNLVDEFGISAKRLSA-KGYGETKPVADNATEEGRQKNRRV 435 >gi|85713659|ref|ZP_01044649.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85699563|gb|EAQ37430.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 463 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + P++I +L ++ E L T I I GHTD A N LS RA + Sbjct: 361 FETGKATLDPDSIGLLDQLTETALRCPTATIEIVGHTDGD---GDASFNQALSERRAQAV 417 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 ++K+G+ +R + G+ + +D + NRRID +V Sbjct: 418 VDFMVKAGLPANRF-RPIGYGSAQPIATNDTDEGKAKNRRIDFIV 461 >gi|238764428|ref|ZP_04625377.1| hypothetical protein ykris0001_27500 [Yersinia kristensenii ATCC 33638] gi|238697344|gb|EEP90112.1| hypothetical protein ykris0001_27500 [Yersinia kristensenii ATCC 33638] Length = 538 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP-ETIVV 251 Q L + + + + + T + + +FD P T ++ Sbjct: 383 QRLWLALQQAIDTYIPPPPPPTPVEKQTPKTVRL-----DALSLFDTGKYQLKPGSTKML 437 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-VLMKSGVSEDRIS 310 + + ++ A +I + GHTD A N LSL RA + +L S VS Sbjct: 438 VSALIDIRAKPGWLIVVAGHTD---ITGDAGANQTLSLKRAEALRDWMLSTSDVSPT-CF 493 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + G+ R ++ + NRR++I + + Sbjct: 494 AVQGYGATRPIATNESTEGRALNRRVEISLVPQ 526 >gi|242278087|ref|YP_002990216.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242120981|gb|ACS78677.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 356 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F E + L + +L + + GHTD+ N LS RA S Sbjct: 254 FGFDKYQITDEMVPALTEAATMLEEFPNLKVLVGGHTDS---SGSEAYNQGLSERRAKSV 310 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L +G++ R+ + G+ K + NRR++I VED Sbjct: 311 ADWLAANGIAPKRLE-VKGYGEMNPKYDNKTKEGRKLNRRVEIDVED 356 >gi|149186172|ref|ZP_01864486.1| putative outer membrane lipoprotein [Erythrobacter sp. SD-21] gi|148830203|gb|EDL48640.1| putative outer membrane lipoprotein [Erythrobacter sp. SD-21] Length = 245 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++S+ LP + ++L ++ L + +I+I GHT+ N LS+DRA Sbjct: 130 FQEASAALLPASRILLDEVAAALEPCSGAIIAITGHTNK---SGSEAANLALSMDRARVV 186 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + L++ G+ + + G P + ANRRI+ V Sbjct: 187 REALVRRGIPRSSL-RARGMGSSEPAERLKPEDPANRRIEFSV 228 >gi|21230892|ref|NP_636809.1| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769109|ref|YP_243871.1| outer membrane protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992257|ref|YP_001904267.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. campestris str. B100] gi|21112502|gb|AAM40733.1| outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574441|gb|AAY49851.1| outer membrane protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734017|emb|CAP52223.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. campestris] Length = 241 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S P+ L + L + ++ + GHT Sbjct: 104 NTGIDVQRQGDNITLN-LPDGITFDFGKSALKPQFYTALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + ++D + N Sbjct: 163 DSV---GSDAVNQRLSEERANAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQN 219 Query: 332 RRIDI 336 RR++I Sbjct: 220 RRVEI 224 >gi|22127962|ref|NP_671385.1| putative outer membrane lipoprotein [Yersinia pestis KIM 10] gi|45443710|ref|NP_995249.1| putative outer membrane lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|51598197|ref|YP_072388.1| outer membrane lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108808999|ref|YP_652915.1| putative outer membrane lipoprotein [Yersinia pestis Antiqua] gi|108813881|ref|YP_649648.1| putative outer membrane lipoprotein [Yersinia pestis Nepal516] gi|145597343|ref|YP_001161418.1| putative outer membrane lipoprotein [Yersinia pestis Pestoides F] gi|150260986|ref|ZP_01917714.1| putative lipoprotein [Yersinia pestis CA88-4125] gi|162420588|ref|YP_001608097.1| putative outer membrane lipoprotein [Yersinia pestis Angola] gi|165926066|ref|ZP_02221898.1| OmpA family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936922|ref|ZP_02225488.1| OmpA family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009516|ref|ZP_02230414.1| OmpA family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166213252|ref|ZP_02239287.1| OmpA family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398489|ref|ZP_02304013.1| OmpA family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421106|ref|ZP_02312859.1| OmpA family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425514|ref|ZP_02317267.1| OmpA family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467912|ref|ZP_02332616.1| OmpA family protein [Yersinia pestis FV-1] gi|170022281|ref|YP_001718786.1| putative outer membrane lipoprotein [Yersinia pseudotuberculosis YPIII] gi|186897420|ref|YP_001874532.1| putative outer membrane lipoprotein [Yersinia pseudotuberculosis PB1/+] gi|218931056|ref|YP_002348931.1| putative outer membrane lipoprotein [Yersinia pestis CO92] gi|229839783|ref|ZP_04459942.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841867|ref|ZP_04462023.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229896745|ref|ZP_04511909.1| putative lipoprotein [Yersinia pestis Pestoides A] gi|229904405|ref|ZP_04519516.1| putative lipoprotein [Yersinia pestis Nepal516] gi|270488345|ref|ZP_06205419.1| OmpA family protein [Yersinia pestis KIM D27] gi|294505605|ref|YP_003569667.1| putative lipoprotein [Yersinia pestis Z176003] gi|21961106|gb|AAM87636.1|AE014011_3 putative outer membrane protein [Yersinia pestis KIM 10] gi|45438580|gb|AAS64126.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|51591479|emb|CAH23150.1| OmpA-OmpF family porin [Yersinia pseudotuberculosis IP 32953] gi|108777529|gb|ABG20048.1| lipoprotein [Yersinia pestis Nepal516] gi|108780912|gb|ABG14970.1| putative lipoprotein [Yersinia pestis Antiqua] gi|115349667|emb|CAL22647.1| putative lipoprotein [Yersinia pestis CO92] gi|145209039|gb|ABP38446.1| lipoprotein [Yersinia pestis Pestoides F] gi|149290394|gb|EDM40471.1| putative lipoprotein [Yersinia pestis CA88-4125] gi|162353403|gb|ABX87351.1| OmpA family protein [Yersinia pestis Angola] gi|165915164|gb|EDR33775.1| OmpA family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165921926|gb|EDR39103.1| OmpA family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991438|gb|EDR43739.1| OmpA family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166205550|gb|EDR50030.1| OmpA family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961235|gb|EDR57256.1| OmpA family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050993|gb|EDR62401.1| OmpA family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055528|gb|EDR65321.1| OmpA family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748815|gb|ACA66333.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] gi|186700446|gb|ACC91075.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678523|gb|EEO74628.1| putative lipoprotein [Yersinia pestis Nepal516] gi|229691206|gb|EEO83259.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229696149|gb|EEO86196.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700284|gb|EEO88319.1| putative lipoprotein [Yersinia pestis Pestoides A] gi|262363769|gb|ACY60490.1| putative lipoprotein [Yersinia pestis D106004] gi|262367705|gb|ACY64262.1| putative lipoprotein [Yersinia pestis D182038] gi|270336849|gb|EFA47626.1| OmpA family protein [Yersinia pestis KIM D27] gi|294356064|gb|ADE66405.1| putative lipoprotein [Yersinia pestis Z176003] gi|320017406|gb|ADW00978.1| putative lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 219 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLREKMSGTGVSVTRQGENIVLN-MPNNVTFDTNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N LS RA + L+ GV+ +RI + G Sbjct: 142 DKTAVNVTGYTDST---GARAHNIVLSQQRADNVASALIVQGVAANRI-RTYGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 ++ + NRR++I + Sbjct: 198 ASNSTAAGKAQNRRVEITL 216 >gi|149178718|ref|ZP_01857301.1| hypothetical protein PM8797T_01394 [Planctomyces maris DSM 8797] gi|148842416|gb|EDL56796.1| hypothetical protein PM8797T_01394 [Planctomyces maris DSM 8797] Length = 242 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 3/107 (2%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR--NIARDNWRLSLDRAYS 294 F + S+ PE L I E+L + + +RGH P + D+ LS RA + Sbjct: 125 FGRFSAELTPEIKQKLDIIAEILLPTPNRLIVRGHASPEPLPKDSKFLDSQELSFYRAKN 184 Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + L G+ +R I G A R + NRR+D+ + D Sbjct: 185 VAEYLESKGIEPERLIVSSVGDAEPRTITRNPEEQYLNRRVDVFLID 231 Score = 43.3 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT--DDDTKKAIEQYFNPFGKNLMTASK 81 +D P + W + Y D M++L+ FF+++ ++ D+ + +A+ + Sbjct: 6 EDAPPGVPEWVVTYGDMMSLLLTFFIMLVSMSEIRNDEGSVRAMLDSLRERFGTHQGTAA 65 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 +P S+ S + TK + G K +R+ Sbjct: 66 VPGKSLDPTSNQSKPASKGSSSDGGTKTGKEKSSGGGGPNKTVERINTG 114 >gi|77747768|ref|NP_636149.2| hypothetical protein XCC0758 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761295|ref|YP_244539.2| hypothetical protein XC_3475 [Xanthomonas campestris pv. campestris str. 8004] Length = 403 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 G +I++ D +FD + P+ VL + L + + +RGHTDA + Sbjct: 286 GYVITLSD---RILFDFDKADIRPDAARVLDTLAAALGKVSVAQMEVRGHTDA---KGGD 339 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334 N LS RA + L G ++ + G+ + + +P NRR+ Sbjct: 340 DYNQALSERRANAVLAALRTRGTAQS--ASAKGYGESQPLAPNTVKGQDNPGGRQLNRRV 397 Query: 335 DILVED 340 ++ + Sbjct: 398 ELFLRT 403 >gi|33863187|ref|NP_894747.1| outer membrane protein [Prochlorococcus marinus str. MIT 9313] gi|33635104|emb|CAE21090.1| Bacterial outer membrane protein [Prochlorococcus marinus str. MIT 9313] Length = 214 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 16/136 (11%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 ++ E + ILI + +FD + P I LQ + + + S+ + I GHT Sbjct: 84 NIVVEKEKE-ILIELAAD---VLFDFDKANLKPSAIKSLQGVAKRIRESSRGDVRIEGHT 139 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASD 325 D+ + N LS RA S + G + G + + A D Sbjct: 140 DS---KGSNEYNQTLSEKRAISVRDWFVSEGGLSNVQFATKGLGELKPVVSNTTEEGADD 196 Query: 326 P-MNSANRRIDILVED 340 P NRR++I+++ Sbjct: 197 PIGRQRNRRVEIIIKT 212 >gi|325105158|ref|YP_004274812.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324974006|gb|ADY52990.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 593 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D S P+ +L + +L + I + HTD+ R N RLS RA SA Sbjct: 482 YDFDKSDIRPDAARILDNLVNILKQNPSLRIELSSHTDS---RGSDAYNLRLSQKRAESA 538 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 + L+ G+ + R+ GF +L +D + NRR ++ V Sbjct: 539 VKYLVDRGIDKSRLVA-RGFGETKLLNKCANEVDCTDAEHEVNRRTEVKVL 588 >gi|28897538|ref|NP_797143.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633] gi|153839084|ref|ZP_01991751.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810] gi|260364598|ref|ZP_05777200.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030] gi|260878297|ref|ZP_05890652.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034] gi|260898127|ref|ZP_05906623.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466] gi|260901940|ref|ZP_05910335.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037] gi|28805750|dbj|BAC59027.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633] gi|149747422|gb|EDM58382.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810] gi|308086135|gb|EFO35830.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466] gi|308090168|gb|EFO39863.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034] gi|308106787|gb|EFO44327.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037] gi|308115125|gb|EFO52665.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030] Length = 319 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T FD +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 206 GTGSFDLNSTTLKPESASKLDNLVAFLNEHPQAKVEVVGYTDT---SGAAAYNQKVSEKR 262 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S L++ G+ RI + G + ++D NRR++I+V Sbjct: 263 AESVANALVEKGIDASRI-QARGEGENNPIASNDTREGRQQNRRVEIVV 310 >gi|328473467|gb|EGF44315.1| outer membrane protein OmpA [Vibrio parahaemolyticus 10329] Length = 319 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T FD +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 206 GTGSFDLNSTTLKPESASKLDNLVAFLNEHPQAKVEVVGYTDT---SGAAAYNQKVSEKR 262 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S L++ G+ RI + G + ++D NRR++I+V Sbjct: 263 AESVANALVEKGIDASRI-QARGEGENNPIASNDTREGRQQNRRVEIVV 310 >gi|4580967|gb|AAD24554.1|AF117962_1 OprF [Pseudomonas chlororaphis subsp. chlororaphis] Length = 325 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + ++ GHTD+ N +LS RA + Sbjct: 219 FDFDKSVVKPNSYADIKNLADFMKQNPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 275 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL GV R+ + G+ R A++ + NRR++ Sbjct: 276 KQVLTSQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 317 >gi|332666433|ref|YP_004449221.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335247|gb|AEE52348.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 958 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 T++G D K + SI D +F S LPE L + + + Sbjct: 826 TVAGSEDDIPTKNIKQFKIDENPDASIRD----VLFATGSYEILPEAHTYLIQWAKFIQR 881 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I I+GHTD + + N LS +RA + Q L+++ + + GF + + Sbjct: 882 NKLKIEIQGHTDNT---SSTEFNQVLSENRAQAVRQFLIENNCIAENL-STRGFGESKPE 937 Query: 322 --IASDPMNSANRRI 334 A++ + NRR+ Sbjct: 938 ASNATEEGRAKNRRV 952 >gi|256425882|ref|YP_003126535.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256040790|gb|ACU64334.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 630 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + + L ++ +L + I I GHTD +DN LS RA + Sbjct: 526 FFDTRQFALKTGSELELNRLVALLRENPTVTIEISGHTDNI---GNTKDNVLLSERRAQA 582 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 + L+ G++ +R+ + G+ + + + NRR ++ + Sbjct: 583 VVKYLVDKGIAAERL-QAKGYGETKPVADNMTAAGRAENRRTELKILT 629 >gi|146298022|ref|YP_001192613.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146152440|gb|ABQ03294.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 231 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 18/152 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ A++I L G + + +G+ + FD + S P Sbjct: 79 NKMDKQAREIDQALPGASVERVGEGIHLTLNENSVR-----------FDTNKSTLTPTAK 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ V + I I G+TD + N LS RA S L+ G+ R Sbjct: 128 ANLDKLVPVFNEYGDTDIQIFGYTDNT---GKPEYNLTLSGQRAASVQAYLVSKGLKSSR 184 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 K SG +D + NRR++ + Sbjct: 185 F-KTSGLGIADPIATNDTPEGRAQNRRVEFSI 215 >gi|37523008|ref|NP_926385.1| photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacter violaceus PCC 7421] gi|68052682|sp|Q7NFT5|PSAB_GLOVI RecName: Full=Photosystem I P700 chlorophyll a apoprotein A2; AltName: Full=PsaB gi|35214011|dbj|BAC91380.1| Photosystem I P700 chlorophyll A apoprotein A2 [Gloeobacter violaceus PCC 7421] Length = 872 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 16/148 (10%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA- 260 +S A ++ + G+++ + +FD S + L ++ V+ Sbjct: 726 AISAEQAKGVLSEFKAKPVPGGVMLLL---PENIVFDFDKSSVKLDADPALNRVVGVIQF 782 Query: 261 HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + +E + I GHTD+ N +LS +RA + K G+ +R++ G+ + Sbjct: 783 YGSEPVEILGHTDSL---GEDAYNQKLSEERASAVKAFFEKKGIEAERLTA-KGYGETKP 838 Query: 321 KIAS-------DP-MNSANRRIDILVED 340 + +P NRR++IL++ Sbjct: 839 VAPNAKPDGSDNPDGRQQNRRVEILIKT 866 >gi|146343548|ref|YP_001208596.1| putative outer membrane protein (ompA-like) [Bradyrhizobium sp. ORS278] gi|146196354|emb|CAL80381.1| conserved hypothetical protein; putative outer membrane protein (ompA-like) [Bradyrhizobium sp. ORS278] Length = 464 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S ++ +L ++ E+ + I GHTDA + N LS RA + Sbjct: 363 FETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTDAE---GDSAANQVLSQKRAQAV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L+K+G+ DR + I G+ + ++D NRRI+ +V Sbjct: 420 ADYLVKAGLPADRFTPI-GYGSTQPIASNDTAEGRTQNRRIEFVV 463 >gi|104780138|ref|YP_606636.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95109125|emb|CAK13822.1| putative outer membrane protein, OmpA family [Pseudomonas entomophila L48] Length = 239 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 13/215 (6%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 Q + +++ + K L + N Sbjct: 22 SPNPYDNQGQSQESTGMSKTAKYGGLGALAGAIAGAAIDHNNRGKGALIGAAAVGAAAAG 81 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 A K + L +A E R G I +I F S+ P Sbjct: 82 YGYYADKQEAELRAKMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANISPSFYSP 135 Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + + I + G TD++ + N LS RA + L GV R++ Sbjct: 136 LNNLANSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRVT 192 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + G + ++ + NRR+++ ++ G Sbjct: 193 -VRGMGPDQPIASNADANGRAQNRRVEVNLKPIPG 226 >gi|262368251|ref|ZP_06061580.1| inner membrane lipoprotein yiaD [Acinetobacter johnsonii SH046] gi|262315929|gb|EEY96967.1| inner membrane lipoprotein yiaD [Acinetobacter johnsonii SH046] Length = 254 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 17/181 (9%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI- 226 N +P L K + + +L KISS+ N+ + ++ R + Sbjct: 74 ESVANMVVPELKKVYQGKLSVRGTQMELNGKISSSNEVQPTTNLFQSLVTPPYRLNAQLS 133 Query: 227 ------SIIDQ--RNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 IID+ +N + F+ S++ +L ++ L + I GHTD+ Sbjct: 134 VNQAEQQIIDEALKNRIIEFESGSAVLAVSGTQILDEMAVALNKVGGKKVKIIGHTDS-- 191 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 N LS +RA + L+ ++ +R+ + G ++ + + NRRI Sbjct: 192 -SGDVAKNLALSKERAVAVKNYLINKSIAAERL-SVEGLGSNKPVADNATADGRKKNRRI 249 Query: 335 D 335 + Sbjct: 250 E 250 >gi|122879266|ref|YP_202154.6| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Xanthomonas oryzae pv. oryzae KACC10331] Length = 270 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 R + + Q E + K + + E N +S + + Sbjct: 65 RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 124 Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +R++ DL A S T++ + + + + T +I F SS Sbjct: 125 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 175 Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + +L ++ E ++ I GHTD N LS RA + +++ Sbjct: 176 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 232 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 G+ R++ + G + AS + NRRI ++ Sbjct: 233 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 270 >gi|325274366|ref|ZP_08140461.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] gi|324100500|gb|EGB98251.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] Length = 163 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 D +F ++ ++++IG+ L + + + GHTD+ A N LS Sbjct: 53 DLSGKVLFGSDLDSLNSQSQAIVERIGKALLGVGIQRVRVDGHTDS---SGKAAYNQELS 109 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA S + L+ G+ I G + + NRR+ I+V Sbjct: 110 ERRAQSVAKALVGVGMQPQNIQS-QGLGSSQPVADNRTSAGRTENRRVSIVV 160 >gi|226946149|ref|YP_002801222.1| OmpA family protein [Azotobacter vinelandii DJ] gi|226721076|gb|ACO80247.1| OmpA family protein [Azotobacter vinelandii DJ] Length = 222 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 11/210 (5%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +Q S + K L + + + Sbjct: 15 QTQDQNQAGQSGMSRTAKYGGLGALAGAAAGALIDHDNRGKGALIGAAVGGAAGAGYGYY 74 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A K + L +A G E R G I +I F S+ L + Sbjct: 75 ADKQEAQLRQQMA-----GTGVEVQRQGNDIKLI-MPGNITFATGSAEIASNFYTPLNDL 128 Query: 256 GEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKIS 313 I + GHTD++ + N LS RA S L+ GV+ R+ ++ + Sbjct: 129 ANSFKQYDQNSIEVIGHTDST---GSYQTNMSLSQRRAQSVANYLVAQGVNGARVTTRGA 185 Query: 314 GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G A++ S NRR++I + G Sbjct: 186 GPDSPVASNATESGRSQNRRVEINLRPLPG 215 >gi|302339083|ref|YP_003804289.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301636268|gb|ADK81695.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 384 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 74/192 (38%), Gaps = 12/192 (6%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK-KRLQDLAKKISSTLSGLVADNI 211 K + + ++ + + + EE + L + ++ R L + + S + Sbjct: 201 KERIIRRTVADDGTTSDEEGFRLIWYTGVDGASLNRMIADLSEGNTAVHEAGSDGSDRDD 260 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRG 270 +L E G+++++ + F + LP+ + L ++ VL+ + G Sbjct: 261 DTSILVEERSEGVVLTLPNIH----FKPDEAEILPQEVSRLDELARVLSQIRDTSFLVVG 316 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328 HT + + LS+DRA L + G+ E R G + ++D Sbjct: 317 HTADVGTKESQK---ELSVDRARRIISELSQRGLDESRFL-YDGVGGTQPVASNDNEEGR 372 Query: 329 SANRRIDILVED 340 NRR++I + + Sbjct: 373 KKNRRVEIFLLE 384 >gi|260061787|ref|YP_003194867.1| outer membrane protein-like peptidoglycan-associated (lipo)protein [Robiginitalea biformata HTCC2501] gi|88785919|gb|EAR17088.1| Outer membrane protein-like peptidoglycan-associated (lipo)protein [Robiginitalea biformata HTCC2501] Length = 453 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD S+ P ++ V+++I +VL + + I GHTD+ A N LS R Sbjct: 347 NAILFDSGSANLQPRSMGVIRQISQVLQQDGGMSLQIVGHTDS---DGDADANVALSQAR 403 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 A + + L+ GV R+S + G ++ + NRR++ + Sbjct: 404 AEAVKKALVDVYGVDAGRLSTL-GKGESEPVSDNNSPAGKAQNRRVEFI 451 >gi|262376393|ref|ZP_06069622.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308532|gb|EEY89666.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 255 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 8/147 (5%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKI 255 + + GL+ +N + I +N + F+ S++ I +L ++ Sbjct: 113 QDTTEKFKGLIPENYRLNAQLSVNQAEQRIIDAALKNRIIEFESGSAVLATSGIQILDEM 172 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L + I I GHTD+ N LS RA + L+ V + G Sbjct: 173 VSALNKVSGKKIRIIGHTDS---SGDINKNLMLSQQRAEAVKSYLIAKNV-PTHLLSTKG 228 Query: 315 FAHHRLKIASDPMNS--ANRRIDILVE 339 + + + NRRI+ V Sbjct: 229 SGSSKPVADNATADGRKRNRRIEFEVL 255 >gi|114327023|ref|YP_744180.1| outer membrane protein A [Granulibacter bethesdensis CGDNIH1] gi|114315197|gb|ABI61257.1| outer membrane protein A [Granulibacter bethesdensis CGDNIH1] Length = 361 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + ++ + I + G+TD + N RLS+ RA S Sbjct: 259 FFDWDRADLTARAREIVAEAARASTQVQATRIEVNGYTDK---SGTPQYNQRLSVRRAQS 315 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+K GV + I I GF + + NRR++I++ Sbjct: 316 VAAELVKDGVPRNVIF-IHGFGETHPLVPTAQGVREPQNRRVEIIL 360 >gi|218259786|ref|ZP_03475375.1| hypothetical protein PRABACTJOHN_01034 [Parabacteroides johnsonii DSM 18315] gi|218224914|gb|EEC97564.1| hypothetical protein PRABACTJOHN_01034 [Parabacteroides johnsonii DSM 18315] Length = 227 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ +TL + + ++ + +F +SS + Sbjct: 72 KKMDKQKKELEATLPEETTVETINN------GEALKVTF---DSGILFATNSSTVSAASK 122 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSED 307 L+ + L + + I I GHTD + N LS RA S + L GVS Sbjct: 123 SALRDLAASLNANPDTDIKIIGHTDNT---GKVDYNQTLSEKRAKSVFDYLMEDQGVSSK 179 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R++ G H + + NRR++IL+ Sbjct: 180 RMT-YEGKGVHEPVADNSTPEGRALNRRVEILILP 213 >gi|87311740|ref|ZP_01093855.1| probable outer membrane protein A (OmpA) [Blastopirellula marina DSM 3645] gi|87285524|gb|EAQ77443.1| probable outer membrane protein A (OmpA) [Blastopirellula marina DSM 3645] Length = 265 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 24/213 (11%) Query: 135 SNSQQSEHCKNSL----TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 QQS+ ++ + + + G+ L ++ S +E L + + Sbjct: 61 QTQQQSKILQDEVGLLKKQLRDAGEQLTQAQQQIASAKQENTTLLASTRQRGGATITPNN 120 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 LQ +I + G I I I + +F ++ Sbjct: 121 SLQQSVSQIQ-----------ISGAQVRVDGDLIRIEIPADQ---IFMTGTNTLHQNAYG 166 Query: 251 VLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSED 307 L ++ + +I + GHTD +LS A + + L+ G V + Sbjct: 167 TLDQVANAIRQQFPRNLIGVEGHTDNQAASPPFASQHQLSASMAQATFDQLVARGQVPPN 226 Query: 308 RISKISGFAHHRLKIASDPMN--SANRRIDILV 338 R+ + G + +++ + NRRIDI++ Sbjct: 227 RLF-VVGHGGNHPVVSNATPAGQARNRRIDIVI 258 >gi|27376195|ref|NP_767724.1| hypothetical protein blr1084 [Bradyrhizobium japonicum USDA 110] gi|27349334|dbj|BAC46349.1| blr1084 [Bradyrhizobium japonicum USDA 110] Length = 464 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P++ +L + E L T I + GHTDA N LS RA + Sbjct: 363 FATKRADIDPDSAGILDHLIETALRCPTTNIDVAGHTDAD---GEDAFNQALSEKRAQAV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 L+K+G+ R + I G+ + +D + + NRRI+ LV Sbjct: 420 IDYLVKAGLPASRFTAI-GYGSTQPVAGNDTDDGKAQNRRIEFLV 463 >gi|329888176|ref|ZP_08266774.1| ompA family protein [Brevundimonas diminuta ATCC 11568] gi|328846732|gb|EGF96294.1| ompA family protein [Brevundimonas diminuta ATCC 11568] Length = 330 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + L + + + ++L +S+ GHTD + N LS +RA + Sbjct: 228 FALDKADILDASRPQIDAMAQMLKDEAGLRLSVEGHTDNT---GAPARNRPLSEERARAV 284 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L + G+ R+ GF + ASD + NRR++++ Sbjct: 285 VAALTQQGIDAKRLEA-KGFGADKPVADNASDEGRARNRRVELV 327 >gi|305666954|ref|YP_003863241.1| OmpA family protein [Maribacter sp. HTCC2170] gi|88709183|gb|EAR01417.1| OmpA family protein [Maribacter sp. HTCC2170] Length = 217 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 19/152 (12%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETI 249 R+ A++I + G E TR G I++ + FD S S + Sbjct: 65 RMDRQAERIEEEIPGA-----------EVTRVGEGINVTFNEEAGVYFDTSKSNVKGTSA 113 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ + + I GHTD+ N +LS RA S L+ G+ +R Sbjct: 114 TTLDKLAGIFKEYPNSDVLIEGHTDS---AGPDDYNMKLSQQRAESVTNYLISKGIEANR 170 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + ++ K ++ + NRR+++ + Sbjct: 171 F-STKWYGENQPKADNETTEGKAKNRRVELAI 201 >gi|298372894|ref|ZP_06982884.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275798|gb|EFI17349.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 587 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 17/239 (7%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 K +K+ + E + + S + E + + L S Sbjct: 356 KTPSVKHDIYMQKKESAKPTEYTVMGKVMDEDSGKTIGNAVVTVENNTNGTEQNYLTNSF 415 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 E + L I A + + K T + + + + I Sbjct: 416 G-EYSVALKAYETYTISATAPECLPSEGKKFKKDTYDPSKTSTVENNIYLKRVKKNEAIR 474 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 + + +D + + P+ L ++ + L + + + + HTD+ R N R Sbjct: 475 L----DNVHYDLNKATIRPDARPELDRLVKYLKDNPKIRVEMSSHTDS---RGSDAYNQR 527 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 LS RA + L++ G++ RI + G+ +L ++ + NRR ++ V Sbjct: 528 LSQQRADAVKLYLVEKGIAPSRIKSV-GYGETKLLNNCGNGSNCTEEQHQLNRRTEMKV 585 >gi|153833086|ref|ZP_01985753.1| outer membrane protein [Vibrio harveyi HY01] gi|148870654|gb|EDL69561.1| outer membrane protein [Vibrio harveyi HY01] Length = 208 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F SS P + + + + L I ++G+T N LS RA Sbjct: 85 RVLFANDSSAIDPVFVNQISDLSDFLKEYPTTSIELQGYTS---ITGTDEYNLALSKRRA 141 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S Q L+ +G+S +R+ +I GF L + ++ NRR+ V +G Sbjct: 142 ESVRQELINNGISPERL-RIVGFGETNLASQGTDETSHALNRRVTATVVGYKG 193 >gi|167032610|ref|YP_001667841.1| OmpF family protein [Pseudomonas putida GB-1] gi|166859098|gb|ABY97505.1| OmpF family protein [Pseudomonas putida GB-1] Length = 344 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A++ + NRR++ Sbjct: 295 KQVLTQQYGVESSRVDSV-GYGETRPVADNATEEGRAINRRVE 336 >gi|4580972|gb|AAD24559.1|AF117967_1 OprF [Pseudomonas putida] Length = 338 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A++ + NRR++ Sbjct: 295 KQVLTQQYGVESTRVDSV-GYGETRPVADNATEEGRAVNRRVE 336 >gi|58427732|gb|AAW76769.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Xanthomonas oryzae pv. oryzae KACC10331] Length = 272 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 R + + Q E + K + + E N +S + + Sbjct: 67 RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 126 Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +R++ DL A S T++ + + + + T +I F SS Sbjct: 127 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 177 Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + +L ++ E ++ I GHTD N LS RA + +++ Sbjct: 178 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 234 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 G+ R++ + G + AS + NRRI ++ Sbjct: 235 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 272 >gi|325928737|ref|ZP_08189907.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas perforans 91-118] gi|325540905|gb|EGD12477.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas perforans 91-118] Length = 229 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G IS+ + FD S P+ L + L + ++ + GHT Sbjct: 92 NTGIEVQRQGDNISLN-LPDGITFDFGKSALKPQFYTALNGVASTLREYNQTMVEVVGHT 150 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 151 DSV---GSDAVNQRLSEERASAVAQYLTAQGVQRERMETMGAGKRYPIADNTTDAGRAKN 207 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 208 RRVEIRLIPLRA 219 >gi|312884493|ref|ZP_07744197.1| putative lipoprotein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367805|gb|EFP95353.1| putative lipoprotein [Vibrio caribbenthicus ATCC BAA-2122] Length = 222 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 11/147 (7%) Query: 200 SSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + L + + GV E T + + + N F SS L+ + + Sbjct: 83 DQQEAALRKELLNSGVQVERTGENQLRLRM---ENGIGFSSGSSTLDNSIHKTLRGVARI 139 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L E + I G+TD++ R N LS RA S L+ GV+ R G Sbjct: 140 LVEYPETSLVIEGNTDST---GSDRTNQILSEKRAESVRGYLVGQGVAPGRAVS-RGLGE 195 Query: 318 HRLK--IASDPMNSANRRIDILVEDRQ 342 + ++ + NRR++I + + Sbjct: 196 RQPICTNSTKEGRACNRRVEIKILPLK 222 >gi|294649621|ref|ZP_06727038.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194] gi|292824498|gb|EFF83284.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194] Length = 217 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + KK+ + G GV G + I+ + FD + S P Sbjct: 77 LDNKEKKLRQQMQGT-------GVDVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ +VL + I + G+TD + N LS RA S L G++ +RI Sbjct: 128 LNKVAQVLGEDNQSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLAGKGIASNRID 184 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ + NRR++I + +Q Sbjct: 185 A-QGYGSSNPIADNSTAAGREQNRRVEISIYAKQ 217 >gi|170724980|ref|YP_001759006.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810327|gb|ACA84911.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 229 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 17/214 (7%) Query: 128 ENNIFYLSNSQQSEHCKNSLTRD-SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + Q SE + L S KG +L ++ + + + ++ Sbjct: 24 QEMVSEPMQPQASEQGQYELASFCSAKGYNLSQNVTISDVAGIANHRDGYLMIRQDSDQA 83 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-TRTGILISIIDQRNTPMFDKSSSIPL 245 + K L LAK + +S + + L E + G+L FD S Sbjct: 84 EIKTALLKLAK--NQDVSINCMEYLSSNGLVEFGSGEGLL-------ARVYFDFDSKSLT 134 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 PE+ ++L K+ + L + EVI + GHTD N+ L L RA +A L K GV Sbjct: 135 PESRLILDKVAKRLVQAPEVIKLVGHTDN---SGSEEYNYSLGLLRADNAQTYLNKQGVR 191 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 + ++ S R +++ + NRR+++L Sbjct: 192 DTQLKSES-QGETRPIASNENLDGRALNRRVELL 224 >gi|326796261|ref|YP_004314081.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326547025|gb|ADZ92245.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 213 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ P+ L ++G+ L + I+ I GHTD N LS RA S Sbjct: 81 FETGKYNLKPKYYPGLVELGKFLQKNPNTIAIITGHTDDI---GDEESNEILSQRRAQSI 137 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + L K + +RI + G+ R ++ NRR+ V + Sbjct: 138 AKALSEKFKIDIERIVAL-GYGESRPMYPNETDVERRKNRRVQASVVSK 185 >gi|188575566|ref|YP_001912495.1| OmpA family domain protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520018|gb|ACD57963.1| OmpA family domain protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 268 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 R + + Q E + K + + E N +S + + Sbjct: 63 RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 122 Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +R++ DL A S T++ + + + + T +I F SS Sbjct: 123 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 173 Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + +L ++ E ++ I GHTD N LS RA + +++ Sbjct: 174 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 230 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 G+ R++ + G + AS + NRRI ++ Sbjct: 231 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 268 >gi|157889021|dbj|BAF80966.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 188 RKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K++++ K+I T S ++ + E T I++ F + Sbjct: 183 ETKQIEEKPQVKQIDKTCSEPRKGALLDHIGCEKT-----IAL-----EGHFGFDQTNIN 232 Query: 246 PETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE +Q++G++L + + +I GHTD++ N +LSL+RA + + L K+GV Sbjct: 233 PEFAQKIQEVGKILEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVAKELEKTGV 289 Query: 305 SEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++++I G+ + K ++D + NRR++ Sbjct: 290 AKEKIV-TKGYGFEKPKASNDTKEGRAQNRRVE 321 >gi|88860858|ref|ZP_01135494.1| putative lipoprotein [Pseudoalteromonas tunicata D2] gi|88817071|gb|EAR26890.1| putative lipoprotein [Pseudoalteromonas tunicata D2] Length = 214 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 8/130 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS 275 E R G + ++ + F S L I +V+ + +SI GHTD++ Sbjct: 90 VEVVREGDNLRLV-MPSNITFATDQSYISTGFHDTLDAIAKVMNKYEKTFLSIEGHTDST 148 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N LS RA S L+ + + RI G+ R +++ + NRR Sbjct: 149 ---GKTEYNQNLSEQRALSVKNYLLNKQILDVRI-STQGWGESRPIASNETSSGRALNRR 204 Query: 334 IDILVEDRQG 343 ++I + + Sbjct: 205 VEIQIVPNKA 214 >gi|325286811|ref|YP_004262601.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322265|gb|ADY29730.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 643 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 19/191 (9%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL---AKKISSTLSGLVADNIVKGVLF 217 +LE + + +P K I+A K+K L A+++ + + + + Sbjct: 456 KELESAEDGSYEIEVPWQEKITIIASKKKYSLFRQFYTAEELKNKKQTPIYLDFADDFVV 515 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 E +L + N +F SS P+ I L K ++ E + I HTD+ Sbjct: 516 EKEGKSML-----KLNKFIFKTKSSKLTPDIIKELDKAITIIKKFPEFNLQIESHTDS-- 568 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNS 329 + + N+R+S RA + + L+ +G+ I G+ + D ++ Sbjct: 569 -KGGSSSNFRISQARADNIKKYLLNNGIPSKNILYTIGYGEDHVLNKCVNGVYCIDYFHA 627 Query: 330 ANRRIDILVED 340 NRR +I+V + Sbjct: 628 ENRRCNIVVLN 638 >gi|325274538|ref|ZP_08140599.1| OmpF family protein [Pseudomonas sp. TJI-51] gi|324100318|gb|EGB98103.1| OmpF family protein [Pseudomonas sp. TJI-51] Length = 345 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 239 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 295 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A++ + NRR++ Sbjct: 296 KQVLTQQYGVESSRVDSV-GYGETRPVADNATEEGRAINRRVE 337 >gi|307729050|ref|YP_003906274.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307583585|gb|ADN56983.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 168 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N G+ G+ + + +FD + S + V+ + +L S + I + Sbjct: 33 NKAVGIEVAPVTDGVAVKL---PEKALFDFNKSDVRSDASGVIDRSAVLLKRSKKPIIVE 89 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 G+TD + N +LS RA + L+ GV+ DRI + G A++ ++D Sbjct: 90 GYTDN--VGTLEY-NQQLSEARAVAVGYALVARGVAMDRI-RTKGNAYNNPVASNDTPEG 145 Query: 328 NSANRRIDILV 338 + NRR +I+V Sbjct: 146 RALNRRTEIVV 156 >gi|254292013|ref|ZP_04962792.1| lipoprotein, putative [Vibrio cholerae AM-19226] gi|150422090|gb|EDN14058.1| lipoprotein, putative [Vibrio cholerae AM-19226] Length = 223 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + L + D+ V+ V + + + N F +S L+ + Sbjct: 85 QQEAELRKALMDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 139 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L + + I GHTD++ N LS RA S L+ GV+E R G Sbjct: 140 ILVEYPDTSLVIEGHTDST---GSDSTNQVLSEKRAESVRSFLLSQGVAEGRAIA-RGNG 195 Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342 +++ NRR++I + + Sbjct: 196 ERFPLCSNNTAEGRACNRRVEIQILPLK 223 >gi|91975364|ref|YP_568023.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91681820|gb|ABE38122.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 464 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 103/288 (35%), Gaps = 17/288 (5%) Query: 56 ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 A D ++AI + A D + PP NK ++ +T D + Sbjct: 188 ARDLGGREAIAAALRNLPEGYSVAEN---DIKAPPYVFQANKDPVASTLTLTGYVPDNAV 244 Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 + Q+ + + + L + + ++ E Sbjct: 245 HAALADTAGQKFFSEKVVDNLKASIGAPQGFANAVKPALGALSRLSTGTLIVSDREVRLS 304 Query: 176 PPLSKEKILAMKRKKRLQDLAK--KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 E ++ R + +D+ + + + LS A + V + + +L ++ Sbjct: 305 GDALFEAAVSQIRAELNKDMPQGWTVKADLSVKPAASPVDATVCQQLFNDLL-----GKS 359 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 T FD +S+ ++ +L ++ E I + GHTD+ A N LS RA Sbjct: 360 TVRFDSASASIDKDSAGLLDRLIETAMRCPGAAIEVAGHTDS---AGEAGSNQALSERRA 416 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + ++++G+S +R + G+ +D + NRRID ++ Sbjct: 417 RAVVDYMVRAGLSPERF-RAFGYGSKIPLEGNETDAGKAKNRRIDFMI 463 >gi|134292200|ref|YP_001115936.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134135357|gb|ABO56471.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 224 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 7/115 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 ++ +F + P L K+ T +++ G+TD+ N L Sbjct: 114 VNLAGDALFATGQATLTPAARASLDKLLSEREDHTYTEVTVTGYTDS---AGSDAANLAL 170 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 S RA + L G+ + ++G A+ +ANRR++I ++ Sbjct: 171 SKRRADVVARYLHAHGLKAHTM-AVAGRGSADPVGSNATAEGRAANRRVEISLKR 224 >gi|26988814|ref|NP_744239.1| OmpF family protein [Pseudomonas putida KT2440] gi|148548857|ref|YP_001268959.1| OmpF family protein [Pseudomonas putida F1] gi|24983615|gb|AAN67703.1|AE016401_6 outer membrane protein OprF [Pseudomonas putida KT2440] gi|148512915|gb|ABQ79775.1| OmpF family protein [Pseudomonas putida F1] gi|313499790|gb|ADR61156.1| OprF [Pseudomonas putida BIRD-1] Length = 344 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A++ + NRR++ Sbjct: 295 KQVLTQQYGVESSRVDSV-GYGETRPVADNATEEGRAVNRRVE 336 >gi|221200257|ref|ZP_03573299.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221205937|ref|ZP_03578951.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221173949|gb|EEE06382.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221179598|gb|EEE12003.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 220 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + + +F + P L K+ + +S+ G+TD+ N Sbjct: 107 VEHVSLSGDALFASGLATLTPAARASLDKLLNAYGDRSYTQVSVTGYTDSV---GSDASN 163 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L + G+ R ++G ++ + NRR++I ++ Sbjct: 164 LALSKRRAEAVAAYLQQRGLQA-RSLTVTGRGSADPIASNATAEGRATNRRVEISLQR 220 >gi|163786090|ref|ZP_02180538.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] gi|159877950|gb|EDP72006.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] Length = 627 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 + ++ + I + FD + P+ L + +L I + Sbjct: 501 AEEIVTDDEDGNTYIEL----ENIYFDFAKWDIKPQAARTLDILVALLKKYPRMEIQLGA 556 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SD 325 HTD+ R N LS RA + + L+++G+S R++ G+ + + ++ Sbjct: 557 HTDS---RAGFEFNMDLSHKRAKATLEYLVENGISRARLTS-KGYGETQPLVPCGDNCTE 612 Query: 326 PMNSANRRIDILVE 339 S NRR + L+ Sbjct: 613 TEFSINRRCEFLIL 626 >gi|312884285|ref|ZP_07743994.1| hypothetical protein VIBC2010_10946 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368058|gb|EFP95601.1| hypothetical protein VIBC2010_10946 [Vibrio caribbenthicus ATCC BAA-2122] Length = 125 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 ++ + F+ S L + L ++I G+TD+ A N +LS Sbjct: 13 EEYGSGTFEFDSCKLTQSVAERLDNLANFLNEYPTSRVAITGYTDS---SGPAAYNLKLS 69 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 RA + L+ +G+ E R++ +G + + NRR+++++ Sbjct: 70 EMRAQAVKDYLISAGIEEARLTA-TGLGENNPVADNCTHEGREKNRRVEVVI 120 >gi|110639367|ref|YP_679576.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110282048|gb|ABG60234.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 712 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS LPE L K+ + L + + I GHTD A N RLS RA + Sbjct: 589 FDNNSSKILPEMEGDLDKVVDFLVDHPQIKLVISGHTDG---SGDAAANLRLSQARADAI 645 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRID 335 ++ K + E RI + G+ + + I S+ NRR++ Sbjct: 646 KSYIMEKGNIDESRIEAV-GYGNQKPIIQQEVSESDRKINRRVE 688 >gi|21111774|gb|AAM40073.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575109|gb|AAY50519.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 431 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 G +I++ D +FD + P+ VL + L + + +RGHTDA + Sbjct: 314 GYVITLSD---RILFDFDKADIRPDAARVLDTLAAALGKVSVAQMEVRGHTDA---KGGD 367 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334 N LS RA + L G ++ + G+ + + +P NRR+ Sbjct: 368 DYNQALSERRANAVLAALRTRGTAQS--ASAKGYGESQPLAPNTVKGQDNPGGRQLNRRV 425 Query: 335 DILVED 340 ++ + Sbjct: 426 ELFLRT 431 >gi|317178824|dbj|BAJ56612.1| flagellar motor protein MotB [Helicobacter pylori F30] Length = 255 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD P + + ++ L+ +RAY +VL++ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDMPLTKTRFKSHYELAANRAYRVMKVLIQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|300310091|ref|YP_003774183.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Herbaspirillum seropedicae SmR1] gi|300072876|gb|ADJ62275.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Herbaspirillum seropedicae SmR1] Length = 271 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 10/154 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 + + + Q +A ++S+L+ N G+ T+ G+L + + R F+ + Sbjct: 120 EVANEAQRQQIASDMASSLNSSYTVN--NGLRVSTSEQGLLDNALANRVVS-FESGQATL 176 Query: 245 LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 PE +L +I + + I G+TD + N LSL RA + L G Sbjct: 177 TPEGKRILDEIAATMLKLKGRHVEIIGNTDNE---GLRASNISLSLARADAVKAYLGAKG 233 Query: 304 VSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 V E + SG R ++ + NRRI+ Sbjct: 234 VDES-LLSTSGQGPDRPVASNATAEGRAKNRRIE 266 >gi|89902522|ref|YP_524993.1| Type I secretion outer membrane protein TolC [Rhodoferax ferrireducens T118] gi|89347259|gb|ABD71462.1| Type I secretion outer membrane protein, TolC [Rhodoferax ferrireducens T118] Length = 609 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD S E + L + + + I GHTD+ + +N RLSL RA S Sbjct: 500 LFDSGKSNLKAEGLRSLDSLLARIKGVQLDVVIAVGHTDS--VGSEEFNN-RLSLARAES 556 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L+ GV R+ + G + A++ ++ NRR+D+ Sbjct: 557 VRAYLVGKGVDVKRVRAV-GKGESQPIADNATEAGHAKNRRVDV 599 >gi|237747505|ref|ZP_04577985.1| outer membrane protein A [Oxalobacter formigenes HOxBLS] gi|229378856|gb|EEO28947.1| outer membrane protein A [Oxalobacter formigenes HOxBLS] Length = 207 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD SI PE L ++ L+ + + GHTD + N +LS RA + Sbjct: 98 FFDFDKSIVKPEGKAKLDELVNALSGLDTEVIVAVGHTD---WIGTDAYNQKLSERRANA 154 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L+ GV ++I G + + + NRR+++ V +G Sbjct: 155 VKAYLVSKGVPAEKIF-TEGKGKKQPIADNKTRQGRAKNRRVEVEVVANRG 204 >gi|145301089|ref|YP_001143930.1| outer membrane lipoprotein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853861|gb|ABO92182.1| outer membrane lipoprotein [Aeromonas salmonicida subsp. salmonicida A449] Length = 218 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR G + I++ N FD SS+ L + V+A Sbjct: 81 VQEAKLREKLQGTGVSVTRNGDEL-ILNMPNNVTFDSSSAQLKAAGANTLSGVAMVVAEF 139 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ GHTD++ R++ N +LS RA + L+ GV+ RI G + Sbjct: 140 DKTRLNVVGHTDSTGSRDL---NMKLSAQRADAVAAQLIGHGVTGSRI-STQGVGPDQPV 195 Query: 322 IASDPMN--SANRRIDILVED 340 + + NRR+ I + Sbjct: 196 ATNSTAAGKAQNRRVTITLIP 216 >gi|84501675|ref|ZP_00999847.1| OmpA family protein [Oceanicola batsensis HTCC2597] gi|84390296|gb|EAQ02855.1| OmpA family protein [Oceanicola batsensis HTCC2597] Length = 222 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ +L + + + + GHTD + N+RL L RA + Sbjct: 79 FAFNSAALDATARQILARQAHWIRQFPEVRLRVYGHTD---LVGSSSYNYRLGLRRAQAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ + + + + NRR Sbjct: 136 VHFLVAQGISRSRLEAVVSKGETQPLVVTQGRERRNRR 173 >gi|253701505|ref|YP_003022694.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251776355|gb|ACT18936.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 466 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +I PE + ++G + I GHTD N LS RA + Sbjct: 235 FDIDKAIIRPEYKEEIAQVGNFMKKYPTTTAVIEGHTDNV---GSYNHNQDLSQRRAEAV 291 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L++ G+ R+S G+ R A+D NRRI+ +++ Sbjct: 292 VNHLVEQYGIERSRLSA-KGYGFTRPIADNATDEGKQKNRRIEAIID 337 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + + K+ + + +T I GHTD + N +LS RA + Sbjct: 359 FDPGKAEVKQQYRNEIAKVADYMKRYNTTTAVIEGHTDNT---GSPEKNMKLSQQRAQNV 415 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM-NSANRRIDILVE 339 L+ + G+ R+S A R+ + P NRRI+ +++ Sbjct: 416 VNHLVDNFGIERSRLSAKGYGATRRISYNNTPEGRQKNRRINAVID 461 >gi|152996565|ref|YP_001341400.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150837489|gb|ABR71465.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 209 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + L+ + + L + I GHTD+ A N LS RA + Sbjct: 79 LFDTGKADIKQRFYSELKDLAKFLKEHPASTVVIEGHTDSQ---GSAELNQELSQQRASA 135 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 VL+ S + DR+ I G+ R +D + NRR+ V +Q Sbjct: 136 IADVLVDSFRIQADRVKGI-GYGATRPIADNDTEDGRKLNRRVVAEVFAKQ 185 >gi|146301711|ref|YP_001196302.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156129|gb|ABQ06983.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 642 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDA 274 L E + I I FD S + + L K+ +++ VI I HTD+ Sbjct: 516 LIERKDGLLKIKI----GIIFFDLDKSDVRYDAAIELNKVVLLMSQYPSVVIKIESHTDS 571 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPM 327 N N LS RA + ++ G++ +RI G+ +L ++ Sbjct: 572 R--ANDQY-NLELSDRRAKATRDYIISQGIAPERIESAIGYGETQLINNCSNGVPCTEAQ 628 Query: 328 NSANRRIDILV 338 + NRR + ++ Sbjct: 629 HQMNRRSEFII 639 >gi|242279927|ref|YP_002992056.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242122821|gb|ACS80517.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 240 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 V + + I + R F +I +T L ++ EVL S I I GHTDA Sbjct: 109 VSMKEEDGELKIVM---RGNAFFAPGQNIFEDKTRQYLAEVAEVLKTSKHAIHIIGHTDA 165 Query: 275 S-PFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSA-- 330 S + A++++ LS RA + L+ + + RI +SG ++ D Sbjct: 166 SDAAKVGAQNSFELSARRAAKVAEFLINTKSIDPVRII-VSGRGGVAPELPDDMGKVEGN 224 Query: 331 NRRIDILVED 340 NRR++I+V + Sbjct: 225 NRRVEIVVIN 234 Score = 41.0 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 63/203 (31%), Gaps = 10/203 (4%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS 80 + D + + W + ++D M V+ F+V++I + + ++ K E N + M + Sbjct: 16 KSGDADTSGMNGWAVPWSDLMMVMFVLFVVLFIYSQSKENIKVIFEG--NAQSEVAMNPA 73 Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G+ + + + + + + D S ++ ++ Q Sbjct: 74 DGLIEMISFHRDAMSSSARVIMTPEDVLYRSDDGAVSMKEEDGELKIVMRGNAFFAPGQ- 132 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 +K + +K + + + + + A++ + Sbjct: 133 -------NIFEDKTRQYLAEVAEVLKTSKHAIHIIGHTDASDAAKVGAQNSFELSARRAA 185 Query: 201 STLSGLVADNIVKGVLFETTRTG 223 L+ + V + G Sbjct: 186 KVAEFLINTKSIDPVRIIVSGRG 208 >gi|84624974|ref|YP_452346.1| putative lipoprotein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368914|dbj|BAE70072.1| putative lipoprotein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 266 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 18/219 (8%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 R + + Q E + K + + E N +S + + Sbjct: 61 RDTYGSARIVDRVQVESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNE 120 Query: 186 MKRKKRLQDL--AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 +R++ DL A S T++ + + + + T +I F SS Sbjct: 121 AQRQQVASDLSLASNTSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSR 171 Query: 244 PLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + +L ++ E ++ I GHTD N LS RA + +++ Sbjct: 172 LTPLGMRILDEMVEKMSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQK 228 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 G+ R++ + G + AS + NRRI ++ Sbjct: 229 GIDGARMN-VQGKGPDQPVADNASPDGRARNRRIQFKIQ 266 >gi|107023374|ref|YP_621701.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116690456|ref|YP_836079.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|170733777|ref|YP_001765724.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|254247501|ref|ZP_04940822.1| Outer membrane porin F [Burkholderia cenocepacia PC184] gi|105893563|gb|ABF76728.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116648545|gb|ABK09186.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] gi|124872277|gb|EAY63993.1| Outer membrane porin F [Burkholderia cenocepacia PC184] gi|169817019|gb|ACA91602.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 215 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + SI G+TD++ + N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDST---GSQQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALVQRGVNGGRLSA-QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQ 212 >gi|325066515|ref|ZP_08125188.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Actinomyces oris K20] Length = 359 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIA 281 G +I++ D +FD SS E L + VL S + ++GHTD+ + Sbjct: 240 GTVITLEDS---VLFDFGSSDLRGEASTTLTNLATVLKDSKAPKVQVQGHTDSV---SDD 293 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRR 333 N +LS RA + L +G + D + G+ + + +P NRR Sbjct: 294 AFNQKLSEQRAQAVSSALKSNGATAD--LEAVGYGETKPVAPNENPDGSDNPGGRRLNRR 351 Query: 334 IDILV 338 +++ V Sbjct: 352 VEVFV 356 >gi|269964170|ref|ZP_06178467.1| outer membrane protein, putative [Vibrio harveyi 1DA3] gi|269831125|gb|EEZ85287.1| outer membrane protein, putative [Vibrio harveyi 1DA3] Length = 205 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P + ++ L I I+G+ AS A N LS RA + Sbjct: 83 LFANDSDSINPVFQRKITELAAFLKKYPATSIEIQGY--ASKVGTAAY-NLELSRRRASN 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQG 343 +L+K G+SE R++ I GF L D ++ NRR+ V +G Sbjct: 140 VRNLLIKQGISEKRLT-IVGFGDTHLVQLGTDDVSHALNRRVTATVIGHKG 189 >gi|332664439|ref|YP_004447227.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333253|gb|AEE50354.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 228 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 + +++ K E IL++ + MFD S T L K E + + Sbjct: 86 LKEDLGKSAEVERVGESILVTF---DSGIMFDVDSYALKAATRANLDKAAETMKEYDKTE 142 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I + GHTDA+ N +LS +RA + L ++GV+ R++K GF + ++ Sbjct: 143 IIVMGHTDAT---GSDEYNQKLSENRAAAVSSFLQQNGVTASRLTK-KGFGEQKPVASNT 198 Query: 326 PMNSA--NRRIDILVEDRQG 343 ++ NRR++I + + Sbjct: 199 SVSGREQNRRVEIAIVASKA 218 >gi|325068011|ref|ZP_08126684.1| OmpA/MotB domain protein [Actinomyces oris K20] Length = 499 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ LQ + LA +SI GHTD ++ A N LS RA + Sbjct: 211 FASDSADLASGAEAQLQTVAGQLAQYPNGGTLSIVGHTDD--VQDDAY-NQTLSEKRANA 267 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L + + + +SG + KI D + NRR++I Sbjct: 268 VKTRLEQLTKLDKWQTSVSGKGESQPKINDTTDEARAVNRRVEI 311 >gi|296272285|ref|YP_003654916.1| OmpA/MotB domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096460|gb|ADG92410.1| OmpA/MotB domain protein [Arcobacter nitrofigilis DSM 7299] Length = 343 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SSI + +++ E L + +I GHTD + + N LS RA SA Sbjct: 241 FPIDSSIIDEKYKHRIKEFAEFLNKHPKLKATIEGHTD---YTGTKKYNLWLSKRRANSA 297 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++ L K V R+ I G+ R + + NRRI+ Sbjct: 298 FEALKKYDVDPARLKTI-GYGETRPIATNKTKEGRAKNRRIE 338 >gi|213028311|ref|ZP_03342758.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 111 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS+ P L + VL + +++ G+TD++ ++ N RLS RA S Sbjct: 7 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL---NMRLSQQRADSV 63 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 L+ GV RI + SG ++ + NRR++I + Q Sbjct: 64 ASSLITQGVDASRI-RTSGMGPANPIASNSTAEGKAQNRRVEITLSPLQ 111 >gi|269964125|ref|ZP_06178424.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831140|gb|EEZ85300.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 197 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + +F SS P + + + L I ++G+T N L Sbjct: 69 QEMQIRVLFANDSSEIDPVFAKQISDLSDFLKEYPTTSIELQGYTS---ITGTDEYNLAL 125 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S RA S Q L+ +G+S DR+ +I GF L + ++ NRR+ V +G Sbjct: 126 SKRRAESVRQELINNGISPDRL-RIVGFGETNLASTGTDETSHALNRRVTATVVGYKG 182 >gi|259417968|ref|ZP_05741887.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259346874|gb|EEW58688.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 207 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ VL + + + GHTDA N RL L RA +A Sbjct: 66 FDFDSARLDGNARQVLDAQADWIRQFPEVRFRVYGHTDAV---GSQSYNKRLGLRRARAA 122 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G++ +R+ ++ F + + +D NRR Sbjct: 123 VNYLVARGIARNRLEAVASFGETQPLVLTDQRERRNRR 160 >gi|60650175|ref|YP_209728.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|255010962|ref|ZP_05283088.1| putative outer membrane protein [Bacteroides fragilis 3_1_12] gi|313148766|ref|ZP_07810959.1| lipoprotein [Bacteroides fragilis 3_1_12] gi|317477470|ref|ZP_07936697.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA] gi|60495255|emb|CAH05749.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|313137533|gb|EFR54893.1| lipoprotein [Bacteroides fragilis 3_1_12] gi|316906390|gb|EFV28117.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA] Length = 213 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 6/187 (3%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + +D EK + + + + + +++R + + +KI + + L A + + + Sbjct: 30 AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 + G ++ +F S E +L + ++ I I GHTD Sbjct: 89 YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNI- 147 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335 + N LS +RA + L +G+ + I++ G++ S+ + NRR++ Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205 Query: 336 ILVEDRQ 342 I + + + Sbjct: 206 IFITNDE 212 >gi|124022953|ref|YP_001017260.1| hypothetical protein P9303_12471 [Prochlorococcus marinus str. MIT 9303] gi|123963239|gb|ABM77995.1| Hypothetical protein P9303_12471 [Prochlorococcus marinus str. MIT 9303] Length = 252 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 12/122 (9%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 +I+ +FD + P + L+ + + + ++ + + GHTD+ + N Sbjct: 132 LIELAADVLFDFDKANLKPSAVASLETVAKRIRETSQGDVRVEGHTDS---KGSNEYNQT 188 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRRIDILV 338 LS RA S + G + GF + +++ +P NRR++I++ Sbjct: 189 LSEKRAISVRDWFVSDGGLSNVQFVTKGFGELKPVVSNTTEKGGDNPIGRQRNRRVEIII 248 Query: 339 ED 340 + Sbjct: 249 KT 250 >gi|307822441|ref|ZP_07652673.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307737007|gb|EFO07852.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 363 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S+ +L + L I ++GHT + + N +LS RA S Sbjct: 260 FKYNSAELTLNAKEILDGVAGNLVSYPQKNDIEVQGHTSSE---GTNKYNLKLSQRRAQS 316 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L GV +R++ G+ + + + NRR++++ Sbjct: 317 VVDYLKLKGV-TNRLTA-KGYGETQPIADNSTEAGKAENRRVELI 359 >gi|163754618|ref|ZP_02161740.1| phosphoglycerate kinase [Kordia algicida OT-1] gi|161325559|gb|EDP96886.1| phosphoglycerate kinase [Kordia algicida OT-1] Length = 457 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 31/267 (11%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 KG+ + P+ D D T L +++ ++ + Sbjct: 215 KGLPEFNGCPDTDGDGIEDSKDDCPDTAGLAALNGCPDTDGDGIADAKDDCPEVAGTAAM 274 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C ++ KD C + N P K+ + + R ++A Sbjct: 275 NGCPDADGDGITDAKDNCPNE-----AGPSANKGCPWTDKDGDGVLDKDDRCPEVAG--- 326 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGE 257 VA+N + T I I + N T F+ ET +L KI E Sbjct: 327 ------VAENDGCPPIPRMTE----IEITELDNLARTVYFNSGKDSFKQETYEILNKIVE 376 Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 ++ E +I GHTD+ N +LS RA + L ++ + I G+ Sbjct: 377 LIKGFPAEEFTIGGHTDSV---GSDSLNQKLSEKRANAVKSYLESK--LSNKFTAI-GYG 430 Query: 317 HHRLKIASDP--MNSANRRIDI-LVED 340 + ++ + NRR++I LV++ Sbjct: 431 ENEPIASNRTRKGRAQNRRVEIKLVKN 457 >gi|260431631|ref|ZP_05785602.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415459|gb|EEX08718.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 643 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 7/121 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARD 283 I + F+ S+ ++ L +I E+L + I+GHTD+ Sbjct: 487 RIVEVQSGGKITFEPGSATVSADSRDSLNQIAEILRECGPIRMEIQGHTDSQ---GREEM 543 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 N +LS RA S L V S + G+ + + + NRRI+ + Sbjct: 544 NQQLSQARAQSILNELRARRVPTSSFSAV-GYGETQPIADNGTEEGREENRRIEFRLIRP 602 Query: 342 Q 342 + Sbjct: 603 E 603 >gi|188992991|ref|YP_001905001.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. campestris str. B100] gi|167734751|emb|CAP52961.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. campestris] Length = 431 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 G +I++ D +FD + P+ VL + L + + +RGHTDA + Sbjct: 314 GYVITLSD---RILFDFDKAAIRPDAARVLDTLAAALGKVSVAQMEVRGHTDA---KGGD 367 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334 N LS RA + L G ++ + G+ + + +P NRR+ Sbjct: 368 DYNQALSERRANAVLAALRTRGTAQS--ASAKGYGESQPLAPNTVKGQDNPGGRQLNRRV 425 Query: 335 DILVED 340 ++ + Sbjct: 426 ELFLRT 431 >gi|163732619|ref|ZP_02140064.1| OmpA family domain protein [Roseobacter litoralis Och 149] gi|161393979|gb|EDQ18303.1| OmpA family domain protein [Roseobacter litoralis Och 149] Length = 210 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 10/145 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L D V T +++S+ +F S P+ L + Sbjct: 71 LDQQEAELRRDLGNDDVQITNTGDRLIVSL---PQDLLFATDSFSVRPDLQNDLYTVAGS 127 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + I + GHTD+ A N +LS RA S +LM +GV+ R+ I G Sbjct: 128 LQNYPASTIQVIGHTDSD---GDAAYNQQLSERRAGSVAGILMNAGVTSSRLQTI-GRGE 183 Query: 318 HRLKIAS--DPMNSANRRIDILVED 340 + ++ + + NRR++I++ Sbjct: 184 SQPVASNLNETGKAQNRRVEIVILP 208 >gi|153806760|ref|ZP_01959428.1| hypothetical protein BACCAC_01032 [Bacteroides caccae ATCC 43185] gi|149131437|gb|EDM22643.1| hypothetical protein BACCAC_01032 [Bacteroides caccae ATCC 43185] Length = 238 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 66 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 175 AQSVSSYLLSCGVSTNQIKGVQGMGESDPVASNDTAAGREQNRRVEV 221 >gi|50084108|ref|YP_045618.1| putative outer membrane protein [Acinetobacter sp. ADP1] gi|49530084|emb|CAG67796.1| putative outer membrane protein [Acinetobacter sp. ADP1] Length = 217 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L KK+ ++G GV G + ++ FD + S P Sbjct: 77 LDQKEKKLRQQMAGT-------GVEVNRNPDGSVGLVM--PGNITFDTNKSNIKPNFYST 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + LA + I + G+TD + N LS RA S L GVS RI+ Sbjct: 128 LNKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVANYLSGQGVSSSRIN 184 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ ++ NRR++I + +RQ Sbjct: 185 A-QGYGSSNPIASNATAQGREQNRRVEISIYERQ 217 >gi|262373228|ref|ZP_06066507.1| inner membrane lipoprotein yiaD [Acinetobacter junii SH205] gi|262313253|gb|EEY94338.1| inner membrane lipoprotein yiaD [Acinetobacter junii SH205] Length = 220 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 16/206 (7%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 S +G D+ + + ++ + + I SGL Sbjct: 20 QTMSGQGNDIGGVSYDKAALGTLIGAAAGYGISKGNANSSSQNNRAAAIGAILGGASGLY 79 Query: 208 ADNIVKGVLFETTRTGILI--------SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 DN K + + TG+ + +I + FD + S P L K+ + L Sbjct: 80 LDNKEKKLRAQMAGTGVEVGRNPDGSVQLI-MPGSITFDTNKSNIKPNFYGTLNKVAQTL 138 Query: 260 A-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 A + I + G+TD + N LS RA S L GVS RI G Sbjct: 139 AEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKNYLASQGVSSSRIDA-QGLGSS 194 Query: 319 RLKIASDPMNSA--NRRIDILVEDRQ 342 ++ NRR++I + +Q Sbjct: 195 NPIASNATAAGKEQNRRVEISIYAKQ 220 >gi|282853319|ref|ZP_06262656.1| OmpA family protein [Propionibacterium acnes J139] gi|282582772|gb|EFB88152.1| OmpA family protein [Propionibacterium acnes J139] gi|314922410|gb|EFS86241.1| OmpA family protein [Propionibacterium acnes HL001PA1] gi|314965447|gb|EFT09546.1| OmpA family protein [Propionibacterium acnes HL082PA2] gi|314982607|gb|EFT26699.1| OmpA family protein [Propionibacterium acnes HL110PA3] gi|315091130|gb|EFT63106.1| OmpA family protein [Propionibacterium acnes HL110PA4] gi|315094263|gb|EFT66239.1| OmpA family protein [Propionibacterium acnes HL060PA1] gi|327329241|gb|EGE71001.1| putative outer membrane protein A [Propionibacterium acnes HL103PA1] Length = 363 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD Sbjct: 243 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDN- 298 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S +VL I+ ++ G ++D NR Sbjct: 299 --SGSASHNLDLSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVASNDSEAGRCLNR 354 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 355 RVTITVKE 362 >gi|115375674|ref|ZP_01462929.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] gi|310821151|ref|YP_003953509.1| OmpA-like Outer membrane domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115367322|gb|EAU66302.1| OmpA domain protein [Stigmatella aurantiaca DW4/3-1] gi|309394223|gb|ADO71682.1| OmpA-like Outer membrane domain protein [Stigmatella aurantiaca DW4/3-1] Length = 380 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 + F + S + VL + + L + + + I GH+D+ +N LS Sbjct: 264 KEKLYFAWNQSTLEEASFPVLDEAVQALKDNPDFRVQIEGHSDS---SGADDNNQTLSEK 320 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA + L+ G++++R+ GF+ ++ + NRR++ +V Sbjct: 321 RAKTVLDYLVAHGIAKERLVS-KGFSSSVPLDTNNTVAGRENNRRVEFVV 369 >gi|317009174|gb|ADU79754.1| flagellar motor protein MotB [Helicobacter pylori India7] Length = 257 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDNTPLAKTRFKSHYELAANRAYRVMKVLMQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|255013439|ref|ZP_05285565.1| OmpA family outer membrane protein [Bacteroides sp. 2_1_7] Length = 213 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ +TL V + ++ + +F +SS + Sbjct: 59 KKMDKQKKELEATLPEDTKIESVNN------GEALKVTF---DSGILFATNSSTLSDASK 109 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+ L + + I I G TD + N LS RA S Y LM GVS DR Sbjct: 110 SALRNFATSLKANPDTDIRIIGFTDNT---GKVDYNQTLSEKRAKSVYDYLMMQGVSTDR 166 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G H ++D S NRR++I++ Q Sbjct: 167 MV-YEGKGIHDPVASNDTPEGRSLNRRVEIVILANQ 201 >gi|114765063|ref|ZP_01444210.1| Possible outer membrane protein, OmpA family [Pelagibaca bermudensis HTCC2601] gi|114542610|gb|EAU45635.1| Possible outer membrane protein, OmpA family [Roseovarius sp. HTCC2601] Length = 452 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPF--R 278 + + +I +F + + ++ I +V+ + + + GHTD+ P Sbjct: 328 LAVVVIQATQPEVFRSAKADINDVYSPLVGSIAQVIRDNIEFIGAVRVVGHTDSIPVQTS 387 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 N R N LS RA + +L GV + +S G A + + NRR+++ Sbjct: 388 NPFRSNQGLSEARAKTIADMLRAQGVPAELVSS-EGRAAEDPIADNGTRDGRARNRRVEV 446 Query: 337 LVEDR 341 +++ + Sbjct: 447 ILQKK 451 >gi|330807377|ref|YP_004351839.1| lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375485|gb|AEA66835.1| Putative lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 167 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K FE T G +F P + ++++IG+ L + + + + Sbjct: 41 VLKQQGFELTDDGWA---FGLSGKVLFGSDVENLNPASTEIVERIGKALLGAGIQRVRVD 97 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA N +LS+ RA S +VL G+ E+ + ++ G + ++D + Sbjct: 98 GHTDA---SGSQAYNEQLSMRRAASVSKVLTAVGMREENV-QLRGLGSSKPVASNDTASG 153 Query: 330 A--NRRIDILV 338 NRR+ I+V Sbjct: 154 RTENRRVAIVV 164 >gi|260552490|ref|ZP_05825866.1| inner membrane lipoprotein yiaD [Acinetobacter sp. RUH2624] gi|260405297|gb|EEW98793.1| inner membrane lipoprotein yiaD [Acinetobacter sp. RUH2624] Length = 217 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L KK+ ++G GV G + I+ + FD + S P Sbjct: 77 LDQKEKKLREQMAGT-------GVEVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYAT 127 Query: 252 LQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + LA + I + G+TD + N LS RA S L GVS RI Sbjct: 128 LDKVAQTLAEDNKSAILVTGYTDNT---GNDSINIPLSQARAQSVKIYLAGKGVSSSRID 184 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ + + NRR++I + +Q Sbjct: 185 A-QGYGSSNPIADNSTASGREQNRRVEISIYAKQ 217 >gi|113968495|ref|YP_732288.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113883179|gb|ABI37231.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 487 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ S LPE V++ + L + + + GHTD + N LS RA + Sbjct: 380 LFEYDSDKLLPEAQPVVEVLASYLKANPKRAFYVVGHTDD---KGNQAYNQGLSQRRAVA 436 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 ++L S G+ ++ + G H + + NRR+++++ Sbjct: 437 IVKLLTTSHGIPTQQLEAV-GIGEHAPVASNSDEAGQQQNRRVELVLRS 484 >gi|319778081|ref|YP_004134511.1| ompa/motb domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171800|gb|ADV15337.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 176 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-----IRGHTDASPFRNIARDNWRLSLDR 291 F S+ L + + L +S + G+TDA+ N LS R Sbjct: 74 FGLDSAELDATARAELDEFAKALKD--NRLSTFSFVVEGYTDAT---GTVHHNEGLSQRR 128 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 A S L SG+ DRI+ + G + +S+P + NRR+++ ++ + Sbjct: 129 AKSVAAFLTASGIEPDRINAV-GMGEKNPR-SSNPYDPLNRRVEMRIKTQ 176 >gi|313674928|ref|YP_004052924.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312941626|gb|ADR20816.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 679 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 11/132 (8%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 K +L G + I + F+ + + L ++ ++++ + I I GH Sbjct: 556 KQLLMAPIEVGKTVII----DNIYFNFDKTTLKEASFPELDRLTDLMSQNPGIKIEIIGH 611 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNS 329 TD+ + N LS RA + + L++ G++++R++ G +D + Sbjct: 612 TDS---KGSDDYNLILSEGRAQAVMEYLLEKGIAQNRMT-FKGLGETAPISSNNTDEGRA 667 Query: 330 ANRRIDILVEDR 341 NRR++ + + Sbjct: 668 ENRRVEFTIVAK 679 >gi|237707828|ref|ZP_04538309.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229458156|gb|EEO63877.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 213 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 6/187 (3%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + +D EK + + + + + +++R + + +KI + + L A + + + Sbjct: 30 AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 + G ++ +F S E +L + ++ I I GHTD Sbjct: 89 YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNI- 147 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335 + N LS +RA + L +G+ + I++ G++ S+ + NRR++ Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205 Query: 336 ILVEDRQ 342 I + + + Sbjct: 206 IFITNDE 212 >gi|126734944|ref|ZP_01750690.1| OmpA family domain protein [Roseobacter sp. CCS2] gi|126715499|gb|EBA12364.1| OmpA family domain protein [Roseobacter sp. CCS2] Length = 220 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 18/210 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + Q+++ + + G L T+ + S+ + L + + L Sbjct: 25 PAGPNQNQNTQQGALIGAGAGAVLGALTNNDGSVRERNQAALIGAALGAGVGAGVGNSLD 84 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 A+ + L V + + + + +F +S+ L+ Sbjct: 85 RQAEDLRRQLRN--------DVGVSNNGRDLRVVLSED---LLFATNSTQLSGTAQRELR 133 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + L + +++ GHTD A N LS RA + VL+ GVS +RI + Sbjct: 134 IVANSLQQYPDSTVNVIGHTDNV---GEASFNQGLSERRASAVSSVLVGGGVSRNRI-RT 189 Query: 313 SGFAHHRLKIA--SDPMNSANRRIDILVED 340 G + + + ANRR++I++ Sbjct: 190 IGAGENNPVASNLNAAGRQANRRVEIVITP 219 >gi|146300076|ref|YP_001194667.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146154494|gb|ABQ05348.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 727 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 12/127 (9%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLP----ETIVVLQKIGEVLAHSTE-VISIRGHT 272 + T+ + + + + F + ET L I E+L + +I GHT Sbjct: 601 KVTKETLA-QLKMEAKSIFFTTGKATLSDAKMGETSGRLDAIKEILKNYPNAKFAINGHT 659 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D A+ N +LS RA +L++ GV+ ++ G+ + + + Sbjct: 660 DNV---GNAKVNQKLSEQRAKVVMDLLIEKGVNPANLTS-KGYGASKPVKSNKTASGRAE 715 Query: 331 NRRIDIL 337 NRR +I+ Sbjct: 716 NRRTEIV 722 >gi|86147507|ref|ZP_01065818.1| outer membrane protein [Vibrio sp. MED222] gi|218709202|ref|YP_002416823.1| putative outer membrane protein [Vibrio splendidus LGP32] gi|85834675|gb|EAQ52822.1| outer membrane protein [Vibrio sp. MED222] gi|218322221|emb|CAV18335.1| putative outer membrane protein [Vibrio splendidus LGP32] Length = 222 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 14/209 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + +++ G+ S I + + +++ + Sbjct: 18 QATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGG 77 Query: 204 SGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 G D + E +G+ + ++ N FD S L+ + Sbjct: 78 IGYYFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDSGSYALESSIHKTLRGVA 137 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + + I GHTD++ N LS RA S L+ V+ R G Sbjct: 138 RILVEYPDTSLVIEGHTDST---GSESSNQVLSERRAESVRAFLISQDVAAGRAIA-RGN 193 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ + NRR++I + + Sbjct: 194 GERYPLCDNNTSQGRACNRRVEIQILPLK 222 >gi|332300760|ref|YP_004442681.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177823|gb|AEE13513.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 296 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 225 LISIIDQR-NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282 I I++ N F + + ET VL + +++ + + + I GHT Sbjct: 185 RIEEIEKNFNAAKFVQGKADLTDETKFVLHDLAKLMEANPDLKLKIEGHTSEE---GDEA 241 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N RLS +RA A L+ G+S DR+ + G ++P NRR + +V Sbjct: 242 FNQRLSEERAQVAVDFLISQGISADRL-QAEGKGSSEPIDPNNPE--VNRRTEFIV 294 >gi|166711089|ref|ZP_02242296.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Xanthomonas oryzae pv. oryzicola BLS256] Length = 264 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 85/264 (32%), Gaps = 18/264 (6%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 G+ + + + + V + + R + + Q Sbjct: 14 SGLITAFAVSAQVAAPATGGVGERPVIVEGVVPDQATKARILNNLRDTYGSARIVDRVQV 73 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL--AKK 198 E + K + + E N +S + + +R++ DL A Sbjct: 74 ESIPSPPNWGEYVAKMVSPGLKRVAAGKLEVNGQAVRISGQVVNEAQRQQVASDLSLASN 133 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 S T++ + + + + T +I F SS P + +L ++ E Sbjct: 134 TSYTVTNSLKLGGSEQGVLDQTLGNRIIE---------FQSGSSRLTPLGMRILDEMVEK 184 Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 ++ I GHTD N LS RA + +++ G+ R++ + G Sbjct: 185 MSQMKDARFLIIGHTDNV---GQRESNLALSQARAQAVKDYIVQKGIDGARMN-VQGKGP 240 Query: 318 HRLK--IASDPMNSANRRIDILVE 339 + AS + NRRI ++ Sbjct: 241 DQPVADNASPDGRARNRRIQFKIQ 264 >gi|332968653|gb|EGK07706.1| OmpA family protein [Psychrobacter sp. 1501(2011)] Length = 217 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +++ +++ ++G GV + G I +I F S+ P Sbjct: 74 MENQKRQLEQQMAGT-------GVEVKHDGQG-NIDLI-MPGNITFAHDSTNINPSFYNT 124 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + + +++ GHTD+ N N LS RA S L+ GVS RI Sbjct: 125 LDKLASTMNQYNQTTVTVMGHTDS--VGNPTY-NQGLSQRRAQSVAGYLVNRGVSGARI- 180 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + G+ + + NRR++I + Q Sbjct: 181 QTLGYGQSQPIADNSTEQGRMQNRRVEIKLNAPQ 214 >gi|323495404|ref|ZP_08100481.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546] gi|323310327|gb|EGA63514.1| outer membrane protein OmpA [Vibrio brasiliensis LMG 20546] Length = 324 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T F+ +S+ PE+ L ++ E L + + + G+TD+ A N +S R Sbjct: 211 GTGSFELNSTQLKPESASQLDELVEFLNTYPQAKVEVIGYTDS---SGAAEYNQVVSEKR 267 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S L + G+ RI+ G + ++D NRR++++V Sbjct: 268 AESVASTLEQKGIDASRITA-RGEGENNPVASNDTREGRQQNRRVEVIV 315 >gi|157364674|ref|YP_001471441.1| OmpA/MotB domain-containing protein [Thermotoga lettingae TMO] gi|157315278|gb|ABV34377.1| OmpA/MotB domain protein [Thermotoga lettingae TMO] Length = 289 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 9/116 (7%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265 +A+ + + G +I + D F +S+ PE +L KIG V+ H+T V Sbjct: 88 IAEEYKGKITIQEKDEGTVIIMQDM---AFFYPASAKLTPEAKELLGKIGSIVIEHTTNV 144 Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I G+ D P +I NW LS RA S Q + + + R + A R Sbjct: 145 LQIYGYADDQPLSQDSIYVSNWHLSSARASSVVQFFTEE-LKKRR--SVERLADIR 197 >gi|160885976|ref|ZP_02066979.1| hypothetical protein BACOVA_03981 [Bacteroides ovatus ATCC 8483] gi|260170568|ref|ZP_05756980.1| OmpA family outer membrane protein [Bacteroides sp. D2] gi|315918915|ref|ZP_07915155.1| outer membrane protein [Bacteroides sp. D2] gi|156108789|gb|EDO10534.1| hypothetical protein BACOVA_03981 [Bacteroides ovatus ATCC 8483] gi|313692790|gb|EFS29625.1| outer membrane protein [Bacteroides sp. D2] Length = 238 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 20/167 (11%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + L K+ + AK+I + DN + T +GI +F Sbjct: 66 AGTGALIGKKMDKAAAEAKQIEGAQVEQITDNNGLQAVKVTFDSGI-----------LFT 114 Query: 239 KSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNI-----ARDNWRLSLDR 291 ++ L K VL + + +SI G+TD ++N + N LS +R Sbjct: 115 TGNANLSAAAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWKNSTAAQSQQKNLNLSQER 174 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 A S L+ GVS ++I + G ++D NRR+++ Sbjct: 175 AQSVSSYLLSCGVSTNQIKGVQGMGESDPVASNDTAAGREQNRRVEV 221 >gi|146329067|ref|YP_001209253.1| OmpA family protein [Dichelobacter nodosus VCS1703A] gi|146232537|gb|ABQ13515.1| OmpA family protein [Dichelobacter nodosus VCS1703A] Length = 298 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 13/114 (11%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 I + +FD + ++ + L +++ GHTD++ + Sbjct: 188 RIEL-----KILFDNDKHFVKQQYYSEIETVAGYLRQYPNTTVTLEGHTDSN--ASEQY- 239 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 N LS R + VL++ G+S RIS + G+ + +++ NRR+ Sbjct: 240 NINLSQRRVNAVRDVLIQHYGISPARISAV-GYGESQPIASNNTAAGRQQNRRV 292 >gi|77457293|ref|YP_346798.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77381296|gb|ABA72809.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1] Length = 264 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 22/237 (9%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 ST ++ N L + Q+ T+D+ D L+K + + L Sbjct: 21 STPPNPNLEQARTNYAGLQANPQASKVAALETKDASDYLDKADKAYLDKEDAAKVDQ-LA 79 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVA----------DNIVKGVLFETTRTGILI 226 L+ +++ K+ L+ + + + + + + T G L+ Sbjct: 80 YLTNQRVEVAKQTIALRTAENNLKNAAAQRAQARLDARDQQIKQLQDSLNAKQTDRGTLV 139 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 + D +F + + +V + K+ + L + + + + G+TD++ A N Sbjct: 140 TFGD----VLFATNKADLKSSGLVNINKLAQFLQENPDRKVIVEGYTDST---GSASYNQ 192 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 LS RA S L+K GV RI + G+ + + NRR+++ + + Sbjct: 193 SLSERRATSVQVALIKMGVDPSRIV-VQGYGKEYPVADNGSVSGRAMNRRVEVTISN 248 >gi|224371628|ref|YP_002605792.1| putative outer membrane protein [Desulfobacterium autotrophicum HRM2] gi|223694345|gb|ACN17628.1| putative outer membrane protein [Desulfobacterium autotrophicum HRM2] Length = 350 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 16/301 (5%) Query: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF-GKNLMTASKGIFDEQNPPERSSQNKI 98 + L+ F ++M + + F +++ K E + ++ N Sbjct: 59 LLKTLICFIILMPFNVQAEPVSSSDSSDAFKLVERDSILDLVKSYETELDLTDKDILNFK 118 Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 ++ +++ + + + R N ++ + + + + L Sbjct: 119 MEREWLYLKISTIQDQNRLPPEVLKASRSALNQKIMTAQARKKQLMELIQIHGRDIEQLN 178 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 K D + + +K L++ L+ + Sbjct: 179 KMIDHAGGSDLSYPSKTAKSRSRGMPPSGVEKALEE----------SLIQAGLENHFEVA 228 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR 278 G+++ +FD L ++ L + ++ + G TD R Sbjct: 229 VEGPGLVLE---SVFPILFDPCKFALTDAHKRFLGRLAGFLKPYSVLVEVTGFTDYRKIR 285 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-KIASDPMNSANRRIDIL 337 N LS RA + + L + G+ + KI+G ++ S+ +RR DI Sbjct: 286 GTKMTNIELSAKRAGAVVRELRERGMKSS-VFKITGMGEYKKCLEKSERCRVLSRRADIT 344 Query: 338 V 338 + Sbjct: 345 I 345 >gi|254482387|ref|ZP_05095627.1| type I secretion outer membrane protein, TolC family, putative [marine gamma proteobacterium HTCC2148] gi|214037392|gb|EEB78059.1| type I secretion outer membrane protein, TolC family, putative [marine gamma proteobacterium HTCC2148] Length = 631 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS+ + + VL + ++ GHTD+S + W LS RA + Sbjct: 526 FDFNSSVISSAYDSEIARSAGVLRENPGVRATVEGHTDSS--GENDYNQW-LSERRANAV 582 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 +L+ + G+S +++ I G +D + NRR++++++ Sbjct: 583 RDMLINEHGISPEQLVAI-GRGEDYPIAGNDTAEDRARNRRVELVMDT 629 >gi|83814826|ref|YP_444492.1| OmpA family protein [Salinibacter ruber DSM 13855] gi|83756220|gb|ABC44333.1| OmpA family protein [Salinibacter ruber DSM 13855] Length = 230 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 10/133 (7%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D + E GI ++ + +FD SS E L + E + + I Sbjct: 85 DEELDNADVERVGEGIKVTF---DSGILFDFDSSTLRAEARQNLTEFAESMQGFEDTKIL 141 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 + GHTDA N +LS RA SA + L+ GV R++ + G +++ Sbjct: 142 VVGHTDAQ---GSEEYNQKLSDRRAESATRHLVDRGVDPSRLTSV-GRGETEPVASNETE 197 Query: 328 NSA--NRRIDILV 338 NRR+++ + Sbjct: 198 EGRQQNRRVEVAI 210 >gi|83647008|ref|YP_435443.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83635051|gb|ABC31018.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 493 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 66/152 (43%), Gaps = 17/152 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +++ ++ + L + D++ + + + T +L FD ++ E+ Sbjct: 351 QQIILESEALEDDLITVDVDSLSRDI--DETGKALL-------YGVFFDTDKAVVKDESK 401 Query: 250 VVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 L+ I +L E++ + GHTD + + N LS RA + + L+K GV++ Sbjct: 402 PTLEAIAGLLKKRPELLLYVTGHTDDT---GAFQHNIELSSARAKAVVERLIKDYGVAQA 458 Query: 308 RISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 R++ G + + D NRR++++ Sbjct: 459 RLTP-YGVGPVAPEADNLSDAGKKRNRRVELI 489 >gi|13472168|ref|NP_103735.1| hypothetical protein mll2374 [Mesorhizobium loti MAFF303099] gi|14022913|dbj|BAB49521.1| mll2374 [Mesorhizobium loti MAFF303099] Length = 366 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ ++ +L ++ V+ + + G+TD+ N LS RA + Sbjct: 261 FRPASARLDAKSRPLLTEVEGVVGKCPTLKVEVSGYTDSD---GSPEANKALSERRAQAV 317 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L+ GV +IS +G A+D + NRRI+ Sbjct: 318 AEALVAGGVPRQQISA-AGHGEENPVAANDTPKNKALNRRIE 358 >gi|254230148|ref|ZP_04923543.1| outer membrane protein OmpA [Vibrio sp. Ex25] gi|262394952|ref|YP_003286806.1| outer membrane protein A [Vibrio sp. Ex25] gi|151937341|gb|EDN56204.1| outer membrane protein OmpA [Vibrio sp. Ex25] gi|262338546|gb|ACY52341.1| outer membrane protein A precursor [Vibrio sp. Ex25] Length = 320 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T FD +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 207 GTGSFDLNSTTLKPESAAKLDNLVAFLNEHPQANVEVVGYTDT---SGPAAYNLKVSEKR 263 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S L++ G+ RI + G + ++D NRR++I+V Sbjct: 264 AESVANALVEKGIDSSRI-QARGEGENNPIASNDTREGRQQNRRVEIVV 311 >gi|254475344|ref|ZP_05088730.1| OmpA/MotB [Ruegeria sp. R11] gi|214029587|gb|EEB70422.1| OmpA/MotB [Ruegeria sp. R11] Length = 208 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E +L + + + GHTDA N L L RA +A Sbjct: 65 FAFDSAQLDAEARAILDQQAHWIRQFPEVRFRVYGHTDAV---GSNSYNKTLGLRRARAA 121 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ + F + I + NRR Sbjct: 122 VSYLVSRGISRSRLQAVVSFGETQPLIPTSDRERRNRR 159 >gi|323357271|ref|YP_004223667.1| outer membrane protein [Microbacterium testaceum StLB037] gi|323273642|dbj|BAJ73787.1| outer membrane protein [Microbacterium testaceum StLB037] Length = 165 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 + +FD S+ P+ VL + +L + + GHTDA +N LS R Sbjct: 52 DAVLFDFDSAEIRPDAAGVLDSLAALLTQGAVPAATVSGHTDAI---GTDAENQVLSERR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSANRRIDILV 338 A + L + G D G+ R A++ NRR++ILV Sbjct: 109 AQAVVDALRRRGTQTD--WTAEGYGESRPVAANELDGVDNPAGRQLNRRVEILV 160 >gi|255036344|ref|YP_003086965.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949100|gb|ACT93800.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 502 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +I + L K+ E+L T I + GHTDA + A + LS R +A Sbjct: 385 FDTDKAIIRNASKETLSKVVELLNMRTNCRIVLVGHTDAR--ASDAYNV-SLSRRRVDAA 441 Query: 296 YQVLMKSGV-SEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + L+++G+ RI + +R + +NRR++I + Sbjct: 442 KRFLVRAGLTDPSRIIA-EYYGEYRPIAENTTVEGLQSNRRVEIKILP 488 >gi|148546044|ref|YP_001266146.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148510102|gb|ABQ76962.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 247 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F S+ P L + + I + G T Sbjct: 107 NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPLNNLAGSFKQFNQNTIEVVGFT 165 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330 D++ + N LS RA + L GV RI + G + ++ N + Sbjct: 166 DST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI-SVRGMGPDQPIASNADANGRAQ 221 Query: 331 NRRIDILVED 340 NRR+++ ++ Sbjct: 222 NRRVEVNLKP 231 >gi|53718641|ref|YP_107627.1| OmpA family transmembrane protein [Burkholderia pseudomallei K96243] gi|53725212|ref|YP_102481.1| ompA family protein [Burkholderia mallei ATCC 23344] gi|67639751|ref|ZP_00438587.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|121600283|ref|YP_993611.1| ompA family protein [Burkholderia mallei SAVP1] gi|124385832|ref|YP_001028928.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126440263|ref|YP_001058104.1| ompA family protein [Burkholderia pseudomallei 668] gi|126449467|ref|YP_001081159.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|126452105|ref|YP_001065339.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|134281074|ref|ZP_01767783.1| OmpA family protein [Burkholderia pseudomallei 305] gi|167003046|ref|ZP_02268836.1| OmpA family protein [Burkholderia mallei PRL-20] gi|167718574|ref|ZP_02401810.1| ompA family protein [Burkholderia pseudomallei DM98] gi|167814738|ref|ZP_02446418.1| ompA family protein [Burkholderia pseudomallei 91] gi|167901748|ref|ZP_02488953.1| ompA family protein [Burkholderia pseudomallei NCTC 13177] gi|217419903|ref|ZP_03451409.1| ompA family protein [Burkholderia pseudomallei 576] gi|226194470|ref|ZP_03790068.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|237811323|ref|YP_002895774.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|242316655|ref|ZP_04815671.1| ompA family protein [Burkholderia pseudomallei 1106b] gi|254177848|ref|ZP_04884503.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|254190801|ref|ZP_04897308.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|254196800|ref|ZP_04903224.1| ompA family protein [Burkholderia pseudomallei S13] gi|254261713|ref|ZP_04952767.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|254298274|ref|ZP_04965726.1| ompA family protein [Burkholderia pseudomallei 406e] gi|254357860|ref|ZP_04974133.1| OmpA family protein [Burkholderia mallei 2002721280] gi|52209055|emb|CAH34995.1| putative OmpA family transmembrane protein [Burkholderia pseudomallei K96243] gi|52428635|gb|AAU49228.1| ompA family protein [Burkholderia mallei ATCC 23344] gi|121229093|gb|ABM51611.1| ompA family protein [Burkholderia mallei SAVP1] gi|124293852|gb|ABN03121.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126219756|gb|ABN83262.1| ompA family protein [Burkholderia pseudomallei 668] gi|126225747|gb|ABN89287.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|126242337|gb|ABO05430.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|134247380|gb|EBA47465.1| OmpA family protein [Burkholderia pseudomallei 305] gi|148026987|gb|EDK85008.1| OmpA family protein [Burkholderia mallei 2002721280] gi|157808098|gb|EDO85268.1| ompA family protein [Burkholderia pseudomallei 406e] gi|157938476|gb|EDO94146.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|160698887|gb|EDP88857.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|169653543|gb|EDS86236.1| ompA family protein [Burkholderia pseudomallei S13] gi|217397207|gb|EEC37223.1| ompA family protein [Burkholderia pseudomallei 576] gi|225933555|gb|EEH29544.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|237503911|gb|ACQ96229.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|238520349|gb|EEP83810.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|242139894|gb|EES26296.1| ompA family protein [Burkholderia pseudomallei 1106b] gi|243061351|gb|EES43537.1| OmpA family protein [Burkholderia mallei PRL-20] gi|254220402|gb|EET09786.1| ompA family protein [Burkholderia pseudomallei 1710a] Length = 215 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ +R+S G A++ + NRR++I + Q Sbjct: 165 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213 >gi|206560984|ref|YP_002231749.1| putative OmpA family membrane protein [Burkholderia cenocepacia J2315] gi|198037026|emb|CAR52947.1| putative OmpA family membrane protein [Burkholderia cenocepacia J2315] Length = 215 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + SI G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALVQRGVNGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQ 212 >gi|4530365|gb|AAD22005.1| major outer membrane protein [Pseudomonas fluorescens] Length = 343 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 237 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 293 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A++ + NRR++ Sbjct: 294 KQVLTNQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 335 >gi|148653943|ref|YP_001281036.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1] gi|148573027|gb|ABQ95086.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1] Length = 218 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 15/154 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 +++ K++ ++G GV I ++ F S+ Sbjct: 74 MENQEKQLKQQMAGT-------GVEVNRNPNTGNIDLV-MPGNITFAHDSTNINGSFYNT 125 Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + + +++ GHTD+ N + N LS RA + L++ GVS +RI Sbjct: 126 LDKLASTMVQYGDTTVNVMGHTDS--VGNPSY-NQGLSERRAQAVASYLIQRGVSSNRI- 181 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + G+ ++ ++ + NRR++I + Q Sbjct: 182 RTMGYGQNQPVASNSTESGRLQNRRVEIQIVAPQ 215 >gi|51702435|gb|AAU08790.1| OmpA [Bordetella ansorpii] Length = 178 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ + A N +LS RA S Sbjct: 72 FFDFDKSTLKPEGRQLLDQVASQVNTINLETLIAVGHTDS--IGSDAY-NQKLSERRAAS 128 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G + ++ + NRR++I +V R+ Sbjct: 129 VKSYLVSKGIDANRIY-TEGKGEKQPVASNSTREGRAKNRRVEIEIVGTRR 178 >gi|261837954|gb|ACX97720.1| flagellar motor rotation protein [Helicobacter pylori 51] Length = 255 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDAINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VLM+ GV+ Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLAKTRFKSHYELAANRAYRVMKVLMQYGVN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|257456150|ref|ZP_05621347.1| OmpA family protein [Treponema vincentii ATCC 35580] gi|257446236|gb|EEV21282.1| OmpA family protein [Treponema vincentii ATCC 35580] Length = 1355 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 13/146 (8%) Query: 203 LSGLVADNIVKGVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L+ +V + VL + I SII ++N FD + I VL +I E+L Sbjct: 1211 LTSVVKGYVPIDVLVIRDGDKLKIAVPSIIFRKNAADFDGLEQNVVDRNIKVLTRIAEIL 1270 Query: 260 AHST-EVISIRGHTDASPFRNIARDNWR----LSLDRAYSAYQVLMKSGVSEDRISKISG 314 + + GH A+ R+ LS RA + + L++ GVS R+S + G Sbjct: 1271 NKFPEYKVQVEGH--ANNVSGTEREEKEDLIPLSAARADAVRRFLIERGVSRSRLSSV-G 1327 Query: 315 FAHHRLKIASDPMNS--ANRRIDILV 338 + + ++ NRR++ ++ Sbjct: 1328 IGGTKPIASLSDKDNWWKNRRVEFVL 1353 >gi|239818113|ref|YP_002947023.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239804690|gb|ACS21757.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 187 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 16/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 RL L ++ S+ G GV+ E T L ++ N FD + Sbjct: 45 ARLAALKTELESSTKGT-------GVVIEQTADNQLHLVV--PNELSFDVGRANVKRNLA 95 Query: 250 VVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL K+ E + + + + + GHTD + N RLS+ RA S L+ GVS Sbjct: 96 QVLDKVAEGLRSAAAASVRVVGHTDNT---GSEEGNERLSVSRADSVRNHLVSRGVSTTA 152 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 I+ G A+ + NRR++I V ++ Sbjct: 153 IT-TDGRGSREPIADNATPAGRAQNRRVEIFVAEK 186 >gi|254457130|ref|ZP_05070558.1| OmpA/MotB [Campylobacterales bacterium GD 1] gi|207085922|gb|EDZ63206.1| OmpA/MotB [Campylobacterales bacterium GD 1] Length = 407 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S + + +++K + L + + I G+TD+ + A N +LS RA + Sbjct: 304 FENNSDVVNTSSYDIIEKYADFLNNYSSYSAKIIGYTDS---KGSANYNQKLSEKRANAI 360 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 +L++ GV DR+S + G + + NRRI+ Sbjct: 361 KSMLLEKGVPADRLSSV-GMGESNPVADNSTKEGRAQNRRIE 401 >gi|167580182|ref|ZP_02373056.1| ompA family protein [Burkholderia thailandensis TXDOH] gi|257139912|ref|ZP_05588174.1| ompA family protein [Burkholderia thailandensis E264] Length = 215 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATDQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALAQRGVAATRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213 >gi|317153907|ref|YP_004121955.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944158|gb|ADU63209.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 380 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD PE+ +L +GE L I + GHTD+ R N LS RA Sbjct: 275 FDFDKDTIRPESYPLLDALGEALNTQQLKGRSIIVGGHTDS---RGDDAYNLALSKRRAN 331 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + L+ GV++D I + GF R A + NRR++I Sbjct: 332 AVKAYLVNKWGVAQDLIEAV-GFGKTRPIAAGSTTEAMRKNRRVEI 376 >gi|149774748|gb|ABR28420.1| OmpA/MotB [Delftia tsuruhatensis] Length = 219 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ N +LS+ RA + Sbjct: 111 FFDFDKSVLKPEGKAKLDDLASKVKGINLEVVIAVGHTDSV---GSDAYNQKLSVRRAEA 167 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 168 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 212 >gi|160900150|ref|YP_001565732.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1] gi|151500323|gb|ABS12102.1| OmpA/MotB [Delftia acidovorans] gi|160365734|gb|ABX37347.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1] Length = 219 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ N +LS+ RA + Sbjct: 111 FFDFDKSVLKPEGKAKLDDLASKVKGINLEVVIAVGHTDSV---GSDAYNQKLSVRRAEA 167 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 168 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 212 >gi|330808432|ref|YP_004352894.1| Outer membrane porin F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376540|gb|AEA67890.1| Outer membrane porin F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 344 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A++ + NRR++ Sbjct: 295 KQVLTNQYGVESSRVQSV-GYGESRPVADNATEAGRAVNRRVE 336 >gi|332975480|gb|EGK12371.1| OmpA/OmpF family outer membrane protein OprF [Psychrobacter sp. 1501(2011)] Length = 318 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 9/150 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPET 248 + LQ L+++ D ET + + +FD S+ P Sbjct: 166 QLLQGLSEQTHQKNRVEAKDCTTITQETETVEPPARVEVNTPITLDVLFDFDSAKIKPTY 225 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSE 306 L+++ + L+ + + GHTD++ A N LS RA + + L+ K G+ Sbjct: 226 QQRLREVAQFLSANANTKAILEGHTDST---GPASYNLTLSQARAEAVKKELVNKHGIDP 282 Query: 307 DRISKISGFAHHRLKIASDPMNSA--NRRI 334 +R++ G+ + + + NRR+ Sbjct: 283 NRLT-TQGYGESKPIDNNSTVQGRQNNRRV 311 >gi|167909987|ref|ZP_02497078.1| ompA family protein [Burkholderia pseudomallei 112] gi|254199385|ref|ZP_04905751.1| OmpA family protein [Burkholderia mallei FMH] gi|254205699|ref|ZP_04912051.1| OmpA family protein [Burkholderia mallei JHU] gi|147748981|gb|EDK56055.1| OmpA family protein [Burkholderia mallei FMH] gi|147753142|gb|EDK60207.1| OmpA family protein [Burkholderia mallei JHU] Length = 207 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 100 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 156 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ +R+S G A++ + NRR++I + Q Sbjct: 157 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 205 >gi|325286633|ref|YP_004262423.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322087|gb|ADY29552.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 235 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 17/175 (9%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 E + + R+ A+KI + G E GI+++ D Sbjct: 62 ELGAVIGGVVGGGAGVLIGNRMDKQAQKIEEEIPGA---------QVERVDDGIVVT-FD 111 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + + FD + + L K+ V + I + GHTD+ A N LS Sbjct: 112 ENSGVFFDTAKYNINGASKTSLDKLANVFIEYPDTNILVVGHTDS---SGAADYNMTLSK 168 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQ 342 +RA + L G++ R + F + ++ + NRR+++ + + Sbjct: 169 NRANAVTSYLTAKGIAASRFT-TEWFGEEKPTHDNSTPEGRAKNRRVNVAILPNE 222 >gi|34541639|ref|NP_906118.1| lipoprotein PG3 [Porphyromonas gingivalis W83] gi|5081699|gb|AAD39495.1|AF145799_1 immunogenic 23 kDa lipoprotein PG3 [Porphyromonas gingivalis] gi|34397957|gb|AAQ67017.1| lipoprotein PG3 [Porphyromonas gingivalis W83] Length = 223 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ + V +T G I ++ + +F +SS P + Sbjct: 70 KKMDKQKKELEAA---------VPDATIQTVNDGEAI-LVTFDSGILFATNSSTLSPNSR 119 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K + + + I I GHTD + + N LS RA S Y L GVS R Sbjct: 120 TALTKFAANMNKNPDTDIRIVGHTDNT---GSDKINDPLSERRAASVYSFLNSQGVSMSR 176 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 ++ G H + SANRR+++ + Sbjct: 177 MAA-EGRGSHEPVADNSTVAGRSANRRVEVYILP 209 >gi|77456921|ref|YP_346426.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77380924|gb|ABA72437.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1] Length = 166 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K FE T G +F ++ ++++IG+ L E + + Sbjct: 40 VLKQQGFELTDDGWE---FGLSGKVLFGSDVESLNKQSTEIVERIGKALLGVGIERVRVD 96 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA N +LSL RA S VL G+ ++ I ++ G ++D Sbjct: 97 GHTDA---SGKETYNQQLSLRRAKSVSNVLTSVGMKQENI-QLQGLGSREPVASNDTAAG 152 Query: 330 A--NRRIDILV 338 NRR+ I+V Sbjct: 153 RTENRRVSIVV 163 >gi|313497139|gb|ADR58505.1| OmpA/MotB domain-containing protein [Pseudomonas putida BIRD-1] Length = 239 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F S+ P L + + I + G T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPLNNLAGSFKQFNQNTIEVVGFT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330 D++ + N LS RA + L GV RI + G + ++ N + Sbjct: 158 DST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI-SVRGMGPDQPIASNADANGRAQ 213 Query: 331 NRRIDILVED 340 NRR+++ ++ Sbjct: 214 NRRVEVNLKP 223 >gi|149917241|ref|ZP_01905740.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149821848|gb|EDM81242.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 188 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 14/153 (9%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + AK I +T + E T I+I F+ ++ + +L Sbjct: 20 ESAKVIEATELPPPPEPPKVDARVEVTDDKIVI-----HEKIAFEYDAAKIQRVSHDLLA 74 Query: 254 KIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRIS 310 ++ +V+ + + I + GH A A N LS RA + L+ K GV E R+ Sbjct: 75 EVAQVILDNPRIELIRVEGHASAE---GEADHNLELSQRRAEAVRAHLVKKGGVPEARLE 131 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 GF R ++ NRR++ ++ + Sbjct: 132 A-EGFGEDRPIADNETEEGRGQNRRVEFVIVRQ 163 >gi|71282150|ref|YP_271418.1| ompA family protein [Colwellia psychrerythraea 34H] gi|71147890|gb|AAZ28363.1| ompA family protein [Colwellia psychrerythraea 34H] Length = 367 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++ + ++ K+ + + + ++I+GH+ A + A N LS RA + Sbjct: 256 FDSNKAVVKEKYKPIMVKVAKFMEAYPDLSLTIKGHSSA---KGSAAYNQTLSAKRAQAV 312 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335 VL+ GV R++ I G+ L + + NRRI+ Sbjct: 313 VDVLINDFGVDASRLNSI-GYGESELLNTDNTAAAHEQNRRIE 354 >gi|330831642|ref|YP_004394594.1| outer membrane lipoprotein [Aeromonas veronii B565] gi|328806778|gb|AEB51977.1| Outer membrane lipoprotein [Aeromonas veronii B565] Length = 218 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++G TR G + I++ N FD SSS L + V+A Sbjct: 81 VQEAKLREKLQGTGVSVTRNGNEL-ILNMPNNVTFDSSSSQLKAAGANTLSGVAMVVAEF 139 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ GHTD++ R++ N +LS DRA + L+ GV+ RI +G + Sbjct: 140 DKTRLNVVGHTDSTGSRDL---NMKLSRDRADAVAAQLIGQGVAGSRI-STTGVGPDQPV 195 Query: 322 IASDPMN--SANRRIDILVED 340 + + NRR+ I + Sbjct: 196 ATNSTAAGKAQNRRVTITLTP 216 >gi|255038851|ref|YP_003089472.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951607|gb|ACT96307.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 673 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269 I K + + G I + + MF +SS+ P ++V L +I E + I + Sbjct: 548 IRKNIYLHPIKAGQQIRLSNT----MFSQSSAEVTPASLVELDRIAETMQTYPTMEILLE 603 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMN 328 GHTD + N +LS DR + L+ G+ RI K G A ++ Sbjct: 604 GHTDNQ---GEVQKNVKLSADRVEQVKKYLLSKGIDGRRIQTKAWGPARPIASNLTEQTR 660 Query: 329 SANRRIDILVE 339 NRR++ + Sbjct: 661 QKNRRVEFTIL 671 >gi|126730426|ref|ZP_01746237.1| OmpA domain protein [Sagittula stellata E-37] gi|126709159|gb|EBA08214.1| OmpA domain protein [Sagittula stellata E-37] Length = 718 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 29/278 (10%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS---EH 142 E PE + + + E + D + + K R + S Sbjct: 328 ETTLPEVFALHAVLPKAPEQDAEGPPDFTATLSPEGKVQLRGRLTTEIARQTADSYARAR 387 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + + D S +++ E + + Q ++ S+ Sbjct: 388 FGSEAVYTAARLADNLPSDWPVRTLAGLEALSMLANGSITVTPDDVIVTGQTGNQEASAQ 447 Query: 203 LSGLVADNIVKGVLFET---------------TRT---GILISIIDQRNTPMFDKSSSIP 244 ++ L+A + + F+ T G++ ++ R F+ S+ Sbjct: 448 IATLLAGKLGENATFDINVTYVERLDPTLGIPTPEQCVGMIKEVVGTRKIN-FEPGSATL 506 Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 +L ++ ++L + + I GHTD+ N +LS DRA S L Sbjct: 507 DISARDILDELADLLKTCGDIPLEIGGHTDSQ---GRESMNQQLSRDRAQSVLDALRGRR 563 Query: 304 VSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 V R+ ++ G+ + +D ANRRI+ + Sbjct: 564 V-PVRMYEVKGYGEAQPIADNDTEEGREANRRIEFKLL 600 >gi|167031827|ref|YP_001667058.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166858315|gb|ABY96722.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 240 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 13/212 (6%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 Q + ++ + K L + N Sbjct: 22 SQNPYDNQGQAQGSTGMSKTAKYGGLGALAGAIAGAAIDHNNRGKGALIGAAAVGAAAAG 81 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 A K + L +A E R G I +I F S+ P Sbjct: 82 YGYYADKQEAELRAQMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSP 135 Query: 252 LQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + + I + G TD++ + N LS RA + L GV RI Sbjct: 136 LNNLAGSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI- 191 Query: 311 KISGFAHHRLKIASDPMN--SANRRIDILVED 340 + G + ++ N + NRR+++ ++ Sbjct: 192 SVRGMGPDQPIASNADANGRAQNRRVEVNLKP 223 >gi|325287332|ref|YP_004263122.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322786|gb|ADY30251.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 647 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS E+ L K+ +L + T VI + HTD++ + + W LS RA S Sbjct: 539 FDTNSSYLRVESYPDLDKVANYMLENPTVVIEVGAHTDST--ESDTYNLW-LSNRRAKST 595 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 + L+ GV RI+ I GF +L S+ ++ NRR + ++ ++ Sbjct: 596 VKYLVSKGVDASRITGI-GFGESQLLNKCKNGVKCSNEEHAVNRRSEFIIINK 647 >gi|244538668|dbj|BAH82822.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 18/166 (10%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 YF K LA K+ + AK+I + ++ + E T I + Sbjct: 171 YFGNKTPKAPQLATKQIEEKPQ-AKQIDKSCPEPRKGALLDHIGCEKT-----IML---- 220 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDR 291 F PE +Q++G+VL + + +I GHTD + N +LSL+R Sbjct: 221 -EGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT---GPKAYNQKLSLER 276 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 A + + L K+GV++++I+ G+ + ++D + NRR++ Sbjct: 277 AKAVAKELEKAGVAKEKIT-TKGYGFEKPIASNDTKEGRAQNRRVE 321 >gi|325121508|gb|ADY81031.1| hypothetical protein BDGL_000445 [Acinetobacter calcoaceticus PHEA-2] Length = 475 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS + +L + +L +++ GHTD++ A N LS RA + Sbjct: 373 FASGSSDIPADNKAILDQAATLLNKVNGVKLNVGGHTDST---GNAAANKALSQRRAQAV 429 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L GV ++ G + + NRRI+ V Sbjct: 430 VDYLTSKGVEGSKLVA-QGHGSDQPVAENTTEEGRFKNRRIEFSV 473 >gi|163855060|ref|YP_001629358.1| putative lipoprotein [Bordetella petrii DSM 12804] gi|163258788|emb|CAP41087.1| putative lipoprotein [Bordetella petrii] Length = 215 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 + E + ++I + FD ++ P + VL + L E + GHTD+ Sbjct: 92 VVEMPDGSLKVNI---PSNVSFDTDKAVLKPALLPVLDSVARALNQHPELRAKVVGHTDS 148 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANR 332 + A N LS +RA S L K GV+ R++ I G A A+ +ANR Sbjct: 149 T---GSAAHNQTLSENRARSVTDYLGKQGVAPARMT-IEGRAARDPIGDNATAEGRAANR 204 Query: 333 RIDILV 338 R+++ + Sbjct: 205 RVEVYL 210 >gi|153871249|ref|ZP_02000470.1| outer membrane protein OprF [Beggiatoa sp. PS] gi|152072284|gb|EDN69529.1| outer membrane protein OprF [Beggiatoa sp. PS] Length = 188 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S+ E L + + L + +I I GHTD + N LS R Sbjct: 80 RVYFESDSTRIKAEFYPWLHQYAKTLQSELAETMIEIGGHTDN--IGSDEY-NKDLSQRR 136 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 A + +L+ +S +R+ + G+ ++ ++ + NRR+++ + + Sbjct: 137 AQAVKNILLSKYKISANRLI-VKGYGENQPLDVNENREGRAINRRVELKIVPK 188 >gi|71281842|ref|YP_271675.1| ompA family protein [Colwellia psychrerythraea 34H] gi|71147582|gb|AAZ28055.1| ompA family protein [Colwellia psychrerythraea 34H] Length = 222 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++ R G I++I F SSS VL + VL + + + G Sbjct: 92 LRDSGVSIQREGDKINLI-MPGNITFATSSSNINTNFTGVLNSVALVLEEYNKTLVVVSG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 HTD+ A+ N +LS +RA S L + +R+ + GF + + Sbjct: 151 HTDS---SGSAQYNQKLSEERAGSVANYLRGQKILSERLE-VVGFGEAQPVADNQSAGGR 206 Query: 331 --NRRIDILVED 340 NRR++I + Sbjct: 207 ELNRRVEITLLP 218 >gi|33592100|ref|NP_879744.1| outer membrane protein A precursor [Bordetella pertussis Tohama I] gi|33571744|emb|CAE41245.1| outer membrane protein A precursor [Bordetella pertussis Tohama I] gi|332381516|gb|AEE66363.1| outer membrane protein A precursor [Bordetella pertussis CS] Length = 193 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ A N +LS RA + Sbjct: 86 FFDFDKSTLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAA 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G + ++ + NRR++I +V R+ Sbjct: 143 VKTYLVSKGIDPNRIY-TEGKGELQPIASNKTREGRAQNRRVEIEIVGSRK 192 >gi|255532299|ref|YP_003092671.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345283|gb|ACU04609.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 175 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 14/160 (8%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGV---LFETTRTGILISIIDQRNTPMFDKSSSI 243 K KK L + + + NI + + E T GI + + +F +SS Sbjct: 20 KTKKILAKSPETAETKSTDNEIFNIQRELPGDQVERTAAGIRFTFSSE---ILFPTNSSY 76 Query: 244 PLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 ++ + + +V+ + + + + GH+D + + W LS RA S L+ Sbjct: 77 LNEKSKSRIDDVAKVIRNKYADRKVLVEGHSDKT--GTPEYNLW-LSEKRAASVKTYLVS 133 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 G+ E I K SG R + NRR+++ V Sbjct: 134 LGIPEANI-KTSGLGDTRPVADNKTKEGRLINRRVEVTVL 172 >gi|253572950|ref|ZP_04850347.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254885124|ref|ZP_05257834.1| lipoprotein PG3 [Bacteroides sp. 4_3_47FAA] gi|251837477|gb|EES65571.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254837917|gb|EET18226.1| lipoprotein PG3 [Bacteroides sp. 4_3_47FAA] Length = 213 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 6/187 (3%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + +D EK + + + + + +++R + + +KI + + L A + + + Sbjct: 30 AELSDKEKDMIENNSNYSTASIVGGSAKLVKEERDKAIQEKIEARRNKLKAIDGLS-ISS 88 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 + G ++ +F S E +L + ++ I I GHTD Sbjct: 89 YKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSNLCNIITEIPNTKIKIIGHTDNI- 147 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK-ISGFAHHRLKIASDPMNSANRRID 335 + N LS +RA + L +G+ + I++ G++ S+ + NRR++ Sbjct: 148 --GEKQYNIILSKNRAAAVGNYLRTAGIETNNITEDGKGYSEPIADNTSEAGRAKNRRVE 205 Query: 336 ILVEDRQ 342 I + + + Sbjct: 206 IFITNDE 212 >gi|238028341|ref|YP_002912572.1| OmpA family protein [Burkholderia glumae BGR1] gi|237877535|gb|ACR29868.1| OmpA family protein [Burkholderia glumae BGR1] Length = 219 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L ++ L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATDQYAITPAFAPLLNELATSLNQNPQITASVVGYTDST---GSAAHNLTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L++ GV+ R+S G A+D + NRR++I + Sbjct: 165 VTALVQRGVAGSRLSA-QGMGASNPVADNATDAGRAQNRRVEIYL 208 >gi|33597667|ref|NP_885310.1| outer membrane protein A precursor [Bordetella parapertussis 12822] gi|33602447|ref|NP_890007.1| outer membrane protein A precursor [Bordetella bronchiseptica RB50] gi|33574095|emb|CAE38420.1| outer membrane protein A precursor [Bordetella parapertussis] gi|33576886|emb|CAE33966.1| outer membrane protein A precursor [Bordetella bronchiseptica RB50] Length = 193 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ A N +LS RA + Sbjct: 86 FFDFDKSTLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAA 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G + ++ + NRR++I +V R+ Sbjct: 143 VKTYLVSKGIDPNRIY-TEGKGELQPIASNKTREGRAQNRRVEIEIVGSRK 192 >gi|260905077|ref|ZP_05913399.1| flagellar motor protein [Brevibacterium linens BL2] Length = 228 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 39/203 (19%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + +K + + + K RK L ++ K + S +G+ Sbjct: 18 QLMQAQKDFQAQTDDLSEQIEKSSKAENIRKSMLDEIQKDLES-----------EGIEVI 66 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIR 269 ++ G +ISI + FD S + IG ++A E + + Sbjct: 67 VSQNGSVISI--PNDLLGFDSGSYDIKEKYEAKSLTIGTIIAREIEEHDGEEFLDTVFVE 124 Query: 270 GHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDR------------ISKISGFA 316 GHTD + ++ + NW LS RA S ++ L + + D+ + +SG++ Sbjct: 125 GHTDNAKYQGLEGTGNWGLSTFRAISLWK-LWEEELPSDQQLETMQGPEGQPLFSVSGYS 183 Query: 317 HHRLKIAS---DPMNSANRRIDI 336 R A+ D +ANRRIDI Sbjct: 184 DTRPVNANQSTDLGAAANRRIDI 206 >gi|72161966|ref|YP_289623.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Thermobifida fusca YX] gi|71915698|gb|AAZ55600.1| similar to Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Thermobifida fusca YX] Length = 521 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 21/200 (10%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 ++T + D + + + + PP + EK+ R+ + A + + Sbjct: 163 GAMTGIPVQDVDEERPEPENPNGGQHLSVDQPPAAGEKLTFDNRRP--DEDAVAVEGWVE 220 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 V I TT T IS+ MF+ + PE V+++ E L + + Sbjct: 221 SFVDSEIASVTRDGTTET---ISLHSD---VMFEFDRADLTPEAEAVVRRAAETLERNVD 274 Query: 265 V----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I I GHTD A ++ LS+ RA + +L++ + + G Sbjct: 275 PDHPEIIIIGHTDG--IGTDAYND-DLSVRRAETVRNLLVEE-MGTGYTYVVEGRGSREP 330 Query: 321 KIA-----SDPMNSANRRID 335 + + NRR++ Sbjct: 331 IAREGGPDDEQARARNRRVE 350 >gi|308048148|ref|YP_003911714.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307630338|gb|ADN74640.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 219 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + G R G I ++ N+ FD S I L + V++ E + I Sbjct: 89 EKLAGTGVSVKRDGDHIQLV-MPNSLTFDVGSDRLKMPAINALSGVAMVVSEFDETNLQI 147 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD++ R++ N RLS +RA + L++ +S R+ G R ++ + Sbjct: 148 TGHTDSTGGRDL---NMRLSRERAEAVASELLRQSISATRM-STYGAGPDRPIASNQSEA 203 Query: 327 MNSANRRIDILVEDR 341 + NRR++I++ R Sbjct: 204 GRAENRRVEIVLTPR 218 >gi|300727039|ref|ZP_07060458.1| immunogenic 23 kDa lipoprotein PG3 [Prevotella bryantii B14] gi|299775583|gb|EFI72174.1| immunogenic 23 kDa lipoprotein PG3 [Prevotella bryantii B14] Length = 229 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 6/136 (4%) Query: 205 GLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +A + + E T G+ + + FD S L K L + Sbjct: 82 AEIAQQVSNAKVEEVTDANGLKAIKVTFDSGLQFDLGKSTLKSAAKNDLAKFASTLKNDP 141 Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I+G+TDA+ N LS RA + L+ GVS + ++G+A + Sbjct: 142 MLAVDIQGYTDAT---GGDAINLPLSDKRAKAVSSYLVSQGVSSSQFKNVAGYASANPIV 198 Query: 323 ASDPMNSANRRIDILV 338 + + NRR+++ + Sbjct: 199 -NATVAPENRRVEVYL 213 >gi|244538673|dbj|BAH82826.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 21/167 (12%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 P + ++ K + AK+I + ++ + E T I + Sbjct: 173 GNKTPKAPQLATNQIEEKPQ----AKQIDKSCPEPRKGALLDHIGCEKT-----IML--- 220 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 F PE +Q++G+VL + + +I GHTD + N +LSL+ Sbjct: 221 --EGHFGFDQITVNPEFAQKIQEVGKVLEENPQYYTILEGHTDNT---GPKAYNQKLSLE 275 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 RA + + L K+GV++++I+ G+ + ++D + NRR++ Sbjct: 276 RAKAVAKELEKAGVAKEKIT-TKGYGFEKPIASNDTKEGRAQNRRVE 321 >gi|303240559|ref|ZP_07327075.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] gi|302591961|gb|EFL61693.1| OmpA/MotB domain protein [Acetivibrio cellulolyticus CD2] Length = 556 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 21/157 (13%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + ++ K+ + + N + + +D + E+I Sbjct: 417 QAEEKKKEFKQQDAQSIEKNTERVAKVDIPP-------------VYYDSGKATVKAESIA 463 Query: 251 VLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 VL ++ E+L+ + I HTD +N +LS DRA + L++ GV E RI Sbjct: 464 VLNQVKEMLSQFPEYYLIIDAHTDTV---GNNENNLKLSKDRADEVKKYLVQKGVDEKRI 520 Query: 310 SKISGFAHHRLKIASDPMN---SANRRIDILVEDRQG 343 G+ R + + + NRR + ++ G Sbjct: 521 IA-RGWGEDRPIVPKESTEGDKAKNRRTEFILTREIG 556 >gi|134095751|ref|YP_001100826.1| putative outer membrane protein 3a (II*;G;d) [Herminiimonas arsenicoxydans] gi|133739654|emb|CAL62705.1| Putative outer membrane protein OmpA [Herminiimonas arsenicoxydans] Length = 205 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 ++ P+ L + L + I GHTD+ + A N +LS+ RA + L Sbjct: 104 KAVLKPDGKAKLDDLASKLKDLNLEVIIAVGHTDS--IGSDAY-NQKLSIRRAEAVKGYL 160 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342 + G+ R+ G + + + NRR++I +V R+ Sbjct: 161 VGKGIDAKRVY-TEGKGEKQPVATNKTAAGRAQNRRVEIEVVGTRK 205 >gi|221199341|ref|ZP_03572385.1| ompA family protein [Burkholderia multivorans CGD2M] gi|221205757|ref|ZP_03578772.1| ompA family protein [Burkholderia multivorans CGD2] gi|221211556|ref|ZP_03584535.1| inner membrane lipoprotein YiaD [Burkholderia multivorans CGD1] gi|221168917|gb|EEE01385.1| inner membrane lipoprotein YiaD [Burkholderia multivorans CGD1] gi|221174595|gb|EEE07027.1| ompA family protein [Burkholderia multivorans CGD2] gi|221180626|gb|EEE13029.1| ompA family protein [Burkholderia multivorans CGD2M] Length = 214 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + S+ G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASVIGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ +R+S G +++ + NRR++I + Q Sbjct: 165 VNALVQRGVAGNRLSA-QGMGPSNPVADNSTEAGRAQNRRVEIYLRAPQ 212 >gi|161524037|ref|YP_001579049.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189351202|ref|YP_001946830.1| putative OmpA family transmembrane protein [Burkholderia multivorans ATCC 17616] gi|160341466|gb|ABX14552.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|189335224|dbj|BAG44294.1| putative OmpA family transmembrane protein [Burkholderia multivorans ATCC 17616] Length = 214 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + S+ G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASVIGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ +R+S G +++ + NRR++I + Q Sbjct: 165 VNALVQRGVAGNRLSA-QGMGPSNPVADNSTEAGRAQNRRVEIYLRAPQ 212 >gi|307578587|gb|ADN62556.1| OmpA family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 240 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S+ P+ L+ + L + +I + G+T Sbjct: 104 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D+ N RLS DRA + L GV +R+ ISG +++ S Sbjct: 163 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 218 Query: 331 NRRIDILVED 340 NRR++I + Sbjct: 219 NRRVEIHLIP 228 >gi|157889016|dbj|BAF80962.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 19/161 (11%) Query: 180 KEKILAMKRKKRLQD--LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 K K++++ K+I + ++ + E T I F Sbjct: 175 KAPKTPQTTTKQIEEKPQTKQIDKSCPEPRKGALLDHIGCEKT--------IALEGYFGF 226 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY 296 D+ S PE +Q++G+VL + + +I GHTD++ N +LSL+RA + Sbjct: 227 DQIS--INPEFAQKIQEVGKVLEENPQYYTILEGHTDST---GSKTYNQKLSLERAKAVA 281 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L KSGV +++I G+ + K ++D + NRR++ Sbjct: 282 KELEKSGVVKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|226944423|ref|YP_002799496.1| major outer membrane porin OprF [Azotobacter vinelandii DJ] gi|226719350|gb|ACO78521.1| major outer membrane porin OprF [Azotobacter vinelandii DJ] Length = 351 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + E+ ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 245 FDFDKAQVKEESYADIKNLADFMKQYPQTNTTVEGHTDSV---GTDAYNQKLSERRANAV 301 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL+ + GV R+ + G+ R A++ + NRR++ Sbjct: 302 RDVLVNEYGVQGSRVDSV-GYGESRPVADNATESGRAINRRVE 343 >gi|317502696|ref|ZP_07960808.1| immunogenic lipoprotein PG3 [Prevotella salivae DSM 15606] gi|315666182|gb|EFV05737.1| immunogenic lipoprotein PG3 [Prevotella salivae DSM 15606] Length = 225 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 208 ADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 A I + E T G+ + + +F + + + L K +VL +++ Sbjct: 77 AAQIRNAKVEEVTDANGLKAVKVTFDSGILFATNQATLTASSKNDLVKFSKVLKDNSDCH 136 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I GHTD + N LS RA S L GVS + + G + Sbjct: 137 VDIYGHTDNT---GNDAINIPLSNRRAESVVNYLKSCGVSSSQFQNVVGKGSSEPVADNS 193 Query: 326 PMNSA--NRRIDILV 338 NRR+++ + Sbjct: 194 TAAGRKQNRRVEVYL 208 >gi|187251342|ref|YP_001875824.1| outer membrane protein [Elusimicrobium minutum Pei191] gi|186971502|gb|ACC98487.1| Outer membrane protein [Elusimicrobium minutum Pei191] Length = 217 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 9/138 (6%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266 A + E G + I+ +N +F S+ + I + + +V +I Sbjct: 77 AKELAAIATVERNADGSIRVIM--KNDILFATGSAELSSQAINDIAAMSKVFKKYPYNII 134 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + GHTD++ A N LS +RA + Y L+ + V I G+ ++D Sbjct: 135 VVEGHTDST---GSASFNQTLSENRARAVYNQLIANNVKTYSIG-YRGYGASNPIASNDT 190 Query: 327 --MNSANRRIDILVEDRQ 342 + NRR+ + ++ + Sbjct: 191 AAGRAQNRRVTLNIKADK 208 >gi|297538022|ref|YP_003673791.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297257369|gb|ADI29214.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 616 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S+ + VL L + + GHTD N RLS RA + Sbjct: 510 FETNSAKIKEISYPVLDNAINTLKEWGDSNVEVGGHTDQRDTSKADY-NQRLSEKRAKAV 568 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++K G+ R+S G+ + + +DP N NRR++++ E ++ Sbjct: 569 MDYIVKKGIDAKRLSA-KGYGYSKPIAENDPKEGNLVNRRVELVREQKK 616 >gi|169123287|gb|ACA47115.1| OmpF [Pseudomonas putida] Length = 343 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 237 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 293 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R ++ + NRR++ Sbjct: 294 KQVLTNQYGVESSRVQSV-GYGESRPVADNKTEAGRAVNRRVE 335 >gi|326773950|ref|ZP_08233232.1| hypothetical protein HMPREF0059_02356 [Actinomyces viscosus C505] gi|326636089|gb|EGE36993.1| hypothetical protein HMPREF0059_02356 [Actinomyces viscosus C505] Length = 569 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ P L + L ++I GHTD ++ A N LS RA + Sbjct: 276 FASDSADLAPGAEAQLNTVASQLGQYPDGGTLTIVGHTDD--VQDDAY-NQTLSEKRANA 332 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L + + + +SG KI D +ANRR++I Sbjct: 333 VKTRLAQLTKLDKWQTSVSGKGESEPKIKDTTDEARAANRRVEI 376 >gi|71276562|ref|ZP_00652836.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Xylella fastidiosa Dixon] gi|71900206|ref|ZP_00682345.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|170730945|ref|YP_001776378.1| OmpA family protein [Xylella fastidiosa M12] gi|182682310|ref|YP_001830470.1| OmpA/MotB domain-containing protein [Xylella fastidiosa M23] gi|71162633|gb|EAO12361.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Xylella fastidiosa Dixon] gi|71730039|gb|EAO32131.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|167965738|gb|ACA12748.1| OmpA family protein [Xylella fastidiosa M12] gi|182632420|gb|ACB93196.1| OmpA/MotB domain protein [Xylella fastidiosa M23] Length = 241 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S+ P+ L+ + L + +I + G+T Sbjct: 105 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 163 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D+ N RLS DRA + L GV +R+ ISG +++ S Sbjct: 164 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 219 Query: 331 NRRIDILVED 340 NRR++I + Sbjct: 220 NRRVEIHLIP 229 >gi|300313508|ref|YP_003777600.1| hypothetical protein Hsero_4223 [Herbaspirillum seropedicae SmR1] gi|300076293|gb|ADJ65692.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 161 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 16/116 (13%) Query: 237 FDKSSSIPLPETIVVL----QKIGEVLAHST-EVISIRGHTDASPFR----------NIA 281 F + S+ E ++I E L + I + GHTD P + + Sbjct: 37 FRRGSACVESEAKAAFAQVEERIAEYLQQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVY 96 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSANRRIDI 336 DN LS RA A +L+ E R ++G+ + + NRR+++ Sbjct: 97 DDNITLSAARARQARLLLVGRSSPEAARRVIVAGYGDSQPLPGLAASDERNRRVEV 152 >gi|293603504|ref|ZP_06685926.1| OmpA family protein [Achromobacter piechaudii ATCC 43553] gi|292818090|gb|EFF77149.1| OmpA family protein [Achromobacter piechaudii ATCC 43553] Length = 210 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 224 ILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + I +++ + + FD + P + VL + L E + GHTD Sbjct: 83 LGIDVVEMPDGSLKVNIPSGVSFDTDKTQLKPALLPVLDSVARSLNQHPELRAKVVGHTD 142 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331 ++ N LS++RA S L K GV+ R+ I G A+ + N Sbjct: 143 ST---GALAHNQTLSVNRARSVTDYLAKQGVAATRL-AIEGRGPSDPIGDNATAEGRALN 198 Query: 332 RRIDILV 338 RR++I + Sbjct: 199 RRVEIYL 205 >gi|255019372|ref|ZP_05291483.1| outer membrane porin OprF [Acidithiobacillus caldus ATCC 51756] gi|254971192|gb|EET28643.1| outer membrane porin OprF [Acidithiobacillus caldus ATCC 51756] Length = 226 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P+ + + ++ + + + ++ I + GHTD N +LS RA + Sbjct: 39 FDYNKATLRPDALKTVGELAQTMRQNPQLFIGLDGHTDNI---GGTDFNQKLSEARANAV 95 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L+ G+ RI G + A+D + NRR++++ Sbjct: 96 KAALVAQGIDASRI-ATRGLGATQPVADNATDAGRAKNRRVEVV 138 >gi|28199574|ref|NP_779888.1| OmpA family protein [Xylella fastidiosa Temecula1] gi|28057689|gb|AAO29537.1| OmpA family protein [Xylella fastidiosa Temecula1] Length = 242 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S+ P+ L+ + L + +I + G+T Sbjct: 106 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 164 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D+ N RLS DRA + L GV +R+ ISG +++ S Sbjct: 165 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 220 Query: 331 NRRIDILVED 340 NRR++I + Sbjct: 221 NRRVEIHLIP 230 >gi|317402399|gb|EFV82971.1| OmpA family protein [Achromobacter xylosoxidans C54] Length = 232 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 19/141 (13%) Query: 213 KGVLFETTRTG---ILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLA 260 K V + R+G + I +++ + + FD + P + VL + L Sbjct: 91 KVVKDDVQRSGATSLGIDVVEMPDGSLKVNIPSNVSFDTDKTDLKPALLPVLDSVARSLN 150 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 E + GHTD++ N LS++RA S L + GV+ R+ + G Sbjct: 151 QHPELRAKVVGHTDST---GALAHNQTLSVNRARSVTDYLSRQGVAATRL-SVEGRGPSD 206 Query: 320 LK--IASDPMNSANRRIDILV 338 A+ + NRR+++ + Sbjct: 207 PIGDNATAEGRALNRRVEVYL 227 >gi|322418016|ref|YP_004197239.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320124403|gb|ADW11963.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 459 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ E + + + + I GHTD N LS RA + Sbjct: 228 FDIDRAVIRQENKDEIAVVCDFMKKYPTTTAVIEGHTDNV---GAPEYNLDLSKRRAQAV 284 Query: 296 YQVLMKS-GVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339 L+ G+ R+ ++ G A +D ANRRI+ +++ Sbjct: 285 VDYLVTDCGIDRSRLEARGFGMARPVAPNTTDEGRQANRRIEAIID 330 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + K+ + + I GHTD N +LS +RA SA Sbjct: 352 FDTGKADIGPQYKGEMAKVADYMKQYPTTTAVIEGHTDNV---GGYEYNMKLSRERAESA 408 Query: 296 YQVLMKS-GVSEDRISKISGFAHHR--LKIASDPMNSANRRIDILVE 339 + L+ + G+ + R+S G+ + R + + NRRI+ +++ Sbjct: 409 VRYLVDNFGIEKSRLSA-KGYGYTRRVAYNRTAEGRAKNRRINAIID 454 >gi|77359154|ref|YP_338729.1| hypothetical protein PSHAa0183 [Pseudoalteromonas haloplanktis TAC125] gi|76874065|emb|CAI85286.1| putative outer membrane protein; signal peptide [Pseudoalteromonas haloplanktis TAC125] Length = 354 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++S + + + K+ E L + + + GHT + + + W LS RA + Sbjct: 244 FPNNTSAVSTQYLNDIDKVAEFLKEYPDTTVLLEGHTSS--VGKASYNKW-LSKKRADAV 300 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 + L+ GV+EDRI+ + G RLK ++ + NRR++ ++ + Sbjct: 301 AKKLVADGVAEDRITTV-GLGEERLKNEANTKAAHEENRRVEAHIKTIK 348 >gi|308186600|ref|YP_003930731.1| type VI secretion system, core protein [Pantoea vagans C9-1] gi|308057110|gb|ADO09282.1| Putative type VI secretion system, core protein [Pantoea vagans C9-1] Length = 405 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 14/169 (8%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 Y P + L DL ++++ ++ + G + I + Sbjct: 234 YQTPLPQITAGRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291 +F + ++ P +L ++ + I + TD P N ++ S R Sbjct: 287 ---LFAEQGTVINPVGRALLARVSTAMKDVKGTILVSVFTDDHPVDNSRFASSYEFSFAR 343 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 A + Q+L + + + G + +D + NRR++I + Sbjct: 344 ARAITQLLQLQ-LEDGHTVRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391 >gi|170720793|ref|YP_001748481.1| OmpF family protein [Pseudomonas putida W619] gi|169758796|gb|ACA72112.1| OmpF family protein [Pseudomonas putida W619] Length = 345 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 239 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 295 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 +VL + GV R+ + G+ R A++ + NRR++ Sbjct: 296 KEVLTQQYGVESTRVDSV-GYGETRPVADNATEDGRAVNRRVE 337 >gi|4580968|gb|AAD24555.1|AF117963_1 OprF [Pseudomonas cichorii] Length = 346 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 240 FDFDKAVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRASAV 296 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV +R++ + G+ R A++ + NRR++ Sbjct: 297 KQVLVNQYGVGANRVNSV-GYGETRPVADNATEAGRAVNRRVE 338 >gi|319953135|ref|YP_004164402.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319421795|gb|ADV48904.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 683 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 15/193 (7%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 ++ K ++E + + + K+ + RK+ ++L + +++ + + +K Sbjct: 494 ENNIKLKEIESADDGSFVFEDLEGDKKYTIKTNRKEYFEELKEVMTTLNDTEIVEVSLKK 553 Query: 215 V-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + GI D F+ S + L K+ EV++ E VI I HT Sbjct: 554 LKELIVVEDGIRKLKTDM---IYFNFDKSFIREDASKELNKLVEVMSEYPEMVIKIESHT 610 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD------- 325 D+ R + N LS RA S+ ++ G+ DRI G+ RL D Sbjct: 611 DS---RGASDYNRYLSDKRAKSSRDYIISQGIDADRIESAIGYGEDRLLNDCDGSVKCTR 667 Query: 326 PMNSANRRIDILV 338 + NRR + ++ Sbjct: 668 EKHELNRRSEFII 680 >gi|163755660|ref|ZP_02162779.1| OmpA/MotB [Kordia algicida OT-1] gi|161324573|gb|EDP95903.1| OmpA/MotB [Kordia algicida OT-1] Length = 635 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 10/120 (8%) Query: 225 LISIIDQ---RNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 +++I D FD SS +L I L + ISI GH D+ R Sbjct: 515 VVTIPDPAVGERKVYFDFDSSKLDKNAKEILDNIAANLKNDAGYNISIIGHADS---RGT 571 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 R N +LS++RA L +S I+ I+G + + NRR+++++ Sbjct: 572 DRYNDKLSIERAQVIKNYLDSKKLSNSNIT-ITGKGESAPIAPNTTPEGRAKNRRVELII 630 >gi|262280028|ref|ZP_06057813.1| OmpA/MotB domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262260379|gb|EEY79112.1| OmpA/MotB domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 217 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 18/191 (9%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + KS + +L L KK+ ++G GV Sbjct: 41 GAAAGYGISKSNANSSGQNNRAAAIGAVLGAAGGVYLDQKEKKLRQQMAGT-------GV 93 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTD 273 G + I+ + FD + S P L K+ + LA I + G+TD Sbjct: 94 DVGRNPDGSVQLIM--PGSITFDTNKSNIKPNFYSTLDKVAQTLAE-DNKSAILVTGYTD 150 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 + N LS RA S L G+S RI G+ + + N Sbjct: 151 NT---GNDSINIPLSQSRAQSVKNYLAGKGLSSSRIDA-QGYGSSNPIADNSTASGREQN 206 Query: 332 RRIDILVEDRQ 342 RR++I + +Q Sbjct: 207 RRVEISIYAKQ 217 >gi|332561151|ref|ZP_08415469.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332274949|gb|EGJ20265.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 254 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 24/249 (9%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P ++ D + + + + + + + +SL Sbjct: 23 PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAVADVPDSLG 82 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + L + E + + L LA ++S GL+ Sbjct: 83 APAGEDPGLRPTASTESAPGETGRPVLGLPQGADRLAAADPPPEGRETAEVSPESFGLLD 142 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267 + V F S++ + +L ++ V+ S + Sbjct: 143 PALQVNVRIH------------------FAFDSAVLAADQTPLLAQLCTVMKASDIRLFQ 184 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326 I GHTDA N +LSL RA + L G++ +R+ + G L SDP Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLTNQSDP 240 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 241 RSGENRRVE 249 >gi|242313779|ref|ZP_04812796.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|242137018|gb|EES23421.1| OmpA family protein [Burkholderia pseudomallei 1106b] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|91975492|ref|YP_568151.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91681948|gb|ABE38250.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 217 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 37/212 (17%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + N+ Q+ RD KG + +++ EE + +S+ + L+ + Sbjct: 29 GLAINPNAAQAGEVSAQQIRDQLKGAKTRSLSGARAAVSPEELATVKRISQIRSLSAGDR 88 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +++ +A K R I + I FD +S+ P Sbjct: 89 EQMAAIAAK----------------------RPAIDLEIN-------FDYNSAALTPRAE 119 Query: 250 VVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VS 305 L+ +G+ L S + + GHTDA + N LS RA S + L+ + Sbjct: 120 PQLKSLGDALISSDLKDSIVMLAGHTDA---KGGDDYNQTLSERRAESVKRYLIDRYSIR 176 Query: 306 EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 D + + G+ +LK SDP+ + NRR+ I+ Sbjct: 177 PDHLVAV-GYGKKQLKDPSDPLGAENRRVQIV 207 >gi|167572326|ref|ZP_02365200.1| hypothetical protein BoklC_20981 [Burkholderia oklahomensis C6786] Length = 470 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + P+ + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 279 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 338 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L + + R + SG + + + NRR+D+L Sbjct: 339 ADELRATALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 391 >gi|26987509|ref|NP_742934.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|24982176|gb|AAN66398.1|AE016267_7 OmpA family protein [Pseudomonas putida KT2440] Length = 236 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 13/211 (6%) Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 Q + ++ + K L + N Sbjct: 20 QNPYDNQGQAQGSTGMSKTAKYGGLGALAGAIAGAAIDHNNRGKGALIGAAAVGAAAAGY 79 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 A K + L +A E R G I +I F S+ P L Sbjct: 80 GYYADKQEAELRAQMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPL 133 Query: 253 QKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + I + G TD++ + N LS RA + L GV RI Sbjct: 134 NNLAGSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSTYLTSQGVDASRI-S 189 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDILVED 340 + G + ++ N + NRR+++ ++ Sbjct: 190 VRGMGPDQPIASNADANGRAQNRRVEVNLKP 220 >gi|118588924|ref|ZP_01546331.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614] gi|118438253|gb|EAV44887.1| hypothetical protein SIAM614_12768 [Stappia aggregata IAM 12614] Length = 234 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ P L++ + + I GHTD N RLS DRA Sbjct: 131 FEYASARLSPSAQANLREFAKGINDPDLAKATFVIEGHTDGI---GSTSYNQRLSEDRAQ 187 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + Q L+ GVS DR+ ++ + R K+A D + ANRR++ Sbjct: 188 AVTQFLVNLGVSRDRLKTVA-YGETRPKVA-DVNDPANRRVE 227 >gi|71901865|ref|ZP_00683927.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|71728370|gb|EAO30539.1| OmpA/MotB [Xylella fastidiosa Ann-1] Length = 241 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S+ P+ L+ + L + +I + G+T Sbjct: 105 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 163 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D+ N RLS DRA + L GV +R+ ISG +++ S Sbjct: 164 DSI---GSDVVNQRLSEDRAGAVASYLAAQGVQRERME-ISGMGKRYPIADNSTEAGRSK 219 Query: 331 NRRIDILVED 340 NRR++I + Sbjct: 220 NRRVEIHLIP 229 >gi|315078400|gb|EFT50431.1| OmpA family protein [Propionibacterium acnes HL053PA2] Length = 368 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S + L I+ ++ G ++D NR Sbjct: 304 --SGSASHNLDLSRRRAASVAKGL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 360 RVTITVKE 367 >gi|298291414|ref|YP_003693353.1| OmpA/MotB domain protein [Starkeya novella DSM 506] gi|296927925|gb|ADH88734.1| OmpA/MotB domain protein [Starkeya novella DSM 506] Length = 202 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 11/160 (6%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN---TPMFD 238 + + Q+ + L + + V + ++ + + F Sbjct: 39 QQILQGLTATTQEEPTITAQLLRQMAEQAVANNVPLDLNKSAVAAQLFKLAQITVQIQFA 98 Query: 239 KSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 S I PE+ + I + L H I G+TD + +N +LS RA + Sbjct: 99 LGSDIIRPESYATIGAISDALHHPILFNYHFLIVGNTDTT---GTRANNLKLSQARADAV 155 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 Q L+ GV R+ + G L+ +DP N NRR+ Sbjct: 156 KQALVTVFGVDPARLEAV-GLGQEDLQTPNDPTNPINRRV 194 >gi|188995861|ref|YP_001930113.1| immunoreactive 23 kDa antigen [Porphyromonas gingivalis ATCC 33277] gi|188595541|dbj|BAG34516.1| immunoreactive 23 kDa antigen [Porphyromonas gingivalis ATCC 33277] Length = 223 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 17/154 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ + V +T G I ++ + +F +SS P + Sbjct: 70 KKMDKQKKELEAA---------VPDATIQTVNDGEAI-LVTFDSGILFATNSSTLSPNSR 119 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K + + + I I GHTD + + N LS RA S Y L GVS R Sbjct: 120 TALTKFAANMNKNPDTDIRIVGHTDNT---GSDKINDPLSERRAASVYSFLNSQGVSMSR 176 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 ++ G H + SANRR+++ + Sbjct: 177 MAA-EGRGSHEPVADNSTVAGRSANRRVEVYILP 209 >gi|254283478|ref|ZP_04958446.1| OmpA family protein [gamma proteobacterium NOR51-B] gi|219679681|gb|EED36030.1| OmpA family protein [gamma proteobacterium NOR51-B] Length = 199 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 19/175 (10%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR------TGILISIIDQ- 231 S+ I ++ L + +K ++ S + D+I + +T R G+ + D Sbjct: 6 SQAGIRVIESDSELTAVRRKTAAKHSPVDTDSIGYYLDVQTARLQALAREGVSVERRDDH 65 Query: 232 -----RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 T F S++ + +L + VL + I I GH+D+ + N Sbjct: 66 LLIVMPGTASFASDSALLKSNMLGLLDDLSTVLQEFNKSLIFIGGHSDSL---GDSGYNL 122 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 LS RA + L K G+ R+ + GF + +D + NRRI++ V Sbjct: 123 YLSRQRALAVGTHLSKVGIDSWRLV-VRGFGDAKPIATNDTESGRAGNRRIELTV 176 >gi|317402977|gb|EFV83516.1| outer membrane protein A [Achromobacter xylosoxidans C54] Length = 197 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ A N +LS RA S Sbjct: 91 FFDFDKSTLKPEGRQLLDQVAQQARGIELETIIAVGHTDS--IGTDAY-NQKLSERRAAS 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G ++ + NRR++I +V R+ Sbjct: 148 VKAYLVSKGIDPNRIY-TEGKGEKNPIASNKTKEGRAQNRRVEIEIVGSRK 197 >gi|170723577|ref|YP_001751265.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169761580|gb|ACA74896.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 240 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 13/208 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +SQ ++ + K L + + Sbjct: 27 DSQGQAQGGSTGMSKTAKYGGLGALAGAIAGAAIDHDNRGKGALIGAAAVGAAAAGYGYY 86 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A K + L +A E R G I +I F S+ P L + Sbjct: 87 ADKQEAELRAQMA-----NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYSPLNNL 140 Query: 256 GEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + I + G TD++ + N LS RA + L GV R+ + G Sbjct: 141 ATSFKQFNQNTIEVVGFTDST---GSRQHNMDLSQRRAQAVSAYLTSQGVDASRV-SVRG 196 Query: 315 FAHHRLKIASDPMN--SANRRIDILVED 340 + ++ N + NRR+++ ++ Sbjct: 197 MGPDQPIASNADANGRAQNRRVEVNLKP 224 >gi|46578466|ref|YP_009274.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46447877|gb|AAS94533.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232394|gb|ADP85248.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 364 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 S ++++ + D + + + L + +G + G + I+ Sbjct: 62 MQTGSGEASGDRLVPLTDPDAQHDARRDLGPLKATL---DGAQGKGVDFFDNG-NVQILS 117 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--------- 281 +F + E +L L + + GH ASP R+ Sbjct: 118 IDADVLFGPGETRLSKEGERLLATFAPTLRTIEHPLLVAGH--ASPPRDEQGAGFRLRAE 175 Query: 282 ---RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 +W LSL RA S Y+ L GV R+ + GF + + ANRR+D+ Sbjct: 176 GTLSPSWMLSLRRATSVYRALRDLGVPSSRLI-LEGFGDGHPRHDAFTATGRRANRRVDL 234 Query: 337 LVEDR 341 +++ R Sbjct: 235 VLDKR 239 >gi|326336372|ref|ZP_08202543.1| lipoprotein PG3 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691546|gb|EGD33514.1| lipoprotein PG3 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 231 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 17/180 (9%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S E + + ++ AKKI + G + GI+ Sbjct: 54 SGGNSELGAVIGTAVGGAAGAIIGNQMDRQAKKIEEEIPGA---------EVKRVDDGIV 104 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 ++ D+++ F+ + + E +L K+ VL + + + GHTD++ A N Sbjct: 105 VT-FDEKSGVTFEFNKATLTSEAQTILNKMVSVLKEYPDTNVIVAGHTDST---GKAAYN 160 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 LS RA + +G++ R + F + ++ + NRR+++++ + Sbjct: 161 MTLSEKRAKAVTNFFTTNGLNASRFT-TKWFGATQPAYDNSTAEGRAKNRRVNVVIVPNE 219 >gi|281420329|ref|ZP_06251328.1| lipoprotein PG3 [Prevotella copri DSM 18205] gi|281405631|gb|EFB36311.1| lipoprotein PG3 [Prevotella copri DSM 18205] Length = 248 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + S L + VL ++T+ +SI+G+TDA+ I N LS RA + Sbjct: 132 LFPTNGSTLSSSAKTDLAQFAGVLKNNTDCEVSIQGYTDATGNDGI---NLPLSQKRAEA 188 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 Y L GV+ ++ + GF + + + NRR+++ + Q Sbjct: 189 VYNYLASCGVTSRQVKNVQGFGSANPVVNTTAACAQNRRVEVYMYASQA 237 >gi|262373433|ref|ZP_06066711.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205] gi|262311186|gb|EEY92272.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205] Length = 159 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++K F T G + + +FD + S PE + ++ + L + I Sbjct: 33 KMLKKEGFVLTEEGWSLGL---PERLLFDFNKSDIKPENGKEIIRLAKQLNKYDLQKLKI 89 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD N N +LS +RA S + + G + ++ + G ++ + + D Sbjct: 90 VGHTDD--IGNPEY-NQKLSEERAQSVAGIFLNEGFKQTNLN-VIGRGSNQPFVPNTSDE 145 Query: 327 MNSANRRIDILVED 340 ++NRR+ I++ Sbjct: 146 NRASNRRVAIIIIP 159 >gi|217423098|ref|ZP_03454600.1| OmpA family protein [Burkholderia pseudomallei 576] gi|217394006|gb|EEC34026.1| OmpA family protein [Burkholderia pseudomallei 576] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|160898923|ref|YP_001564505.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1] gi|160364507|gb|ABX36120.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1] Length = 168 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVI 266 +++ F G + + +F S+ + + ++G L E + Sbjct: 43 QQQLLRSQGFAQADQGWELQMS---GKLLFGFDSAEVGAQARTKVLELGRALKGVGIERL 99 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + GHTD R N RLSL RA + VL ++G++ I + G + SD Sbjct: 100 RVEGHTDD---RGSDAYNMRLSLRRAEAVADVLAEAGLARQDIE-VKGLGRAMPVVPSD- 154 Query: 327 MNSANRRIDILV 338 + NRR+ I+V Sbjct: 155 -AAENRRVAIVV 165 >gi|260767782|ref|ZP_05876717.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972] gi|260617291|gb|EEX42475.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972] Length = 332 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + ++ F +S+ E L + L + + I GHTD++ N +L Sbjct: 215 FQKLDSKSFAHNSAKMSEEGKAQLGDLVAFLNEHPQANVEITGHTDST---GAEAYNQKL 271 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S RA L + G+ RI+ G ++ NRR++I++ Sbjct: 272 SEKRAQGVSDALQEQGIDAARITA-KGEGESNPIASNATAAGREQNRRVEIVI 323 >gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum seropedicae SmR1] gi|300076101|gb|ADJ65500.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 10/148 (6%) Query: 193 QDLAKKISSTLSGLVADN--IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + ++I+S ++ + + I G+ T+ G+L F+ + PE Sbjct: 120 EAQRQQIASDMATSLNSSYIINNGLRVSTSEQGVL-DNTLANRVVSFESGRATLTPEGKR 178 Query: 251 VLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L +I + + I G+TD + N LSL RA + L GV + + Sbjct: 179 ILDEIAATMLQLKGRRVEIIGNTDNE---GLRASNISLSLARADAVKAYLSTKGVDDS-L 234 Query: 310 SKISGFAHHRLKIASDP--MNSANRRID 335 SG R ++ + NRRI+ Sbjct: 235 LTTSGQGPDRPVASNATSEGRARNRRIE 262 >gi|320095395|ref|ZP_08027074.1| outer membrane protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977666|gb|EFW09330.1| outer membrane protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 402 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIA 281 G I++ D +FD S + L K+ VLA + + + GHTD+ + A Sbjct: 283 GTTITLQD---GVLFDFGESAVRADAADTLAKLASVLADAKVPAAHVYGHTDS--ISDEA 337 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRR 333 N LS RA + L K+G + GF + + +P ANRR Sbjct: 338 F-NQTLSEQRAKAVVDELKKNGATAS--LDWQGFGETKPVAPNTNDDGTDNPAGRQANRR 394 Query: 334 IDILV 338 ++I + Sbjct: 395 VEIFI 399 >gi|224417733|ref|ZP_03655739.1| CADF precursor [Helicobacter canadensis MIT 98-5491] gi|253827077|ref|ZP_04869962.1| outer membrane protein OprF [Helicobacter canadensis MIT 98-5491] gi|313141275|ref|ZP_07803468.1| cadf [Helicobacter canadensis MIT 98-5491] gi|253510483|gb|EES89142.1| outer membrane protein OprF [Helicobacter canadensis MIT 98-5491] gi|313130306|gb|EFR47923.1| cadf [Helicobacter canadensis MIT 98-5491] Length = 306 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S++ P +Q + + + + I GHTD++ A N +LS RA S Sbjct: 202 FPTDSAVVDPVYYPEIQDFAKYMDQNPDKTAVINGHTDST---GSAAYNQKLSEKRAQSV 258 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++K G+S +R+ G+ + ++ NRR++ Sbjct: 259 KNEIVKQGISSERLEA-KGYGEEKPIASNKTREGRQKNRRVE 299 >gi|170750466|ref|YP_001756726.1| OmpA/MotB domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656988|gb|ACB26043.1| OmpA/MotB domain protein [Methylobacterium radiotolerans JCM 2831] Length = 319 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + LP + + + +L ++I G+TD + A N LS RA + Sbjct: 218 FATDRAEILPASAPQIDAVAALLRTDPGLRLAINGYTDGT---GAAAHNQALSDGRAKAV 274 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 L+ +G+++DR+ + GF ++D + NRR++++ Sbjct: 275 VARLVGAGIAKDRL-RAEGFGAASPVASNDSAAGRAQNRRVELV 317 >gi|162454125|ref|YP_001616492.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161164707|emb|CAN96012.1| putative outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 274 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289 +FD S + P + L+ + + + E + I GHTDA + N LS Sbjct: 71 EGKIVFDTSKATIRPGSEKTLETLLQFIKEHPEVTRLRIEGHTDAQ---SSEEHNQALSA 127 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 RA + L+ V+ DR+ + GF R ++ S NRR++ V Sbjct: 128 RRALAVADWLVDHEVASDRLIAV-GFGESRPLGPNEIAAGRSENRRVEFHV 177 >gi|57505781|ref|ZP_00371707.1| outer membrane protein OprF [Campylobacter upsaliensis RM3195] gi|57016054|gb|EAL52842.1| outer membrane protein OprF [Campylobacter upsaliensis RM3195] Length = 316 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 9/103 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P +Q I +VL + I + GHTD + N +LS RA Sbjct: 212 FEFDKTTINPAFESRIQNIAKVLEENEKYNTI-LEGHTDNT---GSRAYNQKLSERRAQR 267 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 LMK GV + RI + G+ + + +++ + NRR++ Sbjct: 268 VANELMKFGVDKKRIE-VKGYGQDKPRSSNETKEGRADNRRVE 309 >gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] gi|254040630|gb|ACT57426.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + + +LQ I +L VI+I+ HTD+ ++N +S +RA L++ Sbjct: 88 LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSI---GTLKNNLLISQERADVIKSYLIQR 144 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 GVS +R + GFA+ +D N+RI+I + R Sbjct: 145 GVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185 >gi|300023765|ref|YP_003756376.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525586|gb|ADJ24055.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 716 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 19/288 (6%) Query: 52 WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSV 111 + + + KA N+ K D R+ I L D V Sbjct: 438 YATSQSVAGDVKAAAGQTCETTVNVAFVGKMKTDLAWKATRAPNGMITLEGDVPDDPARV 497 Query: 112 DLKIGSTNQ-KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE 170 + + + + I + +L + + + + + E I Sbjct: 498 RVIETAQRIYPGESITDQMKIVGAPPEPWQSATRVALEQLARLRRGDVEMSGKEVMIQGA 557 Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 +L+ + + + ++G L T Sbjct: 558 AESERVADEIRSVLSTDLPPGFK--VRDAITVMTGEEKAADSCQTLMRQTS--------- 606 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + T F+++ + ++ L+ + EV I I GHTDA N RLS Sbjct: 607 AKGTINFERAKADLTSDSTQTLRDLVEVANECPSFSIEIEGHTDAE---GTDERNQRLSD 663 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 RA + L ++GVS R+S I G+ R A++ + NRRI+ Sbjct: 664 RRARAVADFLTQNGVSARRLSTI-GYGATRPVADNATETGRAKNRRIE 710 >gi|332668433|ref|YP_004451221.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337247|gb|AEE54348.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S++ + +L ++ ++L + + GHTD N +LS RA + Sbjct: 398 FETGSAVLKNTSNTILDQVVDILKRYSDYNVRVSGHTDNV---GSDELNLKLSKARAKAC 454 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L+ G+ +RI GF R + + NRR + Sbjct: 455 TDYLVSKGIPANRIV-FDGFGESRPVANNATPQGRTQNRRTE 495 >gi|170734971|ref|YP_001774085.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169821009|gb|ACA95590.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 220 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ P L + L + + + G+TDA+ N LS RA Sbjct: 118 FATDSAVLTPAATAALDTL---LNQQADRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ D + +G ++D + NRR++I ++ Sbjct: 172 DAVAGYLREHGLKADSFAA-AGHGEANPAASNDTAEGRARNRRVEISLQ 219 >gi|332285773|ref|YP_004417684.1| lipoprotein PlpD [Pusillimonas sp. T7-7] gi|330429726|gb|AEC21060.1| lipoprotein PlpD [Pusillimonas sp. T7-7] Length = 266 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 14/116 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S++ + ++ + L + E +++ GHTD A N RLS RA S Sbjct: 155 FAFGSAVLTTAGLSTVRDVATQLKQLSKLEQVAVAGHTDRI---GDAGANQRLSQQRAES 211 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDILVEDRQ 342 L+ G+ + + G+ R + D + + NRR+DI V+ ++ Sbjct: 212 VRNALVAQGIPSSAV-RAQGYGESRPAVQCDQQDRNDLIACLAPNRRVDIEVQGQR 266 >gi|167565227|ref|ZP_02358143.1| hypothetical protein BoklE_21929 [Burkholderia oklahomensis EO147] Length = 459 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + P+ + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 264 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 323 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L + + R + SG + + + NRR+D+L Sbjct: 324 ADELRTTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 376 >gi|187250732|ref|YP_001875214.1| outer membrane protein [Elusimicrobium minutum Pei191] gi|186970892|gb|ACC97877.1| Outer membrane protein [Elusimicrobium minutum Pei191] Length = 174 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S +L K+ ++ + + GHTD + ++W LS RA + Sbjct: 65 FEFDSVHLAASAYPILDKVAGFMVGRQHIKLIVEGHTDN--VGSDEYNDW-LSEARAIAV 121 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 ++ GV D I K+ GF R D + NRRI V DR Sbjct: 122 KSYIVSRGVHPDSI-KVYGFGKRRPLTLDDSIEGRATNRRIVFTVTDR 168 >gi|119776394|ref|YP_929134.1| OmpA/MotB [Shewanella amazonensis SB2B] gi|119768894|gb|ABM01465.1| OmpA/MotB [Shewanella amazonensis SB2B] Length = 201 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 212 VKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIR 269 VKG + G + +I ++R +F SS P+ ++++ + ++I Sbjct: 53 VKGAAIDNYGCGDIKTINERRELKVLFPNDSSYLAPQYFGQIEELASFMRQFPNTKVTIE 112 Query: 270 GHTDASPFRNIARD-NWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPM 327 GH R D N LS RA + +VL + G+ R+ + GF ++ SD Sbjct: 113 GHCS----RTGGYDYNMELSQRRANAVTEVLTQQYGIESSRLKAV-GFGYNSPVDPSDTP 167 Query: 328 NS--ANRRI--DIL 337 + NRR+ +I+ Sbjct: 168 EAHDKNRRVIAEIV 181 >gi|262403402|ref|ZP_06079961.1| outer membrane protein A precursor [Vibrio sp. RC586] gi|262350394|gb|EEY99528.1| outer membrane protein A precursor [Vibrio sp. RC586] Length = 332 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + + ++ D VK + T I + + + +F S P E I L +I V Sbjct: 188 VEAAPTSIIEDTPVKETVTVKTPPQIQ-TFLPKTTVGLFGFDSVEPSQEFIDQLTEISSV 246 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + GHTD++ A N +S RA + L++ GV+ ++ G Sbjct: 247 LISYPQAQAKVVGHTDST---GSALYNQNISEHRAQAVVNKLIELGVTPTQLEW-RGEGE 302 Query: 318 HRLKIASDP--MNSANRRIDILV 338 + ++ +ANRR++I + Sbjct: 303 FQPVADNNTAEGRAANRRVEITI 325 >gi|220934640|ref|YP_002513539.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995950|gb|ACL72552.1| OmpA/MotB domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDR 291 +F +S+ P+ L ++ LA V I + GHTD + A N LS R Sbjct: 113 AALFAINSAAISPQGRAELDQLVSDLARLDNVQNIHVVGHTDNT---GAADYNMDLSKRR 169 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A S L++ G+ D I+ G + ++ + NRR++I + Sbjct: 170 AESVKAYLVEKGIRADLIT-TEGRGITQPVASNATTEGRAQNRRVEITI 217 >gi|298504468|gb|ADI83191.1| OmpA family outer membrane protein [Geobacter sulfurreducens KN400] Length = 429 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P+ ++K + L + I GHTD+ N +LS RA + Sbjct: 321 FDTDKAVVKPQYNDEIKKAADFLKEYPDATAVIEGHTDSV---GSDAYNQKLSERRAKAV 377 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 + L+ G+S R+S GF + + NRR+ +++ Sbjct: 378 MKYLVDKFGISAKRLSA-KGFGESKPIADNATEEGRYKNRRVVAVID 423 >gi|238754016|ref|ZP_04615375.1| Inner membrane lipoprotein yiaD [Yersinia ruckeri ATCC 29473] gi|238707768|gb|EEQ00127.1| Inner membrane lipoprotein yiaD [Yersinia ruckeri ATCC 29473] Length = 219 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR G I + N FD +SS P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRQGDNIVLN-MPNNVTFDTNSSNLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ N LS RA + L+ GV+ +RI + G Sbjct: 142 EKTAVNVTGYTDST---GARAHNMILSQQRAETVGSALITQGVAANRI-RTIGAGPDNPV 197 Query: 322 IASDPMN--SANRRIDILV 338 + + NRR++I + Sbjct: 198 ATNSTTAGKAQNRRVEITL 216 >gi|167740993|ref|ZP_02413767.1| OmpA family protein [Burkholderia pseudomallei 14] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|167578218|ref|ZP_02371092.1| OmpA family domain protein [Burkholderia thailandensis TXDOH] Length = 333 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ L ++ ++L + + I GHTD N LS RA + Sbjct: 231 FDTDKAQVKPESKAQLDEMAKLLTANPNLKVYIVGHTDNQ---GQFAHNVDLSQKRADAV 287 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 Q L + ++ R+ G A ++ + + NRR++++ Sbjct: 288 AQTLATTYRIAPGRLVA-KGVASLSPVASNGDEAGRAQNRRVELV 331 >gi|39995468|ref|NP_951419.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA] gi|39982231|gb|AAR33692.1| OmpA domain protein [Geobacter sulfurreducens PCA] Length = 429 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P+ ++K + L + I GHTD+ N +LS RA + Sbjct: 321 FDTDKAVVKPQYNDEIKKAADFLKEYPDATAVIEGHTDSV---GSDAYNQKLSERRAKAV 377 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 + L+ G+S R+S GF + + NRR+ +++ Sbjct: 378 MKYLVDKFGISAKRLSA-KGFGESKPIADNATEEGRYKNRRVVAVID 423 >gi|16124456|ref|NP_419020.1| OmpA family protein [Caulobacter crescentus CB15] gi|221233140|ref|YP_002515576.1| outer membrane protein [Caulobacter crescentus NA1000] gi|13421324|gb|AAK22188.1| OmpA family protein [Caulobacter crescentus CB15] gi|220962312|gb|ACL93668.1| outer membrane protein [Caulobacter crescentus NA1000] Length = 226 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 ++G R G I ++ + F S P VL + L + I + G Sbjct: 97 LEGSGVMIRRNGDQIVLV-MPSDVTFAVDRSDVQPPFTRVLDDVARTLNAYPQTTIDVVG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP--M 327 H D+ N LS RA + L GV DR+ ++G + Sbjct: 156 HADS---SGPDDYNQTLSERRASAVAGYLTGPGGVLVDRVF-VAGMGERAPIADNATADG 211 Query: 328 NSANRRIDILVED 340 + NRR++I++ Sbjct: 212 RAQNRRVEIILRP 224 >gi|325953789|ref|YP_004237449.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323436407|gb|ADX66871.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 337 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + + +I + L ISI G+TD + + N LS RA + Sbjct: 235 FDTDKATLKADGKEAVAEITKALNTDKMLKISINGYTDNT---GDEKHNLDLSKQRAETV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + L+KSG+ +R+S GF + ++ S NRR++++ Sbjct: 292 KKELIKSGIDVNRLSS-EGFGQNNPIADNNTEEGKSQNRRVELI 334 >gi|260774012|ref|ZP_05882927.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14] gi|260610973|gb|EEX36177.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14] Length = 351 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 V+ ++ +T + ++ + F S + + + K+ + S +I+I GH Sbjct: 216 VEKIVEKTEIQQVNYELVSESFYSNFANDSYELI--SANDIDKLIPKIKKSQGMITIIGH 273 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329 TD+ N++LS RA S L+K+G+ D++ + G + + + Sbjct: 274 TDS--IGRPLY-NYQLSYKRAQSVADYLIKNGIKSDQVV-VIGMGEDKPIADNLSYEGRA 329 Query: 330 ANRRIDIL 337 NRR++++ Sbjct: 330 KNRRVEVI 337 >gi|288940353|ref|YP_003442593.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288895725|gb|ADC61561.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 608 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 14/253 (5%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 +L + + + N + R + ++ +LT + + L Sbjct: 359 ELESSLETVRAEAEEARTTLNAALEQARARLAELQQAAETTAQDENQALTEATARIAALE 418 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + ++ + + ++ L + + Q + + S A + + + Sbjct: 419 AELEQARAQDGDAEALSAAQARIDALEAELETARQSVQPEAPSADQSEAAAELARLRALQ 478 Query: 219 TTRTGILISIIDQ-------RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 T + + ++ + F + + L++I E+L E I G Sbjct: 479 TRFAQLNGTFTERGLLLSLAESELSFPTGRATLPTGELASLERIAELLKAHPELTARIEG 538 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328 HTD+ A N LSL RA + Q L++ GV R+S G R A+ Sbjct: 539 HTDSL---GSAALNQSLSLQRAEAVRQALVERGVDGGRLSA-EGLGPTRPIADNATAEGR 594 Query: 329 SANRRIDILVEDR 341 NRR+++ + DR Sbjct: 595 GKNRRVEVYILDR 607 >gi|120437200|ref|YP_862886.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117579350|emb|CAL67819.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 522 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 27/291 (9%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 E Y SK F P S + + ++E T + N ++ Q Sbjct: 228 EDYSVEHPSLSADGSKLYFASDMPGGSGSFDIYVVDVNEDGTYGTPQNLGAGVNTAQRDQ 287 Query: 126 RL---ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 + ++ Y ++ + R ++ + S + + + + + Sbjct: 288 FPFISDEDVLYFTSDGHQGFGNLDIFRTEGDFSEVENLGESINSGSDDFAFVIKESEEMG 347 Query: 183 ILAMKRK--KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 A R+ L ++ + + + + T +I I + FD Sbjct: 348 YFASNRRGTDNLYQFTREENEIIEAPT--------VTDETSGQDIIPI--DGSKIYFDFD 397 Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 + E+ VL + + + + H DA R N LS RA S L Sbjct: 398 KATIKAESKPVLDSVVTYMNDYPNIKVKVESHADA---RGSDSYNMALSKRRAASTVDYL 454 Query: 300 MKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQG 343 ++ G+ + R++ G+ R ++ + NRR +V +R G Sbjct: 455 VEKGIDKARLTS-EGYGESRPTNDCTQPTGCTNEQYAKNRRSAFVVSNRNG 504 >gi|86740618|ref|YP_481018.1| OmpA/MotB [Frankia sp. CcI3] gi|86567480|gb|ABD11289.1| OmpA/MotB [Frankia sp. CcI3] Length = 363 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F ++ P + L ++ L V+ + GH DA A N LSLDRA Sbjct: 260 FPVGAATLSPPARLWLDRVAAALRAGRVVVLVGGHADA---SGSATLNQALSLDRAQVIA 316 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L GV D + +++GF + +ANRR++I+ Sbjct: 317 DYLTDRGVRPD-LIRVAGFGSRWPVADNATPRGRAANRRVEIV 358 >gi|85712856|ref|ZP_01043898.1| OprF [Idiomarina baltica OS145] gi|85693320|gb|EAQ31276.1| OprF [Idiomarina baltica OS145] Length = 362 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 26/217 (11%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS---KEK 182 R+E + + +E N + G++ + + P + Sbjct: 151 RVEGGVQQGFDEDYTEGFANVGLQYFFGGRNAVTEAKPRPAAAQPTETTPAPQQTMDSDN 210 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 + + + D ++ S G ET R +L+ FD SS Sbjct: 211 DGVIDSRDKCADTPRRYSVDADGCTMYEN------ETVREQLLVE---------FDFDSS 255 Query: 243 IPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 + + + ++ E + ++I GHTD + + W LS RA S VL++ Sbjct: 256 QVRKDAMEPIAEMAEFMNEHPQLDLTIHGHTDK--IGDAEYNQW-LSQRRAESVKNVLVE 312 Query: 302 S-GVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 S G+S RI+ + G + K+ D NRRI+ Sbjct: 313 SYGISASRINTV-GHGESQPKVKGDSPADRQENRRIE 348 >gi|221369495|ref|YP_002520591.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] gi|221162547|gb|ACM03518.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 254 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 24/249 (9%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P ++ D + + + + + + + NSL Sbjct: 23 PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAVADVPNSLG 82 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + L + + + + L LA +++ GL+ Sbjct: 83 APAGEDPGLRPTASTDGAPGETGRPVLGLPQGADRLAAADPPPEGRETAEVTPESFGLLD 142 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267 + V F S++ + +L ++ V+ S + Sbjct: 143 PALQVNVRIH------------------FAFDSAVLASDQTPLLAQLCTVMKASDIRLFQ 184 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326 I GHTDA N +LSL RA + L G++ +R+ + G L SDP Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLTNQSDP 240 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 241 RSGENRRVE 249 >gi|254195556|ref|ZP_04901984.1| OmpA family protein [Burkholderia pseudomallei S13] gi|169652303|gb|EDS84996.1| OmpA family protein [Burkholderia pseudomallei S13] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|254182964|ref|ZP_04889557.1| OmpA family protein [Burkholderia pseudomallei 1655] gi|184213498|gb|EDU10541.1| OmpA family protein [Burkholderia pseudomallei 1655] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|33598186|ref|NP_885829.1| putative outer membrane protein [Bordetella parapertussis 12822] gi|33566744|emb|CAE38956.1| putative outer membrane protein [Bordetella parapertussis] Length = 208 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 + E + ++I + FD S P + VL + L E + GHTD+ Sbjct: 85 VVEMPDGSLKVNI---PSNVSFDTDKSQLKPALLPVLDSVARALNQHPELRTKVVGHTDS 141 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANR 332 + A N +LS++RA + L K GV++ R++ + G + A+ +ANR Sbjct: 142 T---GSAAHNQQLSVNRARAVTSYLGKQGVAQGRMT-VEGRGANDPVGDNATAEGRAANR 197 Query: 333 RIDILV 338 R+++ + Sbjct: 198 RVEVYL 203 >gi|328470939|gb|EGF41850.1| outer membrane protein OmpA [Vibrio parahaemolyticus 10329] Length = 329 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA + + +G+ DR++ + G + NRR++++V Sbjct: 268 ERRAQAVADYITSAGIDADRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318 >gi|226198818|ref|ZP_03794382.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|225929258|gb|EEH25281.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|24376330|ref|NP_720438.1| outer membrane protein A [Shewanella oneidensis MR-1] gi|24345232|gb|AAN53038.1| outer membrane protein OmpA [Shewanella oneidensis MR-1] Length = 342 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 18/137 (13%) Query: 214 GVLFETTRTGILISIIDQR---------NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 V+ + ++ I+++R N+ +F +SS+ + + L Sbjct: 202 EVVTQVVELPPVVQIVEKRQFVYSEQKGNSLLFAHNSSVLNNTSQ--FADVVSFLKQHPT 259 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I GHTD++ + + W LS RA S L+ GV +++ + G Sbjct: 260 ASAVITGHTDST--GSDKYNQW-LSERRAISVANYLVSQGVQSAQLTSV-GKGETASVAD 315 Query: 324 SDPMN--SANRRIDILV 338 + N + NRR++I + Sbjct: 316 NTTENGRAMNRRVEITI 332 >gi|114045658|ref|YP_736208.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113887100|gb|ABI41151.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 487 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ S LPE V++ + L + + + GHTD + N LS RA + Sbjct: 380 LFEYDSDKLLPEAQPVVEVLASYLKANPKRAFYVVGHTDD---KGNQAYNQGLSQRRAVA 436 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 ++L S G+ ++ + G H + + NRR+++++ Sbjct: 437 IVKLLTSSHGIQTQQLEAV-GIGEHAPVASNSDEAGQQQNRRVELVLRS 484 >gi|326402347|ref|YP_004282428.1| putative outer membrane protein [Acidiphilium multivorum AIU301] gi|325049208|dbj|BAJ79546.1| putative outer membrane protein [Acidiphilium multivorum AIU301] Length = 361 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P ++ + + + +++ G+TD N +LSL RA++ Sbjct: 259 FFNWDKANLTPRAQQIVSEAAKASQTTKVTRLNVNGYTDT---SGAPAYNMKLSLRRAHN 315 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GVS++ I I G+ L + + P NRR++I++ Sbjct: 316 VAAQLVADGVSKNDIV-IKGYGETHLLVPTGPNVREPQNRRVEIIL 360 >gi|316936265|ref|YP_004111247.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315603979|gb|ADU46514.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 464 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 92/262 (35%), Gaps = 14/262 (5%) Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 G + + PP K ++ + D + + ++ + Sbjct: 211 GDNEIEAPPYVFRAYKDPVAGQVALDGYVPDNAVHAALAAATGRKFFGEKVVDNLKASVG 270 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KI 199 K L L + + ++ E + E + R ++L + + Sbjct: 271 APKGFLDAAVTALGALSRLSTGTLVLSDREIHLSGDALYEAAASQIRGGLNKELPQGWTV 330 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + LS A V + + G+L + T FD +S+ ++ +L ++ E Sbjct: 331 KADLSVKPAAAPVDASVCQQLFNGLL-----AKTTVQFDSASAGISKDSAGLLDRLIETA 385 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I I GHTD+ N LS RA + ++++GV+ +R+ + G+ Sbjct: 386 MRCPNARIEIAGHTDSD---GDDAFNQSLSEKRARAVVDYMVRAGVTPERL-QAFGYGSK 441 Query: 319 RLK--IASDPMNSANRRIDILV 338 SD + NRRID +V Sbjct: 442 IPLSGNDSDAGKAKNRRIDFVV 463 >gi|4580973|gb|AAD24560.1|AF117968_1 OprF [Pseudomonas resinovorans] Length = 340 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + E+ ++ + + + ++ GHTD+ N +LS RA + Sbjct: 243 FDFDKAKVKEESYGDIKNLADFMNQYPATTTTVEGHTDSV---GTDAYNQKLSERRADAV 299 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 VL+ GV +R++ + G+ R + + NRR+ Sbjct: 300 RDVLVDQYGVGSERVNAV-GYGETRPVADNATADGRAVNRRV 340 >gi|148259194|ref|YP_001233321.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146400875|gb|ABQ29402.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 361 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P ++ + + + +++ G+TD N +LSL RA++ Sbjct: 259 FFNWDKANLTPRAQQIVSEAAKASQTTKVTRLNVNGYTDT---SGAPAYNMKLSLRRAHN 315 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GVS++ I I G+ L + + P NRR++I++ Sbjct: 316 VAAQLVADGVSKNDIV-IKGYGETHLLVPTGPNVREPQNRRVEIIL 360 >gi|148259193|ref|YP_001233320.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|326402346|ref|YP_004282427.1| putative outer membrane protein [Acidiphilium multivorum AIU301] gi|146400874|gb|ABQ29401.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] gi|325049207|dbj|BAJ79545.1| putative outer membrane protein [Acidiphilium multivorum AIU301] Length = 364 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P ++ + + + +++ G+TD N +LSL RA++ Sbjct: 262 FFNWDKANLTPRAQQIVSEAAKASQTTKVTRLNVNGYTDT---SGAPAYNMKLSLRRAHN 318 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GVS++ I I G+ L + + P NRR++I++ Sbjct: 319 VAAQLVADGVSKNDIV-IKGYGETHLLVPTGPNVREPQNRRVEIIL 363 >gi|222823421|ref|YP_002574995.1| outer membrane fibronectin-binding protein [Campylobacter lari RM2100] gi|222538643|gb|ACM63744.1| outer membrane fibronectin-binding protein [Campylobacter lari RM2100] gi|244538678|dbj|BAH82830.1| fibronectin-binding protein [Campylobacter lari] gi|244538683|dbj|BAH82834.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 21/167 (12%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 P + ++ K + AK+I + ++ + E T I + Sbjct: 173 GNKTPKAPQLATNQIEEKPQ----AKQIDKSCPEPRKGALLDHIGCEKT-----IML--- 220 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 F PE +Q++G+VL + + +I GHTD + N +LSL+ Sbjct: 221 --EGHFGFDQITINPEFAQKIQEVGKVLEENPQYYTILEGHTDNT---GPKAYNQKLSLE 275 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 RA + + L K+GV++++I+ G+ + ++D + NRR++ Sbjct: 276 RAKAVAKELEKAGVAKEKIT-TKGYGFEKPIASNDTKEGRAQNRRVE 321 >gi|53721134|ref|YP_110119.1| OmpA family protein [Burkholderia pseudomallei K96243] gi|52211548|emb|CAH37542.1| OmpA family membrane protein [Burkholderia pseudomallei K96243] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|126456220|ref|YP_001074174.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|126229988|gb|ABN93401.1| OmpA family protein [Burkholderia pseudomallei 1106a] Length = 542 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 424 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 480 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 481 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 529 >gi|325286110|ref|YP_004261900.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321564|gb|ADY29029.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 372 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 9/107 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLD 290 +F+ + + L + + + +L ++ +SI GHTDA N LS Sbjct: 265 KNVLFEFNKADLLTASEEEINVLTTILRNN-NKLSIEIYGHTDAV---GSKERNLELSNQ 320 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 RA + L+ SG+ E+R+ I G+ + + NRR++ Sbjct: 321 RAKAVASYLIDSGIDENRVKWI-GYGSSKPVADNTTEEGRTQNRRVE 366 >gi|237509510|ref|ZP_04522225.1| OmpA family membrane protein [Burkholderia pseudomallei MSHR346] gi|235001715|gb|EEP51139.1| OmpA family membrane protein [Burkholderia pseudomallei MSHR346] Length = 558 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|83716533|ref|YP_439774.1| OmpA family domain-containing protein [Burkholderia thailandensis E264] gi|167616356|ref|ZP_02384990.1| OmpA family domain protein [Burkholderia thailandensis Bt4] gi|257142917|ref|ZP_05591179.1| OmpA family domain-containing protein [Burkholderia thailandensis E264] gi|83650358|gb|ABC34422.1| OmpA family domain protein [Burkholderia thailandensis E264] Length = 333 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ L ++ ++L + + I GHTD N LS RA + Sbjct: 231 FDTDKAQVKPESKAQLDEMAKLLTANPNLKVYIVGHTDNQ---GQFAHNVDLSQKRADAV 287 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 Q L + ++ R+ G A ++ + + NRR++++ Sbjct: 288 AQTLATTYRIAPGRLVA-KGVASLSPVASNGDEAGRAQNRRVELV 331 >gi|37679816|ref|NP_934425.1| outer membrane protein [Vibrio vulnificus YJ016] gi|37198561|dbj|BAC94396.1| outer membrane protein [Vibrio vulnificus YJ016] Length = 348 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++KRL L +++ LS D + I ID + F +S+ Sbjct: 183 QRKRLHQLEQQLDYVLSHTRCVPPRDEDAFRFQLDIVNELYDILNIDNQ----FAVNSAE 238 Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L K +L H+ +++ GH DA+ N +L++DRA + L Sbjct: 239 INPKYMGHLAKAANILREHTALTLTVTGHADAT---GNEAYNEKLAMDRAEQVKRYLAIF 295 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 G+ +RI+ S + NRR+ I ++ Sbjct: 296 GLDPNRITTYS-LGEKLPLFDGESAAVRLTNRRVSIEIQS 334 >gi|192360671|ref|YP_001983282.1| OmpA family protein [Cellvibrio japonicus Ueda107] gi|190686836|gb|ACE84514.1| OmpA family protein [Cellvibrio japonicus Ueda107] Length = 217 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G + R G + +I F SS+ + VL + +V+A + I + G Sbjct: 89 LQGTGVQVRREGNNLYLI-MPGNITFATSSADIRSDFFPVLNSVAKVVAEFNQTSIRVTG 147 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMN 328 HTD++ N LS RA S L V+ RI + G+ ++D Sbjct: 148 HTDST---GSDSINQPLSERRADSVAMYLRSQKVASARI-QAYGYGSRYPVASNDTPTGR 203 Query: 329 SANRRIDILVEDRQ 342 NRR+++ + + Sbjct: 204 EQNRRVELELIPNE 217 >gi|152995997|ref|YP_001340832.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150836921|gb|ABR70897.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 311 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 16/236 (6%) Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 + + + R + + + + R + L + ++ Sbjct: 58 NEAEQAVKTAEEPRTDEMLGRHLMFVAYSKVEIAENRAKSRMLVLERKQLSQQRNEATLA 117 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF---ETTRTGILISII 229 L + AM+ K + L ++ + + + + + T G+++++ Sbjct: 118 ARNRELGVARNDAMQSKADAEKL--RMEANAERNRSQEFQRQLGMLNAKATNRGMIMTLG 175 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 D F + P ++ L K+ L + I I G+TD+ N RLS Sbjct: 176 DLS----FATGKAKLQPSVLIDLDKLVVFLNKYADRSIVIEGNTDSV---GSEALNLRLS 228 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + L+ G++ R++ + +D NRR+DI++ + + Sbjct: 229 QHRASAVRDYLVGKGINSARLT-VVANGEGNPLDTNDSKLGRQHNRRVDIVISNTE 283 >gi|15836965|ref|NP_297653.1| hypothetical protein XF0363 [Xylella fastidiosa 9a5c] gi|9105193|gb|AAF83173.1|AE003888_6 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 242 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S+ P+ L+ + L + +I + G+T Sbjct: 106 NTGIDVKRDGDNITLN-LPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYT 164 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSA 330 D+ N RLS DRA + L GV +R+ ISG +++ S Sbjct: 165 DSI---GSDVVNQRLSEDRAGAVASYLAGQGVQRERME-ISGMGKRYPIADNSTEAGRSK 220 Query: 331 NRRIDILVED 340 NRR++I + Sbjct: 221 NRRVEIHLIP 230 >gi|163744900|ref|ZP_02152260.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45] gi|161381718|gb|EDQ06127.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45] Length = 221 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 T TG + I+ +F S+ P L + + + + + GHTD+ Sbjct: 96 RVVITNTGDRL-IVTLPQDILFATDSTSVAPGLRDDLAALAQNVNIYQNSTLQVVGHTDS 154 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332 A N +LS RA + +L+ +GV + R+ + G + ++ S NR Sbjct: 155 D---GEAAYNQQLSERRAQAVGNILLSNGVPQQRL-QTFGRGESQPVASNLSAAGKSQNR 210 Query: 333 RIDILVED 340 R++I++ Sbjct: 211 RVEIVILP 218 >gi|261839369|gb|ACX99134.1| flagellar motor protein MotB [Helicobacter pylori 52] Length = 255 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKS-SSIPLPET 248 ++++S S + N G ++ IDQ + +F+ + S + Sbjct: 79 EEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSILKLPSNLLFENATSDTINQDM 138 Query: 249 IVVLQKIGEVLAHSTEV--ISIRGHTDASPF-RNIARDNWRLSLDRAYSAYQVLMKSGVS 305 ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY +VL++ G + Sbjct: 139 MLYIERIAKIIQKLPKRVHINVRGFTDDTPLTKTRFKSHYELAANRAYRVMKVLIQYGAN 198 Query: 306 EDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 +++ S + +D N R++I Sbjct: 199 PNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 231 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ ++ I+A + +A++ F Sbjct: 1 MAKKNKPTECPA-GEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYA 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP+ + + S + + K + + Sbjct: 60 PKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGS 107 >gi|257126222|ref|YP_003164336.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257050161|gb|ACV39345.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 225 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 5/118 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 I+ FD S P +L + E L + I GHTD+ + N L Sbjct: 73 IVFDEGALNFDFDKSYVKPYYNGLLGILKEFLNEKDYNVGITGHTDS---KGSDAYNMAL 129 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 + RA + L++ G+S RI I + D + NRRI+ V +R G Sbjct: 130 GMRRAKAVKDRLIELGLSSSRIRGIDSKGESEPIATNETDEGRAQNRRIEFDVRNRDG 187 >gi|91224878|ref|ZP_01260138.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01] gi|91190424|gb|EAS76693.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01] Length = 330 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S L +G+ DR++ + G + NRR++++V Sbjct: 268 ERRAQSVADYLTAAGIGSDRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318 >gi|76819194|ref|YP_336761.1| OmpA family protein [Burkholderia pseudomallei 1710b] gi|76583667|gb|ABA53141.1| OmpA family membrane protein [Burkholderia pseudomallei 1710b] Length = 558 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|254181403|ref|ZP_04888000.1| ompA family protein [Burkholderia pseudomallei 1655] gi|184211941|gb|EDU08984.1| ompA family protein [Burkholderia pseudomallei 1655] Length = 215 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P ++L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATDQYAITPAFTLLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ +R+S G A++ + NRR++I + Q Sbjct: 165 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213 >gi|254299760|ref|ZP_04967209.1| OmpA family protein [Burkholderia pseudomallei 406e] gi|157809397|gb|EDO86567.1| OmpA family protein [Burkholderia pseudomallei 406e] Length = 558 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|126444048|ref|YP_001061161.1| OmpA family protein [Burkholderia pseudomallei 668] gi|126223539|gb|ABN87044.1| OmpA family protein [Burkholderia pseudomallei 668] Length = 558 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|154174678|ref|YP_001407584.1| outer membrane fibronectin-binding protein [Campylobacter curvus 525.92] gi|112803800|gb|EAU01144.1| outer membrane fibronectin-binding protein [Campylobacter curvus 525.92] Length = 337 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 N GV+ + T +I + D FD S P ++K+ + + + + Sbjct: 210 NTPAGVVVDETGCEKVIVLRDLDVNFAFD--SYKVGPGYAAEIKKVADFMGEHPEYRVVL 267 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD+ N +LS RA + +VL GV + +IS I G+ R + Sbjct: 268 AGHTDSV---GKEAYNQKLSEKRAKAVAEVLEGYGVEKKKISTI-GYGELRPIATNSTKE 323 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 324 GRAQNRRVE 332 >gi|325914015|ref|ZP_08176371.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas vesicatoria ATCC 35937] gi|325539784|gb|EGD11424.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas vesicatoria ATCC 35937] Length = 241 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD S P+ L + L + ++ + GHT Sbjct: 104 NTGIDVQRQGDNITLN-LPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + ++D + N Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|260221771|emb|CBA30668.1| hypothetical protein Csp_C24700 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 214 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 18/161 (11%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L + KKR Q+ +++ L +A + G T I I + +F +S Sbjct: 50 LESEVKKRQQEEQRRM--ALEKALAIPLQSG---RVTLNNGRIGIS---GSVLFAVNSDQ 101 Query: 244 PLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIAR---DNWRLSLDRAYSAY 296 + +L+ + L E++ + G TD R DN LS R+ + Sbjct: 102 LRADGRQLLKSLVPPLQVYLGERDEMLMVSGFTDNVAVSGANRHFADNLELSAQRSLTVT 161 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 + L++ G+ R+ + F + + ++ + NRR++ Sbjct: 162 RALIEEGMPASRVFAAA-FGAQQPVASNQNESGRALNRRVE 201 >gi|152982971|ref|YP_001354367.1| outer membrane protein A precursor [Janthinobacterium sp. Marseille] gi|151283048|gb|ABR91458.1| outer membrane protein A precursor [Janthinobacterium sp. Marseille] Length = 206 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 ++ PE L + L + I GHTD+ N +LS+ RA + L Sbjct: 105 KAVLKPEGKAKLDDLTSKLNGLNLEVIIAVGHTDSV---GSDAYNQKLSVRRAEAVKAYL 161 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQ 342 + GV R+ G + + + NRR++I +V R+ Sbjct: 162 VGKGVDAKRVY-TEGKGEKQPVATNKTAAGRAQNRRVEIEVVGTRK 206 >gi|114769969|ref|ZP_01447579.1| OmpA domain protein [alpha proteobacterium HTCC2255] gi|114549674|gb|EAU52556.1| OmpA domain protein [alpha proteobacterium HTCC2255] Length = 210 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 17/176 (9%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + N + L L +++ L G G L + T ++++ Sbjct: 30 GDDSNGTIKRAIAGGALGAAIGNELDVQEEELRKNLEG-------SGALIKNTGNQLIVT 82 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 + FD SS L ++ + L + + I GHTD N + Sbjct: 83 L---PEAITFDIDSSEVRYSLEDTLIRLSKSLNKYPKTNVEIIGHTDNV---GGQDYNQK 136 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA S +L ++ VS RI G ++++ ++NRR++I++ Sbjct: 137 LSTRRAESVSSILAQNDVSRSRIKA-YGRGEIEPMMSNNSSKGRASNRRVEIMITP 191 >gi|327405866|ref|YP_004346704.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321374|gb|AEA45866.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 687 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 17/123 (13%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 IS I+ FD +I PE+ + L K+ ++L + I I GHTD R A N Sbjct: 564 ISNINPLKNVFFDLDKAILRPESFLELNKLRDLLKANPTMKIEIGGHTDT---RGDAAKN 620 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------------SANR 332 +LS RA S + L+ G+ R+S GF + I D +N NR Sbjct: 621 MQLSDARAKSVKEYLIAQGIEASRLSS-KGFGATKPIITDDVINKMATEKEKEKAHQENR 679 Query: 333 RID 335 R + Sbjct: 680 RTE 682 >gi|268315730|ref|YP_003289449.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333264|gb|ACY47061.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252] Length = 211 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 15/126 (11%) Query: 221 RTGILI--SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277 G+ + + D +F +S+ L + E LA E I G+TD P Sbjct: 81 DGGLRVAVELADD----LFAPASATLTDRGRRRLDALAERLARFPEHRFRIEGYTDNVPI 136 Query: 278 RNI----ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSA 330 + NW L+ RA + + +++ G+ +R +S + R +D Sbjct: 137 GDRLKERFPSNWELAAARAATVARYFIEAHGLDPERFEVVS-YGPTRPIGPNDTPEGRRL 195 Query: 331 NRRIDI 336 NRR+ I Sbjct: 196 NRRVVI 201 >gi|111223535|ref|YP_714329.1| hypothetical protein FRAAL4134 [Frankia alni ACN14a] gi|111151067|emb|CAJ62776.1| conserved hypothetical protein; putative OmpA/MotB domain [Frankia alni ACN14a] Length = 252 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 18/127 (14%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARD 283 I I + +FD S + L ++ + I +RGHTDA+ A Sbjct: 134 ILIFNSD--ALFDTGSFAI--GSTDTLDATIRLINSHYAGGDIQVRGHTDAT---GSAAS 186 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNSA-NRRID 335 N LS RA + + L+ G+ ++ + G + DP NRR++ Sbjct: 187 NQTLSERRADTVRRYLVDHGIRASSVTSV-GLGSTHPLAEEANPDGSPDPEGQRFNRRVE 245 Query: 336 ILVEDRQ 342 ++V Q Sbjct: 246 LVVRSHQ 252 >gi|4530367|gb|AAD22006.1| major outer membrane protein [Pseudomonas fluorescens] Length = 344 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKENSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ + G+ R A+D + NRR++ Sbjct: 295 KQVLTNQYGVESSRVQSV-GYGESRPVADNATDAGRAVNRRVE 336 >gi|88798991|ref|ZP_01114572.1| flagellar motor protein [Reinekea sp. MED297] gi|88778218|gb|EAR09412.1| flagellar motor protein [Reinekea sp. MED297] Length = 253 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 19/184 (10%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 D+ + E + ++ L D+ ++S + ++ D + Sbjct: 74 TPTGPDVFNPFFRPEPLPGTNIDNANSEVYAQESSLLDIQAQLSDAYAQMIQDRL----- 128 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 F + I I N+ F +S+ + VL ++ ++L + + + G++ AS Sbjct: 129 FSVSGNESWIEIQ-LANSITFSDNSADINDQAEAVLYELAKLLQGNALPVRVEGYSGASE 187 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334 R W LS RA + + L ++GV+ +R+S + F+ ++ D P RI Sbjct: 188 VRG-----WELSSSRAVAVVEYLQRAGVAGERLSSAA-FSSYQPSGEGDLTPG-----RI 236 Query: 335 DILV 338 I+V Sbjct: 237 QIVV 240 >gi|167578636|ref|ZP_02371510.1| hypothetical protein BthaT_10878 [Burkholderia thailandensis TXDOH] gi|167616778|ref|ZP_02385409.1| hypothetical protein BthaB_10778 [Burkholderia thailandensis Bt4] gi|257140710|ref|ZP_05588972.1| hypothetical protein BthaA_16123 [Burkholderia thailandensis E264] Length = 575 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + P+ + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 376 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 435 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L + + R + SG + + + NRR+D+L Sbjct: 436 ADELRATALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488 >gi|254189637|ref|ZP_04896147.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237] gi|157937315|gb|EDO92985.1| OmpA family protein [Burkholderia pseudomallei Pasteur 52237] Length = 558 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 440 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 496 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 497 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 545 >gi|302135199|ref|ZP_07261189.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 344 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ P ++ ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFNKSVVKPNSMGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A+D + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATDAGRAVNRRVE 336 >gi|149921395|ref|ZP_01909848.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149817715|gb|EDM77180.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 224 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 12/200 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 +E +T + + P + L D + Sbjct: 25 ASDTEPTQSLAEAPGSTALATSEQPTDAPVLAQASPEAAPPSDLDQDGIPDTLDQCPEDP 84 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + G ++ +L I I F S P + +L+ I VL Sbjct: 85 EDVDGDADEDGCPDLLCRLDPCEIAI-----FEKVYFAYDESTIEPRSFPLLKDIAFVLG 139 Query: 261 HST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 +S I I GHTD+ + + N LS R S + L+ GV++ ++S + G+ Sbjct: 140 YSPQVTIQIAGHTDS---KGRSEYNEGLSQRRVDSVREHLLSLGVNDQQLSSV-GYGEMT 195 Query: 320 LKIAS--DPMNSANRRIDIL 337 + + + NRR++ L Sbjct: 196 PIDTNRTEAGRAHNRRVEFL 215 >gi|28869499|ref|NP_792118.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato str. DC3000] gi|213968086|ref|ZP_03396231.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato T1] gi|301384938|ref|ZP_07233356.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato Max13] gi|302061987|ref|ZP_07253528.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato K40] gi|28852741|gb|AAO55813.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927066|gb|EEB60616.1| outer membrane porin OprF [Pseudomonas syringae pv. tomato T1] gi|330875557|gb|EGH09706.1| outer membrane porin OprF [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967341|gb|EGH67601.1| outer membrane porin OprF [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016208|gb|EGH96264.1| outer membrane porin OprF [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 344 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ P ++ ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFNKSVVKPNSMGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A+D + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATDAGRAVNRRVE 336 >gi|315179386|gb|ADT86300.1| outer membrane protein OmpA [Vibrio furnissii NCTC 11218] Length = 332 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + ++ F +S+ E L + L + + I GHTD++ N +L Sbjct: 215 FQKLDSKSFAHNSAKMSEEGKAQLGDLVAFLNEHPQANVEITGHTDST---GAEAYNQKL 271 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S RA L + G+ RI+ G ++ NRR++I++ Sbjct: 272 SEKRAQGVSDALQEKGIDAARITA-KGEGESNPIASNATAAGREQNRRVEIVI 323 >gi|262404049|ref|ZP_06080604.1| outer membrane protein A precursor [Vibrio sp. RC586] gi|262349081|gb|EEY98219.1| outer membrane protein A precursor [Vibrio sp. RC586] Length = 335 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 7/107 (6%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ SS I L I L + I GHTD++ N LS DRA Sbjct: 226 GFFENDSSRLSHNVIEQLSNIAATLNNHPQSRAVIVGHTDST---GSTAYNQLLSEDRAQ 282 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A +L++ GV+ +I G + + NRRI+I + Sbjct: 283 EAANLLIELGVTPTQIEW-RGLGESNPIADNHTADGRAQNRRIEITI 328 >gi|207108745|ref|ZP_03242907.1| flagellar motor protein MotB [Helicobacter pylori HPKX_438_CA4C1] Length = 150 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 227 SIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIAR 282 SI+ ++ +F+ + S + ++ L++I +++ + I++RG TD +P + + Sbjct: 6 SILKLPSSLLFENATSDAINQDMMLYLERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFK 65 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 ++ L+ +RAY +VL++ GV +++ S + +D N R++I Sbjct: 66 SHYELAANRAYRVMKVLIQYGVDPNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 121 >gi|134296618|ref|YP_001120353.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134139775|gb|ABO55518.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 213 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + SI G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALVQRGVAGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAAQ 212 >gi|15643441|ref|NP_228485.1| motility protein B [Thermotoga maritima MSB8] gi|4981200|gb|AAD35760.1|AE001740_6 motility protein B [Thermotoga maritima MSB8] Length = 289 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265 +++ + E G LI + D F+ S+ E +L K+G+ V+ H+T V Sbjct: 89 LSEEYKGKITVEERDEGTLIVLKDM---VFFEPGSAKLTAEAKELLAKVGQIVIEHTTNV 145 Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + G+ D P +I NW LS RA S + + E R+ Sbjct: 146 LEVYGYADDRPPLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 190 Score = 46.8 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 48/136 (35%), Gaps = 7/136 (5%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ----YFNPFGKNL 76 ++ W Y+D +T+L+ FF+ + ++ + + + ++ Sbjct: 4 KKREEEQKGSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGRPPSV 63 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + K I +E P +S+ I + + + + ++ + F + Sbjct: 64 LMGGKSINEE---PLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIVLKDMVFFEPGS 120 Query: 137 SQQSEHCKNSLTRDSE 152 ++ + K L + + Sbjct: 121 AKLTAEAKELLAKVGQ 136 >gi|39934843|ref|NP_947119.1| porin [Rhodopseudomonas palustris CGA009] gi|39648693|emb|CAE27215.1| OmpA/MotB domain, possible porin [Rhodopseudomonas palustris CGA009] Length = 441 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283 +S + F++ S++ + +L K+ + I + G+TD Sbjct: 328 RVSALASAEKISFERRSAVIDKASQPLLDKLAAAIKQCPAVTIEVAGYTDG---AGKKSA 384 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N LS RA + L K G+ ++ G+ + A+D + NRRI+ +V+ Sbjct: 385 NIALSKRRAEAVVASLTKVGIGSVKLVA-EGYGSAKPIAANDTAEGRAQNRRIEFVVK 441 >gi|156977475|ref|YP_001448381.1| hypothetical protein VIBHAR_06262 [Vibrio harveyi ATCC BAA-1116] gi|156529069|gb|ABU74154.1| hypothetical protein VIBHAR_06262 [Vibrio harveyi ATCC BAA-1116] Length = 334 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ + F+ S+ L L + + I G+TD+ A N +LS Sbjct: 215 EEYGSGTFEFDSAKLTDSVSERLDNFVNFLNEYPQAQVEITGYTDS---SGPAAYNLKLS 271 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA + L+ +G+ DR + ++G + NRR+ + V Sbjct: 272 ERRAQAVADYLIAAGIDADRFT-VTGMGEEDPVADNSTHEGREQNRRVVVHV 322 >gi|39937842|ref|NP_950118.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris CGA009] gi|192293627|ref|YP_001994232.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|39651702|emb|CAE30224.1| OmpA/MotB domain [Rhodopseudomonas palustris CGA009] gi|192287376|gb|ACF03757.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 464 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 97/288 (33%), Gaps = 17/288 (5%) Query: 56 ATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 A D +++I D + PP K ++ + D + Sbjct: 188 AKDLGGRESIAAALRTLPDGYTVGEN---DIEAPPYVFRAYKDPVAGQVTLDGYVPDNNV 244 Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 + ++ N + K L + L + + ++ E + Sbjct: 245 HAALAAATGRKFFNEKVVDNLKASVGAPKGFLEAATPALGALSRLSTGTLVLSDREVHLS 304 Query: 176 PPLSKEKILAMKRKKRLQDLAK--KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 E R ++L + + + LS A V + + G+L + Sbjct: 305 GDALYEVAANQIRGGLNKELPQGWTVKADLSVKPAAAPVDASVCQQLFNGLL-----AKA 359 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 T F+ +S+ ++ +L ++ E I + GHTD+ N LS RA Sbjct: 360 TIQFESASASIDKDSAALLDRLIETAMRCPNAKIEVAGHTDSD---GDPAFNQSLSEKRA 416 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 ++++G+S +R+ + G+ +D + NRRID +V Sbjct: 417 REVVDYMVRAGLSPERL-QAFGYGSKIPVAGNDTDAGKAKNRRIDFVV 463 >gi|329888485|ref|ZP_08267083.1| inner membrane lipoprotein yiaD [Brevundimonas diminuta ATCC 11568] gi|328847041|gb|EGF96603.1| inner membrane lipoprotein yiaD [Brevundimonas diminuta ATCC 11568] Length = 224 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S P + VL + VL ++ + GHTD+ N LS RA S Sbjct: 119 FATNQSDLDPRFLPVLDDVARVLNQYDRSMVDVVGHTDS---SGGDAINQPLSERRAASV 175 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 L+ GV +RI ++G + A+ + NRR++IL+ Sbjct: 176 AAHLINRGVMRERIY-VAGMSARAPIGSNATPEGKAQNRRVEILIRP 221 >gi|15641208|ref|NP_230840.1| putative lipoprotein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587785|ref|ZP_01677544.1| lipoprotein, putative [Vibrio cholerae 2740-80] gi|121728252|ref|ZP_01681285.1| lipoprotein, putative [Vibrio cholerae V52] gi|147673077|ref|YP_001216765.1| putative lipoprotein [Vibrio cholerae O395] gi|153819084|ref|ZP_01971751.1| lipoprotein, putative [Vibrio cholerae NCTC 8457] gi|153823238|ref|ZP_01975905.1| lipoprotein, putative [Vibrio cholerae B33] gi|227081367|ref|YP_002809918.1| putative lipoprotein [Vibrio cholerae M66-2] gi|229505212|ref|ZP_04394722.1| outer membrane protein [Vibrio cholerae BX 330286] gi|229511118|ref|ZP_04400597.1| outer membrane protein [Vibrio cholerae B33] gi|229518237|ref|ZP_04407681.1| outer membrane protein [Vibrio cholerae RC9] gi|229608231|ref|YP_002878879.1| outer membrane protein [Vibrio cholerae MJ-1236] gi|255745601|ref|ZP_05419549.1| outer membrane protein [Vibrio cholera CIRS 101] gi|262158324|ref|ZP_06029440.1| outer membrane protein [Vibrio cholerae INDRE 91/1] gi|262169483|ref|ZP_06037175.1| outer membrane protein [Vibrio cholerae RC27] gi|298498705|ref|ZP_07008512.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655673|gb|AAF94354.1| lipoprotein, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547949|gb|EAX58030.1| lipoprotein, putative [Vibrio cholerae 2740-80] gi|121629503|gb|EAX61929.1| lipoprotein, putative [Vibrio cholerae V52] gi|126510367|gb|EAZ72961.1| lipoprotein, putative [Vibrio cholerae NCTC 8457] gi|126519252|gb|EAZ76475.1| lipoprotein, putative [Vibrio cholerae B33] gi|146314960|gb|ABQ19499.1| putative lipoprotein [Vibrio cholerae O395] gi|227009255|gb|ACP05467.1| putative lipoprotein [Vibrio cholerae M66-2] gi|227013112|gb|ACP09322.1| putative lipoprotein [Vibrio cholerae O395] gi|229344952|gb|EEO09926.1| outer membrane protein [Vibrio cholerae RC9] gi|229351083|gb|EEO16024.1| outer membrane protein [Vibrio cholerae B33] gi|229357435|gb|EEO22352.1| outer membrane protein [Vibrio cholerae BX 330286] gi|229370886|gb|ACQ61309.1| outer membrane protein [Vibrio cholerae MJ-1236] gi|255736676|gb|EET92073.1| outer membrane protein [Vibrio cholera CIRS 101] gi|262022296|gb|EEY41005.1| outer membrane protein [Vibrio cholerae RC27] gi|262029765|gb|EEY48413.1| outer membrane protein [Vibrio cholerae INDRE 91/1] gi|297543038|gb|EFH79088.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 223 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + L + D+ V+ V + + + N F +S L+ + Sbjct: 85 QQEAELRKALLDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 139 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L + + I GHTD++ N LS RA S L+ GV+ R G Sbjct: 140 ILVEYPDTSLVIEGHTDST---GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIA-RGNG 195 Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342 +++ NRR++I + + Sbjct: 196 ERFPLCSNNTAEGRACNRRVEIQILPLK 223 >gi|120603950|ref|YP_968350.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|120564179|gb|ABM29923.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] Length = 364 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 17/130 (13%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA---- 281 + I+ +F + E +L L + + GH ASP R+ Sbjct: 113 VQILSIDADVLFGPGETRLSKEGERLLATFAPTLRTIEHPLLVAGH--ASPPRDEQGAGF 170 Query: 282 --------RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSAN 331 +W LSL RA S Y+ L GV R+ + GF + + AN Sbjct: 171 RLRAEGTLSPSWMLSLRRATSVYRALRDLGVPSSRLI-LEGFGDGHPRHDAFTATGRRAN 229 Query: 332 RRIDILVEDR 341 RR+D++++ R Sbjct: 230 RRVDLVLDKR 239 >gi|78189221|ref|YP_379559.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like [Chlorobium chlorochromatii CaD3] gi|78171420|gb|ABB28516.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like protein [Chlorobium chlorochromatii CaD3] Length = 422 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + PE++ + + +++ E S+ GHTD+ +N LS RA + Sbjct: 321 FDINKATIKPESMGTINYVVKMMQEHPELKFSVEGHTDSD---GADANNQTLSEARAQAI 377 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L++SG++++R++ G+ + ++ + NRR++ + Sbjct: 378 VNKLIESGIAKERLTS-KGWGESKPITNNETAEGKAQNRRVEFI 420 >gi|149371333|ref|ZP_01890819.1| outer membrane protein A [unidentified eubacterium SCB49] gi|149355471|gb|EDM44030.1| outer membrane protein A [unidentified eubacterium SCB49] Length = 560 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 93/270 (34%), Gaps = 20/270 (7%) Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 E + K+ + + + + + + + + S+ Sbjct: 294 TRVIEIPGETKMIKTTVMATPPTTRVIDVPAVTKTMTKKVMVTPPTTERIEIASKTAPVK 353 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 T + + + + ++ K+ K P I A + ++ LA S + Sbjct: 354 KTIFTNETTRVEEIPEITKTFTKRVMTTPPTTRAVPIDAQSKTLKVTKLASDASVEEEIV 413 Query: 207 VADNIVKGVLFETTRTGILI------SIIDQRNTPM-FDKSSSIPLPETIVVLQ-KIGEV 258 A T+ G+ ++++ + P+ ++ S+ + ++ ++ V Sbjct: 414 PATTTTVTKEVLQTKGGLTTWTEVECALVEYQALPINWNLGSATLTAQAKNIIDTRLMPV 473 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 LA + + I HTD+ R N LS RA + L G++ + +GF Sbjct: 474 LAQNPGVKLEIASHTDS---RGGKAANQDLSERRAQAVAVYLQSKGINNS-LLVANGFGE 529 Query: 318 HRLKIA-------SDPMNSANRRIDILVED 340 RL ++ ++ANRR + + + Sbjct: 530 TRLLNRCADGVSCTEKEHAANRRTEFRLIN 559 >gi|21242231|ref|NP_641813.1| OmpA family protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107654|gb|AAM36349.1| OmpA family protein [Xanthomonas axonopodis pv. citri str. 306] Length = 241 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G I++ + FD S P+ L + L + ++ + GHT Sbjct: 104 NTGIEVQRQGDNITLN-LPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + ++D + N Sbjct: 163 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQN 219 Query: 332 RRIDILVEDRQG 343 RR++I + + Sbjct: 220 RRVEIRLIPLRA 231 >gi|330951777|gb|EGH52037.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae Cit 7] Length = 344 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV +R++ + G+ R A++ + NRR++ Sbjct: 295 KQVLVNQYGVGANRVNSV-GYGESRPVADNATEAGRAVNRRVE 336 >gi|152999646|ref|YP_001365327.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185] gi|217974400|ref|YP_002359151.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223] gi|151364264|gb|ABS07264.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|217499535|gb|ACK47728.1| OmpA/MotB domain protein [Shewanella baltica OS223] Length = 369 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + + F S++ P ++++ L + E + I GH AS N LS Sbjct: 251 EDVGSIQFANDSAVVKPVFYKDIERLANYLNKNPEFTVEIAGH--ASHVGKPEY-NMVLS 307 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 RA + ++L+ G+S+ R++ G+ + +A D + ANRRI+ +V Sbjct: 308 DKRAAAVAKILVDKYGISQSRVTS-KGYGETQPLVAGDSKEAYAANRRIEAVVTT 361 >gi|111223898|ref|YP_714692.1| hypothetical protein FRAAL4505 [Frankia alni ACN14a] gi|111151430|emb|CAJ63147.1| hypothetical protein; putative signal peptide; putative OmpA/MotB domain [Frankia alni ACN14a] Length = 384 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S + P L + VL + + G+TD + N LSL+RA +A Sbjct: 281 FPVSGARLSPSAQARLDSVAAVLRGGDLAVLVGGYTDT---SGPSALNQALSLNRAQAAA 337 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L GV D + + +GF + +ANRRI+I+ Sbjct: 338 DYLTSRGVPAD-LVRAAGFGSREPVAGNGTPQGRAANRRIEII 379 >gi|319788654|ref|YP_004148129.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317467166|gb|ADV28898.1| OmpA/MotB domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 348 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + LPE+ + ++ E+L + + GHTD + A N RLS R+ + Sbjct: 247 FATDRTEILPESQPQIDQVVELLQQDPQLNLGVEGHTDDT---GDAGHNLRLSEGRSNAV 303 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 + L+ G+ R++ +GF R + + + NRR++++ Sbjct: 304 VKALVARGIDAARLTS-AGFGSTRPVADNGSEEGKARNRRVELV 346 >gi|325272915|ref|ZP_08139241.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51] gi|324101950|gb|EGB99470.1| OmpA/MotB domain protein [Pseudomonas sp. TJI-51] Length = 145 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F S+ P L + + I + G T Sbjct: 4 NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYQPLNNLASSFKQFNQNTIEVVGFT 62 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330 D++ + N LS RA + L GV R+ + G + ++ N + Sbjct: 63 DST---GSRQHNMDLSQRRAQAVSTYLTSQGVDSSRL-SVRGMGPDQPIASNADANGRAQ 118 Query: 331 NRRIDILVED 340 NRR+++ ++ Sbjct: 119 NRRVEVNLKP 128 >gi|229588852|ref|YP_002870971.1| hypothetical protein PFLU1321 [Pseudomonas fluorescens SBW25] gi|229360718|emb|CAY47576.1| putative outer membrane protein [Pseudomonas fluorescens SBW25] Length = 231 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 11/117 (9%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARD 283 I I D F S+ L + L + + + GHTD+ Sbjct: 120 IVIRDVH----FQFDSAQLTAADKTKLDTVATRLKQEAPSAQLRVSGHTDSV---GKDAY 172 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 N RLS RA+S L+ +GV ++G + + NRR +I + Sbjct: 173 NQRLSEKRAHSVTDYLIGAGVPRSNFVSVTGAGESHPVADNKTAEGRALNRRTEIQI 229 >gi|325923199|ref|ZP_08184883.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas gardneri ATCC 19865] gi|325546323|gb|EGD17493.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas gardneri ATCC 19865] Length = 249 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 E R G I++ + FD S P+ L + L + ++ + GHT Sbjct: 112 NTGIEVQRQGDNITLN-LPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHT 170 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D+ N RLS +RA + Q L GV +R+ + +G + +D + N Sbjct: 171 DSV---GSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNNTDAGRAQN 227 Query: 332 RRIDI 336 RR++I Sbjct: 228 RRVEI 232 >gi|323491313|ref|ZP_08096498.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546] gi|323314439|gb|EGA67518.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546] Length = 222 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 69/212 (32%), Gaps = 14/212 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C+ + +++ G+ S I + + + ++ + Sbjct: 15 SGCQATQRQNATTGETETNSATQGALIGAIAGAAVGLATGDDAKERRKHALIGAAGGAAV 74 Query: 201 STLSGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQ 253 G D + + +G+ + ++ N F SS L+ Sbjct: 75 GGGVGYYFDQQEAALRKQLLNSGVQVERVGENQLLLRLENGIGFQSSSYQLDSSIHNTLR 134 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + ++L + + I GHTD++ N LS RA S L+ GV+ R Sbjct: 135 GVAQILVEYPDTSLVIDGHTDST---GSDTTNQVLSERRAESVRSYLVSQGVAAGRAIA- 190 Query: 313 SGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G ++ + NRR++I + + Sbjct: 191 RGNGERYPLCTNSTTEGRACNRRVEIQILPLK 222 >gi|315223848|ref|ZP_07865696.1| inorganic diphosphatase [Capnocytophaga ochracea F0287] gi|314946178|gb|EFS98179.1| inorganic diphosphatase [Capnocytophaga ochracea F0287] Length = 919 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F S + L+ I +L + I + G+TD + N +LS R Sbjct: 811 DRTYFKTGSDELTEGSEQQLKNIVAILKAYPKAAIRLGGYTDNT---GSVEGNKKLSERR 867 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 A S L+ G ++ ++S A H L A+D + NRRIDI + + Sbjct: 868 ANSVLNKLVALGANKAQLSAQGYGAEHPLCPANDTPECKAKNRRIDIRLTAK 919 >gi|256820715|ref|YP_003141994.1| membrane-bound proton-translocating pyrophosphatase [Capnocytophaga ochracea DSM 7271] gi|256582298|gb|ACU93433.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga ochracea DSM 7271] Length = 919 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F S + L+ I +L + I + G+TD + N +LS R Sbjct: 811 DRTYFKTGSDELTEGSEQQLKNIVAILKAYPKAAIRLGGYTDNT---GSVEGNKKLSERR 867 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 A S L+ G ++ ++S A H L A+D + NRRIDI + + Sbjct: 868 ANSVLNKLVALGANKAQLSAQGYGAEHPLCPANDTPECKAKNRRIDIRLTAK 919 >gi|254447506|ref|ZP_05060972.1| OmpA family protein [gamma proteobacterium HTCC5015] gi|198262849|gb|EDY87128.1| OmpA family protein [gamma proteobacterium HTCC5015] Length = 1980 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 9/116 (7%) Query: 235 PMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFR----NIARDNWRLSL 289 P F+ S+ E +I +V + I++ GH D P R +I DN LSL Sbjct: 472 PRFESFSAELGEEDQQHFDQILSQVDKQRVQRITVIGHADTRPIRARSQSIYADNQALSL 531 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQ 342 RA A + + G+ D++ + G + S N+ANRR++I++E Q Sbjct: 532 ARANVAAEYARQRLGLEADKVD-VLGKGDSFPLLKGRSGEDNAANRRVEIVIESLQ 586 >gi|167913324|ref|ZP_02500415.1| OmpA family membrane protein [Burkholderia pseudomallei 112] Length = 542 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 424 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 480 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 481 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 529 >gi|332977323|gb|EGK14111.1| OmpA/MotB family protein [Psychrobacter sp. 1501(2011)] Length = 552 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 15/189 (7%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 +G D+ + ++K + ++A ++ + I++ + + DN+ Sbjct: 326 EGNDVRIDAPDQAQLDKLVADIKAAAPELNVIAAGPLDLDAEIKQSIANATTAM--DNLG 383 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + + + + +I+ F+ + VL + EV+ + + I GH Sbjct: 384 ENPDPKDVARALSLQVIN------FEVDKADIPEVNKAVLDRAVEVMKNVPNMQLMILGH 437 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329 TD+ N LS RA S Q L+ GV ++ G + N Sbjct: 438 TDSD---GDDAHNQELSQRRAESVKQYLVSKGVDASKLM-TKGMGETDPIATNQTDNGKF 493 Query: 330 ANRRIDILV 338 NRRI+ V Sbjct: 494 RNRRIEFTV 502 >gi|311104908|ref|YP_003977761.1| outer membrane protein A [Achromobacter xylosoxidans A8] gi|310759597|gb|ADP15046.1| outer membrane protein A [Achromobacter xylosoxidans A8] Length = 193 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ A N +LS RA S Sbjct: 87 FFDFDKSTLKPEGRQLLDQVAQQARGIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G ++ + NRR++I +V R+ Sbjct: 144 VKTYLVSKGIDPNRIY-TEGKGELNPIASNKTKEGRAQNRRVEIEIVGSRK 193 >gi|261210647|ref|ZP_05924939.1| outer membrane protein [Vibrio sp. RC341] gi|260840132|gb|EEX66712.1| outer membrane protein [Vibrio sp. RC341] Length = 223 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I GHTD++ Sbjct: 99 VQVVRVGENQLLLRMENGIGFTSSSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDST 158 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N LS RA S L+ GV+ R G ++ + NRR Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLAQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 214 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 215 VEIQILPLK 223 >gi|45659294|ref|YP_003380.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602540|gb|AAS72017.1| peptidoglycan-associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 428 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 11/128 (8%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 F+ G IS+ ++ F S L + +L + L + I I GHTD Sbjct: 309 FQELEKGKSISL----DSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTD-- 362 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-MNSANRR 333 ++DN LS +RA + L+K G+ RI G + +P + NRR Sbjct: 363 -LNGDSQDNLILSRNRANAVKDYLVKRGIDSQRII-TDGKGSSEPIVPMKNPETDYKNRR 420 Query: 334 IDILVEDR 341 + + R Sbjct: 421 TEFQIISR 428 >gi|24217036|ref|NP_714517.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] gi|24198445|gb|AAN51535.1| OmpA family protein [Leptospira interrogans serovar Lai str. 56601] Length = 428 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 11/128 (8%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 F+ G IS+ ++ F S L + +L + L + I I GHTD Sbjct: 309 FQELEKGKSISL----DSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTD-- 362 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDP-MNSANRR 333 ++DN LS +RA + L+K G+ RI G + +P + NRR Sbjct: 363 -LNGDSQDNLILSRNRANAVKDYLVKRGIDSQRII-TDGKGSSEPIVPMKNPETDYKNRR 420 Query: 334 IDILVEDR 341 + + R Sbjct: 421 TEFQIISR 428 >gi|107028365|ref|YP_625460.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116686361|ref|YP_839608.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|105897529|gb|ABF80487.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116652076|gb|ABK12715.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 220 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ P L + L + + + G+TDA+ N LS RA Sbjct: 118 FATDSAVLTPAATAALDTL---LNRQADRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ D + +G ++D + NRR++I ++ Sbjct: 172 DAVAGYLREHGLKADSFAA-AGHGEANPAASNDTAEGRARNRRVEISLQ 219 >gi|189475074|gb|ACE00211.1| OmpA [Vibrio alginolyticus] Length = 330 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA S L +G+ DR++ + G + NRR++++V Sbjct: 268 ERRAQSVADYLTAAGIGSDRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318 >gi|167896642|ref|ZP_02484044.1| OmpA family membrane protein [Burkholderia pseudomallei 7894] Length = 541 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 423 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 479 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 480 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 528 >gi|319944281|ref|ZP_08018557.1| outer membrane protein A [Lautropia mirabilis ATCC 51599] gi|319742576|gb|EFV94987.1| outer membrane protein A [Lautropia mirabilis ATCC 51599] Length = 220 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 F ++ E L I L + + GHTD+ N RLS+ RA + Sbjct: 111 FFGFDRAVLKDEGKQKLDDIVNQLDGVALEVIVAVGHTDSV---GPEAYNQRLSVRRAEA 167 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +R+ G + + + NRR++I +V RQ Sbjct: 168 VKAYLVSKGIEANRVY-TEGKGEAQPVADNKTKEGRAKNRRVEIEVVGSRQ 217 >gi|288917360|ref|ZP_06411727.1| OmpA/MotB domain protein [Frankia sp. EUN1f] gi|288351225|gb|EFC85435.1| OmpA/MotB domain protein [Frankia sp. EUN1f] Length = 409 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S L K+ + L + + GHTD++ N LS+DRA +A Sbjct: 307 FAVGESTLDASVRAGLDKVAQALLPGDLTVLVGGHTDST---GPLAFNQALSMDRARAAR 363 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L++ GV +R+ +++GF R + +ANRR+D+ Sbjct: 364 EYLVQRGVPAERV-RVAGFGPERPVADNATVAGRAANRRVDV 404 >gi|254848320|ref|ZP_05237670.1| lipoprotein [Vibrio cholerae MO10] gi|254844025|gb|EET22439.1| lipoprotein [Vibrio cholerae MO10] Length = 222 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + L + D+ V+ V + + + N F +S L+ + Sbjct: 84 QQEAELRKALLDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 138 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L + + I GHTD++ N LS RA S L+ GV+ R G Sbjct: 139 ILVEYPDTSLVIEGHTDST---GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIA-RGNG 194 Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342 +++ NRR++I + + Sbjct: 195 ERFPLCSNNTAEGRACNRRVEIQILPLK 222 >gi|310778794|ref|YP_003967127.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926] gi|309748117|gb|ADO82779.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926] Length = 208 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 +S ++ + K+ + + N + + A L+ I S ++ Sbjct: 18 SSADEETAMLNKMEKNLNKIEENNATTGSMIDQYKTRILDAKTNVANLEKDINAIDSFIN 77 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 ++ LI D +FD + S + +L + E L Sbjct: 78 PETVFEKNGVIVKRERDQLTLIMPTD----VVFDFNKSEIKEDFKPLLDSLYEALTIYKG 133 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + I GHTD N +LS RA SA + L+ G++ RI G + + Sbjct: 134 LSVKIDGHTDNI---GSYDYNLKLSQKRAESAKEYLVSKGLNAGRII-TEGHSFSTPAAS 189 Query: 324 SDPMNSA--NRRIDILVE 339 + NRRI+++++ Sbjct: 190 NATQAGRDKNRRIEVVIK 207 >gi|258626412|ref|ZP_05721259.1| putative lipoprotein [Vibrio mimicus VM603] gi|258581464|gb|EEW06366.1| putative lipoprotein [Vibrio mimicus VM603] Length = 223 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I GHTD++ Sbjct: 99 VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVAYPDTSLVIEGHTDST 158 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N LS RA S L+ GV+ R G +++ NRR Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNNTAEGRACNRR 214 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 215 VEIQILPLK 223 >gi|83717203|ref|YP_440080.1| hypothetical protein BTH_II1886 [Burkholderia thailandensis E264] gi|83651028|gb|ABC35092.1| OmpA domain protein [Burkholderia thailandensis E264] Length = 594 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + P+ + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 395 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 454 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L + + R + SG + + + NRR+D+L Sbjct: 455 ADELRATALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507 >gi|114321676|ref|YP_743359.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228070|gb|ABI57869.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 216 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 18/126 (14%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIAR 282 IS+ + +F S P L+ + E + V I + GHTD + A Sbjct: 95 RISV---DSEALFGFDSDELTPGGRANLRNVIERINAMERVDSIRVNGHTD--HIGSAAY 149 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSA-------NRR 333 N LS RA + +++ GV ++ I+ G+ R + SA NRR Sbjct: 150 -NQELSERRAAAVRTFMVQQGVDDNLITS-RGYGEDRPVKECPDNLSGSALIECLAPNRR 207 Query: 334 IDILVE 339 ++I VE Sbjct: 208 VEIHVE 213 >gi|153950607|ref|YP_001399766.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152962102|gb|ABS49563.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758] Length = 573 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD P +I +L + + A +I + GHTD A+ N LSL RA Sbjct: 445 SLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVAGHTD---ITGDAQANQILSLKRAE 501 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + +L S VS + G+ R ++ +ANRR++I + + Sbjct: 502 ALRDWMLSTSDVSPT-CFAVQGYGATRPVATNESAEGRAANRRVEISLVPQ 551 >gi|119357024|ref|YP_911668.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354373|gb|ABL65244.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266] Length = 369 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ PE+ V+ +I +++ + I GHTD+ N LS R+ + Sbjct: 268 FDTGNATLKPESNGVINEIVKMMNTYPVIRLRIEGHTDS---DGDTSANQILSEKRSAAV 324 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L+K G++ R+ IS F + + + NRR++ + Sbjct: 325 KAALIKRGIAAVRL-SISSFGETKPVADNTTSEGKANNRRVEFV 367 >gi|325103802|ref|YP_004273456.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324972650|gb|ADY51634.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 633 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 FD + ++ L + + L + T I I+GHTD + N+ LS +R Sbjct: 526 KNIFFDTNKYDIKDDSKSELAILIDFLNENKTVNIEIQGHTDNI---GDDKANFVLSENR 582 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S + L+ G+ R+ + GF ++D + NRR + L+ Sbjct: 583 AKSVLKYLVNEGIDSKRL-RYKGFGETAPIDSNDNIIGRANNRRTEFLI 630 >gi|257094585|ref|YP_003168226.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047109|gb|ACV36297.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 184 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ P+ L +G L + +I GH+D R N RLS RA Sbjct: 80 FETNSASLTPKGKQSLDVVGRALNSEKLTAYKFAIEGHSDP---RGGEDYNLRLSQARAE 136 Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 S L +S + R+ + G +L + P NRR+ I Sbjct: 137 SVVGYLEQSHQIEPARLKPV-GKGPTQLLNPARPEAPENRRVTI 179 >gi|94499177|ref|ZP_01305715.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Oceanobacter sp. RED65] gi|94428809|gb|EAT13781.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Oceanobacter sp. RED65] Length = 294 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 8/113 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLS 288 R+ F + + L I + EV I I GH+DA +N RLS Sbjct: 174 SRSKVFFPGGGAALDKQARKKLDLIALYVKADPEVQAIYIDGHSDAL---GRRYNNRRLS 230 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 DRA + L++ G+ + I A+ + NRR+ I +E Sbjct: 231 EDRALKVNEYLIERGLDAE-IITTRYHGERYPVASNATAAGRAQNRRVTIRLE 282 >gi|269122521|ref|YP_003310698.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] gi|268616399|gb|ACZ10767.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] Length = 358 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 9/107 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +P L+ I +L + I++ GHTD++ A N +LS++RA Sbjct: 240 FKVDGKVPNEAEQRDLRTIANILNAAVVDGGTINVVGHTDST---GSAAYNQKLSVERAQ 296 Query: 294 SAYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + ++L + G+ + I+G + ++ + NRR+++ Sbjct: 297 NVARLLREYGLKNTVKFGTITGKGLTQPMATNNTVEGRYQNRRVELF 343 >gi|153215326|ref|ZP_01949939.1| lipoprotein, putative [Vibrio cholerae 1587] gi|153826671|ref|ZP_01979338.1| lipoprotein, putative [Vibrio cholerae MZO-2] gi|153829618|ref|ZP_01982285.1| putative lipoprotein [Vibrio cholerae 623-39] gi|183179599|ref|ZP_02957810.1| lipoprotein, putative [Vibrio cholerae MZO-3] gi|229515575|ref|ZP_04405034.1| outer membrane protein [Vibrio cholerae TMA 21] gi|229520377|ref|ZP_04409802.1| outer membrane protein [Vibrio cholerae TM 11079-80] gi|229525804|ref|ZP_04415209.1| outer membrane protein [Vibrio cholerae bv. albensis VL426] gi|229529718|ref|ZP_04419108.1| outer membrane protein [Vibrio cholerae 12129(1)] gi|254226715|ref|ZP_04920292.1| lipoprotein, putative [Vibrio cholerae V51] gi|262191649|ref|ZP_06049827.1| outer membrane protein [Vibrio cholerae CT 5369-93] gi|297578794|ref|ZP_06940722.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|124114769|gb|EAY33589.1| lipoprotein, putative [Vibrio cholerae 1587] gi|125620776|gb|EAZ49133.1| lipoprotein, putative [Vibrio cholerae V51] gi|148874894|gb|EDL73029.1| putative lipoprotein [Vibrio cholerae 623-39] gi|149739533|gb|EDM53761.1| lipoprotein, putative [Vibrio cholerae MZO-2] gi|183013010|gb|EDT88310.1| lipoprotein, putative [Vibrio cholerae MZO-3] gi|229333492|gb|EEN98978.1| outer membrane protein [Vibrio cholerae 12129(1)] gi|229339385|gb|EEO04402.1| outer membrane protein [Vibrio cholerae bv. albensis VL426] gi|229342475|gb|EEO07468.1| outer membrane protein [Vibrio cholerae TM 11079-80] gi|229347344|gb|EEO12304.1| outer membrane protein [Vibrio cholerae TMA 21] gi|262032491|gb|EEY51051.1| outer membrane protein [Vibrio cholerae CT 5369-93] gi|297536388|gb|EFH75221.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|327483893|gb|AEA78300.1| Outer membrane protein [Vibrio cholerae LMA3894-4] Length = 223 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 + + L + D+ V+ V + + + N F +S L+ + Sbjct: 85 QQEAELRKALLDSGVQVVRVGENQLMLRME-----NGIGFTSNSYQLDSYIHKTLRGVAR 139 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L + + I GHTD++ N LS RA S L+ GV+ R G Sbjct: 140 ILVEYPDTSLVIEGHTDST---GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIA-RGNG 195 Query: 317 HHRLKIASDPMNSA--NRRIDILVEDRQ 342 +++ NRR++I + + Sbjct: 196 ERFPLCSNNTAEGRACNRRVEIQILPLK 223 >gi|254262577|ref|ZP_04953442.1| OmpA family protein [Burkholderia pseudomallei 1710a] gi|254213579|gb|EET02964.1| OmpA family protein [Burkholderia pseudomallei 1710a] Length = 542 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 424 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 480 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 481 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 529 >gi|167818176|ref|ZP_02449856.1| OmpA family membrane protein [Burkholderia pseudomallei 91] Length = 541 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 423 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 479 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 480 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 528 >gi|146306454|ref|YP_001186919.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145574655|gb|ABP84187.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 210 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S E+ ++ + + + + + GHTD+ N LS RA + Sbjct: 105 FDFDKSQVKQESYGDIKALADFMKQYPQTSTVVEGHTDSV---GSDAYNQGLSERRANAV 161 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 +VL+ + GV +R+ + G+ R A+ + NRR++ Sbjct: 162 REVLVNQYGVESNRVQAV-GYGESRPVADNATAEGRAINRRVE 203 >gi|212283809|gb|ACJ23322.1| outer membrane protein OmpA [Vibrio parahaemolyticus] Length = 301 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 183 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 239 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA + + +G+ DR++ + G + NRR++++V Sbjct: 240 ERRAQAVADYITGAGIDADRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 290 >gi|28901041|ref|NP_800696.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633] gi|153837129|ref|ZP_01989796.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810] gi|260362470|ref|ZP_05775403.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030] gi|260879890|ref|ZP_05892245.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034] gi|260894565|ref|ZP_05903061.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466] gi|260900439|ref|ZP_05908834.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037] gi|28809554|dbj|BAC62529.1| outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633] gi|149749546|gb|EDM60292.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810] gi|308086367|gb|EFO36062.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466] gi|308092443|gb|EFO42138.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034] gi|308107064|gb|EFO44604.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037] gi|308113361|gb|EFO50901.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030] Length = 329 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 ++ T F+ S+ L L + + I G+TD+ A N +LS Sbjct: 211 EEYGTGTFEFDSAKLTESVSERLDNFVSFLNEYPQAQVEITGYTDS---SGPAAYNQKLS 267 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 RA + + +G+ DR++ + G + NRR++++V Sbjct: 268 ERRAQAVADYITGAGIDADRLT-VKGMGEENPVADNSTREGREKNRRVEVVV 318 >gi|311104068|ref|YP_003976921.1| inner membrane lipoprotein YiaD [Achromobacter xylosoxidans A8] gi|310758757|gb|ADP14206.1| inner membrane lipoprotein YiaD [Achromobacter xylosoxidans A8] Length = 215 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 16/127 (12%) Query: 224 ILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + I +++ + + FD + P + VL + L E + GHTD Sbjct: 88 LGIDVVEMPDGSLKVNIPSGVSFDTDKTQLKPALLPVLDSVARSLNQHPELRAKVVGHTD 147 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSAN 331 ++ N LS++RA S L K GV+ R++ + G + A+ + N Sbjct: 148 ST---GALAHNQTLSVNRAKSVTDYLGKQGVAAGRLT-VEGRGPNDPIGDNATAEGRALN 203 Query: 332 RRIDILV 338 RR++I + Sbjct: 204 RRVEIYL 210 >gi|332532726|ref|ZP_08408600.1| outer membrane protein similar to peptidoglycan-associated (lipo)protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037753|gb|EGI74203.1| outer membrane protein similar to peptidoglycan-associated (lipo)protein [Pseudoalteromonas haloplanktis ANT/505] Length = 351 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++S + + ++K+ L + + + GHT A + W LS RA + Sbjct: 241 FPNNASAVSTQYLDDIEKVSAFLKEYPDTTVLLEGHTSA--VGKATYNKW-LSKKRADAV 297 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + L+ G++EDRI+ + G RLK ++ N+ NRR++ ++ + Sbjct: 298 AKQLVADGIAEDRITTV-GLGEERLKNDANTKAANAENRRVEAHIKTIK 345 >gi|110638407|ref|YP_678616.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281088|gb|ABG59274.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 509 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 N FD S+ E+ + L ++ E++ ++T + I HTD N +LS R Sbjct: 402 NNLFFDFDSASLTKESELELDRVIEMMKTNATMQVEISAHTDDM---GSDAYNQKLSQLR 458 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S + L G+ R+ G+ + +D + NRR++ + Sbjct: 459 AESVVKYLTLHGIITTRLVA-KGYGESVPSVPNDTEENRAKNRRVEFKI 506 >gi|167848084|ref|ZP_02473592.1| OmpA family protein [Burkholderia pseudomallei B7210] Length = 531 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 413 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 469 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 470 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 518 >gi|33603081|ref|NP_890641.1| putative outer membrane protein [Bordetella bronchiseptica RB50] gi|33568712|emb|CAE34470.1| putative outer membrane protein [Bordetella bronchiseptica RB50] Length = 215 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 + E + ++I + FD S P + VL + L E + GHTD+ Sbjct: 92 VVEMPDGSLKVNI---PSNVSFDTDKSQLKPALLPVLDSVARALNQHPELRTKVVGHTDS 148 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANR 332 + A N +LS++RA + L K GV++ R++ + G + A+ +ANR Sbjct: 149 T---GSAAHNQQLSVNRARAVTSYLGKQGVAQGRMT-VEGRGANDPVGDNATAEGRAANR 204 Query: 333 RIDILV 338 R+++ + Sbjct: 205 RVEVYL 210 >gi|300902742|ref|ZP_07120699.1| OmpA family protein [Escherichia coli MS 84-1] gi|300405215|gb|EFJ88753.1| OmpA family protein [Escherichia coli MS 84-1] Length = 211 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + +++ G+TD++ ++ N RLS RA S L+ GV RI + G Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALITQGVDASRI-RTQGLGPANPI 197 Query: 322 IASDPMN--SANRR 333 ++ + NRR Sbjct: 198 ASNSTAEGKAQNRR 211 >gi|262371750|ref|ZP_06065029.1| outer membrane protein A [Acinetobacter junii SH205] gi|262311775|gb|EEY92860.1| outer membrane protein A [Acinetobacter junii SH205] Length = 346 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S P+ + K+ E LA I GHTD + + N RLSL RA Sbjct: 227 RVFFDTNKSDIKPQYKSEIAKVAEKLAEYPNATARIEGHTDNT---GPRKLNERLSLARA 283 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ +LV+ Sbjct: 284 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFAAITGSRTVLVQPG 342 Query: 342 Q 342 Q Sbjct: 343 Q 343 >gi|78067236|ref|YP_370005.1| OmpA/MotB family protein [Burkholderia sp. 383] gi|77967981|gb|ABB09361.1| OmpA/MotB family protein [Burkholderia sp. 383] Length = 214 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + SI G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFQPLLNDLATTLNQNPQVTASIVGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALAQRGVNGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAAQA 213 >gi|85706177|ref|ZP_01037272.1| OmpA domain protein [Roseovarius sp. 217] gi|85669341|gb|EAQ24207.1| OmpA domain protein [Roseovarius sp. 217] Length = 219 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V T + I+ +F S L K+ + L Sbjct: 85 EAELRQQLDNDVQIVNTGDRL---ILTMPQDILFPVDSFTVASVLRDDLLKVAQSLQAYP 141 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + + GHTD+ A N LS RA + VL GVS R+ + G + Sbjct: 142 DTTVQVVGHTDSD---GAASYNQSLSERRANAVADVLASGGVSYGRL-RAFGRGEDQPVA 197 Query: 323 AS--DPMNSANRRIDILVED 340 ++ + NRR++I++ Sbjct: 198 SNLTPQGKAQNRRVEIVILP 217 >gi|118578882|ref|YP_900132.1| OmpA/MotB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501592|gb|ABK98074.1| OmpA/MotB domain protein [Pelobacter propionicus DSM 2379] Length = 417 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ L+++ + LA +I GHTD N +LS RA S Sbjct: 311 FDTNKSNIKPQYNDELKRVADFLAEFPTAKGAIEGHTDNV---GGKAYNMKLSQRRANSV 367 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L+K+ V+ +RIS G + ++ + NRRI+ Sbjct: 368 RSYLIKTFNVAPERISA-KGHGLTKPVASNKTADGRKQNRRIE 409 >gi|315922614|ref|ZP_07918854.1| predicted protein [Bacteroides sp. D2] gi|313696489|gb|EFS33324.1| predicted protein [Bacteroides sp. D2] Length = 405 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + I+ V+ + T G I +D N F+ S + L KI ++ + + I Sbjct: 280 EEILDLVVAQKTIAGKTICAVDVIN---FEFGKSAINKNSYAYLDKIAMLMQRTNLSVEI 336 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 +GHTD N LS RA + Y L+K GV ++ + + + ++D Sbjct: 337 KGHTDNV---GKEDFNMELSRKRAKAVYDYLIKKGVGSSKL-SYTYYGMTKPIASNDTEE 392 Query: 329 SA--NRRIDILVE 339 NRR++ ++ Sbjct: 393 GRLINRRVEFEIK 405 >gi|288801213|ref|ZP_06406668.1| lipoprotein PG3 [Prevotella sp. oral taxon 299 str. F0039] gi|288331824|gb|EFC70307.1| lipoprotein PG3 [Prevotella sp. oral taxon 299 str. F0039] Length = 225 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A + + E T G+ + + +F + ++ + L K + Sbjct: 70 MDKVAQETAAKVKSAKIEEVTDANGLKAVKVTFDSGILFSTNKAVLSQTSKNDLAKFATI 129 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + + I GHTD++ I N LS RA S L GV+ + + G Sbjct: 130 LKENRDCHVDIYGHTDSTGNDGI---NIPLSNSRARSVVNYLESCGVTGSQFKNVQGKGS 186 Query: 318 HRLKIASDPMNSA--NRRIDILVEDRQG 343 ++ + NRR+++ + Q Sbjct: 187 SEPVASNSTASGRQQNRRVEVYLYASQA 214 >gi|260174346|ref|ZP_05760758.1| OmpA/MotB domain-containing protein [Bacteroides sp. D2] Length = 375 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 + I+ V+ + T G I +D N F+ S + L KI ++ + + I Sbjct: 250 EEILDLVVAQKTIAGKTICAVDVIN---FEFGKSAINKNSYAYLDKIAMLMQRTNLSVEI 306 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 +GHTD N LS RA + Y L+K GV ++ + + + ++D Sbjct: 307 KGHTDNV---GKEDFNMELSRKRAKAVYDYLIKKGVGSSKL-SYTYYGMTKPIASNDTEE 362 Query: 329 SA--NRRIDILVE 339 NRR++ ++ Sbjct: 363 GRLINRRVEFEIK 375 >gi|296390816|ref|ZP_06880291.1| hypothetical protein PaerPAb_21793 [Pseudomonas aeruginosa PAb1] Length = 237 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G I +I F S+ P L + + I I G Sbjct: 97 MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +TD++ + N LS RA S L GV R+ G + ++ Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211 Query: 329 SANRRIDI 336 + NRR+++ Sbjct: 212 AQNRRVEV 219 >gi|150025563|ref|YP_001296389.1| lipoprotein YiaD precursor [Flavobacterium psychrophilum JIP02/86] gi|149772104|emb|CAL43580.1| Probable lipoprotein YiaD precursor [Flavobacterium psychrophilum JIP02/86] Length = 231 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 18/152 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ A+KIS +L G E GI + + + FD + S Sbjct: 79 NKMDKQARKISESLPGA---------KVERVGEGIRLVLGENAIR--FDTNKSTLTASAK 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ +V + I I G+TD+ N +LS RA S L G++ R Sbjct: 128 ANLDKLVKVFTEYPDTDIQIYGYTDS---SGADDYNLKLSEQRAASVKTYLSAKGLASTR 184 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + SG ++ + S NRR++ + Sbjct: 185 FN-TSGLGEADPIAPNETADGKSQNRRVEFAI 215 >gi|152986735|ref|YP_001350031.1| hypothetical protein PSPA7_4687 [Pseudomonas aeruginosa PA7] gi|150961893|gb|ABR83918.1| lipoprotein, putative [Pseudomonas aeruginosa PA7] Length = 237 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G I +I F S+ P L + + I I G Sbjct: 97 MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +TD++ + N LS RA S L GV R+ G + ++ Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211 Query: 329 SANRRIDI 336 + NRR+++ Sbjct: 212 AQNRRVEV 219 >gi|15596030|ref|NP_249524.1| hypothetical protein PA0833 [Pseudomonas aeruginosa PAO1] gi|107100290|ref|ZP_01364208.1| hypothetical protein PaerPA_01001315 [Pseudomonas aeruginosa PACS2] gi|116048755|ref|YP_792445.1| hypothetical protein PA14_53500 [Pseudomonas aeruginosa UCBPP-PA14] gi|254239185|ref|ZP_04932508.1| hypothetical protein PACG_05376 [Pseudomonas aeruginosa C3719] gi|254245120|ref|ZP_04938442.1| hypothetical protein PA2G_06007 [Pseudomonas aeruginosa 2192] gi|313105709|ref|ZP_07791972.1| hypothetical protein PA39016_000110006 [Pseudomonas aeruginosa 39016] gi|9946728|gb|AAG04222.1|AE004518_3 hypothetical protein PA0833 [Pseudomonas aeruginosa PAO1] gi|115583976|gb|ABJ09991.1| hypothetical protein PA14_53500 [Pseudomonas aeruginosa UCBPP-PA14] gi|126171116|gb|EAZ56627.1| hypothetical protein PACG_05376 [Pseudomonas aeruginosa C3719] gi|126198498|gb|EAZ62561.1| hypothetical protein PA2G_06007 [Pseudomonas aeruginosa 2192] gi|310878474|gb|EFQ37068.1| hypothetical protein PA39016_000110006 [Pseudomonas aeruginosa 39016] Length = 237 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G I +I F S+ P L + + I I G Sbjct: 97 MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +TD++ + N LS RA S L GV R+ G + ++ Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211 Query: 329 SANRRIDI 336 + NRR+++ Sbjct: 212 AQNRRVEV 219 >gi|325288156|ref|YP_004263946.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323610|gb|ADY31075.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 638 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 11/113 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P + LQK+ VL + I I HTD+ R N LS +RA S Sbjct: 529 FDYDKYDITPRAEIELQKVLFVLKEFPKTKIKIESHTDS---RGKDAYNLELSDNRAKST 585 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 + L+ GV DRI +GF +LK S+ + NRR D ++ + Sbjct: 586 RRYLVSKGVDIDRIESANGFGELKLKNKCSNGVKCSEQEHLVNRRSDFIIVAK 638 >gi|269119353|ref|YP_003307530.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] gi|268613231|gb|ACZ07599.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] Length = 178 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++++ +I++ L+ + E +I + + FD S PE Sbjct: 25 KQMRNDTIRINAMEVELINEKTEPAEKKEVKEEKKVIRL--GEDKLYFDFDDSRVKPEYY 82 Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L+ EV+ +S+ ++I G+TD+ + A N +LSL RA + LM+ G++E+ I Sbjct: 83 GELRAAAEVIKNSSMRVNITGYTDS---KGSAEYNEKLSLRRAEAVKAKLMEFGLNENYI 139 Query: 310 SKISGFAHHRLKIAS-------DPM-NSANRRIDI 336 + + G + +P + NRRI++ Sbjct: 140 AGVRGLGESNPIAPNTKSDGKDNPEGRAKNRRIEL 174 >gi|71736714|ref|YP_274287.1| OprF [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486264|ref|ZP_05640305.1| OprF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627226|ref|ZP_06460180.1| OprF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650179|ref|ZP_06481522.1| OprF [Pseudomonas syringae pv. aesculi str. 2250] gi|298486585|ref|ZP_07004644.1| outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557267|gb|AAZ36478.1| OprF [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158911|gb|EFH99972.1| outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324974|gb|EFW81046.1| OprF [Pseudomonas syringae pv. glycinea str. B076] gi|320329128|gb|EFW85126.1| OprF [Pseudomonas syringae pv. glycinea str. race 4] gi|330867622|gb|EGH02331.1| OprF [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330881064|gb|EGH15213.1| OprF [Pseudomonas syringae pv. glycinea str. race 4] gi|330888250|gb|EGH20911.1| OprF [Pseudomonas syringae pv. mori str. 301020] gi|330988403|gb|EGH86506.1| OprF [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010567|gb|EGH90623.1| OprF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 344 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATEAGRAVNRRVE 336 >gi|24375803|ref|NP_719846.1| OmpA family protein [Shewanella oneidensis MR-1] gi|24350753|gb|AAN57290.1|AE015865_4 OmpA family protein [Shewanella oneidensis MR-1] Length = 201 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 209 DNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 + KG + G + SI +++ +F +S+ PE ++++ L + Sbjct: 51 NETAKGAGTDNYGCGQIKSINERKEINVLFPNNSAYIAPEYYPQIEEVAIFLRQYPTTKV 110 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD 325 +I GHT + N LS +RA + VL + G+ R++ I G+ R + Sbjct: 111 TIEGHTSRT---GTDETNKELSQERANAVTAVLAERFGIDRSRLTAI-GYGSSRPIVLEQ 166 Query: 326 PMNS--ANRRI 334 + NRR+ Sbjct: 167 TPEAEIRNRRV 177 >gi|242281267|ref|YP_002993396.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242124161|gb|ACS81857.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 276 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 17/156 (10%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + L+ + + + FE+ R + I+ +F S+ E +L + VL Sbjct: 87 EPIKPLLWEFAEEDLRFESNRF---VQILSIGADVLFTPDSTSLSIEGTRILDTVLPVLK 143 Query: 261 HSTEVISIRGHTDASP------FRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + GHT +R RD +W++SL+R+ + Y L+++G+ + + Sbjct: 144 RVKHPVLVAGHTSILRDELGEDYRVEDRDLTPDISWKISLNRSLAVYNYLIRNGMDSE-M 202 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 K+ F R + + NRR+D++++ R Sbjct: 203 LKMEAFGKFRPRHPNSTPEGRKMNRRVDLVLDTRSA 238 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + P W I ++D MT+++ FF+++ ++ D+ K + Sbjct: 3 RKKKPPEPEGQPLWLITFSDLMTLMLTFFVLLVSMSVVDERRKLVVLGSIIGTFGFGSKG 62 Query: 80 SKGIFDEQNP 89 + D Q+ Sbjct: 63 YDVLSDTQSR 72 >gi|170703075|ref|ZP_02893898.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170132016|gb|EDT00521.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 215 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + S+ G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQLTASVVGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALVQRGVAGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQ 212 >gi|16265946|gb|AAL16679.1|AF358690_1 flagellar motor rotation protein [Helicobacter hepaticus] Length = 98 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 8/100 (8%) Query: 238 DKSSSIPLPETIVV-LQKIGEVLAHST--EVISIRGHTDASP--FRNIARDNWRLSLDRA 292 D S+ + + LQ++ ++ I +RG+TD +P + +DN+ LS R+ Sbjct: 1 DSGSAEINNSDVFLYLQRMSAIIKKLPDYVKIDVRGYTDNAPLPVGSRYKDNYELSSARS 60 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 S + L+K+G+S +RI SG+ H+ +D ++ NR Sbjct: 61 LSVMKNLIKNGISPERI-SFSGYGEHQAVAPND--SALNR 97 >gi|257451630|ref|ZP_05616929.1| Outer membrane porin F [Fusobacterium sp. 3_1_5R] gi|257466946|ref|ZP_05631257.1| Outer membrane porin F [Fusobacterium gonidiaformans ATCC 25563] Length = 183 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 15/158 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGV--LFETTRTGILIS------IIDQRNTPMFDKSSSI 243 ++DL+ + + + D K + + + G+ I I+ +FD + Sbjct: 27 IRDLSTEGNQNFAIEDIDAAKKPLEDIIVFNQDGVTIRREGNNLILSMPELILFDFNKYE 86 Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 L+ + L A++ I I G+TD F N LS++RA + L+ Sbjct: 87 VKNGIKPSLRTLANALGANADIKIKIDGYTD---FIGSEGYNLELSVNRAKAIKSYLVAQ 143 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 G E+ I I G+ ++D + NRR++ ++ Sbjct: 144 GAIENNI-SIEGYGKQNPVASNDTESGRARNRRVEFII 180 >gi|332561144|ref|ZP_08415462.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N] gi|332274942|gb|EGJ20258.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N] Length = 453 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277 + I + + +F + + P+ ++ + VLA + + GHTD P Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNPDYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385 Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N N LS RA + +L++ GV I G A + + NRR Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADTEPVADNATRAGRAQNRR 444 Query: 334 IDILVEDR 341 ++I +E R Sbjct: 445 VEIRIEKR 452 >gi|117918603|ref|YP_867795.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117610935|gb|ABK46389.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 487 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ S LPE V++ + L + + + GHTD + N LS RA + Sbjct: 380 LFEYDSDKLLPEAQPVVEVLASYLKANPKRAFYVVGHTDD---KGNQAYNQGLSQRRAVA 436 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 ++L S G+ ++ + G H + + NRR+++++ Sbjct: 437 IVKLLTTSHGIQTQQLEAV-GIGEHAPVASNSDEAGQQQNRRVELVLRS 484 >gi|254228271|ref|ZP_04921700.1| OmpA family protein [Vibrio sp. Ex25] gi|262394176|ref|YP_003286030.1| outer membrane protein [Vibrio sp. Ex25] gi|151939344|gb|EDN58173.1| OmpA family protein [Vibrio sp. Ex25] gi|262337770|gb|ACY51565.1| outer membrane protein [Vibrio sp. Ex25] Length = 204 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + +F S + P ++++ + L I I+G+ + A N L Sbjct: 76 QEMQIRVLFANDSDVINPIFTEQIRELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 132 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S RA + + LM +G+S DR++ I G+ L ++ NRR+ V +G Sbjct: 133 SKRRAENVRKELMMNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 189 >gi|83720098|ref|YP_441413.1| ompA family protein [Burkholderia thailandensis E264] gi|83653923|gb|ABC37986.1| ompA family protein [Burkholderia thailandensis E264] Length = 261 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 154 FATDQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 211 VNALAQRGVAATRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 259 >gi|74318813|ref|YP_316553.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] gi|74058308|gb|AAZ98748.1| outer membrane protein [Thiobacillus denitrificans ATCC 25259] Length = 266 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE L + E L + + GHTD+ + N LS RA + Sbjct: 163 FAYDKATLRPEAREKLDQAVETLKGWGEGTVEVGGHTDS---KGSEAYNMELSRRRAEAV 219 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + L+ G+ +++ + + +D NRR+++ Sbjct: 220 REYLIGKGIPAEQLV-TKAYGESQPIADNGNDIGRFKNRRVEL 261 >gi|70728655|ref|YP_258404.1| OmpA family protein [Pseudomonas fluorescens Pf-5] gi|68342954|gb|AAY90560.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 229 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 11/117 (9%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARD 283 I I D F S+ L I L S+ + + GHTD+ Sbjct: 118 IVIRDVH----FHFDSAKLTDADKTKLNTIVTRLKQEASSAQLRVTGHTDSV---GSDAY 170 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 N +LS RA+S + L+ +G+ ++G + + + NRR +I + Sbjct: 171 NQKLSDKRAHSVVEYLISNGIPRSSFVSVTGAGESKPVADNKTAEGRAMNRRTEIQI 227 >gi|304397573|ref|ZP_07379450.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB] gi|304354745|gb|EFM19115.1| type IV / VI secretion system protein, DotU family [Pantoea sp. aB] Length = 405 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 14/169 (8%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 Y P + L DL ++++ ++ + G + I + Sbjct: 234 YQTPLPQITAGRRPSSPQALLDLRQRLNDVIA-------AGQLEVSDGAFGSKVIIPADK 286 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDR 291 +F + ++ P +L ++ + I + TD P N ++ S R Sbjct: 287 ---LFAEQGTVINPVGRALLARVSNAMKDVKGTILVSVFTDDHPVDNSRFASSYEFSFAR 343 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 A + Q+L +++ + G + +D + NRR++I + Sbjct: 344 ARTITQLLQVQ-LNDGHTVRSEGRGDSDPLLPNDSSENRTRNRRVEITL 391 >gi|218778089|ref|YP_002429407.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759473|gb|ACL01939.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] Length = 377 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S E ++KI +L + + + GHTD + N +LSL+RA + Sbjct: 275 FDFDSYEIKKEYQSCIKKIVAILRANPGLKLIVEGHTDN---KGSKAYNDKLSLNRADAV 331 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 ++ G+ +R+S G+ + ++D + NRR+ Sbjct: 332 IDSMVGKGIMPERLSA-KGYGFSKPVASNDTEEGRARNRRV 371 >gi|218885327|ref|YP_002434648.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756281|gb|ACL07180.1| OmpA/MotB domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 345 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F +S+ +L + +L + + GHT + N +LS RA S Sbjct: 244 FALNSAKLDATATSILVETAAILKSKKGSVEVAGHTCSL---GTDEYNQKLSEARAKSVK 300 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L+K GV R+ G+ + K + + NRR+++ Sbjct: 301 DFLVKQGVESSRLI-TKGYGESKPKYDNSTEETRKLNRRVEL 341 >gi|163738369|ref|ZP_02145784.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] gi|161388290|gb|EDQ12644.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] Length = 211 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ VL K + + GHTDA + N L L RA +A Sbjct: 68 FAFDSAQLDGNARAVLDKQAHWIRQFPEVRFRVFGHTDA--VGSAGY-NKSLGLRRARAA 124 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ + F + I + NRR Sbjct: 125 VNYLVSRGISRSRLQAVVSFGETQPLIPTSDRERRNRR 162 >gi|304384331|ref|ZP_07366742.1| lipoprotein PG3 [Prevotella marshii DSM 16973] gi|304334647|gb|EFM00929.1| lipoprotein PG3 [Prevotella marshii DSM 16973] Length = 226 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 11/152 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 K+ + V + V+ E T G+ + + +F + + + L Sbjct: 71 MDKVKAQTQAQVQNAKVE----EVTDVNGLKAVKVTFDSGILFALNKAELNATSKNELMN 126 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 VL +T+ + I+G+TD++ N LS RA + L + GV + + Sbjct: 127 FSNVLKKNTDCQVDIQGYTDST---GNDDINLPLSNSRAQAVVSYLAQCGVPYSQFKNVK 183 Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 G+ + NRR+++ + + Sbjct: 184 GYGSSNPVADNSTEAGRKQNRRVEVYIYAGEA 215 >gi|299140724|ref|ZP_07033862.1| lipoprotein PG3 [Prevotella oris C735] gi|298577690|gb|EFI49558.1| lipoprotein PG3 [Prevotella oris C735] Length = 225 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 7/140 (5%) Query: 208 ADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 A I + E T G+ + + +F + + + L K +VL +++ Sbjct: 77 AAQIRNAKVEEVTDANGLKAVKVTFDSGILFATNQATLTSSSKNDLAKFSKVLKDNSDCH 136 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I GHTD + I N LS RA S L + GVS + + G + Sbjct: 137 VDIYGHTDTTGNDGI---NIPLSNRRAESVVNYLKQCGVSGSQFQNVVGKGSAEPVADNS 193 Query: 326 PMNSA--NRRIDILVEDRQG 343 NRR+++ + Q Sbjct: 194 TAAGRKQNRRVEVYLYASQA 213 >gi|317402072|gb|EFV82666.1| hypothetical protein HMPREF0005_00359 [Achromobacter xylosoxidans C54] Length = 495 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 26/138 (18%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--------------- 264 T G+ +SIID+ F S+I P+ + + + Sbjct: 92 TTAGLSVSIIDKGEQ--FAPGSAILTPQAAKAMADLADTYRDVAAASASAKDRDAVNARN 149 Query: 265 ---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD + ++ N LS RA + ++ + G D+I G Sbjct: 150 NAMRILLVGHTDDT---GSSQLNADLSEARARAVAKIFVSRGFRADQIF-YQGAGETLPI 205 Query: 322 IASD--PMNSANRRIDIL 337 + + NRR++++ Sbjct: 206 ADNHSAAGRARNRRVEVV 223 >gi|268316295|ref|YP_003290014.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333829|gb|ACY47626.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252] Length = 209 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 19/157 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+ A ++ L E GIL++ + +FD S+ PE Sbjct: 60 QRMDRQAAEMQQEL---------PDARIERVGEGILVTF---DSGILFDFDSATLRPEAR 107 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+++ E L E + I GHTD++ N RLS RA +A LM+ G+ R Sbjct: 108 EKLRRLAESLKKYPETEVLIVGHTDST---GPEEYNQRLSERRAEAAAAFLMQQGIRPSR 164 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 I + G ++ NRR++I + + Sbjct: 165 I-RTMGKGETEPIASNATEEGRQLNRRVEIAIFASEA 200 >gi|260891212|ref|ZP_05902475.1| OmpA family protein [Leptotrichia hofstadii F0254] gi|260859239|gb|EEX73739.1| OmpA family protein [Leptotrichia hofstadii F0254] Length = 172 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 5/108 (4%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 N FD +S+ E L+K+ + + + ISI G+TD+ + N LSL Sbjct: 65 DANQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDS---KGTREYNRELSLR 121 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 RA S + L+ G+S +RI + G +D +ANRRI+I Sbjct: 122 RAESLEEKLIDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169 >gi|329117988|ref|ZP_08246701.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465876|gb|EGF12148.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 226 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + + R+G I ++ N F S+ L + L + +SI Sbjct: 85 ENLANTGVDVQRSGDQIKLVMPENVT-FATGSATLSTNAQNALAAAAQTLTQYPDTTLSI 143 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GHTD + N LS RA + L GV+ R+ G + ++ Sbjct: 144 NGHTDNT---GSDAINAPLSQRRAQAVASFLQSRGVNGSRL-ATYGHGSRQPVASNATAE 199 Query: 327 MNSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 200 GRAQNRRVEILINPDQ 215 >gi|49081952|gb|AAT50376.1| PA0833 [synthetic construct] Length = 238 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G I +I F S+ P L + + I I G Sbjct: 97 MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +TD++ + N LS RA S L GV R+ G + ++ Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTAQGVDGTRL-STRGMGPDQPIASNSTADGR 211 Query: 329 SANRRIDI 336 + NRR+++ Sbjct: 212 AQNRRVEV 219 >gi|126463896|ref|YP_001045009.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105707|gb|ABN78237.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 254 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 24/249 (9%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P ++ D + + + + + + + +SL Sbjct: 23 PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAVADVPDSLE 82 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + L + + + + L LA + ++S GL+ Sbjct: 83 APAGEDPGLRPTASTDSAPGETGRPVLGLPQGADRLAAADPLPERRETAEVSPESFGLLD 142 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267 + V F S++ + +L ++ V+ S + Sbjct: 143 PALQVNVRIH------------------FSFDSAVLAADQTPLLAQLCTVMKASDIRLFQ 184 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326 I GHTDA N +LSL RA + L G++ +R+ + G L DP Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLADKKDP 240 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 241 RSGENRRVE 249 >gi|85715944|ref|ZP_01046921.1| hypothetical protein NB311A_14045 [Nitrobacter sp. Nb-311A] gi|85697142|gb|EAQ35023.1| hypothetical protein NB311A_14045 [Nitrobacter sp. Nb-311A] Length = 314 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ PE+ L +I ++L+ + I GHTD+ N LS RA + Sbjct: 212 FDTDKAVIKPESRPTLDQIAKLLSGQPGFNVYIVGHTDSQ---GTPAHNLELSRRRAEAV 268 Query: 296 YQVLMK-SGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDIL 337 + L++ +++ R+ + GF +D + NRR++++ Sbjct: 269 AEDLVRTYKIAKARLNTAGVGFLAPVGSNGTDAGRALNRRVELV 312 >gi|126463889|ref|YP_001045002.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105700|gb|ABN78230.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 453 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277 + I + + +F + + P+ ++ + VLA + + GHTD P Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNPDYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385 Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N N LS RA + +L++ GV I G A + + NRR Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADTEPVADNATRAGRAQNRR 444 Query: 334 IDILVEDR 341 ++I +E R Sbjct: 445 VEIRIEKR 452 >gi|332978756|gb|EGK15448.1| outer membrane porin OprF [Psychrobacter sp. 1501(2011)] Length = 304 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 102/262 (38%), Gaps = 19/262 (7%) Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 PE +++ +DE ++ V++ I Q + ++ + + + L Sbjct: 52 PEGTTRLVFYRPMDEDDSRTGVNIAINDDYQVSLHPGSFTTVYSCIGDNRLSNRSSELNT 111 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA- 208 + K + +++ E N ++K K ++ + + S +S ++ Sbjct: 112 NDLLLKHKTSTLKDQETQYYEINVNKNRVAKSKRVSEDQARAAMAGMTYQSHQISKVIPN 171 Query: 209 -----DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + + I++ +FD S+ P+ + L E + + Sbjct: 172 CAPRPQPKPQPISVPVLEEKVTINL-----QVLFDNDKSVVKPQYLRDLSTAAEFMQKYS 226 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK 321 + + I GHTD++ + A N LS RA++ +V + + G+S RI + G+ R Sbjct: 227 DTTVVIEGHTDSN--ASDAY-NIALSKRRAHAVKEVFVNQYGISPARIQAV-GYGESRPI 282 Query: 322 IASDPMNSA--NRRIDILVEDR 341 ++ NRR+ +++ + Sbjct: 283 ASNATAEGRQMNRRVVAVIQQK 304 >gi|183222805|ref|YP_001840801.1| hypothetical protein LEPBI_I3466 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781227|gb|ABZ99525.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 461 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + + E T+ IS+ ++ F+++SS+ E+ + L I + L ++ Sbjct: 332 ASVPKQENLVQKKLEETK---KISL----DSVYFERASSVLKSESSIPLDSIVDYLHENS 384 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + I GHTD DN LS +RA S Q L+ GV +R+ G + + Sbjct: 385 DQKMKIIGHTD---LTGTYDDNMVLSKERAESVKQYLVSKGVDPNRLV-TEGKGPTQPMV 440 Query: 323 --ASDPMNSANRRIDILVED 340 + + NRR + ++ + Sbjct: 441 QGTDEASSKKNRRTEFVLLN 460 >gi|189912837|ref|YP_001964392.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777513|gb|ABZ95814.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 423 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + + E T+ IS+ ++ F+++SS+ E+ + L I + L ++ Sbjct: 294 ASVPKQENLVQKKLEETK---KISL----DSVYFERASSVLKSESSIPLDSIVDYLHENS 346 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + + I GHTD DN LS +RA S Q L+ GV +R+ G + + Sbjct: 347 DQKMKIIGHTD---LTGTYDDNMVLSKERAESVKQYLVSKGVDPNRLV-TEGKGPTQPMV 402 Query: 323 --ASDPMNSANRRIDILVED 340 + + NRR + ++ + Sbjct: 403 QGTDEASSKKNRRTEFVLLN 422 >gi|183222022|ref|YP_001840018.1| hypothetical protein LEPBI_I2664 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912089|ref|YP_001963644.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776765|gb|ABZ95066.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780444|gb|ABZ98742.1| Putative outer membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 618 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 6/112 (5%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 N F SS E+ L ++ +L +T + I GHTD ++ N +LSL+ Sbjct: 509 MNNLFFAFRSSEFAKESEPELDRLAGILKKTTNLKVLIEGHTDNVGTKSA---NQKLSLE 565 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 RA S L ED + G + + + NRR+ + + Sbjct: 566 RANSVAFYLKSKHKIEDSRISVVGLGPSNPIAENGSEEGRAVNRRVVFKILE 617 >gi|77465494|ref|YP_354997.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides 2.4.1] gi|77389912|gb|ABA81096.1| OmpA/MotB domain protein [Rhodobacter sphaeroides 2.4.1] Length = 254 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 24/249 (9%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P ++ D + + + + + + + +SL Sbjct: 23 PTGAGAEGLTDAELLGLFHRQRDAFAAARSGNGQARGLKLVTVDRIGPAPAMADVPDSLG 82 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + L + + + + L LA ++S GL+ Sbjct: 83 APAGEDPGLRPTASTDSAPGETGRPVLGLPQGADRLAAADPPPEGRETAEVSPESFGLLD 142 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-S 267 + V F S++ + +L ++ V+ S + Sbjct: 143 PALQVNVRIH------------------FAFDSAVLAADQTPLLAQLCTVMKASDIRLFQ 184 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326 I GHTDA N +LSL RA + L G++ +R+ + G L DP Sbjct: 185 IVGHTDA---AGSEAYNQQLSLLRAEEVRRYLTGPCGIAPERLRAV-GMGERFLADKKDP 240 Query: 327 MNSANRRID 335 + NRR++ Sbjct: 241 RSGENRRVE 249 >gi|167561951|ref|ZP_02354867.1| ompA family protein [Burkholderia oklahomensis EO147] gi|167569201|ref|ZP_02362075.1| ompA family protein [Burkholderia oklahomensis C6786] Length = 215 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATDQYAVTPAFTPLLNDLASTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 + + GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNAMSQRGVAASRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213 >gi|70734242|ref|YP_257882.1| OmpA family protein [Pseudomonas fluorescens Pf-5] gi|68348541|gb|AAY96147.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 164 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K FE T G +F + ++Q+IG+ L + + + Sbjct: 38 VLKQEGFELTDEGWA---FGLSGKVLFGSDVETLNQASTEIVQRIGKALLSVDIQKVRVD 94 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 GHTDA N +LS+ RA S +VL + G+ E+ I ++ G ++ + Sbjct: 95 GHTDA---SGKEAYNVQLSVRRAKSVVKVLTQVGMREENI-QLRGLGSSEPVASNSTVAG 150 Query: 330 A--NRRIDILV 338 NRR+ I+V Sbjct: 151 RTENRRVSIVV 161 >gi|84515980|ref|ZP_01003341.1| OmpA family protein [Loktanella vestfoldensis SKA53] gi|84510422|gb|EAQ06878.1| OmpA family protein [Loktanella vestfoldensis SKA53] Length = 218 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 18/210 (8%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 QS++ + + G + ++ L + + L Sbjct: 23 PGAPNQSQNTRQGAMIGALGGAAAGALIGNDGTVRDRNRAALIGAALGAGVGGGIGNSLD 82 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 A+++ L V T +++ + +F +S+ ++ L Sbjct: 83 RQAEELRRALRN--------DVGVSNNGTNLVVVLSQD---LLFATNSTQIGAQSQNDLM 131 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + L + + I++ GHTD A N LS RA S VL GVS R+ I Sbjct: 132 IVARSLTNYPDSTINVIGHTDNV---GSASFNQDLSERRAQSVAGVLRSGGVSPGRVRSI 188 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVED 340 G ++ ++ NRR++I++ Sbjct: 189 -GAGLYQPIASNATAEGRQLNRRVEIIITP 217 >gi|256422985|ref|YP_003123638.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256037893|gb|ACU61437.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 1026 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + ++ L K+ +L AH + + GHTD N LS R+ + Sbjct: 920 FASAKAEIAVSSLPSLDKMAALLQAHREWQLLLSGHTDNE---GTETFNQTLSEKRSEAV 976 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 Q L+ GV +RI+ G+ + +S+ NRR+++ + Sbjct: 977 RQYLVTKGVDAERIT-TKGYGQSKPLTTNSSEAGRGKNRRVEMEI 1020 >gi|167722027|ref|ZP_02405263.1| OmpA family membrane protein [Burkholderia pseudomallei DM98] Length = 531 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 413 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 469 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 470 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 518 >gi|163856192|ref|YP_001630490.1| outer membrane protein A precursor [Bordetella petrii DSM 12804] gi|163259920|emb|CAP42221.1| outer membrane protein A precursor [Bordetella petrii] Length = 193 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ + N LS RA S Sbjct: 87 FFDFDKSTLKPEGRQLLDQVAQQAQGIDLETIIAVGHTDSI---GTEKYNQGLSERRAAS 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ GV +RI G + ++ + NRR++I +V R+ Sbjct: 144 VKSYLVSKGVDPNRIY-TEGKGELQPVASNKTREGRAQNRRVEIEVVGSRR 193 >gi|315918088|ref|ZP_07914328.1| outer membrane porin F [Fusobacterium gonidiaformans ATCC 25563] gi|317058194|ref|ZP_07922679.1| outer membrane porin F [Fusobacterium sp. 3_1_5R] gi|313683870|gb|EFS20705.1| outer membrane porin F [Fusobacterium sp. 3_1_5R] gi|313691963|gb|EFS28798.1| outer membrane porin F [Fusobacterium gonidiaformans ATCC 25563] Length = 189 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 15/158 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGV--LFETTRTGILIS------IIDQRNTPMFDKSSSI 243 ++DL+ + + + D K + + + G+ I I+ +FD + Sbjct: 33 IRDLSTEGNQNFAIEDIDAAKKPLEDIIVFNQDGVTIRREGNNLILSMPELILFDFNKYE 92 Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 L+ + L A++ I I G+TD F N LS++RA + L+ Sbjct: 93 VKNGIKPSLRTLANALGANADIKIKIDGYTD---FIGSEGYNLELSVNRAKAIKSYLVAQ 149 Query: 303 GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 G E+ I I G+ ++D + NRR++ ++ Sbjct: 150 GAIENNI-SIEGYGKQNPVASNDTESGRARNRRVEFII 186 >gi|293604168|ref|ZP_06686576.1| outer membrane protein A [Achromobacter piechaudii ATCC 43553] gi|292817393|gb|EFF76466.1| outer membrane protein A [Achromobacter piechaudii ATCC 43553] Length = 193 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I GHTD+ A N +LS RA S Sbjct: 87 FFDFDKSTLKPEGRQLLDQVAQQARGIELETIIAVGHTDS--IGTEAY-NQKLSERRAAS 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G ++ + NRR++I +V R+ Sbjct: 144 VKTYLVSKGIDPNRIY-TEGKGELNPIASNKTKEGRAQNRRVEIEIVGSRK 193 >gi|170691850|ref|ZP_02883014.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170143134|gb|EDT11298.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 168 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N G+ G+ + + +FD S + V+ + +L S + I + Sbjct: 33 NRAAGIEVAPVADGVAVKL---PEKALFDFDKSAVRADASAVVDRSAVLLKRSKKPIIVE 89 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 G+TD N +LS RA + L+ GV +R+ + G A++ ++D Sbjct: 90 GYTDNV---GTLEYNQQLSEARAVAVGYALVGRGVPMERV-RTKGNAYNNPIASNDTPEG 145 Query: 328 NSANRRIDILV 338 + NRR +I+V Sbjct: 146 RALNRRTEIVV 156 >gi|319795926|ref|YP_004157566.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315598389|gb|ADU39455.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 207 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSL 289 QR T F+ + P + ++ + + LA S I + GHTD + N +LS Sbjct: 100 QRYTVFFEVGGTTLTPASQQIMTEALAAALARSGGDIVVTGHTDT---KGNGESNDQLSR 156 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 RA Q+ ++ +R+ + G L + + NRR+ I V Sbjct: 157 RRAQEVVQLFVEQRFPANRVEAV-GRGERDLAVPTADEVDEPRNRRVTIEV 206 >gi|167826566|ref|ZP_02458037.1| OmpA family membrane protein [Burkholderia pseudomallei 9] Length = 531 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 413 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 469 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 470 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 518 >gi|91228645|ref|ZP_01262561.1| putative outer membrane protein [Vibrio alginolyticus 12G01] gi|91187796|gb|EAS74112.1| putative outer membrane protein [Vibrio alginolyticus 12G01] Length = 204 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + +F S + P + ++ + L I I+G+ + A N L Sbjct: 76 QEMQIRVLFANDSDVINPIFTQQILELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 132 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S RA + + LMK+G+S DR++ I G+ L ++ NRR+ V +G Sbjct: 133 SKRRAENVRKELMKNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 189 >gi|256823021|ref|YP_003146984.1| OmpA/MotB domain-containing protein [Kangiella koreensis DSM 16069] gi|256796560|gb|ACV27216.1| OmpA/MotB domain protein [Kangiella koreensis DSM 16069] Length = 330 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + E+ L +I ++L + + + + GH+D N LS RA S Sbjct: 228 FDTNKASIKAESKPTLDEIAKLLKDNPDLKLLVVGHSDNQ---GDFDYNIDLSKRRAESV 284 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337 Q L+ GV+ R+ G+A ++ + NRR++++ Sbjct: 285 KQALVSDYGVNAARLKPWGVGYAAPVASNKAEQGRAKNRRVELV 328 >gi|87122282|ref|ZP_01078164.1| OmpA family protein [Marinomonas sp. MED121] gi|86162425|gb|EAQ63708.1| OmpA family protein [Marinomonas sp. MED121] Length = 204 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 8/113 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD P L+++ L + + I GHTD N LS RA Sbjct: 73 KVLFDTGKHEVKPAFYSELRELASFLKKNPASSVIIEGHTDNV---GSKTSNQTLSFQRA 129 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + V+ ++ +R+ + GF +++ ANRR+ V RQ Sbjct: 130 SAIAAVITDKFKIAPNRV-QAKGFGETSPIASNETHSGREANRRVVAEVFSRQ 181 >gi|260432355|ref|ZP_05786326.1| inner membrane lipoprotein YiaD [Silicibacter lacuscaerulensis ITI-1157] gi|260416183|gb|EEX09442.1| inner membrane lipoprotein YiaD [Silicibacter lacuscaerulensis ITI-1157] Length = 223 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 17/203 (8%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + + + + G + + + L + +L A ++ Sbjct: 31 DDPNQNAKQGAILGGLIGAGVGAIANDSDPGLGALAGAAIGAAGGGLIGNQLDRQAAELR 90 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L+ G+ +++++ N FD S+ P L ++G+ L Sbjct: 91 QQLAN-------DGITIVNAGDRLIVTV---PNDITFDTDSATVRPALRADLVRVGQNLV 140 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + + I GHTD+ A N LS RA + +L +GVS RI+ I G ++ Sbjct: 141 NYPKSNVQIIGHTDSD---GDAGYNQALSERRASAVADILHANGVSYARITTI-GRGENQ 196 Query: 320 LKIAS--DPMNSANRRIDILVED 340 ++ + NRR++I++ Sbjct: 197 PIASNLTPEGKAQNRRVEIVIVP 219 >gi|313675999|ref|YP_004053995.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312942697|gb|ADR21887.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 671 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 N F S L + L ++ EV+ +++ + I GHTD++ N LS R Sbjct: 565 NNVFFAFDSHELLGSSKSELNRMVEVMNDNSQIEVVIIGHTDST---GPEEYNQVLSEKR 621 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A S L ++G+ E+R+ G + +D + NRR++ VE Sbjct: 622 AQSVVNYLTQNGIDEERLE-YLGKGENEPAYPNDTRENRAKNRRVNFKVER 671 >gi|281425749|ref|ZP_06256662.1| lipoprotein PG3 [Prevotella oris F0302] gi|281400157|gb|EFB30988.1| lipoprotein PG3 [Prevotella oris F0302] Length = 225 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 7/140 (5%) Query: 208 ADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 A I + E T G+ + + +F + + + L K +VL +++ Sbjct: 77 AAQIRNAKVEEVTDANGLKAVKVTFDSGILFATNQATLTSSSKNDLAKFSKVLKDNSDCH 136 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I GHTD + I N LS RA S L + GVS + + G + Sbjct: 137 VDIYGHTDTTGNDGI---NIPLSNRRAESVVNYLKQCGVSGSQFKNVVGKGSAEPVADNS 193 Query: 326 PMNSA--NRRIDILVEDRQG 343 NRR+++ + Q Sbjct: 194 TAAGRKQNRRVEVYLYASQA 213 >gi|255535532|ref|YP_003095903.1| membrane-bound proton-translocating pyrophosphatase [Flavobacteriaceae bacterium 3519-10] gi|255341728|gb|ACU07841.1| Pyrophosphate-energized proton pump [Flavobacteriaceae bacterium 3519-10] Length = 912 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P L + E++ I + G+TD + A N +LS RA + Sbjct: 808 FQSGSSDLKPGAENALANLAEIMNDHPNVRIKLGGYTDDT---GNADTNLKLSNLRAQTT 864 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK---IASDPMNSANRRIDILVED 340 L++ G++ DRI G+ +D + NRRID+ V Sbjct: 865 KLKLLEMGIAADRIE-TEGYGPLFPVCEANDTDECKAQNRRIDVRVLS 911 >gi|83949579|ref|ZP_00958312.1| OmpA family protein [Roseovarius nubinhibens ISM] gi|83837478|gb|EAP76774.1| OmpA family protein [Roseovarius nubinhibens ISM] Length = 171 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ P LQ+ + +I GHTD+ R N LSL RA S Sbjct: 73 LFATDSANISPSGRARLQQFFRDANAVSYII--TGHTDS---RASDAYNMNLSLRRANSV 127 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 +V +++G RI+ + G+ K ++ ANRR++I+ Sbjct: 128 ARVAVQTG---ARIADVRGYGERMPKASNATAAGMQANRRVEII 168 >gi|167921266|ref|ZP_02508357.1| OmpA family protein [Burkholderia pseudomallei BCC215] Length = 524 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 406 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 462 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 463 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSPSGRAQNRRVEVLLIP 511 >gi|148555237|ref|YP_001262819.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148500427|gb|ABQ68681.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 222 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S P+ L K+ L+ + + + GHTD++ N LS +RA + Sbjct: 114 FATNSYEVQPQFRTTLDKVASTLSEYGKTYVDVYGHTDST---GSDAINEPLSRNRAEAV 170 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 L GV+ RI GF + ++ ANRR++I + + Sbjct: 171 ANYLSGHGVAAARIG-TQGFGSRQPVASNATPDGRQANRRVEIKIVPIK 218 >gi|119776228|ref|YP_928968.1| OmpA family protein [Shewanella amazonensis SB2B] gi|119768728|gb|ABM01299.1| OmpA family protein [Shewanella amazonensis SB2B] Length = 222 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I I++ N F + P + VL + V ++ +++ G+TD+ Sbjct: 99 VSVTRNGDNI-ILNMPNDVTFAVDKTDLSPRAMQVLDSVALVAKEYSKTRLNVLGYTDS- 156 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRI 334 N RLS RA L+ GV+ R+S + G A A+ + NRR+ Sbjct: 157 --SGADSYNLRLSQVRASEVGNYLLSKGVAAARVSTQGMGEASPIASNATAEGRAQNRRV 214 Query: 335 DILVED 340 +I++ Sbjct: 215 EIILTP 220 >gi|15596974|ref|NP_250468.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa PAO1] gi|116049726|ref|YP_791468.1| major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|152985208|ref|YP_001348883.1| outer membrane protein OprF precursor [Pseudomonas aeruginosa PA7] gi|218892271|ref|YP_002441138.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa LESB58] gi|254234871|ref|ZP_04928194.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa C3719] gi|254240119|ref|ZP_04933441.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa 2192] gi|296389835|ref|ZP_06879310.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa PAb1] gi|313110468|ref|ZP_07796353.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa 39016] gi|130680|sp|P13794|PORF_PSEAE RecName: Full=Outer membrane porin F; Flags: Precursor gi|9947757|gb|AAG05166.1|AE004603_6 Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa PAO1] gi|151508|gb|AAA25973.1| porin protein F precursor [Pseudomonas aeruginosa] gi|4186419|gb|AAD11568.1| major outer membrane protein OprF precursor [Pseudomonas aeruginosa PAO1] gi|115584947|gb|ABJ10962.1| major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|126166802|gb|EAZ52313.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa C3719] gi|126193497|gb|EAZ57560.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa 2192] gi|150960366|gb|ABR82391.1| outer membrane protein OprF precursor [Pseudomonas aeruginosa PA7] gi|218772497|emb|CAW28279.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa LESB58] gi|310882855|gb|EFQ41449.1| Major porin and structural outer membrane porin OprF precursor [Pseudomonas aeruginosa 39016] Length = 350 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 244 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAYNQKLSERRANAV 300 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL+ + GV R++ + G+ R A+ + NRR++ Sbjct: 301 RDVLVNEYGVEGGRVNAV-GYGESRPVADNATAEGRAINRRVE 342 >gi|330958963|gb|EGH59223.1| OprF [Pseudomonas syringae pv. maculicola str. ES4326] Length = 344 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFNKSVVKPNSYGDIKNLADFMQQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A++ + NRR++ Sbjct: 295 KQVLVNQYGVGAGRVNSV-GYGESRPVADNATEAGRAVNRRVE 336 >gi|239820234|ref|YP_002947419.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239805087|gb|ACS22153.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 276 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 14/111 (12%) Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + LPE L + + + I + G+TD N LSL RA + Sbjct: 167 FDGRSLADLLPEGRRKLDALAGDIKAAD-AIKVTGYTDRL---GSQAYNSALSLARANTV 222 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRIDILV 338 L+++GV +I ++ G K+ + +A NRR++I V Sbjct: 223 RDYLVQAGVPAQKI-QVQGKGESEPKVQCTQTARAALIDCLAPNRRVEIEV 272 >gi|330943087|gb|EGH45518.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 344 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATEAGRAVNRRVE 336 >gi|325297323|ref|YP_004257240.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324316876|gb|ADY34767.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170] Length = 398 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ S E+ L KI ++ ++ + +RGHTD A N LS RA + Y Sbjct: 297 FEFDKSTIKKESYPYLDKIVRLMKNTPIHVVVRGHTDNV---GDADYNMELSKKRAEAVY 353 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+K+GV + + R +D NRR++ + + Sbjct: 354 NYLLKAGVEPSHL-SYEYYGMTRPISTNDTPEGRLMNRRVEFEITE 398 >gi|323720608|gb|EGB29686.1| outer membrane protein A ompA [Mycobacterium tuberculosis CDC1551A] Length = 291 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L + ++I G+TD + N LS RA Sbjct: 190 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 246 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ D I+ + G ++ + NRR++I+V Sbjct: 247 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 290 >gi|167839008|ref|ZP_02465785.1| hypothetical protein Bpse38_20639 [Burkholderia thailandensis MSMB43] Length = 560 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + P+ + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 373 FDVGKAKVRPDFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARTV 432 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L + + R + SG + + + NRR+D+L Sbjct: 433 ADELRTTALPGGARAPENAVQRSIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 485 >gi|27365951|ref|NP_761479.1| outer membrane protein [Vibrio vulnificus CMCP6] gi|27362100|gb|AAO11006.1| Outer membrane protein [Vibrio vulnificus CMCP6] Length = 280 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++KRL L +++ LS D + I ID + F +S+ Sbjct: 115 QRKRLHQLEQQLDYVLSHTRCVPPRDEDAFRFQLDIVNELYDILNIDNQ----FAVNSAE 170 Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L K +L H+ +++ GH DA+ N +L++DRA + L Sbjct: 171 INPKYMGHLAKAANILREHTALTLTVTGHADAT---GNEAYNEKLAMDRAEQVKRYLAIF 227 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 G+ +RI+ S + NRR+ I ++ Sbjct: 228 GLDPNRITTYS-LGEKLPLFDGESAAVRLTNRRVSIEIQS 266 >gi|115526883|ref|YP_783794.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520830|gb|ABJ08814.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 465 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + +++ +L ++ E + S+ VI I GHTD A N LS RA + Sbjct: 363 FESGKATIDGDSLGLLDRLIETAMRCSSAVIEIAGHTDGD---GEAAANKALSERRAQAV 419 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 ++K+G+ DR + GF + +D + NRRI+ V Sbjct: 420 VDYMVKAGLPADRFHPV-GFGSAQPVASNDNDEGKAQNRRIEFTVRP 465 >gi|107101208|ref|ZP_01365126.1| hypothetical protein PaerPA_01002240 [Pseudomonas aeruginosa PACS2] Length = 331 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 225 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAYNQKLSERRANAV 281 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL+ + GV R++ + G+ R A+ + NRR++ Sbjct: 282 RDVLVNEYGVEGGRVNAV-GYGESRPVADNATAEGRAINRRVE 323 >gi|221369488|ref|YP_002520584.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] gi|221162540|gb|ACM03511.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 453 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277 + I + + +F + + P+ ++ + VLA + + GHTD P Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNPDYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385 Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N N LS RA + +L++ GV I G A + + NRR Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADTEPVADNATRAGRAQNRR 444 Query: 334 IDILVEDR 341 ++I +E R Sbjct: 445 VEIRIEKR 452 >gi|217077698|ref|YP_002335416.1| motility protein B [Thermosipho africanus TCF52B] gi|217037553|gb|ACJ76075.1| motility protein B [Thermosipho africanus TCF52B] Length = 288 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265 +++ V E G LI+I D +F+ S+ E +L+K+G V+ H+T V Sbjct: 87 ISEEYKGKVTVEERDEGTLITISDLD---IFNPGSARLTAEAKKLLEKLGAVIIEHTTNV 143 Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVL 299 + I G+ + P +I + NW LS RA S Sbjct: 144 LEIYGYANEIPVPENSIYQSNWHLSSARASSVVYFF 179 >gi|162452025|ref|YP_001614392.1| hypothetical protein sce3752 [Sorangium cellulosum 'So ce 56'] gi|161162607|emb|CAN93912.1| putative membrane protein [Sorangium cellulosum 'So ce 56'] Length = 207 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ +S LPE+ VL + E L +V + + GHTD+ N LS RA + Sbjct: 81 FETNSDKLLPESDEVLNLVDEFLKQREDVSLLRVEGHTDSD---GEDAANQTLSEKRAMA 137 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 + L+ G R + GF + ++ + NRR + +G Sbjct: 138 VARWLVAKGNDCKRFIAV-GFGETKPVADNNTPEGKAQNRRTGFFIAAIKG 187 >gi|89092082|ref|ZP_01165037.1| hypothetical protein MED92_07941 [Oceanospirillum sp. MED92] gi|89083817|gb|EAR63034.1| hypothetical protein MED92_07941 [Oceanospirillum sp. MED92] Length = 218 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 8/136 (5%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + ++G R G I +I F +S P VL + +VL Sbjct: 81 QEALLRQELEGTGVRVERIGDSIRLI-MPGNITFALNSDQIAPSFYSVLDSVAKVLVKFD 139 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK- 321 + +++ G TD++ N +LS RA L+ SG+S RI+ G+ Sbjct: 140 QTELNVDGFTDST---GSFEYNQQLSERRAARVGDYLVSSGISRLRINA-KGYGERYPIA 195 Query: 322 -IASDPMNSANRRIDI 336 + + NRR++I Sbjct: 196 DNKTAAGRAQNRRVEI 211 >gi|119468232|ref|ZP_01611358.1| putative outer membrane protein; signal peptide [Alteromonadales bacterium TW-7] gi|119448225|gb|EAW29489.1| putative outer membrane protein; signal peptide [Alteromonadales bacterium TW-7] Length = 351 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + + ++ L + + + GHT A A N LS RA S Sbjct: 241 FPNDKAAVSQRYLDDIDQVASFLKDYPDTTVLLEGHTSAV---GKATYNKMLSKKRADSV 297 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 + L+ G++ DRI+ + G RLK ++ + NRR++ ++ + Sbjct: 298 AKQLIADGIASDRITTV-GLGEERLKNEANTAAAHAENRRVEAHIKTIK 345 >gi|118591925|ref|ZP_01549320.1| possible outer membrane protein OprF [Stappia aggregata IAM 12614] gi|118435568|gb|EAV42214.1| possible outer membrane protein OprF [Stappia aggregata IAM 12614] Length = 194 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ S+ + I+ LQ +G+ L I GHTD R A N LS RA+ Sbjct: 88 FEFDSASLTNDGILTLQALGQALQDPRLKNMRFQIAGHTD---LRGTADYNLDLSKRRAF 144 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + L G+ R +P + NRR++I+ Sbjct: 145 MVAEFLAAFYTIPRGQLVPVGYGESRPVDPGNPSSGRNRRVEII 188 >gi|325105502|ref|YP_004275156.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324974350|gb|ADY53334.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 442 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +SS+ L ++ L A ++ I + GH A N +LS+DRA S Sbjct: 341 FEFNSSVLRTSAYPTLDRVSSSLRADKSKSIQLDGHASAE---GTEAYNMQLSIDRANSV 397 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L+ SGV RI + G+ R ++ NRR++ Sbjct: 398 KTYLVNSGVDAKRI-AVKGYGESRPIASNATEEGRIKNRRVE 438 >gi|167905004|ref|ZP_02492209.1| OmpA family protein [Burkholderia pseudomallei NCTC 13177] Length = 524 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 235 PMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P + + +LA+ + + I GH D+ N++LS RA Sbjct: 406 SLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADS---SGSDAANFQLSEARA 462 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + GV + R + G +D + NRR+++L+ Sbjct: 463 RAIRDWFVDQGVLKTRFI-VQGAGDTHPIADNDSSSGRAQNRRVEVLLIP 511 >gi|313802740|gb|EFS43958.1| OmpA family protein [Propionibacterium acnes HL110PA2] Length = 368 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDAS 275 T+ + I D + +FD S + P ++ + + L + I + G+TD+ Sbjct: 248 RVTKESMKI---DLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS- 303 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NR 332 A N LS RA S +VL I+ ++ G ++D NR Sbjct: 304 --SGSASHNLDLSRRRAASGAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNR 359 Query: 333 RIDILVED 340 R+ I V++ Sbjct: 360 RVTITVKE 367 >gi|237803660|ref|ZP_04591245.1| OprF [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025642|gb|EGI05698.1| OprF [Pseudomonas syringae pv. oryzae str. 1_6] Length = 344 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFNKSVVKPNSYGDIKNLADFMQQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A++ + NRR++ Sbjct: 295 KQVLVNQYGVGAGRVNSV-GYGESRPVADNATEAGRAVNRRVE 336 >gi|121610060|ref|YP_997867.1| OmpA/MotB domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121554700|gb|ABM58849.1| OmpA/MotB domain protein [Verminephrobacter eiseniae EF01-2] Length = 242 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ N RLS+ RA + Sbjct: 134 FFDFDKSVIKPEGKAKLDDLVSKVKDINLEVIIAVGHTDSV---GTDAYNQRLSVRRAEA 190 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L+ G+ ++R+ G + + + NRR++I V + Sbjct: 191 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTSEGRAKNRRVEIEVVGTRA 240 >gi|308376544|ref|ZP_07439229.2| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu008] gi|308350673|gb|EFP39524.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu008] Length = 320 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L + ++I G+TD + N LS RA Sbjct: 219 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 275 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ D I+ + G ++ + NRR++I+V Sbjct: 276 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 319 >gi|327404809|ref|YP_004345647.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320317|gb|AEA44809.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 454 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +S PE+ VL++I L+ + + I GHTD+ N LS RA + Sbjct: 351 LFASNSDQLKPESYGVLKEIATALSENPAVRVKIVGHTDS---DGEESFNAELSKKRALA 407 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 Q L+ + R+ G + ++ + NRR++ L Sbjct: 408 VKQALISEFKIEASRME-TDGKGENEPTDSNATSVGKANNRRVEFL 452 >gi|320156464|ref|YP_004188843.1| outer membrane protein SypB [Vibrio vulnificus MO6-24/O] gi|319931776|gb|ADV86640.1| outer membrane protein SypB [Vibrio vulnificus MO6-24/O] Length = 280 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++KRL L +++ LS D + I ID + F +S+ Sbjct: 115 QRKRLHQLEQQLDYVLSHTRCVPPRDEDAFRFQLDIVNELYDILNIDNQ----FAVNSAE 170 Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L K +L H+ +++ GH DA+ N +L++DRA + L Sbjct: 171 INPKYMGHLAKAANILREHTALTLTVTGHADAT---GNEAYNEKLAMDRAEQVKRYLAIF 227 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 G+ +RI+ S + NRR+ I ++ Sbjct: 228 GLDPNRITTYS-LGEKLPLFDGESAAVRLTNRRVSIEIQS 266 >gi|256422968|ref|YP_003123621.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256037876|gb|ACU61420.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 499 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS L I + + + + GHTD + A +N LS+ RA + Sbjct: 393 LFKFNSSELNKNLYSSLDSLIKRIPRDGSIQLQVNGHTDNA--GTSAYNN-SLSMKRANA 449 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + + G+ D I I+G + + NRR++I++ Sbjct: 450 VAGYMQEHGLGND-IRLITGVGESQPVADNQSAAGRRRNRRVEIII 494 >gi|325297821|ref|YP_004257738.1| OmpA/MotB domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317374|gb|ADY35265.1| OmpA/MotB domain protein [Bacteroides salanitronis DSM 18170] Length = 239 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 20/159 (12%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K+ + + A +I V DN + T +GI +F SSS Sbjct: 74 KKMDKAAEQAAQIEGAEVEQVTDNNGLQAVKVTFDSGI-----------LFATSSSDLST 122 Query: 247 ETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQVL 299 L K VL + + ++I G+TD + ++N + N LS RA S L Sbjct: 123 SAKSALSKFANNVLIQNPDMDVAIYGYTDNTGWKNSTAEQSVQKNLELSQSRAQSVSNYL 182 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + G + +I + G +++ NRR+++ Sbjct: 183 RECGTTTSQIKTVEGLGESNPVADNSTEAGRQENRRVEV 221 >gi|302185648|ref|ZP_07262321.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae pv. syringae 642] Length = 344 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ + A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGETKPVADNATEAGRAVNRRVE 336 >gi|150005847|ref|YP_001300591.1| OmpA family outer membrane protein [Bacteroides vulgatus ATCC 8482] gi|149934271|gb|ABR40969.1| outer membrane protein, OmpA family [Bacteroides vulgatus ATCC 8482] Length = 239 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 ++ K K ++ A+ + + + +N ++ V T +GI +F+ ++ Sbjct: 71 LIGKKMDKAAEEAAQIQGAQVEQVTDNNGLQAVKV-TFDSGI-----------LFNTGNA 118 Query: 243 IPLPETIVVLQKIG-EVLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDRAYSA 295 + L K VL + + +SI G+TD +RN + N LS +RA S Sbjct: 119 ALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSIQKNLNLSQERAQSV 178 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L+ GVS +I + G +D NRR+++ Sbjct: 179 ASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEV 221 >gi|88810227|ref|ZP_01125484.1| OmpA/MotB [Nitrococcus mobilis Nb-231] gi|88791857|gb|EAR22967.1| OmpA/MotB [Nitrococcus mobilis Nb-231] Length = 263 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 84/216 (38%), Gaps = 13/216 (6%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL-SKEKILAMKRK 189 + +S Q+ + ++ + + L + I + E + ++I+ + Sbjct: 54 LRRAQDSLQAAQTAWTEEQNQARAEHLAYTAQRHAEIAQAEAAKQAAIVQSQQIMKQRDT 113 Query: 190 KRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 RLQ ++ + + + V + + + T GI++++ + +F S+ Sbjct: 114 LRLQSRSQLVETQQRQIEVLREQLAELKPKQTEQGIMLTL----SHVLFAFDSARLQSAA 169 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 L K+ L + + I G+TD++ A N RLS RA S + + GV Sbjct: 170 QAPLDKLATYLRERPQIQVKIVGYTDST---GAANYNQRLSKRRAQSVADAMAQRGVERA 226 Query: 308 RISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 + ++ G ++ NRR++ + ++ Sbjct: 227 SM-RVVGRGESNPVASNATEQGRQLNRRVEFTLLNQ 261 >gi|319762553|ref|YP_004126490.1| ompa/motb domain protein [Alicycliphilus denitrificans BC] gi|317117114|gb|ADU99602.1| OmpA/MotB domain protein [Alicycliphilus denitrificans BC] Length = 240 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ A N +LS+ RA + Sbjct: 133 FFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 189 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 190 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 234 >gi|327480088|gb|AEA83398.1| chemotaxis protein MotB-related protein [Pseudomonas stutzeri DSM 4166] Length = 254 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 36/187 (19%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILISIIDQ------RNT 234 M +++L++ + + L V+ + + R GI + + + N Sbjct: 44 MDIQQKLEERQVQFEQEIEELKKAEQVRRTILDEAVEALRRRGIKVEVSENHTVLSIPND 103 Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRN-IARD 283 + FD + +IG+V+ I I GHTD P + + + Sbjct: 104 LLGFDTGAYEIHSAYQARALEIGKVINEVISRDDRVEFLDTIFIEGHTDNRPLQGFMGKG 163 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK-----------ISGFAHHRLKIAS---DPMNS 329 NW LS RA S +Q + E+++S+ +SG+ R +A + Sbjct: 164 NWGLSTFRAISLWQFWGDALAREEQLSRLNNKDGKPLFSVSGYGETRPAVADQVTEEDFK 223 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 224 RNRRIDI 230 >gi|167618284|ref|ZP_02386915.1| ompA family protein [Burkholderia thailandensis Bt4] Length = 171 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 64 FATDQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 120 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 121 VNALAQRGVAATRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 169 >gi|299532464|ref|ZP_07045855.1| OmpA/MotB [Comamonas testosteroni S44] gi|298719549|gb|EFI60515.1| OmpA/MotB [Comamonas testosteroni S44] Length = 214 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ P L + + + I GHTD+ N +LS+ RA + Sbjct: 106 FFDFDKSVLKPAGKAKLDDLTGKIKDINLEVIIAVGHTDSV---GSDAYNQKLSVRRAEA 162 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L+ G+ + R+ G + + + NRR++I V + Sbjct: 163 VKAYLVSKGIEKSRVY-TEGKGEKQPVADNKTAAGRAQNRRVEIEVVGTKA 212 >gi|15608039|ref|NP_215414.1| outer membrane protein A OMPA [Mycobacterium tuberculosis H37Rv] gi|15840318|ref|NP_335355.1| OmpA family protein [Mycobacterium tuberculosis CDC1551] gi|31792087|ref|NP_854580.1| outer membrane protein A OMPA [Mycobacterium bovis AF2122/97] gi|121636822|ref|YP_977045.1| putative outer membrane protein A ompA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660677|ref|YP_001282200.1| outer membrane protein A [Mycobacterium tuberculosis H37Ra] gi|148822109|ref|YP_001286863.1| outer membrane protein A ompA [Mycobacterium tuberculosis F11] gi|167967701|ref|ZP_02549978.1| outer membrane protein A ompA [Mycobacterium tuberculosis H37Ra] gi|215402698|ref|ZP_03414879.1| outer membrane protein A ompA [Mycobacterium tuberculosis 02_1987] gi|215426166|ref|ZP_03424085.1| outer membrane protein A ompA [Mycobacterium tuberculosis T92] gi|215429757|ref|ZP_03427676.1| outer membrane protein A ompA [Mycobacterium tuberculosis EAS054] gi|215445042|ref|ZP_03431794.1| outer membrane protein A ompA [Mycobacterium tuberculosis T85] gi|219556764|ref|ZP_03535840.1| outer membrane protein A ompA [Mycobacterium tuberculosis T17] gi|224989293|ref|YP_002643980.1| putative outer membrane protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253800076|ref|YP_003033077.1| hypothetical protein TBMG_03089 [Mycobacterium tuberculosis KZN 1435] gi|254231205|ref|ZP_04924532.1| outer membrane protein A ompA [Mycobacterium tuberculosis C] gi|254363830|ref|ZP_04979876.1| outer membrane protein A ompA [Mycobacterium tuberculosis str. Haarlem] gi|254549877|ref|ZP_05140324.1| hypothetical protein Mtube_05346 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185796|ref|ZP_05763270.1| hypothetical protein MtubCP_07170 [Mycobacterium tuberculosis CPHL_A] gi|260199919|ref|ZP_05767410.1| hypothetical protein MtubT4_07255 [Mycobacterium tuberculosis T46] gi|260204103|ref|ZP_05771594.1| hypothetical protein MtubK8_07315 [Mycobacterium tuberculosis K85] gi|289442311|ref|ZP_06432055.1| outer membrane protein A ompA [Mycobacterium tuberculosis T46] gi|289446466|ref|ZP_06436210.1| outer membrane protein A ompA [Mycobacterium tuberculosis CPHL_A] gi|289555318|ref|ZP_06444528.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 605] gi|289568867|ref|ZP_06449094.1| outer membrane protein A ompA [Mycobacterium tuberculosis T17] gi|289573527|ref|ZP_06453754.1| outer membrane protein A ompA [Mycobacterium tuberculosis K85] gi|289744630|ref|ZP_06504008.1| outer membrane protein A ompA [Mycobacterium tuberculosis 02_1987] gi|289749421|ref|ZP_06508799.1| outer membrane protein A ompA [Mycobacterium tuberculosis T92] gi|289752954|ref|ZP_06512332.1| outer membrane protein A ompA [Mycobacterium tuberculosis EAS054] gi|289756985|ref|ZP_06516363.1| outer membrane protein A ompA [Mycobacterium tuberculosis T85] gi|294996380|ref|ZP_06802071.1| hypothetical protein Mtub2_18234 [Mycobacterium tuberculosis 210] gi|297633418|ref|ZP_06951198.1| hypothetical protein MtubK4_04816 [Mycobacterium tuberculosis KZN 4207] gi|297730403|ref|ZP_06959521.1| hypothetical protein MtubKR_04896 [Mycobacterium tuberculosis KZN R506] gi|306775025|ref|ZP_07413362.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu001] gi|306782060|ref|ZP_07420397.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu002] gi|306783573|ref|ZP_07421895.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu003] gi|306787937|ref|ZP_07426259.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu004] gi|306792274|ref|ZP_07430576.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu005] gi|306796673|ref|ZP_07434975.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu006] gi|306806741|ref|ZP_07443409.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu007] gi|306966938|ref|ZP_07479599.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu009] gi|306971133|ref|ZP_07483794.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu010] gi|307078861|ref|ZP_07488031.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu011] gi|307083420|ref|ZP_07492533.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu012] gi|313657730|ref|ZP_07814610.1| hypothetical protein MtubKV_04886 [Mycobacterium tuberculosis KZN V2475] gi|54040011|sp|P65594|Y923_MYCBO RecName: Full=Uncharacterized protein Mb0923 gi|54042590|sp|P65593|Y899_MYCTU RecName: Full=Uncharacterized protein Rv0899/MT0922 gi|1314039|emb|CAA97374.1| OUTER MEMBRANE PROTEIN A OMPA [Mycobacterium tuberculosis H37Rv] gi|13880481|gb|AAK45169.1| OmpA family protein [Mycobacterium tuberculosis CDC1551] gi|31617675|emb|CAD93784.1| PROBABLE OUTER MEMBRANE PROTEIN A OMPA [Mycobacterium bovis AF2122/97] gi|114199356|gb|ABI54278.1| outer membrane protein A [Mycobacterium bovis] gi|121492469|emb|CAL70937.1| probable outer membrane protein A ompA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600264|gb|EAY59274.1| outer membrane protein A ompA [Mycobacterium tuberculosis C] gi|134149344|gb|EBA41389.1| outer membrane protein A ompA [Mycobacterium tuberculosis str. Haarlem] gi|148504829|gb|ABQ72638.1| outer membrane protein A [Mycobacterium tuberculosis H37Ra] gi|148720636|gb|ABR05261.1| outer membrane protein A ompA [Mycobacterium tuberculosis F11] gi|224772406|dbj|BAH25212.1| putative outer membrane protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253321579|gb|ACT26182.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 1435] gi|289415230|gb|EFD12470.1| outer membrane protein A ompA [Mycobacterium tuberculosis T46] gi|289419424|gb|EFD16625.1| outer membrane protein A ompA [Mycobacterium tuberculosis CPHL_A] gi|289439950|gb|EFD22443.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 605] gi|289537958|gb|EFD42536.1| outer membrane protein A ompA [Mycobacterium tuberculosis K85] gi|289542621|gb|EFD46269.1| outer membrane protein A ompA [Mycobacterium tuberculosis T17] gi|289685158|gb|EFD52646.1| outer membrane protein A ompA [Mycobacterium tuberculosis 02_1987] gi|289690008|gb|EFD57437.1| outer membrane protein A ompA [Mycobacterium tuberculosis T92] gi|289693541|gb|EFD60970.1| outer membrane protein A ompA [Mycobacterium tuberculosis EAS054] gi|289712549|gb|EFD76561.1| outer membrane protein A ompA [Mycobacterium tuberculosis T85] gi|308216378|gb|EFO75777.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu001] gi|308325291|gb|EFP14142.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu002] gi|308331576|gb|EFP20427.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu003] gi|308335389|gb|EFP24240.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu004] gi|308339194|gb|EFP28045.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu005] gi|308342931|gb|EFP31782.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu006] gi|308346757|gb|EFP35608.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu007] gi|308355333|gb|EFP44184.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu009] gi|308359272|gb|EFP48123.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu010] gi|308363182|gb|EFP52033.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu011] gi|308366838|gb|EFP55689.1| outer membrane protein A ompA [Mycobacterium tuberculosis SUMu012] gi|326904881|gb|EGE51814.1| outer membrane protein A ompA [Mycobacterium tuberculosis W-148] gi|328459815|gb|AEB05238.1| outer membrane protein A ompA [Mycobacterium tuberculosis KZN 4207] Length = 326 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L + ++I G+TD + N LS RA Sbjct: 225 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 281 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ D I+ + G ++ + NRR++I+V Sbjct: 282 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 325 >gi|77458004|ref|YP_347509.1| OmpF [Pseudomonas fluorescens Pf0-1] gi|77382007|gb|ABA73520.1| outer membrane fibronectin-binding protein [Pseudomonas fluorescens Pf0-1] Length = 344 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL + GV R+ I G+ R ++ + NRR++ Sbjct: 295 KQVLTNQYGVESSRVQSI-GYGESRPVADNKTEAGRAVNRRVE 336 >gi|332880160|ref|ZP_08447842.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681919|gb|EGJ54834.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 242 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGH 271 V T G+ + + +F+ SSS L K + + + ++I+G+ Sbjct: 93 QVESVTDANGLQAVKVTFDSGILFNTSSSALSSNATASLAKFASTVLNVNKDMDVAIKGY 152 Query: 272 TDASPFRNIA-----RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 TD ++N + N LSL RA S L + GVS +I+ + G + Sbjct: 153 TDNQGWKNSTAAQSVQKNMDLSLQRANSVSNYLKQCGVSPTQITSVEGLGEADPVADNST 212 Query: 327 MNSA--NRRIDILV 338 NRR+++ + Sbjct: 213 AAGREQNRRVEVYL 226 >gi|326316785|ref|YP_004234457.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373621|gb|ADX45890.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 219 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + + I GHTD+ A N +LS+ RA + Sbjct: 112 FFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 169 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 213 >gi|209168561|gb|ACI42276.1| putative outer membrane protein [Vibrio alginolyticus] Length = 213 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + +F S + P ++++ + L I I+G+ + A N L Sbjct: 85 QEMQIRVLFANDSDVINPIFTQQIRELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 141 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S RA + + LM +G+S DR++ I G+ L ++ NRR+ V +G Sbjct: 142 SKRRAENVRKELMTNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 198 >gi|120611935|ref|YP_971613.1| OmpA/MotB domain-containing protein [Acidovorax citrulli AAC00-1] gi|120590399|gb|ABM33839.1| OmpA/MotB domain protein [Acidovorax citrulli AAC00-1] Length = 219 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + + I GHTD+ A N +LS+ RA + Sbjct: 112 FFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 169 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 213 >gi|228471058|ref|ZP_04055893.1| OmpA family protein [Porphyromonas uenonis 60-3] gi|228307180|gb|EEK16217.1| OmpA family protein [Porphyromonas uenonis 60-3] Length = 348 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 I N F + + E VL + +++ + + + I GHT N R Sbjct: 241 IEKDFNAAKFVQGKADLTDEAKFVLHDLAKLMEANPDLKLKIEGHTSEE---GDEAFNQR 297 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 LS +RA A L+ G+S DR+ + G S+P NRR + +V Sbjct: 298 LSEERAQVAVDFLISQGISADRL-QAEGKGSSEPIDPSNPD--VNRRTEFIV 346 >gi|302381881|ref|YP_003817704.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192509|gb|ADL00081.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 224 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S P VL + VL V+ I GHTD+ N LS RA S Sbjct: 119 FAVNQSNIEPRFDAVLSDVAGVLQEYDRSVVDIVGHTDS---SGGDAINQPLSERRALSV 175 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L+ GV +R+ ++G + ++ + NRR++IL+ Sbjct: 176 ADALIARGVIRERLF-VAGQSSRVPVASNATPEGRAQNRRVEILIRP 221 >gi|188579997|ref|YP_001923442.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] gi|179343495|gb|ACB78907.1| OmpA/MotB domain protein [Methylobacterium populi BJ001] Length = 282 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 14/202 (6%) Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 L + L + + E P ++++ + A I +L+ Sbjct: 37 LALAPARANPLTEVPGTRPPAAEGEAGTEAPPPRDEVAERVEAGAVNPSANAIIRSLAPF 96 Query: 207 VADNIVKG---VLFETTRTG--ILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLA 260 N + V G + + + T F S+ PE + L+ +G+ L Sbjct: 97 ADGNPGRPAAPVAVSPGDGGPSLRVDPARSVDLTVFFAYDSARLTPEARIQLEPLGQALQ 156 Query: 261 H---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFA 316 + I GHTDA N RLSL RA + L G+ R+ +I G+ Sbjct: 157 SRELAGHGFLIAGHTDA---AGGLGYNRRLSLARARAVRAHLAETYGIDPHRL-RIHGWG 212 Query: 317 HHRLKIASDPMNSANRRIDILV 338 R K + P NRR+++ + Sbjct: 213 PGRPKDPARPFARINRRVEVSL 234 >gi|237706550|ref|ZP_04537031.1| OmpA family membrane protein [Escherichia sp. 3_2_53FAA] gi|226899590|gb|EEH85849.1| OmpA family membrane protein [Escherichia sp. 3_2_53FAA] Length = 146 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + T V++ + + A +I + G+TDA+ + N +LSL RA + Sbjct: 35 FATGVRLKDGSTKVLVDALVNIRAKPGWLILVAGYTDAT---GDEKSNQQLSLRRAEAVR 91 Query: 297 Q-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +L S + + G + +D + NRR++I + R Sbjct: 92 NWMLQTSDIPAT-CFAVQGLGESQPAATNDTPQGRAVNRRVEISLVPR 138 >gi|154250209|ref|YP_001411034.1| motility protein B [Fervidobacterium nodosum Rt17-B1] gi|154154145|gb|ABS61377.1| motility protein B [Fervidobacterium nodosum Rt17-B1] Length = 290 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265 +++ + E G LI++ N +F+ +S+ E +++K+G V+ H++ + Sbjct: 88 ISEEYKGKITIEDKDEGTLITLT---NFKIFEPASARLTAEAKEIIEKLGAVIIEHTSNI 144 Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLM 300 I +RG+ D P +I NW LS RA + ++ Sbjct: 145 IEVRGYADDRPLTPDSIYPSNWHLSSARASTVVNFML 181 >gi|218893200|ref|YP_002442069.1| hypothetical protein PLES_44851 [Pseudomonas aeruginosa LESB58] gi|218773428|emb|CAW29240.1| hypothetical protein PLES_44851 [Pseudomonas aeruginosa LESB58] Length = 237 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRG 270 ++G E R G I +I F S+ P L + + I I G Sbjct: 97 MEGTGVEVQRQGDDIKLI-MPGNITFATDSANIAPSFYAPLNNLANSFKQYNQNTIEIVG 155 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +TD++ + N LS RA S L GV R+ G + ++ Sbjct: 156 YTDST---GSRQHNMDLSQRRAQSVAGYLTALGVDGTRL-STRGMGPDQPIASNSTADGR 211 Query: 329 SANRRIDI 336 + NRR+++ Sbjct: 212 AQNRRVEV 219 >gi|167893289|ref|ZP_02480691.1| ompA family protein [Burkholderia pseudomallei 7894] Length = 171 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 64 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 120 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ +R+S G A++ + NRR++I + Q Sbjct: 121 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 169 >gi|167844755|ref|ZP_02470263.1| ompA family protein [Burkholderia pseudomallei B7210] Length = 163 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 56 FATDQYAITPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 112 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + GV+ +R+S G A++ + NRR++I + Q Sbjct: 113 VNALAQRGVAANRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 161 >gi|149916697|ref|ZP_01905199.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149822414|gb|EDM81803.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 520 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLP-ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ +S+ ++ VL +VL E I + GHTD N +LS DRA + Sbjct: 403 FEYNSATIREGKSKEVLDAAIKVLEEYPEIRIKVVGHTDNQ---GTPEYNKKLSTDRADA 459 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 Q L + G++EDRI G ++ + NRR + + + Sbjct: 460 VKQYLAEGGIAEDRIE-TFGAGQSDPLTTNETEEGRAKNRRTEFEIIKK 507 >gi|91786415|ref|YP_547367.1| hypothetical protein Bpro_0505 [Polaromonas sp. JS666] gi|91695640|gb|ABE42469.1| OmpA/MotB [Polaromonas sp. JS666] Length = 220 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 16/160 (10%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 L + +KR + ++I L +A + G T I I + +F +S Sbjct: 50 LEAEVQKRRVEEQRRI--ALEKALAIPLATG---RVTLNNGRIGIS---GSVLFPLNSDQ 101 Query: 244 PLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNI---ARDNWRLSLDRAYSAY 296 P+ ++L+ + L E++ + G TD P + DN LS RA + Sbjct: 102 LRPDGRLLLKSLVPPLQVYLGERDELLMVSGFTDDKPIQEGNQRFADNLALSAQRALTVT 161 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP-MNSANRRID 335 + L++ G+ R + A + +D + NRR++ Sbjct: 162 RALIEEGMPSSRAFAAAFGAEQPVASNTDEKGRALNRRVE 201 >gi|70671520|gb|AAZ06132.1| outer membrane protein A [Acinetobacter sp. V-26] Length = 349 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S P+ + K+ E LA I GHTD + R + N RLSL RA Sbjct: 233 RVFFDTNKSDIKPQYKSEIAKVAEKLAEYPNATARIEGHTDNTGPRAL---NERLSLARA 289 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ +LV+ Sbjct: 290 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFAAISGSRTVLVQPG 348 Query: 342 Q 342 Q Sbjct: 349 Q 349 >gi|154490195|ref|ZP_02030456.1| hypothetical protein PARMER_00427 [Parabacteroides merdae ATCC 43184] gi|154089087|gb|EDN88131.1| hypothetical protein PARMER_00427 [Parabacteroides merdae ATCC 43184] Length = 214 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ K++ +TL + + ++ + +F +SS + Sbjct: 59 KKMDKQKKELEATLPEETTVETINN------GEALKVTF---DSGILFATNSSTVSAASK 109 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSED 307 L+ + L + + I I GHTD + N LS RA S + L GVS Sbjct: 110 SALRDLAASLNANPDTDIKIIGHTDNT---GKVDYNQTLSEKRAKSVFDYLMEDQGVSSK 166 Query: 308 RISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R++ G H + + NRR++IL+ Sbjct: 167 RMT-YEGKGVHEPVADNSTPEGRALNRRVEILILP 200 >gi|226940371|ref|YP_002795445.1| Outer membrane protein A [Laribacter hongkongensis HLHK9] gi|226715298|gb|ACO74436.1| Outer membrane protein A [Laribacter hongkongensis HLHK9] Length = 226 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 12/179 (6%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 S L + + + A+ L+ + D + Sbjct: 53 SSKKDRSKGALIGAIGGGLAGAGIGQYMDRQARDFQRQLATQIRDG-----QIFVVKRAD 107 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 ++ + FD +S+ P + + I ++ + + I GHTD++ R Sbjct: 108 NSILVTMTSQTAFDTNSASLKPGFMPTINTISRIVNQYGKTTLDITGHTDST---GNDRI 164 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 N LS +RA + L+ V R+S G + + AS+ NRR++IL+E Sbjct: 165 NVPLSQNRAAAVQNALLSRNVHPQRLSA-YGMGASQPRASNASEAGRQLNRRVEILIEP 222 >gi|212693137|ref|ZP_03301265.1| hypothetical protein BACDOR_02644 [Bacteroides dorei DSM 17855] gi|237709882|ref|ZP_04540363.1| outer membrane protein [Bacteroides sp. 9_1_42FAA] gi|237725448|ref|ZP_04555929.1| outer membrane protein [Bacteroides sp. D4] gi|254881970|ref|ZP_05254680.1| outer membrane protein [Bacteroides sp. 4_3_47FAA] gi|265753535|ref|ZP_06088890.1| outer membrane protein [Bacteroides sp. 3_1_33FAA] gi|294776453|ref|ZP_06741929.1| OmpA family protein [Bacteroides vulgatus PC510] gi|319641023|ref|ZP_07995729.1| OmpA family Outer membrane protein [Bacteroides sp. 3_1_40A] gi|212664242|gb|EEB24814.1| hypothetical protein BACDOR_02644 [Bacteroides dorei DSM 17855] gi|229436135|gb|EEO46212.1| outer membrane protein [Bacteroides dorei 5_1_36/D4] gi|229455975|gb|EEO61696.1| outer membrane protein [Bacteroides sp. 9_1_42FAA] gi|254834763|gb|EET15072.1| outer membrane protein [Bacteroides sp. 4_3_47FAA] gi|263235249|gb|EEZ20773.1| outer membrane protein [Bacteroides sp. 3_1_33FAA] gi|294449696|gb|EFG18220.1| OmpA family protein [Bacteroides vulgatus PC510] gi|317387353|gb|EFV68226.1| OmpA family Outer membrane protein [Bacteroides sp. 3_1_40A] Length = 243 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 ++ K K ++ A+ + + + +N ++ V T +GI +F+ ++ Sbjct: 75 LIGKKMDKAAEEAAQIQGAQVEQVTDNNGLQAVKV-TFDSGI-----------LFNTGNA 122 Query: 243 IPLPETIVVLQKIG-EVLAHSTE-VISIRGHTDASPFRNIARD-----NWRLSLDRAYSA 295 + L K VL + + +SI G+TD +RN + N LS +RA S Sbjct: 123 ALSAQAKSALSKFANNVLNQNRDMDVSIYGYTDNQGWRNSTAEQSIQKNLNLSQERAQSV 182 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L+ GVS +I + G +D NRR+++ Sbjct: 183 ASYLLGCGVSNSQIKSVEGLGQADPIGNNDTAEGRQQNRRVEV 225 >gi|189475078|gb|ACE00213.1| OmpA [Vibrio alginolyticus] Length = 320 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T FD +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 207 GTGSFDLNSTTLKPESAAKLDNLVAFLNEHPQANVEVVGYTDT---SGPAAYNLKVSEKR 263 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S L++ G+ RI + G + ++D NRR++++V Sbjct: 264 AESVANALVEKGIDSSRI-QARGEGENNPIASNDTREGRQQNRRVEVVV 311 >gi|50083884|ref|YP_045394.1| putative lipoprotein [Acinetobacter sp. ADP1] gi|49529860|emb|CAG67572.1| putative lipoprotein precursor [Acinetobacter sp. ADP1] Length = 159 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISI 268 +++ F T G + + +F+ S P + ++ L + + Sbjct: 33 KMLQKEGFVQTDEGWTLGL---PERLLFEFDKSEVNPAHQQEIIRLANQLNKYGLHKLKV 89 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 G+TD N N +LS RA S + + + + + I +I G ++ + + + Sbjct: 90 VGYTDN--IGNRDY-NLKLSQARAQSVAAIFINNSFTPNHI-QIIGRGSNQPLLPNTTEE 145 Query: 327 MNSANRRIDILVED 340 +ANRR+ I++ Sbjct: 146 NRAANRRVAIVIVP 159 >gi|325068016|ref|ZP_08126689.1| OmpA/MotB domain protein [Actinomyces oris K20] Length = 553 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ L + L +++ GHTD ++ A N LS RA + Sbjct: 262 FASDSADLASGAEAQLNTVASQLKQHPDGGTLTVVGHTDD--VQDDAY-NQTLSEKRANA 318 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L + + + +SG KI D +ANRR++I Sbjct: 319 VKTRLEQLTSLDKWQTSVSGKGESEPKIKDTSDEARAANRRVEI 362 >gi|253991307|ref|YP_003042663.1| hypothetical protein PAU_03834 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782757|emb|CAQ85922.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 577 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 6/105 (5%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S V++ + ++ A +I I GHTD++ N LSL RA Sbjct: 440 SLFDVGQSRLKAGSAKVLMNALIDIKAKPGWLIVISGHTDST---GNTEKNRVLSLARAE 496 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + L+++ + G R ++ +ANRR++I Sbjct: 497 AVRDWLLQTSDIPLACFAVQGEGATRPVATNSTAAGRAANRRVEI 541 >gi|219684554|ref|ZP_03539497.1| outer membrane protein [Borrelia garinii PBr] gi|219671916|gb|EED28970.1| outer membrane protein [Borrelia garinii PBr] Length = 389 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K ++ E GI +S+ D F S L + L I ++ Sbjct: 253 IETEVENYIQEKKIKDIVVEKNNKGINLSL-DIE----FYPDSFQILQKEYKKLDLIAKL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V ++D+I G+ Sbjct: 308 LEKFEKNNILIEGHTEQFGLEEEMY---ELSEKRARTIGNYLIKMKVKNKDQIL-FKGWG 363 Query: 317 HHRLKIASD-PMNSANRRIDILVED 340 + K + P+ + NRR++I + + Sbjct: 364 SKKPKYPNSSPLKAKNRRVEITILN 388 >gi|163786302|ref|ZP_02180750.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein [Flavobacteriales bacterium ALC-1] gi|159878162|gb|EDP72218.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein [Flavobacteriales bacterium ALC-1] Length = 524 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 16/153 (10%) Query: 197 KKISSTLSGLVADN----IVKGVLFETTRTGILISIID----QRNTPMFDKSSSIPLPET 248 K I +SG + + + + ++ N +FD S+ P++ Sbjct: 374 KAIKFHMSGFKEEGKERLFISNLKISEGGEDLRRKLMSEGKISTNGILFDSGSANIQPQS 433 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSE 306 + ++++I +VL ++I GHTDA N +LS RA + VL+ +S Sbjct: 434 LGIVRQISQVLMQDESIKLNIIGHTDA---DGPDDANLKLSKARAAAVKDVLINIYKISA 490 Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 DR++ G + + + + NRR++ + Sbjct: 491 DRLT-TDGKGETQPVGDNKTTDGKAQNRRVEFV 522 >gi|187923217|ref|YP_001894859.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] gi|187714411|gb|ACD15635.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 168 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 N G+ G+ + + T +FD + S + V+ + +L S + I + Sbjct: 33 NKAVGIEVAPVAGGVAVKL---PETALFDFNKSEVRSDAAAVIDRSAVLLKRSKKPIVVE 89 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 G+TD + N LS RA +A L+ G++ DRI + G A++ ++D Sbjct: 90 GYTDN--VGTLEY-NQHLSEARASAAGYALVARGIAMDRI-RTKGNAYNNPVASNDTPEG 145 Query: 328 NSANRRIDILV 338 + NRR +I+V Sbjct: 146 RALNRRTEIVV 156 >gi|118591499|ref|ZP_01548896.1| hypothetical protein SIAM614_27927 [Stappia aggregata IAM 12614] gi|118435827|gb|EAV42471.1| hypothetical protein SIAM614_27927 [Stappia aggregata IAM 12614] Length = 193 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 17/184 (9%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 ++ L N + L + LQ A + G A N + Sbjct: 17 SASGLTAQTKLSRNEIINSLQGAQQKVDLTADELQQAALENIQKYPGANAPNTLPLADKL 76 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDA 274 + + I FD S+ PE+ + I + L H+ I GHTDA Sbjct: 77 ASLRQFNVEIT-------FDFDSARIRPESFETVGLIADAL-HTPYLQGQTFFIVGHTDA 128 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + N LSL RA + + L+ + V + + + G +L+ ++P + NRR Sbjct: 129 ---KGAREYNLELSLKRAQAVREALVTTFRVPGEYLFAV-GLGEEQLRDPANPDAAVNRR 184 Query: 334 IDIL 337 + ++ Sbjct: 185 VQLI 188 >gi|86747898|ref|YP_484394.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86570926|gb|ABD05483.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 464 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 94/259 (36%), Gaps = 14/259 (5%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D + PP NK ++ +T D + + ++ + + Sbjct: 214 DIKAPPYVFQANKDPVASTLTLTGYVPDNNVHAALAAAAGRKFFSEKVVDQLKASIGAPQ 273 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KISST 202 + L + + ++ E E ++ R + +D+ + + + Sbjct: 274 GFAGAVAPALGALSRLSTGTLVVSDREVRLSGDALFEAAVSQIRSELNKDMPQGWTVKAE 333 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS A + V + + +L ++T F+ +S+ ++ +L ++ E Sbjct: 334 LSVKPAASPVDASVCQQLFDDLL-----GKSTVRFESASATIDKDSAGLLDRLIETAMRC 388 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD+ N LS RA + ++++G++ +R + G+ Sbjct: 389 PGASIEVAGHTDSDGEAGF---NQALSEKRARAVVDYMVRAGLTPERF-QAFGYGSRIPL 444 Query: 322 IASDPMN--SANRRIDILV 338 +D + NRRID ++ Sbjct: 445 AGNDSDAGKAKNRRIDFVI 463 >gi|108757075|ref|YP_633305.1| OmpA family protein [Myxococcus xanthus DK 1622] gi|17863963|gb|AAL46989.1|AF448145_1 unknown [Myxococcus xanthus] gi|108460955|gb|ABF86140.1| OmpA family protein [Myxococcus xanthus DK 1622] Length = 249 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + S + L + + + + +++ GH D R N +LS RA S Sbjct: 150 FGFNESGLSADAQQRLSDLAQCMKTAPGRVTLAGHADE---RGTEEYNLQLSNRRAASVK 206 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335 + L GV ++ + G+ R ++ ++ NRR++ Sbjct: 207 RYLTDLGVPASQLGTV-GYGETRPVNSASSEDAWSENRRVE 246 >gi|325279770|ref|YP_004252312.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311579|gb|ADY32132.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712] Length = 625 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD PE+ L+++ L + I I GHTD + + N+RLS +RA+ Sbjct: 523 FFDVDDYRLRPESYPELRQLVVFLKQNPEVKIEISGHTDNT---GSDQHNYRLSENRAFE 579 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 Y+ L + + ++R+ G+ R +D NRR +I V Sbjct: 580 VYKYLFLNHIQKERME-YKGYGKDRPLRTNDTEEGRKENRRTEIRV 624 >gi|260574902|ref|ZP_05842904.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259022907|gb|EEW26201.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 328 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +F ++ + LQ + + L + I++ GHTDA N LS R Sbjct: 219 DDLVFSSGTAALAEGSYASLQALADYLKAHPDRAIAVVGHTDA---SGPLAVNIALSRKR 275 Query: 292 AYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 A S QVL+ S GV ++ GF R ++ + NRR+++++ Q Sbjct: 276 AASVRQVLIDSLGVPATQVIAEGVGFLVPRASNLTEAGRAQNRRVEVMLTSTQ 328 >gi|91225860|ref|ZP_01260829.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01] gi|269965437|ref|ZP_06179556.1| outer membrane protein OmpA [Vibrio alginolyticus 40B] gi|91189510|gb|EAS75786.1| outer membrane protein OmpA [Vibrio alginolyticus 12G01] gi|269829916|gb|EEZ84146.1| outer membrane protein OmpA [Vibrio alginolyticus 40B] Length = 320 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T FD +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 207 GTGSFDLNSTTLKPESAAKLDNLVAFLNEHPQANVEVVGYTDT---SGPAAYNLKVSEKR 263 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A S L++ G+ RI + G + ++D NRR++++V Sbjct: 264 AESVANALVEKGIDSSRI-QARGEGENNPIASNDTREGRQQNRRVEVVV 311 >gi|255318428|ref|ZP_05359661.1| OmpA/MotB domain protein [Acinetobacter radioresistens SK82] gi|262378658|ref|ZP_06071815.1| outer membrane protein [Acinetobacter radioresistens SH164] gi|255304420|gb|EET83604.1| OmpA/MotB domain protein [Acinetobacter radioresistens SK82] gi|262299943|gb|EEY87855.1| outer membrane protein [Acinetobacter radioresistens SH164] Length = 253 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 13/146 (8%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + A V + + I++ F+ S++ +L+++ Sbjct: 118 QMLIQQPYRFNAQLSVNQAEQKIIDDALKNRIVE------FESGSAVLTAAGRQILEEMA 171 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 L + I GHTD+ N+ LS +RA + L+ + + + G Sbjct: 172 VALHKVGGKKVKIIGHTDS---SGDGNKNFLLSQERAMAVCNYLIAKNIKAENL-STEGM 227 Query: 316 AHHRLKIASDPMNSA--NRRIDILVE 339 + + NRRI+ V Sbjct: 228 GSSKPVADNTTAEGRKKNRRIEFEVL 253 >gi|315498712|ref|YP_004087516.1| ompa/motb domain protein [Asticcacaulis excentricus CB 48] gi|315416724|gb|ADU13365.1| OmpA/MotB domain protein [Asticcacaulis excentricus CB 48] Length = 187 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 13/157 (8%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +++ RL L + L+ A + F S++ ++ FD ++ Sbjct: 41 QQETRLTQLDQTTQEALTRATAAGKLAEGKFNY-------SVVLSDDSIKFDTDKAVLSE 93 Query: 247 ETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 VL + E L + + I+G TD++ N+RL RA S + L GV Sbjct: 94 AGKQVLADLAERLKRDNKNVYLEIQGFTDST---GTDDINYRLGNARADSVKRFLNSQGV 150 Query: 305 SEDRISKISGFAHHRL-KIASDPMNSANRRIDILVED 340 + +R++ IS A + ++ +ANRR+ I+V Sbjct: 151 ALNRMASISYGAEQPIAPNSTAQGRAANRRVVIVVLS 187 >gi|269968783|ref|ZP_06182772.1| outer membrane protein, putative [Vibrio alginolyticus 40B] gi|269826595|gb|EEZ80940.1| outer membrane protein, putative [Vibrio alginolyticus 40B] Length = 213 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + +F S + P ++++ + L I I+G+ + A N L Sbjct: 85 QEMQIRVLFANDSDVINPIFTQQIRELSDFLKEYPNTSIEIQGYASRT---GTAEHNLDL 141 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S RA + + LM +G+S DR++ I G+ L ++ NRR+ V +G Sbjct: 142 SKRRAENVRKELMTNGISGDRVT-IVGYGDTVLATQGTDQVSHALNRRVTATVIGHKG 198 >gi|260774919|ref|ZP_05883820.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260609174|gb|EEX35332.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 188 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 ++ F +S+ PE+ +L ++ + + + G+TD+ A N +LS R Sbjct: 76 DSSSFALNSAELKPESKAMLAELVAFMTEFPQSTVEVVGYTDS---SGAASYNQKLSERR 132 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A S L + G+ RIS G + +++ NRR++I+V Sbjct: 133 AQSVADALEEQGIDASRISA-RGEGENNPIASNETQQGREQNRRVEIMV 180 >gi|242278716|ref|YP_002990845.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242121610|gb|ACS79306.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 400 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 17/173 (9%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 PP + I ++ Q +AK + + + + ++ I +++ Sbjct: 237 QMQSPPQNGNTIPQSTPTQQEQPVAKHATPKAAPAPVQSTTQAPKAQSKPRSINLAVQ-- 294 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLS 288 FD SS PE+ +L ++G+ L + I I GHTD+ + N++LS Sbjct: 295 -----FDVDSSQIKPESYSLLNELGKALISDRLKDKRIVIGGHTDSD--ASPEY-NFKLS 346 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 +RA S + L + ++ RI +GF + + + NRR+ + + Sbjct: 347 KERAESVKKYLTDNFPIAPQRIG-TTGFGESNPLVPNTTKYNKLLNRRVQVSI 398 >gi|319900153|ref|YP_004159881.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108] gi|319415184|gb|ADV42295.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108] Length = 419 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ PE++ + +I +++ + S+ GHTD++ A N LS R+ S Sbjct: 318 FDVGKSVIKPESMGEINRIVQLMTENPTLKFSVEGHTDST---GNATSNQTLSEARSKSI 374 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L++ G++ DR++ SG A+D + NRR++ + Sbjct: 375 VDKLVEMGIAADRLTS-SGKGQTTPIADNATDEGRAKNRRVEFV 417 >gi|242310593|ref|ZP_04809748.1| OmpA/MotB [Helicobacter pullorum MIT 98-5489] gi|239522991|gb|EEQ62857.1| OmpA/MotB [Helicobacter pullorum MIT 98-5489] Length = 251 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 6/161 (3%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 ++ + + KKI S + + V G I+ +FDK+ Sbjct: 51 QQQADITTDPETTNEVKKIESEIMDFKENTRVSLGPSTIIDEGSRGFILRFNGKLLFDKN 110 Query: 241 SSIPL-PETIVVLQKIGEVLAHSTEV--ISIRGHTDASPF--RNIARDNWRLSLDRAYSA 295 + E + L+++ +L + + G+TD S +DN LS RA Sbjct: 111 ETTLKNAEEKLFLKRMALILQKMPANMHLDVIGYTDDSQIIPTQKYQDNLGLSAMRALGV 170 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335 +VL+++GV+ +I+ + G + L ++ + NRR++ Sbjct: 171 ARVLIENGVNPQKITSLGNGATNFVLPNTTEENKAQNRRVE 211 >gi|224534380|ref|ZP_03674958.1| outer membrane protein [Borrelia spielmanii A14S] gi|224514482|gb|EEF84798.1| outer membrane protein [Borrelia spielmanii A14S] Length = 381 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S+ D F +S L + L I ++ Sbjct: 245 IETEVENYIQEKKIKAISVEKNNKGINLSL-DIE----FYPNSFQILQKEYKKLDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V ++D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMY---ELSEKRARAIGNYLIKMKVKNKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380 >gi|157889026|dbj|BAF80970.1| fibronectin-binding protein [Campylobacter lari] Length = 328 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE +Q++G+VL + + +I GHTD N +LSL+RA Sbjct: 224 FGFDQTDINPEFAQKIQEVGKVLEENPQYYTILEGHTDNI---GPKAYNQKLSLERAKVV 280 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L K+GV++++I G+ + K ++D + NRR++ Sbjct: 281 AKELEKTGVTKEKI-ATKGYGFDKPKASNDTKEGRAQNRRVE 321 >gi|154147928|ref|YP_001407122.1| outer membrane fibronectin-binding protein [Campylobacter hominis ATCC BAA-381] gi|153803937|gb|ABS50944.1| outer membrane fibronectin-binding protein [Campylobacter hominis ATCC BAA-381] Length = 333 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P+ L+K+ ++ H+ + + G+TD+ N +LS RA + Sbjct: 231 FAFDSAEISPKYYSELEKVSSIMKEHAEYSVRLEGNTDSI---GKEAYNQKLSERRANAV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L+K GV ++I+ + G +D + NRR+D Sbjct: 288 SKALVKLGVPAEKITTV-GLGEKNPVATNDTAEGRAQNRRVD 328 >gi|77464589|ref|YP_354093.1| OmpA family outer membrane protein [Rhodobacter sphaeroides 2.4.1] gi|77389007|gb|ABA80192.1| possible outer membrane protein, OmpA family [Rhodobacter sphaeroides 2.4.1] Length = 652 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281 I + F+ S+ L + EV + I GHTD+ Sbjct: 487 RIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 N LS RA + L V R+ + G+ R + + ANRRI+ + Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGKEEGREANRRIEFTLL 600 Query: 340 DRQG 343 G Sbjct: 601 GEDG 604 >gi|86138174|ref|ZP_01056749.1| OmpA/MotB domain protein [Roseobacter sp. MED193] gi|85825201|gb|EAQ45401.1| OmpA/MotB domain protein [Roseobacter sp. MED193] Length = 194 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P+ L + + + I GHTD+ AR N RLSL RA Sbjct: 93 FDFDSATLRPDQQPKLVNMCASMQALQGTVFQIIGHTDS---SGSARYNERLSLLRAQEV 149 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L+ + G+ ED + K G +++P NRR++ Sbjct: 150 RRHLISNCGIDED-MLKAIGMGEAAPYNSANPRADENRRVE 189 >gi|192290369|ref|YP_001990974.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|192284118|gb|ACF00499.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 441 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283 +S + F++ S++ + +L K+ + I + G+TD Sbjct: 328 RVSALASAEKINFERRSAVIDKASQPLLDKLAAAIKQCPAVTIEVAGYTDG---AGKKSA 384 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N LS RA + L K G+ ++ G+ + A+D + NRRI+ +V+ Sbjct: 385 NVALSKRRAEAVVASLTKVGIGSVKLVA-EGYGSAKPIAANDTAEGRAQNRRIEFVVK 441 >gi|171060730|ref|YP_001793079.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170778175|gb|ACB36314.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 200 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ P + L + L + ++ GH D R A N +LS RA Sbjct: 96 FETNSARLTPSSRQQLDTVAAALKSNQLQAYGFNLEGHADP---RGQASTNRQLSQMRAE 152 Query: 294 SAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 S L+ G+ DR++ I G D NRR+ I+ Sbjct: 153 SVRDYLVATHGIPVDRLAPI-GKGDTEPLNTRDVAAPENRRVTIV 196 >gi|104780902|ref|YP_607400.1| outer membrane protein OprF [Pseudomonas entomophila L48] gi|95109889|emb|CAK14594.1| outer membrane protein OprF [Pseudomonas entomophila L48] Length = 346 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 240 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRAKAV 296 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 VL + GV R+S + G+ R A++ + NRR++ Sbjct: 297 KDVLTQQYGVESGRVSSV-GYGETRPVADNATEAGRAVNRRVE 338 >gi|256846182|ref|ZP_05551640.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|294784699|ref|ZP_06749987.1| OmpA family protein [Fusobacterium sp. 3_1_27] gi|256719741|gb|EEU33296.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|294486413|gb|EFG33775.1| OmpA family protein [Fusobacterium sp. 3_1_27] Length = 195 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E + I + D+ FD S P+ +L + E + + ++I GHTD + Sbjct: 52 EEPPEEMTIVLDDRALN--FDFDKSFVKPQYDEMLTNLKEFIMKNDYELTIEGHTD---Y 106 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 + N LS RA + L++ G+ RI I + + NRR++ Sbjct: 107 IASNQYNMGLSKRRAEAVKVKLIELGLDPSRIVAIVPKGEEEPVADNKTTEGRAKNRRVE 166 Query: 336 ILVEDR 341 + R Sbjct: 167 FKLVKR 172 >gi|256823578|ref|YP_003147541.1| OmpA/MotB domain-containing protein [Kangiella koreensis DSM 16069] gi|256797117|gb|ACV27773.1| OmpA/MotB domain protein [Kangiella koreensis DSM 16069] Length = 377 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE + + K+ E L I+GHTD+ + A N LS RA S Sbjct: 270 FDTNKYEVKPEMVAEIAKVAEFLRQYPSVNAEIQGHTDS--VGSSAY-NQGLSERRANSV 326 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 L+ + G++ R+S G+ +++ + NRR + Sbjct: 327 KDYLVSNFGINASRLSA-KGYGEEEPIADNSTEEGRALNRRAE 368 >gi|85705152|ref|ZP_01036252.1| OmpA family protein [Roseovarius sp. 217] gi|85670474|gb|EAQ25335.1| OmpA family protein [Roseovarius sp. 217] Length = 219 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ L++ + + GHTDA N L + RA + Sbjct: 74 FAFNSAELDTGARDTLREQARWIRQFPEVRFRVYGHTDAV---GSDSYNKTLGMRRAQAV 130 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ ++ F + I +D NRR Sbjct: 131 VAFLSSQGISRARLEAVASFGETQPLIVTDGRERRNRR 168 >gi|171315886|ref|ZP_02905116.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171098982|gb|EDT43770.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 220 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ L K+ L + + + G+TDA+ N LS RA Sbjct: 118 FATDSAVLTSAANAALDKL---LNQQGDRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ D + +G ++D + NRR++I ++ Sbjct: 172 DAVAAYLREHGLKADSFAA-TGHGEANPAASNDTVEGRARNRRVEISLQ 219 >gi|260590691|ref|ZP_05856149.1| lipoprotein PG3 [Prevotella veroralis F0319] gi|260537352|gb|EEX19969.1| lipoprotein PG3 [Prevotella veroralis F0319] Length = 256 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 6/145 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A + + + T G+ + + +F + S L K+ + Sbjct: 105 MDKVAREAAQQLPNASVDKVTDANGLECVKVTFDSGILFPLNGSDLNAAAKNDLTKLAGL 164 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + ++ ++I+G+TDA + N LS RA S L GV+ +I + GF Sbjct: 165 MKRNSNCDVAIQGYTDA---SGNDKINIPLSQRRASSVSSYLQNQGVTSRQIRSVEGFGS 221 Query: 318 HRLKIASDPMNSANRRIDILVEDRQ 342 I + ++ NRR+++ + Q Sbjct: 222 QNP-IENKTVSQKNRRVEVYLYASQ 245 >gi|171914446|ref|ZP_02929916.1| OmpA/MotB [Verrucomicrobium spinosum DSM 4136] Length = 323 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + + PE+ L ++ +++ + + GHTD N LS RA + Sbjct: 220 FFDTNRTEVKPESKPALDEVAKLMTEDPALKVLVVGHTDTV---GGFEPNRSLSERRAAA 276 Query: 295 AYQVL-MKSGVSEDRISK--ISGFAHHRLKIASDPMNSANRRIDIL 337 L K G+S +R+ +S +A +++ + NRR++++ Sbjct: 277 VVAELKAKYGISAERLFSFGVS-YAAPAATNSTEEGRAQNRRVELV 321 >gi|117922218|ref|YP_871410.1| chemotaxis protein MotB-like protein [Shewanella sp. ANA-3] gi|117614550|gb|ABK50004.1| chemotaxis protein MotB-related protein [Shewanella sp. ANA-3] Length = 243 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 37/191 (19%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRT----GILISIIDQ------ 231 + A+ L +++I +++ L A+ + +L + I + I++ Sbjct: 35 LAAVALIIELTQKSEQIDASIEELKKAEEARRNILIDIKEELAKQNIHVEIVENDTVLRI 94 Query: 232 -RNTPMFDKSSSIPLPET--IVVLQKIGEVL--AHSTEV-------ISIRGHTDASPFRN 279 +T F+ T ++ IG L A +T + + GHTD++ Sbjct: 95 PESTLSFESGKDTLPENTTVKNEVRLIGIALHKAITTNERWKYLDTVFVEGHTDSNGIWY 154 Query: 280 IARDNWRLSLDRA-----------YSAYQVLMKSGVSEDRISKISGFAHHR---LKIASD 325 + NW LS DRA A ++ + + + + +SG+A R L+ ++ Sbjct: 155 RGKGNWGLSTDRAVSIWKLWQTEINVAPKLSVLTNYNGQLLFSVSGYADTRRVDLQETTE 214 Query: 326 PMNSANRRIDI 336 + NRRIDI Sbjct: 215 EQRARNRRIDI 225 >gi|332559482|ref|ZP_08413804.1| OmpA family outer membrane protein [Rhodobacter sphaeroides WS8N] gi|332277194|gb|EGJ22509.1| OmpA family outer membrane protein [Rhodobacter sphaeroides WS8N] Length = 652 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281 I + F+ S+ L + EV + I GHTD+ Sbjct: 487 RIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 N LS RA + L V R+ + G+ R + + ANRRI+ + Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGKEEGREANRRIEFTLL 600 Query: 340 DRQG 343 G Sbjct: 601 GEDG 604 >gi|237752179|ref|ZP_04582659.1| cadF [Helicobacter winghamensis ATCC BAA-430] gi|229376421|gb|EEO26512.1| cadF [Helicobacter winghamensis ATCC BAA-430] Length = 307 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS+ PE ++ + + + I GHTD++ N +LS RA + Sbjct: 201 FPFDSSVVAPEYNAEIKDFAQSMKENPSQTAIISGHTDST---GNDEYNQKLSERRANAV 257 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 +++ GV +R+ + G+ + + NRR++ Sbjct: 258 KDAIIEEGVQAERL-QAKGYGESKPIADNATKEGRQENRRVE 298 >gi|190894192|ref|YP_001984486.1| hypothetical protein RHECIAT_PB0000226 [Rhizobium etli CIAT 652] gi|190699853|gb|ACE93936.1| hypothetical protein RHECIAT_PB0000226 [Rhizobium etli CIAT 652] Length = 429 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 LPP + + ++ + ++ + L + + + V I++ I R Sbjct: 264 ATLPPNGVVRSARIALPPKVVMSSDRLRNFLEPEIREGL---VTVSEDPQQIVVII---R 317 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 + MFD +S + +L +IG L + + + GHTDA P +++A + Sbjct: 318 ASGMFDSASPEVKKMFLPLLLRIGRSLNGESGSVLLTGHTDAIPVQSLAFPSNDSLSLAR 377 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 SA ++KS + + + G ++ + NRRI I++ Q Sbjct: 378 ASAAAEIIKSMMDDPGRVREEGRGSGEPVASNHTPEGRARNRRIQIIITKTQ 429 >gi|332519230|ref|ZP_08395697.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045078|gb|EGI81271.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 235 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 17/155 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 ++ A+KI + G E GI+++ D+ + FD + + Sbjct: 82 KMDKQAQKIEEEIPGA---------EVERVDDGIVVT-FDENSGVYFDTAKYNINAASQA 131 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L K+ V + I + GHTD+ N LS +RAY+ L G+S R+ Sbjct: 132 TLSKLIGVFREYPDTNILVVGHTDSV---GSEDSNMTLSKNRAYAVTNYLTNQGISNARV 188 Query: 310 SKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + F + + + NRR++I + Q Sbjct: 189 T-TNWFGEGQPTNDNSTKEGRAKNRRVNIAIVPNQ 222 >gi|254516643|ref|ZP_05128702.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3] gi|219675066|gb|EED31433.1| OmpA/MotB domain protein [gamma proteobacterium NOR5-3] Length = 255 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285 ++ + F S+ ++ L V+ HS+ + + G+TD+ N Sbjct: 144 EVVLTIDRLGFAFDSAALDAKSRSALDAAVAVIKSHSSVKMDVVGYTDS---SGPEEYNQ 200 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 +LS RA +A L+ GV+ ++ + +G ++D NRR++++V Sbjct: 201 KLSERRAQAAVDYLVSQGVAAGQL-RATGRGEANPVASNDSRDGRERNRRVELVV 254 >gi|294651528|ref|ZP_06728837.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194] gi|292822551|gb|EFF81445.1| OmpA family protein [Acinetobacter haemolyticus ATCC 19194] Length = 160 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++K F T G + + +FD + S PE + ++ + L + I Sbjct: 34 KMLKQEGFVLTDEGWSLGL---PERLLFDFNKSDIKPEHANEIARLAKQLNKYDLQKLKI 90 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD N N +LS +RA S + + G ++ ++ + G + + + + Sbjct: 91 VGHTDD--VGNPEY-NQKLSEERAQSVSMIFVNEGFKQNNLT-VIGRGSSQPYLPNTSEE 146 Query: 327 MNSANRRIDILVED 340 ++NRR+ +++ Sbjct: 147 NRASNRRVAVIIIP 160 >gi|149278789|ref|ZP_01884924.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Pedobacter sp. BAL39] gi|149230408|gb|EDM35792.1| OmpA/MotB:Rickettsia 17 kDa surface antigen [Pedobacter sp. BAL39] Length = 175 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 14/163 (8%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGV---LFETTRTGILISIIDQRNTPMFDKS 240 +A K +K + + + DN+ K + T GI + + +F + Sbjct: 17 VACKTQKIAKSTTPPATEVAADQELDNLKKNLPDNQIARTNEGIKFTFSSE---VLFPTN 73 Query: 241 SSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 SSI + L ++ +V++ + I GH+D + + W LS RA S Sbjct: 74 SSILNEASKKKLAEVAKVISEQKPAPAVLIEGHSDKT--GTAPYNQW-LSEKRAVSVKTY 130 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L+ G++ +I + +G + + NRR++I + Sbjct: 131 LVSLGIAASKI-RTAGQGDTKPVGDNKTKEGRLQNRRVEITLL 172 >gi|126463429|ref|YP_001044543.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105093|gb|ABN77771.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 652 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281 I + F+ S+ L + EV + I GHTD+ Sbjct: 487 RIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 N LS RA + L V R+ + G+ R + + ANRRI+ + Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGKEEGREANRRIEFTLL 600 Query: 340 DRQG 343 G Sbjct: 601 GEDG 604 >gi|262402450|ref|ZP_06079011.1| outer membrane protein [Vibrio sp. RC586] gi|262351232|gb|EEZ00365.1| outer membrane protein [Vibrio sp. RC586] Length = 223 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I GHTD++ Sbjct: 99 VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDST 158 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N LS RA S L+ GV+ R G ++ + NRR Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 214 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 215 VEIQILPLK 223 >gi|308273873|emb|CBX30473.1| hypothetical protein N47_K27130 [uncultured Desulfobacterium sp.] gi|308275118|emb|CBX31717.1| hypothetical protein N47_E52290 [uncultured Desulfobacterium sp.] Length = 355 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 16/185 (8%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 KD K + K + + PP + E+ R + L N KG Sbjct: 180 KDKPKVEETPKVVEPPKAAEEPPKAVEEPPKAVEPPRTDSDGDGVYDDLDKCP--NTPKG 237 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + G I FD + L + +L + V+ + + + ++GHTD Sbjct: 238 ATVDC--RGCWIL-----QGVYFDTAKWNILSKYFPILDNVVSVIKKNPDMKLEVQGHTD 290 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSAN 331 + R A+ N +LS +RA S + + GV I GF +D + N Sbjct: 291 S---RGTAKYNRKLSENRAKSVVEYFVSKGVDRS-ILTAKGFGFTVPAAPNDNAEDMAKN 346 Query: 332 RRIDI 336 RR+++ Sbjct: 347 RRVEL 351 >gi|148261844|ref|YP_001235971.1| OmpA/MotB domain-containing protein [Acidiphilium cryptum JF-5] gi|146403525|gb|ABQ32052.1| OmpA/MotB domain protein [Acidiphilium cryptum JF-5] Length = 203 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S+ P+ + L ++G L + + GHTD + A N LS RA Sbjct: 97 FATGSAKLTPQAVTELDRLGRALTDKTLAAYHFRVVGHTDTT---GAASTNLALSQARAA 153 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 + LM + R+ + +G L + + P N ANRR+ I+ Sbjct: 154 AVKTYLMSKFDIPATRL-QATGVGEADLLVPTGPNVANRANRRVQII 199 >gi|256420785|ref|YP_003121438.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256035693|gb|ACU59237.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 586 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 13/107 (12%) Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P + L K+ +L + I I HTD + A N +LS RA + L+ Sbjct: 484 LTPASHPALDKLVALLKDHPQMEIEISAHTDNT---GSAAYNQQLSEKRALNCVAYLVDK 540 Query: 303 GVSEDRISKISGFAHHRLKIAS-------DPMNSA-NRRIDILVEDR 341 G+ + R+ + G+ + + +P NRRI++ + + Sbjct: 541 GIDKKRL-QYKGYGATKPVAPNTNPDGTDNPEGRRLNRRIELRILKQ 586 >gi|66045337|ref|YP_235178.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae pv. syringae B728a] gi|63256044|gb|AAY37140.1| Thrombospondin type 3 repeat:OmpA/MotB:OmpF [Pseudomonas syringae pv. syringae B728a] gi|330973748|gb|EGH73814.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 344 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPSSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ + A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGETKPVADNATEAGRAVNRRVE 336 >gi|119357876|ref|YP_912520.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355225|gb|ABL66096.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266] Length = 337 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P + L +I +++ + + GHTD N LS RA + Sbjct: 235 FDTNKSDIKPASSPALVEIAKLMKSQPALKLHVVGHTDNV---GGYEFNMGLSKRRADAV 291 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L+++ G++ R++ +G A+ + + + NRR++++ Sbjct: 292 VASLVRNHGIAPARLAA-NGVAYLAPVAPNTTEAGRAKNRRVELV 335 >gi|84499777|ref|ZP_00998065.1| OmpA domain protein [Oceanicola batsensis HTCC2597] gi|84392921|gb|EAQ05132.1| OmpA domain protein [Oceanicola batsensis HTCC2597] Length = 641 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ ++ +L I EVL + I GHTD+ N +LS DRA + Sbjct: 499 FEPGSATVTGDSRAILDDIAEVLKFCGPVDLEIGGHTDSQ---GREIMNEQLSQDRADTV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L + V +G+ + +D NRRI+ + Sbjct: 556 LAELRQRRVKTAGFVA-TGYGETQPIADNDTEEGREENRRIEFSL 599 >gi|254249905|ref|ZP_04943225.1| Outer membrane protein [Burkholderia cenocepacia PC184] gi|124876406|gb|EAY66396.1| Outer membrane protein [Burkholderia cenocepacia PC184] Length = 221 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I ++ +F + P L ++ A T +++ G TD+ Sbjct: 107 VIERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSV---GSDDY 163 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339 N LS RA + L G+ D ++ G A A+ ++NRR++I ++ Sbjct: 164 NLALSKRRAEAVAAYLKAHGLKTDSMTVSGRGKADPVASNATPEGRASNRRVEIRLQ 220 >gi|325526573|gb|EGD04123.1| OmpA/MotB domain-containing protein [Burkholderia sp. TJI49] Length = 112 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 R +FD + P + L ++ + + + G+TD+ + + +N LSL Sbjct: 4 RGDALFDFDKANLKPAGVRALDEVIDNARGKRFRLVEVAGYTDS--IGSDSYNN-ALSLR 60 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 RA S L G+ +R+ + GF A+D + NRR++I++E Sbjct: 61 RAKSVADYLRAHGLDAERM-AVDGFGKSNPVASDATDAGRAQNRRVEIVLE 110 >gi|307719340|ref|YP_003874872.1| OmpA family protein [Spirochaeta thermophila DSM 6192] gi|306533065|gb|ADN02599.1| OmpA family protein [Spirochaeta thermophila DSM 6192] Length = 826 Score = 72.6 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 15/147 (10%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV----VLQKIGEVLAHST-EV 265 +V V G IS+ D P + PE L ++ +L Sbjct: 680 VVTDVYVVIKDGGAYISVPDIHFAPFTADYTDKVPPEIREENLRTLDEVAAMLKKFPQYT 739 Query: 266 ISIRGHTDASPFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + GH + + + R LS RA + + L+ GV R+ I G+ Sbjct: 740 VQLEGHAVSLLWFDPERAKIEHQEVLIPLSRARAEAVRKALISRGVDPSRL-SIVGYGGS 798 Query: 319 RLKIASDPMNSA--NRRIDILVEDRQG 343 R + + NRR++ L++++ G Sbjct: 799 RPIVPFSDLKKRWVNRRVEFLLKEKSG 825 >gi|313674495|ref|YP_004052491.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312941193|gb|ADR20383.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 672 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 11/135 (8%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 I + + G IS+ N F + S L + L ++ +L S I Sbjct: 545 QEITRDIYLSPLSEGSFISL----NNVYFAQGSYEILEASHPELDRLIRLLRSSETMQIE 600 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASD 325 I GHT+ R R N LS DRA + ++++G+ + RI K G+ + ++ Sbjct: 601 IGGHTER---RGSPRLNRILSQDRADAVKAYIVQAGIDQKRI-KTKGYGSSKPVTDGRTE 656 Query: 326 PMNSANRRIDILVED 340 NRR++ + Sbjct: 657 IERRQNRRVEYTILS 671 >gi|148979919|ref|ZP_01815777.1| outer membrane protein [Vibrionales bacterium SWAT-3] gi|145961523|gb|EDK26825.1| outer membrane protein [Vibrionales bacterium SWAT-3] Length = 221 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N FD S L+ + +L + + I GHTD++ Sbjct: 97 VQVERVGENQLLLRLENGIGFDSGSYALESSIHNTLRGVARILVEYPDTSLVIEGHTDST 156 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N LS RA S L+ V+ R G ++ NRR Sbjct: 157 ---GSESTNQILSERRAESVRAFLISQDVAAGRAIA-RGNGERYPLCDNNTSRGRACNRR 212 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 213 VEIQILPLK 221 >gi|289673277|ref|ZP_06494167.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae pv. syringae FF5] gi|330977632|gb|EGH77539.1| thrombospondin type 3 repeat-containing OmpA/MotB protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 344 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ + A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESKPVADNATEAGRAVNRRVE 336 >gi|4580975|gb|AAD24562.1|AF117970_1 OprF [Pseudomonas viridiflava] Length = 344 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPSSYGDIKNLADFMQQYPQTSTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ R A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESRPVADNATESGRAVNRRVE 336 >gi|148266343|ref|YP_001233049.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146399843|gb|ABQ28476.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 454 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + K+G+ + +I GHTD + N +LS +RA + Sbjct: 347 FDTGKADIKPQYREEIAKVGDYMKKYPTTTAAIEGHTDNV---GGSEYNMKLSQERAENV 403 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L+++ G+ R+S G+ R ++ NRRI+ +++ Sbjct: 404 VNYLVENFGIERSRLSA-KGYGFTRRIAYNNTAEGRQKNRRINAVID 449 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE + K+G+ + + I GHTD A N LS RA S Sbjct: 223 FDIDKADIRPEYHDEVAKVGDFMKKYPTTTTVIEGHTDNV---GTAEYNMGLSQRRAESV 279 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L++ G+ R+S G+ R +++ NRRI+ +++ Sbjct: 280 VNYLVEKFGIENSRLSA-KGYGLTRPVADNSTNEGKQLNRRIEAIID 325 >gi|330502392|ref|YP_004379261.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328916678|gb|AEB57509.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 210 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 13/118 (11%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 + + + D + FD + E+ ++ + + + + + GHTD+ Sbjct: 95 EAVRVEL-DVK----FDFDKAQVKQESYGDIKALADFMKQYPQTSTVVEGHTDSV---GS 146 Query: 281 ARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA + VL+ + GV R+ + G+ R + + NRR++ Sbjct: 147 DAYNQGLSERRASAVRDVLVNQYGVESGRVQAV-GYGESRPVADNATADGRAINRRVE 203 >gi|227538150|ref|ZP_03968199.1| possible outer membrane protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241993|gb|EEI92008.1| possible outer membrane protein [Sphingobacterium spiritivorum ATCC 33300] Length = 628 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 N F + LP + L + L + I I GHTD + + N LS +R Sbjct: 522 NNIFFALNKYDLLPSSKSDLNTLVLFLQENPLIRIEIGGHTDNT---GNDQLNKTLSDNR 578 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A + L+ G+S +R+ G+ ++ +D + NRR + + Sbjct: 579 AKAVVTYLIARGISANRLLA-KGYGSNQPLATNDTETGKALNRRTEFKI 626 >gi|197105040|ref|YP_002130417.1| outer membrane protein [Phenylobacterium zucineum HLK1] gi|196478460|gb|ACG77988.1| outer membrane protein [Phenylobacterium zucineum HLK1] Length = 190 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDN 284 ++ ++ F PE L ++ E L + I+GHTD++ N Sbjct: 77 QVVLSDDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEIQGHTDST---GPEAYN 133 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 +L RA + + L K+GV+ +R+ IS + ++D + NRR++I+V Sbjct: 134 DQLGEARAEAVRKHLAKAGVALNRMGTIS-YGEEAPVASNDTAEGRAQNRRVEIIVLS 190 >gi|328470357|gb|EGF41268.1| hypothetical protein VP10329_06152 [Vibrio parahaemolyticus 10329] Length = 225 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 11/180 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 K+ + + S + R ++ A+K S+ ++ L + ET Sbjct: 49 APKTNTELRHPEWGYASASHVSTAPRVNQMARAAEKKSNNVTSLEMFLDRHNIPHETIGG 108 Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280 G ++I + +Q + F S+ + L+K+G LA + + I GH D++ + Sbjct: 109 GHLMIRLKEQVH---FQTGSAQLSSNSQDWLRKLGHYLAGRTDVDVVIDGHADSTGAASF 165 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 LS RA + ++ S + R+ GF + + A+ + NRR+++++ Sbjct: 166 NDT---LSEKRAREVEKQMLASSIPRQRVFS-RGFGEYVPQCSNATSSGKACNRRVELML 221 >gi|226953967|ref|ZP_03824431.1| OmpA family outer membrane protein [Acinetobacter sp. ATCC 27244] gi|226835321|gb|EEH67704.1| OmpA family outer membrane protein [Acinetobacter sp. ATCC 27244] Length = 159 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 10/134 (7%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 ++K F T G + + +FD + S PE + ++ + L + I Sbjct: 33 KMLKQEGFVLTDEGWSLGL---PERLLFDFNKSDIKPEHATEIARLAKQLNKYDLQKLKI 89 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DP 326 GHTD N N +LS +RA S + + G ++ ++ + G + + + + Sbjct: 90 VGHTDD--VGNPEY-NQKLSEERAQSVSMIFVNEGFKQNNLT-VIGRGSSQPYLPNTSEE 145 Query: 327 MNSANRRIDILVED 340 ++NRR+ +++ Sbjct: 146 NRASNRRVAVIIIP 159 >gi|163801667|ref|ZP_02195565.1| Conserved hypothetical outer membrane protein [Vibrio sp. AND4] gi|159174584|gb|EDP59386.1| Conserved hypothetical outer membrane protein [Vibrio sp. AND4] Length = 216 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 13/126 (10%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G++ + F S P L+++ L I++ GHTD + Sbjct: 97 TGEGLVARLH-------FGFDHSSLTPMGKKALKQLASSLNKRDSAITVDGHTDN---KG 146 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 N L L RA +A L +GV + I + F ++ + NRR++I Sbjct: 147 SDGYNQDLGLRRALAASNGLTNAGVDNNNIV-VRSFGESEPMASNATPEGRAQNRRVEIW 205 Query: 338 VEDRQG 343 V D+ Sbjct: 206 VADKDA 211 >gi|329943863|ref|ZP_08292134.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328531569|gb|EGF58405.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 384 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ P LQ + + L +SI GHTD ++ A N LS RA + Sbjct: 220 FASDSADLTPAADTQLQTVADQLNQYPDGGTLSIVGHTDD--IQDDAY-NQPLSEKRANA 276 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 L + + +G ++ +D +ANRR++I + G Sbjct: 277 VKDRLQQLTTLDKWSPTTTGKGESEPRVKETTDEARAANRRVEITLTPTGG 327 >gi|239995142|ref|ZP_04715666.1| TolC family type I secretion outer membrane protein [Alteromonas macleodii ATCC 27126] Length = 648 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ LPE LQ + E L + + I GH A N RLS RA + Sbjct: 540 FASNSTEVLPEYENSLQDVIEALNNDPNSGVIIHGHAS---LDGDAAYNQRLSERRAKAV 596 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 +LM K+ + RI+ + G+ R + SD N+ NRRI+ Sbjct: 597 ASLLMNKANIEARRITAV-GYGESRPLVDEESDAANARNRRIE 638 >gi|296447839|ref|ZP_06889751.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] gi|296254639|gb|EFH01754.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] Length = 202 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F ++S+ + + V +++G+ L + I GHTDA R N LS RA Sbjct: 94 FARNSATLRGKDLEVARQLGKALGDEKLAGGKFLIMGHTDA---RGSDEANQALSERRAE 150 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + +L GV+ DR+ + G+ L+ P + NRR+ ++ Sbjct: 151 AVKHLLTTEFGVAPDRLITV-GYGETHLENPKRPFAAENRRVQVV 194 >gi|2062640|gb|AAC35418.1| CadF precursor [Campylobacter coli] Length = 326 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +++I ++L + +I GHTD + A N +LS RA S Sbjct: 223 FGFDKVDINPAFEEKIKEIAQLLDENARYDTILEGHTDN--IGSRAY-NQKLSERRAESV 279 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L K GV +DRI + G+ + + ++ + NRR+D Sbjct: 280 AKELEKFGVDKDRIQTV-GYGQDKPRSRNETKEGRADNRRVD 320 >gi|212633550|ref|YP_002310075.1| OmpA protein [Shewanella piezotolerans WP3] gi|212555034|gb|ACJ27488.1| OmpA [Shewanella piezotolerans WP3] Length = 222 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDAS 275 TR+G I I++ N F + VL + V L + +++ GHTD+ Sbjct: 99 VSVTRSGDTI-ILNMPNDVTFGVDQTDLSQRAKQVLNSVALVALEYDETKLNVMGHTDS- 156 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 A N RLS RA LM V R+ G R +++ + NRR Sbjct: 157 --SGAASYNMRLSQVRASEVASYLMSRKVPSARVVS-HGVGEDRPVASNETKAGRAENRR 213 Query: 334 IDILV 338 ++I++ Sbjct: 214 VEIIL 218 >gi|238757126|ref|ZP_04618313.1| OmpA domain protein [Yersinia aldovae ATCC 35236] gi|238704504|gb|EEP97034.1| OmpA domain protein [Yersinia aldovae ATCC 35236] Length = 433 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 234 TPMFDKSSSIPLPETI--VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 P+FD +S+ P +L + ++L H+ I I GH+D + N +S Sbjct: 312 APLFDSNSTKLKPNAQTNEILHSLLQLLEHNQGSKILIVGHSDNT---GSDSFNMTISEQ 368 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA L+K+ I G ++D NRR+++L+ +Q Sbjct: 369 RALVVRDWLIKNSSLSSENFIIRGMGSLEPVASNDTKIGQDQNRRVEVLLLPKQ 422 >gi|130681|sp|P22263|PORF_PSESY RecName: Full=Outer membrane porin F; Flags: Precursor gi|151407|gb|AAA25910.1| oprF [Pseudomonas syringae] Length = 344 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ + A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESKPVADNATEAGRAVNRRVE 336 >gi|330824570|ref|YP_004387873.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|329309942|gb|AEB84357.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 219 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ A N +LS+ RA + Sbjct: 112 FFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 169 VKAYLVSKGIEKNRVY-TEGKGEKQPIADNKTKEGRAKNRRVEIEV 213 >gi|315637845|ref|ZP_07893035.1| fibronectin-binding protein [Campylobacter upsaliensis JV21] gi|315482086|gb|EFU72700.1| fibronectin-binding protein [Campylobacter upsaliensis JV21] Length = 327 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P +Q I +VL + I + GHTD + N +LS RA Sbjct: 223 FEFDKTTINPAFESRIQNIAKVLEENEKYNTI-LEGHTDNT---GSRAYNQKLSERRAQR 278 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 LMK G+ + RI + G+ + + +++ + NRR++ Sbjct: 279 VANELMKFGIEKSRIE-VKGYGQDKPRSSNETKEGRADNRRVE 320 >gi|254510529|ref|ZP_05122596.1| OmpA family protein [Rhodobacteraceae bacterium KLH11] gi|221534240|gb|EEE37228.1| OmpA family protein [Rhodobacteraceae bacterium KLH11] Length = 208 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +L + + + + GHTDA + N RL RA +A Sbjct: 65 FAFDSAQLDASAQRILLQQADWIKQFPEVRFRVYGHTDAV---GTSAYNKRLGQRRANAA 121 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L + G+S R+ + F R +A+ + NRR Sbjct: 122 VAFLTQQGISRSRLEAVVSFGKSRPLVATPDRDRRNRR 159 >gi|121594804|ref|YP_986700.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42] gi|222110597|ref|YP_002552861.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY] gi|120606884|gb|ABM42624.1| OmpA/MotB domain protein [Acidovorax sp. JS42] gi|221730041|gb|ACM32861.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY] Length = 218 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ A N +LS+ RA + Sbjct: 111 FFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDS--IGTDAY-NQKLSVRRAEA 167 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 168 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTKEGRAKNRRVEIEV 212 >gi|157963436|ref|YP_001503470.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848436|gb|ABV88935.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 224 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDAS 275 TR+G I I++ N F + VL + V L + +++ GHTD+ Sbjct: 99 VSVTRSGDNI-ILNMPNDVTFGVDQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDS- 156 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N RLS RA L + V R++ G + +++ + NRR Sbjct: 157 --SGAESYNLRLSQVRASEVANYLTRQKVPAQRVAS-HGMGESKPIASNETKQGRAENRR 213 Query: 334 IDILV 338 ++I++ Sbjct: 214 VEIIL 218 >gi|330898192|gb|EGH29611.1| outer membrane porin OprF [Pseudomonas syringae pv. japonica str. M301072PT] Length = 344 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 QVL+ + GV R++ + G+ + A++ + NRR++ Sbjct: 295 KQVLVNQYGVGASRVNSV-GYGESKPVADNATEAGRAVNRRVE 336 >gi|325286304|ref|YP_004262094.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321758|gb|ADY29223.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 372 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277 GI + I +F S + E L+++ L + ++I GH+D Sbjct: 236 VEDEGINLDEIYVIKDLLFTSDSYVINKEAKGQLRELVRHLKRNPRLNVTIYGHSDNE-- 293 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 A+ N LSL+RA S + L+ +G++ DRI K G+ ++ NRR++ Sbjct: 294 -GDAKYNKLLSLNRAKSVGEFLLDNGLTFDRI-KWQGYGDEIPLATNNSETGRLKNRRVE 351 Query: 336 ILVEDRQ 342 +V + + Sbjct: 352 FVVSESK 358 >gi|170288056|ref|YP_001738294.1| OmpA/MotB domain-containing protein [Thermotoga sp. RQ2] gi|170175559|gb|ACB08611.1| OmpA/MotB domain protein [Thermotoga sp. RQ2] Length = 288 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265 +++ + E G LI + D F+ S+ E +L K+G+ V+ H+T V Sbjct: 88 LSEEYKGKITVEERDEGTLIVLKDM---VFFEPGSAKLTAEAKELLAKVGQIVIEHTTNV 144 Query: 266 ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + G+ D P N NW LS RA S + + E R+ Sbjct: 145 LEVYGYADDRLPLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 189 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 1/133 (0%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 ++ W Y+D +T+L+ FF+ + ++ + + N + Sbjct: 3 KKREEEQKGSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGNPPSV 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G P +S+ I + + + + ++ + F +++ Sbjct: 63 LMGGRSINEEPLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIVLKDMVFFEPGSAKL 122 Query: 140 SEHCKNSLTRDSE 152 + K L + + Sbjct: 123 TAEAKELLAKVGQ 135 >gi|124008000|ref|ZP_01692700.1| peptidoglycan associated periplasmic protein, putative [Microscilla marina ATCC 23134] gi|123986584|gb|EAY26383.1| peptidoglycan associated periplasmic protein, putative [Microscilla marina ATCC 23134] Length = 472 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 14/140 (10%) Query: 209 DNIVKGVLFETTR--TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265 K V+ + T+ TG I++ D FD +S+ + + L ++ ++L + Sbjct: 341 KGASKNVMVKLTKLKTGAKIALNDIY----FDFNSAALKDSSFIELNRVVKMLQTNPKVK 396 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 +SI HTD N +LS RA S L + + ++R+ GF R + + Sbjct: 397 LSIEAHTDNV---GSKAKNLKLSNRRAKSVADYLKEKKIDQNRLV-TKGFGEDRPLVPNT 452 Query: 326 P--MNSANRRIDI-LVEDRQ 342 + NRR+++ ++ Q Sbjct: 453 SKKNKAKNRRVELRVIRSTQ 472 >gi|91791747|ref|YP_561398.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91713749|gb|ABE53675.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 201 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q +F +S + P+ ++ I ++ ++I GH + N LS Sbjct: 73 QELKILFPTNSYVLDPQYYGQIELIANMMKQYPNTNVTIEGHCSK---KGSYELNMALSH 129 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI--DI 336 +RA + QVL G++ R++ I G++ R SD + NRR+ +I Sbjct: 130 NRANAVTQVLTSQFGIAPSRLNAI-GYSFDRPVDMSDTEEAHRRNRRVIAEI 180 >gi|330820746|ref|YP_004349608.1| putative outer membrane protein A precursor [Burkholderia gladioli BSR3] gi|327372741|gb|AEA64096.1| putative outer membrane protein A precursor [Burkholderia gladioli BSR3] Length = 222 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 E T +I ++ +F + P L ++ +S+ G+TD+ Sbjct: 101 EPTPAVAVIEHVNLSGDVLFASDHATLAPSARESLDQLLSERTDRVYSEVSVTGYTDSV- 159 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRID 335 N LS RA S L G+ + G A + ++NRR++ Sbjct: 160 --GSDEYNLDLSKRRAESVAAYLSAHGLKTGSMKVSGRGKADPVASNMTAEGRASNRRVE 217 Query: 336 ILV 338 I + Sbjct: 218 ITL 220 >gi|330817987|ref|YP_004361692.1| OmpA family protein [Burkholderia gladioli BSR3] gi|327370380|gb|AEA61736.1| OmpA family protein [Burkholderia gladioli BSR3] Length = 216 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATDQYAITPAFAPLLNDLASTLNQNPQITASVVGYTDST---GSAAHNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L++ GV+ R+ G A++ + NRR++I + Q Sbjct: 165 VTALVQRGVAGGRLGA-QGMGASNPVADNATEAGRAQNRRVEIYLRAPQ 212 >gi|254467600|ref|ZP_05081009.1| OmpA/MotB domain protein [Rhodobacterales bacterium Y4I] gi|206684348|gb|EDZ44832.1| OmpA/MotB domain protein [Rhodobacterales bacterium Y4I] Length = 191 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + L + E + + I GHTD+ A N RLSL RA Sbjct: 90 FDFDSAALRADQAPKLANMCESMKLMGGTVFQIIGHTDS---SGSASYNERLSLLRAQEV 146 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L+ S GV ED + K G +P NRR++ Sbjct: 147 RRHLISSCGVPED-MLKAIGMGETAPFNQDNPRADENRRVE 186 >gi|218515615|ref|ZP_03512455.1| hypothetical conserved membrane protein [Rhizobium etli 8C-3] Length = 246 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 F SS P+ +LQK+ V+ I I GHTDA AR N LS+ RA Sbjct: 142 RVQFAFDSSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRA 198 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + +R+ + G P NRR++ Sbjct: 199 REVARFFTEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 241 >gi|148975688|ref|ZP_01812519.1| outer membrane protein [Vibrionales bacterium SWAT-3] gi|145964761|gb|EDK30013.1| outer membrane protein [Vibrionales bacterium SWAT-3] Length = 355 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ E +Q I EVL ++I GHTD++ A N +S RA + Sbjct: 235 FATNSTELSDEGKAAVQPIVEVLQTYPQSTVNIVGHTDST---GAAEYNMMISKKRAAAV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + + G+ RI+ SG + ++D + NRR++ Sbjct: 292 AAYIEEQGIESSRITA-SGEGEEKPIASNDTAEGRAQNRRVE 332 >gi|326405348|ref|YP_004285430.1| hypothetical protein ACMV_32010 [Acidiphilium multivorum AIU301] gi|325052210|dbj|BAJ82548.1| hypothetical protein ACMV_32010 [Acidiphilium multivorum AIU301] Length = 203 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S+ P+ + L ++G L + + GHTD + A N LS RA Sbjct: 97 FATGSAKLTPQAVTELDRLGRALTDKTLAAYHFRVVGHTDTT---GAASTNLALSQARAA 153 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 + LM + R+ + +G L + + P N ANRR+ I+ Sbjct: 154 AVKTYLMSKFDIPATRL-QATGVGEADLLVPTGPNVANRANRRVQII 199 >gi|290559940|pdb|2KGW|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Ompatb, A Pore Forming Protein From Mycobacterium Tuberculosis Length = 129 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L + ++I G+TD + N LS RA Sbjct: 28 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 84 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ D I+ + G ++ + NRR++I+V Sbjct: 85 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 128 >gi|254253774|ref|ZP_04947091.1| OmpA/MotB [Burkholderia dolosa AUO158] gi|124898419|gb|EAY70262.1| OmpA/MotB [Burkholderia dolosa AUO158] Length = 232 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S+ P L K+ L + I + G+TDA + A + LS RA Sbjct: 130 FATDSATLTPAARAALDKL---LNRQGDRHFSRIEVTGYTDA--VGSDAYNV-ALSRRRA 183 Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339 + L + G++ D G A A+ ++NRR++I ++ Sbjct: 184 DAVAAYLRERGLNADSFVATGKGKADPGASNATAEGRASNRRVEISLQ 231 >gi|149915641|ref|ZP_01904167.1| OmpA/MotB [Roseobacter sp. AzwK-3b] gi|149810533|gb|EDM70376.1| OmpA/MotB [Roseobacter sp. AzwK-3b] Length = 218 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + + GHTD N L RA + Sbjct: 74 FAFDSAHLDAAARNTLNAQASWIKQFPEVRFRVYGHTDKV---GSESYNRHLGQRRANAV 130 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + + + + ++ NRR Sbjct: 131 VNYLTSHGISRSRLEAVVSYGETQPVVVTEGREPRNRR 168 >gi|187925731|ref|YP_001897373.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] gi|187716925|gb|ACD18149.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 584 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291 F +S+ + L++ VL + + G++D + N +LS R Sbjct: 478 FASASAHVPASAVDDLKQSARVLNACAGNGKTARLEVAGYSDNV---GGEQANLQLSKQR 534 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 A + L+K+GV D + G+ R ++D + NRRI+ + Sbjct: 535 ANAVRAYLVKTGVPADSLLA-QGYGQARPVASNDTASGRFANRRIEFV 581 >gi|298524392|ref|ZP_07011801.1| outer membrane protein [Mycobacterium tuberculosis 94_M4241A] gi|298494186|gb|EFI29480.1| outer membrane protein [Mycobacterium tuberculosis 94_M4241A] Length = 181 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L + ++I G+TD + N LS RA Sbjct: 80 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ D I+ + G ++ + NRR++I+V Sbjct: 137 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 180 >gi|296447841|ref|ZP_06889753.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] gi|296254641|gb|EFH01756.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] Length = 209 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S+ V++++G L I GHTDA R A+ N +LS RA Sbjct: 99 FALNSADLRDSDRKVVEQLGVALGEPALKGGTFLIMGHTDA---RGSAKLNQKLSERRAN 155 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + +VL+ GV+ +R+ + G+ LK +D S NRR+ ++ Sbjct: 156 AVKKVLVAEYGVAPERLVAV-GYGQTHLKNPNDGFASENRRVQVV 199 >gi|172064119|ref|YP_001811770.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171996636|gb|ACB67554.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 224 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + ++ +F + P L K+ A T +++ GHTD+ N Sbjct: 111 VEHVNLAGDALFATGLATLTPAARASLDKLLSERADRTYTQVTVTGHTDSV---GNDAAN 167 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L G++ + +SG ++ ++NRR+DI ++ Sbjct: 168 LALSKRRAETVAGYLKAHGLNAQTV-SVSGRGSADPVASNATAEGRASNRRVDISLQR 224 >gi|83646354|ref|YP_434789.1| flagellar motor protein [Hahella chejuensis KCTC 2396] gi|83634397|gb|ABC30364.1| Flagellar motor protein [Hahella chejuensis KCTC 2396] Length = 263 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 47/204 (23%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 L S++ A+K + + + K I + + + + V T + I + Sbjct: 45 LTQKSEQWDDAIKEIAKAEQVRKDILREIEQELNEKNIP-VKISDNDTVLRI----PEDV 99 Query: 235 PMFDKSS-SIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIA-R 282 F + IP + + +IG+VL H+ I + GHTD P+RN + + Sbjct: 100 LTFRQGRFDIPKDQLHQDIALEIGKVLFHTISKNSRWQYLDTIFVEGHTDKVPYRNSSIK 159 Query: 283 DNWRLSLDRAYSA----YQVLMKS---GVSEDRI----SKISGFAHHRLK--IASDPM-- 327 NW LS RA S +L ++ G ++ + +SG+A R +DP Sbjct: 160 GNWGLSTFRAISVWNFWNTMLEENERLGSLKNHMGKTLFSVSGYADTRPVPCTNADPNVT 219 Query: 328 ---------------NSANRRIDI 336 NRRIDI Sbjct: 220 LKELCPVGVLEESESQQKNRRIDI 243 >gi|308271281|emb|CBX27889.1| hypothetical protein N47_G32130 [uncultured Desulfobacterium sp.] Length = 403 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + VL + ++ + + + I+GHTD+ R + N +LS +RA S Sbjct: 301 FDTEKWNIVSQYFPVLDNVVGIIKKNPDMKLEIQGHTDS---RGTEKYNQKLSENRAKSV 357 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L GV +++ G+ + +D + NRR+++ Sbjct: 358 LEYLAGKGVVRSKLTA-KGYGYSVPAAPNDTEEGMAKNRRVEL 399 >gi|325286251|ref|YP_004262041.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321705|gb|ADY29170.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 701 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 88/276 (31%), Gaps = 19/276 (6%) Query: 81 KGIFDEQNPPERSSQNKIDLS--IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 +G D N + + NK D S I+E K +N I N Sbjct: 428 EGFKDVVNVGQPINSNKDDFSYIINEETQKGYFASNRKGGKGDDDIYSFKNLIVEEVNEN 487 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + L D KE + L K +LQ + Sbjct: 488 AIAGVVTEIVTGDLMPNALVTLLDENNIKLKEIVTEEDGSFVFEDLDSNTKYKLQANKET 547 Query: 199 I-SSTLSGLVADNIVKGVLFETTRTGILISIID-----QRNTPMFDKSSSIPLPETIVVL 252 L+ +N V V + +I+I + + FD S + V L Sbjct: 548 FFDEELNTATKENQVVNVDIAMRKLHDMIAIENGIKKLKTEKIFFDFDKSYIRQDASVEL 607 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 K+ +V+ I I HTD R N LS RA S + ++ G+ E+RI Sbjct: 608 DKLVDVMTEYPNMKIKIESHTD---VRGNNAYNKYLSDKRAKSTRKYIISKGIDENRIIS 664 Query: 312 ISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G+ +L S + NRR + ++ + Sbjct: 665 AIGYGEEQLINGCEDGVNCSREKHQENRRSEFIIVE 700 >gi|146281853|ref|YP_001172006.1| chemotaxis protein MotB-related protein [Pseudomonas stutzeri A1501] gi|145570058|gb|ABP79164.1| chemotaxis protein MotB-related protein [Pseudomonas stutzeri A1501] Length = 254 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 36/187 (19%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILISIIDQ------RNT 234 M +++L++ + + L V+ + + R GI + + + N Sbjct: 44 MDIQQKLEERQVQFEQEIEELKKAEQVRRTILDEAVEALRRRGIKVEVSENHTVLSIPND 103 Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRN-IARD 283 + FD + +IG+V+ I I GHTD P + + Sbjct: 104 LLGFDTGAYEIHSAYQARALEIGKVINEVISRDDRVEFLDTIFIEGHTDNRPLPGFMGKG 163 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK-----------ISGFAHHRLKIAS---DPMNS 329 NW LS RA S +Q + E+++S+ +SG+ R +A + Sbjct: 164 NWGLSTFRAISLWQFWGDALAREEQLSRLNNKDGKPLFSVSGYGETRPAVADQVTEEDFK 223 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 224 RNRRIDI 230 >gi|296536326|ref|ZP_06898436.1| outer membrane protein [Roseomonas cervicalis ATCC 49957] gi|296263348|gb|EFH09863.1| outer membrane protein [Roseomonas cervicalis ATCC 49957] Length = 368 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + ++ + + + I + GH D + N RLS RA + Sbjct: 266 FFDFDRADLTDRARQIIAEAAQNSSRVQATRIEVAGHADR---AGSPQYNQRLSQRRADA 322 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L++ GV+ I+ + F R + + NRR++I++ Sbjct: 323 VAAELVRLGVARSAIT-VQAFGESRPLVPTADGVREPQNRRVEIVL 367 >gi|86608243|ref|YP_477005.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556785|gb|ABD01742.1| OmpA family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 357 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 91/240 (37%), Gaps = 20/240 (8%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 L + I +++K + +++ Q N + + + K+ + Sbjct: 128 LGYNNQIAHEILNMKGTYSTPEERAQWPFQNARENTAAYLAARGKSPEGDERFVSAYFVV 187 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 +TD + I + ++ ++ + K R Q L + + S SG + I + Sbjct: 188 NTD-DWEITRGSGQIPTGITLGRVDVVDVKPRQQRL-ELVESITSGEINQAISRDG---- 241 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFR 278 I++ +F S L +I +++ + I + GHTDA+ Sbjct: 242 -----RIALY----GILFAYDSDQIEAAAEPTLAEIAKLMRERTDLSILVVGHTDAT--- 289 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337 N LS RA + L++ G+ + R+ + GF+ ++ + NRR++++ Sbjct: 290 GSFDYNLGLSRRRAEAVVNRLVQLGIEQRRLYPVGVGFSAPVASNTTEEGRAKNRRVELV 349 >gi|268680520|ref|YP_003304951.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268618551|gb|ACZ12916.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 335 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + +QK+ + + + + + GHTD+ + N +LS RA + Sbjct: 233 FDFDKSVVKPAFMPEIQKVADFMKQNPGYSVVLEGHTDS---KGSDAYNQKLSDSRAKAV 289 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 + L GV+ +++ + + +D + NRR+D Sbjct: 290 AKALSNLGVAAAKVT-TEAYGESKPVATNDTEAGRAENRRVD 330 >gi|221640500|ref|YP_002526762.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161281|gb|ACM02261.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 652 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 11/124 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIA 281 I + F+ S+ L + EV + I GHTD+ Sbjct: 487 RIRRVLAGQKITFEPGSAEIDRSARGTLDGLAEVFKVCKAMP--LEISGHTDSQ---GSE 541 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 N LS RA + L V R+ + G+ R ++ ANRRI+ + Sbjct: 542 GGNKALSQARAEAVLLALQGRRVDVGRMKAV-GYGEERPIADNGNEEGREANRRIEFTLL 600 Query: 340 DRQG 343 G Sbjct: 601 GEDG 604 >gi|90023231|ref|YP_529058.1| HAD family hydrolase [Saccharophagus degradans 2-40] gi|89952831|gb|ABD82846.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 380 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS+ PE ++K+ + +A V+ I GHTD R A N LS RA + Sbjct: 269 FDSNSSVVKPEYFAEIRKVADFMAQYENSVVVIEGHTDT---RGAAAYNKSLSQKRADAV 325 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 VL+ V++ R++ + G+ + ANRR+ Sbjct: 326 AAVLVSEMNVAKRRVTSV-GYGEEQPIADESTREGLVANRRV 366 >gi|269968226|ref|ZP_06182255.1| putative lipoprotein [Vibrio alginolyticus 40B] gi|269827149|gb|EEZ81454.1| putative lipoprotein [Vibrio alginolyticus 40B] Length = 281 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 177 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 233 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 234 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 281 >gi|261251362|ref|ZP_05943936.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] gi|260938235|gb|EEX94223.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] Length = 329 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS + L ++ L E + + GHTD++ + N LS+ RA Sbjct: 221 FDSESSELNESSSQQLSQLVATLKEYPEAKVEVVGHTDST---GSSSYNQALSIQRATEV 277 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L G+ RI I G + + + NRR+++ + Sbjct: 278 SNFLESEGIDSSRI-SIDGHGETQPIAPNSTSQGRANNRRVEVTI 321 >gi|149913423|ref|ZP_01901956.1| OmpA domain protein [Roseobacter sp. AzwK-3b] gi|149812543|gb|EDM72372.1| OmpA domain protein [Roseobacter sp. AzwK-3b] Length = 638 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS ++ I E+L + I I GHTD+ N RLS +RA + Sbjct: 499 FEPGSSTIDGNGAAIMDDIAEILRECGDIRIEIGGHTDSQ---GREEMNERLSQERAQAV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 L V + G+ + +D ANRRI+ + Q Sbjct: 556 LNELRARRVLTSSFTA-KGYGESQPIADNDTEEGREANRRIEFRLLRPQ 603 >gi|285017932|ref|YP_003375643.1| hypothetical protein XALc_1141 [Xanthomonas albilineans GPE PC73] gi|283473150|emb|CBA15656.1| hypothetical protein XALc_1141 [Xanthomonas albilineans] Length = 231 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + R G I++ + FD + S P+ L + + L+ + +I + GHT Sbjct: 104 NTGIDVRRDGDNITLN-LPDGITFDFNQSTLKPQFYSALNGVAKTLSEYNQTMIEVVGHT 162 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSAN 331 D N RLS RA S L GV +RI + +G + +++ + N Sbjct: 163 DNI---GSDAVNQRLSEQRASSVAAYLTAQGVQPERIQTLGAGKKYPIADNSTEAGRAQN 219 Query: 332 RRIDILVED 340 RR++I V Sbjct: 220 RRVEIRVVP 228 >gi|262371451|ref|ZP_06064767.1| outer membrane protein A precursor [Acinetobacter johnsonii SH046] gi|262313590|gb|EEY94641.1| outer membrane protein A precursor [Acinetobacter johnsonii SH046] Length = 159 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 10/139 (7%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST- 263 ++K F T G + + +F S L+ + + L Sbjct: 28 NYKQARMLKKQGFTLTEEGWTLRL---PEKLLFGFDQSDIQASQKPALEALSKQLQQYNL 84 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322 I + GHTD + + N LS RA + Q+ +++G I + G + + Sbjct: 85 NKIKVVGHTDN--IGDPSY-NQTLSEKRASTVSQIFIETGFKTQNIQSM-GRGASQPLVE 140 Query: 323 -ASDPMNSANRRIDILVED 340 +S+ + NRR++I++ Sbjct: 141 NSSEENRALNRRVNIIIIP 159 >gi|258545330|ref|ZP_05705564.1| OmpA family protein [Cardiobacterium hominis ATCC 15826] gi|258519433|gb|EEV88292.1| OmpA family protein [Cardiobacterium hominis ATCC 15826] Length = 244 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 13/134 (9%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 VA++ V+ + + I + +FD ++ P L I + L E V Sbjct: 108 VANSGVQVQRVNESTIQLNIQ-----SEVLFDVDKAVIKPNFYQPLGSIAQTLQQYPETV 162 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + + G TD + N +LS RA S Q L + G++ R + G+ ++ Sbjct: 163 VHVYGFTDG---SGSPQHNLQLSQRRAQSVAQYLAQQGINSQRFV-VQGYGEQYASAENN 218 Query: 326 PMNSANRRIDILVE 339 P + RR+ I ++ Sbjct: 219 PQD---RRVAIYIK 229 >gi|86142013|ref|ZP_01060537.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein-like [Leeuwenhoekiella blandensis MED217] gi|85831576|gb|EAQ50032.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein-like [Leeuwenhoekiella blandensis MED217] Length = 435 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + +++I + + + +T I GHTD+ + LS RA + Sbjct: 333 FDSGSASIQPASYASIKQIAQAIQSDATGNYLITGHTDSDGDVALNMP---LSESRAEAV 389 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L+ G+ R+ + +G + + + NRR+ I Sbjct: 390 KAALVSEFGIDSSRL-QTAGKGSSEPVSTENTVTAKALNRRVTI 432 >gi|258622653|ref|ZP_05717674.1| putative lipoprotein [Vibrio mimicus VM573] gi|262171774|ref|ZP_06039452.1| outer membrane protein [Vibrio mimicus MB-451] gi|258585109|gb|EEW09837.1| putative lipoprotein [Vibrio mimicus VM573] gi|261892850|gb|EEY38836.1| outer membrane protein [Vibrio mimicus MB-451] Length = 223 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I GHTD++ Sbjct: 99 VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVAYPDTSLVIEGHTDST 158 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N LS RA S L+ GV+ R G ++ + NRR Sbjct: 159 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 214 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 215 VEIQILPLK 223 >gi|254500568|ref|ZP_05112719.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222436639|gb|EEE43318.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 193 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 20/180 (11%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + + E ++ + K + L + + + + + + Sbjct: 21 ASAQTELSRNQIINSLQGAQEKVEVSADALQRAALENIQKYPGADSPQTIPMYQQLASLR 80 Query: 226 ---ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFR 278 I I FD S+ PE+ + I + L H+ I GHTDA + Sbjct: 81 QFNIEIT-------FDFDSARIRPESYEAVGLIADAL-HTPYLQGQTFFIVGHTDA---K 129 Query: 279 NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 N LS RA + + L+ + V + + G +L+ +DP + NRR+ ++ Sbjct: 130 GDRTYNLELSQRRAQAIREALVTTFQVPGSTLFSV-GLGEEQLRDPADPFAAVNRRVQLI 188 >gi|281411904|ref|YP_003345983.1| OmpA/MotB domain protein [Thermotoga naphthophila RKU-10] gi|281373007|gb|ADA66569.1| OmpA/MotB domain protein [Thermotoga naphthophila RKU-10] Length = 288 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265 +++ + E G LI + D F+ S+ E +L K+G+ V+ H+T V Sbjct: 88 LSEEYKGKITVEERDEGTLIVLKDM---VFFETGSAKLTVEAKELLAKVGQIVIEHTTNV 144 Query: 266 ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + I G+ D P N NW LS RA S + + E R+ Sbjct: 145 LEIYGYADDRLPLPNSIYVSNWHLSSARAASVVNFFLTE-LKEKRM 189 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 1/133 (0%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTA 79 + + W Y+D +T+L+ FF+ + ++ + + N + Sbjct: 3 KKRKEEQKSSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVAVGLRIALSGNPPSV 62 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G P +S+ I + + + + ++ + F +++ Sbjct: 63 LMGGKSINEEPLITSKRGIYQELMRLSEEYKGKITVEERDEGTLIVLKDMVFFETGSAKL 122 Query: 140 SEHCKNSLTRDSE 152 + K L + + Sbjct: 123 TVEAKELLAKVGQ 135 >gi|87121178|ref|ZP_01077069.1| Thrombospondin type 3 repeat:OmpA/MotB [Marinomonas sp. MED121] gi|86163670|gb|EAQ64944.1| Thrombospondin type 3 repeat:OmpA/MotB [Marinomonas sp. MED121] Length = 200 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 10/114 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 F+ S+ + ++K+ + + + + I GHTD N LS RA Sbjct: 76 KVFFETDSTEIRFQYYKEIKKLADFMKDNPSSKVVIEGHTDN---SGRQSYNQSLSYKRA 132 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI--DILVEDR 341 + +L++S +S R+ I G++ R ++ NRR+ +I ++ + Sbjct: 133 QAIADILIQSFKISAKRVKAI-GYSESRPIASNASAEGKKKNRRVVAEISIQTK 185 >gi|323498434|ref|ZP_08103430.1| outer membrane protein OmpA [Vibrio sinaloensis DSM 21326] gi|323316507|gb|EGA69522.1| outer membrane protein OmpA [Vibrio sinaloensis DSM 21326] Length = 322 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287 Q T F +S+ PE+ L K+ + L + + + G+TD A N + Sbjct: 205 TQQLGTGSFKLNSTELNPESASQLDKLVDFLNTYPQATVEVIGYTDT---SGAASYNQMI 261 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S RA S L GV RIS G + ++ NRR++++V Sbjct: 262 SEKRAQSVAAALEAKGVDASRISA-KGEGENDPIASNATREGREMNRRVEVIV 313 >gi|167622915|ref|YP_001673209.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352937|gb|ABZ75550.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 356 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 17/119 (14%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARD 283 +IS+ D ++ + S L + E L S E I +I+G+TD+ + A Sbjct: 243 VISLFDFDSSELTHSGS----------LAPVIERLKQSPEAIANIKGYTDS---KGNATY 289 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 N LS RA + L+ +G+ ++I + G+ + +D NRR+ I ++ Sbjct: 290 NQALSERRAQAVADYLIAAGIKPEQIE-VHGYGEQFPLMKNDTPEHRHENRRVLIHIQS 347 >gi|323497435|ref|ZP_08102453.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326] gi|323317518|gb|EGA70511.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326] Length = 222 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 14/212 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C+ + +++ G+ ST I + + + +++ + + Sbjct: 15 SGCQATQRQNATTGESETNSTTTGAIIGALAGAAVGVATGDDAKDRRKRALIGATGGAVV 74 Query: 201 STLSGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQ 253 G D + + E +G+ + ++ N F +S L Sbjct: 75 GGGVGYYFDKQEEALRQELLNSGVQVERVGENQLLLRLENGIGFATASHTLDSGIRNTLN 134 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +L + + I G TD++ N LS RA S L+ GV+ R Sbjct: 135 GVARILVEYPDTSLVIDGFTDST---GSDTTNQLLSERRAESVRSYLVSQGVAAGRAIA- 190 Query: 313 SGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G ++ + NRR++I + + Sbjct: 191 RGNGERHPLCTNSTAEGRACNRRVEIQILPLK 222 >gi|289761034|ref|ZP_06520412.1| outer membrane protein A ompA [Mycobacterium tuberculosis GM 1503] gi|289708540|gb|EFD72556.1| outer membrane protein A ompA [Mycobacterium tuberculosis GM 1503] Length = 232 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L + ++I G+TD + N LS RA Sbjct: 131 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIV 187 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ D I+ + G ++ + NRR++I+V Sbjct: 188 ADYLVARGVAGDHIATV-GLGSVNPIASNATPEGRAKNRRVEIVV 231 >gi|190895263|ref|YP_001985556.1| hypothetical protein RHECIAT_PC0000936 [Rhizobium etli CIAT 652] gi|190700924|gb|ACE95006.1| hypothetical conserved membrane protein [Rhizobium etli CIAT 652] Length = 246 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 F SS P+ +LQK+ V+ I I GHTDA AR N LS+ RA Sbjct: 142 RVQFAFDSSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRA 198 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + +R+ + G P NRR++ Sbjct: 199 REVARFFTEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 241 >gi|88802038|ref|ZP_01117566.1| outer membrane protein [Polaribacter irgensii 23-P] gi|88782696|gb|EAR13873.1| outer membrane protein [Polaribacter irgensii 23-P] Length = 450 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 13/143 (9%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQ-RNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 T++G+ ++ V+ + G +D +F S+ L + ++ Sbjct: 317 TVAGIASEGGCPEVITNEAKMG-----MDTFAEAILFTLESANFQRGVRKDLDGMLAIIN 371 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + +IRG+TD N +LS RA + L+K+G+ R++ ++GF Sbjct: 372 EFPQANFAIRGYTD---VSGSVSGNLKLSNSRANAVKDYLVKNGIDAARLT-VAGFGQES 427 Query: 320 LKIASDPMNSA--NRRIDILVED 340 ++ NRR+++ V + Sbjct: 428 PTASNKTRAGRIQNRRVEVKVTN 450 >gi|107025501|ref|YP_623012.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116693317|ref|YP_838850.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|170737407|ref|YP_001778667.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105894875|gb|ABF78039.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116651317|gb|ABK11957.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] gi|169819595|gb|ACA94177.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 221 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 +I ++ +F + P L ++ A T +++ G TD+ Sbjct: 107 VIERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSV---GSDDY 163 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339 N LS RA S L G+ D I+ G A A+ ++NRR++I ++ Sbjct: 164 NLALSKRRAESVAAYLKAHGLKTDSITVSGRGKADPVASNATPEGRASNRRVEIRLQ 220 >gi|168703394|ref|ZP_02735671.1| OmpA/MotB domain protein [Gemmata obscuriglobus UQM 2246] Length = 183 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 8/180 (4%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKNLMTASKG-IF 84 GSWK+ YADF+T +MAFFLVMW I A D ++++ YF +P G + S G + Sbjct: 2 AKGGGSWKVAYADFVTAMMAFFLVMW-IGAQDVKVRQSVANYFIDPAGVSKKPVSDGAVL 60 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST-----NQKKQYQRLENNIFYLSNSQQ 139 + + + Q ++ + V + N R Sbjct: 61 ETPSSGPVAGQLQVAGGRGTRVPSGGVPSPSTAAILNWINADAARSRHWKGEAQRVREAA 120 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + +R E+ + S L + +P + K+ + + ++ + +A + Sbjct: 121 AAQKAVNESRTPEEVEIAQLSQLLASDLAGTVPKDMPEVYKDLLFSAFKEVNWEQVAGTL 180 >gi|322417797|ref|YP_004197020.1| hypothetical protein GM18_0255 [Geobacter sp. M18] gi|320124184|gb|ADW11744.1| conserved repeat domain protein [Geobacter sp. M18] Length = 2257 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 7/111 (6%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF----RNIARDNWRLSL 289 P F + E L ++ E+L I + GHTD RNI +N LS Sbjct: 827 PHFPTFGAELSGEDRKELDRLAELLRRFDINHIEVTGHTDLVRIAPRSRNIYANNTALSF 886 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 RA S + L + ++G ++ + + NRR+++ V Sbjct: 887 ARARSVGRYLTAALHLPPESLDLTGRGEREPVASNGMEAGRAQNRRVEVKV 937 >gi|259419273|ref|ZP_05743190.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259345495|gb|EEW57349.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 1617 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + + VL++ + L V I GHTD + N LS RA Sbjct: 465 FATGKADIREAGLGVLKQAADALKALGAENYVFLIEGHTD---ITGSDKVNLPLSDARAK 521 Query: 294 SAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 S Q ++ +G++ +R+ + G+ + NRR++I Sbjct: 522 SVEQYFVESAGIAPERLQTV-GYGSRIPLATNATDRGKQTNRRVEI 566 >gi|91785602|ref|YP_560808.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans LB400] gi|91689556|gb|ABE32756.1| outer membrane porin, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 584 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291 F +S+ + L + VL + + G++D N +LS R Sbjct: 478 FASASARVPASAVEDLNQSAHVLNACAGNGKTARLEVAGYSDNV---GGEAANLQLSKQR 534 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 A + L+++GV D + G+ R ++D + NRRI+ + Sbjct: 535 AEAVRAYLVRTGVPADSLIA-QGYGDARPVASNDTASGRFANRRIEFV 581 >gi|327193535|gb|EGE60427.1| hypothetical conserved membrane protein [Rhizobium etli CNPAF512] Length = 246 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 F SS P+ +LQK+ V+ I I GHTDA AR N LS+ RA Sbjct: 142 RVQFAFDSSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRA 198 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + +R+ + G P NRR++ Sbjct: 199 REVARFFTEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 241 >gi|240172204|ref|ZP_04750863.1| outer membrane protein a OmpA [Mycobacterium kansasii ATCC 12478] Length = 332 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P +L ++ L + +++ G++D N+ LS+ RA + Sbjct: 231 FKNDGVSLTPADNQILSQVAAKLKACPDARVTVNGYSDN---GGGEGINFPLSVQRATTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L GV+ D I+ G+ ++D + NRR++I+V Sbjct: 288 ADFLAAQGVARDHITA-RGYGSANPIASNDTPEGRAKNRRVEIVV 331 >gi|239501745|ref|ZP_04661055.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter baumannii AB900] Length = 349 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 224 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 280 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 281 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 339 Query: 342 Q 342 Q Sbjct: 340 Q 340 >gi|254282997|ref|ZP_04957965.1| outer membrane fibronectin-binding protein [gamma proteobacterium NOR51-B] gi|219679200|gb|EED35549.1| outer membrane fibronectin-binding protein [gamma proteobacterium NOR51-B] Length = 227 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 I+ + F S+ + VL E + + + GH D+ N Sbjct: 116 IVFSGDVLRFAFDSAELPADAASVLADAVEFVDAMGGKKLIVSGHADS---SGPDAYNQS 172 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 LS RA + L++SG+ E ++ + G+ + + NRR++I Sbjct: 173 LSQRRADAVKAFLVESGIPERQLEAV-GYGETMPVADNATASGRAQNRRVEI 223 >gi|262376326|ref|ZP_06069556.1| predicted protein [Acinetobacter lwoffii SH145] gi|262308927|gb|EEY90060.1| predicted protein [Acinetobacter lwoffii SH145] Length = 492 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 111/339 (32%), Gaps = 23/339 (6%) Query: 11 NDQFIIIKKKVAIDDTPNNLGSW-KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 N + ++ ++ + + + W I++ + + FLV + +D+ Sbjct: 152 NQEPVLAEQTIIVQEERKTGFLWPFIIF--LILAGLILFLVRSCMQDDVEDSNTQATSEV 209 Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ---YQR 126 + S G E + N + I ++ K + IG + + Sbjct: 210 AAAQPASLRLSTGSNGEIVSCQLQLNNPQYMEILQNEIKQIFNYNIGCGALSSEVYHSEF 269 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 ++ + SL + + + + + ++ + Sbjct: 270 IDQDTIPTVLRTMQGMPNVSLDWIGNQVSVRAATNAEAERLAAQIRSLAKNVTVVTQQPL 329 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R + + L+ + DN V T + + II+ FD +S+ Sbjct: 330 NRSDVINTANSEAEQALASIKTDN----VKALDVATALNLQIIN------FDTASTEVPE 379 Query: 247 ETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 +VL + +L + VI + GH DA +N LS+ RA + L+ GV+ Sbjct: 380 VNKLVLDQAAALLQRAPHVILKVTGHADAQ---GSEAENKVLSVQRAQAITSYLVGKGVN 436 Query: 306 EDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 ++ + G + + NRR+ V + + Sbjct: 437 PAQLQAV-GMGEDQPVEPNATPAGQFQNRRVTFEVVNTE 474 >gi|322418762|ref|YP_004197985.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320125149|gb|ADW12709.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 465 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + K+ + + +T I GHTD + N +LS RA + Sbjct: 358 FDSGKADIKPQYRDEIAKVADYMKRYTTTTAVIEGHTDNT---GSPSQNMKLSQQRAQNV 414 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L+ + G+ R+S G+ R +D NRRI+ +++ Sbjct: 415 VDYLVNNFGIERSRLSA-KGYGATRRVAYNDTPEGRQKNRRINAVID 460 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +I E + ++G + I GHTD N LS RA + Sbjct: 234 FDIDQAIIRTELHDQIAQVGNFMKKYPTTTAVIEGHTDNV---GSYNHNMDLSQRRAEAV 290 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L++ G+ R+S G+ R A++ NRRI+ +++ Sbjct: 291 VSHLVEQYGIDRSRLSA-KGYGFTRPIADNATEEGRQKNRRIEAVID 336 >gi|254229577|ref|ZP_04922989.1| rickettsia 17 kDa surface antigen family [Vibrio sp. Ex25] gi|151937860|gb|EDN56706.1| rickettsia 17 kDa surface antigen family [Vibrio sp. Ex25] Length = 269 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 165 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 221 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 222 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 269 >gi|149200848|ref|ZP_01877823.1| OmpA family protein [Roseovarius sp. TM1035] gi|149145181|gb|EDM33207.1| OmpA family protein [Roseovarius sp. TM1035] Length = 220 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ L++ + + + GHTDA N L + RA + Sbjct: 74 FAFNSAELDAGARDTLREQAQWIRQFPEVRFRVYGHTDAV---GSDSYNKSLGMRRAQAV 130 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ ++ F + I + NRR Sbjct: 131 VAFLTSQGISRARLEAVASFGETQPLIVTQGRERRNRR 168 >gi|148269399|ref|YP_001243859.1| OmpA/MotB domain-containing protein [Thermotoga petrophila RKU-1] gi|147734943|gb|ABQ46283.1| OmpA/MotB domain protein [Thermotoga petrophila RKU-1] Length = 288 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEV 265 +++ + E G LI + D F+ S+ E +L K+G+ V+ H+T V Sbjct: 88 LSEEYKGKITVEERDEGTLIVLKDM---VFFETGSAKLTVEAKELLAKVGQIVIEHTTNV 144 Query: 266 ISIRGHTDAS-PFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + I G+ D P N NW LS RA S + + E R+ Sbjct: 145 LEIYGYADDRLPLPNSIYVSNWHLSSARAASVVNFFLTE-LREKRM 189 Score = 44.5 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 19/46 (41%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIE 66 + + W Y+D +T+L+ FF+ + ++ + + Sbjct: 3 KKRKEEQKSSPQWMTTYSDMVTLLLTFFVALISMSTISPGKFQQVA 48 >gi|283956854|ref|ZP_06374327.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791580|gb|EFC30376.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 1336] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|157415702|ref|YP_001482958.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|157386666|gb|ABV52981.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|307748343|gb|ADN91613.1| Outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni M1] gi|315930990|gb|EFV09965.1| oprF membrane domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|148925647|ref|ZP_01809335.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845657|gb|EDK22748.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|57238501|ref|YP_179632.1| fibronectin-binding protein [Campylobacter jejuni RM1221] gi|57167305|gb|AAW36084.1| fibronectin-binding protein [Campylobacter jejuni RM1221] gi|315058932|gb|ADT73261.1| Outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni S3] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|121612147|ref|YP_001001127.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167006020|ref|ZP_02271778.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87249779|gb|EAQ72738.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|86152850|ref|ZP_01071055.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843735|gb|EAQ60945.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|86149287|ref|ZP_01067518.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152031|ref|ZP_01070244.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 260.94] gi|88596498|ref|ZP_01099735.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 84-25] gi|205356091|ref|ZP_03222858.1| outer membrane fibronectin binding protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218563079|ref|YP_002344858.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840069|gb|EAQ57327.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841139|gb|EAQ58388.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 260.94] gi|88191339|gb|EAQ95311.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360785|emb|CAL35585.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345934|gb|EDZ32570.1| outer membrane fibronectin binding protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284926685|gb|ADC29037.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315927426|gb|EFV06764.1| oprF membrane domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930550|gb|EFV09590.1| oprF membrane domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 319 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|167589365|ref|ZP_02381753.1| OmpA family domain protein [Burkholderia ubonensis Bu] Length = 333 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ L ++ ++L + + I GHTD N LS RA + Sbjct: 231 FDTDKAQVKPESKPQLDEMAKLLTGNPALKVYIVGHTDNQ---GAFARNADLSQKRAEAV 287 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 Q L + ++ R+ G A ++ D + NRR++++ Sbjct: 288 AQALASTYRIAPARLVA-KGVASLSPVASNGDDAGRAQNRRVELV 331 >gi|255530070|ref|YP_003090442.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343054|gb|ACU02380.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 445 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ +SS+ ++ L K+ VL + ++++G+ + A N +LS DRA S Sbjct: 345 FEFNSSVLKTDSYPTLDKLSSVLRENGGKVTVKGYASSE---GTAAYNLKLSKDRANSVK 401 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L+ SGV+ ++ G+ ++D NRR++ Sbjct: 402 TYLVNSGVNASQVV-TKGYGEANPIASNDTEEGRIQNRRVE 441 >gi|103488577|ref|YP_618138.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] gi|98978654|gb|ABF54805.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] Length = 230 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 18/151 (11%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + KK+ +G + R G + + FD +S++ + Sbjct: 82 MDQQEKKLRERTAGT---------GIDVERQGDQLVLN-MPGDVTFDLNSAMVKSQFRSA 131 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L + LA I + GHTD++ N LS RA S L G+ R+ Sbjct: 132 LDNVAATLAEYPSTYIDVYGHTDST---GSETYNQGLSERRAASVADYLAGRGIQRARM- 187 Query: 311 KISGFAHHRLKIASDPMNSA---NRRIDILV 338 G+ +LK A + + NRR++I + Sbjct: 188 ATLGYGESQLKCAPERTEADYQCNRRVEIRI 218 >gi|332527567|ref|ZP_08403614.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111970|gb|EGJ11947.1| OmpA/MotB domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 +I PE L + + I GHTDA+ N +LS+ RA + L Sbjct: 111 KAILKPEAKAKLDDLAAKAKAVNLEVVIAVGHTDAT---GPDGYNQKLSVKRADAVKAYL 167 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + G+ ++R+ G + + + NRR++I V Sbjct: 168 VDQGIEKNRVY-TEGKGEKQPVADNKTREGRAKNRRVEIEV 207 >gi|170697803|ref|ZP_02888889.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria IOP40-10] gi|170137305|gb|EDT05547.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria IOP40-10] Length = 404 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +R L LA+ + L VA V+ + + + R +F + Sbjct: 251 ETRRALPLDALARNLEQRLRDEVAAGNVELIRAPGSDA------LTLRFGGLFAPGDAAV 304 Query: 245 LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301 P V+ G +A T + + G+ D++ R+ N LS RA Q+L+ Sbjct: 305 APWGASVVASAGREIAVLTGSATVHVAGYADSTSARSTRQASNQALSEARARHVAQILVS 364 Query: 302 SGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340 +GVS RIS + +G A + + NRR+++ + D Sbjct: 365 AGVSAPRISVEGNGEADSLADNGTAAGRARNRRVEVTITD 404 >gi|163742214|ref|ZP_02149602.1| OmpA family protein [Phaeobacter gallaeciensis 2.10] gi|161384544|gb|EDQ08925.1| OmpA family protein [Phaeobacter gallaeciensis 2.10] Length = 211 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ VL + + + GHTDA A N L L RA +A Sbjct: 68 FAFDSAQLDGNAHAVLDQQAHWIRQFPEVRFRVFGHTDAV---GSASYNKALGLRRARAA 124 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ + F + I + NRR Sbjct: 125 VNYLVGRGISRSRLQAVVSFGETQPLIPTSDRERRNRR 162 >gi|93005138|ref|YP_579575.1| OmpA/MotB [Psychrobacter cryohalolentis K5] gi|92392816|gb|ABE74091.1| OmpA/MotB [Psychrobacter cryohalolentis K5] Length = 533 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 15/194 (7%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 KG + + ++ K + ++A ++A ++++ + + DN+ Sbjct: 306 KGDTITVNAADTAALTKLVSDLQAAAPAMTVIAEGPLNEQTEIADSLTASEAAM--DNLG 363 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 + + + +++ F+ ++ +L + +++ + + I GH Sbjct: 364 QNPDPRDVARALSLQVVN------FEVDKAVIPDANKALLDRAVKLMEQVPNMTLMIIGH 417 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329 TD + + A N +LS +RA + L+ GV ++ G + D Sbjct: 418 TDKT--ADAAY-NLKLSEERAQAMKAYLVAQGVDPSKLM-TKGMGETDPIADNTTDQGRF 473 Query: 330 ANRRIDILVEDRQG 343 NRRI+ +V D Sbjct: 474 RNRRIEFVVYDETA 487 >gi|189500991|ref|YP_001960461.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189496432|gb|ACE04980.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides BS1] Length = 350 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD ++ P + V+ +I ++L V+ + GHTD N LS RA + Sbjct: 247 FFDSGKAVIKPASKPVIAEIAKLLKQDPSLVLHVVGHTDN---AGGYTFNMGLSRKRALA 303 Query: 295 AYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337 L + ++ R+ G+ S + NRR++++ Sbjct: 304 VVSALARQHNIASSRLIANGVGYLAPVATNTSAAGRAKNRRVELV 348 >gi|172065209|ref|YP_001815921.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171997451|gb|ACB68368.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 220 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ L K+ L + + + G+TDA+ N LS RA Sbjct: 118 FATDSAVLTSAATAALDKL---LNQQGDRHFARVEVDGYTDAT---GSDAHNQALSKRRA 171 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L G+ D +G ++D + NRR++I ++ Sbjct: 172 DAVAAYLRGHGLKAD-AFAATGHGEANPAASNDTVEGRARNRRVEISLQ 219 >gi|218709383|ref|YP_002417004.1| putative outer membrane protein [Vibrio splendidus LGP32] gi|218322402|emb|CAV18555.1| putative outer membrane protein [Vibrio splendidus LGP32] Length = 204 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ P + ++++ L I ++G+ AS N N +LS +RA + Sbjct: 85 LFANDSAEIKPVFLSQIRQMAAFLKRYENTSIQLQGY--ASKVGNAEY-NLKLSEERAVN 141 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR-LKIASDPMNSANRRI 334 + L+ +G+ R+ + G+ L ++ ++ NR++ Sbjct: 142 VRRALISNGIPPSRVYTV-GYGDAGFLDNDTETNHALNRKV 181 >gi|262165460|ref|ZP_06033197.1| outer membrane protein [Vibrio mimicus VM223] gi|262025176|gb|EEY43844.1| outer membrane protein [Vibrio mimicus VM223] Length = 193 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I GHTD++ Sbjct: 69 VQVVRVGENQLMLRMENGIGFTSSSYQLDSYIHKTLRGVARILVAYPDTSLVIEGHTDST 128 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N LS RA S L+ GV+ R G ++ + NRR Sbjct: 129 ---GSDTTNQVLSEKRAESVRAFLLSQGVAAGRAIA-RGNGERFPLCSNSTAEGRACNRR 184 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 185 VEIQILPLK 193 >gi|260772262|ref|ZP_05881178.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14] gi|260611401|gb|EEX36604.1| outer membrane protein A precursor [Vibrio metschnikovii CIP 69.14] Length = 327 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + ++ F S E+ L K+ L + + I GHTDA+ A N L Sbjct: 210 FQRLDSSSFAFDSVSLNQESKQQLTKLVRFLNQYPQAKVVITGHTDAT---GPAAYNQTL 266 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S RA + L++ G+ RI+ G ++ NRR+DI + Sbjct: 267 SEKRAKAVADALVEQGIQRSRITW-RGEGETNPIASNSTAEGRELNRRVDITI 318 >gi|332524171|ref|ZP_08400398.1| outer membrane protein, ompa family [Rubrivivax benzoatilyticus JA2] gi|332107507|gb|EGJ08731.1| outer membrane protein, ompa family [Rubrivivax benzoatilyticus JA2] Length = 178 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279 G + D +F+ + P I L ++G LA + + + GHTD Sbjct: 60 PEGDDWQL-DLSMALLFEFDADRLAPLQIERLGRLGRELAEAGIHRMHVEGHTDNV---G 115 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 A N LSL RA S + L +G + ++ G R ++ + NRR+ ++ Sbjct: 116 AASYNQALSLRRAASVARALSGAGFDAAGL-QVRGLGAARPIADNTNEAGRARNRRVTLI 174 Query: 338 V 338 V Sbjct: 175 V 175 >gi|307944419|ref|ZP_07659759.1| outer membrane porin F [Roseibium sp. TrichSKD4] gi|307772168|gb|EFO31389.1| outer membrane porin F [Roseibium sp. TrichSKD4] Length = 164 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 + +F + S+ + +L L + I+GH D N LS RA Sbjct: 46 SILFLEGSAALDENSQALLVNQATWLKTYPNWLVKIQGHADD---PGTEAANKTLSTQRA 102 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 L+ GV R+ + G+ R DP NRR+ Sbjct: 103 EVVQAALIAQGVDAKRLW-VKGYGIERPVTDCDPEACQRLNRRV 145 >gi|256829593|ref|YP_003158321.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578769|gb|ACU89905.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 376 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 9/103 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE L + V+ I GHTD+ N +LS RA + Sbjct: 267 FDFDKSDIKPEYHQELADFASYMRQQQSFTVVEIAGHTDSV---GTDEYNQKLSERRAKA 323 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 L+ G+ + + G+ + +D + NRRI Sbjct: 324 VRDYLVNELGMDTN-LFSAVGYGESKPIATNDTDAGRAENRRI 365 >gi|186477828|ref|YP_001859298.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184194287|gb|ACC72252.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 242 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P L ++I G+TD++ + +N RLS RA S Sbjct: 139 FAVGSATLTPFATAKLDDFVAANQGVDVDRLTIAGYTDST--GSAELNN-RLSAARARSV 195 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L +G+ + G+ + + NRR++I V+ + Sbjct: 196 QGYLATAGLRASAWD-VQGYGSASPVAPNKTAIGRAKNRRVEIQVDGK 242 >gi|83643990|ref|YP_432425.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83632033|gb|ABC28000.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 327 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ L +I +++ + I GHTD N LS RA + Sbjct: 225 FDTDKADIKPESAETLAEIAKLMKSQPSLKVLIVGHTDN---AGALDYNRSLSERRAKAV 281 Query: 296 YQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337 L+ + +R++ + G A ++ + NRR++++ Sbjct: 282 MDALVSQYKIGAERMTALGVGMAAPVASNENEAGKAKNRRVELV 325 >gi|332662636|ref|YP_004445424.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331450|gb|AEE48551.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 550 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S+ L ++ VL K+ E++ + ++ + GHTD N RLS R + Sbjct: 447 FETNSAKLLASSLEVLDKVAEIMNRYPDFMLYMDGHTDNV---GEEATNLRLSESRVLAC 503 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 L G+S I + GF + + NRR++ VE + Sbjct: 504 SAYLQTKGISAANI-RTQGFGESKPLADNKTAAGRRQNRRVEFRVEPK 550 >gi|330447262|ref|ZP_08310912.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491453|dbj|GAA05409.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 223 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I I++ N F + + L + V + +++ G TD+ Sbjct: 100 ISVTRDGNNI-ILNMPNEITFGFDQANLNDRAMNALHNVALVAKEYPKTQLNVLGFTDS- 157 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRI 334 + A N RLS RA + L++ GV+ +R IS+ G A+ +++ + NRR+ Sbjct: 158 --KGAASYNLRLSQVRADAVGNYLIRQGVNANRVISQGRGEANPIASNSTENGRAQNRRV 215 Query: 335 DILV 338 +I++ Sbjct: 216 EIIL 219 >gi|254449210|ref|ZP_05062659.1| outer membrane protein [gamma proteobacterium HTCC5015] gi|198261187|gb|EDY85483.1| outer membrane protein [gamma proteobacterium HTCC5015] Length = 229 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 21/219 (9%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + ++ ++S +S + + ++ K D N + P+SK+ I Sbjct: 18 QAHETGYWSNSSGESVRTGTGDCVKTGQWEEAHKGQDCGMRANDSKRRIPTPVSKKPIDM 77 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + KR + K + + + + F S+ Sbjct: 78 DEVAKRKKAQEKAAAEQKAEEQKKALDSVRSINLSSG------------AAFSTGSAKLS 125 Query: 246 PETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + L + L + I GHTD+ N R+S RA + L++ Sbjct: 126 SKGKESLDDLAMKLKALGNGVKSVQIDGHTDSQ---GSESLNQRVSEQRAQAVKSYLVEQ 182 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 GV + G+ + A+ + NRR++I V+ Sbjct: 183 GVDGS-LINTKGYGESQPVADNATAAGRAQNRRVEISVD 220 >gi|37676733|ref|NP_937129.1| putative protein F-related protein [Vibrio vulnificus YJ016] gi|37201276|dbj|BAC97099.1| putative protein F-related protein [Vibrio vulnificus YJ016] Length = 193 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILIS 227 K + P + ++ + +Q ++ S +L + N ++ + G I Sbjct: 25 KTNEELVYPEWGGEEVSPPPPQMMQAQKPQVQSDSLQSFLQRNAIQYQILP----GDHIM 80 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286 I T F S+ P + + +G L I I GH D++ Sbjct: 81 IH-LTETIHFKTGSAEVSPVSARWIGLLGNYLNQRSDVDIVIDGHADSTGTTGFNNS--- 136 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 LS RA + L+ S V E R+ G+ + ++ +N NRR+++++ Sbjct: 137 LSERRAEEVKKQLLMSRVPESRVY-TRGYGEYLPACSNTSINGRKCNRRVELML 189 >gi|146281895|ref|YP_001172048.1| outer membrane protein [Pseudomonas stutzeri A1501] gi|145570100|gb|ABP79206.1| outer membrane protein [Pseudomonas stutzeri A1501] Length = 212 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++ +Q + + + + ++ GHTD+ N RLS RA + Sbjct: 107 FDFDRDVVKQDSYSDIQNLADFMKEYRQTTTVLEGHTDSV---GTDAYNQRLSERRANAV 163 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 +VL+ GV +R++ + G+ R +++ + NRR++ VE R Sbjct: 164 RRVLVDELGVEGNRVNAV-GYGESRPVADNSTEEGRAINRRVEAEVEAR 211 >gi|320158835|ref|YP_004191213.1| protein F-related protein [Vibrio vulnificus MO6-24/O] gi|319934147|gb|ADV89010.1| protein F-related protein [Vibrio vulnificus MO6-24/O] Length = 200 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILIS 227 K + P + ++ + +Q ++ S +L + N ++ + G I Sbjct: 32 KTNEELVYPEWGGEEVSPPPPQMMQAQKPQVQSDSLQSFLQRNAIQYQILP----GDHIM 87 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286 I T F S+ P + + +G L I I GH D++ Sbjct: 88 IH-LTETIHFKTGSAEVSPVSARWIGLLGNYLNQRSDVDIVIDGHADSTGTTGFNNS--- 143 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 LS RA + L+ S V E R+ G+ + ++ +N NRR+++++ Sbjct: 144 LSERRAEEVKKQLLMSRVPESRVY-TRGYGEYLPACSNTSINGRKCNRRVELML 196 >gi|161520471|ref|YP_001583898.1| DotU family type IV/VI secretion system protein [Burkholderia multivorans ATCC 17616] gi|189353338|ref|YP_001948965.1| putative OmpA/MotB family outer membrane protein [Burkholderia multivorans ATCC 17616] gi|160344521|gb|ABX17606.1| type IV / VI secretion system protein, DotU family [Burkholderia multivorans ATCC 17616] gi|189337360|dbj|BAG46429.1| putative OmpA/MotB family outer membrane protein [Burkholderia multivorans ATCC 17616] Length = 405 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +R LA+ + L VA V+ + ++ R MF + Sbjct: 252 EAQRLSPFDALARNLERRLRDEVAAGNVELIRDPARH------VLTLRFAGMFVPGAVTV 305 Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301 P V+ G +A E V+ + G+ D++P + + N LS RA ++L+ Sbjct: 306 APWGASVVASAGREIASIAEGMVVRVVGYADSAPAGSARQVSNQALSEARAEDVARILVA 365 Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 +GV ++ G + + + NRR++++V Sbjct: 366 AGVPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403 >gi|326424248|ref|NP_762484.2| protein F-like protein [Vibrio vulnificus CMCP6] gi|319999634|gb|AAO07474.2| Protein F-related protein [Vibrio vulnificus CMCP6] Length = 198 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%) Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISS-TLSGLVADNIVKGVLFETTRTGILIS 227 K + P + ++ + +Q ++ S +L + N ++ + G I Sbjct: 30 KTNEELVYPEWGGEEVSPPPPQMMQAQKPQVQSDSLQSFLQRNAIQYQILP----GDHIM 85 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286 I T F S+ P + + +G L I I GH D++ Sbjct: 86 IH-LTETIHFKTGSAEVSPVSARWIGLLGNYLNQRSDVDIVIDGHADSTGTTGFNNS--- 141 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 LS RA + L+ S V E R+ G+ + ++ +N NRR+++++ Sbjct: 142 LSERRAEEVKKQLLMSRVPESRVY-TRGYGEYLPACSNTSINGRKCNRRVELML 194 >gi|330995812|ref|ZP_08319709.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] gi|329574542|gb|EGG56107.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] Length = 242 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGH 271 V T G+ + + +F+ SSS L K + + + ++I+G+ Sbjct: 93 QVESVTDANGLQAVKVTFDSGILFNTSSSALSSNATASLAKFASTVLNVNKDMDVAIKGY 152 Query: 272 TDASPFRNIA-----RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 TD ++N + N LSL RA S L + GVS +I+ + G + Sbjct: 153 TDNQGWKNSTAAQSVQKNMDLSLQRANSVSNYLKQCGVSSTQITSVEGLGEADPVADNST 212 Query: 327 MNSA--NRRIDILV 338 NRR+++ + Sbjct: 213 AAGREQNRRVEVYL 226 >gi|197336986|ref|YP_002157822.1| outer membrane protein [Vibrio fischeri MJ11] gi|197314238|gb|ACH63687.1| outer membrane protein [Vibrio fischeri MJ11] Length = 255 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 15/144 (10%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQK 254 ++ L + ++ L T ++ +N + F+ S + VL K Sbjct: 118 VNRELDSIDVESTCSEFLISNTSDALV-----NKNAVLARVYFNFDKSTLTKRSEYVLDK 172 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + + + + GHTD+ + + N+ L L RA YQ L++ G ++ S ++ Sbjct: 173 LYSKMGEKDIKLKVEGHTDS---KGSSTYNYDLGLKRANIVYQYLVQQGAEPNQFSVVT- 228 Query: 315 FAHHRLKIASDPMNSA--NRRIDI 336 + N NRR++I Sbjct: 229 KGEREPIKTNKTANGREKNRRVEI 252 >gi|59713413|ref|YP_206188.1| outer membrane protein [Vibrio fischeri ES114] gi|59481661|gb|AAW87300.1| outer membrane protein [Vibrio fischeri ES114] Length = 253 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 15/144 (10%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQK 254 ++ L + ++ L T ++ +N + F+ S + VL K Sbjct: 116 VNRELDSIDVESTCSEFLISNTSDALV-----NKNAVLARVYFNFDKSTLTKRSEYVLDK 170 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + + + + GHTD+ + + N+ L L RA YQ L++ G ++ S ++ Sbjct: 171 LYSKMGEKDIKLKVEGHTDS---KGSSTYNYDLGLKRANIVYQYLVQQGAEPNQFSVVT- 226 Query: 315 FAHHRLKIASDPMNSA--NRRIDI 336 + N NRR++I Sbjct: 227 KGEREPIKTNKTANGREKNRRVEI 250 >gi|320093629|ref|ZP_08025513.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979417|gb|EFW10895.1| photosystem I P700 chlorophyll a apoprotein A2 [Actinomyces sp. oral taxon 178 str. F0338] Length = 402 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 14/116 (12%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 ++ +FD S + L K+ VL + + GHTD+ N LS Sbjct: 289 DDSVLFDFGESTVRADAADTLAKLASVLTDAGAPTAHVYGHTDSV---GDDASNQTLSEQ 345 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DP-MNSANRRIDILV 338 RA + L K+G + GF + + +P ANRR++I + Sbjct: 346 RAKAVVDELKKNGATTA--LDWKGFGETQPIAPNTNDDGSDNPAGRQANRRVEIYI 399 >gi|262274869|ref|ZP_06052680.1| outer membrane protein [Grimontia hollisae CIP 101886] gi|262221432|gb|EEY72746.1| outer membrane protein [Grimontia hollisae CIP 101886] Length = 197 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P L+++ + L ++I GH AS N N LS RA + Sbjct: 79 FANDSSALRPSNYAKLEQLADFLNDQRDAHVTIEGH--ASKVGNPDY-NLSLSQRRANAV 135 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 + L+ G++ R+ I G+ I D + NRR+ Sbjct: 136 ARALINDFGIAPSRVDAI-GYGDTEPLIDEDSEYAHDVNRRV 176 >gi|95929277|ref|ZP_01312021.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] gi|95134775|gb|EAT16430.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] Length = 217 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 8/144 (5%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + + + R G I + R+ FD S + ++ +L Sbjct: 78 MDQQEQAMRNALASVEGVKIDRDG-NILYVTFRSDNQFDVGSFTLRAGAQQDVARLAAIL 136 Query: 260 AHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I + GHTD++ N LS RA + +L+ SGV RI+ + GF Sbjct: 137 TEYHKTTILVAGHTDST---GSEEYNLGLSERRAMAVRNILVASGVISTRITTV-GFGES 192 Query: 319 RLKIASDPM--NSANRRIDILVED 340 + NRR+ + + Sbjct: 193 APIADNSTEYGRQLNRRVALKITP 216 >gi|171320878|ref|ZP_02909877.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171093863|gb|EDT38995.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 214 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + ++ S+ G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQLTGSVVGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L + GV+ R+S G A+D + NRR++I + Q Sbjct: 165 VNALGQRGVAGGRLSA-QGMGASNPIADNATDAGRAQNRRVEIYLRAPQ 212 >gi|89900364|ref|YP_522835.1| OmpA/MotB [Rhodoferax ferrireducens T118] gi|89345101|gb|ABD69304.1| OmpA/MotB [Rhodoferax ferrireducens T118] Length = 212 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ + A N +LS+ R+ + Sbjct: 106 FFDFDKSVLKPEGKAKLDDLVGKVKDINLEVIIAVGHTDS--VGSNAY-NQKLSVRRSEA 162 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ ++R+ G + + + NRR++I +V R+ Sbjct: 163 VKAYLVSKGIEKNRVY-TEGKGELQPVADNKTKEGRAKNRRVEIEVVGTRK 212 >gi|332668302|ref|YP_004451090.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337116|gb|AEE54217.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 1170 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 27/216 (12%) Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL--QDLA 196 Q E +LT+ +D K + S + L +K L L Sbjct: 965 QPEAMSIALTKKYGVSEDEVKDGLAAVQVKGGSGTLTYAWSNGETLPTAQKLGLGRNTLV 1024 Query: 197 KKISSTLSGLVADNIVKGVLFETT----RTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + + + I K + E T R G I I + FD S I +L Sbjct: 1025 VTDAKGCTATIGVEITKKNIPELTAGRIRNGQAIRIEQLQ----FDVDSINIKSSFIPIL 1080 Query: 253 QKIGEVLAHSTEVI-SIRGHT-----DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 ++ E L + +I + GHT D R LS RA S + L+K G+ Sbjct: 1081 DEVFEFLTDNPGIIVEVGGHTNGLCQDEFCIR--------LSTARAKSVAEYLIKKGIDA 1132 Query: 307 DRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 R+ + G+ + N+R++I + Sbjct: 1133 KRV-QFKGYGRSVPIATNSTPEGRQKNQRVEIKIVR 1167 >gi|327480138|gb|AEA83448.1| outer membrane protein [Pseudomonas stutzeri DSM 4166] Length = 200 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + ++ +Q + + + + ++ GHTD+ N RLS RA + Sbjct: 95 FDFDRDVVKQDSYSDIQNLADFMKEYRQTTTVLEGHTDSV---GTDAYNQRLSERRANAV 151 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 +VL+ GV +R++ + G+ R +++ + NRR++ VE R Sbjct: 152 RRVLVDELGVEGNRVNAV-GYGESRPVADNSTEEGRAINRRVEAEVEAR 199 >gi|83717470|ref|YP_438322.1| hypothetical protein BTH_II0120 [Burkholderia thailandensis E264] gi|257141351|ref|ZP_05589613.1| hypothetical protein BthaA_19409 [Burkholderia thailandensis E264] gi|83651295|gb|ABC35359.1| unnamed protein product; Similar to putative exported protein [Burkholderia thailandensis E264] Length = 558 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F + P + + +LA+ + + I GH+D+ N +LS RA Sbjct: 441 LFATGQATFSPGAAQRELQHALRMILANPEQRVLIVGHSDS---AGSDAVNLQLSKARAR 497 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + GV + R + G + + NRR++IL+ Sbjct: 498 AIRDWFVDQGVLKTRFI-VQGAGDTHPVADNASPLGRAQNRRVEILLIP 545 >gi|332852270|ref|ZP_08434075.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013150] gi|332870493|ref|ZP_08439257.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013113] gi|332729400|gb|EGJ60740.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013150] gi|332732230|gb|EGJ63498.1| outer membrane protein Omp38 [Acinetobacter baumannii 6013113] Length = 353 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 343 Query: 342 Q 342 Q Sbjct: 344 Q 344 >gi|255008683|ref|ZP_05280809.1| OmpA family membrane protein [Bacteroides fragilis 3_1_12] gi|313146419|ref|ZP_07808612.1| outer membrane protein [Bacteroides fragilis 3_1_12] gi|313135186|gb|EFR52546.1| outer membrane protein [Bacteroides fragilis 3_1_12] Length = 224 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + L + +L ++I GHTD N ++S +RAY+ Sbjct: 112 LFAFNSSALSAASKQSLAEFANILKEDPTVDVAIIGHTDKV---GTYEANQKVSSNRAYA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L GV + K+ G + + A P NRR++I Sbjct: 169 VENYLQSCGVKPYQFKKVEGVGYSQYNEAETPE--QNRRVEIF 209 >gi|163784521|ref|ZP_02179383.1| OmpA domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880207|gb|EDP73849.1| OmpA domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 75 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 I GHTD + + N LSL RA ++ + G S D + + G+ R + Sbjct: 2 IEGHTDNT---GSYKLNLDLSLKRALYIMKMFISCGFSPD-LLSVRGYGPSRPIADNSTP 57 Query: 327 -MNSANRRIDILVEDRQ 342 + NRR++ +++ ++ Sbjct: 58 KGRAKNRRVEFVIKTKE 74 >gi|99080684|ref|YP_612838.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99036964|gb|ABF63576.1| OmpA/MotB [Ruegeria sp. TM1040] Length = 1619 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVI-SIRGHTDASPFRNIARDNWRLSLDRAY 293 F + + VL++ + L + + I GHTD++ + N LS RA Sbjct: 467 FATGKADIREAGLGVLREAADALKARGAENYVFLIEGHTDST---GSDKINLPLSDARAK 523 Query: 294 SA-YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 S + +G++ +R+ + G+ + NRR++I Sbjct: 524 SVERYFVENAGIAPERLQTV-GYGPRIPLATNATEGGKQINRRVEI 568 >gi|170699332|ref|ZP_02890380.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170135762|gb|EDT04042.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 219 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ L K+ L + + + G+TDA+ N LS RA Sbjct: 117 FATDSAVLTSAATAALDKL---LNQQGDRHFARVEVDGYTDAT---GSDGHNQALSKRRA 170 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ D +G ++D + NRR++I ++ Sbjct: 171 DAVAGYLREHGLKAD-AFAATGHGEANPAASNDTVEGRARNRRVEISLQ 218 >gi|37679728|ref|NP_934337.1| outer membrane protein [Vibrio vulnificus YJ016] gi|37198473|dbj|BAC94308.1| outer membrane protein [Vibrio vulnificus YJ016] Length = 226 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ E L I ++G+ + A N LS RA Sbjct: 101 RVLFANDSDKINPVFRKQIKEMSEFLKLYPSTSIELQGYASRT---GNAEHNLDLSKRRA 157 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 + ++L+ G+++ R+ +I GF L + ++ NRR+ Sbjct: 158 NNVREMLIGYGIAQSRV-RIVGFGDSALANEGTDEVSHALNRRV 200 >gi|258405280|ref|YP_003198022.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797507|gb|ACV68444.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692] Length = 322 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 AD V+ T T + + D+ + M F + + L + +L + + Sbjct: 176 ADKEVETRTVYVTNTDTPLPMADKDDVGMIFFQFDKASIQDQYTDELDEYVALLRRNPQM 235 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + I GHTD + N LSL RA + + ++ +S +R+ + G+ ++ + Sbjct: 236 ELLIEGHTD---IIGSEKYNLDLSLQRAMAVHDYFVRHNISSERL-RTKGYGFNKPIAPN 291 Query: 325 -------DPM-NSANRRIDI 336 +P + NRR+++ Sbjct: 292 FTQNRKDNPEGRANNRRVEL 311 >gi|218675305|ref|ZP_03524974.1| hypothetical conserved membrane protein [Rhizobium etli GR56] Length = 206 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 6/104 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 F SS PE +LQK+ V+ I I GHTDA AR N LS RA Sbjct: 102 RVQFAFDSSAIAPEQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSTLRA 158 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + + +R+ + G P NRR++ Sbjct: 159 REVARFFTEDCHIPRERLEAV-GVGEQFPLDPQTPKADENRRVE 201 >gi|167614763|ref|ZP_02383398.1| unnamed protein product; Similar to putative exported protein [Burkholderia thailandensis Bt4] Length = 560 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F + P + + +LA+ + + I GH+D+ N +LS RA Sbjct: 443 LFATGQATFSPGAAQRELQHALRMILANPEQRVLIVGHSDS---AGSDAVNLQLSKARAR 499 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + GV + R + G + + NRR++IL+ Sbjct: 500 AIRDWFVDQGVLKTRFI-VQGAGDTHPVADNASPLGRAQNRRVEILLIP 547 >gi|34497346|ref|NP_901561.1| outer membrane protein [Chromobacterium violaceum ATCC 12472] gi|34103202|gb|AAQ59565.1| probable outer membrane protein [Chromobacterium violaceum ATCC 12472] Length = 223 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 11/147 (7%) Query: 196 AKKISSTLSGLVADNIVKGVLFETT-RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++ + + G+ T + I+I + FD +S P VL K Sbjct: 77 SQHMQKQKEAMEQATKGTGIGVSQTADNRLKINI---PSDASFDTNSYALKPSLKPVLDK 133 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L + ++I GHTD + I LS++RA + L GV +RI I Sbjct: 134 LATTLQQNPVTSVNIIGHTDNTGSDAINNP---LSVNRAKATQGYLASRGVDINRIG-ID 189 Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338 G + + NRR++I V Sbjct: 190 GRGSREPVADNGTVSGRAMNRRVEIYV 216 >gi|330447679|ref|ZP_08311327.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491870|dbj|GAA05824.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 508 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%) Query: 227 SIIDQRNTP-MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I + P +F S L++ E L H + I + GHT R N Sbjct: 388 EIGTLKTRPVIFSSGSDQLTANGKQQLRQTAESLTHYPKFRILVEGHT---GLRGDKALN 444 Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA---NR--RIDILV 338 +LS RA + L+ G RI I G + NR R++I + Sbjct: 445 EQLSAQRAKAVKHYLVNELGFEARRIHAI-GKGSKEPLERLSGESQRRYANRLMRVEIAL 503 Query: 339 ED 340 Sbjct: 504 LS 505 >gi|115359322|ref|YP_776460.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115284610|gb|ABI90126.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 224 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + ++ +F + P L K+ T +++ GHTD+ N Sbjct: 111 VEHVNLAGDALFATGLATLTPAARASLDKLLSEREDRTYTQVTVTGHTDSV---GNDAAN 167 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L G++ + +SG ++ ++NRR+DI ++ Sbjct: 168 LALSKRRAETVAGYLKAHGLNAQTV-SVSGRGSADPVASNATAEGRASNRRVDISLQR 224 >gi|169794817|ref|YP_001712610.1| putative Outer membrane protein precursor (OmpA-like) [Acinetobacter baumannii AYE] gi|213157857|ref|YP_002320655.1| outer membrane protein A [Acinetobacter baumannii AB0057] gi|215482363|ref|YP_002324545.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter baumannii AB307-0294] gi|301345435|ref|ZP_07226176.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter baumannii AB056] gi|301512590|ref|ZP_07237827.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter baumannii AB058] gi|301595016|ref|ZP_07240024.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter baumannii AB059] gi|169147744|emb|CAM85607.1| putative Outer membrane protein precursor (OmpA-like) [Acinetobacter baumannii AYE] gi|213057017|gb|ACJ41919.1| outer membrane protein A [Acinetobacter baumannii AB0057] gi|213988159|gb|ACJ58458.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter baumannii AB307-0294] Length = 353 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 343 Query: 342 Q 342 Q Sbjct: 344 Q 344 >gi|149190419|ref|ZP_01868691.1| outer membrane protein A [Vibrio shilonii AK1] gi|148835798|gb|EDL52763.1| outer membrane protein A [Vibrio shilonii AK1] Length = 343 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282 I + + ++ +F S E + L I L E ++ G+TD++ Sbjct: 220 ITTRLPEVHSSVLFAFDSEKI--ENVEALNPIVYRLTRYPETRATVYGYTDST---GPNE 274 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 N LS RA + Y+ L +GVS +++ +++G+ + +D NRR+ + +E+ Sbjct: 275 YNQSLSERRANAVYEYLKHAGVSTEQL-RVAGYGEDSPVVPNDTTEHRHMNRRVTVHIEE 333 >gi|15639612|ref|NP_219062.1| hypothetical protein TP0624 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025850|ref|YP_001933622.1| hypothetical protein TPASS_0624 [Treponema pallidum subsp. pallidum SS14] gi|3322920|gb|AAC65597.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018425|gb|ACD71043.1| hypothetical protein TPASS_0624 [Treponema pallidum subsp. pallidum SS14] gi|291059994|gb|ADD72729.1| OmpA family protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 476 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 16/141 (11%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-- 263 + D GV + + I++ D R F +S L + I L Sbjct: 345 FLTDERSPGVGVRSGINTLKITVYDVR----FVANSPEILASEKDRVDVIATALKKMGPY 400 Query: 264 EVISIRGHTDA--SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I GHT P A LS+ RA Q L + G+ RI+ +G + Sbjct: 401 TRFLIEGHTADLHRPQEEAA-----LSVARAQRMAQELSRRGIEMTRIT-TAGHGATKPI 454 Query: 322 IASDPMN--SANRRIDILVED 340 SD + NRR++I + Sbjct: 455 APSDTHANKAKNRRVEITILR 475 >gi|83941258|ref|ZP_00953720.1| OmpA family protein [Sulfitobacter sp. EE-36] gi|83847078|gb|EAP84953.1| OmpA family protein [Sulfitobacter sp. EE-36] Length = 191 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S P+ L + + + +IS GHTD+ R N +LSL+RA + Sbjct: 93 FFNTDSYRVHPQGRARLAEFFKTTGAVSYIIS--GHTDS---RASDAYNMKLSLNRANAV 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + +SG RI+ + G+ ++ + NRR++I+ Sbjct: 148 ASIAQQSG---ARIADVRGYGERMPAASNGTAGGMAKNRRVEII 188 >gi|222102518|ref|YP_002539557.1| OmpA family protein [Agrobacterium vitis S4] gi|221739119|gb|ACM39852.1| OmpA family protein [Agrobacterium vitis S4] Length = 332 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ E+ L ++ E L + + I GHTD+ N LS RA + Sbjct: 230 FETDSAALKAESDKTLAQMAEFLTQDVSRKVYIVGHTDS---SGALERNMNLSQARAAAV 286 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 + L G+ DR+ + G + A+D + NRR++++ Sbjct: 287 VKALTAKFGIDSDRL-QPKGIGPYAPAASNANDAGRAKNRRVEMV 330 >gi|91215766|ref|ZP_01252736.1| OmpA family protein [Psychroflexus torquis ATCC 700755] gi|91186232|gb|EAS72605.1| OmpA family protein [Psychroflexus torquis ATCC 700755] Length = 231 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 19/151 (12%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPLPETIV 250 + AK+I + G E TR G I++ D+ + F + S ++ + Sbjct: 81 MDKQAKEIEEEIPGA-----------EVTRVGEGINVTFDENSGVYFTTNKSNIEGKSEI 129 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L K+ + + I + GHTD++ N LS RA S L +G+S RI Sbjct: 130 SLLKLIGIFQKYPKTNIIVEGHTDST---GSDSYNMDLSKRRAQSVTDYLSNNGISSSRI 186 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILV 338 K + + + K + S NRR+++ + Sbjct: 187 -KTNWYGEEQPKFDNTSPEERSKNRRVELAI 216 >gi|115358236|ref|YP_775374.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115283524|gb|ABI89040.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 404 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +R L LA+ + L VA V+ + + + R +F + Sbjct: 251 ETRRALPLDALARNLEQRLRDEVAAGNVELIRAPGSDA------LTLRFGGLFAPGDAAV 304 Query: 245 LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301 P V+ G +A T + + G+ D++ R+ N LS RA Q+L+ Sbjct: 305 APWGASVVASAGREIAVLTGSATVHVAGYADSTSARSTRQASNQALSEARARHVAQILVS 364 Query: 302 SGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340 +GVS RIS + +G A + + NRR+++ + D Sbjct: 365 AGVSAPRISVEGNGEADSLADNGTAAGRARNRRVEVTITD 404 >gi|197337755|ref|YP_002158384.1| OmpA family protein [Vibrio fischeri MJ11] gi|197315007|gb|ACH64456.1| OmpA family protein [Vibrio fischeri MJ11] Length = 1600 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 30/225 (13%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 ++ + + ++ + + + L S ++ + +P S+E I +++ Sbjct: 541 VYGFNEAVKANDNADKAYAKLFETTQKYSLSTLSVSNDRLQEAAIPRDSEEAI--KEQQN 598 Query: 191 RLQDLAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + L+ LV + V + + + + MFD S P+ Sbjct: 599 AYDQAVDSMRAKLAQLVVKDQKHHVETVGFSEFQLRL------DATMFDFDSHEIQPDFS 652 Query: 250 VV---LQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 Q I E L + VI I GHT + + A N LS RA + ++ + Sbjct: 653 GASTPFQSIAEELKKLSGAPFVIMIIGHTCS--IGSEAY-NLELSKQRAVAVKNSIIDA- 708 Query: 304 VSEDR-------ISKISGFAHHRLKIASD----PMNSANRRIDIL 337 +S+++ + + G ++ NRR++I+ Sbjct: 709 LSDEKYKSIWSDLLVVKGEGESTPLPGNNNETEEERKLNRRVEIV 753 >gi|163866828|gb|ABY47584.1| outer membrane protein A [Acinetobacter baumannii] Length = 333 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328 >gi|126461330|ref|YP_001042444.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126102994|gb|ABN75672.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 213 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE L++ + + + GHTD N RL L RA + Sbjct: 69 FPFDSAALTPEAQATLRRQADWIRQFPEVRFRVYGHTD---LVGSEAYNKRLGLRRAKAV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + + R I NRR Sbjct: 126 VAYLASQGISPARLEALVSYGETRPVIPVAAPEERNRR 163 >gi|241764514|ref|ZP_04762534.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] gi|241366050|gb|EER60654.1| OmpA/MotB domain protein [Acidovorax delafieldii 2AN] Length = 212 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ N +LS+ R+ + Sbjct: 104 FFDFDKSVLKPEGKAKLDDLVSKVKDINLEVIIAVGHTDSV---GTDAYNQKLSVRRSEA 160 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 161 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTKEGRAKNRRVEIEV 205 >gi|327189144|gb|EGE56328.1| hypothetical protein RHECNPAF_7150015 [Rhizobium etli CNPAF512] Length = 429 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 8/172 (4%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 LPP + + ++ + ++ + L + + + V I++ I R Sbjct: 264 ATLPPNGVVRSARIALPPKVVMSSDRLRNFLEPEIREGL---VTVSEDPQQIVVII---R 317 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 + MFD +S + +L +IG L + + + GHTDA P +++A + Sbjct: 318 ASGMFDSASPEVKKMFLPLLLRIGRSLNGESGSVLLTGHTDAIPVQSLAFPSNDSLSLAR 377 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 SA ++KS +++ + G ++ + NRRI I++ Q Sbjct: 378 ASAAAEIIKSMMNDPGRVREEGRGSGEPVASNHTPEGRARNRRIQIIITKTQ 429 >gi|70728526|ref|YP_258275.1| OmpA family protein [Pseudomonas fluorescens Pf-5] gi|68342825|gb|AAY90431.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 262 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 15/237 (6%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG---KDLCKSTDLEKS 166 S N + + L+ N + ++K KD K D Sbjct: 21 STPPNANLENARTNFSALQANPQASKVAALETKDAADWMDKADKAYLNKDDEKKVDQLAY 80 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 + + + K K A+ I + + + + T G L+ Sbjct: 81 LTNQRVEVAKETIALRTAEAKLKDAGDQRARAILDARDAQIKQ-LQDSLNAKQTDRGTLV 139 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 + D +F + S +V + K+ + L + + + + G+TD++ N Sbjct: 140 TFGD----VLFATNKSDLKSSGLVNINKLAQFLQQNPDRKVIVEGYTDST---GSDSYNQ 192 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 LS RA S L++ G+ RI G+ + + NRR+++ + + Sbjct: 193 SLSERRAGSVQMALIRMGIDPARIVS-QGYGKEYPVADNGSVSGRAMNRRVEVTISN 248 >gi|302189107|ref|ZP_07265780.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 229 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F SS L + L + I I Sbjct: 95 ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV + + + G + ++ Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVN 209 Query: 327 MNSANRRIDILVEDRQG 343 + NRR+++ ++ G Sbjct: 210 GRAQNRRVEVNLKPIPG 226 >gi|256828886|ref|YP_003157614.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578062|gb|ACU89198.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 375 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 79/270 (29%), Gaps = 30/270 (11%) Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 +S K+ I T V L+ + R I E + Sbjct: 100 GASIAKVPTLIGSDPTPLGVALQALEPTLQGASGRNAVIIVSDGRENAGEDSLKVAAALA 159 Query: 152 EKGKDLCKSTDLEKSINKEEN------YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 EK + S+N + P + +Q + + ++G Sbjct: 160 EKYNVCFHTVSFADSVNGNQPLLDSITALKPCGVGVSAAQLADDAAMQKFVRDVFYDVAG 219 Query: 206 ------LVADNIVKGVLFETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIV 250 L D + I+ +D P+ FD S P Sbjct: 220 GVDPCSLDDDGDGVNNCVDKCPDTIMGLAVDADGCPIPEVIRLKVNFDFDKSDIKPAYHQ 279 Query: 251 VLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 L + V+ I GHTD+ + N +LS RA + L+ + G+ Sbjct: 280 ELADFAAYMKQQQSFTVVEIAGHTDS---KGADEYNQKLSERRAKAVRDYLVTNFGLDGS 336 Query: 308 RISKISGFAHHRLKIASDPM--NSANRRID 335 + G+ + ++D + NRR++ Sbjct: 337 -LFSARGYGESKPVASNDTEEGRAENRRME 365 >gi|323140666|ref|ZP_08075588.1| hypothetical protein HMPREF9443_00346 [Phascolarctobacterium sp. YIT 12067] gi|322414851|gb|EFY05648.1| hypothetical protein HMPREF9443_00346 [Phascolarctobacterium sp. YIT 12067] Length = 244 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 43/203 (21%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 LS + + K D + + + L+ + + +G++ E +T ++ + D+ F Sbjct: 34 LSWQILTYTNMKSDFADKSYERVALLNEIHKELNNRGIMVEINKTHDVLRLHDKALK--F 91 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV--------------ISIRGHTDA-SP-FRNIA 281 + P +Q+I EVL I I GHTD+ P FR+ Sbjct: 92 LPGRAKPEA-GEENVQQISEVLYTVLNKDRGDKPKYKELVETIFIEGHTDSDLPSFRSDY 150 Query: 282 RDNWRLSLDRAYSAYQVLMK----------------SGVSEDRISKISGFAHHRLKIASD 325 DNW LS RA ++++ +G I SG+A R + ++ Sbjct: 151 PDNWMLSTARAVRTWEMMSAFRPDGATQTLGEIKNHNGFP---IFSCSGYADTRRIVENE 207 Query: 326 P---MNSANRRIDI--LVEDRQG 343 S NRRIDI ++ +G Sbjct: 208 TSKEEKSINRRIDIRFVMVPPKG 230 >gi|83950067|ref|ZP_00958800.1| OmpA family protein [Roseovarius nubinhibens ISM] gi|83837966|gb|EAP77262.1| OmpA family protein [Roseovarius nubinhibens ISM] Length = 220 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ L++ + + GHTD N L + RA + Sbjct: 75 FAFNSAQLDAGARDTLREQAHWIRQFPEVRFRVYGHTDKVGSHGY---NKALGMARARAV 131 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ ++ F + I ++ NRR Sbjct: 132 VAYLASQGISTSRLEAVASFGETQPLIVTEGRERRNRR 169 >gi|71064914|ref|YP_263641.1| outer membrane protein [Psychrobacter arcticus 273-4] gi|71037899|gb|AAZ18207.1| probable outer membrane protein [Psychrobacter arcticus 273-4] Length = 394 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 10/116 (8%) Query: 226 ISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 + I D+ FD S + + K+ E + + GH AS A Sbjct: 261 VDITDELKMELRVFFDNDKSAIKTQYKPEIAKVAEKMREYPNSTARVEGH--ASKTGPSA 318 Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 R N RLS RA + +L G++ +R+S + G+ + + ++ + NRR+ Sbjct: 319 RYNQRLSEARAVAVKSMLTNEFGIAPNRLSTV-GYGYDQPIADNNTEEGRAMNRRV 373 >gi|27382457|ref|NP_773986.1| hypothetical protein blr7346 [Bradyrhizobium japonicum USDA 110] gi|27355628|dbj|BAC52611.1| blr7346 [Bradyrhizobium japonicum USDA 110] Length = 316 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ PE+ L++I ++L + I GHTD+ N LS RA + Sbjct: 214 FDTDKAVLKPESRPTLEQIAKLLTSQPQLNVFIVGHTDSQ---GAYEYNLDLSKRRAEAV 270 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L KS + +G A+D + NRR++++ Sbjct: 271 AAELAKSFRIAQARLRTAGVGLLAPVGSNATDAGRALNRRVELV 314 >gi|325068010|ref|ZP_08126683.1| OmpA/MotB domain protein [Actinomyces oris K20] Length = 411 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ LQ + L ++I GHTD N LS RA + Sbjct: 117 FASDSADLASGAETQLQTVVGQLGQYPDGGTLTIVGHTDDVQ---DDAYNQTLSEKRANA 173 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 L + + + +SG + KI D +ANRR++I + G Sbjct: 174 VKTRLEQLTKLDKWQTSVSGKGESQPKINDTTDQARAANRRVEITLTPTSG 224 >gi|171911103|ref|ZP_02926573.1| outer membrane protein [Verrucomicrobium spinosum DSM 4136] Length = 479 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ P L + +L S + I GHTDA + + N LS RA + Sbjct: 371 FEYDQAVLHPRAQAQLNIVASILKASPSKNLKIGGHTDA---KGSDQYNVALSQRRAAAV 427 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVE 339 Q + GV ++ + GF + +P S NRR +IL++ Sbjct: 428 KQYFLDQGVPPLQVETV-GFGKALPLSPNANPDGSDNPEGRSRNRRAEILLD 478 >gi|157960752|ref|YP_001500786.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845752|gb|ABV86251.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 356 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 9/110 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD SS L + E L I +I+G+TD++ A N LS RA Sbjct: 244 TSLFDFDSSELTN--SDSLTAVIERLNQVPTAIANIKGYTDST---GAAAYNQALSERRA 298 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 + L+ +G+ ++I + GF + +D NRR+ I ++ Sbjct: 299 QAVADDLIAAGIKPEQIE-VHGFGEQFPVMKNDTSEHRHENRRVLIHIQS 347 >gi|53713187|ref|YP_099179.1| OmpA family outer membrane protein [Bacteroides fragilis YCH46] gi|60681448|ref|YP_211592.1| OmpA family membrane protein [Bacteroides fragilis NCTC 9343] gi|253566855|ref|ZP_04844307.1| OmpA family outer membrane protein [Bacteroides sp. 3_2_5] gi|265763283|ref|ZP_06091851.1| OmpA family outer membrane protein [Bacteroides sp. 2_1_16] gi|52216052|dbj|BAD48645.1| OmpA family outer membrane protein [Bacteroides fragilis YCH46] gi|60492882|emb|CAH07657.1| putative outer membrane protein OmpA-family [Bacteroides fragilis NCTC 9343] gi|251944418|gb|EES84907.1| OmpA family outer membrane protein [Bacteroides sp. 3_2_5] gi|263255891|gb|EEZ27237.1| OmpA family outer membrane protein [Bacteroides sp. 2_1_16] gi|301162908|emb|CBW22455.1| putative outer membrane protein OmpA-family [Bacteroides fragilis 638R] Length = 224 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + L + +L ++I GHTD N ++S +RAY+ Sbjct: 112 LFAFNSSALSAASKQSLAEFANILKEDPTVDVAIIGHTDKV---GSYEANQKVSANRAYA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L GV + K+ G + + + P NRR++I Sbjct: 169 VENYLQACGVKPYQFKKVEGVGYSQYNESETPE--QNRRVEIF 209 >gi|319779310|ref|YP_004130223.1| Outer membrane protein A precursor [Taylorella equigenitalis MCE9] gi|317109334|gb|ADU92080.1| Outer membrane protein A precursor [Taylorella equigenitalis MCE9] Length = 188 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE VL +I E + T I GHTD+ A N +LS RA + Sbjct: 82 FFDFDKSSLKPEGRTVLDQIAEQVKLLTLESLITVGHTDS--IGTNAY-NQKLSERRAAT 138 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L+ GV ++I SG + + + NRR+DI Sbjct: 139 VKNYLIDKGVPAEQIIA-SGRGETQPIADNRTREGRAQNRRVDI 181 >gi|107100572|ref|ZP_01364490.1| hypothetical protein PaerPA_01001597 [Pseudomonas aeruginosa PACS2] gi|313106086|ref|ZP_07792343.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|310878845|gb|EFQ37439.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 158 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P++ L KI L + + + GHTD + + N +LS RA Sbjct: 52 KVLFGNNLDRLNPDSRNTLTKIAHALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 108 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S V ++G+ I + G + + S NRR+ I+V Sbjct: 109 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 155 >gi|114778503|ref|ZP_01453347.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1] gi|114551228|gb|EAU53787.1| OmpA/MotB [Mariprofundus ferrooxydans PV-1] Length = 325 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + +L + + K + T+ G I++ FD S I ++ Sbjct: 181 RTMAELNVVEVEPMQQEMVFIKAKDLANGITQQG-HIALHQIH----FDTDSDIIKADSR 235 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSED 307 + +I +L ++ + I + GHTD + N LS RA + L G+ Sbjct: 236 PAIDQIALMLKNNPDLKIILVGHTDNQ---GDLQYNMDLSQRRAKAVMNSLESDYGIKRA 292 Query: 308 RISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 R+ G+ S + NRR++I+ Sbjct: 293 RLGAAGIGYLAPIASNRSAEGRAENRRVEII 323 >gi|77462452|ref|YP_351956.1| OmpA/MotB family outer membrane protein [Rhodobacter sphaeroides 2.4.1] gi|221638315|ref|YP_002524577.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|332560336|ref|ZP_08414658.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N] gi|77386870|gb|ABA78055.1| outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides 2.4.1] gi|221159096|gb|ACM00076.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] gi|332278048|gb|EGJ23363.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N] Length = 213 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE L++ + + + GHTD N RL L RA + Sbjct: 69 FPFDSAALTPEAQATLRRQADWIRQFPEVRFRVYGHTD---LVGSEAYNKRLGLRRAKAV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + + R I NRR Sbjct: 126 VAYLASQGISPARLEALVSYGETRPVIPVAAPEERNRR 163 >gi|320325748|gb|EFW81809.1| ompA family protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327336|gb|EFW83350.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881603|gb|EGH15752.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 229 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GV + + + G + ++ + Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 214 NRRVEVNLKPIPG 226 >gi|312959441|ref|ZP_07773958.1| OmpA/MotB [Pseudomonas fluorescens WH6] gi|311286158|gb|EFQ64722.1| OmpA/MotB [Pseudomonas fluorescens WH6] Length = 231 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ L I L + + + GHTD+ N +LS RA+S Sbjct: 127 FQFDSANLTTADKTTLDTIAARLKQEAPSAQLRVSGHTDSV---GADAYNQKLSQKRAHS 183 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + L+ GV + G + + + NRR I + Sbjct: 184 VTEYLISRGVPRSSFVSVVGAGESQPVADNKTAEGRALNRRTQIQI 229 >gi|167585789|ref|ZP_02378177.1| ompA family protein [Burkholderia ubonensis Bu] Length = 166 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + S+ G+TD++ + N LS +RA S Sbjct: 61 FATNQYAITPAFTPLLNDLATTLNQNPQVTASVVGYTDSTGSAGL---NQTLSQNRAQSV 117 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 118 VNALTQRGVAGGRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAAQ 165 >gi|163866830|gb|ABY47585.1| outer membrane protein A [Acinetobacter baumannii] Length = 341 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328 >gi|129307156|gb|ABO30516.1| outer membrane protein A [Acinetobacter baumannii] Length = 337 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328 >gi|114048539|ref|YP_739089.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113889981|gb|ABI44032.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 372 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + F S++ E ++++ L + E + I GH N L Sbjct: 253 QEDVGSIQFANDSAVVKKEYYKDIERLANYLNKNPEFTVEIAGHASNV---GKPDYNMTL 309 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQ 342 S RA + ++L++ G+S+ R++ +G+ + +A D + ANRRI+ +V + Sbjct: 310 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGDTKEAHAANRRIEAIVTTTE 366 >gi|127511841|ref|YP_001093038.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126637136|gb|ABO22779.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 224 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++ TR G I I++ N F S+ VL + V E ++++ G Sbjct: 94 LQSTGVSVTRNGDNI-ILNMPNEVTFGVDQSVLSSRAKNVLDSVALVAKEYDETMLNVMG 152 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD+ N RLS RA LM + RIS + G R + Sbjct: 153 FTDS---SGSESYNLRLSQVRAAEVANYLMSREIKSQRISSV-GMGESRPIADNSTQQGR 208 Query: 329 SANRRIDILV 338 + NRR++I++ Sbjct: 209 AQNRRVEIVL 218 >gi|227538856|ref|ZP_03968905.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241365|gb|EEI91380.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 19/152 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ A +I +T++G + GI I+ +FD + S Sbjct: 80 KKMDKQAAEIENTVAGA---------EVIKSDEGI---IVKFDEGILFDFNKSDLKASAK 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + K+ L + I + GHTD N ++S RA + + G++ R Sbjct: 128 TNISKLVATLNKEPDTKILVIGHTDNV---GSLAANQKVSEARAAAVKTYAVSQGLNGGR 184 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I+ G + ++D + NRR++I++ Sbjct: 185 IN-TEGKNYSEPLASNDTDAGRAENRRVEIVI 215 >gi|221068229|ref|ZP_03544334.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] gi|220713252|gb|EED68620.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] Length = 215 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ P L + + + I GHTD+ + A N +LS+ RA + Sbjct: 107 FFDFDKSVLKPAGKAKLDDLTGKIKDINLEVIIAVGHTDS--IGSDAY-NQKLSVRRAEA 163 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L+ G+ + R+ G + A+ + NRR++I V + Sbjct: 164 VKAYLVSKGIEKSRVY-TEGKGKKQPVASNATAAGRAQNRRVEIEVVGTKA 213 >gi|238752234|ref|ZP_04613714.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia rohdei ATCC 43380] gi|238709502|gb|EEQ01740.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia rohdei ATCC 43380] Length = 153 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD ++ IG L + + + GHTD++ N +LS R Sbjct: 47 NKVLFDTDIRELNSTGKQTVESIGRALHNVGINHLRVDGHTDST---GEDGYNQQLSYQR 103 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L SG+ RI + G + + NRR+ I+V Sbjct: 104 AAAVADSLSASGIPRARID-VRGRGELEPAADNKTAQGRAENRRVAIIV 151 >gi|91786221|ref|YP_547173.1| Type I secretion outer membrane protein TolC [Polaromonas sp. JS666] gi|91695446|gb|ABE42275.1| Type I secretion outer membrane protein, TolC [Polaromonas sp. JS666] Length = 607 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 8/112 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD S L + + L + I GHTD+ N RLSL RA S Sbjct: 498 LFDFDKSTIKAGGTGKLDALVDRLKGVNVDVVIAVGHTDSV---GTDAYNQRLSLARADS 554 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI-LVEDRQG 343 L+ GV RI + G + A+ + NRR+DI +VE R Sbjct: 555 VKAYLVSKGVDRQRI-RTEGRGESQPVADNATAEGRAKNRRVDIEVVEARPA 605 >gi|119773835|ref|YP_926575.1| outer membrane protein and related peptidoglycan-associated (LipO)protein [Shewanella amazonensis SB2B] gi|119766335|gb|ABL98905.1| outer membrane protein and related peptidoglycan-associated (LipO)protein [Shewanella amazonensis SB2B] Length = 484 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FD S LPE+ VL+ + L + + GHTD N LS R Sbjct: 374 DGLLFDYDSDRMLPESKPVLEVLASYLKQNPALNFYVVGHTDDQ---GDKAYNLSLSERR 430 Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 A + + L + ++ G A++ S NRR+++++ Sbjct: 431 AAAVVKALGADYQIKPAQLEA-HGMGEFSPVASNANEAGQSQNRRVELVLRS 481 >gi|170702768|ref|ZP_02893624.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170132317|gb|EDT00789.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 222 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + ++ +F + P L K+ T +++ GHTD+ N Sbjct: 109 VEHVNLAGDALFATGLATLTPAARASLDKLLSEREDRTYTQVTVTGHTDSV---GNDAAN 165 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L G+ + +SG ++ ++NRR+DI ++ Sbjct: 166 LALSKRRAETVAGYLKAHGLKAQTV-SVSGRGSADPVASNATAEGRASNRRVDISLQR 222 >gi|85858730|ref|YP_460932.1| outer membrane porin protein [Syntrophus aciditrophicus SB] gi|85721821|gb|ABC76764.1| outer membrane porin protein [Syntrophus aciditrophicus SB] Length = 435 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F P+ +QK+ + + + +V + GHTD++ + A N +LS +RA + Sbjct: 332 LFASDKYNIEPKYDSEIQKVADYMKANPDVTAVVAGHTDST--HSNAY-NKKLSQNRANA 388 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 L++ G+ RI + G+ + + NRR+ ++ Sbjct: 389 VKTALVEKYGIDASRIEAV-GYGEDKPIATNKTKAGRQKNRRVVVM 433 >gi|78060486|ref|YP_367061.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77965036|gb|ABB06417.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 220 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ L + L + + + G+TDA+ N LS RA Sbjct: 118 FATDSAVLTSAATAALDTL---LNQQGDKHFSRVEVDGYTDAT---GSDAHNQVLSKRRA 171 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ + + +G +++ + NRR++I ++ Sbjct: 172 DAVAGYLREHGLKAESFAA-TGHGETNPAASNETAEGRARNRRVEISLQ 219 >gi|293611044|ref|ZP_06693343.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826696|gb|EFF85062.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 357 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + + N RLSL RA Sbjct: 238 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 294 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 295 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 353 Query: 342 Q 342 Q Sbjct: 354 Q 354 >gi|262369227|ref|ZP_06062555.1| outer membrane protein A [Acinetobacter johnsonii SH046] gi|262315295|gb|EEY96334.1| outer membrane protein A [Acinetobacter johnsonii SH046] Length = 348 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + R + N RLSL RA Sbjct: 235 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIEGHTDNTGPRAL---NERLSLARA 291 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + ++ + NRR+ Sbjct: 292 NSVKSSLVNEYNVDPARL-STQGFAWDQPIADNNTKEGRAMNRRV 335 >gi|260768688|ref|ZP_05877622.1| outer membrane protein [Vibrio furnissii CIP 102972] gi|260616718|gb|EEX41903.1| outer membrane protein [Vibrio furnissii CIP 102972] Length = 229 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 14/212 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C + +++ G+ S + + S + +++ + Sbjct: 22 SGCAATQRQNATTGETETNSATKGALLGALAGAAVGLASGDDAKERRQRALIGAAGGAAV 81 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQ 253 G D + E +G+ + + + + F +S L+ Sbjct: 82 GGGVGYYFDQQEAALRQELLNSGVQVERVGENQLVLRMQNGIGFQTNSYQLDSSIHNTLR 141 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + ++L + + I GHTD++ N LS RA S L+ GV+ R Sbjct: 142 GVAKILVEYPDTSLVIDGHTDST---GSDTTNQILSERRAESVRSFLLSQGVAAGRAIA- 197 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G + + NRR++I + + Sbjct: 198 RGNGERYPLCTNSTADGRSCNRRVEIQILPLK 229 >gi|84515818|ref|ZP_01003179.1| OmpA domain protein [Loktanella vestfoldensis SKA53] gi|84510260|gb|EAQ06716.1| OmpA domain protein [Loktanella vestfoldensis SKA53] Length = 637 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARD 283 +I++ D R FD S+ V+ I EVL I + G+TD+ Sbjct: 488 IIAMTDGRKIT-FDPGSASITAAAQPVIDDIAEVLRLCGDLRIRVAGYTDSQ---GREAM 543 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 N RLS DRA + L V + G A A++ ANRRI+ + Sbjct: 544 NLRLSQDRADAVLTALRARRVPVSTFEAVGYGIADPIADNATEAGREANRRIEFSL 599 >gi|120599047|ref|YP_963621.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|146292882|ref|YP_001183306.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|120559140|gb|ABM25067.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] gi|145564572|gb|ABP75507.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 288 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 84/277 (30%), Gaps = 13/277 (4%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F+ + + + P+ + + + N+ + + + + Sbjct: 14 FSRQLLSYSLLLTTVAACSSAPKMAEGISDIRTELNTLQANNELAILAPAAISQAEEAVR 73 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + N Q S+H R +S E + + Sbjct: 74 AAEQPVKNEQLSQHLVFVADRKVNIALAQAQSRFAEDQQKVLAKNRDDARLDARTTEANQ 133 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + LA+ ++ D + L + G ++++ D +FD + Sbjct: 134 AHQDARLARADAADARQESDDAQAQLALLNARESERGWVVTLGD----VLFDTGKANLKS 189 Query: 247 ETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 T L + L + I G+TD+ N LS RA S L GV Sbjct: 190 STSQHLTNLAAFLGKYPQRGAIIEGYTDSV---GTEEYNLGLSERRADSVSNFLQAQGVQ 246 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 R+S G ++ + NRR+++++ + Sbjct: 247 SSRLSS-QGKGESFPVANNESASGRQQNRRVEVIITN 282 >gi|330951040|gb|EGH51300.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 229 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F SS L + L + I I Sbjct: 95 ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV + + + G + ++ Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVN 209 Query: 327 MNSANRRIDILVEDRQG 343 + NRR+++ ++ G Sbjct: 210 GRAQNRRVEVNLKPIPG 226 >gi|264677568|ref|YP_003277474.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|262208080|gb|ACY32178.1| OmpA/MotB [Comamonas testosteroni CNB-2] Length = 214 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ P L + + + I GHTD+ + A N +LS+ RA + Sbjct: 106 FFDFDKSVLKPAGKAKLDDLTGKIKDINLEVIIAVGHTDS--IGSDAY-NQKLSVRRAEA 162 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L+ G+ + R+ G + + + NRR++I V + Sbjct: 163 VKAYLVSKGIEKSRVY-TEGKGKKQPVADNKTAAGRAQNRRVEIEVVGTKA 212 >gi|226358108|ref|YP_002787847.1| OmpA family protein [Deinococcus deserti VCD115] gi|226319751|gb|ACO47745.1| putative OmpA family protein [Deinococcus deserti VCD115] Length = 200 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRA 292 MF +++ PE L VL + + I GHT S R W LS RA Sbjct: 91 MFVGDTAVLTPEGQSALVAFARVLRAQGKHWKRVRIEGHTQTSRPNTPER--WGLSAGRA 148 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + + +K GVS +R+ ++ + N R++ILVE Q Sbjct: 149 SAVAEAFYLKGGVSPNRL-AVAARGGQTPYDGRK-FDVRNERVEILVEYAQ 197 >gi|167835831|ref|ZP_02462714.1| ompA family protein [Burkholderia thailandensis MSMB43] Length = 215 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + ++ S+ G+TD++ A N LS +RA S Sbjct: 108 FATNQYAVTPAFTPLLNDLATTLNQNPQITASVVGYTDST---GSAAYNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 L + V+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALSQRSVAASRLSA-QGMGASNPIADNATEAGRAQNRRVEIYLRAPQA 213 >gi|193213735|ref|YP_001994934.1| OmpA/MotB domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087212|gb|ACF12487.1| OmpA/MotB domain protein [Chloroherpeton thalassium ATCC 35110] Length = 264 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + + +L ++ E L + I GHTD+ + +R N+ LS+ RA + Sbjct: 160 FPVNRTELPYSAHDMLDELAEKLLAKRLSVEIVGHTDS---KGSSRFNYNLSVQRAAAVK 216 Query: 297 QVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338 + L++ GV + G + + + NRRI++ V Sbjct: 217 KYLIRRGVPAS-WLRAYGVGSNEPITRNKTKEGREKNRRIEVKV 259 >gi|258404319|ref|YP_003197061.1| OmpA/MotB domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257796546|gb|ACV67483.1| OmpA/MotB domain protein [Desulfohalobium retbaense DSM 5692] Length = 428 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 14/130 (10%) Query: 220 TRTGILISI------IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 T G+ + +D + +FD S+ + L +L + E I GHT Sbjct: 303 TPQGVQVDEKGCPVPMDVSISILFDIDKSVVRGDYHDELADATAMLNKNPEANAVIEGHT 362 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNS 329 D++ + A N LS RA S L+ + + R+ + + + Sbjct: 363 DST--ASAAY-NMELSKKRAQSVRDYLVDTFDIDPQRL-STKAYGESQPTATNTTRFGRK 418 Query: 330 ANRRIDILVE 339 NRR+ I ++ Sbjct: 419 LNRRVVITLQ 428 >gi|153832936|ref|ZP_01985603.1| putative protein F-related protein [Vibrio harveyi HY01] gi|148870859|gb|EDL69758.1| putative protein F-related protein [Vibrio harveyi HY01] Length = 209 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 75/193 (38%), Gaps = 14/193 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--I 211 D+ ++ + + + P + + + + G+++ + Sbjct: 19 NSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFL 78 Query: 212 VKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268 + + T +G ++I + +Q + F S+ ++ +Q +G LA + + I Sbjct: 79 NRHQIAHETISGEHLMIRLKEQVH---FQTGSARLSAQSQDWIQSLGHYLAGRTDVDVVI 135 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GH D++ + LS RA + L+ + + R+ GF + + ++ + Sbjct: 136 DGHADSTGAASFNDS---LSEKRAREVEKQLLATSLPRQRVFS-RGFGEYVPQCSNATAS 191 Query: 329 SA--NRRIDILVE 339 NRR+++++ Sbjct: 192 GKACNRRVELMLM 204 >gi|66044258|ref|YP_234099.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63254965|gb|AAY36061.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|330945118|gb|EGH46848.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] gi|330969323|gb|EGH69389.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 229 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F SS L + L + I I Sbjct: 95 ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV + + + G + ++ Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASNADVN 209 Query: 327 MNSANRRIDILVEDRQG 343 + NRR+++ ++ G Sbjct: 210 GRAQNRRVEVNLKPIPG 226 >gi|239906204|ref|YP_002952943.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] gi|239796068|dbj|BAH75057.1| chemotaxis protein MotB [Desulfovibrio magneticus RS-1] Length = 250 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 77/185 (41%), Gaps = 9/185 (4%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVK 213 K L + E + + +++ A+ R ++ +A + ++ Sbjct: 56 KQLEQYFKDEPKPAQGALFSPDATERQRAAALNRDDAMRYTIAMRFKKIITEDPFLKNSS 115 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD 273 G+ + G+L+ + +N +F S+ + ++ ++ +V+ + IRGH D Sbjct: 116 GISSDDV--GVLLRL---QNGMLFAPGSAELTEQAKKLMAEVVDVMKTYNVFLIIRGHAD 170 Query: 274 AS-PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPM-NSA 330 A+ + NW LS RA +A + ++ G + + + R + ++P +A Sbjct: 171 AAEAAKGHFASNWELSGARAAAAARAVIAGGGIQASRVRAVAYGDSRPLMPETNPEAAAA 230 Query: 331 NRRID 335 NRR++ Sbjct: 231 NRRVE 235 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 14/118 (11%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 + SWK+ YADF+T +MAFFL+MWIIN T K +EQYF D Sbjct: 19 PKAHGSSWKVAYADFVTAMMAFFLLMWIINMVPPATLKQLEQYFK--------------D 64 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHC 143 E P + + + N D + + + E+ S+ S+ Sbjct: 65 EPKPAQGALFSPDATERQRAAALNRDDAMRYTIAMRFKKIITEDPFLKNSSGISSDDV 122 >gi|254440083|ref|ZP_05053577.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198255529|gb|EDY79843.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 720 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F SS +I + + V+ + + I GHTD+ N LS DRA Sbjct: 609 FLSSSVRLDATSIRTINALAAVILPCVAADLTLDIGGHTDS---SGDEPTNKALSQDRAN 665 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L+ GV + ++ GF + ++ +ANRR DI Sbjct: 666 AVRAALIARGVPDVAMTA-FGFGQTQPIADNETPEGRAANRRTDI 709 >gi|156973571|ref|YP_001444478.1| hypothetical protein VIBHAR_01273 [Vibrio harveyi ATCC BAA-1116] gi|156525165|gb|ABU70251.1| hypothetical protein VIBHAR_01273 [Vibrio harveyi ATCC BAA-1116] Length = 318 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T F +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 205 GTGSFALNSTTLKPESAAKLDDLVAFLNEYPQANVDVIGYTDT---SGPAAYNQKVSEKR 261 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A S L++ G+ DRI G + +++ NRR++++V Sbjct: 262 AESVAHALIEKGIDADRIHA-RGEGENNPIASNETREGREQNRRVEVVV 309 >gi|126731561|ref|ZP_01747367.1| OmpA/MotB [Sagittula stellata E-37] gi|126708097|gb|EBA07157.1| OmpA/MotB [Sagittula stellata E-37] Length = 220 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F +S PE + L + + L S + GHTD A N LS RA Sbjct: 114 LFAYNSDDLTPEAMGKLSSLADALRDPRLSDARLVFIGHTDGV---GSAAYNMDLSRRRA 170 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + + + + G+ RI + G RLK + DP + NRR+ +++ Sbjct: 171 EAVARFVQGTMGLPPSRI-RAEGVGFSRLKNSFDPAAAQNRRVQLVLVP 218 >gi|257463423|ref|ZP_05627818.1| Outer membrane porin F [Fusobacterium sp. D12] gi|317060987|ref|ZP_07925472.1| outer membrane porin F [Fusobacterium sp. D12] gi|313686663|gb|EFS23498.1| outer membrane porin F [Fusobacterium sp. D12] Length = 193 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 15/157 (9%) Query: 193 QDLAKKISSTLSGLVADNIVKGV--LFETTRTGILIS------IIDQRNTPMFDKSSSIP 244 +DL+ + + + D K + + + G+ I I+ +FD Sbjct: 38 RDLSTEGNQNFAIEDIDTAKKPLEDIIVFNQDGVTIRREGNNLILSMPELILFDFDKYEV 97 Query: 245 LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 L+ + L +++ I I G+TD F N LS++RA + L+ G Sbjct: 98 KDGIKPSLRTLANALGANSDIKIKIDGYTD---FIGSEGYNLELSVNRAKAIKSYLVNHG 154 Query: 304 VSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 E+ I I G+ A++ + NRR++ ++ Sbjct: 155 AIENNI-SIEGYGKQNPVASNATESGRARNRRVEFII 190 >gi|167897282|ref|ZP_02484684.1| hypothetical protein Bpse7_26327 [Burkholderia pseudomallei 7894] Length = 481 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 305 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 364 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 365 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 417 >gi|254467364|ref|ZP_05080775.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206688272|gb|EDZ48754.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 209 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ VL + + + GHTDA N L L RA +A Sbjct: 66 FDFDSAQLDQTARAVLDQQAHWIRQFPEVRFRVFGHTDAV---GSDAYNRALGLRRARAA 122 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ + + I + NRR Sbjct: 123 VNYLVSRGISRSRLEAVISHGETQPLIPTPERERRNRR 160 >gi|167913946|ref|ZP_02501037.1| hypothetical protein Bpse112_25907 [Burkholderia pseudomallei 112] Length = 483 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 307 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 366 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 367 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 419 >gi|171057646|ref|YP_001789995.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170775091|gb|ACB33230.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 243 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD + P+ L + + + I GHTD+ N +L ++RA + Sbjct: 134 FFDTGKFVLKPDAASKLDDLVSKVKDINLEVIIAVGHTDSD---GSDAYNQKLGVNRAEA 190 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + L+ GV ++R+ G + + + NRR++I V Sbjct: 191 VKKYLVSKGVEQNRVY-TEGKGEKQPVADNGTKEGKAKNRRVEIEV 235 >gi|124267424|ref|YP_001021428.1| putative signal peptide protein [Methylibium petroleiphilum PM1] gi|124260199|gb|ABM95193.1| putative signal peptide protein [Methylibium petroleiphilum PM1] Length = 219 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD + PE L + +A + I GHTD+ N +LSL R+ + Sbjct: 111 FFDFDKATLKPEAKSKLDDLASKIAGLNLEVVIAVGHTDSV---GSDAYNQKLSLRRSEA 167 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L G+ ++RI G + + + NRR +I V Sbjct: 168 VKAYLESKGIEKNRIY-TEGKGEKQPVADNKTADGRAKNRRTEIEV 212 >gi|288941479|ref|YP_003443719.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288896851|gb|ADC62687.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 680 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 99/332 (29%), Gaps = 40/332 (12%) Query: 19 KKVAIDDTPNNLG-SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 + ++D + W+I A + +L LV W I ++ K I G++ Sbjct: 381 RHGSVDSRRHGRRLGWEIT-AMVIGILSGIGLVGWYIQSSS---LKPIASPIETQGQDTT 436 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNS 137 + E+ P + + + + G + + + Sbjct: 437 EKAARSAAERLVPSVPVTEQTPETPPFDVLISLAQEPSGPEADAVTVEESVIEEAPGTVA 496 Query: 138 QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK 197 S N+ + ++E + + + E E E++ + L L+ Sbjct: 497 GDSPLQTNAASSETESVPEAAATAEPETEAPSESVPAPDRPGLERLESG-----LAALSI 551 Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ + ++ + + F S +L + Sbjct: 552 EVERLAPNHIRADLSRLIQ--------------------FRDGSVALDESARTLLARFAG 591 Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 +L + I HTD +N LS RA +L G+ RI+ G Sbjct: 592 LLKEDERVRLHIVTHTDTQ---GATTNNQVLSERRAADIALILRLEGIGASRITH-EGKG 647 Query: 317 HHRLKIASDPMNS----ANRRIDI-LVEDRQG 343 K + NRRI+I L+E + Sbjct: 648 MSEPKFTREEERRLGPWINRRIEIDLIESDEA 679 >gi|254419256|ref|ZP_05032980.1| Rickettsia 17 kDa surface antigen family [Brevundimonas sp. BAL3] gi|196185433|gb|EDX80409.1| Rickettsia 17 kDa surface antigen family [Brevundimonas sp. BAL3] Length = 224 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S P + VL + VL I + GHTD++ N LS RA S Sbjct: 119 FATNQSSIDPRFLPVLDDVARVLQEYDRSTIDVIGHTDST---GGDAINQPLSERRAASV 175 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L++ GV +R+ ++G + ++ + NRR++IL+ Sbjct: 176 ASELVRRGVIAERLY-VAGNSSRNPVASNATPEGKAQNRRVEILIRP 221 >gi|167722659|ref|ZP_02405895.1| hypothetical protein BpseD_26829 [Burkholderia pseudomallei DM98] Length = 480 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 304 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 363 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 364 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 416 >gi|149919402|ref|ZP_01907883.1| OmpA domain protein [Plesiocystis pacifica SIR-1] gi|149819708|gb|EDM79133.1| OmpA domain protein [Plesiocystis pacifica SIR-1] Length = 182 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279 G I I F S+ L ++ +L + EV+ E ++ I GHT Sbjct: 58 EGDHIII---DGKIHFAHDSAEILEDSFEILDDVAEVMNAHPELPMLDIIGHTSTE---G 111 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI- 336 + N LS RA + L GV R++ G +++ NRR++ Sbjct: 112 SDKHNMELSTARAKAVADYLAGHGVDASRVTS-EGKGETEPIADESTEEGKRQNRRVEFK 170 Query: 337 LVEDRQG 343 +++ + Sbjct: 171 IIKPEEA 177 >gi|323497295|ref|ZP_08102314.1| OmpA family protein [Vibrio sinaloensis DSM 21326] gi|323317652|gb|EGA70644.1| OmpA family protein [Vibrio sinaloensis DSM 21326] Length = 205 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 11/131 (8%) Query: 211 IVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + GV +E I++ + D F+ SS +P++ L +GE L+ I I Sbjct: 76 LKNGVDYEVLPGNHIMVKLKDTIK---FNTGSSQVMPDSAYWLDMMGEYLSTQPGIDIVI 132 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GH D++ + LS+ RA + Q L+++ V+ D I G+ ++ M Sbjct: 133 DGHADSTGAPSFNDS---LSMKRAKAVKQQLVRNNVAMDSIF-TRGYGEFVPACSNASMA 188 Query: 329 SA--NRRIDIL 337 NRR+++L Sbjct: 189 GKACNRRVEVL 199 >gi|315181920|gb|ADT88833.1| outer membrane protein OmpA [Vibrio furnissii NCTC 11218] Length = 316 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS L+ + L + I I GHTD++ N +LS R Sbjct: 210 DALSFDSSS--LNATQQQALRTLAATLNKQPQAQILIIGHTDST---GSDAYNTKLSTRR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A +A VLM++ V+E RI K+ G R + + NRR+++ + Sbjct: 265 AQAAADVLMENQVAEHRI-KVFGEGQTRPIDTNTTPAGRAHNRRVEVQI 312 >gi|327539245|gb|EGF25868.1| OmpA/MotB domain protein [Rhodopirellula baltica WH47] Length = 282 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 94/259 (36%), Gaps = 14/259 (5%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 QNP + N + ++ N++ Q N +Q + + Sbjct: 27 SQNPYLAGGGTSVWQPPPSTTAVNGIQAQVAELNRRVQLLDDNNRQLTTQLAQSEQQSQ- 85 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KISSTLS 204 +L + + + E ++ + + + +++ A + ++ L+ Sbjct: 86 ----VYRDELNLVRKQLSDTTQQYESARIAAQDAQTQARSFQASAQMRGGATIRANTNLN 141 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262 + + G+ E + + + + +F + + P +L L Sbjct: 142 QMAGRLNLGGLKVEQDGEVLRVVLPSDQ---LFAQGTGQLQPSAGAILDPTAAQLRSVFP 198 Query: 263 TEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS-GFAHHR 319 + I I G+TD +P + A +L+ + + L + SG+ E ++ ++ G + R Sbjct: 199 RQRIGIEGYTDNAPMYGGAAGSAHQLTSAQTGAVLDWLTRRSGMPEQQLFTVAQGSNNPR 258 Query: 320 LKIASDPMNSANRRIDILV 338 + +ANRRI++++ Sbjct: 259 QDNTTPAGRAANRRIELVI 277 >gi|237799776|ref|ZP_04588237.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022631|gb|EGI02688.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F SS L + L + I I Sbjct: 95 ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV + + + G + ++ Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQTHL-SVRGAGPDQPIASNADVN 209 Query: 327 MNSANRRIDILVEDRQG 343 + NRR+++ ++ G Sbjct: 210 GRAQNRRVEVNLKPIPG 226 >gi|124005444|ref|ZP_01690285.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123989266|gb|EAY28844.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 300 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLP-ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ + L ++ L + I GHTD + A N ++S RAYS Sbjct: 195 FESGSTELHDARSEEELMRLVSFLKKHPKLKGEIAGHTDNT---GRAAANLQISTQRAYS 251 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-NRRIDILVE 339 Y+ L K+GV ++ G+ R K ++P+N NRRI+ + Sbjct: 252 VYKYLTKNGVKPAQLI-YRGYGATRPKFPNNNPVNRRKNRRIEFKIL 297 >gi|37704624|gb|AAR01584.1| OprF [Pseudomonas sp. MFY70] gi|37704664|gb|AAR01604.1| OprF [Pseudomonas sp. MFY162] Length = 298 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 216 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322 QVL+K GV+ R++ + G+ R Sbjct: 273 KQVLVKDGVAPSRVTAV-GYGESRPVA 298 >gi|119385186|ref|YP_916242.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans PD1222] gi|119374953|gb|ABL70546.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222] Length = 197 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P+ L+++ + S + I GHTDA + N LS RA Sbjct: 96 FAFDSASIAPDQRPALERMCSAMRQSDVGLFRIVGHTDA---KGSDSYNETLSKLRAEEV 152 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L++ G++ R+ + G L +DP + NRR++ Sbjct: 153 RRWLVQDCGITASRLEAL-GMGKRFLANPADPAAAENRRVE 192 >gi|117925243|ref|YP_865860.1| OmpA/MotB domain-containing protein [Magnetococcus sp. MC-1] gi|117608999|gb|ABK44454.1| OmpA/MotB domain protein [Magnetococcus sp. MC-1] Length = 257 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 15/177 (8%) Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 E+ +P + + L L +K+ + L +V + + T + G ++ I Sbjct: 61 EQINAIPTGNTIIAPEFASEMVLVQLREKVENVLGPMVDNGEAE---MYTDQDGFVMQI- 116 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST----EVISIRGHTDASPFRNIA-RDN 284 D T F + L +I +L I I HTD +P N Sbjct: 117 DSDTT--FVPGTLQLSDTFQAKLTEICNILTTHPDTKNNKIRIIAHTDTTPPPGGMLPTN 174 Query: 285 WRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 W LS +A + + + GV R+ + K ++D S NRRI+IL+ Sbjct: 175 WALSAAQAAAVVGYMSTQGGVDPVRLE-VRAKGEFAPKESNDTADGRSKNRRIEILI 230 >gi|331002828|ref|ZP_08326342.1| hypothetical protein HMPREF0491_01204 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413317|gb|EGG92685.1| hypothetical protein HMPREF0491_01204 [Lachnospiraceae oral taxon 107 str. F0167] Length = 409 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 15/283 (5%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 ++ + + T G + + + + +++ N + + QY+ Sbjct: 129 AGQYSDGNQTVQTEGDGSGQYNDSEKGITIQRDADGSGQYLDSNKGIILQVDADGSGQYK 188 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 I ++ + KNS S + + + ++ Sbjct: 189 DDRYGINLQVDANGTGMYKNSQNDVSIAVDEEEVIYKAGDVVIEIKSDGSGSYENSATGL 248 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNI---VKGVLFETTRTGILIS----IIDQRNTPMFD 238 + KI + AD + K L + I +I +FD Sbjct: 249 IIENDGQGKAVIKIDDDEKEVKADPLDFTYKLPLLNSVPAVPAIEANSIMITMDAGVLFD 308 Query: 239 KSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 E+ L + +VL + I GHTD+ N LS +RA S + Sbjct: 309 VDKYDLRNESKETLNNLAKVLKEANISAFEIDGHTDSDA---DDAYNQTLSENRANSVKE 365 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ GV+ + +G+ R ++D NRR++I++ Sbjct: 366 YLVSVGVTAN--ITTNGYGESRPVASNDTPEGKQQNRRVEIII 406 >gi|313674920|ref|YP_004052916.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312941618|gb|ADR20808.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 639 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+++S+ P+ L K+ + L E + I GHTD+ N LS +RA + Sbjct: 531 FEENSAKLRPDMYSDLDKVVDFLLDYPEFKLKISGHTDS---SGDELRNKSLSQERADAI 587 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVEDRQ 342 +++ + E+R+ G+ + + + +D NRR++ + + Sbjct: 588 RDYIIILHPIEEERVVA-EGYGNSQPVVEEEITDDDRRLNRRVEFEIYRPK 637 >gi|167741629|ref|ZP_02414403.1| hypothetical protein Bpse14_26418 [Burkholderia pseudomallei 14] Length = 472 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 296 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 355 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 356 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 408 >gi|284038953|ref|YP_003388883.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283818246|gb|ADB40084.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 285 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%) Query: 237 FDKSSSI--PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S+ P+ +++ L H TE ++I GHTD++ N +LS RA Sbjct: 180 FPTGSTEHIVTPDNEQFVREAITYLYNHPTERLTITGHTDST---GTEAFNLKLSRLRAM 236 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 L+K G + R ++ + ++ ANRR+ +LV+ R Sbjct: 237 VVRDKLIKQG-ASKRWIQVIAMGNKLPIAPNNLPEGREANRRVTLLVKKR 285 Score = 42.9 bits (99), Expect = 0.068, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%) Query: 235 PMFDKSSSIPLPETIV-VLQKIGEVLAHSTEVI-SIRG-HTDASPFRNIARDNWRLSLDR 291 +F K+ S L + L + + ++ G HT A + N L + R Sbjct: 55 SLFHKAESTLRQSDKPSALDTLAAYLINHPRRLLTVVGYHTPAEN-KLTLMPN--LGVMR 111 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 A Q L+ +GV ED++ +I G A L D ++ Sbjct: 112 ADVVRQYLVSAGVPEDQV-QIQGQASELLNFIKDSTSA 148 >gi|171319658|ref|ZP_02908751.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MEX-5] gi|171095111|gb|EDT40119.1| type IV / VI secretion system protein, DotU family [Burkholderia ambifaria MEX-5] Length = 404 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 A +R L LA+ + L VA V+ + + T + R MF + Sbjct: 251 APRRALPLDALARNLEQRLRDEVAAGNVELIRAPGSDT------LTLRFGGMFAPGDAAV 304 Query: 245 LPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK 301 P V+ G +A T + + G+ D++ R+ N LS RA Q+L+ Sbjct: 305 APWGASVVASAGREIAVLTNSATVHVAGYADSTSARSTRQASNQALSEARARHVAQILVS 364 Query: 302 SGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVED 340 + VS IS + +G A + + NRR+++ + D Sbjct: 365 ADVSAPHISVEGNGDADSLADNGTAAGRARNRRVEVTITD 404 >gi|150003007|ref|YP_001297751.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482] gi|319642207|ref|ZP_07996867.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A] gi|149931431|gb|ABR38129.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482] gi|317386193|gb|EFV67112.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A] Length = 399 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205 + + KG D + + + F P + I+A+ + LA++I Sbjct: 214 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 272 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 + + T + I + F S++ + V LQ+I +++ + Sbjct: 273 -LKAQLANQPTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 331 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + G+ D+ A N +LS DRA + L+K GV+++ + ISG Sbjct: 332 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 388 Query: 325 DPMNSANRRIDI 336 + NRR+ I Sbjct: 389 ----AFNRRVII 396 >gi|21666310|gb|AAM73654.1|AF390104_1 outer membrane protein HMP [Acinetobacter baumannii] Length = 346 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 228 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 284 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 285 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 328 >gi|86144391|ref|ZP_01062723.1| Outer membrane protein [Vibrio sp. MED222] gi|85837290|gb|EAQ55402.1| Outer membrane protein [Vibrio sp. MED222] Length = 353 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287 + + MF+ +S+ E L + EVL +++ GHTD++ A N + Sbjct: 225 TESFSQGMFETNSTELSSEGKSALMPLVEVLQAHPQSSVNVVGHTDST---GAAEYNMMI 281 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 S RA + + + G+ DRI+ SG ++ + NRR+D Sbjct: 282 SKKRAAAVAAYIEEQGIEADRITA-SGEGEENPVASNATAEGRAQNRRVD 330 >gi|84391232|ref|ZP_00991563.1| outer membrane protein [Vibrio splendidus 12B01] gi|84376521|gb|EAP93399.1| outer membrane protein [Vibrio splendidus 12B01] Length = 222 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 14/209 (6%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 + + +++ G+ S I + + +++ + Sbjct: 18 QATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGG 77 Query: 204 SGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 G D + E +G+ + ++ N F S L+ + Sbjct: 78 IGYYFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFGSGSYALESSIHNTLRGVA 137 Query: 257 EVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 +L + + I GHTD++ N LS RA S L+ V+ R G Sbjct: 138 RILVEYPDTSLVIDGHTDST---GSESSNQILSERRAESVRAFLISQDVAAGRAIA-RGN 193 Query: 316 AHHRLKIASDP--MNSANRRIDILVEDRQ 342 ++ + NRR++I + + Sbjct: 194 GERYPLCDNNTSQGRACNRRVEIQILPLK 222 >gi|237707997|ref|ZP_04538478.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA] gi|265754217|ref|ZP_06089406.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA] gi|229457983|gb|EEO63704.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA] gi|263234926|gb|EEZ20481.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA] Length = 395 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205 + + KG D + + + F P + I+A+ + LA++I Sbjct: 210 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 268 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 + + T + I + F S++ + V LQ+I +++ + Sbjct: 269 -LKAQLANQPTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 327 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + G+ D+ A N +LS DRA + L+K GV+++ + ISG Sbjct: 328 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 384 Query: 325 DPMNSANRRIDI 336 + NRR+ I Sbjct: 385 ----AFNRRVII 392 >gi|212690547|ref|ZP_03298675.1| hypothetical protein BACDOR_00029 [Bacteroides dorei DSM 17855] gi|254883655|ref|ZP_05256365.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA] gi|294775642|ref|ZP_06741150.1| OmpA family protein [Bacteroides vulgatus PC510] gi|212666896|gb|EEB27468.1| hypothetical protein BACDOR_00029 [Bacteroides dorei DSM 17855] gi|254836448|gb|EET16757.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA] gi|294450486|gb|EFG18978.1| OmpA family protein [Bacteroides vulgatus PC510] Length = 401 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205 + + KG D + + + F P + I+A+ + LA++I Sbjct: 216 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 274 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 + + T + I + F S++ + V LQ+I +++ + Sbjct: 275 -LKAQLANQPTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 333 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + G+ D+ A N +LS DRA + L+K GV+++ + ISG Sbjct: 334 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 390 Query: 325 DPMNSANRRIDI 336 + NRR+ I Sbjct: 391 ----AFNRRVII 398 >gi|167576586|ref|ZP_02369460.1| unnamed protein product; Similar to putative exported protein [Burkholderia thailandensis TXDOH] Length = 541 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F + P + + +LA+ + + I GH+D+ N +LS RA Sbjct: 424 LFATGQATFSPGAVQRELQHALRMILANPEQRVLIVGHSDS---AGSDAVNLQLSKARAR 480 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + + GV + R + G + + NRR++IL+ Sbjct: 481 AIRDWFVDQGVLKTRFI-VQGAGDTHPVADNASPLGRALNRRVEILLIP 528 >gi|296390513|ref|ZP_06879988.1| hypothetical protein PaerPAb_20266 [Pseudomonas aeruginosa PAb1] Length = 158 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P++ L KI L + + + GHTD + + N +LS RA Sbjct: 52 KVLFGNNLDRLNPDSRNTLTKIAHALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 108 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S V ++G+ I + G + + S NRR+ I+V Sbjct: 109 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 155 >gi|93005202|ref|YP_579639.1| OmpA/MotB [Psychrobacter cryohalolentis K5] gi|92392880|gb|ABE74155.1| OmpA/MotB [Psychrobacter cryohalolentis K5] Length = 392 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 10/116 (8%) Query: 226 ISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 + I D+ FD S + + K+ E + + GH AS A Sbjct: 259 VDITDELKMELRVFFDNDKSAIKTQYKPEIAKVAEKMREYPNSTARVEGH--ASKTGPSA 316 Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 R N RLS RA + +L G++ +R+S + G+ + + ++ + NRR+ Sbjct: 317 RYNQRLSEARAVAVKSMLTNEFGIAPNRLSTV-GYGYDQPIADNNTEEGRAMNRRV 371 >gi|262038680|ref|ZP_06012041.1| outer membrane protein [Leptotrichia goodfellowii F0264] gi|261747295|gb|EEY34773.1| outer membrane protein [Leptotrichia goodfellowii F0264] Length = 147 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 ++++ + +FD S P+ +LQ + E + + ++I GHTD+ + N Sbjct: 32 VTVVLDERSLLFDFDKSNVKPQYYGILQNLKEYIEVNDYDVTIIGHTDS---KGTNEYNM 88 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +L + RA S +++ GV RI + +D + NRRI+ + + Sbjct: 89 KLGMRRAESVKAKMIEFGVPASRIVGVESRGEEEPVATNDTAEGRALNRRIEFKLVRK 146 >gi|51598427|ref|YP_072615.1| outer membrane protein [Borrelia garinii PBi] gi|51572998|gb|AAU07023.1| outer membrane protein [Borrelia garinii PBi] Length = 389 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F S L + L I ++ Sbjct: 253 IETEVENYIQEKKIKDIGVEKNNKGINLS-FDIE----FYPDSFQILQKEYKKLDLIAKL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V ++D+I G+ Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMY---ELSEKRARTIGNYLIKMKVKNKDQIL-FKGWG 363 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388 >gi|260889292|ref|ZP_05900555.1| outer membrane protein, porin F [Leptotrichia hofstadii F0254] gi|260860703|gb|EEX75203.1| outer membrane protein, porin F [Leptotrichia hofstadii F0254] Length = 269 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 17/262 (6%) Query: 76 LMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 M R + +++ + T N V QK ++ ++ Sbjct: 14 AMAVPTVSEKMTTSDMRKDIIRANVADIQQDTANEVPTLDTPNPQKPVATADNPDLITVA 73 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 +Q + R S + K+ + P++ + + + Sbjct: 74 LTQDGTGTRIVNNRSSGTYQTSGKNAVNLSQQKTQAVQNNQPVTAASAQSEAEQTT-ATV 132 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 ++ ++ I K + + F K+S+ E VL+ I Sbjct: 133 SEIQEKPINNPQKVQISKSEIITLRSNDLN-----------FQKNSTDLKKEAYPVLRDI 181 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 + + + ++SI G+TD S + N RLSL RA L++ G+S+DR+ + G Sbjct: 182 KDYIEKNDFLVSIIGYTDKSGVSSY---NKRLSLRRAEKVSLKLIELGLSKDRVVDLIGR 238 Query: 316 AHHRLKIASDPMNSA--NRRID 335 +D NRR++ Sbjct: 239 GESNPIKTNDTEEGREGNRRVE 260 >gi|254483240|ref|ZP_05096472.1| OmpA family protein [marine gamma proteobacterium HTCC2148] gi|214036463|gb|EEB77138.1| OmpA family protein [marine gamma proteobacterium HTCC2148] Length = 329 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 211 IVKGVLFETTRTGILISIID---QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--- 264 I K V G+ +I + + F+ S + I L + G L Sbjct: 194 IRKVVESTEAEEGLNDAIGEVSFDVQSINFEFGSDELAADGIRQLDEFGAALVSPELEQL 253 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + GHTD N LS RA + L + + ++ G + + Sbjct: 254 KLRVAGHTDDQ---GEESYNLDLSQRRAKAVALYLESNYEVDSGRLEVVGMGEEKPLVPD 310 Query: 325 D--PMNSANRRIDIL 337 + NRR++++ Sbjct: 311 ASLEARAKNRRVEMV 325 >gi|237725269|ref|ZP_04555750.1| major outer membrane protein OmpA [Bacteroides sp. D4] gi|229436535|gb|EEO46612.1| major outer membrane protein OmpA [Bacteroides dorei 5_1_36/D4] Length = 395 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 13/192 (6%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ---DLAKKISSTLSG 205 + + KG D + + + F P + I+A+ + LA++I Sbjct: 210 KTTSKGPDFMAGATVGITYKFPQRGFKPAPDVDAIMALTSSQMDAINTALAQQIEQNRQ- 268 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 + + T + I + F S++ + V LQ+I +++ + Sbjct: 269 -LKAQLANQSTEVVTEQVTVNQIAPAPQSVFFQIGSAVLPTNSTVNLQQIADLVKDNPGL 327 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + G+ D+ A N +LS DRA + L+K GV+++ + ISG Sbjct: 328 KLKVTGYADSD--TGSAAWNKQLSEDRANNVANELVKLGVNKNNLI-ISGMGGVNTLTPP 384 Query: 325 DPMNSANRRIDI 336 + NRR+ I Sbjct: 385 ----AFNRRVII 392 >gi|71733414|ref|YP_273324.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627857|ref|ZP_06460811.1| ompA family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648335|ref|ZP_06479678.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|71553967|gb|AAZ33178.1| ompA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|330868443|gb|EGH03152.1| ompA family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330988549|gb|EGH86652.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008919|gb|EGH88975.1| ompA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIVGYT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GV + + + G + ++ + Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 214 NRRVEVNLKPIPG 226 >gi|242277549|ref|YP_002989678.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] gi|242120443|gb|ACS78139.1| OmpA/MotB domain protein [Desulfovibrio salexigens DSM 2638] Length = 172 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 14/125 (11%) Query: 228 IIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNI 280 I D F +S+ + V+ +G L + + GHTD+ Sbjct: 36 ITDPGGRVFLKIEFKVNSAKISEKANPVVDSLGVALTSGPGQSMQVRLVGHTDS---AGK 92 Query: 281 ARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 + N LSL RA S L + + RI + G + +++ + NRR++++ Sbjct: 93 SEYNRSLSLKRAESVRNYLAVHFNIDPARIE-VQGMGEDQPIASNENAQGRAQNRRVEVI 151 Query: 338 VEDRQ 342 ++ Sbjct: 152 NISKK 156 >gi|319426588|gb|ADV54662.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 288 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 87/249 (34%), Gaps = 21/249 (8%) Query: 95 QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG 154 Q K +L+I + + + + Q + ++L ++ ++++ + + + +R +E Sbjct: 52 QAKNELAILAPAAISQAEEAVRAAEQPVKNEQLSQHLVFVADRKVNIALAQAQSRFAEDQ 111 Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + + + ++ ++ Q+ A + Sbjct: 112 QKVLAKNRDDARLDARTTEANQAHQDARLARADAADARQE----------SDDAQAQLAL 161 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + G ++++ D +FD + T L + L + I G+TD Sbjct: 162 LNARESERGWVVTLGD----VLFDTGKANLKSSTSQHLTNLATFLGKYPQRGAIIEGYTD 217 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 + N LS RA S L GV R+S G ++ + N Sbjct: 218 SV---GTEEYNLGLSERRADSVSNFLQAQGVQSSRLSS-QGKGESFPVANNESASGRQQN 273 Query: 332 RRIDILVED 340 RR+++++ + Sbjct: 274 RRVEVIITN 282 >gi|116049050|ref|YP_792148.1| hypothetical protein PA14_49900 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584271|gb|ABJ10286.1| probable outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 168 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P++ L KI L + + + GHTD + + N +LS RA Sbjct: 62 KVLFGNNLDRLNPDSRNTLTKIAHALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 118 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S V ++G+ I + G + + S NRR+ I+V Sbjct: 119 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 165 >gi|95928801|ref|ZP_01311547.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] gi|95135146|gb|EAT16799.1| OmpA/MotB [Desulfuromonas acetoxidans DSM 684] Length = 415 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P+ I + + I I GHTD+ N +LS RA + Sbjct: 311 FDTNKADIRPQHIQDMTNAAAFINKYPGEKILISGHTDSD---GSEAYNQQLSQRRADAV 367 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 L+++ + GF + + NRR+++ + + Sbjct: 368 KAYLIQNYAIDGTNLTAKGFGESQPIADNTTAAGKQKNRRVELSLFN 414 >gi|294651148|ref|ZP_06728483.1| OmpA/MotB domain protein [Acinetobacter haemolyticus ATCC 19194] gi|292822980|gb|EFF81848.1| OmpA/MotB domain protein [Acinetobacter haemolyticus ATCC 19194] Length = 255 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+I +L ++ L + I GHTD+ A N LS +RA + Sbjct: 154 FESGSAILTETGKRILDEMAVALNKVGGKQVKIIGHTDS---SGDASRNVILSKERAVAV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L+ ++ DR+ G + + NRRI+ V Sbjct: 211 QDYLVSKNIATDRL-STEGKGSSEPIADNATADGRRKNRRIEFEVL 255 >gi|315180390|gb|ADT87304.1| lipoprotein, hypothetical [Vibrio furnissii NCTC 11218] Length = 222 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 14/212 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C + +++ G+ S + + S + +++ + Sbjct: 15 SGCAATQRQNATTGETETNSATKGALLGALAGAAVGLASGDDAKERRQRALIGAAGGAAV 74 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQ 253 G D + E +G+ + + + + F +S L+ Sbjct: 75 GGGVGYYFDQQEAALRQELLNSGVQVERVGENQLVLRMQNGIGFQTNSYQLDSSIHNTLR 134 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + ++L + + I GHTD++ N LS RA S L+ GV+ R Sbjct: 135 GVAKILVEYPDTSLVIDGHTDST---GSDTTNQILSERRAESVRSFLLSQGVAAGRAIA- 190 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G + + NRR++I + + Sbjct: 191 RGNGERYPLCTNSTADGRSCNRRVEIQILPLK 222 >gi|307943350|ref|ZP_07658694.1| OmpA/MotB domain-containing protein [Roseibium sp. TrichSKD4] gi|307772980|gb|EFO32197.1| OmpA/MotB domain-containing protein [Roseibium sp. TrichSKD4] Length = 192 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL---ISIIDQRNTPMFD 238 + K + +L K + DN + + + + I FD Sbjct: 37 QGAQAKVEVSADELRKAAFDNIKKYPGDNAAEVLPLALKLNQLRQFNVEIT-------FD 89 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 S PE+ + I + L H+ + GHTDA + N +LS RA + Sbjct: 90 FDSDRIRPESYETVGVIADAL-HTPYLWGAKFFVVGHTDA---KGDREYNIKLSQRRADA 145 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + L+ + V DR+ + G +L+ +P NRR+ ++ Sbjct: 146 IREALITTFRVPADRLEAV-GLGEEQLRDPENPDAEVNRRVQLI 188 >gi|262281137|ref|ZP_06058919.1| outer membrane protein A [Acinetobacter calcoaceticus RUH2202] gi|262257368|gb|EEY76104.1| outer membrane protein A [Acinetobacter calcoaceticus RUH2202] Length = 352 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + + N RLSL RA Sbjct: 233 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 289 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 290 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 348 Query: 342 Q 342 Q Sbjct: 349 Q 349 >gi|167848689|ref|ZP_02474197.1| hypothetical protein BpseB_25726 [Burkholderia pseudomallei B7210] Length = 486 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 310 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 369 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 370 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 422 >gi|226952046|ref|ZP_03822510.1| OmpA/MotB domain protein [Acinetobacter sp. ATCC 27244] gi|226837203|gb|EEH69586.1| OmpA/MotB domain protein [Acinetobacter sp. ATCC 27244] Length = 255 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+I +L ++ L + I GHTD+ A N LS +RA + Sbjct: 154 FESGSAILTEAGKRILDEMAVALNKVGGKQVKIIGHTDS---SGDASRNVILSKERAVAV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L+ ++ DR+ G + + NRRI+ V Sbjct: 211 QDYLVSKNIATDRL-STEGKGSSEPIADNATADGRRKNRRIEFEVL 255 >gi|206564258|ref|YP_002235021.1| putative outer membrane protein A precursor [Burkholderia cenocepacia J2315] gi|198040298|emb|CAR56283.1| putative outer membrane protein A precursor [Burkholderia cenocepacia J2315] Length = 220 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 ++ ++ +F + P L ++ A T +++ G TD+ Sbjct: 106 VVERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSV---GSDDY 162 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339 N LS RA S L G+ D ++ G A A+ ++NRR++I ++ Sbjct: 163 NLALSKRRAESVAAYLKAHGLKTDSMTVSGRGKADPVASNATPEGRASNRRVEIRLQ 219 >gi|158314079|ref|YP_001506587.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec] gi|158109484|gb|ABW11681.1| OmpA/MotB domain protein [Frankia sp. EAN1pec] Length = 407 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F ++ T L K+ L + + GHTD++ R + N LS+DRA A Sbjct: 305 FPVGDTVLGASTRSGLDKVARALLPGDLTVIVGGHTDSTGPRAL---NQALSIDRARVAR 361 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + L+ GV +RI + +GF + AS +ANRR+D+ Sbjct: 362 EYLVMRGVPAERI-RAAGFGPDQPIADNASTSGRAANRRVDV 402 >gi|325855004|ref|ZP_08171720.1| OmpA family protein [Prevotella denticola CRIS 18C-A] gi|327313291|ref|YP_004328728.1| OmpA family protein [Prevotella denticola F0289] gi|325483982|gb|EGC86922.1| OmpA family protein [Prevotella denticola CRIS 18C-A] gi|326945391|gb|AEA21276.1| OmpA family protein [Prevotella denticola F0289] Length = 225 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 12/148 (8%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + +A++ + TL D + E + + + +F + S Sbjct: 74 MDKVARETAQTLPNARVDKVTDANGLECVK-------VTFDSGILFPLNGSKLSASAKND 126 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K ++ ++ ++I+G+TDA N LS RA + L GV+ +I Sbjct: 127 LTKFAALMKRNSNCDVAIQGYTDA---SGNDNINLPLSQRRAEAVSSYLKGRGVTGRQIR 183 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILV 338 + GF I + ++ ANRR+++ + Sbjct: 184 SVQGFGSSNP-IENKTISQANRRVEVYL 210 >gi|312887507|ref|ZP_07747103.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311299995|gb|EFQ77068.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 630 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 FD + E+ L K+ L + I + GHTD I N LS +R Sbjct: 524 KNIFFDTNKYDIKDESKTELAKLIAFLNDNPSVKIEVSGHTDNVGVDAI---NQTLSQNR 580 Query: 292 AYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRID--ILV 338 A + YQ L+ +S +R + K G A ++ NRR + I++ Sbjct: 581 AKAVYQYLIGQHISPNRLVYKGYGKAQPIAPNTNEEGRKLNRRTEFKIII 630 >gi|317491882|ref|ZP_07950317.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920316|gb|EFV41640.1| OmpA family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 163 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 14/141 (9%) Query: 205 GLVADNI--VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 GL A+ I +K F T G + +F + S PE+ ++K+G+ LA Sbjct: 29 GLTAEQIAVLKEQGFHQTDEG---WMFGLSEKVLFGNNKSNLTPESTETVKKMGKTLAQI 85 Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRL 320 + G TD N +LSL RA + L + G+ R+ G Sbjct: 86 NILHARLDGFTDNY---GDESYNQQLSLKRANTVADALSQGGIP--RMNLTTRGMGESHP 140 Query: 321 KIASDP--MNSANRRIDILVE 339 ++ S NRR+ I++E Sbjct: 141 IASNSTKQGRSENRRVAIVIE 161 >gi|239995434|ref|ZP_04715958.1| sodium-type flagellar protein MotY [Alteromonas macleodii ATCC 27126] Length = 118 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ + L IGE L E+ + + G+TD+ +N +LS+ RA Sbjct: 18 STELTKYSQKRLTMIGEYLKEDGELELVLLDGYTDSY---GGRYNNEQLSIRRANEVKSY 74 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 L GV EDRI +++G R +D + NRR+ Sbjct: 75 LTTLGVPEDRI-QLTGHGEKRHIAPNDTRESRAQNRRV 111 >gi|90020235|ref|YP_526062.1| OmpA domain-containing protein [Saccharophagus degradans 2-40] gi|89949835|gb|ABD79850.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 381 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S++ ++++ + + +S+ G+TD R A N +LS RA + Sbjct: 270 FDNNSAVVKESYYAEVKRVADFMNQYANTQVSVEGYTDD---RGSAAYNKQLSQKRADAV 326 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 L+ + R++ +GF +D +ANRR+ Sbjct: 327 KATLVSQFNIDAARVTA-TGFGEINPIDTNDTAAGRAANRRV 367 >gi|74095537|emb|CAJ27303.1| conserved hypothetical protein [Cronobacter sakazakii] Length = 536 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S+ P LQ + ++ I GH+D + N +LS+ RA Sbjct: 419 SLFSSGSARLRPHGPAALQPLFTLVNQHPENRFLIIGHSDNT---GNPEVNQQLSVSRAI 475 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + + L+K+ I G +D NRR++ + Sbjct: 476 AVREWLVKTTKRPATQFDIYGLGASEPVAGNDNETGRELNRRVEAIALP 524 >gi|167827195|ref|ZP_02458666.1| hypothetical protein Bpseu9_26190 [Burkholderia pseudomallei 9] Length = 489 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 313 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 372 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 373 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 425 >gi|83854735|ref|ZP_00948265.1| OmpA family protein [Sulfitobacter sp. NAS-14.1] gi|83842578|gb|EAP81745.1| OmpA family protein [Sulfitobacter sp. NAS-14.1] Length = 176 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S P+ L + + + +IS GHTD+ R N +LSL+RA + Sbjct: 78 FFNTDSYRVHPQGRARLAEFFKTTGAVSYIIS--GHTDS---RASDAYNMKLSLNRANAV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + +SG RI+ + G+ ++ + NRR++I+ Sbjct: 133 ASIAQQSG---ARIADVRGYGERMPAASNGTAGGMAKNRRVEII 173 >gi|330961787|gb|EGH62047.1| ompA family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIVGYT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GV + + + G + ++ + Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 214 NRRVEVNLKPIPG 226 >gi|283955082|ref|ZP_06372585.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 414] gi|283793449|gb|EFC32215.1| fibronectin-binding protein [Campylobacter jejuni subsp. jejuni 414] Length = 319 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNV---GSRAYNQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV ++RI I G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKNRIKTI-GYGQDNPRSSNDTKEGRADNRRVD 313 >gi|255319913|ref|ZP_05361114.1| inner membrane lipoprotein YiaD [Acinetobacter radioresistens SK82] gi|262379192|ref|ZP_06072348.1| type VI secretion system OmpA/MotB [Acinetobacter radioresistens SH164] gi|255303046|gb|EET82262.1| inner membrane lipoprotein YiaD [Acinetobacter radioresistens SK82] gi|262298649|gb|EEY86562.1| type VI secretion system OmpA/MotB [Acinetobacter radioresistens SH164] Length = 209 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 16/154 (10%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + KK+ ++G GV G + I+ FD + S P Sbjct: 69 LDNKEKKLRQQMAGT-------GVEVNRNPDGSVGLIM--PGNITFDTNKSTIKPNFYTT 119 Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + L + I + G+TD++ N LS RA + L GV RI+ Sbjct: 120 LNKVAQTLTEDNKSAILVTGYTDST---GNDSINIPLSQARAQAVANYLAGQGVPRTRIN 176 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G ++ NRR++I + Q Sbjct: 177 A-QGLGASNPIASNATAEGREQNRRVEISIYATQ 209 >gi|256419593|ref|YP_003120246.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256034501|gb|ACU58045.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 671 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D + P++++VL + ++ + +I + HTD+ + N +LS RA S Sbjct: 557 YDFDKATLRPQSLIVLDTVVSIMQDNPNIIIEMSAHTDS---KGKDEYNMKLSQKRAQSC 613 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVED 340 L+ G+S +R+ G+ R + +P NRR + V Sbjct: 614 VDYLISKGISSERMIA-KGYGETRPIAPNTLPNGKDNPEGRQLNRRTEFKVLR 665 >gi|124383073|ref|YP_001024835.1| hypothetical protein BMA10229_1027 [Burkholderia mallei NCTC 10229] gi|124291093|gb|ABN00363.1| OmpA domain protein [Burkholderia mallei NCTC 10229] Length = 560 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 384 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 443 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 444 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 496 >gi|237742848|ref|ZP_04573329.1| outer membrane protein [Fusobacterium sp. 4_1_13] gi|229430496|gb|EEO40708.1| outer membrane protein [Fusobacterium sp. 4_1_13] Length = 164 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E + I + D+ FD S P+ +L + E + + ++I GHTD + Sbjct: 21 EEPPEEMTIVLDDRALN--FDFDKSFVKPQYDEMLTNLKEFIMKNDYELTIEGHTD---Y 75 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 + N LS RA + L++ G+ RI I + + NRR++ Sbjct: 76 IASNQYNMGLSKRRAEAVKAKLIELGLDPSRIVAIVPKGEEEPVADNKTTEGRAKNRRVE 135 Query: 336 ILVEDR 341 + R Sbjct: 136 FKLVKR 141 >gi|262369640|ref|ZP_06062968.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315708|gb|EEY96747.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 485 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 99/298 (33%), Gaps = 14/298 (4%) Query: 46 AFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEH 105 A F ++ T+ A N + G + + S N + I + Sbjct: 181 ALFAFIFRACTEKATTETAPAANVNSSQPAKFQITTGATGDLVTCQIFSANAAYVEILQK 240 Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 K + IG + E S S + G L + Sbjct: 241 EVKQIFNNSIGCGADMQSMYHTEFIDQDAIPSVISALKGVPNVNLTWFGNQLSIQSQDPT 300 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + K + P L ++ + + + IS +A+ + V T + Sbjct: 301 NALKVADQIKPLLRNMTVVTQQPLDVNRAVDTSISDA-ERALAEINPEQVRALDVATALN 359 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284 + II+ FD +SS +L + ++ + +++ GHTDA+ A N Sbjct: 360 LQIIN------FDTASSTIPDVNKSILDQAAALMQKAPQVKLTVMGHTDAT---GDAAVN 410 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 LS +RA + L+ GV ++ I G+ + + D NRRI+ V + Sbjct: 411 KTLSQNRAQAVVDYLIFKGVDPAQLRAI-GYGQEKPIADNQTDEGKFKNRRIEFEVLN 467 >gi|49081488|gb|AAT50144.1| PA1119 [synthetic construct] Length = 169 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P++ L KI L + + GHTD + + N +LS RA Sbjct: 62 KVLFGNNLDRLNPDSRNTLTKIARALLAVDIGKVRLEGHTDN--YGDEGY-NQKLSERRA 118 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S V ++G+ I + G + + S NRR+ I+V Sbjct: 119 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 165 >gi|167818821|ref|ZP_02450501.1| hypothetical protein Bpse9_27048 [Burkholderia pseudomallei 91] Length = 490 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 314 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 373 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 374 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 426 >gi|126642864|ref|YP_001085848.1| outer membrane protein A [Acinetobacter baumannii ATCC 17978] Length = 346 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 221 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 277 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 278 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 336 Query: 342 Q 342 Q Sbjct: 337 Q 337 >gi|260777763|ref|ZP_05886656.1| hypothetical protein VIC_003160 [Vibrio coralliilyticus ATCC BAA-450] gi|260605776|gb|EEX32061.1| hypothetical protein VIC_003160 [Vibrio coralliilyticus ATCC BAA-450] Length = 1581 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 30/198 (15%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + K+ ++ I + +L + ++++++ + +K + +D I Sbjct: 543 EMAKKAKSAKQGIGEVAYDYLDKIPVWNTSRENQQEKIEQVLEKARAA-----SDEITAT 597 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTE-VISIRG 270 ++ + GI I F+ S P + + EVL + + I G Sbjct: 598 MVNNSRGAGIKIEFN-------FNSRKSELERNAPLFSQLASALAEVLESESNLRVEIEG 650 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLK-------- 321 H + N ++S DRA A Q+L S V +DRI ++ F + Sbjct: 651 HACQV---DTEEANMKVSADRANYAKQLLIESSDVFKDRI-SVAVFGESKPLYIPKKGES 706 Query: 322 -IASDPMNSANRRIDILV 338 ++P NRR++I + Sbjct: 707 IDRNNPNLRQNRRVEIRI 724 >gi|169632496|ref|YP_001706232.1| putative Outer membrane protein precursor (OmpA-like) [Acinetobacter baumannii SDF] gi|169151288|emb|CAO99984.1| putative Outer membrane protein precursor (OmpA-like) [Acinetobacter baumannii] Length = 357 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 232 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 288 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 289 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 347 Query: 342 Q 342 Q Sbjct: 348 Q 348 >gi|126737253|ref|ZP_01752988.1| OmpA family protein [Roseobacter sp. SK209-2-6] gi|126721838|gb|EBA18541.1| OmpA family protein [Roseobacter sp. SK209-2-6] Length = 210 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ L + + + GHTD+ N RL RA +A Sbjct: 69 FDFDSAQLDATARAALDRQAHWIKQFPEVRFRVYGHTDSV---GSDAYNKRLGRRRAQAA 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L++ G+S R+ + F R I + NRR Sbjct: 126 VNYLVRQGISRHRLEALVSFGETRPVIVTAHRERRNRR 163 >gi|315122505|ref|YP_004062994.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495907|gb|ADR52506.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 190 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S I + + VL I L I+I GHTD+ + N +S R+ Sbjct: 83 FSSGS-ILHKDIVPVLNSIATTLNKFPSTKIAITGHTDS--IGTLEY-NLLISQQRSQII 138 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++ GVS DR + GFA+ R +D N+R++I Sbjct: 139 TDYLIEKGVSPDRFAPPQGFAYKRPIDTNDTQEGRKNNQRVEI 181 >gi|254459056|ref|ZP_05072479.1| OmpA domain protein [Campylobacterales bacterium GD 1] gi|207084327|gb|EDZ61616.1| OmpA domain protein [Campylobacterales bacterium GD 1] Length = 254 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E + LQ L + I I G+TD+ A N LS +RA + Sbjct: 152 FAPSKYNVSEELVNDLQNFALFLKENPGYQILIYGYTDSI---GSAAANKTLSQNRANAV 208 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339 + L + G+ R++ I G A+ + + NRRI++ + Sbjct: 209 KEALSRYGIKTTRMTAIGKGEANPIADNTTKTGRAENRRIEVELL 253 >gi|300770385|ref|ZP_07080264.1| lipoprotein PG3 [Sphingobacterium spiritivorum ATCC 33861] gi|300762861|gb|EFK59678.1| lipoprotein PG3 [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 19/152 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ A +I +T++G + GI I+ +FD + S Sbjct: 80 KKMDKQAAEIENTVAGA---------EVIKSDEGI---IVKFDEGILFDFNKSDLKASAK 127 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + K+ L + I + GHTD N ++S RA + + G++ R Sbjct: 128 TNISKLVATLNKEPDTKILVIGHTDNI---GSLAANQKVSEARAAAVKTYAVSQGLNGGR 184 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I+ G + ++D + NRR++I++ Sbjct: 185 IN-TEGKNYSEPLASNDTDAGRAENRRVEIVI 215 >gi|67639335|ref|ZP_00438203.1| OmpA domain protein [Burkholderia mallei GB8 horse 4] gi|121597986|ref|YP_990337.1| hypothetical protein BMASAVP1_0732 [Burkholderia mallei SAVP1] gi|126447196|ref|YP_001079177.1| hypothetical protein BMA10247_A2001 [Burkholderia mallei NCTC 10247] gi|167003578|ref|ZP_02269364.1| OmpA family protein [Burkholderia mallei PRL-20] gi|254177240|ref|ZP_04883896.1| OmpA domain protein [Burkholderia mallei ATCC 10399] gi|254203187|ref|ZP_04909549.1| OmpA family protein [Burkholderia mallei FMH] gi|254208522|ref|ZP_04914871.1| OmpA family protein [Burkholderia mallei JHU] gi|121225784|gb|ABM49315.1| OmpA domain protein [Burkholderia mallei SAVP1] gi|126240050|gb|ABO03162.1| OmpA domain protein [Burkholderia mallei NCTC 10247] gi|147746232|gb|EDK53310.1| OmpA family protein [Burkholderia mallei FMH] gi|147751209|gb|EDK58277.1| OmpA family protein [Burkholderia mallei JHU] gi|160698280|gb|EDP88250.1| OmpA domain protein [Burkholderia mallei ATCC 10399] gi|238519871|gb|EEP83337.1| OmpA domain protein [Burkholderia mallei GB8 horse 4] gi|243060913|gb|EES43099.1| OmpA family protein [Burkholderia mallei PRL-20] Length = 552 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 376 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 435 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 436 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488 >gi|237653594|ref|YP_002889908.1| flagellar motor protein MotD [Thauera sp. MZ1T] gi|237624841|gb|ACR01531.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 279 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 110/330 (33%), Gaps = 81/330 (24%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ +D+ +N W + YADF+T+L AFF+VM+ +++ ++ + + +N+ Sbjct: 1 MRRRRKLDEEHDNHERWLVSYADFITLLFAFFVVMYSLSSVNEGKYRVLSDSLVQAFRNV 60 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 G E+ K+ + + IT+ + Q++Q Sbjct: 61 NVNESG--------EQIVLPKVSVVPSQAITRPAPPAVDPVVEQRRQQAAQRMRNV---- 108 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 ++ + L+ + G+ K T+ ++ E N L E L LQ +A Sbjct: 109 ---ADEIRRVLSPLTGSGQ--VKVTEGAFGVSVEINASLLFAPGEAALGSNAVSALQAVA 163 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + ++ + + V T R F + ++ Sbjct: 164 RVLAPAEFPITVEGHTDNVPISTFR---------------FPSN------------WELS 196 Query: 257 EVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 V A + + I G T A L +G + Sbjct: 197 AVRASTVARLFIDNGVTPAR-----------------------LTAAG-----------Y 222 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDRQG 343 A R A + NRR+ IL+E R Sbjct: 223 ADQRPVADNADEEGRGRNRRVTILIESRMA 252 >gi|218261428|ref|ZP_03476249.1| hypothetical protein PRABACTJOHN_01915 [Parabacteroides johnsonii DSM 18315] gi|218224038|gb|EEC96688.1| hypothetical protein PRABACTJOHN_01915 [Parabacteroides johnsonii DSM 18315] Length = 214 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 9/161 (5%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 ++ ++ +N S + K L E + +++ + + + Sbjct: 60 TALERDTTRMGKNIRNYQNMLSTNMTEQEKLNSLLSQKMSELDERERTINELQDMINAQT 119 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +R+Q+L + L G +D + + +++ D +F+ S+ Sbjct: 120 ERVQNLLNSVKDALLGFSSDEL----TVREKDGKVYVAMSD---KLLFESGSARVDKRGK 172 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA-RDNWRLS 288 L K+ EVL ++ + I GHTD+ P +DNW LS Sbjct: 173 EALAKLAEVLNKQSDIDVYIEGHTDSKPINTAQFKDNWDLS 213 >gi|254487597|ref|ZP_05100802.1| OmpA family domain protein [Roseobacter sp. GAI101] gi|214044466|gb|EEB85104.1| OmpA family domain protein [Roseobacter sp. GAI101] Length = 312 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S P + L + LA +++ GHTD DN LS RA S Sbjct: 205 FETGTSGLGPAKVAALDSLAAFLAGDPALRVALVGHTDTV---GGLEDNVALSRSRAASV 261 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 Q L+ + GVS D++ G + ++ ANRR++ ++ G Sbjct: 262 RQRLIDAYGVSPDQLEA-QGMGYLAPIASNLTAQGREANRRVEAVLLPEPG 311 >gi|53721567|ref|YP_110552.1| hypothetical protein BPSS0531 [Burkholderia pseudomallei K96243] gi|126442377|ref|YP_001061803.1| hypothetical protein BURPS668_A0804 [Burkholderia pseudomallei 668] gi|126457957|ref|YP_001074752.1| hypothetical protein BURPS1106A_A0716 [Burkholderia pseudomallei 1106a] gi|134283082|ref|ZP_01769784.1| ompA family protein [Burkholderia pseudomallei 305] gi|167905639|ref|ZP_02492844.1| hypothetical protein BpseN_25596 [Burkholderia pseudomallei NCTC 13177] gi|167921862|ref|ZP_02508953.1| hypothetical protein BpseBC_25138 [Burkholderia pseudomallei BCC215] gi|217424539|ref|ZP_03456037.1| type IV/VI secretion system protein, DotU/OmpA family protein [Burkholderia pseudomallei 576] gi|226196513|ref|ZP_03792094.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|242312248|ref|ZP_04811265.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|254185465|ref|ZP_04892053.1| ompA family protein [Burkholderia pseudomallei 1655] gi|254296659|ref|ZP_04964113.1| ompA family protein [Burkholderia pseudomallei 406e] gi|52211981|emb|CAH37988.1| OmpA-family membrane protein [Burkholderia pseudomallei K96243] gi|126221868|gb|ABN85373.1| type IV/VI secretion system protein, DotU/OmpA family protein [Burkholderia pseudomallei 668] gi|126231725|gb|ABN95138.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|134245730|gb|EBA45822.1| ompA family protein [Burkholderia pseudomallei 305] gi|157806733|gb|EDO83903.1| ompA family protein [Burkholderia pseudomallei 406e] gi|184209700|gb|EDU06743.1| ompA family protein [Burkholderia pseudomallei 1655] gi|217392463|gb|EEC32487.1| type IV/VI secretion system protein, DotU/OmpA family protein [Burkholderia pseudomallei 576] gi|225931389|gb|EEH27395.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|242135487|gb|EES21890.1| OmpA family protein [Burkholderia pseudomallei 1106b] Length = 552 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 376 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 435 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 436 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488 >gi|304412567|ref|ZP_07394172.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307303583|ref|ZP_07583336.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|304349043|gb|EFM13456.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306912481|gb|EFN42904.1| OmpA/MotB domain protein [Shewanella baltica BA175] Length = 369 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + + F S++ ++++ L + E + I GH N LS Sbjct: 251 EDVGSIQFANDSAVVKKVFYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 307 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + Q+L++ G+S++R++ +G+ + +A D +ANRRI+ +V Sbjct: 308 DKRADAVAQILVEKYGISKNRVTS-NGYGVTQPLVAGDSKEAYAANRRIEAIVTT 361 >gi|257091690|ref|YP_003165331.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044214|gb|ACV33402.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 198 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S + L I + I I GHTD + DN RL+L RA S Sbjct: 97 FLEGSDELTAASKTELVAILAEIKARPVPDIVIVGHTDRV---GMVADNDRLALRRADSF 153 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 + L++ G++++ I + +G + + NRR++ILV Sbjct: 154 RKKLLQQGIADEAI-QTAGRGEREPLVNTPDETPEPRNRRVEILV 197 >gi|223039685|ref|ZP_03609971.1| putative chemotaxis protein MotB [Campylobacter rectus RM3267] gi|222879068|gb|EEF14163.1| putative chemotaxis protein MotB [Campylobacter rectus RM3267] Length = 369 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 71/359 (19%), Positives = 127/359 (35%), Gaps = 56/359 (15%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINAT------DDDTKKAIEQYFNPFG 73 K + + W I YAD M LM F+ M II A +++ + Sbjct: 2 KTRSEGKSGDQTFW-ISYADLMAGLM--FVFMLIIGAVVVKYVLSQSDLAKLQKDLSERE 58 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSID----EHITKNSVDLKIGSTNQKKQYQRLEN 129 K + ++ + ++N + N + I + ++ G +K + L Sbjct: 59 KQIASSQNELVRKENVIKEIFSNLDRAKSENKELADINRLVNEMLEGVKKEKNELTNLTQ 118 Query: 130 NIFYLSNS-------------QQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 N Q + + L + D+ K +N++ N + Sbjct: 119 TYEINLNDANKTIADLQDRVLQLGQILAQRDETLKDVNATLAQKEDVIKVLNEKFNSEIS 178 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 + K K +++DL+ S+ +S L A + V + + ++ + + Sbjct: 179 RYLALEEDFNKTKDKIKDLSSLRSNVISNLRA-KLGGKVNIDPSSG-----VVSLPESIL 232 Query: 237 FDKSSSIPLPETIVVLQKIG-----------EVLAHSTEVISIRGHTDASPFRNIARDNW 285 FD S E V L++I E++ H I I GHT++ N Sbjct: 233 FDTGSYELKDEAKVRLKEILQTYFEAILNSEEIIKHID-RIVIEGHTNSV---GSYMYNL 288 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISK---ISGFAHHRLKIAS---DPMNSANRRIDILV 338 LS RAYS + S + R+ + SG + L I + DP S RRI+I + Sbjct: 289 DLSQKRAYSVLD-FIYSWNKDKRLERYLIASGRSFSDLVIKNGKEDPDAS--RRIEIKI 344 >gi|126173289|ref|YP_001049438.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|125996494|gb|ABN60569.1| OmpA/MotB domain protein [Shewanella baltica OS155] Length = 363 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + + F S++ ++++ L + E + I GH N LS Sbjct: 245 EDVGSIQFANDSAVVKKVFYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 301 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + Q+L++ G+S++R++ +G+ + +A D +ANRRI+ +V Sbjct: 302 DKRADAVAQILVEKYGISKNRVTS-NGYGVTQPLVAGDSKEAYAANRRIEAIVTT 355 >gi|269964049|ref|ZP_06178354.1| outer membrane protein, putative [Vibrio harveyi 1DA3] gi|269831190|gb|EEZ85344.1| outer membrane protein, putative [Vibrio harveyi 1DA3] Length = 206 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 5/112 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S P ++++ E L SI H AS N LS RA Sbjct: 81 RVLFANDSDEINPVFHRQIRQLSEFLNEYPST-SIELHGYASKVGGSTH-NLDLSKRRAN 138 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G++ +R+ +I G+ L + ++ NRR+ V +G Sbjct: 139 NVRSALLGYGIAANRV-RIVGYGDTHLAQQGTDEVSHALNRRVTASVVGYKG 189 >gi|146299407|ref|YP_001193998.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153825|gb|ABQ04679.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 666 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 23/163 (14%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFET---TRTGILISIIDQRNTPM--FDKSSSIPL 245 L+ K I++ + +N +K V T G L+ I PM FD + Sbjct: 513 ALEKKPKPITAIPVVIKTNNSIKPVKVTIAVGTDLGKLLKI------PMNFFDLGKATIK 566 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 ++ LQK+ ++L + IR HTD+ R+ + N LS RA S L+ G+ Sbjct: 567 KSSVPQLQKMVDMLNQYPTIKVDIRSHTDS---RSSSESNQILSDKRAQSTKDWLVSKGI 623 Query: 305 SEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + DR++ GF +L ++ + NRR + ++ Sbjct: 624 NADRLTA-KGFGETQLVNKCADGVKCTEQQHQQNRRSEFIIVS 665 >gi|307826489|ref|ZP_07656672.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307732463|gb|EFO03357.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 238 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 17/242 (7%) Query: 109 NSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 G + Q +++ + Q E +N +E ++ + +S Sbjct: 6 PPKKTNEGLELKHTQSPAVDDGLQPPITQLQGEVTQNQAKGLTESAQNKGLELEPTQSP- 64 Query: 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI 228 +E + + + K L + A+ + A + E +L+ Sbjct: 65 IDEGSQSAITQPQGEVTPDQAKGLTESAQPAGDSGFPTPAAEGKRSSQHEPVS--LLVL- 121 Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDA-SPF----RNIAR 282 F P + I ++ + + + GH D PF +++ Sbjct: 122 ----GGGFFSSGQITPRANIQDAIDNIIPLIQTRPLDNVVVEGHADKWVPFGASPAQVSK 177 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 N +SL RA + QVL K G++ DRI + G ++ + NRR++I + Sbjct: 178 LNENISLRRANAIAQVLKKKGIASDRII-VHGLGDTVPLASNLTYDGRMKNRRVEIKLLP 236 Query: 341 RQ 342 Q Sbjct: 237 AQ 238 >gi|260548855|ref|ZP_05823077.1| outer membrane protein omp38 [Acinetobacter sp. RUH2624] gi|260408023|gb|EEX01494.1| outer membrane protein omp38 [Acinetobacter sp. RUH2624] Length = 350 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346 Query: 342 Q 342 Q Sbjct: 347 Q 347 >gi|148839593|sp|A3M8K2|OMP38_ACIBT RecName: Full=Outer membrane protein omp38; Flags: Precursor gi|193078282|gb|ABO13246.2| outer membrane protein A [Acinetobacter baumannii ATCC 17978] Length = 356 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346 Query: 342 Q 342 Q Sbjct: 347 Q 347 >gi|150021176|ref|YP_001306530.1| flagellar motor protein-like protein [Thermosipho melanesiensis BI429] gi|149793697|gb|ABR31145.1| Flagellar motor protein-like protein [Thermosipho melanesiensis BI429] Length = 288 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265 +++ V + G LI+I D +F+ S+ E +L+K+G V+ H+T V Sbjct: 87 ISEEYKGKVTVQEKDEGTLITISDLD---IFEPGSARLTAEAKRLLEKLGTVIIEHTTNV 143 Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAY 296 + I G + P +I NW LS RA S Sbjct: 144 LEIYGFANEIPLPESSIYFSNWHLSSARAASVV 176 >gi|91792625|ref|YP_562276.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91714627|gb|ABE54553.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 223 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K TR+G I I++ N F ++ VL + V + + I G Sbjct: 95 LKSTGVSVTRSGDNI-ILNMPNDVTFGVDETVLSSRAKEVLASVALVAKEFDDTRLHITG 153 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 +TD+ N RLS RA Q LM+ V+ +R+ SG + Sbjct: 154 YTDS---SGSDSYNLRLSQVRANEVGQYLMQQKVAANRVVS-SGRGESSPIADNGTPAGR 209 Query: 329 SANRRIDILV 338 + NRR++I++ Sbjct: 210 AQNRRVEIVL 219 >gi|114764947|ref|ZP_01444120.1| OmpA family protein [Pelagibaca bermudensis HTCC2601] gi|114542659|gb|EAU45683.1| OmpA family protein [Roseovarius sp. HTCC2601] Length = 221 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ L++ + + GHTD N RL + RA + Sbjct: 77 FAFNSAQLDNGARATLREQANWIRQFPEVRFRVYGHTD---LVGSPAYNKRLGMARAQAV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S +R+ + + + I + NRR Sbjct: 134 VSYLAAQGISRERLEAVVSYGETQPLIVTSERERRNRR 171 >gi|317127982|ref|YP_004094264.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472930|gb|ADU29533.1| OmpA/MotB domain protein [Bacillus cellulosilyticus DSM 2522] Length = 484 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289 + +FD S E V++++ L + +I IRGHTD N+ LS Sbjct: 372 PDDILFDFDQSSLKEEAKEVIKEVLPALDSLKDGTIIEIRGHTDNE---GDPDYNYILSE 428 Query: 290 DRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 +RA S Y + SG S D I ++ F +++ NRR++++++ R Sbjct: 429 ERAESVYNFVRNSGESLDHIEFRVKAFGETAPIASNEDEEGRERNRRVELVIDPR 483 >gi|330873229|gb|EGH07378.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 229 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIIGYT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330 D++ + N LS RA S L GV + + + G + ++ N + Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADTNGRAQ 213 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 214 NRRVEVNLKPIPG 226 >gi|153872253|ref|ZP_02001198.1| outer membrane protein OprF [Beggiatoa sp. PS] gi|152071282|gb|EDN68803.1| outer membrane protein OprF [Beggiatoa sp. PS] Length = 175 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + +L++ E L ++ + I GHTD+ A N LS RA + Sbjct: 71 FDTDCPAIKANSYTLLREYAEALKTGLASVKLEIGGHTDS---SGPAYYNLTLSKKRAQA 127 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 L+ + ED + G+ + ++ + + NRR++ V Sbjct: 128 VKDFLVFAYAVEDNRLIVKGYGETQPIASNRTRDGQAKNRRVEFKVIR 175 >gi|84501388|ref|ZP_00999593.1| OmpA/MotB domain protein [Oceanicola batsensis HTCC2597] gi|84390679|gb|EAQ03167.1| OmpA/MotB domain protein [Oceanicola batsensis HTCC2597] Length = 192 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 13/117 (11%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279 + I I FD S+ + L + +V+ + I GHTDA Sbjct: 82 EDQVNIQIS-------FDFDSAALRDDQKPKLATLCQVMKSADIGTFRIIGHTDA---SG 131 Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 A N RLSL RA + L G+ E R+ + G +DP ANRR++ Sbjct: 132 SASYNERLSLLRAEEVKRYLSGDCGIEEQRLEAV-GVGEQFPLDKADPRGDANRRVE 187 >gi|113971301|ref|YP_735094.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113885985|gb|ABI40037.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 372 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + F S++ E ++++ L + E + I GH N L Sbjct: 253 QEDVGSIQFANDSAVVKKEYYKDIERLANYLNKNPEFTVEIAGHASNV---GKPDYNMTL 309 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 S RA + ++L++ G+S+ R++ +G+ + +A D ++ANRRI+ +V + Sbjct: 310 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGDSKEAHAANRRIEAIVTTTE 366 >gi|300771716|ref|ZP_07081591.1| outer membrane protein OprF [Sphingobacterium spiritivorum ATCC 33861] gi|300761705|gb|EFK58526.1| outer membrane protein OprF [Sphingobacterium spiritivorum ATCC 33861] Length = 460 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 Q + F+ SS+ E+ L ++ + L + +++ G+ A N LS D Sbjct: 355 QYGSIQFEFDSSVLKTESYSTLDRLAKELRDNNSSVTLDGYASAE---GTEAYNMTLSKD 411 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 RA + Q L+ +GV+ +++ +G+ ++ NRR++I Sbjct: 412 RANAVKQYLVNAGVTAAKVTA-NGYGEANPVASNATEEGRIQNRRVEI 458 >gi|227536011|ref|ZP_03966060.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227244124|gb|EEI94139.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 460 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 Q + F+ SS+ E+ L ++ + L + +++ G+ A N LS D Sbjct: 355 QYGSIQFEFDSSVLKTESYSTLDRLAKELRDNNSSVTLDGYASAE---GTEAYNMTLSKD 411 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 RA + Q L+ +GV+ +++ +G+ ++ NRR++I Sbjct: 412 RANAVKQYLVNAGVTAAKVTA-NGYGEANPVASNATEEGRIQNRRVEI 458 >gi|53716506|ref|YP_105228.1| hypothetical protein BMAA0453 [Burkholderia mallei ATCC 23344] gi|52422476|gb|AAU46046.1| OmpA domain protein [Burkholderia mallei ATCC 23344] Length = 571 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 395 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 454 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 455 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507 >gi|256421238|ref|YP_003121891.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256036146|gb|ACU59690.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 594 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S P + L ++ +L + VI + HTD+ + N +LS RA S L+ Sbjct: 489 SYLQPASFPSLDRLVAMLKKYPKIVIELSAHTDS---KGSNDLNEKLSDARAKSCVDYLV 545 Query: 301 KSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVEDRQ 342 G+ R+ + G+A + +P + NRR + + R+ Sbjct: 546 SQGIESTRL-QAKGYAASHPVAPNTNKDGSDNPEGRARNRRTEFKILSRE 594 >gi|328542425|ref|YP_004302534.1| outer membrane lipoprotein [polymorphum gilvum SL003B-26A1] gi|326412172|gb|ADZ69235.1| Probable outer membrane lipoprotein [Polymorphum gilvum SL003B-26A1] Length = 155 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 FD+ S+ + + K L + ++ I+GH D N LS RA Sbjct: 42 RIFFDRGSAELTETARMTIDKQAAWLRANPRWLVKIQGHADD---PGSEAANKALSTKRA 98 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 + L+ GV R+ I G+ R D + + NRR+ Sbjct: 99 EAVRDALVALGVDGKRMW-IKGYGIERPVTDCDELTCHVQNRRV 141 >gi|261212428|ref|ZP_05926713.1| protein F-related protein [Vibrio sp. RC341] gi|260838359|gb|EEX65015.1| protein F-related protein [Vibrio sp. RC341] Length = 182 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 76/178 (42%), Gaps = 13/178 (7%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 D+ + + Y + ++ +++ + ++Q + LV++ I ++ Sbjct: 8 DVAPKGDFDVRYPEWGYAPQQSVSVAQTPKMQARSSSYEQLRQYLVSNGIEHEIMPGDYP 67 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280 +I +NT F+ S+ + L K+ + LA + V I + GHTD + Sbjct: 68 ------MIKLKNTIKFETGSAKVSASSKQWLDKMAQFLAGESGVDIVLEGHTDNT---GT 118 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + N +LS RA S L++ V+++ I G+ H ++ + NRR+++ Sbjct: 119 QKFNDKLSEKRATSVKSALVQRQVAQNAIY-TRGYGEHVPACTNNTKKGRACNRRVEV 175 >gi|254187351|ref|ZP_04893865.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|157935033|gb|EDO90703.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] Length = 571 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 395 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 454 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 455 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507 >gi|126214998|emb|CAM35534.1| hypothetical protein [Pseudomonas fluorescens] Length = 254 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 13/236 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 S N + + L+ N + + ++K + + Sbjct: 16 STPPNANLENARTNFSSLQTNPQATKLAALETKDASEWLDKADKAYRDKEDEKKVDQLAY 75 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + +L K ++ + L A + + + T G L++ Sbjct: 76 LTNQRVEVAKDTIVLRESEAKLKNAGDERARALLDARDAQIKQLQDSLNAKQTDRGTLVT 135 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +F + S +V + K+ + L + + + + G+TD++ N Sbjct: 136 FGD----VLFATNKSDLKSSGLVNITKLAQFLRDNPDRKVIVEGYTDST---GSDSYNQS 188 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 LS RA S + L + GV RI G+ + + NRR+++ + + Sbjct: 189 LSERRAASVQRALAQQGVDISRIV-TQGYGKEYPVADNGSVSGRAMNRRVEVTISN 243 >gi|76819156|ref|YP_337240.1| hypothetical protein BURPS1710b_A2089 [Burkholderia pseudomallei 1710b] gi|237509287|ref|ZP_04522002.1| type IV / VI secretion system protein, DotU family [Burkholderia pseudomallei MSHR346] gi|254198855|ref|ZP_04905273.1| ompA family protein [Burkholderia pseudomallei S13] gi|254264296|ref|ZP_04955161.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|76583629|gb|ABA53103.1| OmpA domain protein [Burkholderia pseudomallei 1710b] gi|169657027|gb|EDS88421.1| ompA family protein [Burkholderia pseudomallei S13] gi|235001492|gb|EEP50916.1| type IV / VI secretion system protein, DotU family [Burkholderia pseudomallei MSHR346] gi|254215298|gb|EET04683.1| ompA family protein [Burkholderia pseudomallei 1710a] Length = 571 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 395 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 454 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 455 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 507 >gi|153834458|ref|ZP_01987125.1| outer membrane protein OmpA [Vibrio harveyi HY01] gi|148869154|gb|EDL68186.1| outer membrane protein OmpA [Vibrio harveyi HY01] Length = 318 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T F +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 205 GTGSFALNSTTLKPESAAKLDDLVAFLNEYPQANVDVIGYTDT---SGPAAYNQKVSEKR 261 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A S L++ G+ RI G + +++ NRR++++V Sbjct: 262 AESVAHALVEKGIDASRIHA-RGEGENNPIASNETREGREQNRRVEVVV 309 >gi|115360943|ref|YP_778080.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115286271|gb|ABI91746.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 239 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRA 292 F S++ L K+ L + + + G+TDA+ A N LS RA Sbjct: 137 FATDSAVLTSAATAALDKL---LNQQGDRHFARVDVDGYTDAT---GSAAHNQALSKRRA 190 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 + L + G+ D +G ++D + NRR++I ++ Sbjct: 191 DAVAAYLREHGLKAD-AFAATGHGEANPAASNDTAEGRARNRRVEISLQ 238 >gi|260768264|ref|ZP_05877198.1| outer membrane protein [Vibrio furnissii CIP 102972] gi|260616294|gb|EEX41479.1| outer membrane protein [Vibrio furnissii CIP 102972] Length = 176 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P +Q + E L I I+G+T N LS RA + Sbjct: 56 LFANDSYEINPVFADQIQAMAEFLKTYQSASIEIQGYTSKV---GTNEYNQELSQKRAEA 112 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 + L+ G+S R+ +I GF RL D + + NRR+ Sbjct: 113 VERKLLSYGISPKRV-RIIGFGETRLLDDGDTNSAHAVNRRVT 154 >gi|254462893|ref|ZP_05076309.1| OmpA family protein [Rhodobacterales bacterium HTCC2083] gi|206679482|gb|EDZ43969.1| OmpA family protein [Rhodobacteraceae bacterium HTCC2083] Length = 219 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L++ + + GH DA N L L RAY+ Sbjct: 81 FAFGSAQLDAGAHDTLREQAAWIRQFPEVRFRVYGHADAV---GGNASNKSLGLQRAYAV 137 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L +G+ + R+ +S F + I S+ NRR Sbjct: 138 VNFLAANGIGKSRLEAVSSFGEEQPLIVSEGRERRNRR 175 >gi|84394243|ref|ZP_00992970.1| Outer membrane protein [Vibrio splendidus 12B01] gi|84375118|gb|EAP92038.1| Outer membrane protein [Vibrio splendidus 12B01] Length = 356 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287 + + MF +S+ + + L + EVL +++ GHTD++ A N + Sbjct: 228 TESYSQEMFATNSTELSTDGKIALMPLVEVLKAHPQSSVAVVGHTDST---GAAEYNLMI 284 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 S RA + + + G+ DRI+ SG ++ + NRR+D Sbjct: 285 SKKRAAAVAAYIEEQGIEADRITA-SGEGEENPIASNATAEGRAQNRRVD 333 >gi|260900780|ref|ZP_05909175.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|308108014|gb|EFO45554.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] Length = 205 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ + L I ++G+ + + N LS RA Sbjct: 82 RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 138 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + + L+++G++ DR++ I G+ L + ++ NRR+ V +G Sbjct: 139 ENVRKALLQNGIAPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 190 >gi|163866824|gb|ABY47582.1| outer membrane protein A [Acinetobacter baumannii] Length = 337 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331 >gi|332707360|ref|ZP_08427410.1| peptidoglycan-associated lipoprotein [Lyngbya majuscula 3L] gi|332353851|gb|EGJ33341.1| peptidoglycan-associated lipoprotein [Lyngbya majuscula 3L] Length = 287 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F++S S PE ++L KI L I I HTD A++N LS +RA + Sbjct: 185 LFEESKSTLRPEAGLILDKIVTDLQAYPSSTIRIAIHTDN---PREAKENRNLSFERAKA 241 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 Q L + R I G+ R +A+D NRR++I V+ Sbjct: 242 VQQYLSSALDDSYRWL-IIGYGETRPLVANDTEVNQQRNRRVEIAVD 287 >gi|313887354|ref|ZP_07821045.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299263|ref|YP_004441184.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] gi|312923273|gb|EFR34091.1| OmpA family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176326|gb|AEE12016.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 225 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 16/155 (10%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R++ K++ L G ET G I ++ +F+ SSS + Sbjct: 72 RMEKQKKELEQQLPA--------GTQVETVNEGQAIKVVFDSG-LLFNTSSSTLSSSSRN 122 Query: 251 VLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L+K + L + + + I GHTD+ R N LSL+RA S L GVS R+ Sbjct: 123 DLRKFADNLNKNDDTVLEIIGHTDS---SGNDRINDPLSLNRAKSVRDFLEGQGVSSVRM 179 Query: 310 SKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 K G H + NRR+++ + Q Sbjct: 180 -KYEGRGSHEPVDTNATAEGKRKNRRVEVFILPSQ 213 >gi|254355979|ref|ZP_04972256.1| OmpA family protein [Burkholderia mallei 2002721280] gi|148024962|gb|EDK83131.1| OmpA family protein [Burkholderia mallei 2002721280] Length = 560 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFR-NIARDNWRLSLDRAYSA 295 FD + + + ++++G A + + GHTD+ P R + DN LS RA + Sbjct: 384 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNV 443 Query: 296 YQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 L K+ + R + SG + + + NRR+D+L Sbjct: 444 ADELRKTALPGGARAPENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 496 >gi|153837358|ref|ZP_01990025.1| putative protein F-related protein [Vibrio parahaemolyticus AQ3810] gi|308094490|ref|ZP_05889709.2| OmpA family protein [Vibrio parahaemolyticus AN-5034] gi|149749273|gb|EDM60052.1| putative protein F-related protein [Vibrio parahaemolyticus AQ3810] gi|308090642|gb|EFO40337.1| OmpA family protein [Vibrio parahaemolyticus AN-5034] Length = 225 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 11/180 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 K+ + + S + R + A+K S+ ++ L + ET Sbjct: 49 APKTNTELRHPEWGYASASHVSTAPRVNQTARAAEKKSNNVTSLEMFLDRHNIPHETIGG 108 Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280 G ++I + +Q + F S+ + L+K+G LA + + I GH D++ + Sbjct: 109 GHLMIRLKEQVH---FQTGSAQLSSNSQDWLRKLGHYLAGRTDVDVVIDGHADSTGAASF 165 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 LS RA + ++ S + R+ GF + + A+ + NRR+++++ Sbjct: 166 NDT---LSEKRAREVEKQMLASSIPRQRVFS-RGFGEYVPQCSNATSSGKACNRRVELML 221 >gi|91227007|ref|ZP_01261544.1| putative protein F-related protein [Vibrio alginolyticus 12G01] gi|91188809|gb|EAS75095.1| putative protein F-related protein [Vibrio alginolyticus 12G01] Length = 224 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 11/180 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 KS + + S + + R + + K S ++ L + ET Sbjct: 48 APKSNTELRHPEWGYPSASNVASSPRSYQTARASVKKSQNVTSLEMFLSRHNIPHETLSG 107 Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280 G ++I + +Q + F S+ ++ ++ IG LA + + I GH D++ Sbjct: 108 GHLMIRLKEQVH---FQTGSARLSAQSQDWIRNIGHYLAGRTDVDVVIDGHADST---GA 161 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 N LS RA + L+ + + R+ GF + K ++ + NRR+++ + Sbjct: 162 ESFNDTLSEKRAREVEKQLLATSIPRQRVFS-RGFGEYVPKCSNATASGKACNRRVELTL 220 >gi|194337429|ref|YP_002019223.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309906|gb|ACF44606.1| OmpA/MotB domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 337 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ L++I +L + + GHTD N LS RA + Sbjct: 235 FDPNKWDIKPESRPALKEIAILLNKQPTLRLHVVGHTDNV---GGYEANTVLSKRRAEAV 291 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L+K G+S R++ +G A+ ++ + + NRR++++ Sbjct: 292 AASLVKDFGISALRLTA-NGAAYLAPVASNSTEAGRAKNRRVELV 335 >gi|157164740|ref|YP_001466195.1| outer membrane fibronectin-binding protein [Campylobacter concisus 13826] gi|112801501|gb|EAT98845.1| outer membrane fibronectin-binding protein [Campylobacter concisus 13826] Length = 337 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283 +I + D FD S P+ ++K+ + + + + GHTD+ Sbjct: 225 VIVLRDLDVNFAFD--SYKVGPKYAAEIKKVADFMGEHPDYKVVLAGHTDSV---GAEAY 279 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N +LS RA + +VL GV + +IS + G+ + + + NRR++ Sbjct: 280 NQKLSEKRAKAVAEVLAGYGVEKAKISTV-GYGELKPIATNKTKEGRAQNRRVE 332 >gi|146301218|ref|YP_001195809.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155636|gb|ABQ06490.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 645 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + ++D + FD P+ I L K+ ++ I I HTD+ R N Sbjct: 526 VEMVDVQ-PIYFDYDKYDITPKAIEELTKVVFIMQKFPNIKIKIESHTDS---RGKDSYN 581 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDIL 337 +LS +RA S ++ G+ RI G+ RL ++ + NRR D + Sbjct: 582 LKLSDNRAKSTRDYILSQGIDASRIESAIGYGESRLINKCKNGVKCTEEEHLLNRRSDFI 641 Query: 338 VEDR 341 + + Sbjct: 642 IIQK 645 >gi|7532784|gb|AAF63228.1| outer membrane protein [Acinetobacter sp.] Length = 368 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + R + N RLSL RA Sbjct: 250 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIEGHTDNTGPRAL---NERLSLARA 306 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + ++ + NRR+ Sbjct: 307 NSVKSSLVNEYNVDASRL-STQGFAWDQPIADNNTKEGRAMNRRV 350 >gi|332140499|ref|YP_004426237.1| Thrombospondin type 3 repeat:OmpA/MotB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550521|gb|AEA97239.1| Thrombospondin type 3 repeat:OmpA/MotB [Alteromonas macleodii str. 'Deep ecotype'] Length = 218 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 IID + F +S+ LPE LQ + + L + + I GH A N Sbjct: 99 QIIDSFKVNIEFTSNSTDVLPEYENNLQDVIDALNANPNSGVIIHGHAS---LDGDAAYN 155 Query: 285 WRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 RLS RA + +LM K+ ++ RI+ + G+ R + S+ N+ NRRI+ Sbjct: 156 QRLSERRAKAVASLLMTKADIAPRRITAV-GYGESRPLVNEESEAANARNRRIE 208 >gi|218676173|ref|YP_002394992.1| outer membrane protein OmpA [Vibrio splendidus LGP32] gi|218324441|emb|CAV25864.1| outer membrane protein OmpA [Vibrio splendidus LGP32] Length = 353 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 7/110 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287 + + MF+ +S+ E L + EVL +++ GHTD++ A N + Sbjct: 225 TESFSQGMFETNSTELSSEGKTALIPLVEVLQAHPQSSVNVVGHTDST---GAAEYNMMI 281 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 S RA + + + G++ DRI+ SG ++ + NRR+D Sbjct: 282 SKKRAAAVAAYIEEQGIAADRIAA-SGEGEENPVASNATAEGRAQNRRVD 330 >gi|260557183|ref|ZP_05829399.1| outer membrane protein omp38 [Acinetobacter baumannii ATCC 19606] gi|75438841|sp|Q6RYW5|OMP38_ACIBA RecName: Full=Outer membrane protein omp38; AltName: Full=Outer membrane protein ompA; AltName: Full=Outer membrane protein ompAb; Flags: Precursor gi|40287452|gb|AAR83911.1| outer membrane protein A [Acinetobacter baumannii] gi|260409289|gb|EEX02591.1| outer membrane protein omp38 [Acinetobacter baumannii ATCC 19606] Length = 356 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346 Query: 342 Q 342 Q Sbjct: 347 Q 347 >gi|269963902|ref|ZP_06178214.1| putative lipoprotein [Vibrio harveyi 1DA3] gi|269831389|gb|EEZ85536.1| putative lipoprotein [Vibrio harveyi 1DA3] Length = 219 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I G+TD++ Sbjct: 95 VQVERVGENQLLLRMENGIGFSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST 154 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N LS RA S Q L+ V+ R G+ + + NRR Sbjct: 155 ---GSDSYNQTLSERRAESVRQYLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRR 210 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 211 VEIQILPLK 219 >gi|262375710|ref|ZP_06068942.1| type VI secretion system OmpA/MotB [Acinetobacter lwoffii SH145] gi|262309313|gb|EEY90444.1| type VI secretion system OmpA/MotB [Acinetobacter lwoffii SH145] Length = 217 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P L K+ +VL + I + G+TD++ N LS RA S Sbjct: 113 FDTNKSNIKPNFYGTLNKVAQVLTEDNQSGILVTGYTDST---GNDSINLPLSQARANSV 169 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L GVS RI+ G + NRR++I V Sbjct: 170 ATYLAGQGVSRTRINA-QGLGSANPIADNTTAAGKEQNRRVEIAV 213 >gi|296122828|ref|YP_003630606.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] gi|296015168|gb|ADG68407.1| OmpA/MotB domain protein [Planctomyces limnophilus DSM 3776] Length = 296 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 26 TPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 G+WK+ YADF+T +MAFFLVMW++ + K A+ YF P + Sbjct: 2 AGGGGGAWKVAYADFVTAMMAFFLVMWLVG-QSKEVKTAVAHYFQPPPGAAAAELDPDVE 60 Query: 86 EQNPPERSSQN 96 P R+ Sbjct: 61 PSLFPPRAELK 71 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA--RDNWRLSLDRAY 293 +F + + I L+ + L I IRGH + D W+LS R+ Sbjct: 87 LFAEKAYALDESAINQLEALLPDLLGKPNKIEIRGHASRRERADTQTKEDPWQLSWMRSQ 146 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILV 338 + L+ GV R+ ++S A + N R+++ + Sbjct: 147 AVKDFLVSKGVELGRL-RLSQDGAEEPYSAKKLDAEHQAQNARVEVFL 193 >gi|184159409|ref|YP_001847748.1| outer membrane protein [Acinetobacter baumannii ACICU] gi|332876249|ref|ZP_08444024.1| outer membrane protein Omp38 [Acinetobacter baumannii 6014059] gi|183211003|gb|ACC58401.1| Outer membrane protein [Acinetobacter baumannii ACICU] gi|322509321|gb|ADX04775.1| Outer membrane protein omp38 precursor [Acinetobacter baumannii 1656-2] gi|323519348|gb|ADX93729.1| Outer membrane protein [Acinetobacter baumannii TCDC-AB0715] gi|332735521|gb|EGJ66573.1| outer membrane protein Omp38 [Acinetobacter baumannii 6014059] Length = 356 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 346 Query: 342 Q 342 Q Sbjct: 347 Q 347 >gi|156976618|ref|YP_001447524.1| hypothetical protein VIBHAR_05392 [Vibrio harveyi ATCC BAA-1116] gi|156528212|gb|ABU73297.1| hypothetical protein VIBHAR_05392 [Vibrio harveyi ATCC BAA-1116] Length = 207 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 77/196 (39%), Gaps = 14/196 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--I 211 D+ ++ + + + P + + + + G+++ + Sbjct: 19 NSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFL 78 Query: 212 VKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268 + + T +G ++I + +Q + F S+ L ++ +Q +G LA + + I Sbjct: 79 NRHQIAHETISGEHLMIRLKEQVH---FQTGSARLLAQSQDWIQSLGHYLAGRTDVDVVI 135 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GH D++ + LS RA + L+ + + R+ GF + + ++ + Sbjct: 136 DGHADSTGAASFNDS---LSEKRAREVEKQLLATSLPRQRVFS-RGFGEYVPQCSNATAS 191 Query: 329 SA--NRRIDILVEDRQ 342 NRR+++++ Q Sbjct: 192 GKACNRRVELMLIVDQ 207 >gi|152988440|ref|YP_001349604.1| hypothetical protein PSPA7_4250 [Pseudomonas aeruginosa PA7] gi|150963598|gb|ABR85623.1| probable outer membrane lipoprotein [Pseudomonas aeruginosa PA7] Length = 159 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P++ L KI L + + + GHTD + + N +LS RA Sbjct: 53 KVLFGNNLDRLNPDSRTTLTKIARALLDVGIDKVRLEGHTDN--YGDEGY-NLKLSERRA 109 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S V ++G+ I + G R + S NRR+ I+V Sbjct: 110 ESVAAVFREAGMPAANIE-VRGLGMSRPVADNKTRAGRSENRRVAIIV 156 >gi|291286826|ref|YP_003503642.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883986|gb|ADD67686.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 368 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS + + + + S I I+GH D+ R N LS RA S Sbjct: 266 FKTNSSEIDESYVDDIILFVKFMKDSPAINIEIQGHADS---RGTDDYNMVLSEKRAKSV 322 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILV 338 ++L K G++E+RI + G+ + +D P N NRRID ++ Sbjct: 323 AKMLTEKYGIAENRI-SVIGYGETKPIAPNDSPENMRKNRRIDTVI 367 >gi|163866832|gb|ABY47586.1| outer membrane protein A [Acinetobacter baumannii] Length = 334 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331 >gi|149190355|ref|ZP_01868628.1| outer membrane protein [Vibrio shilonii AK1] gi|148835844|gb|EDL52808.1| outer membrane protein [Vibrio shilonii AK1] Length = 219 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 14/144 (9%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIGEVLAH 261 D K + E +G+ + + + FD +S L+ + +L Sbjct: 80 DQQEKALRQELLNSGVQVERVGDNQLLLRLENGIGFDSNSHALNSSIHNTLRGVARILVE 139 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I G+TD++ A+ N LS RA L+ V+ R G Sbjct: 140 YPNTSLVIEGYTDST---GSAQYNQELSEKRAEQVRSFLISQNVAAGRAVA-RGNGERFP 195 Query: 321 KIASDPMNSA--NRRIDILVEDRQ 342 ++ NRR++I + + Sbjct: 196 ICSNSTPEGRQCNRRVEIKILPLK 219 >gi|37527138|ref|NP_930482.1| hypothetical protein plu3255 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786572|emb|CAE15629.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 575 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 236 MFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + T V++ + + A +I I GHTD++ A N LSL RA + Sbjct: 444 LFDVGQAKLKAGSTKVLVNALINIRAKPGWMILIAGHTDST---GDATKNQVLSLARAEA 500 Query: 295 AYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +L S +S + + G + +ANRR++I Sbjct: 501 VRDWMLQTSDISPACFT-VQGKGATSPIATNTTAAGRAANRRVEI 544 >gi|332881152|ref|ZP_08448812.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680901|gb|EGJ53838.1| V-type H(+)-translocating pyrophosphatase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 920 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 13/212 (6%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD- 194 ++ + +G+ LE +I E + E + + L D Sbjct: 716 GGHTADANGMPVEAQIRQGEAETDMIPLEPAIEVVEGVLNADGNFEYNVGDLFQLNLFDN 775 Query: 195 --LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 L +S+ + LV K + I++ + F + + L Sbjct: 776 TMLEVGENSSEARLVKLLEDKNLTTSEQFKDNWITL----DRTYFKTGNDELTEGSEQQL 831 Query: 253 QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + I +L + I + G+TD + A N +LS RA S L+ G ++ ++S Sbjct: 832 KNIVAILKAYPKAAIRLGGYTDNT---GSAEGNLKLSERRANSVLNKLVALGANKAQLSA 888 Query: 312 ISGFAHHR--LKIASDPMNSANRRIDILVEDR 341 A H +D + NRRID+ + + Sbjct: 889 QGYGAEHPICPANDTDECKAKNRRIDVRLTAK 920 >gi|269963652|ref|ZP_06177975.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831665|gb|EEZ85801.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 218 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 14/196 (7%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN--I 211 D+ ++ + + + P + + + L G+ + + Sbjct: 30 NSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYASTPRYVAQAPSAMGKKLQGVTSLEMFL 89 Query: 212 VKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISI 268 + + T +G +++ + +Q + F S+ ++ L+ +G LA + + I Sbjct: 90 NRHQIAHETISGDHLMVRLKEQVH---FQTGSARLSSQSEDWLRNLGHYLAGRTDVDVVI 146 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GH D++ LS RA + L+ + + R+ GF + + ++ + Sbjct: 147 DGHADSTGAATFNDS---LSEKRAREVEKQLLATSLPRQRVFS-RGFGEYVPQCSNATAS 202 Query: 329 SA--NRRIDILVEDRQ 342 NRR+++++ Q Sbjct: 203 GKACNRRVELMLIVDQ 218 >gi|160874266|ref|YP_001553582.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195] gi|160859788|gb|ABX48322.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|315266500|gb|ADT93353.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 369 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + + F S++ ++++ L + E + I GH N LS Sbjct: 251 EDVGSIQFANDSAVVKKVFYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 307 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA + Q+L++ G+S+ R++ +G+ + +A D +ANRRI+ +V Sbjct: 308 DKRADAVAQILVEKYGISQSRVTS-NGYGVTQPLVAGDSKEAYAANRRIEAIVTT 361 >gi|325123365|gb|ADY82888.1| putative outer membrane protein precursor (OmpA-like) [Acinetobacter calcoaceticus PHEA-2] Length = 347 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + + N RLSL RA Sbjct: 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 278 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 279 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 337 Query: 342 Q 342 Q Sbjct: 338 Q 338 >gi|299768851|ref|YP_003730877.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter sp. DR1] gi|298698939|gb|ADI89504.1| Outer membrane porin F precursor (Root adhesin) [Acinetobacter sp. DR1] Length = 347 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + + N RLSL RA Sbjct: 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNT---GPRKLNERLSLARA 278 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI--------DILVEDR 341 S L+ + V R+ GFA + + + NRR+ ++V+ Sbjct: 279 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVVQPG 337 Query: 342 Q 342 Q Sbjct: 338 Q 338 >gi|255035577|ref|YP_003086198.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254948333|gb|ACT93033.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 433 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S LP + L+ + +VL + + I GHTDA N +LS+ RA + Sbjct: 331 FNVNSDEILPLSYGALKDVAQVLQENPGVKVQIVGHTDAD---GSDESNVQLSMRRAEAV 387 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 + + + R+ + G ++D + NRR++ + Sbjct: 388 KKAMEAHFAIDGTRL-QTDGKGESSPIDSNDTPTGKANNRRVEFI 431 >gi|167625617|ref|YP_001675911.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355639|gb|ABZ78252.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 224 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAH 261 + +++ TR+G I I++ N F + VL + V L + Sbjct: 85 VQEAELRKLLQSSGVSVTRSGDNI-ILNMPNDVTFGVDQTDLSQRAQQVLNSVVLVALEY 143 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +++ G+TD+ N RLS RA L V R++ G + Sbjct: 144 DETKLNVMGYTDS---SGAESYNLRLSQVRASEVANYLTNHKVPAQRVAS-HGMGESKPI 199 Query: 322 IASDP--MNSANRRIDILV 338 ++ + NRR++I++ Sbjct: 200 ASNQTKQGRAENRRVEIIL 218 >gi|89068018|ref|ZP_01155435.1| OmpA family protein [Oceanicola granulosus HTCC2516] gi|89046257|gb|EAR52314.1| OmpA family protein [Oceanicola granulosus HTCC2516] Length = 218 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE +L + E S+ GHTD N RL RA + Sbjct: 73 FAFDSANLGPEARAILDVQASWINQFPELRFSVYGHTD---LVGSDAYNRRLGERRARAV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR 333 L GVS DR+ + F + + DP + NRR Sbjct: 130 VAYLASRGVSTDRLEALVSFGETQPLVLTQDPERA-NRR 167 >gi|312198597|ref|YP_004018658.1| OmpA/MotB domain protein [Frankia sp. EuI1c] gi|311229933|gb|ADP82788.1| OmpA/MotB domain protein [Frankia sp. EuI1c] Length = 371 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S++ L + L T + GHTD++ A N LSL RA +A Sbjct: 269 FASDSAVLSDRDRAALDLVAAALRAGTAPALVAGHTDST---GPASLNEALSLGRAQAAV 325 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L+ GV R+ + G+ R A+ +ANRR++I+ Sbjct: 326 GYLVSQGVPAGRLRAV-GYGASRPAADNATPAGRAANRRVEIV 367 >gi|254785076|ref|YP_003072504.1| outer membrane protein and related peptidoglycan-associated [Teredinibacter turnerae T7901] gi|237687207|gb|ACR14471.1| putative outer membrane protein and related peptidoglycan-associated [Teredinibacter turnerae T7901] Length = 472 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 17/208 (8%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q SE ++ ++ D K+ + + L + + +R K+ ++ Sbjct: 273 DQGSEVPVAAIINRIQQLTADSHELDELKARYAQLDQEFAALETKVGIQSERLKQEEEAR 332 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 +++ D + + +LI ++ FD S+ +LQK+ Sbjct: 333 ERLRRVSDYFRRDEA----MVLSQGDNVLIRMVGLN----FDPGSAQVNASNYALLQKVE 384 Query: 257 EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM--KSGVSEDRISKIS 313 + + + + GHTD+ + N LS DRA + Q L+ + ++ I Sbjct: 385 QAVRMYPGYTVVVEGHTDSF---GSTQANQTLSEDRANAVRQYLLVNMNDLAAGAIEA-Y 440 Query: 314 GFAHHRLKIASDP--MNSANRRIDILVE 339 G+ + ++ NRRID+L++ Sbjct: 441 GYGESQPIANNETREGRKRNRRIDVLLK 468 >gi|78484555|ref|YP_390480.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78362841|gb|ABB40806.1| OmpA family protein [Thiomicrospira crunogena XCL-2] Length = 314 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S P+ +L K L + I I G TD+ N +LS +RA + Sbjct: 186 FDLGSYKIRPDQKPILDKDISQLRSLKDHERIVITGFTDSL---GSESSNLKLSWNRAQA 242 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 L++ I + G + NRRI ++ D+Q Sbjct: 243 TKDYLVRKFKYDPASIL-VLGKGEANPVATNKTKEGRKQNRRISFMIMDQQ 292 >gi|283782254|ref|YP_003373009.1| OmpA/MotB domain-containing protein [Pirellula staleyi DSM 6068] gi|283440707|gb|ADB19149.1| OmpA/MotB domain protein [Pirellula staleyi DSM 6068] Length = 282 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 88/248 (35%), Gaps = 14/248 (5%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 + + Q+ + Q + + + ++ + + D Sbjct: 30 QGAFQPPAGTAQSNVFQQQSTALNSQVQDLTRRVGQLDLNNADLHRQLAQADQLKQQYAD 89 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--------ISSTLSGLVADNIVKG 214 + K+ L + + + K++Q L I + S + + V+ Sbjct: 90 QVSLLQKQLGDMASRLKETQTAKAEIDKQVQTLQASTRFRGGASIQANSSATNSLSTVQI 149 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTE-VISIRGHT 272 + + G +I I + +F S P E ++ ++ ++ I I GHT Sbjct: 150 PGIDVRQDGSVIRI-ELPADKLFVTGSLQPTLEAQRIIDEVATAIIRSYPRQRIVIEGHT 208 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA 330 D + N A + L+ +++ + +Q L++ R I+ + ++ + + Sbjct: 209 DNAQAGNPAGAHL-LAYNQSQAVFQQLVQRNSIPVRQLAIAAMGENHPLASNGTEQGRAK 267 Query: 331 NRRIDILV 338 NRRI+I+V Sbjct: 268 NRRIEIVV 275 >gi|260575964|ref|ZP_05843959.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259021890|gb|EEW25191.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 650 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + EVL + + I GHTDA N LS RA + Sbjct: 503 FAPGSAEIAASAGKTLDALAEVLIKCPDLRLEIGGHTDAQ---GSTEGNRALSQARAEAV 559 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 L ++ + G+ + + D ANRRI+ Sbjct: 560 LLGLQGRRAPVAGLTAV-GYGEDKPLADNGTDEGREANRRIE 600 >gi|126741160|ref|ZP_01756841.1| OmpA/MotB domain protein [Roseobacter sp. SK209-2-6] gi|126717797|gb|EBA14518.1| OmpA/MotB domain protein [Roseobacter sp. SK209-2-6] Length = 140 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + L + + T + I GHTD+ A+ N RLSL RA Sbjct: 39 FDFDSATLRSDQKPKLANMCTSMKAMTGTVFQIIGHTDS---SGSAKYNERLSLLRAQEV 95 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L+ S GV+E+ + I G +DP NRR++ Sbjct: 96 RRHLISSCGVAENSLRAI-GMGETAPFNQNDPRADENRRVE 135 >gi|126732859|ref|ZP_01748650.1| OmpA family protein [Sagittula stellata E-37] gi|126706635|gb|EBA05709.1| OmpA family protein [Sagittula stellata E-37] Length = 227 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 10/140 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + + V T + I+ +F S+ + +Q + + + Sbjct: 92 EAELRQQLGSQVDIRNTGDRL---IVTMPQDILFATDSATLSGGLLGDIQDVAQSVLRYP 148 Query: 264 EVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I GHTD+ A N LS RA + V + V RI ++ G + Sbjct: 149 NTTTQIIGHTDSD---GDAAYNLSLSQRRAQAVANVFLAQNVPSSRI-QVIGRGEDQPIA 204 Query: 323 AS--DPMNSANRRIDILVED 340 ++ NRR++I++ Sbjct: 205 SNLTPQGKQQNRRVEIVILP 224 >gi|115352534|ref|YP_774373.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115282522|gb|ABI88039.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 232 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + ++ S+ G+TD++ A+ N LS +RA S Sbjct: 125 FATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGYTDST---GSAQLNQTLSQNRAQSV 181 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 182 VNALAQRGVAGGRLSA-QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQ 229 >gi|227540101|ref|ZP_03970150.1| outer membrane protein, peptidoglycan-associated lipoprotein [Sphingobacterium spiritivorum ATCC 33300] gi|227239962|gb|EEI89977.1| outer membrane protein, peptidoglycan-associated lipoprotein [Sphingobacterium spiritivorum ATCC 33300] Length = 671 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D S + VL ++ L + I + HTD+ R A+ N +LS +RA SA Sbjct: 563 YDLDKSNIREDAKPVLNQLVHTLRDNPSLKIELSSHTDS---RATAKYNMKLSQNRAQSA 619 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNSANRRIDILVED 340 ++ G++ +RI G+ RL +D + ANRR +I V + Sbjct: 620 VDYIVSQGIARNRIIA-KGYGESRLINMCKDGVKCTDAEHQANRRTEIKVLE 670 >gi|302341627|ref|YP_003806156.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] gi|301638240|gb|ADK83562.1| OmpA/MotB domain protein [Desulfarculus baarsii DSM 2075] Length = 361 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ PE+ LQ+I +LA I + GHTD N LS RA + Sbjct: 259 FDFDKAVVKPESRPTLQEIAALLAADPALEILVVGHTDNQ---GGFAYNVELSQRRAQAV 315 Query: 296 YQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337 + L GV+ R++ +G A S+ + NRR++++ Sbjct: 316 VKALTGDFGVAPGRLTPFGAGMAAPTASNDSEEGRAKNRRVELV 359 >gi|193885364|pdb|3CYP|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256). gi|193885365|pdb|3CYP|C Chain C, The Crystal Structure Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256). gi|193885366|pdb|3CYP|D Chain D, The Crystal Structure Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256). gi|193885367|pdb|3CYP|E Chain E, The Crystal Structure Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256). gi|193885368|pdb|3CYQ|B Chain B, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885369|pdb|3CYQ|C Chain C, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885370|pdb|3CYQ|D Chain D, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885371|pdb|3CYQ|E Chain E, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885372|pdb|3CYQ|F Chain F, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885373|pdb|3CYQ|G Chain G, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885374|pdb|3CYQ|H Chain H, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885375|pdb|3CYQ|I Chain I, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885376|pdb|3CYQ|A Chain A, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885377|pdb|3CYQ|J Chain J, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885378|pdb|3CYQ|K Chain K, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885379|pdb|3CYQ|L Chain L, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885380|pdb|3CYQ|M Chain M, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885381|pdb|3CYQ|N Chain N, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885382|pdb|3CYQ|O Chain O, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|193885383|pdb|3CYQ|P Chain P, The Crystal Structure Of The Complex Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) With N-Acetylmuramic Acid gi|302148709|pdb|3IMP|B Chain B, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148710|pdb|3IMP|C Chain C, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148711|pdb|3IMP|D Chain D, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148712|pdb|3IMP|E Chain E, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148713|pdb|3IMP|A Chain A, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148714|pdb|3IMP|F Chain F, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148715|pdb|3IMP|G Chain G, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148716|pdb|3IMP|H Chain H, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148717|pdb|3IMP|I Chain I, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148718|pdb|3IMP|J Chain J, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148719|pdb|3IMP|K Chain K, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) gi|302148720|pdb|3IMP|L Chain L, New Crystal Form Of The C-Terminal Domain Of Helicobacter Pylori Motb (Residues 125-256) Length = 138 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQ 297 S + ++ +++I +++ + I++RG TD +P + + ++ L+ +RAY + Sbjct: 12 SDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMK 71 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDIL 337 VL++ GV+ +++ S + +D N R++I Sbjct: 72 VLIQYGVNPNQL-SFSSYGSTNPIAPNDSLENRMKNNRVEIF 112 >gi|91785192|ref|YP_560398.1| OmpA family outer membrane protein [Burkholderia xenovorans LB400] gi|91689146|gb|ABE32346.1| outer membrane protein, OmpA family [Burkholderia xenovorans LB400] Length = 267 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S++ P L + + G+TDA+ N LS RA + Sbjct: 164 FATDSAVLSPIAKKNLDDFMRA-NQGVNLHRVMVVGYTDAT---GSEAHNLNLSQARAAA 219 Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILVE 339 Q L G+ ++ +++ G A A+ NRR+D+ V Sbjct: 220 VVQYLRDGGLRAEQFVARGLGSADPVASNATAEGRMQNRRVDVRVL 265 >gi|172061391|ref|YP_001809043.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171993908|gb|ACB64827.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 215 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +L + L + ++ S+ G+TD++ A+ N LS +RA S Sbjct: 108 FATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGYTDST---GSAQLNQTLSQNRAQSV 164 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 L + GV+ R+S G A++ + NRR++I + Q Sbjct: 165 VNALAQRGVAGGRLSA-QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQ 212 >gi|87121335|ref|ZP_01077225.1| probable outer membrane protein [Marinomonas sp. MED121] gi|86163492|gb|EAQ64767.1| probable outer membrane protein [Marinomonas sp. MED121] Length = 298 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289 R+ +F ++ + L + +A+ V I I GHTD+ RDN LS Sbjct: 187 RSAVLFPENGVLLSTRMKDRLDLVALYVANDPSVEYIYIDGHTDSL---GSRRDNRELSK 243 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVE 339 RA + L++ GV ++I + NRR+ I +E Sbjct: 244 QRAEAVTAYLLEQGVEVEKIIS-RYHGERYPTIDNKTRANRERNRRVTIRLE 294 >gi|329964410|ref|ZP_08301491.1| OmpA family protein [Bacteroides fluxus YIT 12057] gi|328525459|gb|EGF52507.1| OmpA family protein [Bacteroides fluxus YIT 12057] Length = 252 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS E L+++ ++L I+I GHTD N ++S +RAYS Sbjct: 140 LFAFNSSALSNEAKSSLRELAQILKEDPTTDIAIIGHTDKV---GTYEANMKVSKNRAYS 196 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L GVS + K+ G + + NRR++I Sbjct: 197 VENYLQDCGVSPAQFKKVEGVGYTE--YDDNLSADQNRRVEI 236 >gi|317486290|ref|ZP_07945122.1| OmpA family protein [Bilophila wadsworthia 3_1_6] gi|316922460|gb|EFV43714.1| OmpA family protein [Bilophila wadsworthia 3_1_6] Length = 340 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 4/105 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F PE +L + ++ + + G TD+ A N +LS RA + Sbjct: 239 FAFDKYDLTPEAQGILNEAARIIMEHPNMKVQLLGWTDS--IGTDAY-NLKLSQRRADAV 295 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 L+ GV R+ I R ++ NRR +++ D Sbjct: 296 KNYLVAQGVPASRMIAIGKGKSFRYDNNTEEGRYMNRRTELVFMD 340 >gi|221196013|ref|ZP_03569060.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221202687|ref|ZP_03575706.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221176621|gb|EEE09049.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221182567|gb|EEE14967.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 405 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +R LA+ + L VA V+ + ++ R MF + Sbjct: 252 EAQRLSPFDALARNLERRLRDEVAAGNVELIRDPAHH------VLTLRFAGMFVPGAVTV 305 Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301 P V+ G +A E V+ + G+ D++P + + N +S RA ++L+ Sbjct: 306 APWGASVVASAGREIASIAEGAVVRVVGYADSAPAGSARQISNQAISEARAEDVARILVA 365 Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 +GV ++ G + + + NRR++++V Sbjct: 366 AGVPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403 >gi|124003926|ref|ZP_01688773.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123990505|gb|EAY29985.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 489 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L ++ VL E + I+GHT +N +LS DRA L+K+G++ Sbjct: 394 AKAYLNQVVNVLKKYPEIELEIQGHTCD--ISQSEANNQQLSEDRAQKVKAYLVKNGINA 451 Query: 307 DRISKISGFAHHRLKIASDPM--NSANRRIDI-LVEDRQ 342 R++ +GF + +D NRR+ +V+D++ Sbjct: 452 QRLT-TTGFGSKQPAFPNDDYYNRVRNRRVQFKVVKDKK 489 >gi|110639097|ref|YP_679306.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281778|gb|ABG59964.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 648 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIR 269 + V+ + T T I+ + T F+ + + E L ++G L H + I Sbjct: 521 VKDSVIHKVTDTIKTIAAAEIAKTVYFESNRADLNAEAKTELNQLGIYLDTHKEANVYIS 580 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH DA + A +N LS RA +A L G+S RI K+ F + + Sbjct: 581 GHADA--LGSAAINN-ALSQKRAQAAAVYLKAKGISAARI-KVESFGSEKPVETNATVEG 636 Query: 328 NSANRRIDILVE 339 + NRR+ I+V+ Sbjct: 637 RAKNRRVQIVVK 648 >gi|163866826|gb|ABY47583.1| outer membrane protein A [Acinetobacter baumannii] Length = 343 Score = 70.3 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331 >gi|94311184|ref|YP_584394.1| OmpA/MotB [Cupriavidus metallidurans CH34] gi|93355036|gb|ABF09125.1| putative outer membrane lipoprotein [Cupriavidus metallidurans CH34] Length = 167 Score = 70.3 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K F T G ++ + +F E L ++ L + + + + Sbjct: 41 VLKNQGFMLTGNG--WELV-MPDKVLFGFDDDTVSAEQQNALARVARTLRDAGIDALRVD 97 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD N +LS+ RA + +VL+ G + D + + GF R + Sbjct: 98 GHTDNV---GTIEYNQQLSMRRAEAVARVLLTCGFARDHLD-VRGFGKTRPIADNGTALG 153 Query: 328 NSANRRIDILV 338 + NRR+ I+V Sbjct: 154 RAENRRVAIIV 164 >gi|330899613|gb|EGH31032.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 133 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 3 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYT 61 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GV + + + G + ++ + Sbjct: 62 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASNADVNGRAQ 117 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 118 NRRVEVNLKPIPG 130 >gi|129307154|gb|ABO30515.1| outer membrane protein A [Acinetobacter baumannii] Length = 340 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 231 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 287 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + + + NRR+ Sbjct: 288 NSVKSALVNEYNVDASRL-STQGFAWDQPIADNKTKEGRAMNRRV 331 >gi|88860422|ref|ZP_01135060.1| putative Component of sodium-driven polar flagellar motor [Pseudoalteromonas tunicata D2] gi|88817620|gb|EAR27437.1| putative Component of sodium-driven polar flagellar motor [Pseudoalteromonas tunicata D2] Length = 290 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 8/102 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 SS E+ L KIGE L + + + I +TD+ N LS RA + Sbjct: 190 SSELTKESKKRLDKIGEYLKNDPNIESVLISAYTDSY---GGRYTNDELSKKRALTIKTY 246 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + + GV + R+ + GF R + NRR+ I + Sbjct: 247 MTELGVEDKRVE-VEGFGEKRHIAPNTTILGRQLNRRVVIQI 287 >gi|254450200|ref|ZP_05063637.1| OmpA domain protein [Octadecabacter antarcticus 238] gi|198264606|gb|EDY88876.1| OmpA domain protein [Octadecabacter antarcticus 238] Length = 656 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F SS+ +I + + V+ A + + + GHTD+ N LS DRA Sbjct: 545 FLSSSARLDATSIRTINALAAVVLPCAAADLTLEVGGHTDS---SGDELTNNALSQDRAN 601 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + L+ GV E+ ++ GF + A+ +ANRR DI Sbjct: 602 AVRAALIVRGVPENAMTA-FGFGPTQPITDNATPEGRAANRRTDI 645 >gi|183984604|ref|YP_001852895.1| outer membrane protein a OmpA [Mycobacterium marinum M] gi|183177930|gb|ACC43040.1| outer membrane protein a OmpA [Mycobacterium marinum M] Length = 332 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P++ VL ++ + L + +++ G+TD N LS RA + Sbjct: 231 FGNDGVSLTPDSNKVLTQVVDKLRACPDAKVTVNGYTDN---SGSEGLNIPLSAQRAQTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L+ GV D I+ G ++D NRR++I+V Sbjct: 288 ADFLVAHGVPTDHITA-KGLGSANPIASNDTAEGRIKNRRVEIVV 331 >gi|323698017|ref|ZP_08109929.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323457949|gb|EGB13814.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 240 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 9/128 (7%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 + + +++ R FD +S PE+ L +IG+V+ S ++ + G D S Sbjct: 117 VVREAPGRVRVTL---RGDLFFDGNSGRLKPESAAYLDEIGDVVRLSVGLVHVIGFADQS 173 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANR 332 ++ LS +RA S L+ G+ R+ I+G ++ ++ + NR Sbjct: 174 --EAEGSSSFTLSSERAASVADQLITRLGIEPKRLV-ITGRGAYQPELPDTSAANQTLNR 230 Query: 333 RIDILVED 340 R++I++ + Sbjct: 231 RVEIVIAN 238 >gi|153870010|ref|ZP_01999498.1| OmpA/MotB [Beggiatoa sp. PS] gi|152073520|gb|EDN70498.1| OmpA/MotB [Beggiatoa sp. PS] Length = 296 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L+ + + I + GHTD+ N +LS RA S Sbjct: 189 FAFDKAALTPQAKTTLEGLINEFGLDFIKGIEVIGHTDSI---GKDSYNQKLSEQRAASV 245 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + L V+ +I+ G +D + NRR++I +E Q Sbjct: 246 VRYLQVLNVNTSKING-WGEGERNPVAPNDTREGRAQNRRVEIKIEPFQ 293 >gi|325277836|ref|ZP_08143389.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] gi|324097047|gb|EGB95340.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] Length = 830 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 24/163 (14%) Query: 196 AKKISSTLSGLVADNI-----VKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLP 246 A +I T + DN + + + I I + +F + Sbjct: 668 ADQIRETDVPRILDNAFLISSSRNYIDSLRAQSLRAIETITLESDTLFAFGRADFQSLKS 727 Query: 247 ETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 E L I L ++ I I GH D ++ N ++S RA + L+ GV Sbjct: 728 EGQNQLSAIASKLLNTPNIGKIVISGHADQL---GDSQSNLQVSKQRAQTIRTYLVGKGV 784 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + + G + + D + NRR++I V Sbjct: 785 PAELVVA-QGEGSRKPLVNCDMQQARAQLIKCLEPNRRVEIEV 826 >gi|315186730|gb|EFU20488.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578] Length = 826 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 83/263 (31%), Gaps = 21/263 (7%) Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 L + V +K + + ++ + ++ + K + Sbjct: 569 ESAPLPVWVDTVPPEVSVKTEPVPFSPDGDGRDEVVAFIPEVRDESGIESWELVIANKDR 628 Query: 156 DLCKSTDLEKSINKE-ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 S D E + +F E+ + DL ++ + +V D Sbjct: 629 KQTFSEDGEPPARIVWDGFFESGDLAEQAHDYPVAFTVTDLGGNVAKASALVVTD----- 683 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV----VLQKIGEVLAHST-EVISIR 269 V G IS+ D P + E L ++ +L + + Sbjct: 684 VYVVIKDGGAYISVPDIHFAPFTADYTDKVPSEIREENLRTLDEVAAMLKKFPQYTVQLE 743 Query: 270 GHTDASPFRNIARDNWR-------LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 GH + + + R LS RA + + L+ GV R+ I G+ R + Sbjct: 744 GHAVSLLWFDPERAKVEHQEVLVPLSRARAEAVRKALISRGVDPSRL-SIVGYGGSRPIV 802 Query: 323 ASDPMNSA--NRRIDILVEDRQG 343 + NRR++ L++++ G Sbjct: 803 PFSDLKKRWVNRRVEFLLKEKSG 825 >gi|260426127|ref|ZP_05780106.1| OmpA domain protein [Citreicella sp. SE45] gi|260420619|gb|EEX13870.1| OmpA domain protein [Citreicella sp. SE45] Length = 649 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 10/265 (3%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 I + N + + T R ++ Y + + Sbjct: 345 IPEASNQGPPEFTATLSPEGSVQLRGRVHSEIARQTADSFARARFGSDAVYTAARVDPDL 404 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 N R + L + ++ + + A L + Sbjct: 405 PANWSARVLAGLEALGELSNGVVRVTPDMVTVSGNTGSTDANAEISGLLADKLGQGAEFE 464 Query: 203 LSGLVADNIVKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 ++ L + + + T ++ I+ R F+ S+ V+ I E+L Sbjct: 465 INVLYQEKLDPTLGIPTPDECEAQIVEIVGDRKIN-FEPGSANLDASAKDVMDDIAELLK 523 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + I+GHTD+ N +LS DRA + L V ++ G+ + Sbjct: 524 LCGDIPLEIQGHTDSQ---GRESMNQQLSQDRAQAVLDALRNRRVLTAS-YRVRGYGEEQ 579 Query: 320 LK--IASDPMNSANRRIDILVEDRQ 342 ++ ANRRI+ + + Sbjct: 580 PIADNKTEEGREANRRIEFRLIRPE 604 >gi|315179972|gb|ADT86886.1| hypothetical outer membrane protein [Vibrio furnissii NCTC 11218] Length = 176 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P +Q + E L I I+G+T N LS RA + Sbjct: 56 LFANDSYEINPVFADQIQAMAEFLKTYQSASIEIQGYTSKV---GTNEYNQELSQKRAEA 112 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 + L+ G+S R+ +I GF RL D + + NRR+ Sbjct: 113 VERKLLSYGISPKRV-RIIGFGETRLLDDGDTNSAHAVNRRVT 154 >gi|216263832|ref|ZP_03435826.1| outer membrane protein [Borrelia afzelii ACA-1] gi|215979876|gb|EEC20698.1| outer membrane protein [Borrelia afzelii ACA-1] Length = 389 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S+ D F S L + L I ++ Sbjct: 253 IETEVENYIQEKKIKAISVEKNTKGINLSL-DIE----FYPDSFQILQKEYKKLDLIAKL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K + ++D+I G+ Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKIKNKDQIL-FKGWG 363 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388 >gi|111114988|ref|YP_709606.1| outer membrane protein [Borrelia afzelii PKo] gi|110890262|gb|ABH01430.1| outer membrane protein [Borrelia afzelii PKo] Length = 389 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S+ D F S L + L I ++ Sbjct: 253 IETEVENYIQEKKIKAISVEKNTKGINLSL-DIE----FYPDSFQILQKEYKKLDLIAKL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K + ++D+I G+ Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKIKNKDQIL-FKGWG 363 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388 >gi|162454745|ref|YP_001617112.1| OmpA-domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161165327|emb|CAN96632.1| OmpA-domain outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 129 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 14/129 (10%) Query: 218 ETTRTGILISIIDQRNTPMF-DKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDA 274 E G I I P+F D PE+ VL + +L E+ +++ GHTD Sbjct: 10 EAVIEGDRIKIA----RPIFYDLDKDEIRPESFSVLDAVANILRTHPEITALTVEGHTDN 65 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPM-NSANR 332 N +LS RA + + L++ GV+ G+ +D + NR Sbjct: 66 Q---GSVEHNIKLSERRANAVVRYLVQRGVATP--MTAPGYGAGAPLCFTNDEGCRAMNR 120 Query: 333 RIDILVEDR 341 R++ ++ + Sbjct: 121 RVEFRIKSK 129 >gi|119774051|ref|YP_926791.1| OmpA/MotB [Shewanella amazonensis SB2B] gi|119766551|gb|ABL99121.1| OmpA/MotB [Shewanella amazonensis SB2B] Length = 368 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS+ P + ++K+ + + I GH AS N N LS RA +A Sbjct: 257 FANNSSVINPSSYESVEKLANYMNQHPGSTVEIGGH--ASNVGNPDY-NMTLSEKRANAA 313 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 ++L++ G+S +R++ G+ R + + +ANRR++ +V Sbjct: 314 AKLLVEKYGISANRVTA-KGYGITRPVMDGNTAEAHAANRRVEAVV 358 >gi|152982349|ref|YP_001354513.1| hypothetical protein mma_2823 [Janthinobacterium sp. Marseille] gi|151282426|gb|ABR90836.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 1376 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 11/123 (8%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIA 281 S+ + + +F + P L + + I++ GHTD A Sbjct: 85 SLQEAKGLSLFVSGKADLTPSAKESLDALVAEIHARKGVIAGMRIAVVGHTDNQGLSPNA 144 Query: 282 R----DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + DN LS RA + L ++ + I G + ++ S NRR+ Sbjct: 145 KRIFTDNQGLSEARALTVAAYLKQALNNPAITYSIDGKGESQPLASNATPEGMSRNRRVA 204 Query: 336 ILV 338 + V Sbjct: 205 LQV 207 >gi|126663141|ref|ZP_01734139.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria bacterium BAL38] gi|126624799|gb|EAZ95489.1| peptidoglycan-associated lipoprotein, OmpA family [Flavobacteria bacterium BAL38] Length = 520 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPF 277 T I+I FD + S E+ + L KI EVL ++ + I+I HTD+ Sbjct: 404 VTDDTIVIE------NIYFDFNKSTVKKESELSLNKIVEVLTNNANMSITINAHTDS--- 454 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRR 333 + N +LS RA +AYQ L+K G+ +++ G+ L + + ANRR Sbjct: 455 KGSEAYNQKLSESRAKAAYQYLLKKGIPASQLT-YKGYGESELLEKCEKCTASQDQANRR 513 Query: 334 IDILV 338 I+ + Sbjct: 514 IEFKI 518 >gi|114562313|ref|YP_749826.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333606|gb|ABI70988.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 225 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 8/132 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K TR G I + N F ++ VL + V + +++ G Sbjct: 96 LKSTGVSVTRNGDNIVLN-MPNEVTFAVDQTVLSSRAKSVLNSVVLVAKEYDDTRLNVIG 154 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--N 328 +TD+ N RLS RA Q + VS R+S +G ++ Sbjct: 155 YTDS---SGSDSYNLRLSQVRASEVAQYMTSQKVSGSRVSS-TGMGESSPIASNSTEQGR 210 Query: 329 SANRRIDILVED 340 S NRR++I++ Sbjct: 211 SQNRRVEIVLTP 222 >gi|152984447|ref|YP_001351357.1| flagellar motor protein [Pseudomonas aeruginosa PA7] gi|150959605|gb|ABR81630.1| flagellar motor protein [Pseudomonas aeruginosa PA7] Length = 254 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 36/187 (19%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET-----TRTGILISIIDQ------RNT 234 M+ +K L++ + L L V+ + + + GI + + + N Sbjct: 44 MEIQKELKERQVQFEQELVELKKAEQVRRTILDEAVEALRKRGIKVEVSENHTVLSIPND 103 Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRN-IARD 283 + FD + +IG+V+ I I GHTD P + + + Sbjct: 104 LLGFDTGAYDIHAAYQARALEIGKVINEVISREDRVEFLDTIFIEGHTDNRPLQGFMGKG 163 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISK-----------ISGFAHHRLKIASDPMNS--- 329 NW LS RA S +Q + ++++++ +SG+ R + Sbjct: 164 NWGLSTFRAISLWQFWGSALSPDEQLARLKNKDGKPLFSVSGYGETRPVLVDQQTEDDFK 223 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 224 RNRRIDI 230 >gi|256828444|ref|YP_003157172.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577620|gb|ACU88756.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 198 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S E+ V I E + + I GH+D DN RLSL+RA A Sbjct: 97 FEFGRSELTAESKPVPPMIIEAITRRNSRDVRINGHSDTI---GQREDNARLSLERAEGA 153 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 +L+K G+ I ++ L I D NRR+++LV Sbjct: 154 RDILIKEGIDPS-IMQVFSHGEGNLLIPTADDTPEPRNRRVEVLV 197 >gi|28868377|ref|NP_790996.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213967171|ref|ZP_03395320.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|301381094|ref|ZP_07229512.1| ompA family protein [Pseudomonas syringae pv. tomato Max13] gi|302062421|ref|ZP_07253962.1| ompA family protein [Pseudomonas syringae pv. tomato K40] gi|302133214|ref|ZP_07259204.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851615|gb|AAO54691.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213928013|gb|EEB61559.1| ompA family protein [Pseudomonas syringae pv. tomato T1] gi|330965011|gb|EGH65271.1| ompA family protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331018068|gb|EGH98124.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIIGYT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SA 330 D++ + N LS RA S L GV + + + G + ++ N + Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQGVDQSHL-SVRGAGPDQPIASNADANGRAQ 213 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 214 NRRVEVNLKPIPG 226 >gi|256824209|ref|YP_003148169.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Kytococcus sedentarius DSM 20547] gi|256687602|gb|ACV05404.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Kytococcus sedentarius DSM 20547] Length = 437 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 235 PM-FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 PM F SS E+ V +IGE LA + + GHTD+ N RLS RA Sbjct: 335 PMRFPSSSDALYGESAVNAARIGEKLAGCDFDVVVVGHTDSV----GGEVNERLSAFRAE 390 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILVE 339 Q L+ +GV DRI + + A + ++ + NRR++ILV+ Sbjct: 391 KIAQALVVAGVDFDRIQQSNASASQPIASNETEDGRAKNRRVEILVK 437 >gi|254415575|ref|ZP_05029335.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420] gi|196177756|gb|EDX72760.1| OmpA family protein [Microcoleus chthonoplastes PCC 7420] Length = 727 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 5/109 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE+ VL ++ VL I ++GHTD P + A N L+ RA + Sbjct: 606 FALDRADISPESAAVLDQVAAVLQEYPFLTIELQGHTD--PRASAAY-NQALARRRALAV 662 Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 L++ GV R++ + G + R + + +RR++I+ +D +G Sbjct: 663 RNYLLRQGVDPGRMTIRSFGESQRRTTGSGVVDYARDRRVEIIFQDLRG 711 >gi|311748659|ref|ZP_07722444.1| outer membrane protein, peptidoglycan-associated lipoprotein [Algoriphagus sp. PR1] gi|126577188|gb|EAZ81436.1| outer membrane protein, peptidoglycan-associated lipoprotein [Algoriphagus sp. PR1] Length = 643 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D + P+ V L K+ ++L + I + HTD R+ N LS RA SA Sbjct: 537 YDLDKADIRPDAAVELDKLVQILKDNPSIKIELSSHTDD---RSSDEYNQDLSQRRAQSA 593 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRIDILVEDRQ 342 ++ G+S DR+ G+ +L I + NRR + V + Q Sbjct: 594 VDYIVSQGISADRLVA-KGYGESQLIIENATTEEEHQTNRRTEFKVIEIQ 642 >gi|237806321|ref|ZP_04593025.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027434|gb|EGI07489.1| OmpA/MotB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 194 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F SS L + L + I I Sbjct: 60 ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 118 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV + + + G + ++ Sbjct: 119 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQTHL-SVRGAGPDQPIASNADVN 174 Query: 327 MNSANRRIDILVEDRQG 343 + NRR+++ ++ G Sbjct: 175 GRAQNRRVEVNLKPIPG 191 >gi|254486323|ref|ZP_05099528.1| OmpA/MotB [Roseobacter sp. GAI101] gi|214043192|gb|EEB83830.1| OmpA/MotB [Roseobacter sp. GAI101] Length = 231 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS +L++ + + GHTDA R N L L RA S Sbjct: 89 FDFNSSQLDAAAQAILRQQANWIRQFPEVRFRVYGHTDAV---GSNRSNKALGLRRARSV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + F + I + ANRR Sbjct: 146 VAFLTTQGISTSRLEAVVSFGETQPLIVTQGRERANRR 183 >gi|308047841|ref|YP_003911407.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307630031|gb|ADN74333.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 716 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 12/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD S+ L ++ LA + ++I GHTD+ N LS RA Sbjct: 53 FDTDSATLSQADQQALTQLAAKLAPMLDGQMALAISGHTDS---AGAEEYNLGLSQRRAQ 109 Query: 294 SAYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMN--SANRRIDILV 338 S Q L + ++ +I F + ++D +ANRR++I + Sbjct: 110 SVAQFLTS--LMPEQHIRIESRYFGETQPLQSNDSARGMAANRRVEITL 156 >gi|258543922|ref|ZP_05704156.1| lipoprotein PlpD [Cardiobacterium hominis ATCC 15826] gi|258520861|gb|EEV89720.1| lipoprotein PlpD [Cardiobacterium hominis ATCC 15826] Length = 256 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 15/114 (13%) Query: 236 MFDKSSSIPLPET-IVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F ++ PE + + +V AH + + G TD A N LS RA Sbjct: 142 LFAFDTATLRPEADRALADLLAKVRAHGDTGEVRVDGFTDRL---GSATYNRELSQARAD 198 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L++ G++ RI + +G + +RR+++ V Sbjct: 199 AVKNYLVRGGIAASRI-RAAGLGSSQPLAHCADSLPRGELIACLQPDRRVEVTV 251 >gi|261414609|ref|YP_003248292.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371065|gb|ACX73810.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327079|gb|ADL26280.1| putative peptidoglycan-associated lipoprotein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 192 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 19/173 (10%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI---LISIIDQRNTP 235 SKEK + + + + L LVAD + L + + + N Sbjct: 22 SKEKPETDPQPQTAPEAPADSTLNLDALVADTLDADSLARLEAERLEAERARLEELINRI 81 Query: 236 M-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSL 289 M FD S +L ++ E+L + ++++ GHTDA R N L Sbjct: 82 MLEDVYFDYDRSELTENAKRLLAQVAEILVNENRFIVTVEGHTDA---RGTEDYNISLGA 138 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANR----RIDI 336 R+ + L+ GV +R+ +S + R K+ + S NR R+ I Sbjct: 139 RRSTVVREFLIAYGVDANRLVSVS-YGKERPKVQGTDETAYSKNRRAHFRVSI 190 >gi|254475411|ref|ZP_05088797.1| OmpA/MotB [Ruegeria sp. R11] gi|214029654|gb|EEB70489.1| OmpA/MotB [Ruegeria sp. R11] Length = 627 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L +I ++LA + I+GHTD+ N LS RA S Sbjct: 499 FEPGSATVAAGSRDTLDQIADILARCDGVRLEIQGHTDSQ---GREEMNQNLSQARAQSV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 L + S G+ +D ANRRI+ Sbjct: 556 LNELRDRRIVTSSFSA-KGYGESTPIATNDTEEGREANRRIE 596 >gi|326772136|ref|ZP_08231421.1| OmpA family protein [Actinomyces viscosus C505] gi|326638269|gb|EGE39170.1| OmpA family protein [Actinomyces viscosus C505] Length = 529 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + VL + E + ++I GHTD N LS RA + Sbjct: 247 FATDSDQLSTQADSVLATVVEQIKKYPSGGELTITGHTDDVA---DDAHNQDLSERRAKA 303 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + L K +SG ++ +D NRR++I + + Sbjct: 304 VSERLKKLTDLSAWKESVSGKGESSPRVPNDTDERRQINRRVEITLTPSK 353 >gi|310815074|ref|YP_003963038.1| OmpA domain protein [Ketogulonicigenium vulgare Y25] gi|308753809|gb|ADO41738.1| OmpA domain protein [Ketogulonicigenium vulgare Y25] Length = 708 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLS 288 N FD S+ ++ V+ + +VL I + G+TD+ A N RLS Sbjct: 502 DENKIAFDPGSAQIAGSSLRVIDAMADVLRGCPVDLPIRVAGYTDSQ---GRAEMNLRLS 558 Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQG 343 DRA + L V + + G A S+ ANRRI + + +G Sbjct: 559 QDRADAVLAALRMRRVPVSSFTAVGFGAADPIASNDSEEGREANRRIAFSLIEEEG 614 >gi|51594942|ref|YP_069133.1| OmpA/OmpF family outer membrane porin [Yersinia pseudotuberculosis IP 32953] gi|51588224|emb|CAH19831.1| putative OmpA/OmpF family outer membrane porin [Yersinia pseudotuberculosis IP 32953] Length = 168 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD E + +QKIG +L+ + + + GHTD+ N +LS R Sbjct: 61 NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ + I + G + + NRR+ I++ Sbjct: 118 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 165 >gi|91787678|ref|YP_548630.1| OmpA/MotB [Polaromonas sp. JS666] gi|91696903|gb|ABE43732.1| OmpA/MotB [Polaromonas sp. JS666] Length = 214 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE L + + + I GHTD+ N +LS+ R+ + Sbjct: 105 FFDFDKSVIKPEGKAKLDDLIGKIKDINLEVIIAVGHTDSV---GSDTYNQKLSVRRSEA 161 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 162 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTAEGRAKNRRVEIEV 206 >gi|229588770|ref|YP_002870889.1| putative lipoprotein [Pseudomonas fluorescens SBW25] gi|229360636|emb|CAY47494.1| putative lipoprotein [Pseudomonas fluorescens SBW25] Length = 261 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 20/236 (8%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 ST + N L + Q+ T+D+ + D +K K+ + Sbjct: 21 STPPNANLENARTNFSALQTNPQATKLAALETKDASEWLDKADKAYRDKEDEKKVDQLAY 80 Query: 177 ------PLSKEKILAMKRKKRLQDLAKKISSTL---SGLVADNIVKGVLFETTRTGILIS 227 ++K+ I+ + + +L++ + + L + + + T G L++ Sbjct: 81 LTNQRVEVAKDTIVLRESEAKLKNAGDERARALLDARDAQIKQLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +F + S +V + K+ + L + + + + G+TD++ N Sbjct: 141 FGD----VLFATNKSDLKSSGLVNITKLAQFLRDNPDRKVIVEGYTDST---GSDSYNQS 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 LS RA S + L + GV RI G+ + + NRR+++ + + Sbjct: 194 LSERRAASVQRALAQQGVDISRIV-TQGYGKEYPVADNGSVSGRAMNRRVEVTISN 248 >gi|144900280|emb|CAM77144.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum gryphiswaldense MSR-1] Length = 319 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + S PE V+ + + T + + GH D + N LSL RA + Sbjct: 217 FFDFNKSDITPEASKVITQAVDTAKKGKTTRVDLTGHADR---SGPDKYNMALSLKRANA 273 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 ++K G+ D+I + G + NRR++I++ Sbjct: 274 VKAAMVKQGIPADQI-SVVGKGEAVPLVQTPDGVREPQNRRVEIVL 318 >gi|261210838|ref|ZP_05925129.1| outer membrane protein A precursor [Vibrio sp. RC341] gi|260840088|gb|EEX66683.1| outer membrane protein A precursor [Vibrio sp. RC341] Length = 309 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 9/114 (7%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + + + +F +SS+ + + L+ +VL + ++I GHTD+ + + Sbjct: 198 VVVFTSSSEKLFSNNSSLLM--STKSLEGPLDVLKKDPKLKVNIVGHTDS--LGSDKYNQ 253 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 W +S RA + + +G+S RI+ + G ++ + NRR++I Sbjct: 254 W-MSERRAKTVADYFIANGISPSRITAL-GRGESEPIANNNSELGRAQNRRVEI 305 >gi|71064857|ref|YP_263584.1| OmpA family outer membrane protein [Psychrobacter arcticus 273-4] gi|71037842|gb|AAZ18150.1| possible outer membrane protein, OmpA family [Psychrobacter arcticus 273-4] Length = 533 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 73/189 (38%), Gaps = 15/189 (7%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 KG + + ++NK + ++A ++A ++++ + + DN+ Sbjct: 306 KGDTITVNAADTAALNKLVSDLQAAAPAMTVIAEGPLNEQTEIADSLTASEAAM--DNLG 363 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 + + + +++ F+ ++ +L + +++ + + I GH Sbjct: 364 QNPDPRDVARALSLQVVN------FEVDKALIPDANKALLDRAVKLMEQVPNMTLMIIGH 417 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNS 329 TD + + A N +LS +RA + L+ G ++ G + D Sbjct: 418 TDKT--ADAAY-NLKLSEERAQAMKAYLVAQGADPSKLM-TKGMGETDPIADNTTDQGRF 473 Query: 330 ANRRIDILV 338 NRRI+ +V Sbjct: 474 RNRRIEFVV 482 >gi|262377497|ref|ZP_06070719.1| outer membrane protein [Acinetobacter lwoffii SH145] gi|262307553|gb|EEY88694.1| outer membrane protein [Acinetobacter lwoffii SH145] Length = 352 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + R + N RLSL RA Sbjct: 235 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIEGHTDNTGPRAL---NERLSLARA 291 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + V R+ GFA + ++ + NRR+ Sbjct: 292 NSVKSSLVNEYNVDASRL-STQGFAWDQPIADNNTKEGRAMNRRV 335 >gi|146276360|ref|YP_001166519.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554601|gb|ABP69214.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 212 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE VL++ + + GHTD A N L L RA + Sbjct: 68 FPFDSARLTPEAQRVLREQANWIRQFPEVRFRVYGHTD---LVGSASYNKSLGLRRAKAV 124 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 G+S R+ + + R I NRR Sbjct: 125 VAFFASQGISPSRLEALVSYGETRPVIPVATPEERNRR 162 >gi|266621919|ref|ZP_06114854.1| putative flagellar motor protein MotB [Clostridium hathewayi DSM 13479] gi|288866392|gb|EFC98690.1| putative flagellar motor protein MotB [Clostridium hathewayi DSM 13479] Length = 283 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 17/216 (7%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + ++ + Q + S + +DL + E + E Sbjct: 41 KLEEIAAAMQRQLGIESTNDLEDVPQDLKYPSISEGAGAPEGEGSQFNTGTGGGARSASS 100 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + D+AK I S D + + + I +N +F S++ + Sbjct: 101 LAMADMAKDIQSYFQMENLDA-----VVSDSENAVYIRF---KNDLLFAPDSAVLQENSK 152 Query: 250 VVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305 +L +G +L + I I GHT A ++ D LS +RA + L G+ Sbjct: 153 SMLDALGIMLKDRQDEIMAIYINGHT-AQAANSLINDRL-LSSERADNVAIYLEDHVGLE 210 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 ++ G+ + + NRR+D+++ Sbjct: 211 PKKLI-CRGYGKYYPIADNSTKEGRELNRRVDMIIL 245 >gi|315125307|ref|YP_004067310.1| outer membrane protein; signal peptide [Pseudoalteromonas sp. SM9913] gi|315013820|gb|ADT67158.1| putative outer membrane protein; signal peptide [Pseudoalteromonas sp. SM9913] Length = 354 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S + + + ++ L + + + GHT A + + W LS RA + Sbjct: 244 FPNNDSSVSQQYLNDIDEVATFLKEYPDTTVLLEGHTSA--VGKASYNKW-LSKKRADAV 300 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + L+ G++EDRI+ +G RLK ++ ++ NRR++ V+ + Sbjct: 301 AKKLIADGIAEDRIT-TAGLGEERLKNEANTAKAHAENRRVEAHVKSIK 348 >gi|300772773|ref|ZP_07082643.1| OmpA family outer membrane protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761076|gb|EFK57902.1| OmpA family outer membrane protein [Sphingobacterium spiritivorum ATCC 33861] Length = 628 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 N F + LP + L + L + I I GHTD + + N LS +R Sbjct: 522 NNIFFALNKYDLLPSSTSDLNTLVLFLQENPLIRIEIGGHTDNT---GNDQLNKTLSDNR 578 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A + L+ G+S +R+ G+ ++ ++ + NRR + + Sbjct: 579 AKAVVSYLIARGISANRLLA-KGYGSNQPLATNETETGKALNRRTEFKI 626 >gi|121605683|ref|YP_983012.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120594652|gb|ABM38091.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2] Length = 210 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ P L + + + I GHTD+ N +LS+ R+ + Sbjct: 102 FFDFDKSVIKPAGKEKLDDLIGKIKDINLEVIIAVGHTDSV---GSDSYNQKLSVRRSEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 159 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTAEGRAKNRRVEIEV 203 >gi|319952843|ref|YP_004164110.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319421503|gb|ADV48612.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 644 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + +++K+ L I I HTDA R N LS RA + Sbjct: 537 FDFDQSYIRKDAQAIMEKVVAYLNQYPNTKIRIGSHTDA---RANDNYNLSLSERRANAT 593 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-------PMNSANRRIDILVED 340 Y L+K G+ R++ GF +L A D + NRR + +V + Sbjct: 594 YDYLVKKGIDASRLT-FKGFGETQLTNACDNNTNCSSEKHQLNRRSEFIVVE 644 >gi|254448733|ref|ZP_05062191.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015] gi|198261741|gb|EDY86028.1| OmpA/MotB domain protein [gamma proteobacterium HTCC5015] Length = 207 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E VL + LA + +V + + GHTD R N LS RA + Sbjct: 99 FFAFDSDQVKEEFNDVLIAHAKYLASNPDVSVRLEGHTDE---RGTREYNLALSERRAKA 155 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 Q LM G + ++ + GF +++ + NRR +++ Sbjct: 156 VRQFLMLYGAPAESVN-VYGFGEELPLALGSTEEAYAENRRAELV 199 >gi|260061280|ref|YP_003194360.1| OmpA family protein [Robiginitalea biformata HTCC2501] gi|88785412|gb|EAR16581.1| OmpA family protein [Robiginitalea biformata HTCC2501] Length = 832 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 90/275 (32%), Gaps = 19/275 (6%) Query: 82 GIFDEQNPPERSSQNKIDLS--IDEHITKNS-VDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 G + +N + + K D S +DE K ++G Y + + Sbjct: 560 GFLEVENLGQPINSKKDDFSYIVDEATQKGFFASNRVGGKGDDDLYSFQRLLPEETNENA 619 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK 198 + + +T D+ + + + + + + + R + L + A Sbjct: 620 IAGVVTDLVTGDAIPEALVTLLDANNRKLKEIVTEADGSFVFQDLDSNTRYRILVEKATY 679 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIID-----QRNTPMFDKSSSIPLPETIVVLQ 253 DN V + I + D + F+ + L Sbjct: 680 SEQQEEVATRDNEQVDVELPMRKLQERIVVEDGVRKLKTGPIYFNFDKHNIRSDAAEELD 739 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K+ V+ VI+I HTD+ R + N LS RA S L+++G+ RI Sbjct: 740 KLVAVMQEYPSMVIAIESHTDS---RGSSVYNRYLSDLRAKSTRAYLIENGIDPSRIQSA 796 Query: 313 SGFAHHRLKIASD-------PMNSANRRIDILVED 340 G+ RL D + NRR + +V D Sbjct: 797 KGYGEDRLLNDCDGSVRCTSQQHQLNRRSEFIVVD 831 >gi|260363437|ref|ZP_05776283.1| outer membrane protein [Vibrio parahaemolyticus K5030] gi|260876568|ref|ZP_05888923.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|260895072|ref|ZP_05903568.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308086012|gb|EFO35707.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308093570|gb|EFO43265.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308113744|gb|EFO51284.1| outer membrane protein [Vibrio parahaemolyticus K5030] gi|328473927|gb|EGF44744.1| putative outer membrane protein [Vibrio parahaemolyticus 10329] Length = 205 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ + L I ++G+ + + N LS RA Sbjct: 82 RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 138 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + + L+++G++ DR++ I G+ L + ++ NRR+ V +G Sbjct: 139 ENVRKALLQNGITPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 190 >gi|170703354|ref|ZP_02894140.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170131738|gb|EDT00280.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 243 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P L + + + +++ G+TD+ N RLS RA + Sbjct: 140 FTFDSAALTPSARQELNRFLDANRDARFSRVTVTGYTDSQ---GAHAHNVRLSEARARAV 196 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 L G+ +R + + G A + A+ + NRR++I +E Sbjct: 197 ATYLRTGGLRAERFTTVGKGAAEPVVSNATAEGRAQNRRVEIELET 242 >gi|77465487|ref|YP_354990.1| OmpA family outer membrane protein [Rhodobacter sphaeroides 2.4.1] gi|77389905|gb|ABA81089.1| Possible outer membrane protein, OmpA family [Rhodobacter sphaeroides 2.4.1] Length = 453 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPF 277 + I + + +F + + + ++ + VLA + + GHTD P Sbjct: 326 DAQLTILTLQGTDPELFRSARAEVNADYAPLVASVAAVLAENRELVGAVRVIGHTDNVPV 385 Query: 278 --RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 N N LS RA + +L++ GV I G A + + NRR Sbjct: 386 QRSNPFASNQGLSEARAATLAALLVEGGVPAG-IVTAEGHADSEPVADNATRAGRAQNRR 444 Query: 334 IDILVEDR 341 ++I +E R Sbjct: 445 VEIRIEKR 452 >gi|153838879|ref|ZP_01991546.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] gi|149747670|gb|EDM58584.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] Length = 205 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ + L I ++G+ + + N LS RA Sbjct: 82 RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 138 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + + L+++G++ DR++ I G+ L + ++ NRR+ V +G Sbjct: 139 ENVRKALLQNGITPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 190 >gi|189463929|ref|ZP_03012714.1| hypothetical protein BACINT_00263 [Bacteroides intestinalis DSM 17393] gi|189438502|gb|EDV07487.1| hypothetical protein BACINT_00263 [Bacteroides intestinalis DSM 17393] Length = 666 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 ++ + PE+ V L ++ ++L + V I + H D ++ N RLS R Sbjct: 529 ENIFYEFDRADLTPESTVALDELIQLLNDNPNVTIELSAHCD---YKGNDDYNLRLSQRR 585 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 A S + L+K G+ +R++ G+ + K ++ Sbjct: 586 AESVVRYLIKGGIDSERLTP-KGYGEQQPKTVTN 618 >gi|149928286|ref|ZP_01916529.1| OmpA/MotB [Limnobacter sp. MED105] gi|149823015|gb|EDM82257.1| OmpA/MotB [Limnobacter sp. MED105] Length = 218 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284 I+ + FD + + L + GHTD+ + A N Sbjct: 99 ITKVSLEADAYFDFDKATLKQGGKDRIDSEIAKLGQVDLNSVIAIGHTDS--IGSDAY-N 155 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +LS RA + ++ GVS DRI +I G + + + NRR++I Sbjct: 156 QKLSERRAQAVKDYMVSKGVSADRI-QIKGMGESQPVADNKTREGRAKNRRVEI 208 >gi|94971347|ref|YP_593395.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94553397|gb|ABF43321.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 605 Score = 69.9 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S PLP +I L ++ + LA +S I I G+TD N LS RA + Sbjct: 496 FASGSDQPLPTSIAALNRLKDELAINSQLAIQIDGYTDDV---GSDILNQPLSEKRALAV 552 Query: 296 YQVLMKSG---VSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + ++ E R ++G + + + NRR++I Sbjct: 553 KRYFQQTAPLSFPEMRFKSVAGHGSQNPLADNGTLQGKALNRRVEI 598 >gi|313677086|ref|YP_004055082.1| membrane protein [Marivirga tractuosa DSM 4126] gi|312943784|gb|ADR22974.1| putative membrane protein [Marivirga tractuosa DSM 4126] Length = 504 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 71/199 (35%), Gaps = 14/199 (7%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 T+ ++K L + DL + +S K L + ++K + + I S S Sbjct: 307 TQIAQKNFSLGFAVDLHLENAAQMASTEFSVSIFKRLPITKQKEVANDEYAIGS--SREF 364 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPM---FDKS--SSIPLPETIVVLQKIGEVLAHS 262 D+ + + S+ + + F+ + E L I ++ + Sbjct: 365 EDDNFQDQPVKVIEKEYQTSVSRDFSFELRKNFNYGFNETNLNDEAKSYLDDIAVMMEAN 424 Query: 263 T-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + GHTD N ++S +RA L G++ +R+ G Sbjct: 425 PALKLKVTGHTDNI---GTEDANQKISEERAKGVRDYLESIGIAAERL-SYEGKGATAPL 480 Query: 322 IASDP--MNSANRRIDILV 338 ++ + NRR++ L+ Sbjct: 481 YKNNTEENRAKNRRVEFLI 499 >gi|171322883|ref|ZP_02911587.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171091749|gb|EDT37280.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 222 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + ++ +F + P L K+ T +++ GHTD+ N Sbjct: 109 VEHVNLAGDALFATGLATLTPAARASLDKLLSEREDRTYTQVTVIGHTDSV---GNDAAN 165 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 LS RA + L G++ + +SG ++ ++NRR+DI ++ Sbjct: 166 LTLSKRRAETVAGYLKSHGLNAQTV-SVSGRGSADPVASNATPDGRASNRRVDISLQR 222 >gi|312149267|gb|ADQ29338.1| outer membrane protein [Borrelia burgdorferi N40] Length = 381 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380 >gi|225549312|ref|ZP_03770285.1| outer membrane protein [Borrelia burgdorferi 94a] gi|225370170|gb|EEG99610.1| outer membrane protein [Borrelia burgdorferi 94a] Length = 389 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 253 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 363 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388 >gi|289207478|ref|YP_003459544.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943109|gb|ADC70808.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 213 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 9/114 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLD 290 +FD S+ PE L+++ L + + GHT A N LS Sbjct: 101 QALFDFDSADLRPEGRDALRELARSLTADDVEYSSVLVEGHTCTI---GPADYNQGLSER 157 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA S L GV ED I + G+ R + ANRR+++ + RQ Sbjct: 158 RAQSVADFLASEGVREDDI-RTVGYGEDRPTADNSTREGREANRRVEVTSDVRQ 210 >gi|223889267|ref|ZP_03623855.1| outer membrane protein [Borrelia burgdorferi 64b] gi|223885300|gb|EEF56402.1| outer membrane protein [Borrelia burgdorferi 64b] Length = 333 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 197 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 251 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 252 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 307 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 308 SQKPKYPKSSPLKAKNRRVEITILN 332 >gi|225552144|ref|ZP_03773084.1| outer membrane protein [Borrelia sp. SV1] gi|225371142|gb|EEH00572.1| outer membrane protein [Borrelia sp. SV1] Length = 381 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380 >gi|226320927|ref|ZP_03796478.1| outer membrane protein [Borrelia burgdorferi 29805] gi|226233699|gb|EEH32429.1| outer membrane protein [Borrelia burgdorferi 29805] Length = 381 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380 >gi|218249525|ref|YP_002374694.1| outer membrane protein [Borrelia burgdorferi ZS7] gi|221217420|ref|ZP_03588891.1| outer membrane protein [Borrelia burgdorferi 72a] gi|224533995|ref|ZP_03674579.1| outer membrane protein [Borrelia burgdorferi CA-11.2a] gi|225549874|ref|ZP_03770836.1| outer membrane protein [Borrelia burgdorferi 118a] gi|226321923|ref|ZP_03797448.1| outer membrane protein [Borrelia burgdorferi Bol26] gi|218164713|gb|ACK74774.1| outer membrane protein [Borrelia burgdorferi ZS7] gi|221192698|gb|EEE18914.1| outer membrane protein [Borrelia burgdorferi 72a] gi|224512831|gb|EEF83198.1| outer membrane protein [Borrelia burgdorferi CA-11.2a] gi|225369565|gb|EEG99016.1| outer membrane protein [Borrelia burgdorferi 118a] gi|226232513|gb|EEH31267.1| outer membrane protein [Borrelia burgdorferi Bol26] Length = 381 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380 >gi|146329003|ref|YP_001209240.1| OmpA family protein [Dichelobacter nodosus VCS1703A] gi|146232473|gb|ABQ13451.1| OmpA family protein [Dichelobacter nodosus VCS1703A] Length = 202 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 9/147 (6%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 K + L+G +V+ + + + FD S PE +Q++ + Sbjct: 48 KANRNLTGCGEQPVVEQAPAQQVEQVLETEVKTFSADTYFDFDKSSLKPEGKAAIQQLAQ 107 Query: 258 VLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 L I++ G+TD+ + N +LS RA + L+++GV I + G Sbjct: 108 ELNQRGANVRKITVIGNTDS---KGSDAYNQKLSERRARAVSNYLIENGVPAS-IIEAYG 163 Query: 315 FAHHRLKIASDPM--NSANRRIDILVE 339 + ++D + NRR+DI V+ Sbjct: 164 NGERQPVASNDTEAGRAQNRRVDIAVD 190 >gi|15594512|ref|NP_212301.1| outer membrane protein (tpn50) [Borrelia burgdorferi B31] gi|216264209|ref|ZP_03436201.1| outer membrane protein [Borrelia burgdorferi 156a] gi|2688065|gb|AAC66563.1| outer membrane protein (tpn50) [Borrelia burgdorferi B31] gi|215980682|gb|EEC21489.1| outer membrane protein [Borrelia burgdorferi 156a] Length = 389 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 253 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 308 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 363 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 364 SQKPKYPKSSPLKAKNRRVEITILN 388 >gi|126664582|ref|ZP_01735566.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] gi|126630908|gb|EBA01522.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] Length = 373 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 G++ +I F +S+ ++++ + L A+ST + I GHTD++ Sbjct: 253 EGVVKTIDTFEIDVQFPLNSAEIGAAYDSQIRRVADALRANSTTYVEIAGHTDST---GA 309 Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 A N LS RA + L + V+ DR+S G+ ++ D +ANRR++ Sbjct: 310 AAYNQDLSERRAAAVANRLTSTLDVNPDRVSS-KGYGEAEPIASNSTDAGRAANRRVEAR 368 Query: 338 VEDRQ 342 ++ R+ Sbjct: 369 IQVRR 373 >gi|294782738|ref|ZP_06748064.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA] gi|294481379|gb|EFG29154.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA] Length = 127 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ FD S+ P+ +L + + + + ++I GHTD+ + N Sbjct: 14 TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYELTIEGHTDSV---GSNQYNIG 70 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 LS RA + L++ G+ EDRI I ++ NRR++ + R Sbjct: 71 LSRRRAEAVKAKLIEFGLPEDRIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 127 >gi|226328442|ref|ZP_03803960.1| hypothetical protein PROPEN_02336 [Proteus penneri ATCC 35198] gi|225203175|gb|EEG85529.1| hypothetical protein PROPEN_02336 [Proteus penneri ATCC 35198] Length = 340 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 ++ + +F E VL + + A +I I G+TD + N Sbjct: 207 EMVTLDSLALFASGQYKLKNEATKVLVDALINIKAKPGWLIVISGYTDNT---GNPDLNQ 263 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +LSL RA + ++K+ + G+ H+ + + NRR++I + + Sbjct: 264 KLSLKRAEAVRDWMIKTSDIAPSCFAVQGYGQHQPVADNSTLDGRARNRRVEIRLIPQ 321 >gi|115353202|ref|YP_775041.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115283190|gb|ABI88707.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 243 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P L + +V + +++ G+TD+ N RLS RA + Sbjct: 140 FAFDSAALTPSARQELDRFLDVNREARFRRVTVTGYTDSQ---GAHAHNVRLSEARARAV 196 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339 L G+ + + + G A A+ + NRR++I +E Sbjct: 197 ATYLRTGGLHAEHFTTVGKGAAEPVASNATAEGRAQNRRVEIELE 241 >gi|296157423|ref|ZP_06840258.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295892195|gb|EFG71978.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 584 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291 F +S+ + L + VL + + G++D + N +LS R Sbjct: 478 FASASARVPASAVEDLNQSAHVLNACAGNGKTARLEVAGYSDNV---GGEQANLQLSKQR 534 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 A + L+K+GV D + G+ R ++D + NRRI+ + Sbjct: 535 AEAVRAYLVKTGVPADSLIA-QGYGGARPVASNDTASGRFANRRIEFV 581 >gi|90407045|ref|ZP_01215235.1| outer membrane protein [Psychromonas sp. CNPT3] gi|90311916|gb|EAS40011.1| outer membrane protein [Psychromonas sp. CNPT3] Length = 383 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ S PE + + ++L I + GHTD+ + + W LS RA Sbjct: 287 FNSSKIKTSPE---LTNVVVQLLQTKEGDIEVIGHTDS--LGSKKYNQW-LSEKRAQVVA 340 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L+K GV RI + G +++ + NRR+ I Sbjct: 341 DYLVKEGVDPSRII-VKGEGESSFVSSNETAEGRAKNRRVKI 381 >gi|254228902|ref|ZP_04922324.1| OmpA family protein [Vibrio sp. Ex25] gi|262396751|ref|YP_003288604.1| protein F-related protein [Vibrio sp. Ex25] gi|151938579|gb|EDN57415.1| OmpA family protein [Vibrio sp. Ex25] gi|262340345|gb|ACY54139.1| protein F-related protein [Vibrio sp. Ex25] Length = 224 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 11/152 (7%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETI 249 + + + K S ++ L + ET G ++I + +Q + F S+ ++ Sbjct: 76 QTERASVKKSQNVTSLEMFLNRHNIPHETLSGGHLMIRLKEQVH---FQTGSAQLSAQSQ 132 Query: 250 VVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ IG LA + + I GH D++ + LS RA + L+ + + R Sbjct: 133 DWIRNIGHYLAGRTDVDVVIDGHADSTGAASFNDT---LSEKRAREVEKQLLATSIPRQR 189 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 + GF + + ++ N NRR+++ + Sbjct: 190 VFS-RGFGEYVPQCSNSTANGKACNRRVELTL 220 >gi|27366007|ref|NP_761535.1| putative outer membrane protein [Vibrio vulnificus CMCP6] gi|27362207|gb|AAO11062.1| putative outer membrane protein [Vibrio vulnificus CMCP6] Length = 208 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ E L I ++G+ + A N LS RA Sbjct: 83 RVLFANDSDKINPVFRKQIKEMSEFLKLYPSTSIELQGYASRT---GNAEHNLDLSKRRA 139 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 + ++L+ G+++ R+ +I GF L + ++ NRR+ Sbjct: 140 NNVREMLIGYGIAQSRV-RIVGFGDSALANEGTDEVSHALNRRV 182 >gi|119383378|ref|YP_914434.1| OmpA/MotB domain-containing protein [Paracoccus denitrificans PD1222] gi|119373145|gb|ABL68738.1| OmpA/MotB domain protein [Paracoccus denitrificans PD1222] Length = 768 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 87/286 (30%), Gaps = 18/286 (6%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ 125 F+ L A F E+ + + + + G ++ Sbjct: 335 AAQFDEAVGRLEAALPPAFTLAARHEKPGEAEAGPAEFSALVDPGGVSLRGRITDERMRD 394 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 +E+ S + + + + L+ E + + Sbjct: 395 AVESLARARFGQVDSALRSDVSVPEGWTLRAIAALEALDGLARGEAKVTRDLVRISGVSG 454 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GI--LISIIDQRNTPM------ 236 + + A +++ L + G+ I +D+ N M Sbjct: 455 SQTASDMA--AARLAQRLGAGARYELAIRYDRRMDPLLGLPSGIECVDRLNAAMQQSEIG 512 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + S+ + L+++ E + + I I GHTD+ N LS RA + Sbjct: 513 FEPNKSVIAGDPGPTLERLAETMKLCADFRIEIGGHTDSQ---GSEGFNAELSRARAQAV 569 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 + +G+ ++ G+ + +D NRRI+ L+ Sbjct: 570 LAAMTAAGIDTANMTA-KGYGESQPIADNDTDAGREANRRIEFLLL 614 >gi|5081411|gb|AAD39366.1|AF117971_1 outer membrane protein OprF [Pseudomonas stutzeri LMG 11199T] Length = 328 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276 E + + + D + FD S E+ ++ + + + + ++ GHTD+ Sbjct: 210 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 263 Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + N RLS RA + VL+ + GV +R++ + G+ R +++ NRR Sbjct: 264 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 320 Query: 334 ID 335 ++ Sbjct: 321 VE 322 >gi|85704497|ref|ZP_01035599.1| OmpA/MotB domain protein [Roseovarius sp. 217] gi|85670905|gb|EAQ25764.1| OmpA/MotB domain protein [Roseovarius sp. 217] Length = 192 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 13/117 (11%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRN 279 + I I FD SS + L + +V+ + I GHTD+ Sbjct: 82 EEQVSIQIS-------FDFDSSALRADQKPKLVTLCKVMQTADIGSFRIVGHTDS---SG 131 Query: 280 IARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 A N RLSL RA + L G+ +R+ + G L +DP + ANRR++ Sbjct: 132 SASYNERLSLLRAQEVKRHLETDCGIEPERLEAV-GVGEAFLLDKADPDSDANRRVE 187 >gi|326329962|ref|ZP_08196276.1| outer membrane porin OprF [Nocardioidaceae bacterium Broad-1] gi|325952170|gb|EGD44196.1| outer membrane porin OprF [Nocardioidaceae bacterium Broad-1] Length = 253 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S + + + V++ + L +V + I GH D + LS RA Sbjct: 154 FEHNSDVLTGDGLGVVKALAATLTEHPDVTVRIEGHAD---ITGMLAHTQDLSERRAKRV 210 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 L+ GV DR+S G+ R + P + NRR++ ++ + Sbjct: 211 LDTLVGLGVEADRLSS-KGYGETRPIVPGKP-DPGNRRVEFVITN 253 >gi|186893942|ref|YP_001871054.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|186696968|gb|ACC87597.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 168 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD E + +QKIG +L+ + + + GHTD+ N +LS R Sbjct: 61 NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ + I + G + + NRR+ I++ Sbjct: 118 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 165 >gi|108810029|ref|YP_653945.1| putative lipoprotein [Yersinia pestis Antiqua] gi|108810484|ref|YP_646251.1| lipoprotein [Yersinia pestis Nepal516] gi|145600441|ref|YP_001164517.1| lipoprotein [Yersinia pestis Pestoides F] gi|165927314|ref|ZP_02223146.1| ompA family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936533|ref|ZP_02225101.1| ompA family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009010|ref|ZP_02229908.1| ompA family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212007|ref|ZP_02238042.1| ompA family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167418991|ref|ZP_02310744.1| ompA family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426023|ref|ZP_02317776.1| ompA family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270487963|ref|ZP_06205037.1| OmpA family protein [Yersinia pestis KIM D27] gi|294502545|ref|YP_003566607.1| lipoprotein [Yersinia pestis Z176003] gi|108774132|gb|ABG16651.1| lipoprotein [Yersinia pestis Nepal516] gi|108781942|gb|ABG16000.1| putative lipoprotein [Yersinia pestis Antiqua] gi|145212137|gb|ABP41544.1| lipoprotein [Yersinia pestis Pestoides F] gi|165915649|gb|EDR34258.1| ompA family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920776|gb|EDR38024.1| ompA family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992349|gb|EDR44650.1| ompA family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206753|gb|EDR51233.1| ompA family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962985|gb|EDR59006.1| ompA family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054946|gb|EDR64746.1| ompA family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270336467|gb|EFA47244.1| OmpA family protein [Yersinia pestis KIM D27] gi|294353004|gb|ADE63345.1| lipoprotein [Yersinia pestis Z176003] Length = 165 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD E + +QKIG +L+ + + + GHTD+ N +LS R Sbjct: 58 NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 114 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ + I + G + + NRR+ I++ Sbjct: 115 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 162 >gi|317503691|ref|ZP_07961708.1| OmpA family protein [Prevotella salivae DSM 15606] gi|315665212|gb|EFV04862.1| OmpA family protein [Prevotella salivae DSM 15606] Length = 683 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + + PE+ L + +L + V I I H D +R A N RLS R Sbjct: 518 DNIFYDFNKATLRPESTAALDDLVALLNENPHVTIEISAHCD---YRGSAEYNLRLSQQR 574 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 A + + L+ G+S DR++ + G+ R K+ Sbjct: 575 AENVVRYLISKGISADRLTAV-GYGKQRPKV 604 >gi|291286065|ref|YP_003502881.1| type I secretion outer membrane protein, TolC family [Denitrovibrio acetiphilus DSM 12809] gi|290883225|gb|ADD66925.1| type I secretion outer membrane protein, TolC family [Denitrovibrio acetiphilus DSM 12809] Length = 666 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS ++ V+ I L + I GHTD+ A N +LS +RA S Sbjct: 558 LFKLNSSKLTKDSYPVVDAIAAKLKTMEGYTLQIVGHTDS---SGNAEFNKKLSAERAKS 614 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 Y L++ GV ++ I+ G ++ + NRRI+ Sbjct: 615 VYNRLVRKGVPKENIT-TYGKGEELPLYSNATRDGRVKNRRIE 656 >gi|56696346|ref|YP_166703.1| OmpA family protein [Ruegeria pomeroyi DSS-3] gi|56678083|gb|AAV94749.1| OmpA family protein [Ruegeria pomeroyi DSS-3] Length = 415 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ PE+ V+L + + L + I I GH+ + A N LS RA S Sbjct: 314 FNYDSAAIRPESAVLLNALADGLRGTDAARIEIVGHSSSE---GAAEYNRALSQRRAASV 370 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L+ G++ DR++ + G A + S NRR+++ Sbjct: 371 VAALVDMGLAADRLAAL-GKGEDEPIASNADEAGRSLNRRVEV 412 >gi|212634650|ref|YP_002311175.1| OmpA protein [Shewanella piezotolerans WP3] gi|212556134|gb|ACJ28588.1| OmpA [Shewanella piezotolerans WP3] Length = 325 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ + + K+ E LA+ V + I +TD+ R+ N R+S+ RA S Sbjct: 220 YESGGTELTRYAKAQINKVQEYLAYDQNVDLVLIDAYTDSYGGRSA---NERVSVQRADS 276 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++ + SG+ + RI G R ++ + NRR+ I + Sbjct: 277 VKELFVASGIPQSRIH-TMGHGERRHVASNKTIDERARNRRVVIRI 321 >gi|86748026|ref|YP_484522.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86571054|gb|ABD05611.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 208 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ P L+ +G+ L + I + GHTDA + N LS RA Sbjct: 98 FDYNSATLSPRAEPQLKSLGDALTSSDLKNSIVMLAGHTDA---KGGDDYNQSLSERRAE 154 Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L++ + D + + G+ +LK +++P+ + NRR+ I+ Sbjct: 155 AVKRYLIERYRIQPDNLVAV-GYGEKQLKSSAEPLAAENRRVQIV 198 >gi|5081413|gb|AAD39368.1|AF117973_1 outer membrane protein OprF [Pseudomonas stutzeri DSM 4166] Length = 323 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276 E + + + D + FD S E+ ++ + + + + ++ GHTD+ Sbjct: 210 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 263 Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + N RLS RA + VL+ + GV +R++ + G+ R +++ NRR Sbjct: 264 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 320 Query: 334 ID 335 ++ Sbjct: 321 VE 322 >gi|77165349|ref|YP_343874.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|254434450|ref|ZP_05047958.1| OmpA family protein [Nitrosococcus oceani AFC27] gi|76883663|gb|ABA58344.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|207090783|gb|EDZ68054.1| OmpA family protein [Nitrosococcus oceani AFC27] Length = 466 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 22/225 (9%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + + +E D + ++ + D ++ E E+ ++ Sbjct: 226 GGVAVRDIQRGAEVFSRIAQGDIQGAIEMIRPHDPQERERLREQVRQLQRELERWRPIEE 285 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-----------GILISIIDQRNTPM- 236 ++R + +I S ++ A+ + G +T I + + + Sbjct: 286 RQREHE---RIISEVARRSAEQLGLGSRRQTVPRFKLPEPRLDLRSARIQLGTTFHWILD 342 Query: 237 -FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ P L + + + I I G+ D + N RLS RA + Sbjct: 343 RFRLESAALEPHHRRQLNDLANQVKSNPYAEIEIVGYADTT---GPLAFNQRLSEQRANA 399 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L+ GV +I SG + + + NRR++I Sbjct: 400 VCDYLLSRGVEGSKIKSASGRGEGEPLVPERAEADRARNRRVEIF 444 >gi|312130358|ref|YP_003997698.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311906904|gb|ADQ17345.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 444 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S PE+ V+++I VL ++ + I GHTD+ + N LS RA S Sbjct: 342 FDVNSDKIKPESYGVIKEIATVLQENSGIRVKIVGHTDSD---GDDKSNLTLSQKRAASV 398 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L + +R+ G + + NRR++ + Sbjct: 399 KNFLTSEFKIDAERLE-TEGKGESEPSEPNTTPQGKANNRRVEFI 442 >gi|56697920|ref|YP_168291.1| OmpA family protein [Ruegeria pomeroyi DSS-3] gi|56679657|gb|AAV96323.1| OmpA family protein [Ruegeria pomeroyi DSS-3] Length = 211 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ VL + + + GHTDA + N L + RA + Sbjct: 68 FAFDSAELDATAQQVLTLQADWIRQFPEVRFRVYGHTDA--VGSSGY-NKSLGMRRARAV 124 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 G+S R+ + + + + + NRR Sbjct: 125 VSFFASRGISRSRLEAVVSYGETQPLVPTGERERRNRR 162 >gi|269961586|ref|ZP_06175948.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833627|gb|EEZ87724.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 318 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 T F +S+ PE+ L + L + + + G+TD A N ++S R Sbjct: 205 GTGSFALNSTTLKPESAAKLDDLVAFLNEYPQANVDVIGYTDT---SGPAAYNQKVSEKR 261 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A S L++ G+ DRI G + +++ NRR++++V Sbjct: 262 AESVANALVEKGIDADRIHA-RGEGENNPIASNETREGREQNRRVEVVV 309 >gi|326798930|ref|YP_004316749.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326549694|gb|ADZ78079.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 229 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 19/152 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ A +I T+ G E + G I I+ + +F + PE Sbjct: 78 KKMDKQAAEIERTVDGA-----------EVVQAGEGI-IVKFDSGILFGFDQTALKPEAQ 125 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++ + + L + + I I GHTD + A N LS RA + + G+S R Sbjct: 126 TNIKNLVKSLNDNPDTDILIIGHTDN---KGTAEYNQGLSERRAAAVKNYAVAQGLSSSR 182 Query: 309 ISKISGFAHHRLK--IASDPMNSANRRIDILV 338 +K G + + +++ + NRR++I++ Sbjct: 183 -AKTEGKSFNEPIADNSTEAGRAQNRRVEIVI 213 >gi|312959355|ref|ZP_07773872.1| OmpA family protein [Pseudomonas fluorescens WH6] gi|311286072|gb|EFQ64636.1| OmpA family protein [Pseudomonas fluorescens WH6] Length = 261 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 13/236 (5%) Query: 110 SVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINK 169 S N + + L+ N + ++K + + Sbjct: 21 STPPNANLENARTNFSALQANPNATKVAALETKDAQDWLDKADKAYRDKEDQKKVDQLAY 80 Query: 170 EENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILIS 227 N + L K ++ + L A + + + T G L++ Sbjct: 81 LTNQRVEVAKDTIALRESEAKLKNAGDERARALLDARDAQIKQLQDSLNAKQTDRGTLVT 140 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D +F + S +V + K+ + L + + + + G+TD++ N Sbjct: 141 FGD----VLFATNKSDLKSTGLVNITKLAQFLRDNPDRKVIVEGYTDST---GSDSYNQS 193 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 LS RA S + L + GV RI G+ + + NRR+++ + + Sbjct: 194 LSERRAASVQRALAQQGVDISRIV-TQGYGKEYPVADNGSVSGRAMNRRVEVTISN 248 >gi|170719951|ref|YP_001747639.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169757954|gb|ACA71270.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 163 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287 D +F ++ ++++IG+ L + + + GH DA A N +L Sbjct: 52 FDLSGKVLFGSDVDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADA---SGKAAYNQQL 108 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S RA+S +VL+ G+ I + G + + + NRR+ I+V Sbjct: 109 SERRAHSVAKVLIGIGMPTQNI-QTRGLGSTQPVADNRTSLGRTENRRVSIVV 160 >gi|90581117|ref|ZP_01236916.1| Putative OmpA family protein [Vibrio angustum S14] gi|90437638|gb|EAS62830.1| Putative OmpA family protein [Vibrio angustum S14] Length = 229 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I + N F + + L + V + +++ G TD+ Sbjct: 106 ITVTRNGDNIVLN-MPNEITFGFDQANLNDRAMNALHNVAIVAKEYEKTQLNVLGFTDS- 163 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 + A N RLS RA + L++ GV+ +R+ G ++ N + NRR Sbjct: 164 --KGAASYNLRLSQVRADAVANYLIRQGVNANRVVS-QGRGESNPIASNSTANGRAQNRR 220 Query: 334 IDILV 338 ++I++ Sbjct: 221 VEIIL 225 >gi|85375559|ref|YP_459621.1| outer membrane protein [Erythrobacter litoralis HTCC2594] gi|84788642|gb|ABC64824.1| outer membrane protein [Erythrobacter litoralis HTCC2594] Length = 197 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 13/138 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 ++ +LI + T F S + PE + L+ + E + I+I GH+D Sbjct: 45 IIRPDIEEAVLIPLEPLNTTISFADSGTDLTPEAVAELETLVESRQVTEGGPITIGGHSD 104 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--------ASD 325 A N R+SL RA + L+ GV E RI+ + F ++ Sbjct: 105 A---GGNDAVNMRVSLRRAEAVRDWLVARGVDEGRIT-VIAFGEQNPVEPNALPDGQPNE 160 Query: 326 PMNSANRRIDILVEDRQG 343 +ANRR++I V+ +G Sbjct: 161 DGRAANRRVEIRVDVPEG 178 >gi|222053440|ref|YP_002535802.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221562729|gb|ACM18701.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 455 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ ++K+ + + I GHTD A N +LS RA + Sbjct: 346 FVTGKNDIQPKYAGEIKKVADYMQKYPTVKGVIEGHTDNV---GSAAANMKLSQRRAEAV 402 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 L+ K G++ DR++ G+ R + + NRRI +++ Sbjct: 403 RSYLIKKHGIAADRLTA-KGYGMTRPIADNGTEAGRQQNRRITAVLDS 449 >gi|325953665|ref|YP_004237325.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323436283|gb|ADX66747.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 218 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 12/145 (8%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 ST L+ + +T I++ + FD + S+ +++ + I ++L Sbjct: 82 STEKKLINQLNDQKFSVNIDKTKDWITL----DRVYFDINKSVITDNSLIQIDNIAKILK 137 Query: 261 HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I G+TD + A N ++S +RA + L+ G+S +RI G+ Sbjct: 138 AYPTATLKIGGYTDNT---GDAAINKKISTNRADEVAKALVNKGISANRI-STEGYGDQH 193 Query: 320 LK---IASDPMNSANRRIDILVEDR 341 +D + NRR+DI + + Sbjct: 194 FLCEANDTDLCRAQNRRVDIRITKK 218 >gi|15596316|ref|NP_249810.1| YfiB [Pseudomonas aeruginosa PAO1] gi|218892915|ref|YP_002441784.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254234254|ref|ZP_04927577.1| hypothetical protein PACG_00091 [Pseudomonas aeruginosa C3719] gi|254239490|ref|ZP_04932812.1| hypothetical protein PA2G_00103 [Pseudomonas aeruginosa 2192] gi|9947038|gb|AAG04508.1|AE004542_4 YfiB [Pseudomonas aeruginosa PAO1] gi|126166185|gb|EAZ51696.1| hypothetical protein PACG_00091 [Pseudomonas aeruginosa C3719] gi|126192868|gb|EAZ56931.1| hypothetical protein PA2G_00103 [Pseudomonas aeruginosa 2192] gi|218773143|emb|CAW28955.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] Length = 168 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + P++ L KI L + + + GHTD + + N +LS RA Sbjct: 62 KVLFGNNLDRLNPDSRNTLTKIARALLAVDIDKVRLEGHTDN--YGDEGY-NQKLSERRA 118 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 S V ++G+ I + G + + S NRR+ I+V Sbjct: 119 ESVAAVFREAGMPAANIE-VRGLGMSKPVADNKTRAGRSENRRVAIIV 165 >gi|163801079|ref|ZP_02194979.1| putative lipoprotein [Vibrio sp. AND4] gi|159175428|gb|EDP60225.1| putative lipoprotein [Vibrio sp. AND4] Length = 219 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 7/129 (5%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + R G ++ N F SS L+ + +L + + I G+TD++ Sbjct: 95 VQVERVGENQLLLRMENGIGFTSSSYQLDSSIHNTLRGVARILVEYPDTSLVIDGYTDST 154 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N LS RA S Q L+ V+ R G+ ++ + NRR Sbjct: 155 ---GSDSYNQTLSERRAESVRQYLVSQNVAAGRAIA-RGYGERNPICSNQTSDGRACNRR 210 Query: 334 IDILVEDRQ 342 ++I + + Sbjct: 211 VEIQILPLK 219 >gi|28898406|ref|NP_798011.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|28806623|dbj|BAC59895.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD 2210633] Length = 214 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ + L I ++G+ + + N LS RA Sbjct: 91 RVLFANDSDEINPVFAKQIRELSDFLKEYPSTSIELQGYASRT---GGSEHNLDLSKRRA 147 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + + L+++G++ DR++ I G+ L + ++ NRR+ V +G Sbjct: 148 ENVRKALLQNGITPDRVT-IVGYGDTVLATTGTDEVSHALNRRVTATVVGHKG 199 >gi|195941898|ref|ZP_03087280.1| outer membrane protein (tpn50) [Borrelia burgdorferi 80a] Length = 380 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 244 IETEVENYIREKKIKAIKVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 298 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 299 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 354 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 355 SQKPKYPKSSPLKAKNRRVEITILN 379 >gi|89074695|ref|ZP_01161153.1| Putative OmpA family protein [Photobacterium sp. SKA34] gi|89049459|gb|EAR55020.1| Putative OmpA family protein [Photobacterium sp. SKA34] Length = 229 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I + N F + + L + V + +++ G TD+ Sbjct: 106 ITVTRNGDNIVLN-MPNEITFGFDQANLNDRAMNALHNVAIVAKEYEKTQLNVLGFTDS- 163 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR 333 + N RLS RA + L++ GV+ +R+ G ++ + NRR Sbjct: 164 --KGAESYNLRLSQVRADAVANYLIRQGVNANRVVS-QGRGESNPIASNSTSNGRAQNRR 220 Query: 334 IDILV 338 ++I++ Sbjct: 221 VEIIL 225 >gi|153833067|ref|ZP_01985734.1| outer membrane protein [Vibrio harveyi HY01] gi|148870635|gb|EDL69542.1| outer membrane protein [Vibrio harveyi HY01] Length = 204 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ E L I ++G+ + N LS RA Sbjct: 81 RVLFANDSDEIDPVFRRQIRELSEFLKEYPSTSIELQGYASKV---GGSEHNLDLSKRRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G+ DR+ +I GF L + ++ NRR+ V +G Sbjct: 138 NNVRAALLGYGIESDRV-RIVGFGDTHLAEQGTDEVSHALNRRVTASVIGYKG 189 >gi|170735277|ref|YP_001774391.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169821315|gb|ACA95896.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 228 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + +I P + L K+ T + I G+TD N RLS RA + Sbjct: 125 FDFNQAILTPAAMQQLDKVIANGKGMTFGTVGISGYTDGL---GTDTYNRRLSEQRAQAV 181 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L G++ R I G+ R ++ + NRR++I++ Sbjct: 182 ASYLQAHGLNARRFE-IHGYGAERPVALNNTALGRAQNRRVEIVL 225 >gi|5081412|gb|AAD39367.1|AF117972_1 outer membrane protein OprF [Pseudomonas stutzeri A15] Length = 321 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276 E + + + D + FD S E+ ++ + + + + ++ GHTD+ Sbjct: 208 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 261 Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + N RLS RA + VL+ + GV +R++ + G+ R +++ NRR Sbjct: 262 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 318 Query: 334 ID 335 ++ Sbjct: 319 VE 320 >gi|5081415|gb|AAD39370.1|AF117975_1 outer membrane protein OprF [Pseudomonas stutzeri ZoBell] Length = 321 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASP 276 E + + + D + FD S E+ ++ + + + + + + GHTD+ Sbjct: 208 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTTVEGHTDSV- 261 Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + N RLS RA + VL+ + GV +R++ + G+ R +++ NRR Sbjct: 262 --GTDQYNQRLSERRAEAVRNVLVNEHGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 318 Query: 334 ID 335 ++ Sbjct: 319 VE 320 >gi|107025698|ref|YP_623209.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116693120|ref|YP_838653.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|105895072|gb|ABF78236.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116651120|gb|ABK11760.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 170 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 44 ALKSAGFQETGQGFE---FGSTGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D A D LS RA L+ G+ RI+ + G + Sbjct: 101 GYSDDE--GTAAYDA-ELSRRRAEVVAVELVDVGLDAKRIAIVGKGKLDPVGDNRTPAGR 157 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 158 AQNRRAAIVVSPR 170 >gi|317406287|gb|EFV86528.1| OmpA/MotB domain-containing protein [Achromobacter xylosoxidans C54] Length = 240 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ +L ++ +V+ ++ + I GHTD+ N LS RA + Sbjct: 162 FETGSATLTARGRELLDQVADVIPKLHSDKVQIIGHTDS---SGSRSTNLALSQARADAV 218 Query: 296 YQVLMKSGVSEDRI 309 L+ G+ R Sbjct: 219 RAYLVDKGLPPGRF 232 >gi|288801975|ref|ZP_06407416.1| lipoprotein PG3 [Prevotella melaninogenica D18] gi|288335410|gb|EFC73844.1| lipoprotein PG3 [Prevotella melaninogenica D18] Length = 225 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A + + + T G+ + + +F + S L K + Sbjct: 74 MDKVAREAAQQLPNARVDKVTDANGLDCVKVTFDSGILFPLNGSNLSASAKNDLTKFASL 133 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + ++ ++I+G+TDA N LS RA + L GVS +I + GF Sbjct: 134 MQRNSNCDVAIQGYTDA---SGNDNINLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGS 190 Query: 318 HRLKIASDPMNSANRRIDILV 338 I + ++ ANRR+++ + Sbjct: 191 ANP-IENKTISQANRRVEVYL 210 >gi|332140722|ref|YP_004426460.1| sodium-type flagellar protein MotY [Alteromonas macleodii str. 'Deep ecotype'] gi|327550744|gb|AEA97462.1| sodium-type flagellar protein MotY [Alteromonas macleodii str. 'Deep ecotype'] Length = 290 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ + L IGE L +E+ + + G+TD+ +N +LS+ RA Sbjct: 190 STELTKYSQKRLTMIGEYLKEDSELELVLLDGYTDSY---GGRWNNEQLSIRRANEVKSY 246 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 L GV EDRI +++G R +D + NRR+ Sbjct: 247 LTTLGVPEDRI-QLTGHGEKRHIAPNDTRESRAQNRRV 283 >gi|302347069|ref|YP_003815367.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] gi|302150976|gb|ADK97237.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] Length = 225 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A + + + T G+ + + +F + S L K + Sbjct: 74 MDKVAREAAQQLPNARVDKVTDANGLDCVKVTFDSGILFPLNGSNLSASAKNDLTKFASL 133 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + ++ ++I+G+TDA N LS RA + L GVS +I + GF Sbjct: 134 MQRNSNCDVAIQGYTDA---SGNDNINLPLSQRRADAVSSYLKGRGVSSRQIRSVQGFGS 190 Query: 318 HRLKIASDPMNSANRRIDILV 338 I + ++ ANRR+++ + Sbjct: 191 ANP-IENKTVSQANRRVEVYL 210 >gi|312892404|ref|ZP_07751899.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311295188|gb|EFQ72362.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 452 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS+ + +L L + I++ G+ + A N +LS DRA S Sbjct: 353 FEFDSSVLRTSSYPILDATSADLRTGKKSITVNGYASSE---GTAAHNLQLSKDRANSVK 409 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L+ SGV RI K+ G + + NRR++ Sbjct: 410 TYLVNSGVDAKRI-KVKGLGETHPIADNSTEDGRVLNRRVE 449 >gi|261253628|ref|ZP_05946201.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] gi|260937019|gb|EEX93008.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] Length = 324 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 Q + F +S+ ++ L ++ E L + + I G+TD A N + Sbjct: 207 TQQLGSGSFKLNSTELNQDSADQLDELVEFLNTYPQANVEIIGYTDT---SGAAEYNQVV 263 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S RA S L + G+ RI+ G + +++ NRR++++V Sbjct: 264 SEKRAESVATTLEEKGIDSSRITA-RGEGENNPIASNETREGREQNRRVEVIV 315 >gi|70732413|ref|YP_262169.1| OmpA family protein [Pseudomonas fluorescens Pf-5] gi|68346712|gb|AAY94318.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 252 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F S+ P L + L + I I G+T Sbjct: 100 NTGVEVQRQGDQIKLI-MPGNITFATDSANIAPSFYQPLNNLANSLREFNQNQIEIVGYT 158 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GVS +S G ++ + Sbjct: 159 DST---GSRQHNMDLSQRRAQSVATYLTSQGVSGSNLSA-RGAGPDNPIASNADVNGRAQ 214 Query: 331 NRRIDI 336 NRR+++ Sbjct: 215 NRRVEV 220 >gi|156974662|ref|YP_001445569.1| hypothetical protein VIBHAR_02380 [Vibrio harveyi ATCC BAA-1116] gi|156526256|gb|ABU71342.1| hypothetical protein VIBHAR_02380 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S +P ++++ E L I ++G+ AS N LS RA Sbjct: 81 RVLFANDSDEIVPVFRRQIRELSEFLKGYPSTSIELQGY--ASKIGGAEH-NLDLSKRRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G+ DR+ +I GF L + ++ NRR+ V +G Sbjct: 138 NNVRAALLGYGIESDRV-RIVGFGDTHLAEQGTDEVSHALNRRVTASVIGYKG 189 >gi|284035576|ref|YP_003385506.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283814869|gb|ADB36707.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 306 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 16/231 (6%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 + K+ Y Y + +Q S R K L K+T K + P Sbjct: 84 DPKQPYIITTKANGYTTLDEQLAFTSGSTNRLYGKQILLFKTTATPKPTSSATASAAKPT 143 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE-----TTRTGILISIIDQRN 233 + + K +++ +V + + G + + Sbjct: 144 PASPPPVVAKPVSQPPAVKTVAANSERVVPPKTLDAKVVYTPPLVVAPVGKTTQLQALQ- 202 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 F +S + LP+ L+++ + + I + GHTD N LS R Sbjct: 203 ---FVQSKTELLPDAQPALEQLLQFMQSQPTAEIELSGHTDNQ---GDFDQNLLLSKQRV 256 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 L+K+G+ RI+ G+ R +++ NRR++++V + Sbjct: 257 EVIKAYLVKNGIPASRIT-TRGYGPTRPIASNNSETTRQQNRRVEMIVLKQ 306 >gi|218780334|ref|YP_002431652.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761718|gb|ACL04184.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] Length = 387 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + PE + ++ K+ +L ++ I ++GH D R N LS RA S Sbjct: 285 FDTNKADVKPEYLPLVYKVIPILNNNPGMKIELQGHADN---RGAKDYNQGLSERRAESV 341 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 ++L+ GV R+ G+ + + +D Sbjct: 342 KKILVDKGVDAGRL-STKGWGFTKPIVPNDSEA 373 >gi|126734660|ref|ZP_01750406.1| OmpA domain protein [Roseobacter sp. CCS2] gi|126715215|gb|EBA12080.1| OmpA domain protein [Roseobacter sp. CCS2] Length = 632 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ +T V+ I ++L I + G TD+ N +LS DRA + Sbjct: 499 FDPGSADLTADTQPVVDDIADILKACGDLRIKVSGFTDSQ---GGEVMNQQLSQDRADAV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L V + I GF +D ANRRI+ + Sbjct: 556 LTALRARRVPVSTFTSI-GFGEENPIADNDTEEGREANRRIEFSL 599 >gi|78221995|ref|YP_383742.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78193250|gb|ABB31017.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 457 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ ++++ + + I G+TD N +LS RA + Sbjct: 223 FDIDKADIRPQYKDEVKRVADYMKQYPNTTAVIEGYTDDV---GSDDYNMKLSQRRAEAV 279 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L+ G+ R+S G+ + A++ NRRI +++ Sbjct: 280 VNSLVDDFGIDRSRLSA-KGYGKTQPLTSNATEAGKQKNRRIQAVID 325 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 27/251 (10%) Query: 97 KIDLSIDE-HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG- 154 KI+ ID+ I D + KQY I ++ S+ L++ + Sbjct: 220 KIEFDIDKADIRPQYKDEVKRVADYMKQYPNTTAVIEGYTDDVGSDDYNMKLSQRRAEAV 279 Query: 155 -KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 L +++S + Y ++K ++I + + + D V Sbjct: 280 VNSLVDDFGIDRSRLSAKGYGKTQPLTSNATEAGKQKN-----RRIQAVIDCTLEDPKVI 334 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 L + + I FD P+ + K+GE + + I GHT Sbjct: 335 AKLPDRLCVSLNIQ---------FDTDKYTIKPQYHDEIAKVGEFMKQNPTTTAVIEGHT 385 Query: 273 DASPFRNIARD-NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK-IASDP-MN 328 D R + D N +LSL RA S L G+ R+S G+ + R SDP Sbjct: 386 D----RVGSYDYNMKLSLRRAESVVTYLADKFGIERSRLSA-KGYGYTRPIGYNSDPKGR 440 Query: 329 SANRRIDILVE 339 + NRRI+ +++ Sbjct: 441 AMNRRINAIID 451 >gi|22127605|ref|NP_671028.1| outer membrane protein [Yersinia pestis KIM 10] gi|45443467|ref|NP_995006.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|150260516|ref|ZP_01917244.1| putative lipoprotein [Yersinia pestis CA88-4125] gi|153949584|ref|YP_001402443.1| ompA family protein [Yersinia pseudotuberculosis IP 31758] gi|162419496|ref|YP_001605396.1| ompA family protein [Yersinia pestis Angola] gi|167401635|ref|ZP_02307129.1| ompA family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167468843|ref|ZP_02333547.1| ompA family protein [Yersinia pestis FV-1] gi|170025832|ref|YP_001722337.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|218927645|ref|YP_002345520.1| putative lipoprotein [Yersinia pestis CO92] gi|229836972|ref|ZP_04457137.1| putative lipoprotein [Yersinia pestis Pestoides A] gi|229840332|ref|ZP_04460491.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842412|ref|ZP_04462567.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229900672|ref|ZP_04515796.1| putative lipoprotein [Yersinia pestis Nepal516] gi|21960714|gb|AAM87279.1|AE013976_7 putative outer membrane protein [Yersinia pestis KIM 10] gi|45438336|gb|AAS63883.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|115346256|emb|CAL19127.1| putative lipoprotein [Yersinia pestis CO92] gi|149289924|gb|EDM40001.1| putative lipoprotein [Yersinia pestis CA88-4125] gi|152961079|gb|ABS48540.1| ompA family protein [Yersinia pseudotuberculosis IP 31758] gi|162352311|gb|ABX86259.1| ompA family protein [Yersinia pestis Angola] gi|167049017|gb|EDR60425.1| ompA family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|169752366|gb|ACA69884.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] gi|229682011|gb|EEO78103.1| putative lipoprotein [Yersinia pestis Nepal516] gi|229690722|gb|EEO82776.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229696698|gb|EEO86745.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705915|gb|EEO91924.1| putative lipoprotein [Yersinia pestis Pestoides A] gi|262360575|gb|ACY57296.1| putative lipoprotein [Yersinia pestis D106004] gi|262364521|gb|ACY61078.1| putative lipoprotein [Yersinia pestis D182038] gi|320016989|gb|ADW00561.1| putative lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 168 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD E + +QKIG +L+ + + + GHTD+ N +LS R Sbjct: 61 NKVLFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSV---GKDDYNQQLSYQR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ + I + G + + NRR+ I++ Sbjct: 118 ALAVADTLATVGIPKSNID-VRGRGKLEPVADNRTSKGRAENRRVAIII 165 >gi|75674700|ref|YP_317121.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74419570|gb|ABA03769.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 463 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 56/282 (19%), Positives = 98/282 (34%), Gaps = 19/282 (6%) Query: 62 KKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQK 121 ++AI NL D Q PP NK +S +T D + + Sbjct: 194 REAIAAALK----NLPEGYSVADDIQAPPYVFEANKDPVSGVLTLTGYVPDNAVHAAIVA 249 Query: 122 KQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 ++ I + ST ++ LS + Sbjct: 250 SAGRKFGEKIVDKLKASLGAPAGFDAVVTRALRSLSRLSTGRLVVSDRNVE-----LSGD 304 Query: 182 KILAMKRKKRLQDLAKKISS--TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + K+ DL K + V+ + T + ++++R T F+ Sbjct: 305 ALYDLAGKQIRADLPKDLPRGWETKTDVSIKPSASPVDPTVCQQLFGELLEKR-TIQFEA 363 Query: 240 SSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + ++I +L ++ E L T I I GHTD+ A N LS RA + Sbjct: 364 GQATLHLDSIGLLDQLTETALRCQTATIEIVGHTDSD---GDASFNQTLSERRAQAVVDF 420 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 L+K+G+ +R + + G + +D + NRRID +V Sbjct: 421 LVKAGLPANRFTPM-GRGSAQPIATNDTDEGKAKNRRIDFIV 461 >gi|325267796|ref|ZP_08134446.1| OmpA family protein [Kingella denitrificans ATCC 33394] gi|324980677|gb|EGC16339.1| OmpA family protein [Kingella denitrificans ATCC 33394] Length = 221 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 + E R G I + N F +S+ + L E LA E I++ Sbjct: 85 EQLANTGVEVERKGNQIKLTMPENIT-FATNSAALSAQAQNALATAAETLAKYNETTITV 143 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM- 327 GHTD++ N A +N LS +RA + L + GV+ R++ + G + ++ Sbjct: 144 VGHTDST--GNDAINN-PLSYNRANAVSSFLAQHGVATQRMT-VLGQGSRQPIADNNTEA 199 Query: 328 -NSANRRIDILV 338 + NRR++IL+ Sbjct: 200 GRAQNRRVEILI 211 >gi|228469678|ref|ZP_04054646.1| immunogenic 23 kDa lipoprotein PG3 [Porphyromonas uenonis 60-3] gi|228308697|gb|EEK17423.1| immunogenic 23 kDa lipoprotein PG3 [Porphyromonas uenonis 60-3] Length = 225 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 16/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 R+ K++ L +G E+ G I ++ +F+ SSS + Sbjct: 71 NRMDKQKKELEQQL--------PEGTQVESVNDGQAIKVVFDSG-LLFNTSSSTLSSSSR 121 Query: 250 VVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+K + L + V+ I GHTD+ R N LS DRA S L GVS R Sbjct: 122 NDLRKFADNLNKNHDTVLEIIGHTDS---SGNDRINDPLSRDRAKSVRDFLEGQGVSSTR 178 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 + K G H + NRR+++ + Q Sbjct: 179 M-KYEGRGSHEPVDTNATAEGKRKNRRVEVFILPSQ 213 >gi|149190763|ref|ZP_01869029.1| outer membrane protein OmpA [Vibrio shilonii AK1] gi|148835419|gb|EDL52390.1| outer membrane protein OmpA [Vibrio shilonii AK1] Length = 338 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S+ T + ++ + ++I G+TD+ N R+S +RA S Sbjct: 223 FEFNSTKLNENTKSDYDPLIALMQDHPDSTVTITGYTDS---SGPEEVNQRISEERAESI 279 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L G+ R++ +SG + + NRR++I V Sbjct: 280 AAYLESQGIDRSRMT-VSGMGEANPIADNSTKEGRAQNRRVEITV 323 >gi|301167893|emb|CBW27478.1| putative sodium-driven polar flagellar protein [Bacteriovorax marinus SJ] Length = 288 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 15/199 (7%) Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI 211 ++GK S + S + + L+ E IL R D +++ + + L N+ Sbjct: 84 QRGKSPDDSPTMIDSQEPVRPFPIDFLTMEGILDKHEINRESD--EELKTMKNDLYEYNL 141 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIP--LPETIVVLQKIGEVLAHSTEVISIR 269 V GI + + D +F S +I V ++ +L + + ++ Sbjct: 142 SDSVNIYEMPEGIKVKVKD---KILFRYGSLRIANEQVSIEVYTRLVRLLTNKDWSVFVQ 198 Query: 270 GHTDASPFRNIARDN---WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---- 322 G++ N + LS RA + + L++ GV D+IS + + R + Sbjct: 199 GYSSRGEVSTEDGKNMDAFELSAARASAVTRSLIRRGVKPDQISTVF-YGDIRPENIPGR 257 Query: 323 ASDPMNSANRRIDILVEDR 341 + + A+RR+D ++ R Sbjct: 258 SQTEIERASRRVDFILRKR 276 >gi|262195655|ref|YP_003266864.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262079002|gb|ACY14971.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 507 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F ++ L+++ L I I GH AS N RLS RA Sbjct: 377 LFGYDKCALSEQSHDSLREVAMTLQQHPEWGQIRIEGH--ASQEGKPEY-NLRLSSCRAM 433 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + + L+ +GV+ +R+ + GF K ++ NRR++ + Sbjct: 434 AVRKFLIANGVAAERLQSL-GFGDTCPKFSTGTPEEMQQNRRVEFI 478 >gi|254439458|ref|ZP_05052952.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198254904|gb|EDY79218.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 310 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +++ LQ + + L + + +++ GHTD+ N LS RA S Sbjct: 205 FQTGSAQLGDASVMSLQDLADYLIANPDRTVALVGHTDSV---GSLDGNIALSKRRAGSV 261 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 + L+ + R G + + + ANRR+++++ Q Sbjct: 262 LERLVTTYDIPRRQLDAQGMGYLSPVATNLTEDGREANRRVEVIITSTQ 310 >gi|254251106|ref|ZP_04944424.1| Outer membrane protein [Burkholderia dolosa AUO158] gi|124893715|gb|EAY67595.1| Outer membrane protein [Burkholderia dolosa AUO158] Length = 557 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHS----TEVISIRGHTDASPFRNIARDNWRLSLD 290 P+F + + +++ VL + I GH D+ N+RLS Sbjct: 446 PLFARGKA--TFSAARARRELAHVLRLILQNPDHRVLIEGHADSE---GSPDANFRLSEA 500 Query: 291 RAYSAYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 RA + L ++ G+ RI I G R A++ + NRR+D+ + Sbjct: 501 RARAIRDWLVVEGGLPITRI-AIQGMGDLRPIGDNATEAGRALNRRVDVSLIP 552 >gi|325920959|ref|ZP_08182848.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas gardneri ATCC 19865] gi|325548579|gb|EGD19544.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas gardneri ATCC 19865] Length = 400 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 13/121 (10%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286 +I +FD + P+ VL + L T+ + +RGHTDA + N Sbjct: 285 LITLNERILFDFDKAGIRPDAARVLDVLAAALGKVNTKDMQVRGHTDA---KGSNAYNQA 341 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRIDILVE 339 LS RA + L G + + G+ + + +P NRR++I + Sbjct: 342 LSERRADAVLAALRTRG--AAQSAGAKGYGESQPVAPNTLNGQDNPGGRQLNRRVEIFLR 399 Query: 340 D 340 Sbjct: 400 T 400 >gi|296117473|ref|ZP_06836060.1| OmpA/MotB domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295975994|gb|EFG82785.1| OmpA/MotB domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 380 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Query: 265 VISIRGHTD---ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + G+TD + P N LSL RA + L++ GV I I GF Sbjct: 302 RIEVNGYTDTSASHPGPQGEHYNQELSLRRAQTIKAELVRDGVPGPSID-IHGFGEANPL 360 Query: 322 IASDPM--NSANRRIDILV 338 + + P + NRR++I++ Sbjct: 361 VPTGPNTREAQNRRVEIIL 379 >gi|170737617|ref|YP_001778877.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819805|gb|ACA94387.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 170 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 44 ALKSAGFQETGQGFE---FGSTEPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D A D LS RA L+ G+ RI+ + G + Sbjct: 101 GYSDDE--GTAAYDA-ELSRRRAEVVAVELVDVGLDAKRIAIVGKGKLDPVGDNRTPAGR 157 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 158 AQNRRAAIVVSPR 170 >gi|86137204|ref|ZP_01055782.1| OmpA domain protein [Roseobacter sp. MED193] gi|85826528|gb|EAQ46725.1| OmpA domain protein [Roseobacter sp. MED193] Length = 329 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 12/159 (7%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 +R+ +L + S S V + L + + + + +F+ + P Sbjct: 179 QRQPQLALAPAETPSAGSPPVQKSNPASDLKDLLEQQGHVVL----DGVVFETGAETLSP 234 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GV 304 E I L+ + + ++ + I GHTD+ DN LSL RA L+ + GV Sbjct: 235 EAITSLRGLAGFMEEQSKAQVLIVGHTDSV---GGLEDNTSLSLRRAQMVKDALVSALGV 291 Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 +E RI I+G + ++ NRR+++++ R Sbjct: 292 AEGRI-SIAGAGYMAPIASNLTAAGREKNRRVEVVLLAR 329 >gi|313835693|gb|EFS73407.1| OmpA family protein [Propionibacterium acnes HL037PA2] gi|314928364|gb|EFS92195.1| OmpA family protein [Propionibacterium acnes HL044PA1] gi|314970216|gb|EFT14314.1| OmpA family protein [Propionibacterium acnes HL037PA3] Length = 115 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 12/118 (10%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIARDNWR 286 ID + +FD S + P ++ ++ + V + I + G+TD N Sbjct: 3 IDLDASVLFDLDSDVVKPAGRQIIDRMVKQFVARKVSGKIGVTGYTDN---SGSVAHNLD 59 Query: 287 LSLDRAYSAYQVLMKSGVSEDR----ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 LS RA S ++L G+ + ++ G A S+ NRR+ I V++ Sbjct: 60 LSRRRAVSVARLL---GLQLSKGVTLVTAGKGEADPVASNDSEAGRRLNRRVTITVKE 114 >gi|119896920|ref|YP_932133.1| hypothetical protein azo0629 [Azoarcus sp. BH72] gi|119669333|emb|CAL93246.1| conserved hypothetical secreted protein [Azoarcus sp. BH72] Length = 198 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +++ PE+ L + + +V + ISI GHTD DN L L RA + Sbjct: 97 FETAAARLTPESRNQLPRVLAQVRSRPAPDISIIGHTDTV---GSNADNEALGLVRARTV 153 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 ++L +GV+ I+ ++ L + + + NRR+++ V Sbjct: 154 LKLLEAAGVTAREIT-VTSHGERNLLVPTADNTDEARNRRVEVTV 197 >gi|28900403|ref|NP_800058.1| hypothetical protein VPA0548 [Vibrio parahaemolyticus RIMD 2210633] gi|308095573|ref|ZP_05906887.2| OmpA family protein [Vibrio parahaemolyticus Peru-466] gi|308125408|ref|ZP_05775064.2| OmpA family protein [Vibrio parahaemolyticus K5030] gi|308126617|ref|ZP_05911271.2| OmpA family protein [Vibrio parahaemolyticus AQ4037] gi|28808714|dbj|BAC61891.1| putative protein F-related protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085093|gb|EFO34788.1| OmpA family protein [Vibrio parahaemolyticus Peru-466] gi|308107912|gb|EFO45452.1| OmpA family protein [Vibrio parahaemolyticus AQ4037] gi|308113845|gb|EFO51385.1| OmpA family protein [Vibrio parahaemolyticus K5030] Length = 208 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 11/180 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 K+ + + S + R + A+K S+ ++ L + ET Sbjct: 32 APKTNTELRHPEWGYASASHVSTAPRVNQTARAAEKKSNNVTSLEMFLDRHNIPHETIGG 91 Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280 G ++I + +Q + F S+ + L+K+G LA + + I GH D++ + Sbjct: 92 GHLMIRLKEQVH---FQTGSAQLSSNSQDWLRKLGHYLAGRTDVDVVIDGHADSTGAASF 148 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 LS RA + ++ S + R+ GF + + A+ + NRR+++++ Sbjct: 149 NDT---LSEKRAREVEKQMLASSIPRQRVFS-RGFGEYVPQCSNATSSGKACNRRVELML 204 >gi|218511064|ref|ZP_03508942.1| hypothetical conserved membrane protein [Rhizobium etli Brasil 5] Length = 106 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 SS P+ +LQK+ V+ I I GHTDA AR N LS+ RA + Sbjct: 9 SSAIAPKQKPMLQKLCSVVKEMDIKLIRIVGHTDA---SGGARYNQNLSMLRAREVARFF 65 Query: 300 -MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + +R+ + G P NRR++ Sbjct: 66 TEDCHIPPERLEAV-GVGEQFPLDPQKPKADENRRVE 101 >gi|163786795|ref|ZP_02181243.1| hypothetical protein FBALC1_16457 [Flavobacteriales bacterium ALC-1] gi|159878655|gb|EDP72711.1| hypothetical protein FBALC1_16457 [Flavobacteriales bacterium ALC-1] Length = 637 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 20/289 (6%) Query: 68 YFNPFGKNLMTASKGIF----DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 YF+ G + F D + P R+ ++ + D+ + + G + ++ Sbjct: 347 YFSSNGHLGLGGMDVFFTREIDGKIAPIRNVGIPVNSNADDFAFSIDEETEEGFVSSNRE 406 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + ++++ + Q S T +K ++ + + + E + Sbjct: 407 GGKGSDDVYAIKKLQPLCDVLVSATVLDDKTREPISGASVSLYDAEGNKVVSKTTNAEGV 466 Query: 184 LAMKRK-KRLQDLAKKISSTLSGLV----ADNIVKGVLFETTR-TGILISIIDQRNTPMF 237 + + +L + S V + V ++++ + F Sbjct: 467 AEFIIECEEDTELEVVMDGFDSKRVPVKGSSEEENNVQISLDPIEKLIVADKIELAPIYF 526 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 + S + L K+ +++ + VI+ HTD + A N RLS RA + Sbjct: 527 EYDKSNVTAQAAFELDKLVQIMNKYPDLVINATSHTD---YIGSAPYNMRLSDRRAKTTV 583 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340 Q ++ G+ E RIS + G KI +D NRR + ++ Sbjct: 584 QYVISKGIDESRISGV-GKGETEPKIDCGTKCTDEERQMNRRSEFIIVS 631 >gi|260773001|ref|ZP_05881917.1| outer membrane protein [Vibrio metschnikovii CIP 69.14] gi|260612140|gb|EEX37343.1| outer membrane protein [Vibrio metschnikovii CIP 69.14] Length = 222 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 14/212 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C + +++ G+ + I + + +++ + Sbjct: 15 SGCAATQRQNATTGESETNAATRGALIGAVAGAAAGLATGDNAKQRRQRALIGATGGAAV 74 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQ 253 G D + E +G+ + + + F +S L+ Sbjct: 75 GGGVGYYFDQQEAALREELLHSGVQVQRVGDNQLLLRMENGIGFQTNSYQLDSSIHRTLR 134 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + ++L + + I GHTD++ N LS RA S L+ GV+ R Sbjct: 135 GVAKILVQYPDTSLVIDGHTDST---GGDTTNQVLSERRAESVRSFLLSQGVAPGRAIA- 190 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G + + NRR+DI + + Sbjct: 191 RGNGSRFPICTNSTVEGRACNRRVDIQILPLK 222 >gi|255318660|ref|ZP_05359891.1| outer membrane protein [Acinetobacter radioresistens SK82] gi|262379115|ref|ZP_06072271.1| outer membrane protein [Acinetobacter radioresistens SH164] gi|17978530|gb|AAK57731.1| OmpA-like protein precursor [Acinetobacter radioresistens] gi|255304342|gb|EET83528.1| outer membrane protein [Acinetobacter radioresistens SK82] gi|262298572|gb|EEY86485.1| outer membrane protein [Acinetobacter radioresistens SH164] Length = 348 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + R + N RLSL RA Sbjct: 230 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIDGHTDNTGPRAL---NERLSLARA 286 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + + R++ GFA + + + NRR+ Sbjct: 287 NSVKSSLVNEYNIDPSRLTA-QGFAWDQPIADNSTKEGRAMNRRV 330 >gi|149914118|ref|ZP_01902649.1| OmpA family protein [Roseobacter sp. AzwK-3b] gi|149811637|gb|EDM71470.1| OmpA family protein [Roseobacter sp. AzwK-3b] Length = 181 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S+ L + +I GHTD+ R N LSL RA + Sbjct: 84 FATDSARLGHSARQNLANFFASTGAVSY--TIVGHTDS---RASDEYNMDLSLRRANAVA 138 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 V +G RI+ + G K +++ +ANRR++IL Sbjct: 139 SVARSTG---ARIADVRGMGERAPKASNNTAAGMAANRRVEIL 178 >gi|262403880|ref|ZP_06080438.1| outer membrane protein [Vibrio sp. RC586] gi|262350384|gb|EEY99519.1| outer membrane protein [Vibrio sp. RC586] Length = 337 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S I + ++ + L + E I + GHTD+ N LS RA S Sbjct: 237 FDSSEIILTRSLSKKISQVIKFLFDNPEIKIEVIGHTDSV---GSQEYNLVLSKQRATSI 293 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 Q+++ GVS +RI+ I G + + NRR++I Sbjct: 294 AQLIIDGGVSINRIN-IIGKGEDEPITTNSHAMGRAQNRRVEI 335 >gi|327480660|gb|AEA83970.1| outer membrane protein OprF precursor [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276 E + + + D + FD S E+ ++ + + + + ++ GHTD+ Sbjct: 179 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 232 Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + N RLS RA + VL+ + GV +R++ + G+ R +++ NRR Sbjct: 233 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 289 Query: 334 ID 335 ++ Sbjct: 290 VE 291 >gi|237744058|ref|ZP_04574539.1| outer membrane porin F [Fusobacterium sp. 7_1] gi|256028141|ref|ZP_05441975.1| Outer membrane porin F [Fusobacterium sp. D11] gi|260494357|ref|ZP_05814488.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33] gi|289766078|ref|ZP_06525456.1| outer membrane porin F [Fusobacterium sp. D11] gi|229431287|gb|EEO41499.1| outer membrane porin F [Fusobacterium sp. 7_1] gi|260198503|gb|EEW96019.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_33] gi|289717633|gb|EFD81645.1| outer membrane porin F [Fusobacterium sp. D11] Length = 182 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 G+ I I+ +FD I + L + + L + + I I G+TD Sbjct: 57 EEGVTIRREGNNLILSMPELILFDFDKYIVKDKIKPSLSTLAKALGENKDIHIKIDGYTD 116 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 F N LS+ RA + L+ G I I G+ + S N Sbjct: 117 ---FIGTEAYNLELSVKRANAIKDFLISRGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 172 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 173 RRVEFII 179 >gi|124002133|ref|ZP_01686987.1| outer membrane protein OmpA family [Microscilla marina ATCC 23134] gi|123992599|gb|EAY31944.1| outer membrane protein OmpA family [Microscilla marina ATCC 23134] Length = 617 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 F + +++ + + L ++ V I + GHTD +N LS RA Sbjct: 508 RVFFMYKKAEMHKKSLPAAKALLTFLKNNPGVSIEVSGHTDDV---GSNSNNVALSQQRA 564 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 Y L+ G+ ++R+ K G+ I ++ + NRR Sbjct: 565 NVVYNWLVSKGIEKERLVK-KGYGAKVPIIPNETNYARIVNRR 606 >gi|254491000|ref|ZP_05104181.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224463513|gb|EEF79781.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 171 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 F + E+ V Q+I ++L S + I GHTD S + A N LSL RA Sbjct: 67 KLFFLLDKTEFTAESRVESQEIYQKILDRSFGEVVITGHTDTS--ASSAY-NEALSLRRA 123 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 Q L+ GV D + +IS +RL + D + NRR++I Sbjct: 124 QKVRQQLIDFGVPADSV-RISAEGEYRLLVSTPDDTVEVRNRRVEI 168 >gi|163800823|ref|ZP_02194723.1| putative outer membrane protein [Vibrio sp. AND4] gi|159175172|gb|EDP59969.1| putative outer membrane protein [Vibrio sp. AND4] Length = 212 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F SS P + ++ + L I ++G+T N LS RA Sbjct: 85 RILFANDSSRIDPVFAGQISELSDFLKEYPTTSIELKGYTS---ITGTNEYNLALSKRRA 141 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 S Q L+ +G++ +R+ I GF + + + NRR+ V +G Sbjct: 142 ESVRQELVNNGIAPERLE-IVGFGENNPASQGTDETSQALNRRVTASVIGYKG 193 >gi|127511243|ref|YP_001092440.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126636538|gb|ABO22181.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 201 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 8/108 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q +F S P+ ++ + + ++I GH + N LS Sbjct: 73 QELKILFANDSYYIDPQYYDQVEVVATFMRQYPNTKVTIEGHCSKT---GSYEHNLALSQ 129 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 +RA + +L + G++ DR++ I G+++ R + + NRR+ Sbjct: 130 NRADAVTSLLSERFGIASDRLTAI-GYSYDRPVDPTHTKMAHTRNRRV 176 >gi|312129756|ref|YP_003997096.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311906302|gb|ADQ16743.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 800 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++S + LP + L ++ + + I I GHT+ R N RLS RA + Sbjct: 701 FEQSQTTMLPGSEDKLAEVLQFMKDHPNVKIEIIGHTEK---AGDERQNVRLSEFRARTV 757 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 L G++ RI+ +G +D + NRRI++ V + Sbjct: 758 ANWLFNKGIASSRIT-TAGKGSAEPIDPND--AAVNRRIEVKVVE 799 >gi|260769389|ref|ZP_05878322.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972] gi|260614727|gb|EEX39913.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972] Length = 316 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS L + E L + + I GHTD++ N +LS R Sbjct: 210 DALSFDSSS--LNATQQQALSTLAEKLNQQPQAQVLIIGHTDST---GSDAYNTKLSTRR 264 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A +A VLM++ V+E RI K+ G R + + NRR+++ + Sbjct: 265 AQAAADVLMENQVAEHRI-KVFGEGQTRPIDTNTTPAGRAHNRRVEVQI 312 >gi|313683568|ref|YP_004061306.1| ompa/motb domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156428|gb|ADR35106.1| OmpA/MotB domain protein [Sulfuricurvum kujiense DSM 16994] Length = 412 Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 18/227 (7%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK----EKIL 184 + ++ K K E ++ KE+ +P ++K E + Sbjct: 186 EKLKPGQSASSIAMADPMQPVIDVKPVKPTKPRKEEPAVPKEKETPVPDVTKTVMPEPEV 245 Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-------RNTPMF 237 + + ++ KI + A V+ + + +++ RN +F Sbjct: 246 KSQTTPPIANVEPKIEPAAPVVAAKPAVEKPVVVVAKPATEKPVVEAAAPAPYFRNFQIF 305 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP---FRNIARDNWRLSLDRAY 293 + L++ ++ ++I G+TD P + + N LS RA Sbjct: 306 ESRVVALSEVGKERLREWAQLFKAGGYKSVTINGYTDNIPPQRLKALYATNAILSEARAQ 365 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GV I K++G ++ S NRRI+ ++ Sbjct: 366 MVADYLVSIGVDSSAI-KVNGRGDVDPVAPNETEEGRSKNRRIEFIL 411 >gi|269955512|ref|YP_003325301.1| OmpA/MotB domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304193|gb|ACZ29743.1| OmpA/MotB domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 217 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 18/212 (8%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 +++ + +L + + +I R DLA Sbjct: 7 GAGPASAQSTTPASASSAPTPSPDPELMQKAEAALAEQAERIEAAEITDALRADATFDLA 66 Query: 197 KK-----ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + +++ + + ET + +++ + +F S PE Sbjct: 67 PEDATFALATEDATFTLRPDDSTITVETRQETEDDTVVTLTSDLLFGFGESALTPEAQAA 126 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + ++ + + + GHTDA N LS RA + VL SG D + Sbjct: 127 VAELATTIPQ-DAAVRVDGHTDAV---GSDELNLTLSEQRADAVAAVL--SGARPDLVLT 180 Query: 312 ISGFAHHRLKIASD-------PMNSANRRIDI 336 + G +++ + NRR+++ Sbjct: 181 VEGHGEADPVASNEEGGVDNPAGRALNRRVEV 212 >gi|153868783|ref|ZP_01998526.1| outer membrane OmpA family protein [Beggiatoa sp. PS] gi|152074626|gb|EDN71462.1| outer membrane OmpA family protein [Beggiatoa sp. PS] Length = 533 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%) Query: 237 FDKSSSIPLPETIVVLQK----IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 FD +S+ P LQ+ + + + + + GHTD+ R +N LS RA Sbjct: 139 FDTNSAELKPFHKSQLQQWEQGLTSSKSLTPPSVRVEGHTDS---RGTDENNMTLSERRA 195 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 S + L++ G S DR I + +L + + + NRR++I+ Sbjct: 196 TSVKKHLVEELGASSDRFDIIP-YGESQLTASEETEEGRALNRRVEIV 242 >gi|269966185|ref|ZP_06180275.1| putative protein F-related protein [Vibrio alginolyticus 40B] gi|269829332|gb|EEZ83576.1| putative protein F-related protein [Vibrio alginolyticus 40B] Length = 224 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 70/180 (38%), Gaps = 11/180 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 KS + + S + + R + + K S ++ L + ET Sbjct: 48 APKSNTELRHPEWGYPSASNVASSPRSYQTARASVKKSQNVTSLEMFLSRHNIPHETLSG 107 Query: 223 G-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNI 280 G ++I + + + F S+ ++ ++ IG LA + + I GH D++ Sbjct: 108 GHLMIRLKEHVH---FQTGSARLSAQSQDWIRNIGHYLAGRTDVDVVIDGHADST---GA 161 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 N LS RA + L+ + + R+ GF + K ++ + NRR+++ + Sbjct: 162 ESFNDTLSEKRAREVEKQLLATSIPRQRVFS-RGFGEYVPKCSNATASGKACNRRVELTL 220 >gi|300772840|ref|ZP_07082709.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759011|gb|EFK55838.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 655 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L ++ L + I + HTD+ R + N +LS +RA +A ++ Sbjct: 554 IRADAKPILNQLVNTLRDNPTLKIELSSHTDS---RATHKYNMKLSQNRAQAAVDYIVSR 610 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++ DRI G+ RL SD + ANRR +I V + Sbjct: 611 GIARDRIVA-KGYGETRLVNKCADGVKCSDEEHQANRRTEIKVLE 654 >gi|296238955|gb|ADH01478.1| OmpA family protein [Pseudomonas sp. 2663] Length = 535 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 12/118 (10%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLD 290 R+ FD + + ++++G A + + GHTD P R +N LS Sbjct: 377 RSDGAFDVGKAQVRTDFERNIERLGAAFAPWPGDLEVIGHTDRQPIRTSEFGNNQALSEA 436 Query: 291 RAYSAYQVLMKSGVSE---------DRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 RA + L ++ + R SG + ++ + NRR+D+L Sbjct: 437 RARTVADELRRTALPGGAQAPGNAVQRNIGFSGRGDTQPIDSAQTPAAYERNRRVDVL 494 >gi|163753666|ref|ZP_02160789.1| outer membrane protein, peptidoglycan-associated lipoprotein [Kordia algicida OT-1] gi|161325880|gb|EDP97206.1| outer membrane protein, peptidoglycan-associated lipoprotein [Kordia algicida OT-1] Length = 626 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 83/280 (29%), Gaps = 14/280 (5%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKN-SVDLKIGSTNQKKQYQRL 127 + F + S G P S+ + + DE K + G Y+ Sbjct: 353 LDVFASKVKGDSYGAVRNLGTPLNSNSDDFSFTFDEETKKGFVASNRDGGKGSDDIYEVT 412 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 N + K + S L + E + + Sbjct: 413 LINPICDVDYVVVVTDKETGAALSGANVVLADDQGNSVGSKTTDAEGKVTFKVECDKSSR 472 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + +Q + + D+ K V +I + N FD + Sbjct: 473 LEATIQ---GYVPQQVDVNSGDDPTKLVEIPLAPIEEIIEDVIVLNPIYFDFDKHNIRQD 529 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L K+ V+ VI + HTD R A N RLS RA S Q ++ G+ Sbjct: 530 AAFELDKVVNVMTKYPNMVIKVETHTD---IRGSASYNQRLSERRAKSTVQYIISKGIDA 586 Query: 307 DRISKISGFAHHRLKIA-----SDPMNSANRRIDILVEDR 341 R+S G I ++ + NRR D ++ + Sbjct: 587 SRLSS-EGKGESSPLIDCGNKCTEEEHQQNRRSDFIIVSK 625 >gi|126733987|ref|ZP_01749734.1| OmpA family domain protein [Roseobacter sp. CCS2] gi|126716853|gb|EBA13717.1| OmpA family domain protein [Roseobacter sp. CCS2] Length = 312 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ LQ + + LA + +++ GHTD+ N LS RA S Sbjct: 206 FETGSAQLAAGNYASLQALADYLAGAPQLRVALVGHTDS---SGSLEANIALSKRRAASV 262 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 + L+ + G S +I G + + + ANRR++++V Q Sbjct: 263 LERLVSAYGTSRGQIEA-EGMGYLAPIAPNLTEEGREANRRVEVIVTSTQ 311 >gi|328473002|gb|EGF43850.1| putative lipoprotein [Vibrio parahaemolyticus 10329] Length = 219 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 115 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 171 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 172 RQFLVSQKVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 219 >gi|114765941|ref|ZP_01444955.1| OmpA/MotB domain protein [Pelagibaca bermudensis HTCC2601] gi|114541755|gb|EAU44793.1| OmpA/MotB domain protein [Roseovarius sp. HTCC2601] Length = 248 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 79/264 (29%), Gaps = 45/264 (17%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 + K +F+E + L + +T S ++ +T Sbjct: 23 TEIFQRQKQVFEEAETSGLGQTRGLKLITVQDVTAESAAPEVAATEPAAPS-----APEL 77 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + Q L S G+ + S + + + + P L+ M Sbjct: 78 QQTAPQVATTAPELAAPSGSGQGVSISASSDSAPQRPADPNRPLLAAASDAPM------- 130 Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + G +A + + E F S+ + LQ Sbjct: 131 ---------VFGQLAPELQVNLHIE------------------FGFDSAAISDDQKPKLQ 163 Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA-YSAYQVLMKSGVSEDRISK 311 + L + I I GHTD+ N LS+ RA A ++ + G+ R+ Sbjct: 164 TVCMALMAADVGKIRIVGHTDS---AGSDAYNETLSVLRAKEVARNLIEECGLPPSRLET 220 Query: 312 ISGFAHHRLKIASDPMNSANRRID 335 + G ++P NRR++ Sbjct: 221 V-GMGERFPFNEANPRADENRRVE 243 >gi|224532865|ref|ZP_03673480.1| outer membrane protein [Borrelia burgdorferi WI91-23] gi|224512254|gb|EEF82640.1| outer membrane protein [Borrelia burgdorferi WI91-23] Length = 381 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 245 IETEVENYIREKKIKAIEVEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKHPKSSPLKAKNRRVEITILN 380 >gi|254487047|ref|ZP_05100252.1| OmpA family protein [Roseobacter sp. GAI101] gi|214043916|gb|EEB84554.1| OmpA family protein [Roseobacter sp. GAI101] Length = 191 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S P+ L + + + +IS GHTD+ R N +LSL+RA S Sbjct: 93 FFKTDSYRIHPQGKARLAEFFKSTGAVSYIIS--GHTDS---RASDAYNMKLSLNRANSV 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + +SG RI+ + G+ ++ + NRR++I+ Sbjct: 148 AAIAQQSG---ARIADVRGYGERIPAASNSTAAGMAKNRRVEII 188 >gi|120556561|ref|YP_960912.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120326410|gb|ABM20725.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 401 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 214 GVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH 271 G + T GI ++ F +SS+ ++++ + + E + I GH Sbjct: 272 GATVDETGCEGITETVETIELRVQFPTNSSVIDNAYDNEIRRVADFMEEYPETTVEIAGH 331 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MN 328 TD+ A N LS RA + L GV DR+S + G+ +D Sbjct: 332 TDS---AGEAGYNQFLSQRRAEAVAGRLTGPLGVDPDRVSAV-GYGEAEPVATNDTPAGR 387 Query: 329 SANRRIDILVEDRQ 342 + NRR++ ++ R+ Sbjct: 388 AQNRRVEARIQVRR 401 >gi|323499085|ref|ZP_08104065.1| outer membrane protein [Vibrio sinaloensis DSM 21326] gi|323315920|gb|EGA68951.1| outer membrane protein [Vibrio sinaloensis DSM 21326] Length = 278 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 91/278 (32%), Gaps = 32/278 (11%) Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 L+ + I + PE+ S + I + T D +G Sbjct: 9 ALIASVASIIGCSSYPEQGSGGLGENYIQSNFTPVMPDEPLG------------PEHGLR 56 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK-RKKRLQ 193 + Q ++ ++L R+ + + N+ L + + ++KRL Sbjct: 57 FDWQLAKLHLDALIREGARWCFPAAVVQAIEKQNRIARELEGGLLLDAANDIVIQRKRLN 116 Query: 194 DLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 +L ++ S D + ID + F +S+ P+ + Sbjct: 117 ELELQLDYVTSQARCVPPVDEGAFHQRLAVIDQLFNLLNIDNQ----FAFNSAEINPKYM 172 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K +L +S+ GH D+ +I N L++DRA + L G+S R Sbjct: 173 GHLAKAANILTEHPSLALSVTGHADS--VGDIEY-NQNLAMDRAQQVKRYLSIFGLSPTR 229 Query: 309 I--SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 I + + NRR+ I V D Q Sbjct: 230 IETHSV---GDTLPLYEGESEGVRLTNRRVSIEVVDTQ 264 >gi|313203341|ref|YP_004041998.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312442657|gb|ADQ79013.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 662 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 5/126 (3%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + L +V+ F IS Q ++ P + LQ + ++L + Sbjct: 494 TSLSTQGLVESKTFNVDFKLSAISKPIQIENIFYESGKWELTPASENGLQVLVKLLNDNP 553 Query: 264 EV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 + I I +TD DN LS RA S L+ ++ DR++ + G+ + + Sbjct: 554 NITIEISANTD---LVGSNADNKALSTKRAKSVVDYLISKKIAPDRLTSV-GYGEEKPVV 609 Query: 323 ASDPMN 328 M Sbjct: 610 VDAAMA 615 >gi|28898041|ref|NP_797646.1| putative lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|308094661|ref|ZP_05890745.2| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308095662|ref|ZP_05907484.2| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308125455|ref|ZP_05775378.2| outer membrane protein [Vibrio parahaemolyticus K5030] gi|308126686|ref|ZP_05911817.2| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|28806255|dbj|BAC59530.1| putative lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|308088657|gb|EFO38352.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308091164|gb|EFO40859.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308107632|gb|EFO45172.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|308115580|gb|EFO53120.1| outer membrane protein [Vibrio parahaemolyticus K5030] Length = 222 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 118 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 174 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 175 RQFLVSQKVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 222 >gi|332292958|ref|YP_004431567.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171044|gb|AEE20299.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 640 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 12/114 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + LQ+I +++ +I I HTD R A N LS +RA S Sbjct: 530 FESNRYAINIFAAQQLQRIIDIMNEYPALIIKIESHTDQ---RGGASYNQTLSENRATST 586 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILVEDR 341 L+K+G++ RI GF R D + NRR D +V R Sbjct: 587 RDYLIKNGITSSRIESAKGFGESRPIHICDEADDSCTEVQYLENRRSDFIVVSR 640 >gi|294783612|ref|ZP_06748936.1| outer membrane protein [Fusobacterium sp. 1_1_41FAA] gi|294480490|gb|EFG28267.1| outer membrane protein [Fusobacterium sp. 1_1_41FAA] Length = 141 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ FD S+ P+ +L + + + + ++I GHTD+ + N Sbjct: 28 TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYELTIEGHTDSV---GSNQYNIG 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 LS RA + L++ G+ EDRI I ++ NRR++ + R Sbjct: 85 LSRRRAEAVKAKLIEFGLPEDRIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 141 >gi|227537401|ref|ZP_03967450.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242779|gb|EEI92794.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 655 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L ++ L + I + HTD+ R + N +LS +RA +A ++ Sbjct: 554 IRADAKPILNQLVNTLRDNPTLKIELSSHTDS---RATHKYNMKLSQNRAQAAVDYIISR 610 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++ DRI G+ RL SD + ANRR +I V + Sbjct: 611 GIARDRIVA-KGYGETRLVNKCADGVKCSDEEHQANRRTEIKVLE 654 >gi|116329523|ref|YP_799243.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329838|ref|YP_799556.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122267|gb|ABJ80310.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123527|gb|ABJ74798.1| OmpA-family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 684 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 F+ + + E +L + + +L ++++ I I GHTD + N RLS RA Sbjct: 580 RVYFEFNKTKITNENKKLLDPLVDYLLKNASDKIEIGGHTDN--VASKEY-NTRLSAKRA 636 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 + Y+ + G+SE R+ KI + + + ++ + NRR+ Sbjct: 637 RNVYEYFLSKGISEKRM-KIRAYWYSQPDADNETEIGRAKNRRV 679 >gi|326794724|ref|YP_004312544.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326545488|gb|ADZ90708.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 304 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 8/113 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289 R +F + + L + + + + I I GHTD RDN LS Sbjct: 183 RTAALFPTNGADLTDRIKHRLDLVALYVNNDPSIQYIYIDGHTDTI---GSRRDNRELSK 239 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 RA L++ GV D I + ++ NRR+ I +E Sbjct: 240 KRAEKITAYLLEQGVPADMIVS-RYHGERYPVASSRTNQGRERNRRVTIRLER 291 >gi|104779940|ref|YP_606438.1| outer membrane lipoprotein [Pseudomonas entomophila L48] gi|95108927|emb|CAK13623.1| putative outer membrane lipoprotein (OmpA domain) [Pseudomonas entomophila L48] Length = 166 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287 D +F + ++++IG+ L + + I GH DA A N +L Sbjct: 55 FDLSGKVLFGSDLDSLNSASESIVERIGKALLSVDIQRVRIDGHADA---SGKAAYNQQL 111 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 S RA S + L+ G+ I + G + + NRR+ I+V Sbjct: 112 SERRAQSVAKALIGIGMQPQNI-QTRGLGSSQPVADNRTSTGRMENRRVSIVV 163 >gi|315124911|ref|YP_004066915.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018633|gb|ADT66726.1| outer membrane fibronectin-binding protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 319 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + ++D + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNSRSSNDTKEGRADNRRVD 313 >gi|90412166|ref|ZP_01220172.1| Conserved hypothetical outer membrane protein [Photobacterium profundum 3TCK] gi|90326890|gb|EAS43275.1| Conserved hypothetical outer membrane protein [Photobacterium profundum 3TCK] Length = 220 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S PE+ VL+ I + L +S + +++ GHTD+ N+ L L RA Sbjct: 118 RVYFAFDSQHLTPESQTVLKTIAQKLKNSPQTVTLNGHTDSV---GPQGYNYTLGLQRAK 174 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 S+ Q L+ + V + + + + + ++ + NRR+D++ Sbjct: 175 SSMQYLIDNEVKDTNLKSKT-YGETQPIESNTTSQGRAMNRRVDVV 219 >gi|209965626|ref|YP_002298541.1| OmpA family protein [Rhodospirillum centenum SW] gi|209959092|gb|ACI99728.1| OmpA family protein [Rhodospirillum centenum SW] Length = 314 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 50/233 (21%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 EK DL + ++ + + + L + + L + I S S + Sbjct: 43 NAEEKVVDLSRYEEVVNEARRLTEEAAKQKQENEELRRLLTQAVAQLERDIESRRS--MR 100 Query: 209 DNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + +++ + R G+ ++ I+ +F+ ++ E ++ + ++L Sbjct: 101 NQMLQSLEASLDRQGVRVTLDPESGILRLSGDLLFETGKAVYREEADRTVKVMADILGSV 160 Query: 263 ------------TEV-------ISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQV 298 + + GHTD PFRN+ N RLS +RA + +Q Sbjct: 161 LPCFAEGASVACPGERMPILEAVLVEGHTDRQPFRNVPPAQSQALNDRLSTERALAVFQS 220 Query: 299 LMK-----------SGVSEDRISKISGFAHHRLKI----ASDPMNSANRRIDI 336 L + SG + +SG+ R ++ NRRID+ Sbjct: 221 LRETSPVLETLRNPSGQP---LLGVSGYGERRPLPEAQGTTEEDYRRNRRIDL 270 >gi|46201868|ref|ZP_00208284.1| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum magnetotacticum MS-1] Length = 262 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 8/121 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARD 283 I+ + N FD S L V+ I +++ + I + GHTD+ Sbjct: 14 IARVSFSNQIFFDSDSDRILKSGESVIGAISRLISADQTKPHIMVIGHTDS---SGGDLY 70 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 N LS RA + L+ GV + I ++ G + ++ + NRR++ L+ R Sbjct: 71 NLELSRRRAEAVAAQLVLQGVPHEHI-QLVGMGKSQPVASNSTAAGKAQNRRVEFLISAR 129 Query: 342 Q 342 + Sbjct: 130 R 130 >gi|78061292|ref|YP_371200.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77969177|gb|ABB10556.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 220 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 7/114 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 ++ +F + P L ++ A T +S+ G TD+ N L Sbjct: 110 VNLSGDALFATDHATLAPTARESLDRLLSERADHTYSQVSVTGFTDSV---GSDDYNLAL 166 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDILVE 339 S RA S L G+ D ++ ++G A A+ ++NRR++I ++ Sbjct: 167 SKRRAESVATYLKAHGLKTDSLT-VTGRGKADPVASNATPEGRASNRRVEIRLQ 219 >gi|83592206|ref|YP_425958.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|83575120|gb|ABC21671.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 220 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ +S+ L +++ L +IG +L + +I I GHTDA+ + N LS RA + Sbjct: 118 LFEINSAEILVKSLPYLNQIGTLLREESALILVIEGHTDAN---GPSDYNLALSRKRAEA 174 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 L+ S + R+ + G L S P + NRR+ Sbjct: 175 VADYLIGSFAIPPARL-RTEGKGESALLRPSSPTHPDNRRV 214 >gi|319426005|gb|ADV54079.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 289 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + + L ++ E LA+ V + + +TD+ R++ N R+S +RA S Sbjct: 184 YNEGGTDLTRFSKQQLTRVQEYLAYDPNVELVLVDAYTDSYGGRSV---NQRVSDNRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + + SG+ +DRI + G R +++ + NRR+ I + Sbjct: 241 VKEFFLSSGIPQDRILTV-GHGERRHVASNEDIDERARNRRVVIRI 285 >gi|221209716|ref|ZP_03582697.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221170404|gb|EEE02870.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 405 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 +R LA+ + L VA V+ + ++ R MF + Sbjct: 252 EAQRLSPFDALARNLEQRLRDEVAAGNVELIRDPARH------VLTLRFAGMFVPGAMTV 305 Query: 245 LPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMK 301 P V+ G +A E V+ + G+ D++P + + N +S RA ++L+ Sbjct: 306 APWGASVVASAGREIASIAEGAVVRVVGYADSAPAGSARQVSNQAISEARAEDVARILVA 365 Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 +GV ++ G + + + NRR++++V Sbjct: 366 AGVPA-HGLRVEGRGDADALADNGTESGRARNRRVEVIV 403 >gi|146292701|ref|YP_001183125.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|145564391|gb|ABP75326.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 289 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + + L ++ E LA+ V + + +TD+ R++ N R+S +RA S Sbjct: 184 YNEGGTDLTRFSKQQLTRVQEYLAYDPNVELVLVDAYTDSYGGRSV---NQRVSDNRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + + SG+ +DRI + G R +++ + NRR+ I + Sbjct: 241 VKEFFLSSGIPQDRILTV-GHGERRHVASNEDIDERARNRRVVIRI 285 >gi|75676006|ref|YP_318427.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74420876|gb|ABA05075.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 321 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ L +I ++L E + I GHTD+ + N LS RA S Sbjct: 216 LFDFDKDTMRSDSKPQLDEIAKLLKAQPELKVLIVGHTDS---KGALDYNRDLSYRRARS 272 Query: 295 AYQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDIL 337 + L + GV+ R++ + G A ++ + NRR++++ Sbjct: 273 IVESLSREHGVAAARLTPLGVGMAAPMATNRTEEGRALNRRVELV 317 >gi|86141593|ref|ZP_01060139.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Leeuwenhoekiella blandensis MED217] gi|85832152|gb|EAQ50607.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Leeuwenhoekiella blandensis MED217] Length = 224 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 17/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K++ A++I + G E GI+++ D+ + F + + Sbjct: 70 KKMDKQAQRIEEEIPGA---------EVERVDDGIVVN-FDENSGVYFATNKYNINSASQ 119 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L + V+ + + + GHTD++ A N LS +RA + L+ G++ R Sbjct: 120 ETLNGLSRVMQEYPQTNVLVVGHTDST---GSADYNMTLSKNRAQAVTNYLVSQGIASGR 176 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + + + K ++ S NRR+ + + Q Sbjct: 177 FT-TQWYGEEQPKYTNETAEGRSKNRRVTLAIVPNQ 211 >gi|120599225|ref|YP_963799.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|120559318|gb|ABM25245.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] Length = 289 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + + L ++ E LA+ V + + +TD+ R++ N R+S +RA S Sbjct: 184 YNEGGTDLTRFSKQQLTRVQEYLAYDPNVELVLVDAYTDSYGGRSV---NQRVSDNRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + + SG+ +DRI + G R +++ + NRR+ I + Sbjct: 241 VKEFFLSSGIPQDRILTV-GHGERRHVASNEDIDERARNRRVVIRI 285 >gi|91794084|ref|YP_563735.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91716086|gb|ABE56012.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 377 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 8/112 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 +FD S++ P ++ +G+ L + I GH N LS Sbjct: 260 DLGKVLFDNDSAVIKPGYYADMEILGDHLVKYPAHTVIIEGHASNV---GKPDYNMSLSE 316 Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 RA + LM K G+S RI + G+ + K+A + + NRRI+ +V Sbjct: 317 RRAQAVATALMTKYGISASRIKSV-GYGVTKPKMAGNTAEAHRVNRRIEAIV 367 >gi|296130397|ref|YP_003637647.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109] gi|296022212|gb|ADG75448.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109] Length = 355 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 8/182 (4%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + +E + P + A+ + L + + + + ++ V Sbjct: 173 AGAVPVEDGALEPVADEPAPRPGQGWPALPDPELLATADPEERTFVLTRRSSDLAGDVQV 232 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASP 276 E + + I + + +F S+ PE L ++ ++ A T + + G+TD+ Sbjct: 233 EESPEQVGIVL---DASVLFAFDSAELAPEAQSRLAEVAADIAARGTGEVVVTGYTDSD- 288 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335 N LS RA S L + S + G + +D ANRR+ Sbjct: 289 --GDRSYNQTLSEQRAQSVVAALQPAAGGAVTFSAVGEGESDPVASNDTDEGKQANRRVT 346 Query: 336 IL 337 I+ Sbjct: 347 IV 348 >gi|206562090|ref|YP_002232853.1| putative outer membrane protein [Burkholderia cenocepacia J2315] gi|198038130|emb|CAR54078.1| putative outer membrane protein [Burkholderia cenocepacia J2315] Length = 239 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 5/107 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P+ L + ++ + ++I G TD++ N LS RA + Sbjct: 136 FAFDSAALTPDARAQLDRFVDINSGIEFRRVAITGFTDST---GSNTHNLALSASRARNV 192 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 L +G+ G A A+ + NRR++I ++ + Sbjct: 193 MNYLRSNGLKAQSFVSEGLGAADPVASNATAEGRAQNRRVEIRIDAK 239 >gi|302184719|ref|ZP_07261392.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 300 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 G+ E +I+ + ++ + NRR+ + +E Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVSVHLER 281 >gi|255531961|ref|YP_003092333.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344945|gb|ACU04271.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 631 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 F+ + LP ++ L + ++L +++ I I+GHTD + N RLSL R Sbjct: 524 KNIFFNTNEYTLLPASLTELNTLQQLLKNNASLCIEIQGHTDNV---GNDQQNERLSLQR 580 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + Y L++ + R++ G+ ++ A+D NRR ++ Sbjct: 581 AKAVYDYLVQEKIEPQRLT-FKGYGENKPIAANDTDAHRRQNRRTSFII 628 >gi|91226490|ref|ZP_01261239.1| putative lipoprotein [Vibrio alginolyticus 12G01] gi|91189122|gb|EAS75403.1| putative lipoprotein [Vibrio alginolyticus 12G01] Length = 219 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 115 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 171 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 172 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 219 >gi|320156521|ref|YP_004188900.1| outer membrane protein-like peptidoglycan-associated (lipo)protein [Vibrio vulnificus MO6-24/O] gi|319931833|gb|ADV86697.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Vibrio vulnificus MO6-24/O] Length = 208 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ E L I ++G+ + A N LS RA Sbjct: 83 RVLFANDSDKINPVFRKQIKEMSEFLKLYPSTSIELQGYASRT---GNAEHNLDLSKRRA 139 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 + ++L+ G+++ R+ +I GF L + ++ NRR+ Sbjct: 140 NNVREMLIGYGIAQSRV-RIVGFGDSALASEGTDEVSHALNRRV 182 >gi|312200527|ref|YP_004020588.1| OmpA/MotB domain protein [Frankia sp. EuI1c] gi|311231863|gb|ADP84718.1| OmpA/MotB domain protein [Frankia sp. EuI1c] Length = 188 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD S +P+ ++KI + + I G TD N LS RA + Sbjct: 91 LFDVGSDKLVPDAAAEIEKIVPAIQTHDGPVQILGFTDGV---GTDSYNQDLSQRRADAV 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 +L+ +GV + I + D R+++I+++ Sbjct: 148 KAILVGAGVKASLLQAIGKGSDGAPAGVPDSTR---RKVEIVLK 188 >gi|92114381|ref|YP_574309.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91797471|gb|ABE59610.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 830 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 21/198 (10%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + +E + ++ ++ D+ + S+ + N + +L + Sbjct: 640 PAIQRRTGAEIDEGRADYRYAGRQVDFYSQQIHASDVPRITSNAFLVSSSRNYIDSLLEQ 699 Query: 219 TTRTGILISIIDQRNTPMFDKSS---SIPLPETIVVLQKIGE-VLAHST-EVISIRGHTD 273 T + I + + +F + L K+ E +L I I GH D Sbjct: 700 TLTSTETIVL---ESDTLFAFGRGDYAGLQQAGQQELDKLAERLLNTQDLGQILITGHAD 756 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330 P N A N +LSL RA + Q L+ GV + + G R + D Sbjct: 757 --PIGNEAA-NQQLSLQRAMTVRQYLIGKGVPAG-LIEAKGAGSERPLVTCDDDQPRAQL 812 Query: 331 ------NRRIDILVEDRQ 342 NRR++I V +Q Sbjct: 813 IECLAPNRRVEIEVRKQQ 830 >gi|329890560|ref|ZP_08268903.1| ompA family protein [Brevundimonas diminuta ATCC 11568] gi|328845861|gb|EGF95425.1| ompA family protein [Brevundimonas diminuta ATCC 11568] Length = 191 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDN 284 ++ ++ F + + PE L ++ + L + + I+GHTD++ + N Sbjct: 78 EVVLSDDSVKFPVNHTELSPEAEQRLAELVQRLRAENANVYLEIQGHTDST---GNDQIN 134 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 RL +RA + + L G++ +R++ IS + + ++ + NRR+ I+V Sbjct: 135 ERLGQERAEAVRRFLSDQGIALNRMATIS-YGASKPVAPNNTREGRAQNRRVAIMVL 190 >gi|292488104|ref|YP_003530981.1| putative type VI secretion system core protein [Erwinia amylovora CFBP1430] gi|292899316|ref|YP_003538685.1| outer membrane protein [Erwinia amylovora ATCC 49946] gi|291199164|emb|CBJ46278.1| putative outer membrane protein [Erwinia amylovora ATCC 49946] gi|291553528|emb|CBA20573.1| putative type VI secretion system, core protein [Erwinia amylovora CFBP1430] gi|312172236|emb|CBX80493.1| putative type VI secretion system, core protein [Erwinia amylovora ATCC BAA-2158] Length = 407 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 9/176 (5%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGIL 225 + + L + + + + KR +IS L ++D I + G Sbjct: 221 LGRAAEPLLRQIWQTPLPQLPGSKRGA--VPQISFDLRQRLSDLIASHQLNVTEGDYGNR 278 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DN 284 + + +F + PE ++ ++ + + I +TD + N Sbjct: 279 VIL---PADSLFSPPGTELTPEGRALIARVASAMESLKGTLLIAVYTDNRLLPSTQFTSN 335 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + S +A + ++M+ + G A R + + + NRR++I + Sbjct: 336 YEYSAAQAQAISNMMMQLIAQPCINVRAEGRADSRELLPNSSAHNRAQNRRVEITL 391 >gi|86132811|ref|ZP_01051403.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85816765|gb|EAQ37951.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 368 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 13/112 (11%) Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + +S+ P ++ ++ +LA + + I HTD+ R A N LS RA S Sbjct: 260 NTNSATLTPAAKNIIDTRLMPLLAENPGVKLEIASHTDS---RGAASSNQDLSERRAQSV 316 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 L+ GV+ + +GF +LK ++ ++ANRR + + + Sbjct: 317 ANYLISKGVNNS-LLVANGFGERKLKNRCADGVSCTERQHAANRRTEFRLIN 367 >gi|163784522|ref|ZP_02179384.1| flagellar motor protein MotB-like protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880208|gb|EDP73850.1| flagellar motor protein MotB-like protein [Hydrogenivirga sp. 128-5-R1-1] Length = 234 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 15/158 (9%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 +D+AK I L ++ + ++ +LI + N F + S E L Sbjct: 74 EDVAKIIKKRLERIL---PIYAYQIDSIENYVLIRLF---NDIAFKEDSYQLTDEAKKAL 127 Query: 253 QKIGEVLAHSTE---VISIRGHT---DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 +I + + + I + GH + S +D W LS+ RA +L+K+G+ + Sbjct: 128 NEIAKKIKKYSGYFDEIRVVGHAYVKNKSKLPRGIKDAWDLSIKRAEVIADILIKNGIKK 187 Query: 307 DRISKISGFAHHRLKIA-SDPMNSA-NRRIDILVEDRQ 342 D+I + + + + +P+ N R++I + +Q Sbjct: 188 DKIV-LEAYGNKKPIYRWKNPILQRMNDRVEIYLNVKQ 224 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 68/183 (37%), Gaps = 8/183 (4%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + +K + +W I ++D M++L+ FF++++ + D YF Sbjct: 1 MARKKKEECPA--APAWLISFSDLMSLLLTFFILLYAMTVLDIKKLMKFLWYFQGERPLE 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T + + + + I ++ + + +I S + + F + Sbjct: 59 TTKTVAVIPPISMMKEDVAKIIKKRLERILPIYA--YQIDSIENYVLIRLFNDIAFKEDS 116 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN----KEENYFLPPLSKEKILAMKRKKRL 192 Q ++ K +L ++K K D + + K ++ + L++KR + + Sbjct: 117 YQLTDEAKKALNEIAKKIKKYSGYFDEIRVVGHAYVKNKSKLPRGIKDAWDLSIKRAEVI 176 Query: 193 QDL 195 D+ Sbjct: 177 ADI 179 >gi|146282405|ref|YP_001172558.1| outer membrane protein OprF precursor [Pseudomonas stutzeri A1501] gi|145570610|gb|ABP79716.1| outer membrane protein OprF precursor [Pseudomonas stutzeri A1501] Length = 315 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASP 276 E + + + D + FD S E+ ++ + + + + ++ GHTD+ Sbjct: 195 EPAPEVVRVEL-DVK----FDFDKSRVREESYSDIKNLADFMQQYPQTTTVVEGHTDSV- 248 Query: 277 FRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 + N RLS RA + VL+ + GV +R++ + G+ R +++ NRR Sbjct: 249 --GTDQYNQRLSERRAEAVRNVLVNEYGVQGNRVNSV-GYGESRPVADNSTEEGRQINRR 305 Query: 334 ID 335 ++ Sbjct: 306 VE 307 >gi|152994404|ref|YP_001339239.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150835328|gb|ABR69304.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 359 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 29/275 (10%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--NQKKQYQRL 127 N + A G D N + ++ ++V L+ N + + Sbjct: 103 NVNLTPYLAAGVGTTDFSNASGHDNVQVNAGGGLKYALNDTVSLRADFRLVNDVEDHHLD 162 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + + ++ D + T +E + ++ +S E ++ Sbjct: 163 NVTSLGVQMTFGGSSRNSTSNDDDYTPVEQTSYTQVEPAAQPQQATQPEVISSEPAEQVQ 222 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 + + +A+ + G I+I F + + + Sbjct: 223 EEP-----------ITASPMAEETTQQPEIVAEPPG-KINIQ-------FGLNKTNVEQK 263 Query: 248 TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305 ++KI L + + I GHTD A N +LS RA + +VL + +S Sbjct: 264 FYPEIEKIAIFLKENPGSTVMIEGHTDN---SGAASYNQKLSEKRAKAIAEVLTNTFEIS 320 Query: 306 EDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 R+ I G+ R + +D ANRR+ ++ Sbjct: 321 ATRVEAI-GYGEERPFVENDTEAHREANRRVVAII 354 >gi|159042678|ref|YP_001531472.1| OmpA/MotB domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157910438|gb|ABV91871.1| OmpA/MotB domain protein [Dinoroseobacter shibae DFL 12] Length = 310 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 + + D R F ++ L + L + + VI++ GHTDA Sbjct: 198 RVVLEDLR----FATGNATLENGQYPSLTALAGFLTENPDLVIALVGHTDAE---GSIDA 250 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338 N LS+ RA + L+ GV+ +R+ G+ R ++ ANRR++ ++ Sbjct: 251 NLALSMRRAEAVRDRLVADYGVASERLRAEGVGYLAPRATNRTEEGRRANRRVEAVL 307 >gi|256027094|ref|ZP_05440928.1| Outer membrane protein [Fusobacterium sp. D11] gi|289765073|ref|ZP_06524451.1| outer membrane protein [Fusobacterium sp. D11] gi|289716628|gb|EFD80640.1| outer membrane protein [Fusobacterium sp. D11] Length = 151 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E + I + D+ FD S+ P+ +L + + + + ++I GHTD + Sbjct: 6 EEPPEEMTIVLDDRALN--FDFDKSVVKPQYNEMLTNLKDFIEKNDYEVTIVGHTD---Y 60 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 N LS RA + L++ G+ RI I A+ + NRR++ Sbjct: 61 IASNAYNMGLSKRRAEAVKAKLIELGLDPSRIVGIVPRGEEEPIADNATTEGRAKNRRVE 120 Query: 336 ILVEDR 341 + R Sbjct: 121 FKLVKR 126 >gi|163741717|ref|ZP_02149107.1| OmpA family protein [Phaeobacter gallaeciensis 2.10] gi|161384890|gb|EDQ09269.1| OmpA family protein [Phaeobacter gallaeciensis 2.10] Length = 183 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + L++ + + I GHTD+ R N RLS RA + Sbjct: 85 FFATNRHRISAAGQQRLREFFQTANARS--FIITGHTDS---RASDEYNMRLSQRRANAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 +V G RI ++ G+ ++ +D + NRR++I+ Sbjct: 140 AKVGQSVG---ARILEVRGYGERDPRVPNDSAANMAQNRRVEII 180 >gi|118616129|ref|YP_904461.1| outer membrane protein a OmpA [Mycobacterium ulcerans Agy99] gi|118568239|gb|ABL02990.1| outer membrane protein a OmpA [Mycobacterium ulcerans Agy99] Length = 332 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P++ VL ++ + L + +++ G+TD N LS RA + Sbjct: 231 FGNDGVSLTPDSNKVLTQVVDKLRACPDAKVTVNGYTDN---SGSEGLNIPLSAQRAQTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L+ GV+ D I+ G ++D NRR++I+V Sbjct: 288 ADFLVAHGVATDHITA-KGLGSANPIASNDTAEGRIKNRRVEIVV 331 >gi|326797243|ref|YP_004315063.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326548007|gb|ADZ93227.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 201 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + P ++K+ + + + + I GHTD A N LS +RA + Sbjct: 80 LFDSGKYVVKPRFYGEVKKLADFMKSNAGSSVVIEGHTDDV---GAADYNEALSQNRADA 136 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 VL+ S + R+ I G+ + ++ + NRR+ Sbjct: 137 IADVLINSFKIDRKRVEAI-GYGESKPIADNETIDGRATNRRV 178 >gi|294789485|ref|ZP_06754721.1| outer membrane porin F [Simonsiella muelleri ATCC 29453] gi|294482565|gb|EFG30256.1| outer membrane porin F [Simonsiella muelleri ATCC 29453] Length = 307 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 13/117 (11%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 + I + +FD S + ++++ E + +++ GHTD+ R Sbjct: 187 EKVTIEL-----KVLFDTDKSFVKSQYYSEIEQVAEYMKRFPNTSVTLEGHTDS---RAS 238 Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS-DPMNS-ANRRI 334 N LS R + +L++ G+ R+ + G+ R + P N NRR+ Sbjct: 239 DEYNIGLSQRRMNAVRDILIRRYGIDGARVHAV-GYGESRPAYPNTTPENMHQNRRV 294 >gi|262394500|ref|YP_003286354.1| outer membrane protein [Vibrio sp. Ex25] gi|262338094|gb|ACY51889.1| outer membrane protein [Vibrio sp. Ex25] Length = 222 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 118 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 174 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 175 RQFLVSQNVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 222 >gi|163745845|ref|ZP_02153204.1| OmpA family protein [Oceanibulbus indolifex HEL-45] gi|161380590|gb|EDQ05000.1| OmpA family protein [Oceanibulbus indolifex HEL-45] Length = 231 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ VL++ + E + GHTD N L + RA + Sbjct: 86 FAFNSAQLDATAQAVLRQQAGWIRQFPEIRFRVYGHTD---LVGSQAYNRALGMRRAQAV 142 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + + + I + NRR Sbjct: 143 VGYLSTLGISPSRLEAVVSYGETQPLIVTQGRERRNRR 180 >gi|86748022|ref|YP_484518.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86571050|gb|ABD05607.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 212 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ + ++ +G+ LA+ + GHTD+ N LS RA Sbjct: 102 FEYNSANISRKAEPAVEALGKALANPDLRGSTFVVAGHTDSI---GSDNYNQDLSERRAD 158 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +VL++ G++ + + G+ + K A +P +++NRR+ ++ Q Sbjct: 159 TIKRVLVEKYGIAGADLVTV-GYGESKPKNADNPTDASNRRVQVVNMTSQ 207 >gi|209964174|ref|YP_002297089.1| OmpA family protein (probable proton motor, MotY) [Rhodospirillum centenum SW] gi|209957640|gb|ACI98276.1| OmpA family protein (probable proton motor, MotY) [Rhodospirillum centenum SW] Length = 355 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLD 290 T FD + P+ VLQ + T I+ + GH D A N RLS+ Sbjct: 251 TVFFDWDKATLTPDAEKVLQSVAA--DARTGGIAALQVTGHADT---SGPADYNQRLSMR 305 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 RA + L+ G+ I I G + + +NRR I+ Sbjct: 306 RAEAVRDYLIAQGIPAGEI-AIEGRGETDPLVPTADGVREPSNRRGVII 353 >gi|171315482|ref|ZP_02904719.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171099482|gb|EDT44217.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 170 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 44 ALKSAGFQETGQGFE---FGASGPILFDFDRYNLKPDVRRIVERIGRTLKSAGINGVRVY 100 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D A D LS RA L+ +G+ RI+ + G + + Sbjct: 101 GYSDDE--GEAAYD-LELSRRRAEVVAIELVDAGLDGKRIAVVGKGKSDPVGDNRTPTGR 157 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 158 AQNRRAAIVVSPR 170 >gi|167035658|ref|YP_001670889.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166862146|gb|ABZ00554.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 163 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 D +F ++ ++++IG+ L + + + GH DA A N +LS Sbjct: 53 DLSGKVLFGSDLDSLNGQSQSIVERIGKALLSVGIQGVRVDGHADA---SGKAAYNQQLS 109 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA S + L+ G+ I G + + NRR+ I+V Sbjct: 110 ERRAQSVTKALVGVGMQPQNIQS-RGLGSTQPVADNRTSAGRTENRRVSIVV 160 >gi|329944219|ref|ZP_08292478.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328530949|gb|EGF57805.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 464 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S + VL + E + ++I GHTD N LS RA + Sbjct: 183 FEVDSDQLSAQADAVLANVVEQIKKYPSGGDLTITGHTDDVA---DDAHNQDLSERRAKA 239 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 L K +SG ++ +D ANRR++I + + Sbjct: 240 VSSRLKKLTDLSTWNESVSGKGESSPRVPNDSDEHRQANRRVEITLTPSK 289 >gi|262401486|ref|ZP_06078054.1| outer membrane protein A precursor [Vibrio sp. RC586] gi|262352307|gb|EEZ01435.1| outer membrane protein A precursor [Vibrio sp. RC586] Length = 109 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 MF S P E I L +I VL + + GHTD++ A N +S RA + Sbjct: 1 MFGFDSVEPSQEFIDQLTEISSVLISYPQAQAKVVGHTDST---GSALYNQNISEHRAQA 57 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L++ GV+ ++ G + ++ +ANRR++I + Sbjct: 58 VVNKLIELGVTPTQLEW-RGEGEFQPVADNNTAEGRAANRRVEITI 102 >gi|260774918|ref|ZP_05883819.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260609173|gb|EEX35331.1| outer membrane protein A precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 321 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE+ + L+++ + + + + G+TD A N +LS RA S Sbjct: 212 FKFDSAELTPESEMALKEVASFMGEYPQATVDVVGYTDT---SGPAVYNQKLSEQRAQSV 268 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 V+ + GV++ RI + G ++ + NRR ++ V Sbjct: 269 ADVIAEYGVNQSRIH-VEGAGESNPIATNETRDGRIENRRAEVTV 312 >gi|260220763|emb|CBA28654.1| hypothetical protein Csp_A08220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 182 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S P++ L I E A + I + GHTD + + N LSL RA + Sbjct: 81 FEPGTSTLTPDSQNQLPGILEQATARAGGDIQVVGHTDRT---GSPQANDTLSLQRAQAV 137 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +L++ G + I G + ++ NRR +I++ Sbjct: 138 RNLLIQRGFEPALVEAI-GRGEREPVVPTEANVNEPRNRRAEIII 181 >gi|239814628|ref|YP_002943538.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239801205|gb|ACS18272.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 217 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ PE L + + + I GHTD+ + A N RLS+ RA + L Sbjct: 114 KSVLKPEGRAKLTDLVSKIRDVNLEVIIAVGHTDS--IGSDAY-NQRLSVRRAEAVKAFL 170 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + G+ +R+ G + + + NRR++I V Sbjct: 171 VSKGIERNRVY-TEGKGEKQPVADNRTKEGRAKNRRVEIEV 210 >gi|32472143|ref|NP_865137.1| outer membrane protein A (OmpA) [Rhodopirellula baltica SH 1] gi|32397515|emb|CAD72821.1| probable outer membrane protein A (OmpA) [Rhodopirellula baltica SH 1] Length = 259 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 14/259 (5%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 QNP + N + ++ N++ Q N +Q + + Sbjct: 4 SQNPYLAGGGTSVWQPPPSTTAVNGIQAQVAELNRRVQLLDDNNRQLTTQLAQSEQQSQ- 62 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK-KISSTLS 204 +L + + + E ++ + + + +++ A + ++ L+ Sbjct: 63 ----VYRDELNLVRKQLSDTTQQYESARIAAQDAQTQARSFQASAQMRGGATIRANTNLN 118 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-- 262 + + G+ E + + + + +F + + P +L L Sbjct: 119 QMAGRLNLGGLKVEQDGEVLRVVLPSDQ---LFAQGTGQLQPSAGAILDPTAAQLRSVFP 175 Query: 263 TEVISIRGHTDASP-FRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKIS-GFAHHR 319 + I I G+TD +P + A +L+ + + L + SG+ E ++ ++ G + R Sbjct: 176 RQRIGIEGYTDNAPMYGGAAGSAHQLTSAQTGAVLDWLTRRSGMPEQQLFTVAQGSNNPR 235 Query: 320 LKIASDPMNSANRRIDILV 338 + ANRRI++++ Sbjct: 236 KDNTTPAGRVANRRIELVI 254 >gi|325067558|ref|ZP_08126231.1| OmpA/MotB domain protein [Actinomyces oris K20] Length = 394 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + VL + E + ++I GHTD N LS RA + Sbjct: 113 FATDSDQLSDQADGVLANVVEQIKKFPSGGDLTITGHTDDVA---DDAHNQDLSERRAKA 169 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 + L K +SG ++ +D ANRR++I + + Sbjct: 170 VSERLKKLTDLSKWKESVSGKGESSPRVPNDSDEHRQANRRVEITLMPSK 219 >gi|260777706|ref|ZP_05886599.1| protein F-related protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605719|gb|EEX32004.1| protein F-related protein [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 11/147 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + + +++ S L + + GV +E I++ + D F+ SS+ P+++ L Sbjct: 60 MGQMRTTSYSDLQSFLLKNGVDYEVLPGNHIMVKLTDTIK---FNTGSSMVKPDSMYWLD 116 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +G LA I I GH D++ LS+ RA + + L+ + V+ + I Sbjct: 117 MMGRYLATQPGIDIVIDGHADSTGAPTFNDS---LSMKRAKAVKKQLVSNNVAMNSIY-T 172 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDIL 337 G+ + ++ NRR+++L Sbjct: 173 RGYGEYVPACSNTTSAGKACNRRVEVL 199 >gi|171322789|ref|ZP_02911520.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|171091861|gb|EDT37347.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] Length = 230 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P L ++ +++ G+TD+ + + LS RA + Sbjct: 125 FDTDRADLTPIARDRLDRLISASRGVRVRTVTVNGYTDS--VGSDDYNV-GLSERRASAV 181 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L G+S R G+ +++ + NRR+++ Sbjct: 182 DAYLQSHGLSAGRFVG-RGYGKADPVDSNETAVGRARNRRVEV 223 >gi|183222583|ref|YP_001840579.1| putative outer-membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912618|ref|YP_001964173.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777294|gb|ABZ95595.1| OmpA-family protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781005|gb|ABZ99303.1| Putative outer-membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 670 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 7/101 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + E L + + L H + I GHTD N N LS DRA S Sbjct: 568 FPFNERTLSDEDKKKLDLLADFLIHHKNEKVEIGGHTDN--IGNKEY-NINLSEDRALSV 624 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 YQ L GV ++R+ K+ + + + ++ S NRR+ Sbjct: 625 YQYLRLKGVPKERM-KVQAYHYSQPIADNETEEGRSRNRRV 664 >gi|254302232|ref|ZP_04969590.1| outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322424|gb|EDK87674.1| outer membrane protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 196 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 7/126 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E + I + D+ FD S P+ +L + E + + ++I GHTD + Sbjct: 52 EEPPEEMTIVLDDRALN--FDFDKSFVKPQYDEMLTNLKEFITKNDYEVTIVGHTD---Y 106 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 N LS RA + L++ G+ RI + + + NRR++ Sbjct: 107 IASNEYNMGLSKRRAEAVKAKLIELGLDPSRIVETVARGEEEPVADNSTTEGRAKNRRVE 166 Query: 336 ILVEDR 341 + R Sbjct: 167 FKLVKR 172 >gi|110833683|ref|YP_692542.1| outer membrane protein OprF [Alcanivorax borkumensis SK2] gi|110646794|emb|CAL16270.1| outer membrane protein OprF [Alcanivorax borkumensis SK2] Length = 384 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + L+ + E + + + GHTD++ A N +LS RA + Sbjct: 273 FGHDKTEVRQTSYPSLENLAEDMRQYPSANLVLEGHTDST---GSAAYNKKLSQQRADAV 329 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 VL+ GVS DRI+ + G+ + + + NRR++ +++ Sbjct: 330 KAVLVDKFGVSADRITTV-GYGEEKPISDNKTSEGRAENRRVETILK 375 >gi|254522358|ref|ZP_05134413.1| OmpA domain protein [Stenotrophomonas sp. SKA14] gi|219719949|gb|EED38474.1| OmpA domain protein [Stenotrophomonas sp. SKA14] Length = 432 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F ++ ++ + + L + + HTD+ A N +LS RA + Sbjct: 329 FHAGTATLTGDSRQTIGAVASALRAVPAGARVEVAAHTDS---AGSATTNQQLSQLRAEA 385 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 Q L + GV + +G+ + + D + NRRI Sbjct: 386 VAQALQEQGVGSAALVP-TGYGQEQPIADNRSDHGRALNRRIS 427 >gi|163801699|ref|ZP_02195597.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4] gi|159174616|gb|EDP59418.1| chemotaxis protein MotB-related protein [Vibrio sp. AND4] Length = 244 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 33/187 (17%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234 L ++ ++ D+ I +A NI+ V E + +++ I D +T Sbjct: 40 ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99 Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283 F SSIP T L+ IG VL + + + I GHTD+ + Sbjct: 100 LTFASGKSSIPNDATIQQALKDIGVVLHSAIQKKDRFQYLDTVFIEGHTDSDGIHYRGKG 159 Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329 NW LS DRA S + V G E+ ++ +SG+A R L+ ++ S Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKS 219 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 220 QNRRIDI 226 >gi|13472828|ref|NP_104395.1| hypothetical protein mll3244 [Mesorhizobium loti MAFF303099] gi|14023575|dbj|BAB50181.1| mll3244 [Mesorhizobium loti MAFF303099] Length = 967 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 19/160 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 R + A+++S+ L + + L E I D F +P PE Sbjct: 813 NRARAAAEQLSADGVVLDVSQLQELNLAELNDLREAIQATD----IFFYSGKVVPGPEQT 868 Query: 250 VVLQKIGEVLAH---------STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 VL ++ + + T + GH+DA+ +S RA + +L Sbjct: 869 PVLDRLADQIKEFAENARKSGVTARFMLTGHSDATGRETANAS---ISAARAETVRALLN 925 Query: 301 KSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 K GV+ + + + G + + +S NRR+ I V Sbjct: 926 KRGVAPE-LLLVRGAGTFEPLVPENSQTGSSTNRRVSITV 964 >gi|291336865|gb|ADD96397.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C206] Length = 189 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 8/179 (4%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKG 82 P +W +AD T+LMAFF+++ + K I + Sbjct: 16 PKCPPAGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLR-----EAFGVQK 70 Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + P+ ++ ++ S + + Q + + S+ + Sbjct: 71 VVPVVEQPKGTTVISLEFSPSPTPAITDTLRQQTTELQAPELELQTKTEDSPDGSETDKQ 130 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENY---FLPPLSKEKILAMKRKKRLQDLAKK 198 K+ + +G D +T+L K + K + + L + ++ RKKRL ++ + Sbjct: 131 NKSDFAGEGGEGADQLDATELAKQLKKAIDTGEVTVEMLGENVVINFLRKKRLMKISAQ 189 >gi|50083922|ref|YP_045432.1| putative Outer membrane protein precursor (OmpA-like) [Acinetobacter sp. ADP1] gi|49529898|emb|CAG67610.1| putative Outer membrane protein precursor (OmpA-like) [Acinetobacter sp. ADP1] Length = 355 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L I GHTD + + N RLSL RA Sbjct: 233 RVFFDTNKSNIKDQYKPEIAKVAEKLVEYPNATARIDGHTDNT---GPRKLNERLSLARA 289 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 S L+ + + R+ GFA + + + NRR+ Sbjct: 290 NSVKSALVNEYNIDPARL-ATQGFAWDQPIADNSTKEGRAMNRRV 333 >gi|260890076|ref|ZP_05901339.1| hypothetical protein GCWU000323_01238 [Leptotrichia hofstadii F0254] gi|260860099|gb|EEX74599.1| OmpA family protein [Leptotrichia hofstadii F0254] Length = 155 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 FD S+ P+ +L+ + + + + + I GHTD+ + N L + Sbjct: 46 DSGRLNFDFDKSVVKPQYFELLRNVKDYVEQNNLNLRIIGHTDS---KGTDAYNMALGMR 102 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 RA + L++ G+ RI + +D NRRI Sbjct: 103 RANAVKAKLLEFGLDPARIIGVESMGESDPIAPNDTEQGRFENRRI 148 >gi|153952340|ref|YP_001398779.1| fibronectin-binding protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939786|gb|ABS44527.1| fibronectin-binding protein [Campylobacter jejuni subsp. doylei 269.97] Length = 319 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + +++I +VL + +I GHTD + A N +LS RA S Sbjct: 216 FDFDKTTINLTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 272 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 L K GV + RI + G+ + +++ + NRR+D Sbjct: 273 ANELEKYGVEKSRIKTV-GYGQDNPRSSNNTKEGRADNRRVD 313 >gi|146281586|ref|YP_001171739.1| outer membrane protein [Pseudomonas stutzeri A1501] gi|145569791|gb|ABP78897.1| probable outer membrane protein [Pseudomonas stutzeri A1501] Length = 343 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S L I + L I + GH+D S R + N LS RA + Sbjct: 224 FPSSDVALDALGRAKLDIILQYLRADPSVNRIQLDGHSDNSGNRLV---NRDLSRRRALA 280 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 + L+ +GV E +I+ + +A+ + + NRR+ Sbjct: 281 VQEYLIANGVPEQQIT-VRFHGERYPLVANSSEANRAKNRRVT 322 >gi|83647690|ref|YP_436125.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83635733|gb|ABC31700.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 274 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 16/258 (6%) Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 N R S +++ + ++ + + N +N S + L Sbjct: 9 NKFTRISATLFSVAMIAACSSQNLTPEASPSEDFAVKSAAHNVEVADNNRDVSTSEADEL 68 Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI--SSTLSG 205 D K+ P S + D+ + +T + Sbjct: 69 YSYGLSQADDNPEITTSKAAETINAAGTPTDSTTTEVTSASTTEGNDMTVLVLDDATAAA 128 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 L + + + S E + L++ + L+ Sbjct: 129 LEKEYGGANQFAGVEPPQPRV--------IFYPLEKSNLNQEDMAALKQHADFLSVHPNY 180 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 I I GHTDA A N RLS +RA L+ +G +++ + G+ + S Sbjct: 181 QIQIHGHTDA---SGQATYNERLSEERALRVADYLLNNGARPEQVE-VFGWGSREPLLTS 236 Query: 325 DPMNSANRRIDILVEDRQ 342 + NRR++++ + Q Sbjct: 237 -SHHEKNRRVELIYLNDQ 253 >gi|326801229|ref|YP_004319048.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326551993|gb|ADZ80378.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 177 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 +F+ S + + VL +I + +I GH A N LS+DR Sbjct: 71 KNILFEFDSGVLKTASYSVLDQIVREMKKDPSVKFTINGHAS---LEGSAEHNMALSVDR 127 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A + L+ +G+S D ++ GF + ++ S NRR++I + Sbjct: 128 ANAVKLYLVNAGISPDNLTA-QGFGATKPVATNETEEGRSQNRRVEIKL 175 >gi|302037323|ref|YP_003797645.1| hypothetical protein NIDE1997 [Candidatus Nitrospira defluvii] gi|300605387|emb|CBK41720.1| conserved exported protein of unknown function, putative Outer membrane protein OmpA [Candidatus Nitrospira defluvii] Length = 325 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P++ LQ++ +L + + GHTD +N LS RA++ Sbjct: 223 FDTNKAELRPDSEPTLQEMATLLKGRPQLKLLVVGHTDNI---GSYEENGILSQRRAHAV 279 Query: 296 YQVLM-KSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 L K G+++ R++ + F+ ++ + NRR++++ Sbjct: 280 INALASKHGIAKARLTPVGDSFSAPIASNKTEEGRAKNRRVELV 323 >gi|332886461|gb|EGK06705.1| hypothetical protein HMPREF9456_00579 [Dysgonomonas mossii DSM 22836] Length = 224 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 8/136 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + G E+ G I + + +F +SS + L L ++ + + I Sbjct: 84 EQINGAQVESINDGQAIKVT-FESGILFATNSSTLSSASQSALSNFAASLNNNPDTDVQI 142 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326 GHTD + I LS RA + Y L GVS R+ GF + + Sbjct: 143 YGHTDNTGSDAINNP---LSEKRAQAVYNFLQTKGVSGSRMVS-QGFGSTQPVADNSSVA 198 Query: 327 MNSANRRIDILVEDRQ 342 + NRR+++ + + Sbjct: 199 GRAQNRRVEVYILPNE 214 >gi|113868486|ref|YP_726975.1| outer membrane protein and related peptidoglycan-associated proteins [Ralstonia eutropha H16] gi|113527262|emb|CAJ93607.1| outer membrane protein and related peptidoglycan-associated proteins [Ralstonia eutropha H16] Length = 177 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++K F T G + + D +F + + E +Q++G L + E + + Sbjct: 51 VLKQEGFALTDEGWELGLSD---KLLFGFNEDLIDAERAANVQRLGRALKGAGIERLRVD 107 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 GHTD A N LS+ RA + ++L +G + + I + G R + Sbjct: 108 GHTDD---AGSAEYNQSLSVRRAEAVARLLAGAGFAPENIE-VRGRGKSRPVADNRTAAG 163 Query: 328 NSANRRIDILV 338 S NRR+ I+V Sbjct: 164 RSENRRVAIVV 174 >gi|170721680|ref|YP_001749368.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169759683|gb|ACA72999.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 831 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 ++ + + + +I+ + R D+ + + + + N + +L ++ Sbjct: 642 GKRMDAAGGESPANQDYLYASRQIVFYSDQIREPDVPRILDNAFLMSSSRNYINSLLTQS 701 Query: 220 TRTGILISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDA 274 R+ I I + +F + + E L I L ++ I I GH D Sbjct: 702 LRS---IETITLESDTLFAFARADFQSLKSEGQNQLSAIASKLLNTPNIGKIIISGHADQ 758 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---- 330 A+ N ++S RA + L+ GV + + G + + D Sbjct: 759 L---GDAQGNLQVSRQRAQTIRTYLVGKGVPAE-LVSAQGEGSRKPLVNCDMQQPRAQLI 814 Query: 331 -----NRRIDILV 338 NRR++I V Sbjct: 815 KCLEPNRRVEIEV 827 >gi|300866278|ref|ZP_07110987.1| putative Outer membrane protein F [Oscillatoria sp. PCC 6506] gi|300335726|emb|CBN56147.1| putative Outer membrane protein F [Oscillatoria sp. PCC 6506] Length = 314 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 ++ + +F+ SS P T V+L I ++ + + I GHTD +DN Sbjct: 201 MVTLPSDVLFEVGSSALRPGTNVILDNLIADLQNYEGATVRIAGHTDD---AGEVKDNQN 257 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338 LS RA + Q L K+ + E G+ R + ++ NRRI++ + Sbjct: 258 LSFARAQAVEQYLSKT-LGEKYHWVAIGYGESRPSVENTTEANRQRNRRIEVAI 310 >gi|149372847|ref|ZP_01891868.1| OmpA family protein [unidentified eubacterium SCB49] gi|149354544|gb|EDM43109.1| OmpA family protein [unidentified eubacterium SCB49] Length = 235 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 18/157 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ A++I S + G E GI+I+ D+ + FD + + Sbjct: 81 NKMDKQAQEIESEIPGA---------EVERVDDGIVIT-FDENSGVYFDTAKYNINTASQ 130 Query: 250 VVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSED 307 L K+ VL + + GHTD+ N LS RA + G+S Sbjct: 131 QNLDKLAGVLQEYVDTNVLVVGHTDSV---GSEDSNMLLSQRRAQAVTNYFTSTKGLSSS 187 Query: 308 RISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 R + + + A+ + NRR++I++ + Sbjct: 188 RFT-TNWYGEQTPVGDNATPEGRAQNRRVNIVIVPNE 223 >gi|118593012|ref|ZP_01550399.1| hypothetical protein SIAM614_29626 [Stappia aggregata IAM 12614] gi|118434319|gb|EAV40973.1| hypothetical protein SIAM614_29626 [Stappia aggregata IAM 12614] Length = 192 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292 F S+ P + + I + L H+ I GHTDA + N LS+ RA Sbjct: 87 FHFDSATIAPASYETVGLIADAL-HTPYLQGQTFFIVGHTDA---KGTREYNLELSIKRA 142 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + L+ + V + + + G +L+ S+P + NRR+ ++ Sbjct: 143 EAVRDALVTTFQVPAEYLFAV-GLGEEQLRDPSNPDAAVNRRVQLI 187 >gi|121602322|ref|YP_988503.1| peptidoglycan-associated lipoprotein [Bartonella bacilliformis KC583] gi|120614499|gb|ABM45100.1| peptidoglycan-associated lipoprotein [Bartonella bacilliformis KC583] Length = 174 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 7/114 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS+ + +L + E L I I GH D R N L R Sbjct: 64 DRVFFSLDSSVIEADAQRILVRQAEWLLLYPHHTIMIEGHADD---RGTREYNLALGQRR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L+ GVS R+ +S + R D ++ + NRR+ I + +G Sbjct: 121 AIAVRDYLVSLGVSPQRMKTMS-YGKERPVAVCDDISCWNQNRRVVISITSGRG 173 >gi|288940691|ref|YP_003442931.1| peptidoglycan-associated lipoprotein [Allochromatium vinosum DSM 180] gi|288896063|gb|ADC61899.1| peptidoglycan-associated lipoprotein [Allochromatium vinosum DSM 180] Length = 177 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P+ + V++ L +++ GHTD R N LS RA S Sbjct: 77 FDYDTAEIKPQYLDVIRTHARYLGSQPGTRVTLEGHTDE---RGTREYNLALSDQRADSV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + ++ GV ++++ I + R S NRR+ I Sbjct: 134 RRFMLAEGVPANQMT-ILSYGEERPADPGHSEQSWRLNRRVII 175 >gi|160939630|ref|ZP_02086978.1| hypothetical protein CLOBOL_04522 [Clostridium bolteae ATCC BAA-613] gi|158437421|gb|EDP15185.1| hypothetical protein CLOBOL_04522 [Clostridium bolteae ATCC BAA-613] Length = 281 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 80/216 (37%), Gaps = 19/216 (8%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + ++++ Q + + T + DL E + E+ PL + + Sbjct: 41 KLEEVASAMQRQLGIEAKTEIEDVPSDLKYPVVGEGAQAPEDAEA--PLQQTQQQYQASA 98 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + D+A+ I + D + + + I +N +F ++ + Sbjct: 99 REMADMARDIQTYFDSENLDA-----VVTNSENAVYIRF---KNDLLFAPDNANLTDASK 150 Query: 250 VVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVS 305 +L +G +L + I I GHT A ++ D LS +RA + L + G+ Sbjct: 151 SMLDAVGIMLKEKQDNILAIYINGHT-AQAANSLINDRL-LSSERADNVAIYLEEQVGIP 208 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 ++ G+ + + NRR+D+++ Sbjct: 209 PKKLI-CRGYGKYYPIADNTTREGREQNRRVDMIIL 243 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 7/214 (3%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81 W YAD +T+++ FF++++ I+ + + + + + A Sbjct: 2 KRQKDEEGGQEWLNTYADMITLVLTFFVLLYSISNVNLTKLEEVASAMQ--RQLGIEAKT 59 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 I D + + + + ++ + + ++ + Y + Sbjct: 60 EIEDVPSDLKYPVVGEGAQAPEDAEAPLQQTQQQYQASAREMADMARDIQTYFDSENLDA 119 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 NS + K+ ++ L + M ++K+ LA I+ Sbjct: 120 VVTNSENAVYIRFKNDLLFAPDNANLTDASKSMLDAVGI-----MLKEKQDNILAIYING 174 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 + I +L + I + +Q P Sbjct: 175 HTAQAANSLINDRLLSSERADNVAIYLEEQVGIP 208 >gi|170739168|ref|YP_001767823.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168193442|gb|ACA15389.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 213 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S+ P+ + V++ +G L+ S VI I GHTDA+ N LS RA Sbjct: 102 FAYNSAQIGPKALPVVKVLGATLSRPQMSGSVILIVGHTDAN---GSDHGNQVLSERRAE 158 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + Q ++ + GV + + G+ LK A+ P NRR+ Sbjct: 159 AVKQYIVHNYGVPAANLVAV-GYGKRHLKDAARPTAPENRRVT 200 >gi|91217237|ref|ZP_01254198.1| OmpA family protein [Psychroflexus torquis ATCC 700755] gi|91184580|gb|EAS70962.1| OmpA family protein [Psychroflexus torquis ATCC 700755] Length = 616 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 12/132 (9%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 ++ E T T I I+ + FD PE L K+ E+L + I + HTD Sbjct: 491 LVPEMTSTEAKILIL--QERIFFDYDKVNIKPEAAFELDKLIEILKENENINIQVVSHTD 548 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMN 328 R N +LS DRA S L+++GV +R+S G L S+ + Sbjct: 549 E---RGSGAYNMKLSQDRAGSTVAYLIENGVDPERLSS-EGKGKSELIKDCISGCSEEEH 604 Query: 329 SANRRIDILVED 340 NRR + + D Sbjct: 605 EENRRSEFKIVD 616 >gi|294673757|ref|YP_003574373.1| OmpA family protein [Prevotella ruminicola 23] gi|294474249|gb|ADE83638.1| OmpA family protein [Prevotella ruminicola 23] Length = 226 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V T G+ + + +F + + + LQ+ VL +++ ++I GHT Sbjct: 86 QVETITDANGLEAVKVTFDSGILFATNKADLNASSKSSLQQFATVLKNNSACDVAIYGHT 145 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D + I LS++RA S L GV +I + G + Sbjct: 146 DNTGSDAINNP---LSVNRAKSVSNYLKSLGVPASQIKSVDGQGSTNPVADNSTAEGRKQ 202 Query: 331 NRRIDI 336 NRR+++ Sbjct: 203 NRRVEV 208 >gi|153836901|ref|ZP_01989568.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] gi|260362576|ref|ZP_05775496.1| outer membrane protein [Vibrio parahaemolyticus K5030] gi|260878366|ref|ZP_05890721.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|260896123|ref|ZP_05904619.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|260901510|ref|ZP_05909905.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|149749859|gb|EDM60604.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] gi|308088130|gb|EFO37825.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308090275|gb|EFO39970.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308107674|gb|EFO45214.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|308115286|gb|EFO52826.1| outer membrane protein [Vibrio parahaemolyticus K5030] Length = 205 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S++ + ++ L I I+G+ AS N LS RA + Sbjct: 83 LFDNDSALINQMFKNKIDELAAFLKKYPTTSIEIQGY--ASKVGRAEY-NLNLSRHRAEN 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 +L++ G+ DR+ I F +L ++ NRR+ V +QG Sbjct: 140 VRNLLIEKGIPGDRL-AIIAFGDTQLAEPGMDRVSHALNRRVTATVVGQQG 189 >gi|117921584|ref|YP_870776.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117613916|gb|ABK49370.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 373 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + F S++ E ++++ + + E + I GH N L Sbjct: 254 QEDVGSIQFANDSAVVKKEYYKDIERLANYMNKNPEFTVEIAGHASNV---GKPEYNMVL 310 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 S RA + ++L++ G+S+ R++ +G+ + +A D ++ANRRI+ +V + Sbjct: 311 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGDSKEAHAANRRIEAIVTTTE 367 >gi|32265934|ref|NP_859966.1| hypothetical protein HH0435 [Helicobacter hepaticus ATCC 51449] gi|4809140|gb|AAD30109.1|AF134212_1 membrane-associated protein map18 [Helicobacter hepaticus] gi|32261983|gb|AAP77032.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 153 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD + ++K L + + + GHTD+ + + A N+ L RA Sbjct: 49 KVLFDFDKYDIRSDMEDRVEKSAAALKSTGAKVVLEGHTDS--YGSDAY-NYALGTKRAN 105 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 + L GV+ +I +S + + SD N NRR++ Sbjct: 106 AVKNALTTRGVNASQIKTVS-YGESKPTCTSDTPECNQENRRVE 148 >gi|114048845|ref|YP_739395.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113890287|gb|ABI44338.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 230 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I I++ N F + VL + V ++ +++ G+TD+ Sbjct: 106 VSVTRDGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 163 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N RLS RA LM GV+ R+ G A+ + NRR Sbjct: 164 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRR 220 Query: 334 IDILVED 340 ++I++ Sbjct: 221 VEIVLTP 227 >gi|332520508|ref|ZP_08396970.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043861|gb|EGI80056.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 743 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 13/104 (12%) Query: 238 DKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 D S+ P + +I VLA + I HTD+ R N LS RA + Sbjct: 636 DLGSATLTPAARAEIDRILLPVLAD-GVSVEIASHTDS---RGSKASNRSLSERRAQAVT 691 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333 L+ G++ RI +GF RL ++ + NRR Sbjct: 692 NYLISKGINSSRIVS-NGFGESRLLNNCSDGVSCTERDHRINRR 734 >gi|163786938|ref|ZP_02181386.1| hypothetical protein FBALC1_17172 [Flavobacteriales bacterium ALC-1] gi|159878798|gb|EDP72854.1| hypothetical protein FBALC1_17172 [Flavobacteriales bacterium ALC-1] Length = 278 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 19/142 (13%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 V ++ + +L + G I + + +F S E+ VL KI +LA T Sbjct: 139 KEVKEDNTETLLKGELKEGDKILL----DNLLFRTGYSYLTKESKPVLDKIAVILAERTN 194 Query: 265 V-ISIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 V +I GH DA + R+ LS+ RA Y L+K GV R+ + G Sbjct: 195 VYFTIEGHVCCTQGERDAIDRKTKKRN---LSVARAKYIYDYLVKKGVRPYRMKFV-GMR 250 Query: 317 HHRLKIASDPMNSANRRIDILV 338 + RR++ILV Sbjct: 251 RKEPLGGEPEFD---RRVEILV 269 Score = 46.4 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P E +L + +V E ISI G D R N LS RA + V + Sbjct: 35 PETEHSRLLLFLSKVEEMDIEKISIYGFCDD---RGSDNYNLVLSQQRADAIKTVFSNNE 91 Query: 304 VSEDRISKISGFAHHRLKIASDPMNSA----NRRIDILVED 340 E I+ + G L I + S NR+++I+V+ Sbjct: 92 FDESVITNVDGKGEILLNIVHEENLSKIRGLNRKVEIIVKP 132 >gi|28900810|ref|NP_800465.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809256|dbj|BAC62298.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD 2210633] Length = 215 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S++ + ++ L I I+G+ AS N LS RA + Sbjct: 93 LFDNDSALINQMFKNKIDELAAFLKKYPTTSIEIQGY--ASKVGRAEY-NLNLSRHRAEN 149 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 +L++ G+ DR+ I F +L ++ NRR+ V +QG Sbjct: 150 VRNLLIEKGIPGDRL-AIIAFGDTQLAEPGMDRVSHALNRRVTATVVGQQG 199 >gi|207725016|ref|YP_002255413.1| chemotaxis (motility protein b) transmembrane (partial sequence) [Ralstonia solanacearum MolK2] gi|206590245|emb|CAQ37206.1| probable chemotaxis (motility protein b) transmembrane (partial sequence) [Ralstonia solanacearum MolK2] Length = 81 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%) Query: 8 NQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQ 67 ++ + I+ ++ ++ G+WKI YADF+T +MAFFL+MW++++ Sbjct: 2 SKSSTPTFIVIRRNKKGGHGHHGGAWKIAYADFVTAMMAFFLLMWLLSSVTKAELVVGRN 61 Query: 68 YFNPFGKNLMTASKGI 83 F ++ G+ Sbjct: 62 VFPHAAESGAVRRGGV 77 >gi|113969010|ref|YP_732803.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113883694|gb|ABI37746.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 230 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I I++ N F + VL + V ++ +++ G+TD+ Sbjct: 106 VSVTRDGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 163 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N RLS RA LM GV+ R+ G A+ + NRR Sbjct: 164 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRR 220 Query: 334 IDILVED 340 ++I++ Sbjct: 221 VEIVLTP 227 >gi|319954930|ref|YP_004166197.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319423590|gb|ADV50699.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 366 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%) Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + S+ E ++ ++ VLA + + + HTD+ + N LS RA + Sbjct: 258 NSGSATLTSEAKSIIDNRLMPVLAQNPGVKVELASHTDSQ---GASSSNQDLSERRAKAV 314 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333 L+ GV+ + +G+ +L + ++ANRR Sbjct: 315 ADYLISKGVNSS-LLVANGYGETKLLNRCKDGVSCTAREHAANRR 358 >gi|163802616|ref|ZP_02196508.1| flagellar basal body P-ring biosynthesis protein A [Vibrio sp. AND4] gi|159173699|gb|EDP58518.1| flagellar basal body P-ring biosynthesis protein A [Vibrio sp. AND4] Length = 315 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287 T F +S+ PE+ L + L + + + G+TD A N ++ Sbjct: 198 TQTMGTGSFALNSTTLKPESASKLDDLVAFLNEYPQATVGVIGYTDT---SGPAAYNQKV 254 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S RA S L++ G+ RI + G + +++ NRR++++V Sbjct: 255 SEKRAESVANALVEKGIDASRI-QARGEGENNPIASNETREGREQNRRVEVVV 306 >gi|89052772|ref|YP_508223.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88862321|gb|ABD53198.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 315 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 10/134 (7%) Query: 214 GVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 GV + T ++ + + P+ F+ +S E L + LA I + Sbjct: 183 GVDDSPSPTDLIERLRTTGSAPLDDLQFETGASQLSGERYGSLTALAAFLAEDPARSIVL 242 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI-SKISGFAHHRLKIASDP 326 GHTDA N LS RA + Q L GV ++ + GF R + Sbjct: 243 VGHTDAL---GSLSGNIALSRSRALAVLQFLTGELGVDPAQVEFQGIGFLSPRASNTTPE 299 Query: 327 MNSANRRIDILVED 340 ANRR+++++ Sbjct: 300 GREANRRVEVVLTT 313 >gi|163788754|ref|ZP_02183199.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] gi|159875991|gb|EDP70050.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] Length = 636 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 15/121 (12%) Query: 225 LISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRN 279 LI +ID N FD S + L+ I +V H + +I I HTD+ R Sbjct: 509 LIPLIDFSQIVINPIFFDFDKSKIRTDAQYELENIVDVMRRHKSMIIKIESHTDS---RG 565 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANR 332 + N +LS RA S L+ GV +RI G+ +L ++ + NR Sbjct: 566 RDKYNLKLSDRRAKSTRDYLISRGVEANRIESAIGYGETQLLNNCGNRVKCTEEEHQVNR 625 Query: 333 R 333 R Sbjct: 626 R 626 >gi|114776885|ref|ZP_01451928.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] gi|114552971|gb|EAU55402.1| flagellar motor protein [Mariprofundus ferrooxydans PV-1] Length = 200 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 22/196 (11%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 S + + + + L+ + + I+ + A + V Sbjct: 13 GPSEPESTAAPAGDQQLASENEQLGAEVAALRAELKQVNQDIADKKAQATASPKPERVAT 72 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDAS 275 R + +S F E+ L ++ + I +RG+TD Sbjct: 73 PVDRLWVTVS---------FRSGYMELTRESRKALSRLAKKFLSKPREQSIEVRGYTDDE 123 Query: 276 PFRN----------IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIAS 324 P + N LS RA + Q L+ + + D + + G +++ A+ Sbjct: 124 PIGGYPGHRHKPHHPYKTNMALSHARATNVAQALIDACIPNDSVRALGFGASNYVADNAT 183 Query: 325 DPMNSANRRIDILVED 340 NRR +I + Sbjct: 184 AEGRQRNRRAEIHLVR 199 >gi|170695384|ref|ZP_02886530.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170139784|gb|EDT07966.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 248 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P L + + +++ G+TD + N LS RA + Sbjct: 145 FATDSATLSPIAKENLDHFMAANKGANLRRVTVTGYTDKT---GSEAHNLALSKARAEAV 201 Query: 296 YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338 Q L G+ ++ +++ G A A+ S NRR+D+ V Sbjct: 202 VQYLRDGGLEGEQFVAQGLGSADPVASNATAEGRSQNRRVDVRV 245 >gi|330989073|gb|EGH87176.1| OmpA/MotB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 831 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 24/268 (8%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++N P ++ ID + VD + S + + + +Q++ Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + K + ++ + + ++++L + L+ Sbjct: 626 KARIPDYWYPAIYKQAPHDTGMSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683 Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261 + + + + I I + +F + L I L + Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH D A+ N ++S RA + L+ G+ + + + G ++ Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSKQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799 Query: 320 LKIASDPMNSA---------NRRIDILV 338 + D NRR++I V Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827 >gi|330954871|gb|EGH55131.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 831 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 24/268 (8%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++N P ++ ID + VD + S + + + +Q++ Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + K + +++ + + ++++L + L+ Sbjct: 626 KARIPDYWYPAIYKQVQRDTNVSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683 Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261 + + + + I I + +F + L I L + Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH D A+ N ++S RA + L+ G+ + + + G ++ Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSRQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799 Query: 320 LKIASDPMNSA---------NRRIDILV 338 + D NRR++I V Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827 >gi|228474110|ref|ZP_04058851.1| OmpA/MotB domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228274624|gb|EEK13465.1| OmpA/MotB domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 668 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 38/274 (13%) Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S G P + + + + + + G ++ L + + LS+SQQ Sbjct: 419 SMGFLSSNRPGGKGKDDIYSFIQNRPLEFDCYKVIKGVVKDADTHETLSDVLLTLSDSQQ 478 Query: 140 SE-----HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 E + N + D + ++ ++ ++ + + ++ L+ Sbjct: 479 KEITRKTNEANGTFDFGKNPVDCDDTFVFVRAQKEDYAVAEEQINIRQNGEIHQEIFLKS 538 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + KK++ V D++ K E FD S P+ V L K Sbjct: 539 IKKKVT------VGDDLAKFFNIEII---------------YFDFDKSNIRPDAAVDLAK 577 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 I EV+ I+I+ HTD+ R N LS RA S + +++ G+ R++ Sbjct: 578 IVEVMKEHPTIKIAIKSHTDS---RGSDAYNLALSDRRAKSTLEWMVQQGIDRSRLTA-K 633 Query: 314 GFAHHRLKIA-------SDPMNSANRRIDILVED 340 G+ +L S+ + NRR + ++ + Sbjct: 634 GYGETQLVNGCSNGVPCSEEEHQKNRRSEFIITE 667 >gi|90413724|ref|ZP_01221712.1| Putative OmpA family protein [Photobacterium profundum 3TCK] gi|90325193|gb|EAS41690.1| Putative OmpA family protein [Photobacterium profundum 3TCK] Length = 241 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++ TR G I + N F S + L+ + V Sbjct: 104 VQETKLRQQLESTGISVTRDGDNIVLN-MPNEITFGIDQSDLSSRAVAALKNVALVAKEY 162 Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I++ G TD++ A N RLS RA LM+ GV+ +R+ G + Sbjct: 163 DKTLINVYGFTDST---GSASYNQRLSQVRASEVSSNLMRGGVAANRVI-TKGMGEAKPI 218 Query: 322 IAS--DPMNSANRRIDILV 338 ++ + + NRR++I++ Sbjct: 219 ASNKTEQGRAENRRVEIVL 237 >gi|148652125|ref|YP_001279218.1| OmpA/MotB domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571209|gb|ABQ93268.1| OmpA/MotB domain protein [Psychrobacter sp. PRwf-1] Length = 537 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 15/189 (7%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 +G D+ + ++K + ++A ++ + I+ + + DN+ Sbjct: 322 EGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDFDAEVKQSIADATTAM--DNLG 379 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 + + + + +I+ F + E VL + EV+ + + I GH Sbjct: 380 ENPDPKDVARALSLQVIN------FAVDKTDIPAENQAVLDRAVEVMKQVPDMQLLILGH 433 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329 TD+ N LS RA + L+ G ++ G ++ N Sbjct: 434 TDSD---GDDAYNKDLSQRRAEAVKAYLVSKGADAAKLM-TKGMGETDPIATNETENGKF 489 Query: 330 ANRRIDILV 338 NRRI+ V Sbjct: 490 RNRRIEFTV 498 >gi|73539729|ref|YP_294249.1| OmpA [Ralstonia eutropha JMP134] gi|72117142|gb|AAZ59405.1| OmpA [Ralstonia eutropha JMP134] Length = 591 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 30/141 (21%) Query: 223 GILISIIDQRN--TPMFDKSSSIPLPETIVVLQKIGE----------------------V 258 G+ +S+ D F SS+ PE V +I + V Sbjct: 153 GLSVSVRDSGAGANGQFASGSSVLTPEARVAFTEIAQQYAYPVQSRQLGPQSTPQDRQAV 212 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I + GHTD + +R N LS RA + + +GV+E ++ G Sbjct: 213 EGLKSRRILLIGHTDDT---GSSRLNADLSEQRARAVAALFRDAGVAESQLY-YQGAGET 268 Query: 319 RLK--IASDPMNSANRRIDIL 337 + + NRR++I+ Sbjct: 269 MPLADNRDEAGRAKNRRVEIV 289 >gi|323494548|ref|ZP_08099653.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546] gi|323311275|gb|EGA64434.1| putative outer membrane protein [Vibrio brasiliensis LMG 20546] Length = 204 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 16/136 (11%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 L +V ++ + E + I +F S P +Q + E LA Sbjct: 60 LGAMVDNDGCGAAIVEEEERQLRI---------LFANDSYEINPIFSDQIQTMAEFLARY 110 Query: 263 -TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I I+G+ AS + N LS RA++ L+ V R++ I G+ RL+ Sbjct: 111 KSASIQIQGY--ASKVGDPDY-NLELSKKRAHAVEDELLSFEVDPKRVT-IVGYGETRLE 166 Query: 322 I--ASDPMNSANRRID 335 + ++ NRR+ Sbjct: 167 AEGDDETSHALNRRVT 182 >gi|293392950|ref|ZP_06637267.1| OmpA family protein [Serratia odorifera DSM 4582] gi|291424484|gb|EFE97696.1| OmpA family protein [Serratia odorifera DSM 4582] Length = 165 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 5/110 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F + P + +QK+G L + GHTD N RLSL R Sbjct: 59 DKVLFGNNIGKLNPASTETVQKMGRALLSVDIVKFRLDGHTDNY---GEDSYNDRLSLRR 115 Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340 A + +L G+ I ++ G + + NRR+ I+V Sbjct: 116 ANAVADLLASVGIPRANIETRGRGKRDPVADNRTASGRAENRRVSIIVTP 165 >gi|114778984|ref|ZP_01453771.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Mariprofundus ferrooxydans PV-1] gi|114550783|gb|EAU53353.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Mariprofundus ferrooxydans PV-1] Length = 466 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 95/274 (34%), Gaps = 14/274 (5%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNI 131 N + + +N E + ++ + + + K +++ ++ + + + Sbjct: 185 VSSNPAARGQLYNESRNSIESARTSQQIAGLGKQLKKKPANVEAWVNSRNSDMETIALAL 244 Query: 132 FYLSNSQQSEHCKNSLTRDS---EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 ++ S + L ++ + + D + I+ + L R Sbjct: 245 KLNLDNTASPGERVKLITEAIGQMRSNYDLQLADARQQIDTLQGNLSELDDTRSSLGQAR 304 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K + ++ + ++ L V T +I + + F S+I E+ Sbjct: 305 YKL--QIKREAEAKIAQLAKLFDPSQVELFLTTDADVII---RMKSIHFPSGSAIIPSES 359 Query: 249 IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L+ + + + + + GHTD+ N LS RA + + L + Sbjct: 360 YDLLELASKAIDLFGDRAVRVEGHTDSM---GNDEYNQNLSERRATTVKEYLDARFSNNK 416 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 R GF ++ ++ S NRRIDI++ Sbjct: 417 RTITSIGFGENKPIANNEKAEGRSKNRRIDIVLL 450 >gi|262275324|ref|ZP_06053134.1| outer membrane protein [Grimontia hollisae CIP 101886] gi|262220569|gb|EEY71884.1| outer membrane protein [Grimontia hollisae CIP 101886] Length = 197 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+I P L K+ L E + ++GHT +SP + N LS+ RA + Sbjct: 78 FANDSAIVEPAYREALDKMAGFLKLYPETFLELQGHT-SSPGSDDYNQN--LSIQRAKAV 134 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRI 334 L++ GV DR++ I G L ++ NRR+ Sbjct: 135 QAHLIEKGVPIDRLTLIGLGEGDLMLADNTETTQFVNRRV 174 >gi|254502312|ref|ZP_05114463.1| OmpA family protein [Labrenzia alexandrii DFL-11] gi|222438383|gb|EEE45062.1| OmpA family protein [Labrenzia alexandrii DFL-11] Length = 190 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286 II+ FD+ S+ E + L + L + + ++ ++GH D + Sbjct: 69 IINVGRRIYFDRGSATVSDEAKMTLDNQAKWLKQNKSWLVKVQGHADDPGSEAAQKT--- 125 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 LS RA + Y L++ GV+ R+ + G+ R D + S NRR+ Sbjct: 126 LSTQRATAVYNALIERGVNAKRMW-VKGYGVERPVTDCDAVTCQSQNRRV 174 >gi|153841945|ref|ZP_01993455.1| inner membrane lipoprotein YiaD [Vibrio parahaemolyticus AQ3810] gi|149745429|gb|EDM56680.1| inner membrane lipoprotein YiaD [Vibrio parahaemolyticus AQ3810] Length = 170 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L+ + +L + + I G+TD++ N LS RA S Sbjct: 66 FSSSSYQLDASIHNTLRGVARILVEYPDTSLVIDGYTDST---GSESYNQTLSERRAESV 122 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 Q L+ V+ R G+ + + NRR++I + + Sbjct: 123 RQFLVSQKVAPGRAIA-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 170 >gi|332879955|ref|ZP_08447639.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681951|gb|EGJ54864.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 650 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ V L KI EV+ + + I IR HTD+ R N +LS RA + Sbjct: 541 FDLDKSDIRPDAAVELAKIVEVMRENPKMKIDIRSHTDS---RGADSYNLKLSDRRAKAT 597 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + ++K G+ R++ G+ +L +D + ANRR + ++ Sbjct: 598 LEWIVKQGIERKRLTA-KGYGETQLVNGCSNGVPCTDEEHQANRRSEFIIVS 648 >gi|127512450|ref|YP_001093647.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126637745|gb|ABO23388.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 286 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 S + + K+ E L++ EV + I +TD+ R++ N ++S RA S Q Sbjct: 183 GGSELTRYSKAQIAKVQEYLSYDPEVELVLIDAYTDSFGGRSV---NKKVSEKRANSVKQ 239 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + + +G+ +RI G R ++D + NRR+ I Sbjct: 240 LFLSAGIPNERIH-TYGHGERRHVASNDTIDERARNRRVVI 279 >gi|209695194|ref|YP_002263123.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] gi|208009146|emb|CAQ79386.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] Length = 355 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 9/112 (8%) Query: 228 IIDQRNTPMFDKSSSIPL-PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 I + +FD +S+ PE + I + +S +SI GHTDA + A N Sbjct: 229 ITAYVDDELFDSNSTTITKPELLDPF--IARLHYYSESTLSIIGHTDA--IGSEAY-NQS 283 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 LS RA S + +KSG+S +RI G ++ N NRR+++ Sbjct: 284 LSEKRAESVAKYFIKSGISNNRI-STQGRGEKDPIAPNNTQNGRYLNRRVEL 334 >gi|320531900|ref|ZP_08032811.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135891|gb|EFW27928.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 332 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + VL + E + ++I GHTD N LS RA + Sbjct: 50 FATDSDQLSAQADSVLASVVEQIKKYPSGGDLTITGHTDDVA---DDAHNQDLSERRAKA 106 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + L K +SG ++ +D NRR++I + + Sbjct: 107 VSERLKKLTDLSTWKESVSGKGESSPRVPNDTDERRQINRRVEITLTPSK 156 >gi|167722111|ref|ZP_02405347.1| hypothetical protein BpseD_24069 [Burkholderia pseudomallei DM98] Length = 351 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 3/175 (1%) Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 QR ++ + Q +++ RD + + + Y L S + Sbjct: 179 SQRGPVSVALSPHWQPGPRSRSAPFRDFPAWVTAAVLSLIALGLFGCFKYALSTRSADVQ 238 Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 + R+ A L+ L+A I G L + S + R MF ++ Sbjct: 239 QRIAAIARMAPPAAPAELRLATLLAGEIAAGTL--SVEENARRSSVTFRGDAMFAPGAAG 296 Query: 244 PLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQ 297 P +++KI +A +++RG+TD P ++ N LS +RA Q Sbjct: 297 VNPAMGPLIRKIAAEIAKVPGKVTVRGYTDNQPIKSRQFASNEALSEERATQVMQ 351 >gi|54294009|ref|YP_126424.1| hypothetical protein lpl1070 [Legionella pneumophila str. Lens] gi|53753841|emb|CAH15307.1| hypothetical protein lpl1070 [Legionella pneumophila str. Lens] Length = 234 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 51/216 (23%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 TD+ I L ++ A K+ + + KI + + V V Sbjct: 13 ASFTDMLVGIIFIFIILLMIVANNFQSATKKVTEINESRDKILKEIEQSLKQEGVS-VTI 71 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL------------------ 259 + + + + + +F E + L K+ VL Sbjct: 72 DIEQGVLRL-----PESILFGVDQYQVNEEGKIALSKLASVLEKYLPCMAVTEEKFKSQC 126 Query: 260 -------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS---------- 302 + + I GHTD++ + NW LS RA S + L+ + Sbjct: 127 ESLNLTSRDGLDAVFIEGHTDST---GSSEHNWYLSARRAISVFNELIDAKPLLNVGLKN 183 Query: 303 --GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 G+ I +SG+ R ++ S NRRI++ Sbjct: 184 INGIP---ILNVSGYEARRPIDPNN--LSVNRRIEL 214 >gi|154493612|ref|ZP_02032932.1| hypothetical protein PARMER_02952 [Parabacteroides merdae ATCC 43184] gi|154086822|gb|EDN85867.1| hypothetical protein PARMER_02952 [Parabacteroides merdae ATCC 43184] Length = 662 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 88/287 (30%), Gaps = 30/287 (10%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + ++ YF G M D S+ ++ I + D I Sbjct: 345 PYVRDSVTLYFASDGHPGMGG----LDIFKATLDSTGKWNVENMKAPINSSGDDFGITFA 400 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 K+ N +T E + D + Sbjct: 401 GNKESGFFSSNRNDARGYDHLYSFELPVITIFIE---GIVSDVDENPIEDATVRIVGRDG 457 Query: 179 SKEKILAMKRKKRLQDLAKKI----SSTLSGLVADNIVKGVLFETTRTGILISIIDQR-- 232 EK+LA K K +L + I ++ G + N E ++ Sbjct: 458 LNEKVLAKKDGKYRVELERDIRYVMMASARGYLNQNFELKTGPEEKNETYIVDFFLSPIS 517 Query: 233 -----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 +D + PE+ L ++ ++L + V I + HTD + + N R Sbjct: 518 KPVVIENIFYDFDKATLRPESKKALDEMIKILNDNPNVTIELGAHTDR---KGSEQYNER 574 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ RA S L+ G+++DR+ G+ K + N+R Sbjct: 575 LAQRRAQSVVDYLIAGGIAQDRLEA-KGYGESVPK-------AINKR 613 >gi|222055877|ref|YP_002538239.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221565166|gb|ACM21138.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 530 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 28/210 (13%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV- 215 K ++ + + + P +E + + + K+I + L+ + ++ +GV Sbjct: 325 EPKVQPVQPKVQPKVQPVVQPKVQEPKITKLETEITVEPKKEIPANLNP-IEESSAEGVS 383 Query: 216 -LFETTRTGILISIIDQRNTP----------------MFDKSSSIPLPETIVVLQKIGEV 258 L+ G + I + P MF+ + E L ++ E Sbjct: 384 PLYGIETRGDSLEISTAKAAPIATKMLVYRKFRFADIMFEFGQADLSNEVKKSLSEVAEQ 443 Query: 259 LAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGF 315 + I GHTD+ + N LS+ RA + L+ K G+ ++ I G Sbjct: 444 ARADKHWTYMRIDGHTDS--IGSTGY-NMDLSVKRAIAIASYLIIKEGIDPSKVF-IKGL 499 Query: 316 AHHRLK--IASDPMNSANRRIDILVEDRQG 343 +L ++ NRR +IL +G Sbjct: 500 GKSKLIGDNSTTEGRRLNRRFEILFLVPKG 529 >gi|26991353|ref|NP_746778.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|24986416|gb|AAN70242.1|AE016663_10 OmpA family protein [Pseudomonas putida KT2440] Length = 172 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 D +F ++ ++++IG+ L + + + GH D+ A N +LS Sbjct: 62 DLSGKVLFGSDLDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADS---SGKAAYNQQLS 118 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA S + L+ G+ I G + + NRR+ I+V Sbjct: 119 ERRAQSVTKALVGIGMQAQNIQS-RGLGSSQPVADNRTSAGRTENRRVSIVV 169 >gi|304393653|ref|ZP_07375581.1| OmpA/MotB [Ahrensia sp. R2A130] gi|303294660|gb|EFL89032.1| OmpA/MotB [Ahrensia sp. R2A130] Length = 1102 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 17/282 (6%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +PF ++ +GI P + + + + + + + R+ Sbjct: 820 SPFTWMIVETEQGITLSGFAPSSDVAVDLAAAASSQLKATVENNQRVAGGAPSGFGRVAR 879 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN---------KEENYFLPPLSK 180 + S + R +GK ++ E + N P+ Sbjct: 880 ILIDAVGRVDSASASLTGERVVLEGKAGSETEVSEIGKRVSDALPDGYRLANRLSYPIPA 939 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDK 239 I K ++ ++ + E + + I + +FD Sbjct: 940 PAIAPKAEPKPVEAPVSMKPENPIAAPKEDTPEPASEEVSAACPVDFQQILRGKKILFDN 999 Query: 240 SSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + + + +L + + + S + I GHTDA N LS RA + Sbjct: 1000 NRAFIKASSYPLLDSLVDGFSKCSDARVMISGHTDAV---GRDAYNLSLSQSRAQAVLDY 1056 Query: 299 LMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + G+ D +GF + A+D +ANRRI I V Sbjct: 1057 IAGKGIDVDAFEA-AGFGETKPIADNATDTGRAANRRIVIEV 1097 >gi|126664143|ref|ZP_01735136.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] gi|126623857|gb|EAZ94552.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] Length = 621 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 99/279 (35%), Gaps = 17/279 (6%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F M +KG + N E + +K D + + TK ++ Sbjct: 354 FGGLDVFKMDLNKG-TEAINVGEPVNTSKDDFAFTYNTTKKVGFFSSNRDGNDDIFKADP 412 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + N + + D ++T +S L A Sbjct: 413 ICKVQALVRVKDAKTGNVIEGATVMLVDEKQTTITNQSTASNGETLSGVLCNTAYSAQVS 472 Query: 189 KKRLQDLAKKISSTL-SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 K+ + +++ +V + ++ ++ T +++ F+ S + Sbjct: 473 KQGYESGVFEVAKAENDQVVVEALLNPIMPIITEKEVILQ------PIYFEYDKSNITAD 526 Query: 248 TIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L K+ V+ + +I HTD+ R + N +LS RA + Q L+ G+++ Sbjct: 527 GAAELNKLIIVMNENPNMIIFAKSHTDS---RGSDKYNMKLSDRRAKATVQYLLSKGIAK 583 Query: 307 DRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDR 341 +RIS GF K+A ++ ++ NRR + L+ + Sbjct: 584 ERISG-QGFGESEPKVACKSCTEEEHAQNRRSEFLIVKK 621 >gi|332995422|gb|AEF05477.1| OmpA/MotB [Alteromonas sp. SN2] Length = 393 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD SS+ + + E + T I GHT A P N LS DRA Sbjct: 279 RVLFDNESSVVKAPRDPEISEFAEFMKQYTNTTAVIEGHTSA-PGSEAY--NMDLSEDRA 335 Query: 293 YSAYQVLMK-SGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340 S +V++ + R+ + G+ RL + + NRRI + V+D Sbjct: 336 ASFKEVMVDMYDIDASRLETV-GYGETRLLDTAKNAEAHRVNRRISVTVKD 385 >gi|313828793|gb|EFS66507.1| OmpA family protein [Propionibacterium acnes HL063PA2] Length = 115 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWR 286 ID + +FD S + P ++ + + L + I + G+TD+ A N Sbjct: 3 IDLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS---SGSASHNLD 59 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRRIDILVED 340 LS RA S +VL I+ ++ G ++D NRR+ I V++ Sbjct: 60 LSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNRRVTITVKE 114 >gi|262369124|ref|ZP_06062453.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316802|gb|EEY97840.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 216 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 14/149 (9%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + KK+ ++G GV G + I+ FD + S P Sbjct: 76 LDNKEKKLRQQMAGT-------GVEVNRNPDGSVGLIM--PGNITFDTNKSNIKPNFYST 126 Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI- 309 L K+ + L + I + G+TD++ N LS RA S L GVS RI Sbjct: 127 LNKVAQTLTEDNKSGILVTGYTDST---GNDSINIPLSQARAQSVASYLASQGVSTTRIN 183 Query: 310 SKISGFAHHRLKIASDPMNSANRRIDILV 338 ++ G A+ A+ NRR++I + Sbjct: 184 AQGQGSANPIASNATAEGREQNRRVEISI 212 >gi|260494689|ref|ZP_05814819.1| peptidoglycan-associated lipoprotein [Fusobacterium sp. 3_1_33] gi|260197851|gb|EEW95368.1| peptidoglycan-associated lipoprotein [Fusobacterium sp. 3_1_33] Length = 166 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E + I + D+ FD S+ P+ +L + + + + ++I GHTD + Sbjct: 21 EEPPEEMTIVLDDRALN--FDFDKSVVKPQYNEMLTNLKDFIEKNDYEVTIVGHTD---Y 75 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 N LS RA + L++ G+ RI I A+ + NRR++ Sbjct: 76 IASNAYNMGLSKRRAEAVKTKLIELGLDPSRIVGIVPRGEEEPIADNATTEGRAKNRRVE 135 Query: 336 ILVEDR 341 + R Sbjct: 136 FKLVKR 141 >gi|78224724|ref|YP_386471.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78195979|gb|ABB33746.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 193 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARDN 284 ++ + FD S + +L K E +L + I GH D R N Sbjct: 80 TVTATLDRIFFDFDSFVLSQAARDILSKNAEYLLKKQPNARVLIEGHCDE---RGSDEYN 136 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 L RA +A L+ GV+ +R+S IS + + + NRR + L+ Sbjct: 137 LALGEKRAKAARDYLVTLGVAANRLSIIS-YGEEKPLDPGHTEEAWAKNRRAEFLI 191 >gi|289641193|ref|ZP_06473360.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata] gi|289508955|gb|EFD29887.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata] Length = 226 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 18/159 (11%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRT---GILISIIDQRNTPMFDKSSSIPLP 246 + + + ++I+ + D V T R G++++I +F S+ Sbjct: 71 QAIIESIREINPAAAIRPIDVERSVVTLRTERRDGSGVVVTISSD---VLFAFDSANLTK 127 Query: 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L I L T I++ G+TD++ N LS RA + +L + Sbjct: 128 AAREQLDGIAAQLGRVTGTITVNGYTDST---GTPAYNVILSQQRANAVANLL-RPKAPP 183 Query: 307 DRISKISGFAHHRLKIASD--------PMNSANRRIDIL 337 + +G + NRR+ I+ Sbjct: 184 GVLVSATGHGAANPVAPNTNSDGSDNSAGRGQNRRVSII 222 >gi|254506333|ref|ZP_05118476.1| outer membrane protein [Vibrio parahaemolyticus 16] gi|219550813|gb|EED27795.1| outer membrane protein [Vibrio parahaemolyticus 16] Length = 225 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 14/212 (6%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 C+ + +++ G+ S I + + + +++ + Sbjct: 18 SGCQATQRQNATTGESETNSATSGAIIGAIAGAAIGVATGDDAKDRRKRALIGAAGGAAV 77 Query: 201 STLSGLVADNIVKGVLFETTRTGILIS-------IIDQRNTPMFDKSSSIPLPETIVVLQ 253 G D + E +G+ + ++ N F SS L+ Sbjct: 78 GGGVGYYFDQQEAALRQELLNSGVQVERVGENQLLLRLENGIGFSSSSYQLDSSIHNTLR 137 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + +L + + I GHTD++ N LS RA S L+ GV+ R Sbjct: 138 GVARILVEYPDTSLVIEGHTDST---GSDTTNQILSERRAESVRSYLVSQGVAAGRAIA- 193 Query: 313 SGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G ++ + NRR++I + + Sbjct: 194 RGNGERYPLCTNSTAEGRACNRRVEIQILPLK 225 >gi|209964175|ref|YP_002297090.1| OmpA family protein (probable proton motor MotY) [Rhodospirillum centenum SW] gi|209957641|gb|ACI98277.1| OmpA family protein (probable proton motor MotY) [Rhodospirillum centenum SW] Length = 356 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T FD S + VL+ + + + + + + GH D A N RLS+ RA Sbjct: 252 TVFFDWDRSDLTADARQVLRSVAGDARSGNIFAVQVTGHADT---SGPADYNQRLSIRRA 308 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 + L+ G+ D+I I G + + +NRR I+ Sbjct: 309 EAVRDFLITQGIPADQI-AIEGRGETDPLVPTADGVREPSNRRSVII 354 >gi|298208372|ref|YP_003716551.1| putative outer membrane protein [Croceibacter atlanticus HTCC2559] gi|83848293|gb|EAP86163.1| putative outer membrane protein [Croceibacter atlanticus HTCC2559] Length = 332 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + P ++ L +SI GHTD F DN + RA Sbjct: 231 FAQQNFKPDATLKSYALELKSYLQKHPNKRVSIVGHTD---FVGEEEDNLWIGEQRAKLV 287 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L+ G+ ++++ S G + + +D + NRRI+I V Sbjct: 288 MKYLISIGIDANKMTASSKGESDPKFPNTTDANRAKNRRIEIKV 331 >gi|254787334|ref|YP_003074763.1| peptidoglycan-associated lipoprotein [Teredinibacter turnerae T7901] gi|237684812|gb|ACR12076.1| peptidoglycan-associated lipoprotein [Teredinibacter turnerae T7901] Length = 166 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD SI + L EVL + + + + GH D R N L RA + Sbjct: 67 FDFDQSILRADARSALMVYAEVLKAAPKSVRLEGHADE---RGTREYNMALGERRANAVR 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 L+ GV I +S + R +S+ + NRR++I++ Sbjct: 124 DFLILQGVDSSLIETVS-YGEERPAQMGSSESSWAMNRRVEIVL 166 >gi|15641766|ref|NP_231398.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585850|ref|ZP_01675644.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80] gi|121727708|ref|ZP_01680803.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52] gi|147673520|ref|YP_001217304.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395] gi|153819630|ref|ZP_01972297.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457] gi|153821127|ref|ZP_01973794.1| hypothetical protein A5E_2064 [Vibrio cholerae B33] gi|227081908|ref|YP_002810459.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2] gi|229508134|ref|ZP_04397639.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286] gi|229511627|ref|ZP_04401106.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33] gi|229518766|ref|ZP_04408209.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9] gi|229607695|ref|YP_002878343.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236] gi|255744822|ref|ZP_05418772.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101] gi|262161895|ref|ZP_06030913.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE 91/1] gi|262169763|ref|ZP_06037454.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27] gi|298498167|ref|ZP_07007974.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656285|gb|AAF94912.1| chemotaxis protein MotB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549988|gb|EAX60006.1| hypothetical protein VC274080_1816 [Vibrio cholerae 2740-80] gi|121630005|gb|EAX62413.1| hypothetical protein VCV52_1737 [Vibrio cholerae V52] gi|126509834|gb|EAZ72428.1| hypothetical protein A5C_1796 [Vibrio cholerae NCTC 8457] gi|126521323|gb|EAZ78546.1| hypothetical protein A5E_2064 [Vibrio cholerae B33] gi|146315403|gb|ABQ19942.1| hypothetical protein VC0395_A1361 [Vibrio cholerae O395] gi|227009796|gb|ACP06008.1| chemotaxis protein MotB-related protein [Vibrio cholerae M66-2] gi|227013663|gb|ACP09873.1| chemotaxis protein MotB-related protein [Vibrio cholerae O395] gi|229343455|gb|EEO08430.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC9] gi|229351592|gb|EEO16533.1| chemotaxis protein MotB-related protein [Vibrio cholerae B33] gi|229355639|gb|EEO20560.1| chemotaxis protein MotB-related protein [Vibrio cholerae BX 330286] gi|229370350|gb|ACQ60773.1| chemotaxis protein MotB-related protein [Vibrio cholerae MJ-1236] gi|255737293|gb|EET92688.1| chemotaxis protein MotB-related protein [Vibrio cholera CIRS 101] gi|262021997|gb|EEY40707.1| chemotaxis protein MotB-related protein [Vibrio cholerae RC27] gi|262028627|gb|EEY47282.1| chemotaxis protein MotB-related protein [Vibrio cholerae INDRE 91/1] gi|297542500|gb|EFH78550.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 244 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 33/187 (17%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234 L ++ ++ D+ I +A NI+ V E + +++ I D +T Sbjct: 40 ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99 Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283 F SSIP T ++ IG VL + + I I GHTD+ + Sbjct: 100 LTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKG 159 Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329 NW LS DRA S + V G E+ ++ +SG+A R L A+ S Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLHEANQQEKS 219 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 220 QNRRIDI 226 >gi|332878199|ref|ZP_08445928.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683937|gb|EGJ56805.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 229 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 17/156 (10%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 ++ AKKI + G + GI+++ D+ + F+ + ++ Sbjct: 75 NQMDKQAKKIEEEIPGA---------EVKRVDDGIVVT-FDENSGVYFETAKHNINEKSK 124 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L K+ VL E + + G+TD+ N LS RA S +G++ R Sbjct: 125 ETLNKLIAVLKEYPETNVVVAGYTDSV---GKDEYNMGLSKRRAQSVTNYFTSNGLAASR 181 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + F + + NRR+++++ + Sbjct: 182 FT-TKWFGEQNPVADNGTPEGRAKNRRVNVVIVPNE 216 >gi|303237216|ref|ZP_07323786.1| OmpA family protein [Prevotella disiens FB035-09AN] gi|302482603|gb|EFL45628.1| OmpA family protein [Prevotella disiens FB035-09AN] Length = 704 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 34/145 (23%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 I + + +D + PE+ L + ++L + V I + HTD + A N Sbjct: 529 IRVPVMIDNIFYDFDKATLRPESEAALDNLVKLLNENPNVTIELSAHTD---YLGRAEYN 585 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR------------------------- 319 L+ RA + L+K GVS DR+S + G+ + Sbjct: 586 KNLAQRRADAVVAYLIKKGVSADRLSPV-GYGEGKPKTIRKKVAEKYPWLKEGQVLTEEF 644 Query: 320 ----LKIASDPMNSANRRIDILVED 340 K + N NRR + +V Sbjct: 645 IKSLPKDKQEIANQMNRRTEFVVLR 669 >gi|237744908|ref|ZP_04575389.1| outer membrane protein [Fusobacterium sp. 7_1] gi|229432137|gb|EEO42349.1| outer membrane protein [Fusobacterium sp. 7_1] Length = 166 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E + I + D+ FD S+ P+ +L + + + + ++I GHTD + Sbjct: 21 EEPPEEMTIVLDDRALN--FDFDKSVVKPQYNEMLTNLKDFIEKNDYEVTIVGHTD---Y 75 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 N LS RA + L++ G+ RI I A+ + NRR++ Sbjct: 76 IASNAYNMGLSKRRAEAVKAKLIELGLDPSRIVGIVPRGEEEPIADNATTEGRAKNRRVE 135 Query: 336 ILVEDR 341 + R Sbjct: 136 FKLVKR 141 >gi|319792464|ref|YP_004154104.1| ompa/motb domain protein [Variovorax paradoxus EPS] gi|315594927|gb|ADU35993.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 216 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ PE L + E + + I GHTD+ A N RLS+ RA + L Sbjct: 114 KSVLKPEGRAKLTDLVEKIRGVNLEVIIAVGHTDS--IGTDAY-NQRLSVRRAEAVKAFL 170 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + G+ +R+ G + + + NRR++I V Sbjct: 171 VSKGIERNRVY-TEGKGEKQPVADNRTKEGRAKNRRVEIEV 210 >gi|225011410|ref|ZP_03701848.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225003913|gb|EEG41885.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 370 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 83/222 (37%), Gaps = 25/222 (11%) Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE--NYFLPPLSKEKILAMKR 188 + + + + + K + K + + + ++ + ++E L ++ ++ + Sbjct: 159 VREIPIQKLAANEKTTAEEIKGKYRLITRQVEVSPAQTRQEVIPSKSQTLERQILVTDET 218 Query: 189 KKRL---QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 K + + + I L + V G L+ I + S+ Sbjct: 219 TKEITVPAESTEIIKKILVKKGGTTAWREVPCTIPERGELLPIH-------YALGSAALT 271 Query: 246 PETIVVLQK--IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 ++ ++ + + + A ++ I HTD+ R N LS RA S + L+ G Sbjct: 272 SKSTKIIDEYILARMKADKNILVEIGSHTDS---RGTDSLNMSLSERRAKSVVEYLISKG 328 Query: 304 VSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 +++ R+ G+ +L S+ +++ NRR + V Sbjct: 329 INKQRLIA-EGYGEDKLLNDCENGVDCSESLHANNRRTEFKV 369 >gi|315110066|gb|EFT82042.1| OmpA family protein [Propionibacterium acnes HL030PA2] Length = 120 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWR 286 ID + +FD S + P ++ + + L + I + G+TD+ A N Sbjct: 8 IDLDASVLFDLDSDVVKPAGRQIIDRTAKQLVARKVSGKIEVTGYTDS---SGSASHNLD 64 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRRIDILVED 340 LS RA S +VL I+ ++ G ++D NRR+ I V++ Sbjct: 65 LSRRRAASVAKVL--GSQLSKGITLVTAGKGEADPVTSNDSEAGRRLNRRVTITVKE 119 >gi|152995560|ref|YP_001340395.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150836484|gb|ABR70460.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 296 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 8/112 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289 R +F + L + ++ V I I GHTD RDN LS Sbjct: 183 RTAALFPTNGVNLTDRIKARLDLVALYVSSDPSVEYIYIDGHTD---VIGSRRDNRELSK 239 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 RA L++ GV +I ++ NRR+ I +E Sbjct: 240 VRAEKVTSYLLEKGVPAGKIIS-RYHGERYPSTTNNTAQGRERNRRVTIRLE 290 >gi|146306425|ref|YP_001186890.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145574626|gb|ABP84158.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 315 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 8/101 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L I + + I GH D N LS RA + Sbjct: 183 FPGGGIELDAMAKAKLDIILDFVKADPSINSFQIDGHADN---SGNRLTNRDLSRRRALA 239 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + L+ GV ++I+ + + ++ + NRR Sbjct: 240 VQEYLVAGGVPAEQIT-VRFHGERYPLVPNNNEANRAKNRR 279 >gi|89889717|ref|ZP_01201228.1| hypothetical protein BBFL7_01535 [Flavobacteria bacterium BBFL7] gi|89517990|gb|EAS20646.1| hypothetical protein BBFL7_01535 [Flavobacteria bacterium BBFL7] Length = 352 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHT----DASP- 276 G +I + +F K S L E+ +L ++ E+L A I GH A P Sbjct: 231 GQVIRL----ENILFYKGRSTILEESQPLLDRVAEILIAREDIHFEIHGHVCCINPAYPD 286 Query: 277 --FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 R+ + N LS RA + Y++L GV R+ + G+ R D ++ RR+ Sbjct: 287 AYNRDTKKSN--LSHARALAIYKILRSRGVKHTRM-RFKGYGRTRPLGGIDKLD---RRV 340 Query: 335 DILV 338 ++ + Sbjct: 341 ELYI 344 >gi|325577896|ref|ZP_08148129.1| outer membrane protein P5 [Haemophilus parainfluenzae ATCC 33392] gi|325160326|gb|EGC72453.1| outer membrane protein P5 [Haemophilus parainfluenzae ATCC 33392] Length = 366 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 14/113 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I +A +++ G+TD N +LS RA S Sbjct: 253 FAFGKANLKPQAKATLDGIYGEIAQINNANVAVAGYTDRI---GKDAPNLKLSQRRADSV 309 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILV 338 L+ GV IS + G A+ D + +RR++I V Sbjct: 310 ANYLVAKGVPAQNISAVGHGKANPVTGSTCDAVKGRKALIACLAPDRRVEIAV 362 >gi|323700864|ref|ZP_08112776.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323460796|gb|EGB16661.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 392 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD + P ++ VL +GE L I + GHTDA A N LS RA Sbjct: 283 FDFDKATIQPASLAVLDALGETLNSPEFKGRSIIVGGHTDA---SGGAEYNLTLSKQRAE 339 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ ++ D I + GF R NRR++I Sbjct: 340 AVKSYLVDKWHINPDLIEAV-GFGKSRPLTEGTTAADQQRNRRVEI 384 >gi|163738854|ref|ZP_02146267.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] gi|163741898|ref|ZP_02149288.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10] gi|161385071|gb|EDQ09450.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10] gi|161387659|gb|EDQ12015.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] Length = 636 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L +I ++LA + I+GHTD+ N LS RA S Sbjct: 499 FEPGSATVAAGSRDTLDQIADILARCDGVRLEIQGHTDSQ---GREEMNQTLSQSRAQSV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L + + G+ ++D + NRRI+ Sbjct: 556 LNELRGRRLVTSSFTA-KGYGESTPIASNDTEDGREANRRIE 596 >gi|126729097|ref|ZP_01744911.1| OmpA family protein [Sagittula stellata E-37] gi|126710087|gb|EBA09139.1| OmpA family protein [Sagittula stellata E-37] Length = 227 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ I L++ + + GH D N L L RA + Sbjct: 83 FAFNSAQLDQGAIDTLREQARWIRQFPEVRFRVYGHADKV---GNQAYNKSLGLRRANAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+S R+ + F + I ++ NRR Sbjct: 140 VNYLVSQGISRSRLEAVVSFGETQPLIVTEGRERRNRR 177 >gi|315223627|ref|ZP_07865481.1| immunogenic peptidoglycan-associated lipoprotein PG4 [Capnocytophaga ochracea F0287] gi|314946408|gb|EFS98403.1| immunogenic peptidoglycan-associated lipoprotein PG4 [Capnocytophaga ochracea F0287] Length = 660 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 SL E+ + + + N ++ + + +E + ++ L L + L Sbjct: 468 SLKLIEEQNSNKEGTFSFLYTSNCKDEQLIIKIIREGFSSDEQNITLTGLKDAYAEVLLS 527 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 + + + + ++ + I + FD + P+ L KI +V+ Sbjct: 528 PIVEKKPIKIGDDLSKE-LKI------DNIYFDYDKANIRPDAAEQLAKIVKVMEEYPTM 580 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323 I +R HTD+ R N LS RA S + L+ G+ +DRI+ G+ +L Sbjct: 581 KIDVRLHTDS---RGSDSYNLALSQRRAKSTIKWLIAHGIHKDRITG-KGYGETQLVNGC 636 Query: 324 ------SDPMNSANRRIDILV 338 ++ + ANRR + ++ Sbjct: 637 SNGVPCTEEQHQANRRSEFII 657 >gi|255037115|ref|YP_003087736.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949871|gb|ACT94571.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 484 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD ++ PE +L+ + ++ + + + GHTD R R N LS R + Sbjct: 381 FDTDKNVLKPEFQELLKNVAALMNKNGCRLQLAGHTDR---RASDRYNIALSKRRVEAVK 437 Query: 297 QVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340 L+ ++G+ + + F + A+ P NRR+++ + Sbjct: 438 NFLINEAGLQDPSKVIVDYFGSFKPIADSATRPGLQKNRRVELKLLP 484 >gi|83943938|ref|ZP_00956395.1| OmpA family protein [Sulfitobacter sp. EE-36] gi|83845185|gb|EAP83065.1| OmpA family protein [Sulfitobacter sp. EE-36] Length = 234 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ VL++ + + GHTDA N L L RA S Sbjct: 90 FAFNSAQLDGAAQAVLRRQAGWIRQFPEVRFRVYGHTDAV---GSNSYNKALGLRRAQSV 146 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + F + I + ANRR Sbjct: 147 VAFLSTQGISRSRLEAVVSFGETQPLIVTQGRERANRR 184 >gi|56708795|ref|YP_164836.1| OmpA family protein [Ruegeria pomeroyi DSS-3] gi|56680480|gb|AAV97145.1| OmpA family protein [Ruegeria pomeroyi DSS-3] Length = 180 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E L++ + I GHTD+ R N RLS++RA S Sbjct: 82 FFATDSYRISSEGQARLRQFFQ--ETGANGYIITGHTDS---RASDAYNLRLSVNRANSV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 +V +G RI + G+ ++ + + NRR++I+ Sbjct: 137 ARVGRATG---ARIVDVRGYGERDPRVPNTSAANMAQNRRVEII 177 >gi|254463240|ref|ZP_05076656.1| OmpA family domain protein [Rhodobacterales bacterium HTCC2083] gi|206679829|gb|EDZ44316.1| OmpA family domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 316 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARD 283 + + D MF SS + LQ + + L ++ST +++ GHTDA Sbjct: 203 RVILSDL----MFQTGSSNLGEGSFKSLQNLADYLRSNSTRKVALVGHTDAE---GSLEG 255 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVEDR 341 N LS RA S + L+++ GV D++S GF S +ANRR++ ++ Sbjct: 256 NIALSKRRASSVRKRLIEAYGVPTDQLSADGVGFLSPVASNLSAAGRTANRRVEAVLIST 315 Query: 342 Q 342 Q Sbjct: 316 Q 316 >gi|172063966|ref|YP_001811617.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171996483|gb|ACB67401.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 170 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 44 ALKSAGFQETGQGFE---FGSSGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D R LS RA L+ G+ R++ I G + + Sbjct: 101 GYSDDEGTVAYDR---ELSRRRAEVVAIELVDVGLDGKRVAVIGKGKSDPVGDNRTPTGR 157 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 158 AQNRRAAIVVSPR 170 >gi|322418609|ref|YP_004197832.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320124996|gb|ADW12556.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 426 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P L+ +G+ L + I GHTD++ N RLS RA + Sbjct: 314 FDTDKWNIKPRYHAELKTVGDFLNQFPDAYGEISGHTDST--HTDDY-NQRLSERRAKAV 370 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQG 343 ++K+ + R++ G+ R + + NRRI+ LV ++G Sbjct: 371 RDYIVKNFKIDPKRLTG-KGYGEKRPMATNKTAVGRAKNRRIEANLVCAKKG 421 >gi|163745388|ref|ZP_02152748.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45] gi|161382206|gb|EDQ06615.1| OmpA family domain protein [Oceanibulbus indolifex HEL-45] Length = 317 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 N F+ +S L+++ E+L +++ GHTDA N LS R Sbjct: 208 NRLEFETGTSALGAGPFATLERLAELLKADPGLRVALVGHTDAV---GSLEANTVLSRKR 264 Query: 292 AYSAYQVLMKSG-VSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVED 340 A + + L++S V DR+ ++ +G+ R ++ NRR++++V Sbjct: 265 AEAVRERLVQSYDVDPDRLEARGAGYLAPRGSNLTEAGREENRRVEVVVLS 315 >gi|331004883|ref|ZP_08328300.1| Outer membrane protein [gamma proteobacterium IMCC1989] gi|330421337|gb|EGG95586.1| Outer membrane protein [gamma proteobacterium IMCC1989] Length = 197 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S+ L A + V IS+ GH D+ R N LS RA + Sbjct: 90 FATNSAELKDAGKAALNTFA-TRAKALNVSGISVVGHADS---RGAESYNQALSEKRANT 145 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L G+ + + G ++D + NRR+DI V Sbjct: 146 VKSYLESQGIVGS-LIRAEGQGETSPVASNDTAEGRAQNRRVDITV 190 >gi|261251125|ref|ZP_05943699.1| protein F-related protein [Vibrio orientalis CIP 102891] gi|260937998|gb|EEX93986.1| protein F-related protein [Vibrio orientalis CIP 102891] Length = 205 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282 +++ + D F+ SS P++ L +G LA I I GH D++ Sbjct: 90 VMVKLKDTIK---FNTGSSNVSPDSQYWLDMMGSYLATQPGIDIVIDGHADST-GAPTFN 145 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 D LS+ RA + + L+++ V+ D I G+ + ++ NRR+++L Sbjct: 146 DG--LSMKRASAVKRQLVRNNVAMDSIF-TRGYGEYVPACSNKTKAGKACNRRVEVL 199 >gi|325106387|ref|YP_004276041.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324975235|gb|ADY54219.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 666 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 + P + L + +++ + ++ I + HTD + A N LS RA S L Sbjct: 562 KAELTPMSAQALDILADIMMDNPKITIELSSHTDG--IGSDAY-NLDLSQRRAQSCVDYL 618 Query: 300 MKSGVSEDRISKISGFAHHRLKIAS------DPM-NSANRRIDILVEDR 341 + G+S +I + G+ + +P + NRR + V + Sbjct: 619 IAKGISAGKI-QAKGYGKSMPIAPNTINGKDNPEGRALNRRTEFKVIKK 666 >gi|298565977|dbj|BAJ09608.1| hypothetical protein [Pasteurella pneumotropica] Length = 289 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 20/154 (12%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP-MF---DKSSSIPLPETIVVLQKI 255 +S L +N + G + ++ + +F + LP +++ Sbjct: 138 EQEVSKLPKENQTLSRVPSPANCGAAVLAVESLDASALFGFNKSGYNDILPNGKEKIREF 197 Query: 256 GEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + I + GHTD P + A N LS RA + L K+GVS I + Sbjct: 198 ADKVKEMPSISKILVSGHTD--PIGSTAY-NQTLSQKRANTVKLALQKAGVSTP-IEAV- 252 Query: 314 GFAHHRLKIAS---------DPMNSANRRIDILV 338 G+ + + + N NRR++I V Sbjct: 253 GYGKAEPVVTTCDTYKDAQRNQCNQPNRRVEIAV 286 >gi|225012050|ref|ZP_03702487.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225003605|gb|EEG41578.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 299 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 13/113 (11%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 LI +I +F+ I E ++ L+++ +L I + GHTD + Sbjct: 191 LIQLI------LFETDQDILTEEALISLEEVYSILIQYPNLNIIVEGHTDDT---GGVNY 241 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRI 334 N LS + + L+ G+S +I + + R + NRR+ Sbjct: 242 NQELSEKIVATVLRFLINRGISSSKIKSAA-YGETRPLRTNSTSEGRRYNRRV 293 >gi|213163752|ref|ZP_03349462.1| putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 196 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + +++ G+TD++ ++ N RLS RA S L+ GV RI + SG Sbjct: 142 PKTAVNVVGYTDSTGSHDL---NMRLSQQRADSVASSLITQGVDASRI-RTSGMGPANP 196 >gi|126733592|ref|ZP_01749339.1| peptidoglycan-associated lipoprotein, putative [Roseobacter sp. CCS2] gi|126716458|gb|EBA13322.1| peptidoglycan-associated lipoprotein, putative [Roseobacter sp. CCS2] Length = 173 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F +S PE +L + +L ++ I GH D N L R Sbjct: 62 DRVLFAVDTSTITPEGQTILDGQAQWLLTNADYRAVIEGHADEQ---GTREYNLALGQRR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A + + L+ GV R+ +++ F R + + + NRR Sbjct: 119 ANAVREYLVSRGVPSTRL-QVTSFGKERPIAICSEESCYAQNRR 161 >gi|238797533|ref|ZP_04641031.1| OmpA family protein [Yersinia mollaretii ATCC 43969] gi|238718674|gb|EEQ10492.1| OmpA family protein [Yersinia mollaretii ATCC 43969] Length = 168 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD P+ + +Q IG+ L + + GHTD++ N +LS R Sbjct: 61 NKVLFDSDVKKLNPDGVRTVQNIGKALTAVGITHLRVDGHTDST---GEDSYNQQLSYQR 117 Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 A + L G+ I + G + + NRR+ ++V Sbjct: 118 AAAVADTLALIGIPRANIDVRGRGKLDPVADNRTAKGRAENRRVSMIV 165 >gi|167625831|ref|YP_001676125.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355853|gb|ABZ78466.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 201 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q +F S P+ ++ I + I GH + N LS Sbjct: 73 QELKVLFANDSYYIDPQYYPQVEVIATFMRDYPNTQAVIEGHCSKT---GSHEHNQVLSQ 129 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 +RA + +L + G+ DR+S + G++ R + + NRR+ Sbjct: 130 NRANAVSSLLAERFGIDSDRLSAV-GYSFDRPVDPTHTRAAHKVNRRV 176 >gi|220921338|ref|YP_002496639.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945944|gb|ACL56336.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 222 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +SS P+ + V++ +G LA I GHTD + + N LS RA Sbjct: 111 FDYNSSKIGPKALPVVKSLGAALARPELKGNTFLIVGHTDG---KGKDQINQTLSERRAE 167 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + Q ++++ GV + + G+ +LK ++P+++ NRR+ Sbjct: 168 AVKQYIVQNYGVPASNLVSV-GYGKSQLKDTANPLSAVNRRVT 209 >gi|126733574|ref|ZP_01749321.1| OmpA family protein [Roseobacter sp. CCS2] gi|126716440|gb|EBA13304.1| OmpA family protein [Roseobacter sp. CCS2] Length = 216 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S++ + L + + + + GHTD N L L RA +A Sbjct: 77 FAFNSTVLDADARSTLMRQADWIRQFPEVRFKVYGHTD---LVGSQGYNRSLGLRRAQAA 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G++ +R+ + F + + +D NRR Sbjct: 134 VAFLASQGINRNRLEAVVSFGETQPLVVTDGRERRNRR 171 >gi|127511566|ref|YP_001092763.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126636861|gb|ABO22504.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 481 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 12/133 (9%) Query: 216 LFETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRG 270 G+ I Q + +F S LPE V+ + L + + G Sbjct: 350 RVVIDLEGLKDKIAQQGHVALDGLLFKFDSDQMLPEADEVITTLATYLKSHPKQHFYVVG 409 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS--DPM 327 HTD N LS RA + L G+++ ++S + G + + + Sbjct: 410 HTDDQ---GKQGYNKGLSEQRAKAVVATLTQSHGINKAQLSPM-GVGEYVPVANNLDEAG 465 Query: 328 NSANRRIDILVED 340 NRR+++++ Sbjct: 466 RQRNRRVELVLRS 478 >gi|330973095|gb|EGH73161.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 300 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARARARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 GV E +I+ + ++ + NRR+++ +E Sbjct: 235 VMDYFKAQGVPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281 >gi|298488736|ref|ZP_07006765.1| Outer membrane protein, OmpA family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156809|gb|EFH97900.1| Outer membrane protein, OmpA family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 301 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 G+ E +I+ + + ++ + NRR+++ +E Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLVPNTNEANRARNRRVNVHLER 281 >gi|148977050|ref|ZP_01813696.1| protein F-related protein [Vibrionales bacterium SWAT-3] gi|145963710|gb|EDK28971.1| protein F-related protein [Vibrionales bacterium SWAT-3] Length = 210 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P P L +G L+ + I I GHTD + R N LS RA Sbjct: 106 FKTGSAFPEPAYNQWLDTLGSYLSQRQDIDIVIEGHTDNT---GTDRINDPLSEQRAKEV 162 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L + VS I GF + AS + NRR+++++ Sbjct: 163 KARLESNYVSSRSIY-TRGFGEYVPACTNASPQGKACNRRVELML 206 >gi|260062002|ref|YP_003195082.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501] gi|88783564|gb|EAR14735.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501] Length = 375 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 + +F+ + L ++ + L + + + +RGHTD+ R N +LS R Sbjct: 261 SLLFEFDAHQLTDAGKEALHRVYDALRSDLSLFLELRGHTDS---RGAPAYNQQLSEQRC 317 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 + + L G+ RI + GF R +S+ NRR++ L+ Sbjct: 318 RAVARYLEGLGLDSVRI-RWIGFGAARPVAGNSSESGRRRNRRVEFLIRS 366 >gi|119944499|ref|YP_942179.1| OmpA domain-containing protein [Psychromonas ingrahamii 37] gi|119863103|gb|ABM02580.1| OmpA domain protein [Psychromonas ingrahamii 37] Length = 195 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 12/178 (6%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S + +K + K +LA + + + ++ + E T ++ Sbjct: 23 SSKSYNDSAAMEANKAAMEQAAMDKAAMELAAMERAAEENKIETDGLQ--VVELTEEELM 80 Query: 226 ISIIDQ---RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 + T FD +S+ PE +L + L ++ + ++I GHTD + Sbjct: 81 AQQYSDAILQKTIQFDFDTSMIKPEFTSILDAHAKFLVNNPSKKVTIEGHTDE---KGTP 137 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 N LS RA S L GV D+IS +S + + S+ + NRR +++ Sbjct: 138 GYNIALSERRAMSVSVYLENMGVLPDQISVVS-YGEEKPLNFGHSEASWADNRRAELV 194 >gi|120602698|ref|YP_967098.1| OmpA/MotB domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562927|gb|ABM28671.1| OmpA/MotB domain protein [Desulfovibrio vulgaris DP4] gi|311234162|gb|ADP87016.1| OmpA/MotB domain protein [Desulfovibrio vulgaris RCH1] Length = 344 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ +L + ++ + + + GHT N +LS RA S Sbjct: 243 FALNSAKLDASATSILTEAARIIKANPGKKLLVAGHTCNL---GTDAYNLKLSDARAKSV 299 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L+K GV R+ GF + K + + S NRR+++ Sbjct: 300 KDFLVKQGVEASRLD-TFGFGESQPKYDNGTEQGRSMNRRVEL 341 >gi|83648072|ref|YP_436507.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Hahella chejuensis KCTC 2396] gi|83636115|gb|ABC32082.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components [Hahella chejuensis KCTC 2396] Length = 513 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S E + + E L H + IRGHT R A N +LSLDRA + Sbjct: 404 FASGTSELTLEGKREVDLLMENLQHYPNFRVEIRGHT---GVRGDAEANKQLSLDRAEAV 460 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSAN-R--RIDILVEDRQ 342 Y+ + V +R + GF + + ++ + + N R R++I++ + Sbjct: 461 YRYIEVTYEVDPNRF-RFVGFGGEKPLPQLPNESLRAYNYRLPRVEIVLVSGE 512 >gi|227873541|ref|ZP_03991786.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840631|gb|EEJ51016.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 385 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 16/204 (7%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 S+ + G + + ++ + +L +I+ L+ Sbjct: 47 RSIFPNGRPGDKSAEQIIINGQATNKDEPAGEIGDSGAPENTVDPNNINELYLQIAQALN 106 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G D + G + + ++ F SS+ P+ L + +A Sbjct: 107 GAGIDGV-------EVSRGQDYTFVVFKDKAFFAGDSSVITPQGQETLSIFCDTIAPDAN 159 Query: 265 V---ISIRGHTD-ASPFRNIARDNWR-LSLDRAYSAYQVLMKSGV-SEDRISKISGFAHH 318 +++ GHT A P R N R LS+ RA + G+ S D++ I G+ Sbjct: 160 KLSQVNVMGHTAQADPERANNPRNDRILSVMRAAEVCLFIQGRGIISPDKLVSI-GYGQF 218 Query: 319 RLKIASDP--MNSANRRIDILVED 340 + + NRR++IL+ D Sbjct: 219 HPIADNATSEGRAKNRRVEILLID 242 >gi|89055277|ref|YP_510728.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88864826|gb|ABD55703.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 481 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S+ + + ++ + + + + GHTDA N LS +RA + Sbjct: 377 LFDFDSATLRRAGLQAVSELAAAIRSGQVSQVIVDGHTDA---AGSDAYNQTLSQERAVA 433 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 Q LM GV++ + F R + + NRR+++L+ Sbjct: 434 VAQALMVQGVAQG-LLTTRAFGESRPVADNGSEAGAQQNRRVEVLL 478 >gi|294139179|ref|YP_003555157.1| OmpA family protein [Shewanella violacea DSS12] gi|6141577|dbj|BAA85891.1| unnamed protein product [Shewanella violacea] gi|293325648|dbj|BAJ00379.1| OmpA family protein [Shewanella violacea DSS12] Length = 220 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++ TR+G I + N F P VL + V I+I G Sbjct: 92 LRSTGVSVTRSGDNIVLN-MPNEVTFGVDEVHLNPGAKNVLNSVALVAKEYDNTQINILG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 +TD+ N RLS RA L+ V R+ + G R ++ Sbjct: 151 YTDS---SGSESYNLRLSKVRAVEVADYLISQKVEYARV-RSEGIGEARPIASNSTAQGR 206 Query: 331 --NRRIDILV 338 NRR++I++ Sbjct: 207 TQNRRVEIIL 216 >gi|117919364|ref|YP_868556.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117611696|gb|ABK47150.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 485 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + + + GHTD + N LS RA + Sbjct: 378 LFDYDSERMLPESKPVLEVLASYLKQNPKLSFYVVGHTDD---KGERSYNQSLSERRAAA 434 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + +D NRR+++++ + Sbjct: 435 VIKQLSDGFKIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484 >gi|289672144|ref|ZP_06493034.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5] Length = 831 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 24/268 (8%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++N P ++ ID + VD + S + + + +Q++ Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + K + +++ + + ++++L + L+ Sbjct: 626 KARIPDYWYPAIYKQVQRDTNVSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683 Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261 + + + + I I + +F + L I L + Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH D A+ N ++S RA + L+ G+ + + + G ++ Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSRQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799 Query: 320 LKIASDPMNSA---------NRRIDILV 338 + D NRR++I V Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827 >gi|149277383|ref|ZP_01883524.1| outer membrane protein 3a [Pedobacter sp. BAL39] gi|149231616|gb|EDM36994.1| outer membrane protein 3a [Pedobacter sp. BAL39] Length = 657 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +++ + + L + +L + + I + HTD + A N LS R Sbjct: 544 KDVLYEFDKADLTELSKGKLDYLYTILIDNPDIDIELSAHTDN---KGTAEYNMDLSNRR 600 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDILVEDR 341 A S L+ G+ +R++ G+ + + +P + NRR + V + Sbjct: 601 AQSCLDYLVTKGIPAERMTS-KGYGLTKPVAPNQFSDGKDNPEGRAMNRRTEFKVLKK 657 >gi|298207484|ref|YP_003715663.1| OmpA family protein [Croceibacter atlanticus HTCC2559] gi|83850120|gb|EAP87988.1| OmpA family protein [Croceibacter atlanticus HTCC2559] Length = 626 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 102/290 (35%), Gaps = 21/290 (7%) Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQ----NKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 YF+ G + + N + ++ D+ +++ G + + Sbjct: 342 YFSSDGHLGLGGLDVFYASNNNGQYGKAKNIGTPVNSKGDDFAFTLNLESGNGYVSSNRG 401 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + L +NI+ ++ + + ++ +K + + +++ +KE + Sbjct: 402 -KALVDNIYGVTLIEPLCEVQLAVKVVDDKTNNAISNANVDLYDDKENKITTVVTDANGM 460 Query: 184 LAMKRK-KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP-----MF 237 + ++ I S V K E T I I + +F Sbjct: 461 TNFTVQCEQAYQAQVNIDDYESNSVTMAATKDATKELTVRLKPIEAIVTEDRVILNPILF 520 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 D S P+ L K+ +V+ E I + HTD + N LS RA S Sbjct: 521 DYDKSNIKPQAAFELDKLVQVMNKYPEMEIFVESHTDN---KGPNDYNMSLSERRAKSTV 577 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVEDR 341 Q ++ G++++RIS GF + + SD NRR + ++ + Sbjct: 578 QYVVSKGIAKERISG-KGFGESKPAVECGENCSDEQRQTNRRSEFVIIKK 626 >gi|227536324|ref|ZP_03966373.1| outer membrane protein, peptidoglycan-associated lipoprotein [Sphingobacterium spiritivorum ATCC 33300] gi|227243821|gb|EEI93836.1| outer membrane protein, peptidoglycan-associated lipoprotein [Sphingobacterium spiritivorum ATCC 33300] Length = 650 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L ++ + + I + HTD+ R A+ N +LS +RA +A ++ Sbjct: 549 IREDAKPILNQLVRTMRDNPTLKIELSSHTDS---RATAKYNMKLSQNRAQAAVDYIVSR 605 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++ DRI G+ +L SD + ANRR +I V + Sbjct: 606 GIARDRIVA-KGYGESKLVNKCADGVKCSDAEHQANRRTEIKVLE 649 >gi|167035318|ref|YP_001670549.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861806|gb|ABZ00214.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 308 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L I + + I + GH+D N LS RA + Sbjct: 179 FPGGGTELDASARARLDVILDYMKADPTVNHIELDGHSDN---SGNRLTNRDLSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 GV+E++I + + ++ + NRR++I ++ Sbjct: 236 VADYFKAHGVAEEQII-VRFHGEQYPLVKNNSAANRARNRRVNIELDR 282 >gi|86143638|ref|ZP_01062014.1| Thrombospondin type 3 repeat:OmpA/MotB [Leeuwenhoekiella blandensis MED217] gi|85829681|gb|EAQ48143.1| Thrombospondin type 3 repeat:OmpA/MotB [Leeuwenhoekiella blandensis MED217] Length = 461 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + +FD + + L +I ++ + GH D+ + A N LS Sbjct: 353 EAGRILFDTDKATIRTSSYETLARIASIVKEYPTASFEVEGHADSR--ASNAY-NMDLSE 409 Query: 290 DRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 RA S L K GV+ ++ I + + + NRR+ + +E Sbjct: 410 RRAQSVVDYLTSKEGVNASQL-SIKAYGEEQPIAPNTTAAGMQLNRRVKLTLE 461 >gi|302189602|ref|ZP_07266275.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 831 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 24/268 (8%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++N P ++ ID + VD + S + + + +Q++ Sbjct: 569 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 625 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + K + +++ + + ++++L + L+ Sbjct: 626 KARIPDYWYPAIYKQVQRDTNVSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 683 Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261 + + + + I I + +F + L I L + Sbjct: 684 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 743 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH D A+ N ++S RA + L+ G+ + + + G ++ Sbjct: 744 TPNVGKIVITGHADQI---GDAQSNLQVSRQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 799 Query: 320 LKIASDPMNSA---------NRRIDILV 338 + D NRR++I V Sbjct: 800 PLVHCDMQMPRAELIHCLEPNRRVEIEV 827 >gi|260591055|ref|ZP_05856513.1| OmpA family protein [Prevotella veroralis F0319] gi|260536920|gb|EEX19537.1| OmpA family protein [Prevotella veroralis F0319] Length = 695 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 34/145 (23%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 I++ + +D + PE+ L + ++L + V I + HTD + N Sbjct: 522 INVPVLIDNIFYDFDKATLRPESEKALDDLVKLLNENPNVTIELSAHTDC--IGSADY-N 578 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL------------------------ 320 RLS RA + L G+++DR++ + G+ R Sbjct: 579 KRLSQRRADAVVAYLTAHGIAQDRLTPV-GYGKERPKKIRKKLTEKYNWLKENDVLTEDF 637 Query: 321 --KIASDPM---NSANRRIDILVED 340 K+ D N NRR + +V Sbjct: 638 IKKLPKDKQEVCNQLNRRTEFIVLR 662 >gi|187927866|ref|YP_001898353.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12J] gi|241662454|ref|YP_002980814.1| OmpA/MotB domain-containing protein [Ralstonia pickettii 12D] gi|187724756|gb|ACD25921.1| OmpA/MotB domain protein [Ralstonia pickettii 12J] gi|240864481|gb|ACS62142.1| OmpA/MotB domain protein [Ralstonia pickettii 12D] Length = 218 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L + I GHTD+ F + ++ RLS+ RA + Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLNGINLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341 L+ G+ +R+ G +LK+ DP + + NRR+D+ +V R Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVDVEVVGTR 215 Query: 342 QG 343 + Sbjct: 216 KA 217 >gi|46579833|ref|YP_010641.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449248|gb|AAS95900.1| OmpA family protein [Desulfovibrio vulgaris str. Hildenborough] Length = 357 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ +L + ++ + + + GHT N +LS RA S Sbjct: 256 FALNSAKLDASATSILTEAARIIKANPGKKLLVAGHTCNL---GTDAYNLKLSDARAKSV 312 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L+K GV R+ GF + K + + S NRR+++ Sbjct: 313 KDFLVKQGVEASRLD-TFGFGESQPKYDNGTEQGRSMNRRVEL 354 >gi|24375049|ref|NP_719092.1| OmpA family protein [Shewanella oneidensis MR-1] gi|24349795|gb|AAN56536.1|AE015790_7 OmpA family protein [Shewanella oneidensis MR-1] Length = 370 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 + + F S++ E ++++ + + E + I GH N L Sbjct: 251 QEDVGSIQFANDSAVVKKEYYKDIERLANYMNKNPEFTVEIAGHASNV---GKPEYNMVL 307 Query: 288 SLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQ 342 S RA + ++L++ G+S+ R++ +G+ + +A + ++ANRRI+ +V + Sbjct: 308 SDKRADAVAKILVEKYGISQSRVTS-NGYGITKPLVAGNSKEAHAANRRIEAIVTTTE 364 >gi|332993983|gb|AEF04038.1| sodium-type flagellar protein MotY [Alteromonas sp. SN2] Length = 292 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ + L IGE L +++ + + G+TD+ +N +LS+ RA Sbjct: 192 STELTKYSQKRLTMIGEYLKEDSDLELVLLDGYTDSY---GGRWNNEQLSIRRANEVKSY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRI 334 L GV +DRI +++G R +D + NRR+ Sbjct: 249 LTTIGVPDDRI-QLTGHGEKRHIANNDTRESRAQNRRV 285 >gi|332524606|ref|ZP_08400809.1| OmpA family domain protein [Rubrivivax benzoatilyticus JA2] gi|332107918|gb|EGJ09142.1| OmpA family domain protein [Rubrivivax benzoatilyticus JA2] Length = 240 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ I L + L + + GHTD + R++ N LS +RA + Sbjct: 138 FEPGSARLTDAGIERLDGLLAALNRAPARRFEVVGHTDDAGPRDL---NLALSRERAEAV 194 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L+ GV+ RI + G + + NRRI++ Sbjct: 195 RAHLVARGVAAARIE-VRGAGPDEPAADNGTAAGRARNRRIEL 236 >gi|295134914|ref|YP_003585590.1| OmpA/MotB domain-containing protein [Zunongwangia profunda SM-A87] gi|294982929|gb|ADF53394.1| OmpA/MotB domain-containing protein [Zunongwangia profunda SM-A87] Length = 618 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 16/153 (10%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP-----MFDKSSSIPLPETIVVLQ 253 + S +G V + + GV F + L+ I F+ + P L Sbjct: 467 VKSITTGNVHRDTLDGVNFLLSSYNDLVEIDGDEEKIKIDPIFFEFNEYDIRPRAAKQLD 526 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 I VL E I I HTD+ R N LS +RA S L+ G++E+RI I Sbjct: 527 HIVYVLESFPEMKIKIESHTDS---RGSDTYNLLLSQNRAKSTKNYLISRGIAENRIVSI 583 Query: 313 SGFAHHRLKIA-------SDPMNSANRRIDILV 338 G+ + +D + NRR + ++ Sbjct: 584 KGYGEIEILNRCVNGVECNDEEHEENRRSNFII 616 >gi|172062069|ref|YP_001809721.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171994586|gb|ACB65505.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 555 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 229 IDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 + + +F + P L + ++ + + + I GH D+ A N R Sbjct: 438 VQIDSLSLFASGKATFSPAHERRELAHVLRLIRENPDQRVLIEGHADSE---GSADANLR 494 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 LS RA + L+ G I G R + + + NRR+D+ + Sbjct: 495 LSEARARAIRDWLVAEGGLSVARFAIQGMGDIRPIADNRSEAGRALNRRVDVSLIP 550 >gi|118588450|ref|ZP_01545859.1| probable outer membrane lipoprotein [Stappia aggregata IAM 12614] gi|118439156|gb|EAV45788.1| probable outer membrane lipoprotein [Stappia aggregata IAM 12614] Length = 162 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 II+ FD+ S++ E + ++ + L + ++ I+GH D + Sbjct: 40 IINVGRRIYFDQGSAVVTDEARITIENQAKWLNKNKKWLVKIQGHADDPGSEAAQKT--- 96 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334 LS RA + L+K GVS R+ + G+ R D S NRR+ Sbjct: 97 LSTQRANAVMAELVKLGVSPKRMW-VKGYGVERPVTDCDQVTCQSQNRRV 145 >gi|326794907|ref|YP_004312727.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326545671|gb|ADZ90891.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 209 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD I P ++K+ + + + I I GHTD N LS RA + Sbjct: 81 LFDSGKDIVKPRYYSEVKKLADFMRKNPQSSIVIEGHTDDV---GSEELNLGLSQRRASA 137 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 VL S + K G+ R +D NRR+ + RQ Sbjct: 138 IASVLTDSFMVRKSRVKGVGYGETRPIATNDTATGREQNRRVVAEIFARQ 187 >gi|71733309|ref|YP_276024.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486625|ref|ZP_05640666.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624957|ref|ZP_06457911.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650466|ref|ZP_06481809.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|71553862|gb|AAZ33073.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325629|gb|EFW81691.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320327087|gb|EFW83101.1| sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330867247|gb|EGH01956.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879063|gb|EGH13212.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. glycinea str. race 4] gi|330889567|gb|EGH22228.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. mori str. 301020] gi|330989530|gb|EGH87633.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010107|gb|EGH90163.1| sodium-type flagellar protein MotY [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 301 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 G+ E +I+ + + ++ + NRR+++ +E Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLVPNTNEANRARNRRVNVHLER 281 >gi|269962741|ref|ZP_06177084.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832543|gb|EEZ86659.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 282 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 17/208 (8%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDIVIQRRRLNQLEQQ 128 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255 + LS E R+ + I I D N F S+ P+ + L + Sbjct: 129 LDYVLSQTTCKPPQD---IEALRSDLNIVADIYDLLNVDNQFAVDSAEINPKYMGHLAEA 185 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + GH DA+ N +L+ DRA + L G++ DR+ + Sbjct: 186 AYILRDHPSLSLVVTGHADAT---GTPEYNQKLAQDRAEQVKRYLNVFGITSDRV-QTKS 241 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVED 340 NRR+ I V + Sbjct: 242 VGETLPLYEGQTPAVRLTNRRVSIEVLN 269 >gi|315637079|ref|ZP_07892302.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315478615|gb|EFU69325.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 854 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F+ +S++ ET + L + I I GH P + A N +LS RA Sbjct: 748 LFENNSAVIKEETKGKVLSFARYLVDNKEFNTI-IEGHASKDPTASAAH-NQKLSEQRAS 805 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 + +L+ +GV RI I G H+ + + NRRID ++ + Sbjct: 806 AIKNLLISNGVEASRIQSI-GKGHNEPIADNSTAEGQALNRRIDAILIRK 854 >gi|294782096|ref|ZP_06747422.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA] gi|294480737|gb|EFG28512.1| outer membrane porin F [Fusobacterium sp. 1_1_41FAA] Length = 183 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 13/146 (8%) Query: 202 TLSGLVADNIVKGVLFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + A+ + + G+ I I+ +FD + L + Sbjct: 39 AIEDTEANKKPLEDIIVFDQEGVTIRREGNNLILSMPELILFDFDKYVVKDGIKPSLATL 98 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + L + + I I G+TD F N LS+ RA + + L+ G I I G Sbjct: 99 AKALGENKDIHIKIDGYTD---FIGTEAYNLDLSVKRARAIKEFLISKGAIGSNI-SIEG 154 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 + + S NRR++ ++ Sbjct: 155 YGEQNPADTNQTAAGRSRNRRVEFII 180 >gi|70732179|ref|YP_261935.1| OmpA family outer membrane protein [Pseudomonas fluorescens Pf-5] gi|68346478|gb|AAY94084.1| outer membrane protein, OmpA family [Pseudomonas fluorescens Pf-5] Length = 304 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F LQ + + + + + GH+D N LS RA + Sbjct: 178 FPGGGIDLDARAKAKLQVMVDFIKADPTVNHVELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + +G++E++I + + + NRR+++ +E Sbjct: 235 VMEFFKANGLAENQIV-VRFHGERYPLAPNTNAANRAKNRRVNVHLER 281 >gi|327404330|ref|YP_004345168.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319838|gb|AEA44330.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 809 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +I L + L + +L + I GHTD + A+ N LS +RA + Sbjct: 706 FASGKAIILATSFKSLDDLAALLIKKPEWKLQIAGHTDN---KGDAKKNLTLSKNRAEAV 762 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 + L GV ++ K F + + NRR++ Sbjct: 763 KKYLTSKGVDATKL-KPEWFGQTKPIATNATPEGRQKNRRVE 803 >gi|302338591|ref|YP_003803797.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] gi|301635776|gb|ADK81203.1| OmpA/MotB domain protein [Spirochaeta smaragdinae DSM 11293] Length = 1410 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 16/143 (11%) Query: 215 VLFETTRTG--ILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISI 268 V R G + I SII Q N F + VL ++ E+L + + I + Sbjct: 1269 VDVLVVREGNLLKIKIASIIFQPNKAEFVEDDPEVAERNRYVLDRLAEILQKYRSYQIMV 1328 Query: 269 RGHTD----ASPFRNIARDNWRL---SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 GH A P + + L S RA + L++ G+ +R+ + G + Sbjct: 1329 EGHAALINWADPVKAEREEQTELMPLSQARAEKVVEALVERGIDRNRLDAV-GVGGTKPL 1387 Query: 322 IA-SD-PMNSANRRIDILVEDRQ 342 + SD NRR++ ++E ++ Sbjct: 1388 VPHSDIENRWKNRRVEFILEKKR 1410 >gi|75677209|ref|YP_319630.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74422079|gb|ABA06278.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 213 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD S+ P T L +G+ L + VI + GHTD + N LS RA Sbjct: 101 FDFDSAAVTPRTEPQLHSLGKALTSDELAGSVIMLGGHTDG---KGSDAYNQNLSERRAE 157 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L+++ +G+ K +DP + NRR++++ Sbjct: 158 AVKRFLVETYKIPAANLVAAGYGKEGYKNPADPFAAENRRVEVV 201 >gi|298372620|ref|ZP_06982610.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275524|gb|EFI17075.1| OmpA family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 681 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + ++ E+ L + ++L + + I + HTD+ N LS Sbjct: 540 KMENIFYEFGKWNITKESEAELNNLVKLLEDNPNITIELSAHTDSV---GTDASNIELSQ 596 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 RA SA + L+ +G+++DR++ G+ ++ I Sbjct: 597 KRANSAVEYLIGAGIAKDRLTA-KGYGENKPVIVD 630 >gi|284038460|ref|YP_003388390.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283817753|gb|ADB39591.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 798 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + K TL G ++ + + G +I+I + +D + + P+ V L Sbjct: 650 EAMKDNMGTLGGHISKDGTGTTDIAMFKKGDIITI----DNIYYDLNKATIRPDAAVELD 705 Query: 254 KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K+ E+L + I +R HTD+ N LS +RA S L G++ +R+ Sbjct: 706 KVVELLTKYPAMTIEMRSHTDSRATAVY---NKTLSGNRAKSVVAYLKSKGIAMERMIA- 761 Query: 313 SGFAHHRLKIA-------SDPMNSANRRIDILVE 339 G+ +L S+ + NRR +I + Sbjct: 762 KGYGESQLLNKCKDGVECSEEDHQKNRRTEIKIL 795 >gi|229520255|ref|ZP_04409681.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM 11079-80] gi|167832518|gb|ACA01828.1| hypothetical protein VPI2_0011c [Vibrio cholerae] gi|229342621|gb|EEO07613.1| chemotaxis protein MotB-related protein [Vibrio cholerae TM 11079-80] Length = 244 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 33/187 (17%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234 L ++ ++ D+ I +A NI+ V E + +++ I D +T Sbjct: 40 ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99 Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283 F SSIP T ++ IG VL + + I I GHTD+ + Sbjct: 100 LTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTIFIEGHTDSDSIHYRGKG 159 Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329 NW LS DRA S + V G E+ ++ +SG+A R L ++ S Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLHESNQQEKS 219 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 220 QNRRIDI 226 >gi|262198258|ref|YP_003269467.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081605|gb|ACY17574.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 533 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQ-KIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE++ +L ++ L + + + I G+TD R N LS RA S Sbjct: 427 FDTGQSALDPESMHLLNTQVLPQLEMAGGMYVRIEGNTDNV---GDKRGNQALSEARAQS 483 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 L++ G++ R+S G ++ +ANRR DI+ Q Sbjct: 484 VLDYLVQKGINAKRLSA-RGNGSDSPVASNKTADGRAANRRTDIVFISGQ 532 >gi|126729072|ref|ZP_01744886.1| OmpA/MotB [Sagittula stellata E-37] gi|126710062|gb|EBA09114.1| OmpA/MotB [Sagittula stellata E-37] Length = 297 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLD 290 +F SS +P+ L ++ +A + + GHTDA+ N LS + Sbjct: 190 DGAVLFAHDSSDLMPDAKAALDELAAQIADANLSAFRVVGHTDAT---GSDAYNLTLSQE 246 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 RA + V + G +++ NRR++I+ Sbjct: 247 RAAAVRDYYASMDVLTNVSISSEGRGESNPLASNETEEGREQNRRVEII 295 >gi|326800681|ref|YP_004318500.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326551445|gb|ADZ79830.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 650 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 N F + LP + L ++ ++L H+ I I GHTD + A+ N LS R Sbjct: 539 NNIFFPTNGYELLPTSESDLMELFQLLQHNKHIRIEITGHTDNT---GSAQANQVLSEKR 595 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 A + Y L+ G+ + R+ G+ + + NRR + + Sbjct: 596 ALAVYAYLLSKGIDKTRL-AYKGYGQNNPIADNTTEKGKQQNRRTEFKI 643 >gi|300771828|ref|ZP_07081699.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761214|gb|EFK58039.1| OmpA/MotB domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 650 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L ++ + + + + HTD+ R A+ N +LS RA SA ++ Sbjct: 549 IRDDAKPILNQLARTMRDNPGLRVELSSHTDS---RATAKYNMKLSQSRAQSAVDYIVSR 605 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++ +R+ G+ +L ++ + ANRR +I + D Sbjct: 606 GIARNRLIA-KGYGESQLVNNCKDGVSCTEAQHQANRRTEIKILD 649 >gi|239628950|ref|ZP_04671981.1| chemotaxis motB protein [Clostridiales bacterium 1_7_47_FAA] gi|239519096|gb|EEQ58962.1| chemotaxis motB protein [Clostridiales bacterium 1_7_47FAA] Length = 277 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 17/186 (9%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 DL+ + E N + + + +A+ I + D IV Sbjct: 65 PQDLKYPVIGENNEESTQVPTGSQNTQASAREMALMARDIQTYFDSENLDAIVSN----- 119 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASP 276 + + I +N +FD S+ ++ +L +G +L + I I GHT A Sbjct: 120 SENAVFIRF---KNDLLFDPDSASLRADSKSMLDAVGIMLKEKQDNILAVYINGHT-AQA 175 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 ++ D LS +RA + L G ++ G+ + + NRR Sbjct: 176 ANSLINDRL-LSSERADNVAIYLEDQVGFDPKKLI-CRGYGKYYPIADNATREGREQNRR 233 Query: 334 IDILVE 339 +D+++ Sbjct: 234 VDMIIL 239 Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 11/213 (5%) Query: 22 AIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK 81 W YAD +T+++ FF++++ I+ + + I + Sbjct: 2 KRQKDEEGGQEWLNTYADMITLVLTFFVLLYSISNVNISKLEEIASAM-----QRQLGIE 56 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 D ++ P+ + + +E T+ + + ++ + Y + Sbjct: 57 AQTDIEDVPQ-DLKYPVIGENNEESTQVPTGSQNTQASAREMALMARDIQTYFDSENLDA 115 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 NS + K+ S+ + L + M ++K+ LA I+ Sbjct: 116 IVSNSENAVFIRFKNDLLFDPDSASLRADSKSMLDAVGI-----MLKEKQDNILAVYING 170 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + I +L + I + DQ Sbjct: 171 HTAQAANSLINDRLLSSERADNVAIYLEDQVGF 203 >gi|126173969|ref|YP_001050118.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|153000261|ref|YP_001365942.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185] gi|160874894|ref|YP_001554210.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195] gi|217973710|ref|YP_002358461.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223] gi|304409838|ref|ZP_07391458.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307304194|ref|ZP_07583947.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|125997174|gb|ABN61249.1| OmpA/MotB domain protein [Shewanella baltica OS155] gi|151364879|gb|ABS07879.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|160860416|gb|ABX48950.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|217498845|gb|ACK47038.1| OmpA/MotB domain protein [Shewanella baltica OS223] gi|304352356|gb|EFM16754.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306913092|gb|EFN43515.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|315267131|gb|ADT93984.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 289 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D+ + + L ++ E LA+ V + + +TD+ R++ N ++S RA S Sbjct: 184 YDEGGTDLTRFSQQQLSRVQEYLAYDPLVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + SG+ +DRI + G R ++D M + NRR+ I + Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNDDMDERARNRRVVIRI 285 >gi|332288389|ref|YP_004419241.1| outer membrane protein A [Gallibacterium anatis UMN179] gi|330431285|gb|AEC16344.1| outer membrane protein A [Gallibacterium anatis UMN179] Length = 247 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD S+ PE+ V++ + L+ + + I I G+TD N LS RA + Sbjct: 141 LFDFDSANLKPESQKVIEDLVNKLSKN-KQIWITGYTDRL---GSESYNLALSQRRAVAV 196 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336 ++ G+ RI I G A + ++ NRR+ I Sbjct: 197 KNAMVALGIPASRIKAIGMGKADQVKACEKETGSALRQCLAPNRRVVI 244 >gi|187925345|ref|YP_001896987.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] gi|187716539|gb|ACD17763.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 266 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ L + V +++ G+TD + + N +LS RA + Sbjct: 163 FATDSAALSSVAKENLDRFMNV-NQGVNLHRVTVTGYTDKT---GLEAHNLKLSQARAAA 218 Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338 Q L G+ D+ +++ G A A+ + NRR+D+ V Sbjct: 219 VMQYLRDGGLHADQFVARGLGSADPVAPNATAEGRTQNRRVDVRV 263 >gi|153877197|ref|ZP_02004126.1| Outer membrane protein A [Beggiatoa sp. PS] gi|152066338|gb|EDN65873.1| Outer membrane protein A [Beggiatoa sp. PS] Length = 148 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 14/117 (11%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVISIRGHTDASPFRNIARDNWR 286 + N F+ + + +L + +AH I I GH D+SP N + + Sbjct: 39 EDNRITFEPGKATLTDQVKSILDTLAAKICLEIAHI-NAIVITGHADSSPTDNYKQ---K 94 Query: 287 LSLDRAYSAYQVLMKS--GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 LSL RA + L +++D++ G A A ++ NRR++I V + Sbjct: 95 LSLARAVAVADYLKSRCPALTDDKLI-TKGLADQYPLSAD---SAKNRRVEIRVMKK 147 >gi|26989809|ref|NP_745234.1| OmpA domain-containing protein [Pseudomonas putida KT2440] gi|24984708|gb|AAN68698.1|AE016499_3 OmpA domain protein [Pseudomonas putida KT2440] Length = 831 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 21/193 (10%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + + ++ + +I + R D+ + + + + N + + ++ Sbjct: 642 GKSMAAAGSEAGGNQDYLYASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQS 701 Query: 220 TRTGILISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDA 274 R I I + +F + E L I L ++ I I GH D Sbjct: 702 LRA---IETITLESDTLFAFGRADFQSLKNEGQHQLSAIASKLLNTPNIGKIIISGHADQ 758 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---- 330 ++ N ++S RA + L+ GV + + G + + D Sbjct: 759 L---GDSQGNLQVSKQRAQTIRTYLVGKGVPAELVVA-QGEGSRKPLVNCDMQQPRTQLI 814 Query: 331 -----NRRIDILV 338 NRR++I V Sbjct: 815 KCLEPNRRVEIEV 827 >gi|148547849|ref|YP_001267951.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148511907|gb|ABQ78767.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 831 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 21/193 (10%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + + ++ + +I + R D+ + + + + N + + ++ Sbjct: 642 GKSMAAAGSEAGGNQDYLYASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQS 701 Query: 220 TRTGILISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDA 274 R I I + +F + E L I L ++ I I GH D Sbjct: 702 LRA---IETITLESDTLFAFGRADFQSLKNEGQHQLSAIASKLLNTPNIGKIIISGHADQ 758 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---- 330 ++ N ++S RA + L+ GV + + G + + D Sbjct: 759 L---GDSQGNLQVSKQRAQTIRTYLVGKGVPAELVVA-QGEGSRKPLVNCDMQQPRTQLI 814 Query: 331 -----NRRIDILV 338 NRR++I V Sbjct: 815 KCLEPNRRVEIEV 827 >gi|119773836|ref|YP_926576.1| Outer membrane protein-related peptidoglycan-associated (lipo)protein [Shewanella amazonensis SB2B] gi|119766336|gb|ABL98906.1| Outer membrane protein-related peptidoglycan-associated (lipo)protein [Shewanella amazonensis SB2B] Length = 481 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 8/112 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +FD S LPE+ VL+ + L + GHTD + N LSL R Sbjct: 371 DGLLFDFDSDRMLPESQPVLEVLATYLKQHPAKGFYVVGHTDD---KGERAYNQSLSLRR 427 Query: 292 AYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 A + Q L + + +++ G + +++ + + NRR+++++ Sbjct: 428 ADAVIQSLTQQYHIPASQLTA-HGNGEYSPVASNENESGQALNRRVELVLRS 478 >gi|255264472|ref|ZP_05343814.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62] gi|255106807|gb|EET49481.1| OmpA/MotB domain protein [Thalassiobium sp. R2A62] Length = 227 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ VL++ + + + GHTD N +L L RA + Sbjct: 82 FPFNSNALDENARAVLRQQADWIRQFPEVRFKVYGHTD---LVGGTAYNRQLGLRRAQAV 138 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ ++ F R I ++ NRR Sbjct: 139 VIYLTSQGISRSRLEAVASFGETRPVIQTNGQERRNRR 176 >gi|113969260|ref|YP_733053.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113883944|gb|ABI37996.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 485 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + + GHTD + N LS RA + Sbjct: 378 LFDYDSERMLPESKPVLEVLASYLKQNPTLSFYVVGHTDD---KGERSYNQSLSERRAAA 434 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + +D NRR+++++ + Sbjct: 435 VIKQLSDGFKIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484 >gi|254229410|ref|ZP_04922826.1| OmpA family protein [Vibrio sp. Ex25] gi|262396871|ref|YP_003288724.1| outer membrane protein [Vibrio sp. Ex25] gi|151938101|gb|EDN56943.1| OmpA family protein [Vibrio sp. Ex25] gi|262340465|gb|ACY54259.1| outer membrane protein [Vibrio sp. Ex25] Length = 205 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S++ + + L I I+G+ AS N LS RA + Sbjct: 83 LFDNDSALINQIFKNKIDGLAAFLKKYPTTSIEIQGY--ASKVGRAEY-NLNLSRHRAEN 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 +L++ G+ DR+ I F +L ++ NRR+ V +QG Sbjct: 140 VRNLLIEKGIPGDRL-AIIAFGDTQLAEPGMDRVSHALNRRVTATVVGQQG 189 >gi|46200841|ref|ZP_00207866.1| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum magnetotacticum MS-1] Length = 342 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + PE VLQ+ + I + HTD A+ N LS R + Sbjct: 240 FFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTD---LSGSAKYNQALSEKRGAA 296 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 L + G+ +I ++ G + + NRR++I++ Sbjct: 297 VKAQLEQLGIPASQIVVVAKGKSSPMVPTPDGVREPQNRRVEIVL 341 >gi|309781036|ref|ZP_07675774.1| outer membrane protein A [Ralstonia sp. 5_7_47FAA] gi|308920102|gb|EFP65761.1| outer membrane protein A [Ralstonia sp. 5_7_47FAA] Length = 218 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L + I GHTD+ F + ++ RLS+ RA + Sbjct: 102 LFDFDKAVLKPEGKAKLDDLISKLNGINLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341 L+ G+ +R+ G +LK+ DP + + NRR+D+ +V R Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVDVEVVGTR 215 Query: 342 QG 343 + Sbjct: 216 KA 217 >gi|86131405|ref|ZP_01050003.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85817850|gb|EAQ39018.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 568 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 N ++D P+ L ++ + + + + + HTD+ R N LS +R Sbjct: 456 NNILYDLDKYDIRPDARPELNRLAQFMKDNPGIRVEVSSHTDS---RASDSYNQTLSQNR 512 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 A +A ++ GVS +I+ G+ RL S+ + NRR ++ V Sbjct: 513 ANAAVDYVVSQGVSRSKITG-KGYGESRLLNECADGVSCSETKHQINRRTEMKV 565 >gi|331006223|ref|ZP_08329545.1| Outer membrane protein [gamma proteobacterium IMCC1989] gi|330419980|gb|EGG94324.1| Outer membrane protein [gamma proteobacterium IMCC1989] Length = 338 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S + ++ + + I GHTD++ A N LS R Sbjct: 224 FASNSDKVPSAYLPEIENLATFMQQYPTATAVIGGHTDST---GSAEYNQSLSQRRVNEV 280 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRID--ILVE 339 ++L + GV R+S I G+ + +D + NRR++ I VE Sbjct: 281 ARLLSANYGVDASRVSAI-GYGEAQPIAGNDTAVDRAKNRRVEASITVE 328 >gi|170697118|ref|ZP_02888213.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170137954|gb|EDT06187.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 171 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 45 ALKSAGFQETGQGFE---FGSSGPILFDFDRYNLKPDVRRIVERIGRTLKSAGINGVRVY 101 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D +A D LS RA L+ G+ RI+ + G + + Sbjct: 102 GYSDDE--GEVAYD-LELSRRRAEVVAIELVDVGLDGKRIAVVGKGKSDPVGDNRTPTGR 158 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 159 AQNRRAAIVVSPR 171 >gi|83749098|ref|ZP_00946103.1| Outer membrane protein [Ralstonia solanacearum UW551] gi|83724219|gb|EAP71392.1| Outer membrane protein [Ralstonia solanacearum UW551] Length = 218 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD + ++ PE L + L + T + I GHTD+ F + ++ RLS+ RA + Sbjct: 102 LFDFNKAVLKPEGKAKLDDLVSKLKNITLKVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341 L+ G+ +R+ G +LK+ DP + + NRR+++ +V R Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVEVEVVGTR 215 Query: 342 QG 343 Sbjct: 216 SA 217 >gi|83954511|ref|ZP_00963222.1| OmpA family protein [Sulfitobacter sp. NAS-14.1] gi|83840795|gb|EAP79966.1| OmpA family protein [Sulfitobacter sp. NAS-14.1] Length = 234 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ VL++ + + GHTDA N L L RA S Sbjct: 90 FAFNSAQLDGAAQAVLRRQAGWIRQFPEVRFRVYGHTDAV---GSNSYNKALGLRRAQSV 146 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + F + I + ANRR Sbjct: 147 VGFLSTQGISRSRLEAVVSFGETQPLIVTQGRERANRR 184 >gi|262065804|ref|ZP_06025416.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693] gi|291380509|gb|EFE88027.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693] Length = 171 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ FD S+ P+ +L + + + + +++ GHTD+ + N Sbjct: 58 TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYEVTLEGHTDS--IGSNQY-NIG 114 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 LS RA + L++ G++E+RI I ++ NRR++ + R Sbjct: 115 LSRRRAEAVKAKLIEFGLAEERIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 171 >gi|37704634|gb|AAR01589.1| OprF [Pseudomonas sp. MFY79] Length = 296 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 214 FDFDKSVVKPNSYADVKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSQRRADAV 270 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322 QVL+K G+ R+S + G+ R Sbjct: 271 KQVLVKDGIDAGRVSSV-GYGESRPVA 296 >gi|306820526|ref|ZP_07454159.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551440|gb|EFM39398.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 432 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + + VL K+ +VL + E I GHTD+ + N LS +RA S Sbjct: 329 LFDVNKYDIREDANDVLMKLIDVLKKAKVEKFEIYGHTDSD---DTDEYNQVLSENRANS 385 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L+K+G++ + GF + + NRR++I++ Sbjct: 386 VKDFLVKNGITAN--IATKGFGEKKPIATNSTKEGKQLNRRVEIII 429 >gi|24375456|ref|NP_719499.1| OmpA family protein [Shewanella oneidensis MR-1] gi|24350304|gb|AAN56943.1|AE015827_15 OmpA family protein [Shewanella oneidensis MR-1] Length = 228 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR+G I I++ N F + VL + V ++ +++ G+TD+ Sbjct: 105 VSVTRSGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 162 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N RLS RA LM GV+ R+ G A+ + NRR Sbjct: 163 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAEGRAQNRR 219 Query: 334 IDILVED 340 ++I++ Sbjct: 220 VEIVLTP 226 >gi|228018095|gb|ACP52726.1| fibronectin-binding protein [Campylobacter coli] Length = 211 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 123 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRANSV 179 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 180 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 209 >gi|323491818|ref|ZP_08096993.1| OmpA family protein [Vibrio brasiliensis LMG 20546] gi|323313953|gb|EGA67042.1| OmpA family protein [Vibrio brasiliensis LMG 20546] Length = 188 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 11/147 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + ++ + + S L I G+ +E +++ + D F+ SS P++ L Sbjct: 43 MGQQRTQSYSDLQNFLISNGIDYELLPGNHVMVRLKDTIK---FNTGSSRVAPDSKYWLD 99 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 +G LA I I GH D++ + LS+ RA + Q L+ + V+ D I Sbjct: 100 MMGNYLATQPSIDIVIDGHADSTGAPSFNDS---LSMKRAKAVKQQLVNNRVAMDSIY-T 155 Query: 313 SGFAHHRLKIASDPMNSA--NRRIDIL 337 G+ + ++ NRR+++L Sbjct: 156 RGYGEYVPACSNRTKAGKACNRRVEVL 182 >gi|222054709|ref|YP_002537071.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] gi|221563998|gb|ACM19970.1| OmpA/MotB domain protein [Geobacter sp. FRC-32] Length = 474 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + P + K+ E + I GHTD + + N +LS +RA + Sbjct: 367 FETGRAEIQPRYHDEIAKVAEYMKRYPTTTALIEGHTDNTGTADF---NQKLSQERAENV 423 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS-ANRRI 334 L++ G+ R+S A RL + NRRI Sbjct: 424 VNYLVEKLGIERSRLSAKGYGASRRLAYNTTAEGRKKNRRI 464 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ E + ++GE + + I GHTD N LS RA S Sbjct: 243 FDIDKALIRAEDHREIARVGEFMQRYPDTTAVIEGHTDNV---GTDEHNLDLSRRRAESV 299 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 L+ G+ R+S +G+ + NRRID +++ Sbjct: 300 TNYLVDKFGIDRSRLSS-TGYGFKHPVADNGTEAGKQKNRRIDAIID 345 >gi|228018097|gb|ACP52727.1| fibronectin-binding protein [Campylobacter coli] Length = 224 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222 >gi|228018085|gb|ACP52721.1| fibronectin-binding protein [Campylobacter coli] Length = 224 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222 >gi|189466239|ref|ZP_03015024.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM 17393] gi|189434503|gb|EDV03488.1| hypothetical protein BACINT_02610 [Bacteroides intestinalis DSM 17393] Length = 224 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + L+++ ++L I+I GHTD N ++S DRAY+ Sbjct: 112 LFGFNSSALSNTSKASLRELAQILKEDPTTDIAIVGHTDKV---GTYEANMKVSKDRAYT 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L GVS + ++ G +++ S NRR+DI Sbjct: 169 VENYLQDCGVSPAQFKQVEGVGYNQ--YDDSMTASQNRRVDI 208 >gi|330947752|gb|EGH48208.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 102 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 8/101 (7%) Query: 246 PETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 P + +L K+ + L + + I G+TD++ +DN +LS DRA + VLM GV Sbjct: 1 PPSRTIL-KVVQFLQINPRRVVRIEGYTDST---GDRQDNLKLSKDRAQAVADVLMDLGV 56 Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQG 343 E RI + G+ A+ + + NRR++I+ D +G Sbjct: 57 DEKRIH-VEGYGQEFPVNANTSERGRAQNRRVEIVFSDEKG 96 >gi|255321572|ref|ZP_05362730.1| putative chemotaxis protein MotB [Campylobacter showae RM3277] gi|255301428|gb|EET80687.1| putative chemotaxis protein MotB [Campylobacter showae RM3277] Length = 355 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 120/330 (36%), Gaps = 42/330 (12%) Query: 33 WKIVYADFMTVLMAFFLVMWIINAT------DDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 W I YAD M LM F+ M II A +++ + K + ++ + + Sbjct: 15 W-ISYADLMAGLM--FVFMLIIGAVVVKYVLSQSDLAKLQKDLSEREKQIASSQSELVRK 71 Query: 87 QNPPERSSQNKIDLSID----EHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 +N + N + I + ++ G +K + L N + Sbjct: 72 ENVIKEIFSNLDRAKSENKELADINRLVNEMLEGVKKEKNELTNLTQTYEINLNDAN-KT 130 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + R + G+ L + + ++ + + + + K K +++D++ S+ Sbjct: 131 IADLQDRVLQLGQILAQKDEALNELSAKYGDEVSRYAALEEDFNKTKDKIKDISSLRSNV 190 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV---- 258 +S L A + V + + ++ + +FD S E L++I + Sbjct: 191 ISNLRA-KLGNKVSIDPSSG-----VVSLPESILFDTGSYELRDEAKARLKEILQTYFEA 244 Query: 259 ------LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI--- 309 +A + I I GHT++ N LS RAYS + S + R+ Sbjct: 245 ILNNEEIAKHIDRIVIEGHTNSI---GSYMYNLDLSQKRAYSVLD-FIYSWNKDKRLEHY 300 Query: 310 SKISGFAHHRLKIAS---DPMNSANRRIDI 336 SG + L + + DP S RI+I Sbjct: 301 LIASGRSFSDLVMKNGKEDPDASK--RIEI 328 >gi|152997425|ref|YP_001342260.1| OmpA/MotB domain-containing protein [Marinomonas sp. MWYL1] gi|150838349|gb|ABR72325.1| OmpA/MotB domain protein [Marinomonas sp. MWYL1] Length = 272 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 10/218 (4%) Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 N +++ H + S K ++ + E + P + I Sbjct: 53 KNSGDEQRLKETLHGVFDAVQKSIKPINIGEPIVGEPKDIEVVETKPIPAAPPTIEESNS 112 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 L++ + + SGL A T + +S+ + ++ +F + E Sbjct: 113 SAVYALLSQVVENQFSGLHASG-----QISVTESADWVSL-ELKSGLLFGQGEYDLTNEA 166 Query: 249 IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLMKSGVSED 307 + +L + VL VI + G+TD P + NW LS R+ S L+ GV Sbjct: 167 VALLILVANVLKAHPSVILVEGNTDDLPVNSRRLISNWHLSSLRSSSVVDELVYRGVDP- 225 Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 ++ GF+ K+ +D NRR+ + + R+ Sbjct: 226 KMIAPIGFSSEHPKVRNTNDYARQQNRRVILRISKREA 263 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 18 KKKVAIDDTPNNLGS---WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGK 74 +++V +P+ W + YADF+T+L AFF+ ++ ++ + ++ +++ + Sbjct: 11 RRRVVTKSSPSGAQGRDRWILSYADFITLLFAFFVALYSLSLKNSGDEQRLKETLHGVFD 70 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + + K I N E D+ + E + I +N Y L + Sbjct: 71 AVQKSIKPI----NIGEPIVGEPKDIEVVETKPIPAAPPTIEESNSSAVYALLSQVVENQ 126 Query: 135 SNSQQSEH 142 + + Sbjct: 127 FSGLHASG 134 >gi|228018087|gb|ACP52722.1| fibronectin-binding protein [Campylobacter coli] Length = 224 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222 >gi|228018083|gb|ACP52720.1| fibronectin-binding protein [Campylobacter coli] gi|228018091|gb|ACP52724.1| fibronectin-binding protein [Campylobacter coli] gi|228018093|gb|ACP52725.1| fibronectin-binding protein [Campylobacter coli] gi|228018101|gb|ACP52729.1| fibronectin-binding protein [Campylobacter coli] gi|228018103|gb|ACP52730.1| fibronectin-binding protein [Campylobacter coli] gi|228018105|gb|ACP52731.1| fibronectin-binding protein [Campylobacter coli] gi|228018107|gb|ACP52732.1| fibronectin-binding protein [Campylobacter coli] gi|228018115|gb|ACP52736.1| fibronectin-binding protein [Campylobacter coli] gi|228018117|gb|ACP52737.1| fibronectin-binding protein [Campylobacter coli] gi|228018125|gb|ACP52741.1| fibronectin-binding protein [Campylobacter coli] gi|228018127|gb|ACP52742.1| fibronectin-binding protein [Campylobacter coli] gi|228018129|gb|ACP52743.1| fibronectin-binding protein [Campylobacter coli] gi|228018131|gb|ACP52744.1| fibronectin-binding protein [Campylobacter coli] gi|228018133|gb|ACP52745.1| fibronectin-binding protein [Campylobacter coli] gi|228018135|gb|ACP52746.1| fibronectin-binding protein [Campylobacter coli] Length = 224 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222 >gi|257125161|ref|YP_003163275.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257049100|gb|ACV38284.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 366 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F IP L+ I V+ I GHTD++ N +LS+ RA + Sbjct: 250 FKVDGRIPNEREAGDLRAIAGVINQFADGGSIDFVGHTDST---GSDAYNQKLSVARAQN 306 Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 ++L + G+ IS I+G +D + NRR+++ ++ Sbjct: 307 VARLLREYGLKNT-ISYGTITGQGESNPADTNDTTDGRYNNRRVELFFQN 355 >gi|46202758|ref|ZP_00052660.2| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum magnetotacticum MS-1] Length = 382 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P+ + L++ A +S+ G+TD A N RLS RA + Sbjct: 152 FDLGSAKLSPQALQTLKEAAAAQAQMHAPLVSVAGYTDTL---GAADANLRLSRQRADAV 208 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 L+K GV+ I + +L +A + + NRR++I + Sbjct: 209 TAELVKLGVNPA-IISENALGETKLAVATGDNKAEAKNRRVEITL 252 Score = 41.4 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 18/107 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F SS I L+++ + +++ G TD + A N RLS +RA + Sbjct: 286 FFLPGSSRLGSADIARLKQVVAAQKTLKPKTVTVVGFTDQT---GSAATNARLSNERAQA 342 Query: 295 AYQVLMKSGVS----EDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + K G S E R ++ G A + RR++IL Sbjct: 343 VAAEIAKLGGSTTSVEARPGEVWGGA----------YDGRARRVEIL 379 >gi|162451691|ref|YP_001614058.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161162273|emb|CAN93578.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 632 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 23/135 (17%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN 279 G I I +Q + F I L ++ L+ + +VL + + + I GHTD R Sbjct: 387 RGDEIVITEQVH---FATDKDIILEDSNSTLEAVAQVLIDNPDIREVRIEGHTD---VRA 440 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-------ASDPMNS--- 329 N LS R S L+ GV R+ + G+ H + D ++ Sbjct: 441 TDLYNMALSQRRVASVMAYLIAKGVESSRLQAV-GYGHTQPIYDDTGCQGPDDQLSPDCQ 499 Query: 330 ----ANRRIDILVED 340 NRR+ + Sbjct: 500 FMTSKNRRVVFRILR 514 >gi|260425871|ref|ZP_05779850.1| OmpA family protein [Citreicella sp. SE45] gi|260420363|gb|EEX13614.1| OmpA family protein [Citreicella sp. SE45] Length = 203 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S P+ +++ + I GHTDA R N RLS +RA S Sbjct: 106 FATDSYAISPQGQARIREF--FRNATAFGFIITGHTDA---RASDAYNRRLSYNRANSVA 160 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 +V +G RI + G+ + + NRR++IL Sbjct: 161 RVARSAG---ARIVDVRGYGESYPVATNSTAEGMARNRRVEIL 200 >gi|319954323|ref|YP_004165590.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319422983|gb|ADV50092.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 639 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 13/122 (10%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 L+ I+ + T F+ +SS L K+ + + + H+D+ + + Sbjct: 520 LVEIL-KLKTIFFNTNSSYLNANAYPELDKVVAYMKEFPNARVEVGSHSDSR--DSDRYN 576 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDI 336 W LS RA S ++ G+SEDRI+ +G+ L S+ ++ NRR + Sbjct: 577 LW-LSDRRAKSTVSYIVSMGISEDRITA-TGYGETLLVNKCINDAPCSEAEHALNRRSEF 634 Query: 337 LV 338 +V Sbjct: 635 IV 636 >gi|157737365|ref|YP_001490048.1| hypothetical protein Abu_1119 [Arcobacter butzleri RM4018] gi|157699219|gb|ABV67379.1| hypothetical outer membrane protein [Arcobacter butzleri RM4018] Length = 854 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ +S++ ET + +L + I GH P + A N +LS RA + Sbjct: 748 LFENNSAVIKEETKGKVLSFARYLLDNKEFNTIIEGHASKDPTASAAH-NQKLSEQRAAA 806 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 +L+ +GV RI I G H+ + + NRRID ++ + Sbjct: 807 IKNLLISNGVEASRIQSI-GKGHNEPIADNSTAEGQALNRRIDAILIRK 854 >gi|228018109|gb|ACP52733.1| fibronectin-binding protein [Campylobacter coli] gi|228018111|gb|ACP52734.1| fibronectin-binding protein [Campylobacter coli] gi|228018113|gb|ACP52735.1| fibronectin-binding protein [Campylobacter coli] Length = 223 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 135 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 191 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 192 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 221 >gi|330752332|emb|CBL87286.1| protein with similarity to outer membrane OmpA family protein [uncultured Flavobacteria bacterium] Length = 292 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRG 270 + + G++ + + F +++ LP++I L+++ + +L H + +RG Sbjct: 165 LDSLSINEVEVGMVYQLKE----IFFIPATAQYLPKSIKELERLKQFLLNHEVLKVQVRG 220 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS- 329 H P + LS RA + Q L+ +GV E+R+ + G ++ +++ +S P + Sbjct: 221 HV-NGPAQTKPEFYQELSDARAKAIKQFLVGNGVGEERVDE-KGMSNFQMRYSS-PKTAF 277 Query: 330 ---ANRRIDILV 338 NRR++I++ Sbjct: 278 EAGENRRVEIII 289 >gi|85374663|ref|YP_458725.1| putative outer membrane lipoprotein [Erythrobacter litoralis HTCC2594] gi|84787746|gb|ABC63928.1| putative outer membrane lipoprotein [Erythrobacter litoralis HTCC2594] Length = 242 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++SS+ +L ++ L +I+I GHTD N LS RA + Sbjct: 127 FEESSAALAAGGTELLDEVAAALRPCYGAIIAITGHTDT---SGDEPANIVLSRRRAAAV 183 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + L+ GV E+ + +I+G + DP + ANRRI+ V +Q Sbjct: 184 ERALVARGVPEESL-RINGLGSSQPVQGLDPADPANRRIEFSVVAKQ 229 >gi|284032832|ref|YP_003382763.1| OmpA/MotB domain-containing protein [Kribbella flavida DSM 17836] gi|283812125|gb|ADB33964.1| OmpA/MotB domain protein [Kribbella flavida DSM 17836] Length = 327 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSL 289 ++ +F ++I ++ + ++ +L T + + GHTD + LS Sbjct: 220 SQHKIIFLSGTAIVNEKSRGSVVRVAALLRTCGTARVELAGHTDNL---GDPSTSLPLSQ 276 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA + L++ GV RI G+ ++ NRR++I V Sbjct: 277 RRADAVKATLVRLGVPAGRIIS-RGYGEFEPVASNRTSAGRIANRRVEIRV 326 >gi|148546371|ref|YP_001266473.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148510429|gb|ABQ77289.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 313 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L I + + + + GH+D N LS RA + Sbjct: 179 FPGGGIELDAAAKARLDVILDYMKADPTVNHVELNGHSDN---SGNRLTNRDLSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 +GV E++I+ + ++ + NRR++I ++ Sbjct: 236 VADYFKANGVPEEQIT-VRFHGERYPLAKNNSASNRARNRRVNIELDR 282 >gi|120600257|ref|YP_964831.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|146291813|ref|YP_001182237.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|120560350|gb|ABM26277.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] gi|145563503|gb|ABP74438.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] gi|319425048|gb|ADV53122.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 228 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I I++ N F + VL + V ++ +++ G+TD+ Sbjct: 105 VSVTRNGDNI-ILNMPNEVTFGVDQTELSDGASRVLNSVALVAKEYSKTQLNVLGYTDS- 162 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRI 334 N RLS RA LM G++ R+ SK G A AS + NRR+ Sbjct: 163 --SGSDAYNLRLSQVRASEVANYLMSKGIAASRVKSKGMGKASPIASNASAEGRAQNRRV 220 Query: 335 DILVED 340 +I++ Sbjct: 221 EIVLTP 226 >gi|66047120|ref|YP_236961.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63257827|gb|AAY38923.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 300 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 GV E +I+ + ++ + NRR+++ +E Sbjct: 235 VMDYFKAQGVPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281 >gi|322379332|ref|ZP_08053708.1| flagellar motor protein MotB [Helicobacter suis HS1] gi|321148245|gb|EFX42769.1| flagellar motor protein MotB [Helicobacter suis HS1] Length = 258 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHS 262 S + I +G + E G+++ + ++ +F+ S + +I +++ Sbjct: 98 SQVSITKIGQGAILEQIAQGVVLKL---PSSLLFENSYDDTINATMREYIHRIAKIIHAL 154 Query: 263 TEVISI--RGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I I RG TD +P + RD++ L+ RAY +VL+ G+ ++ + + + Sbjct: 155 PDQIRIDVRGFTDNTPLPSNSRFRDHYALAASRAYKVMKVLLSDGIDPQKL-SFTSYGKN 213 Query: 319 RLKIASDPMNSA--NRRIDIL 337 ++ + N R++I Sbjct: 214 DPIAPNNSLEERLHNNRVEIF 234 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K A W + YADF+++L+A F+ ++ I+ + KA+++ F Sbjct: 2 MAAKKAKPVECPAGERWAVPYADFLSLLLALFIALYAISVVNKSKVKALKKEFLKIFDYA 61 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP + +NS ++ T + Sbjct: 62 PRPDSMQPVITIPPAPGDTQTSMETESSKANENSNRSQVSITKIGQGA 109 >gi|312130253|ref|YP_003997593.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311906799|gb|ADQ17240.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 657 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D + P+ + L K+ ++L + I + HTDA R N RLS RA SA Sbjct: 548 YDLDKADIRPDAAIELDKLVQILKDNPGLKIELGSHTDA---RASEIYNLRLSQRRAESA 604 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---NRRID---ILVEDRQ 342 ++ G+S +R+ G+ L I + + NRR + I + +Q Sbjct: 605 INYIVNKGISRERLEA-RGYGESELIIPNAKTEAEHQQNRRTEFKVIEINSKQ 656 >gi|207725377|ref|YP_002255773.1| outer membrane protein [Ralstonia solanacearum MolK2] gi|207743944|ref|YP_002260336.1| outer membrane protein [Ralstonia solanacearum IPO1609] gi|300704759|ref|YP_003746362.1| outer membrane protein, ompa domain [Ralstonia solanacearum CFBP2957] gi|206590613|emb|CAQ37575.1| outer membrane protein [Ralstonia solanacearum MolK2] gi|206595346|emb|CAQ62273.1| outer membrane protein [Ralstonia solanacearum IPO1609] gi|299072423|emb|CBJ43768.1| putative outer membrane protein, ompA domain [Ralstonia solanacearum CFBP2957] Length = 218 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L + T + I GHTD+ F + ++ RLS+ RA + Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLKNITLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341 L+ G+ +R+ G +LK+ DP + + NRR+++ +V R Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVEVEVVGTR 215 Query: 342 QG 343 Sbjct: 216 SA 217 >gi|327479764|gb|AEA83074.1| outer membrane protein [Pseudomonas stutzeri DSM 4166] Length = 297 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S L I + L I + GH+D S R + N LS RA + Sbjct: 178 FPSSDVALDALGRAKLDIILQYLRADPSVNRIQLDGHSDNSGNRLV---NRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 + L+ +GV E +I+ + +A+ + + NRR+ Sbjct: 235 VQEYLIANGVPEQQIT-VRFHGERYPLVANSSEANRAKNRRVT 276 >gi|256424251|ref|YP_003124904.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256039159|gb|ACU62703.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 613 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 16/124 (12%) Query: 230 DQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 D + + FD + + P VL + + + + + + + HTD+ R N Sbjct: 494 DPDKSGLLDIYFDFNKAAINPAAAQVLDGLVKTIQENPDKSVELSAHTDS---RGNDAFN 550 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDIL 337 LS RA S L+ GV++ RIS G+ +L S+ + NRR + Sbjct: 551 LALSQKRATSVMNYLISKGVAKSRISA-KGYGETKLLNRCGNGVNCSEDEHKLNRRTEFK 609 Query: 338 VEDR 341 + + Sbjct: 610 LVKK 613 >gi|78061495|ref|YP_371403.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77969380|gb|ABB10759.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 169 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T+ G +FD P+ ++++IG L + + + Sbjct: 43 ALKSAGFQETQQGFE---FGSTGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 99 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D + + + LS RA L+ G+ RI+ + G + + Sbjct: 100 GYSDQE---GVDKYDLELSRRRAEVVALELVDVGLDTKRIAIVGKGKSDPVGDNKTPGGR 156 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 157 AQNRRAAIVVSPR 169 >gi|300692122|ref|YP_003753117.1| outer membrane protein, ompA domain [Ralstonia solanacearum PSI07] gi|299079182|emb|CBJ51850.1| putative outer membrane protein, ompA domain [Ralstonia solanacearum PSI07] Length = 218 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L + T + I GHTD+ F + ++ RLS+ RA + Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLKNITLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341 L+ G+ +R+ G +LK+ DP + NRR+++ +V R Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGSRKAQIACQQPNRRVEVEVVGTR 215 Query: 342 QG 343 Sbjct: 216 SA 217 >gi|148264196|ref|YP_001230902.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146397696|gb|ABQ26329.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 520 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 9/113 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 MF+ E L ++ E + I GHTD+ ++ N LS+ RA Sbjct: 410 MFEFGQIELSNEVKKALSEVAEQARTDKTWLYLRIDGHTDS--IGSVGY-NMDLSIKRAI 466 Query: 294 SAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 + L+ K G+ R+ + G +L + + NRR ++L +G Sbjct: 467 AIASYLIIKEGIDPTRVF-VKGMGKSKLIADNSTTDGRRMNRRFEVLFLVPKG 518 >gi|330980557|gb|EGH78660.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 830 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 98/295 (33%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L ++ I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLNTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|127512023|ref|YP_001093220.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126637318|gb|ABO22961.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 367 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S++ + ++K+ + + + I GH AS N N LS RA + Sbjct: 256 FANNSAVVNSASYGQIEKLANYMNQNPRATVLIGGH--ASNVGNPDY-NMDLSERRANAV 312 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 ++L+ G+S+DR+S G+ + I S N ANRRI+ Sbjct: 313 AELLVSKYGISQDRVSA-KGYGITQPLIEGKSAEANKANRRIE 354 >gi|34763974|ref|ZP_00144866.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886249|gb|EAA23533.1| Outer membrane porin F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 172 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 G+ I I+ +FD + + L + + L + + I I G+TD Sbjct: 47 EEGVTIRREGNNLILSMPELILFDFDKYVVKDKIKPSLSTLAKALGENKDIHIKIDGYTD 106 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 F N LS+ RA + L+ G I I G+ + S N Sbjct: 107 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 162 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 163 RRVEFII 169 >gi|330901436|gb|EGH32855.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 830 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 98/295 (33%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L ++ I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLNTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|329900833|ref|ZP_08272601.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium IMCC9480] gi|327549361|gb|EGF33931.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium IMCC9480] Length = 214 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 7/101 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ P+ L + L + I GHTD+ N +LS+ R+ + L Sbjct: 112 KSVLKPDGKAKLDDLASKLQGMNLEVIIAVGHTDSV---GSDAYNQKLSVRRSEAVKAYL 168 Query: 300 MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 + G+ +R+ G + S + NRR++I V Sbjct: 169 VSKGIEANRVY-TEGKGEKQPVADNKSAAGRAKNRRVEIEV 208 >gi|298291600|ref|YP_003693539.1| OmpA/MotB domain protein [Starkeya novella DSM 506] gi|296928111|gb|ADH88920.1| OmpA/MotB domain protein [Starkeya novella DSM 506] Length = 336 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE+ + ++ +L + + I GHTD N LS RA + Sbjct: 229 FDFDKADIKPESEAQIAQLASLLKSNPQLGVLIVGHTDG---HGAFDYNLSLSQRRAQAV 285 Query: 296 YQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDIL 337 L G++ +R + +G ++ + NRR++I+ Sbjct: 286 ANRLTSQHGIAANRTTPAGAGMIAPVASNRTEEGRAKNRRVEIV 329 >gi|119477093|ref|ZP_01617329.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [marine gamma proteobacterium HTCC2143] gi|119449456|gb|EAW30694.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [marine gamma proteobacterium HTCC2143] Length = 363 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS + + E + S I GHTD + A N LS RA + Sbjct: 256 FASDSSAVEGNYTSEISNVAEFMKKFAGATSVIEGHTDDT---GSAIYNETLSQKRANAV 312 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 VL+ G+S +R+S G+ R +D ANRR+ +++ Sbjct: 313 MNVLVNRFGISAERLSA-KGYGEARPIQDNDSVEGRRANRRVVAVIK 358 >gi|330940416|gb|EGH43516.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 830 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 98/295 (33%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L ++ I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLNTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|330807745|ref|YP_004352207.1| outer membrane protein OmpA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375853|gb|AEA67203.1| putative lipoprotein; putative outer membrane protein, OmpA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 263 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 16/254 (6%) Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 P + + N + + + ++ + Sbjct: 9 PALLAACVALAACSHDPNANLEQARTNYNGLQADPAATKVAALETKDAADFLAKADKAYM 68 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 D E + + L + + + E L +R + L ++ + L Sbjct: 69 DKEDEAKVDQLAYLTNQRVEVAKQTIALRNAEAELKNAGDERARALLDARNAQIKQLQDS 128 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 K T G L++ D +F + S + + K+ + L + + + I Sbjct: 129 LNAKQ-----TERGTLVTFGD----VLFATNKSDLRASGMTNVSKLAQFLQENPDRKVII 179 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P 326 G+TD++ N LS RA S L+K GV RI G+ + Sbjct: 180 EGYTDST---GSDSYNQSLSERRASSVQLALVKMGVDPARIV-TQGYGKEFPVADNTSVS 235 Query: 327 MNSANRRIDILVED 340 + NRR+++ + + Sbjct: 236 GRAMNRRVEVTISN 249 >gi|117919117|ref|YP_868309.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117611449|gb|ABK46903.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 230 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I + N F + VL + V ++ +++ G+TD+ Sbjct: 106 VSVTRDGDNIVLN-MPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDS- 163 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N RLS RA LM GV+ R+ G A+ + NRR Sbjct: 164 --SGSDSYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRR 220 Query: 334 IDILVED 340 ++I++ Sbjct: 221 VEIVLTP 227 >gi|332970903|gb|EGK09879.1| outer membrane protein OprF [Psychrobacter sp. 1501(2011)] Length = 315 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 101/303 (33%), Gaps = 22/303 (7%) Query: 46 AFFLVMWIIN------ATDDDTKKAIEQ-YFNPFGKNLMTASKGIFDEQNPPERSSQNKI 98 A +VM I+ + + K + +N G N + Sbjct: 13 AILVVMLAISPSTFAETSTEGLIKNMPNVEWNKLGNKPFQIISTNQILDNKVNLIFIRPL 72 Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK-NSLTRDSEKGKDL 157 D E ++D + + Q + ++ + S K N L + Sbjct: 73 DNDGPETSANIAIDGRFQVSLQPGHFSQVRYCSGNHNISIVPTGMKLNDLNTPYNHQVNF 132 Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 + S++ + P LSK + + + + + + +S +VA N K + Sbjct: 133 AAQQNHYISVDIDNATGQPTLSK---IDEAQAQNILATQTEQTHQISRIVA-NCPKILEP 188 Query: 218 ETTRTGIL-ISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 E ++ + I N +F+ ++ P + + I GHTD+ Sbjct: 189 EIEPEPVVKVEIGKPINLEVLFEFDKAVVQPVLNQRSMAVANFMNKYPNTSTIIEGHTDS 248 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 A N +LS RA + Q L+ K GV+ +R+ GF R + N Sbjct: 249 I---GAANYNMKLSQQRAEAVKQELISKYGVNPNRLI-TQGFGETRPVDTNTTEKGRYNN 304 Query: 332 RRI 334 RR+ Sbjct: 305 RRV 307 >gi|330811620|ref|YP_004356082.1| lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379728|gb|AEA71078.1| Conserved hypothetical protein, putative lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 244 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F S+ L + L + I I G+T Sbjct: 100 NTGVEVQRQGDQIKLI-MPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYT 158 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GVS +S G ++ + Sbjct: 159 DST---GSRQHNMDLSQRRAQSVATYLTSQGVSGANLSA-RGAGPDNPVASNADVNGRAQ 214 Query: 331 NRRIDI 336 NRR+++ Sbjct: 215 NRRVEV 220 >gi|170739237|ref|YP_001767892.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168193511|gb|ACA15458.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 227 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ P+ + +++ +G LA I GHTD + + N LS RA Sbjct: 116 FDYNSAKIGPKALPMVKSLGAALARQELKGNTFLIVGHTDG---KGKDQANQALSERRAQ 172 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + ++++ GV + + G+ +LK A++P NRR+ Sbjct: 173 AVKDYIVQNYGVPATNLVSV-GYGKTQLKDAANPNAPVNRRVT 214 >gi|153949846|ref|YP_001401475.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152961341|gb|ABS48802.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758] Length = 578 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + + A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVDALMNIRAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|270263877|ref|ZP_06192145.1| OmpA/MotB domain-containing protein [Serratia odorifera 4Rx13] gi|270042070|gb|EFA15166.1| OmpA/MotB domain-containing protein [Serratia odorifera 4Rx13] Length = 165 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +++ F+ T G + D +F + PE+ +QK+G L + Sbjct: 40 LLQSQGFKLTDNGWEFGLSD---KVLFGNNIGKLNPESTETVQKMGRALMSVGITKFRLD 96 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMN 328 GHTD N +LSL RA + +L G+ I ++ G + Sbjct: 97 GHTDNY---GEDSYNDQLSLRRANAVADLLASVGIPRANIETRGMGKRDPVADNRTSSGR 153 Query: 329 SANRRIDILVED 340 + NRR+ I+V Sbjct: 154 AENRRVAIVVTP 165 >gi|241666858|ref|YP_002984942.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862315|gb|ACS59980.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 189 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 23/197 (11%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 L G L + ++ + + A+ +++ A L+G Sbjct: 5 RLATMFAAGLLLAPGHPFAQELSGPQVVRTLDRLQGGAPAIDLALLMEEAAASAGKGLAG 64 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 L + + + +++ I F+ S P++ + I + L H Sbjct: 65 LPDWQKLSKL------SQLIVEID-------FENDSIAIEPKSYRTVGMIADAL-HHPNL 110 Query: 265 ---VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRL 320 + GHT ++ A+ N LS RA + + L ++ DR+ I G Sbjct: 111 RRYKFLVVGHTSST---GDAKHNLDLSQKRANAITEALSTTFSIAPDRLFAI-GVGEEWP 166 Query: 321 KIASDPMNSANRRIDIL 337 S+P + NRR+ ++ Sbjct: 167 GDPSNPQAADNRRVQLV 183 >gi|26987823|ref|NP_743248.1| OmpA family outer membrane protein [Pseudomonas putida KT2440] gi|24982522|gb|AAN66712.1|AE016299_8 outer membrane protein, OmpA family [Pseudomonas putida KT2440] Length = 317 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L I + + + + GH+D N LS RA + Sbjct: 183 FPGGGIELDAAAKARLDVILDYMKADPTVNHVELNGHSDN---SGNRLTNRDLSRRRALA 239 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 +GV E++I+ + ++ + NRR++I ++ Sbjct: 240 VADYFKANGVPEEQIT-VRFHGERYPLAKNNSASNRARNRRVNIELDR 286 >gi|187477844|ref|YP_785868.1| outer membrane protein A [Bordetella avium 197N] gi|585615|sp|Q05146|OMPA_BORAV RecName: Full=Outer membrane protein A; Flags: Precursor gi|144052|gb|AAA22979.1| outer membrane protein A [Bordetella avium] gi|115422430|emb|CAJ48955.1| outer membrane protein A [Bordetella avium 197N] Length = 194 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + I G+TD+ A N +LS RA S Sbjct: 88 FFDFDKSTLKPEGRQLLDQVAQQARAIDLETIIAVGNTDS--IGTEAY-NMKLSERRAAS 144 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQ 342 L+ G+ +RI G ++ + NRR++I +V R+ Sbjct: 145 VKAYLVSKGIDPNRIY-TEGKGKLNPIASNKTAEGRARNRRVEIEIVGSRK 194 >gi|320353100|ref|YP_004194439.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121602|gb|ADW17148.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 1326 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +++ E+ L + LAH + + + G+TD+ + N LS RA S Sbjct: 1223 FASGTAVFTQESRKNLDTVAAALAHVPQMRVEVAGYTDS---AGDPKKNLDLSAQRAQSV 1279 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L GV+ +++ G+ + NRR+++ Sbjct: 1280 VDYLQTKGVARAQLTA-KGYGKENPIADNATAAGKQKNRRVEL 1321 >gi|312132093|ref|YP_003999433.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311908639|gb|ADQ19080.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 165 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%) Query: 237 FDKSSSIP--LPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S P+ L L + + + GHTD N LSL+R Sbjct: 60 FQSASLEIIRTPQLEEWLSLAKNYLEENPGERLVLTGHTDNE---GTEESNLNLSLERGN 116 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++L G S + + + G +D NRR+ I + R Sbjct: 117 RVKEILSAEGFSAESLE-VEGKGQSEPIAGNDTPEGMQKNRRVSIRLLKR 165 >gi|17545619|ref|NP_519021.1| signal peptide protein [Ralstonia solanacearum GMI1000] gi|17427912|emb|CAD14602.1| putative outer membrane signal peptide protein [Ralstonia solanacearum GMI1000] gi|299066867|emb|CBJ38062.1| putative outer membrane protein, ompA domain [Ralstonia solanacearum CMR15] Length = 218 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L T + I GHTD+ F + ++ RLS+ RA + Sbjct: 102 LFDFDKAVLKPEGKSKLDDLVSKLKGITLEVVIAVGHTDS--FGSDKYND-RLSVRRAEA 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SA---------NRRIDI-LVEDR 341 L+ G+ +R+ G +LK+ DP + + NRR+++ +V R Sbjct: 159 VKGYLVSKGIEANRVY-TEGKGKRQLKV--DPKSCKGARKAQIACQQPNRRVEVEVVGTR 215 Query: 342 QG 343 Sbjct: 216 SA 217 >gi|189218838|ref|YP_001939479.1| Outer membrane protein or related peptidoglycan-associated (lipo)protein [Methylacidiphilum infernorum V4] gi|189185696|gb|ACD82881.1| Outer membrane protein or related peptidoglycan-associated (lipo)protein [Methylacidiphilum infernorum V4] Length = 342 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 17/112 (15%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S+ P +L ++ E+L + I GHTD N +LS RA++ Sbjct: 233 LFDFDSATIKPNAEPLLFQVLEILKKYNRADVEIGGHTDTF---GDEMYNLQLSEQRAFA 289 Query: 295 AYQVLMK---SGVSEDRISKISGFAHHRLKIASDP-----MNSANRRIDILV 338 Q L G+ +G+ + +P + NRR++I++ Sbjct: 290 VQQWLEAHLPQGMYN---FHATGYGKSHPIV--NPRGSIEEQARNRRVEIVI 336 >gi|54307294|ref|YP_128314.1| putative OmpA family protein [Photobacterium profundum SS9] gi|46911714|emb|CAG18512.1| Putative OmpA family protein [Photobacterium profundum SS9] Length = 241 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + ++ TR G I + N F S + L+ + V Sbjct: 104 VQETKLRQQLESTGISVTRDGDNIVLN-MPNEITFGFDQSDLSSRAVAALKNVALVAKEY 162 Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I++ G TD++ A N RLS RA LM+ GV+ +R+ G Sbjct: 163 DKTLINVYGFTDST---GSASYNQRLSQVRASEVSSNLMRGGVAANRVI-TKGMGEANPI 218 Query: 322 IAS--DPMNSANRRIDILV 338 ++ + + NRR++I++ Sbjct: 219 ASNKTEQGRAENRRVEIVL 237 >gi|292490342|ref|YP_003525781.1| peptidoglycan-associated lipoprotein [Nitrosococcus halophilus Nc4] gi|291578937|gb|ADE13394.1| peptidoglycan-associated lipoprotein [Nitrosococcus halophilus Nc4] Length = 191 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS + +++ G+ LA +V +++ GHTD R N L RA + Sbjct: 88 FEFDSSEIQEDDRPIVEAHGDYLAKHPDVSLTLEGHTDE---RGSREYNLALGERRANAV 144 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 ++++ G SED++ ++ + R + + NRR++IL Sbjct: 145 RRLVLLMGASEDQV-QVVSYGEERPAVDGHDEGAWQLNRRVEIL 187 >gi|289676756|ref|ZP_06497646.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5] gi|330898576|gb|EGH29995.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981564|gb|EGH79667.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 300 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 G+ E +I+ + ++ + NRR+++ +E Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281 >gi|90416365|ref|ZP_01224297.1| OmpA domain protein [marine gamma proteobacterium HTCC2207] gi|90332090|gb|EAS47304.1| OmpA domain protein [marine gamma proteobacterium HTCC2207] Length = 324 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 8/102 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + L L I + + + + GHTD+ R + N LS RA + Sbjct: 215 FEFNKDTVLAVYGDQLDAIAAAMKAQDDIDLVLEGHTDS---RGADQYNMSLSDRRAKAV 271 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 L++ G+ RIS + G+ + + D + NRR+ Sbjct: 272 KAKLVEDYGIPAARISAV-GYGETQPIATNETDEGRARNRRV 312 >gi|123440951|ref|YP_001004940.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087912|emb|CAL10700.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 169 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++ F+ T G + N +FD + +Q IG L + + + Sbjct: 43 ALQEQGFKLTDNGWV---FGLANKVLFDSDVRKLNASGVQTVQNIGRALHNVGINHMRVD 99 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTDA N +LS RA + L G+ I + G + Sbjct: 100 GHTDAI---GEDGYNQQLSFQRASAVADTLAAIGIPRTNIE-VRGRGKLEPVADNRTAKG 155 Query: 328 NSANRRIDILV 338 + NRR+ I+V Sbjct: 156 RAENRRVAIIV 166 >gi|21114987|gb|AAM42970.1| chemotaxis protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 89 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Query: 268 IRGHTDASPFRNIAR---DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322 I G TD P + R DNW LS RA + + L+ GV + + F + Sbjct: 2 ISGFTDDRPVLDSNRRYADNWELSAQRALTVTRALIAEGVPASSVFAAA-FGSQQPVDSN 60 Query: 323 ASDPMNSANRRIDI 336 A + + NRR++I Sbjct: 61 ADETRRAKNRRVEI 74 >gi|229589734|ref|YP_002871853.1| hypothetical protein PFLU2242 [Pseudomonas fluorescens SBW25] gi|229361600|emb|CAY48478.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 295 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + LP++ ++++ ++L ++ ++I G+TD + N LS DRA + Sbjct: 193 FATDQTRILPDSQPQIEQLSQLLKQDASLKLAINGYTDRT---GDPAHNKTLSYDRAKAV 249 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + G+ R+S G A ++ + NRR++++ Sbjct: 250 VAAITAKGIDAARLSAAGFGDADPVADNVTEAGKAQNRRVELV 292 >gi|224536108|ref|ZP_03676647.1| hypothetical protein BACCELL_00973 [Bacteroides cellulosilyticus DSM 14838] gi|224522279|gb|EEF91384.1| hypothetical protein BACCELL_00973 [Bacteroides cellulosilyticus DSM 14838] Length = 667 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 34/138 (24%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 ++ + E+ V L ++ E+L + V I + H D ++ N RLS R Sbjct: 530 ENIFYEFDKADLTSESTVALDELIELLNDNPNVTIELSAHCD---YKGNDDYNLRLSQRR 586 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI------ASDPM------------------ 327 A S + L+K G+ +R++ G+ + K S P Sbjct: 587 AESVVRYLIKGGIDPERLTP-KGYGEQQPKTVTKFTLKSAPFLKEGDVLTEEFIKNLPPE 645 Query: 328 -----NSANRRIDILVED 340 N+ NRR + V Sbjct: 646 QQEICNAINRRTEFKVLR 663 >gi|237742388|ref|ZP_04572869.1| outer membrane porin F [Fusobacterium sp. 4_1_13] gi|256845716|ref|ZP_05551174.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|294785038|ref|ZP_06750326.1| outer membrane porin F [Fusobacterium sp. 3_1_27] gi|229430036|gb|EEO40248.1| outer membrane porin F [Fusobacterium sp. 4_1_13] gi|256719275|gb|EEU32830.1| type VI secretion system OmpA/MotB [Fusobacterium sp. 3_1_36A2] gi|294486752|gb|EFG34114.1| outer membrane porin F [Fusobacterium sp. 3_1_27] Length = 182 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 G+ I I+ +FD + + L + + L + + I I G+TD Sbjct: 57 EEGVTIRREGNNLILSMPELILFDFDKYVVKDKIKPSLSTLAKALGENKDIHIKIDGYTD 116 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 F N LS+ RA + L+ G I I G+ + S N Sbjct: 117 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 172 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 173 RRVEFII 179 >gi|115359182|ref|YP_776320.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|115284470|gb|ABI89986.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] Length = 170 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 44 ALKSAGFQETGQGFE---FGSSGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 100 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D R LS RA L+ G+ R++ I G + + Sbjct: 101 GYSDDEGTVAYDR---ELSRRRAEVVAIELVDVGLDGKRVAVIGKGKSDPVGDNRTPTGR 157 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 158 AQNRRAAIVVSPR 170 >gi|257483657|ref|ZP_05637698.1| OmpA domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012188|gb|EGH92244.1| OmpA domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 830 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|237740757|ref|ZP_04571238.1| outer membrane porin F [Fusobacterium sp. 2_1_31] gi|229422774|gb|EEO37821.1| outer membrane porin F [Fusobacterium sp. 2_1_31] Length = 173 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 13/132 (9%) Query: 216 LFETTRTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + + G+ I I+ +FD L + + L + + I I Sbjct: 43 IIVFDQEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLATLAKALGENKDIHIKI 102 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDP 326 G+TD F N LS+ RA + L+ G I I G+ ++ Sbjct: 103 DGYTD---FIGTEAYNLELSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNKTEA 158 Query: 327 MNSANRRIDILV 338 S NRR++ ++ Sbjct: 159 GRSRNRRVEFII 170 >gi|157960903|ref|YP_001500937.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845903|gb|ABV86402.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 365 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ + ++++ E ++ ++I GH + A N LS RA + Sbjct: 254 FATNSATVQESSYGDIKELAEYMSQHPNAEVTISGHASNT---GKADYNMALSERRAAAV 310 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 ++L+ + GV+ ++S G+ + I +S N ANRRI+ Sbjct: 311 AEILINEYGVASSKVSS-KGYGITQPLIEGSSAEANEANRRIE 352 >gi|325109023|ref|YP_004270091.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305] gi|324969291|gb|ADY60069.1| OmpA/MotB domain protein [Planctomyces brasiliensis DSM 5305] Length = 242 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 11/202 (5%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 SL+ + G+ LE+ + + + + + +Q ++ L Sbjct: 40 SLSEMKQDGEMRAMLDALEERFGSSAD-MVSGVPGKSLQENSFYSTMQSSGRRSEDGLKK 98 Query: 206 LVADN---IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 D+ + K E G ++++ +FD S+ L + VL Sbjct: 99 RSKDSQGTVGKNETAERVNHGNVVTM---GGPALFDPFSATLNESIRENLDILAGVLKTR 155 Query: 263 TEVISIRGHTD--ASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDR-ISKISGFAHH 318 + +I +RGH PF + D + LS RA + L + ++R I +G Sbjct: 156 SNLICVRGHASPEPLPFDSPFADQFALSFARAEAVANYLIEDQKIPQERIIVSAAGDTEP 215 Query: 319 RLKIASDPMNSANRRIDILVED 340 R+ +NRR+D+ + D Sbjct: 216 RMLSRDAEQMGSNRRVDVFLID 237 Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 71/189 (37%), Gaps = 13/189 (6%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD-TKKAIEQYFN---PFG 73 KK+V D+ P + W + Y D M++L+ FF+++ ++ D +A+ Sbjct: 5 KKQVVQDEPPPGVPEWVVTYGDMMSLLLTFFIMLVSLSEMKQDGEMRAMLDALEERFGSS 64 Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 ++++ G ++N + Q+ S D + K S D + + + N+ Sbjct: 65 ADMVSGVPGKSLQENSFYSTMQSSGRRSED-GLKKRSKDSQGTVGKNETAERVNHGNVVT 123 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS--------INKEENYFLPPLSKEKILA 185 + + +L + D+ +S + E F P + + L+ Sbjct: 124 MGGPALFDPFSATLNESIRENLDILAGVLKTRSNLICVRGHASPEPLPFDSPFADQFALS 183 Query: 186 MKRKKRLQD 194 R + + + Sbjct: 184 FARAEAVAN 192 >gi|320326605|gb|EFW82655.1| OmpA domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331074|gb|EFW87046.1| OmpA domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 830 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIMIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|300771553|ref|ZP_07081428.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761542|gb|EFK58363.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 650 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L ++ + + I + HTD+ R AR N +LS +RA +A ++ Sbjct: 549 IREDAKPILNQLVRTMRDNPSLKIELSSHTDS---RATARYNMKLSQNRAQAAVDYIVSR 605 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++ DRI G+ +L S+ + ANRR +I V + Sbjct: 606 GIARDRIVA-KGYGESKLVNKCADGVQCSEAEHQANRRTEIKVLE 649 >gi|213964278|ref|ZP_03392508.1| OmpA family protein [Capnocytophaga sputigena Capno] gi|213953085|gb|EEB64437.1| OmpA family protein [Capnocytophaga sputigena Capno] Length = 949 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 9/104 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S + L + L ++ + GH D R N LS RA + Sbjct: 320 FDFDKSNIRSDAKNTLDGLLNFLCFNQHLNMV-LTGHADD---RGSLDYNQALSERRAQA 375 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + G+ +RI KISG + + + NRR++I Sbjct: 376 VKDFFIAGGLDPNRI-KISGEGEGNPAVKGNTEEAYQKNRRVEI 418 >gi|288940835|ref|YP_003443075.1| OmpA/MotB domain-containing protein [Allochromatium vinosum DSM 180] gi|288896207|gb|ADC62043.1| OmpA/MotB domain protein [Allochromatium vinosum DSM 180] Length = 351 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 21/149 (14%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGI----LISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + LS + + +V + + G+ I++ + FD + E+ L++ Sbjct: 212 VEEVLSQPMRERMVS-IEAKEMAQGLSDAGRIAVHGIQ----FDFDQATIKDESKPQLEQ 266 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI--S 310 I +L + + + I GHTD R N LS RA + L++S G+ +R+ Sbjct: 267 IALMLVENPDLKLYIVGHTDN---RGTLEYNMDLSRRRAEEVVRTLIQSYGILGERLKPM 323 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDIL 337 ++G A A++ + NRR++I+ Sbjct: 324 GVAGLA---PLTSNATEAGRALNRRVEIV 349 >gi|261211744|ref|ZP_05926031.1| outer membrane protein [Vibrio sp. RC341] gi|260839094|gb|EEX65726.1| outer membrane protein [Vibrio sp. RC341] Length = 212 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ AS N LS Sbjct: 87 QQLHILFANDSSAIEPAFLTQIRQMAEFLQGYPSTSIELQGY--ASKVGRADY-NLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ G+ R++ I G+ L+ D ++ NRR+ V +G Sbjct: 144 QRSEAVRDQLIRDGIDPSRVN-IVGYGDSVLEAEGEDDISHARNRRVTATVVGYKG 198 >gi|260220860|emb|CBA28849.1| Outer membrane protein A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 203 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ E L + + + I GHTDA+ N +LS+ R+ + Sbjct: 96 FFDFDKSVLKAEGKAKLDDLVSKVKAINLEVIIAVGHTDAT---GDDSYNQKLSVARSEA 152 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ G+ ++R+ G + + + NRR++I V Sbjct: 153 VKAYLVSKGIEKNRVY-TEGKGEKQPVADNKTKEGRAKNRRVEIEV 197 >gi|33593045|ref|NP_880689.1| putative lipoprotein [Bordetella pertussis Tohama I] gi|33563420|emb|CAE42299.1| putative lipoprotein [Bordetella pertussis Tohama I] gi|332382458|gb|AEE67305.1| putative lipoprotein [Bordetella pertussis CS] Length = 182 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGH 271 +GV + + I+++ +FD + L L+ I E++ +T +++I GH Sbjct: 70 EGVSVRQGKDAVTIAMM---GDVLFDFDKADILAAAEPTLRDIAELIKSPATGIVAIEGH 126 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 TD+ + N LSL RA + Q L GV ++ + G R + Sbjct: 127 TDS---KGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKL-SVRGLGAARPVQPN 175 >gi|85858721|ref|YP_460923.1| peptidoglycan-associated lipopeptide [Syntrophus aciditrophicus SB] gi|85721812|gb|ABC76755.1| peptidoglycan-associated lipopeptide [Syntrophus aciditrophicus SB] Length = 210 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 68/194 (35%), Gaps = 12/194 (6%) Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 ++K +EK+ E P + LA R+K L++ A K L + Sbjct: 26 AKKQVLQEGEAAVEKAAGAEVKPATEPGLTPEELA-AREKALKEQALKEQQERERLAGEK 84 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIR 269 ++D F+ S PE+ +LQK LA HS + I Sbjct: 85 AAAEKAAAEAAARAGEVLVDIN----FEFDQSSLTPESREILQKHAAWLAAHSGYSLVIE 140 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-- 327 GH D N L RA A + L+ G+ RI IS + ++ Sbjct: 141 GHCDDL---GTTEYNLALGERRAAEAMRFLVALGIDRSRIKTIS-YGEEMPLDPAETEEA 196 Query: 328 NSANRRIDILVEDR 341 + NRR +V + Sbjct: 197 RAKNRRAHFVVTPK 210 >gi|83592431|ref|YP_426183.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|83575345|gb|ABC21896.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 161 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + F P+ LQ+ + L +++ GH D R N L R Sbjct: 56 DRVFFGYDQYNLAPDARATLQRQAQWLNQYGNFSLTVEGHADE---RGTREYNLALGERR 112 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S + L+ GVS +R+ ++ + R + + NRR Sbjct: 113 ANSVREFLISQGVSANRL-RVVSYGKERPVCTETAESCYARNRR 155 >gi|307824145|ref|ZP_07654372.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307734929|gb|EFO05779.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 396 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 I+D + FD S P+ L V+ + V I ++GHT ++ N R Sbjct: 288 IVDVK----FDNDKSNIKPQYYRELDNAVTVINQNPGVNIEVQGHTSST---GTVEYNQR 340 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 LS RA + L R G+ + ++ + NRR+ + V Sbjct: 341 LSERRALAVKNYLSSKSAHAGRTLTARGYGLTQPIDTNETEEGRANNRRVQLEVL 395 >gi|150010324|ref|YP_001305067.1| outer membrane protein OmpA family protein [Parabacteroides distasonis ATCC 8503] gi|255012413|ref|ZP_05284539.1| outer membrane protein OmpA family protein [Bacteroides sp. 2_1_7] gi|262382396|ref|ZP_06075533.1| outer membrane protein OmpA [Bacteroides sp. 2_1_33B] gi|149938748|gb|ABR45445.1| outer membrane protein OmpA family protein [Parabacteroides distasonis ATCC 8503] gi|262295274|gb|EEY83205.1| outer membrane protein OmpA [Bacteroides sp. 2_1_33B] Length = 658 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 87/279 (31%), Gaps = 17/279 (6%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + ++ YF G M D + S+ ++ I + D I Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWNVENLGAPINSMADDFGITFA 396 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++++ N + ++T E + +E + + + Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFERPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232 + L+ D+ + ++ G + N E ++ Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516 Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + +D + PE+ L ++ ++L + V I + HTD + + N RL+ Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 RA S L+ G+ R+ G+ K + M Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPKTINKKMA 611 >gi|71738017|ref|YP_272433.1| OmpA domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558570|gb|AAZ37781.1| OmpA domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 830 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVNCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|262173862|ref|ZP_06041539.1| protein F-related protein [Vibrio mimicus MB-451] gi|261891220|gb|EEY37207.1| protein F-related protein [Vibrio mimicus MB-451] Length = 207 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ ++ L ++ + LA + I + GHTD + + N LS RA S Sbjct: 102 FDTGSAKVSVQSKQWLDRMAQFLASESGIDIVLEGHTDNT---GAQKFNDTLSEKRASSV 158 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++ V+++ I G+ H + N NRR+++ Sbjct: 159 KTALVQRQVAQNAIY-TRGYGEHVPACTNKTKNGRACNRRVEV 200 >gi|301308400|ref|ZP_07214354.1| OmpA family protein [Bacteroides sp. 20_3] gi|300833870|gb|EFK64486.1| OmpA family protein [Bacteroides sp. 20_3] Length = 658 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 87/279 (31%), Gaps = 17/279 (6%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + ++ YF G M D + S+ ++ I + D I Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWKVENLGAPINSMADDFGITFA 396 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++++ N + ++T E + +E + + + Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFERPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232 + L+ D+ + ++ G + N E ++ Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516 Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + +D + PE+ L ++ ++L + V I + HTD + + N RL+ Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 RA S L+ G+ R+ G+ K + M Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPKTINKKMA 611 >gi|157374990|ref|YP_001473590.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317364|gb|ABV36462.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3] Length = 297 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%) Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 + + KI E LA+ EV + I +TD+ R+I N ++S +RA S Sbjct: 195 GGAELTRYAKAQIAKIQEYLAYDPEVELVLIDAYTDSYGGRSI---NQKVSEERADSVKN 251 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + +G++++RI + G ++D S NRR+ I + Sbjct: 252 FFLSAGITQERIHTV-GHGERHHVASNDTIDERSRNRRVVIRI 293 >gi|224539344|ref|ZP_03679883.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus DSM 14838] gi|224519039|gb|EEF88144.1| hypothetical protein BACCELL_04249 [Bacteroides cellulosilyticus DSM 14838] Length = 224 Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + L+++ ++L I+I GHTD N ++S DRAY+ Sbjct: 112 LFGFNSSTLSNTSKSSLRELAQILKEDPTTDIAIVGHTDKV---GTYEANMKVSKDRAYT 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-ANRRIDI 336 L GVS + K+ G +++ D M++ NRR+DI Sbjct: 169 VENYLQDCGVSPSQFKKVEGVGYNQ---YDDSMSASQNRRVDI 208 >gi|297560820|ref|YP_003679794.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845268|gb|ADH67288.1| OmpA/MotB domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 477 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 28/283 (9%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 PFG + F+ +P E++ + + E + V E Sbjct: 35 PFGTGALDRQHSAFNLVDPLEQAFYSPVRDESGETTIGSEVVPHW------VMDADYEYQ 88 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL--SKEKILAMKR 188 + + + +E + + + D E + P + + R Sbjct: 89 VHFPPLPEDTERITLVVNGSFGEFTGI-PVIDGEPPAEPPGDSVDPSDINPGDTVAVPLR 147 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + + + + L ++ D TT I +FD + PE Sbjct: 148 EAEMTSEPEDYARDLYSIIED--SSRTRTSTTDE----ETIGLHADVLFDFDEATLTPEA 201 Query: 249 IVVLQKIGEVLAHSTEV----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 VL ++ + + + I + GHTD R N LS RA + VL + G+ Sbjct: 202 EDVLAEVVQETRENADPSRPPIRVVGHTDG---RGSEDYNQDLSERRAQAVLDVLEE-GL 257 Query: 305 SEDRISKISGFAHHRLKI-----ASDPMNSANRRIDILVEDRQ 342 + + G + + + NRR++I + RQ Sbjct: 258 GTEYEYETEGRGAEEPLVEEGGADDEEARATNRRVEISYKIRQ 300 >gi|260429336|ref|ZP_05783313.1| OmpA domain protein [Citreicella sp. SE45] gi|260419959|gb|EEX13212.1| OmpA domain protein [Citreicella sp. SE45] Length = 304 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ T+ L+++ L + + GHTDA N LS RA +A Sbjct: 200 FETGSASLGETTVSSLEELAAFLTADPSRRVLLVGHTDAV---GSLAANTELSRKRAAAA 256 Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 L G+ ++ ++ +G+ + NRRI+ ++ + Sbjct: 257 ESYLRARGIPAGQLGAQGAGYLSPVASNLTPEGREENRRIEAILLPSE 304 >gi|327403146|ref|YP_004343984.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318654|gb|AEA43146.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 249 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 17/105 (16%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGH---TDASPFRNIARDNWRLSLDRA 292 F+ ++++ E+I L+K+ +L ++ + + GH T A LS RA Sbjct: 149 FENANAVVKAESIPNLEKLNRILLEDTSLFVRLNGHVCCTSAQ----------ELSFQRA 198 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 + L+K G+ + RI GF++ +L + + + NRR++ Sbjct: 199 NTVMTYLLKHGIPQSRIYA-EGFSNTQLLVPDNSEENMAINRRVE 242 >gi|322380701|ref|ZP_08054840.1| flagellar motor protein MotB [Helicobacter suis HS5] gi|321146869|gb|EFX41630.1| flagellar motor protein MotB [Helicobacter suis HS5] Length = 258 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 11/141 (7%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHS 262 S + I +G + E G+++ + ++ +F+ S + +I +++ Sbjct: 98 SQVSITKIGQGAILEQIAQGVVLKL---PSSLLFENSYDDTINATMREYIHRIAKIIHAL 154 Query: 263 TEVISI--RGHTDASPFRNIAR--DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + I I RG TD +P + +R D++ L+ RAY +VL+ G+ ++ + + + Sbjct: 155 PDQIRIDVRGFTDNTPLPSNSRFKDHYALAASRAYKVMKVLLSDGIDPQKL-SFTSYGKN 213 Query: 319 RLKIASDPMNSA--NRRIDIL 337 ++ + N R++I Sbjct: 214 DPIAPNNSLEERLHNNRVEIF 234 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + K A W + YADF+++L+A F+ ++ I+ + KA+++ F Sbjct: 2 MAAKKAKPVECPAGERWAVPYADFLSLLLALFIALYAISVVNKSKVKALKKEFLKIFDYA 61 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQY 124 PP + +NS ++ T + Sbjct: 62 PRPDSMQPVITIPPAPGDTQTSMETESSKANENSNRSQVSITKIGQGA 109 >gi|313500575|gb|ADR61941.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 162 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 D +F ++ ++++IG+ L + + + GH D+ A N +LS Sbjct: 52 DLSGKVLFGSDLDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADS---SGKAAYNQQLS 108 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA S + L+ G+ I G + + NRR+ I+V Sbjct: 109 ERRAQSVTKALVGVGMQAQNIQS-RGLGSSQPVADNRTSAGRTENRRVSIVV 159 >gi|325269973|ref|ZP_08136582.1| OmpA family protein [Prevotella multiformis DSM 16608] gi|324987696|gb|EGC19670.1| OmpA family protein [Prevotella multiformis DSM 16608] Length = 697 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 34/138 (24%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + PE+ L ++ ++L + V I + HTD + A N RLS R Sbjct: 529 DNIFYDFDKATLRPESEKALNELVKLLDENPNVTIELSAHTD---YIGSAEYNKRLSQRR 585 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL-----------------------------KI 322 A + L G++ DR++ + G+ R K Sbjct: 586 ADAVVAYLTAHGIARDRLTPV-GYGKERPKKIRKKLTEKYPWLKENDVLTEDFIRKLDKE 644 Query: 323 ASDPMNSANRRIDILVED 340 + N NRR + V Sbjct: 645 KQETANQLNRRTEFTVLR 662 >gi|172064633|ref|YP_001812283.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171998118|gb|ACB69034.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 248 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 15/116 (12%) Query: 233 NTPMFDKSSSIPLPETIVVLQKI-----GEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 +F + PE L + G + ++I G+TDA+ D L Sbjct: 141 GDALFAPGQATLTPEARKSLNALMEQQQGTFFS----RVTIIGYTDAT-GSAALNDV--L 193 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 S RA + L G+ D + ++ G + +++ + NRR++I + + Sbjct: 194 SQRRAQAVASYLRTRGLKYD-VIEVEGRGSAQSVASNETAQGRAKNRRVEIQLVAK 248 >gi|114799688|ref|YP_760523.1| OmpA family protein [Hyphomonas neptunium ATCC 15444] gi|114739862|gb|ABI77987.1| OmpA family protein [Hyphomonas neptunium ATCC 15444] Length = 378 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S I + VL + + + GHTD + N ++ +LSL RA + Sbjct: 274 FAPGSVILNVASGPVLDLAARAASDCPGTLRVEGHTDDT--GNPGYND-QLSLRRAEAVR 330 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 +++ GV DR+ +G+ + +++ + Sbjct: 331 AAMIERGVPPDRLVA-AGYGQNNPVSSNETED 361 >gi|159045641|ref|YP_001534435.1| OmpA domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157913401|gb|ABV94834.1| OmpA domain protein [Dinoroseobacter shibae DFL 12] Length = 617 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 7/114 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283 I I F+ SS E ++ +I +VL + I GHTD Sbjct: 487 RIDAIQAEGKITFEPGSSQIAAEAEAIMDRIAQVLVDCSHVEFEIAGHTDNQ---GREVM 543 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N LS RA + L + + + G+ + ANRRI Sbjct: 544 NLNLSQARADAVLAALSERRILTGNLVA-RGYGEAMPIADNSTAEGREANRRIS 596 >gi|56698451|ref|YP_168825.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680188|gb|AAV96854.1| OmpA domain protein [Ruegeria pomeroyi DSS-3] Length = 637 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRL 287 + + F+ S+ + +I ++L + I+GHTD+ N +L Sbjct: 491 VQANDKIAFEPGSATIAASASGTMDRIADLLQSCGPIRLEIQGHTDSQ---GREEMNQQL 547 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI-LVEDRQG 343 S RA S L V + + G+ + + + ANRRI+ L+ Q Sbjct: 548 SQARAQSVLNELRARRVLTASYAAV-GYGESQPIADNGTEDGREANRRIEFRLIRPEQA 605 >gi|160876689|ref|YP_001556005.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195] gi|160862211|gb|ABX50745.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|315268889|gb|ADT95742.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 485 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL + L + GHTD + N LS RA + Sbjct: 378 LFDYDSERMLPESKPVLDVLASYLKQHPALSFYVVGHTDD---KGERSYNQSLSERRAAA 434 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + +D NRR+++++ + Sbjct: 435 VIKQLSDGFQIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484 >gi|148549735|ref|YP_001269837.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148513793|gb|ABQ80653.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 162 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLS 288 D +F ++ ++++IG+ L + + + GH D+ A N +LS Sbjct: 52 DLSGKVLFGSDLDSLNGQSQAIVERIGKALLGVGIQGVRVDGHADS---SGKAAYNQQLS 108 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 RA S + L+ G+ I G + + NRR+ I+V Sbjct: 109 ERRAQSVTKALVGIGMQAQNIQS-RGLGSSQPVADNRTSAGRTENRRVSIVV 159 >gi|332280324|ref|ZP_08392737.1| OmpA/MotB:SmpA/OmlA [Shigella sp. D9] gi|332102676|gb|EGJ06022.1| OmpA/MotB:SmpA/OmlA [Shigella sp. D9] Length = 245 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 18/128 (14%) Query: 226 ISIIDQRNTPMFD---KSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNI 280 I + +F +S + + L + L I + GHTD Sbjct: 116 IQRYTLNSDTLFAFDKSGTSDMSQQGLADLDHLAMNLNSFEKINGIIVIGHTDRL---GS 172 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSA------N 331 N LS RA + Q L+ G+ ++I+ I G + ++ S N Sbjct: 173 EDYNLTLSRKRAETVRQYLIAKGLPAEKITSI-GMGKSQPVKKCKYNNDRASLIVCLQPN 231 Query: 332 RRIDILVE 339 RR+++ V+ Sbjct: 232 RRVEVEVD 239 >gi|255034413|ref|YP_003085034.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947169|gb|ACT91869.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 248 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 11/139 (7%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEV 265 +N + I + D R T F +S S LPE+ L+ + L ++ Sbjct: 116 PIENSTERAREPVIEQNIPVLEDDIRATLHFPQSESDILPESGYELEILAGYLVRNAGSR 175 Query: 266 ISIRGHTDAS--PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I + GHTD PF+N+ LS DR + L+ + RI + GF Sbjct: 176 IELMGHTDDVGDPFKNLL-----LSFDRVDEVRKYLVSKHIETTRI-RGKGFGSDLPVAP 229 Query: 324 SD--PMNSANRRIDILVED 340 +D NRR++I + Sbjct: 230 NDCEANRRLNRRVEIRIVP 248 >gi|113968724|ref|YP_732517.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113883408|gb|ABI37460.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 202 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ PE +++I L ++I GHT + N LS +RA + Sbjct: 79 LFPNDSAYIAPEYYPQIEEIAMFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 VL + R++ I G+ R + ++ NRR+ Sbjct: 136 VTAVLADRFSIDRSRLTAI-GYGSSRPLVLEHTPDAETRNRRV 177 >gi|332666217|ref|YP_004449005.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335031|gb|AEE52132.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 595 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 10/107 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P V++++ L ++ + + GHTD N LS RA++ Sbjct: 490 FASGSSEFTPSARAVMEQLFNDLVIASNLKVEVHGHTDNI---GDPAANLSLSERRAFAI 546 Query: 296 YQVLM---KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L + E R+ I ++D + NRR++I+ Sbjct: 547 KTWLENKSANNFPEGRV-SIFSHGASNPVASNDTPAGRAKNRRVEII 592 >gi|313203569|ref|YP_004042226.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312442885|gb|ADQ79241.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 231 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + S + L K ++L + I+I GHTD N +LS +RA S Sbjct: 114 LFQTNKSALNTASKDALTKFAKILVANPTMDITIMGHTDNQ---GSLDVNQKLSQERAQS 170 Query: 295 AYQVLMKSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDI 336 L V+ + +I G FA + +ANRR+++ Sbjct: 171 VANFLQTQSVTATQFKEIIGKNFAEPVADNKTAAGRAANRRVEV 214 >gi|120612058|ref|YP_971736.1| OmpA domain-containing protein [Acidovorax citrulli AAC00-1] gi|120590522|gb|ABM33962.1| OmpA domain protein [Acidovorax citrulli AAC00-1] Length = 181 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE ++++ + S + I GHTD R N L RA + Sbjct: 80 FDFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDD---RGGREYNLALGQKRAEAV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + L GV E ++ +S F + + + ++ NRR+++ Sbjct: 137 RRALGLLGVPEAQMEAVS-FGKEKPAVQGNTEDAFSQNRRVEL 178 >gi|330892287|gb|EGH24948.1| OmpA domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 830 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSRQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|255261508|ref|ZP_05340850.1| OmpA family domain protein [Thalassiobium sp. R2A62] gi|255103843|gb|EET46517.1| OmpA family domain protein [Thalassiobium sp. R2A62] Length = 308 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 10/121 (8%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 + + D F SS L + E L+ + I++ GHTD+ Sbjct: 195 RVVLSDLA----FQVGSSNLGDAAFASLDLLAEYLSANPNKTIALVGHTDS---SGPLNG 247 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 N LS RA S L + R + G + + NRR++++V Sbjct: 248 NIALSKRRASSVLDRLTRDYGIPRRQMEAEGMGYLSPLSTNLTQEGRDLNRRVEVIVTST 307 Query: 342 Q 342 + Sbjct: 308 E 308 >gi|254228178|ref|ZP_04921607.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262394011|ref|YP_003285865.1| chemotaxis protein MotB-like protein [Vibrio sp. Ex25] gi|151939251|gb|EDN58080.1| Flagellar motor protein [Vibrio sp. Ex25] gi|262337605|gb|ACY51400.1| chemotaxis protein MotB-related protein [Vibrio sp. Ex25] Length = 244 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 33/187 (17%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-DNIVKGVLFETTRTGILISIIDQ-------RNT 234 L ++ ++ D+ I +A NI+ V E + +++ I D +T Sbjct: 40 ALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDELAKRNVIVEIADNDTVIRIPEST 99 Query: 235 PMFDKS-SSIPLPET-IVVLQKIGEVLAHSTEV---------ISIRGHTDASPFRNIARD 283 F SSIP T ++ IG VL + + + I GHTD+ + Sbjct: 100 LTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQYLDTVFIEGHTDSDSIHYRGKG 159 Query: 284 NWRLSLDRAYSAYQVLMKS-------GVSED----RISKISGFAHHR---LKIASDPMNS 329 NW LS DRA S + V G E+ ++ +SG+A R L+ ++ S Sbjct: 160 NWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHAKLFSVSGYAATRRANLQESNQQEKS 219 Query: 330 ANRRIDI 336 NRRIDI Sbjct: 220 QNRRIDI 226 >gi|256839169|ref|ZP_05544679.1| outer membrane protein OmpA family protein [Parabacteroides sp. D13] gi|256740088|gb|EEU53412.1| outer membrane protein OmpA family protein [Parabacteroides sp. D13] Length = 658 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 17/272 (6%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + ++ YF G M D + S+ ++ I + D I Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWKVENLGAPINSMADDFGITFA 396 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++++ N + ++T E + +E + + + Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFERPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232 + L+ D+ + ++ G + N E ++ Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516 Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + +D + PE+ L ++ ++L + V I + HTD + + N RL+ Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 RA S L+ G+ R+ G+ K Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPK 604 >gi|218262635|ref|ZP_03477017.1| hypothetical protein PRABACTJOHN_02696 [Parabacteroides johnsonii DSM 18315] gi|218223264|gb|EEC95914.1| hypothetical protein PRABACTJOHN_02696 [Parabacteroides johnsonii DSM 18315] Length = 663 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 87/285 (30%), Gaps = 24/285 (8%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + ++ YF G M D S+ ++ I D I Sbjct: 346 PYVRDSVTLYFASDGHPGMGG----LDIFKATLDSTGKWNVENMKAPINSAGDDFGITFA 401 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 K+ N +T E + D + Sbjct: 402 GNKESGFFSSNRNDARGYDHLYSFELPVITIFIE---GIVSDVDENPIEDATVRIVGRDG 458 Query: 179 SKEKILAMKRKKRLQDLAKKI----SSTLSGLVADNIVKGVLFETTRTGILISIIDQR-- 232 EK+LA K K +L + I ++ G + N E ++ Sbjct: 459 LNEKVLAKKDGKYRVELERDIRYVMMASARGYLNQNFELKTGPEEKNETYIVDFFLSPIS 518 Query: 233 -----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 +D + PE+ L ++ ++L + V I + HTD + + N R Sbjct: 519 KPVVIENIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGSEQYNER 575 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 L+ RA S L+ G+++DR+ G+ K + M + N Sbjct: 576 LAQRRAQSVVDYLIAGGIAQDRLEA-KGYGESVPKTINKKM-AKN 618 >gi|319424730|gb|ADV52804.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 480 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + + GHTD + N LS RA + Sbjct: 373 LFDYDSERMLPESKPVLEVLATYLKQNPALSFYVVGHTDD---KGERSYNQSLSERRAAA 429 Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + A+D NRR+++++ + Sbjct: 430 VIKQLNEAFNIPSVQLTA-HGNGEYSPVASNANDTGQRLNRRVELVLRSDK 479 >gi|329849879|ref|ZP_08264725.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19] gi|328841790|gb|EGF91360.1| inner membrane lipoprotein yiaD [Asticcacaulis biprosthecum C19] Length = 268 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 243 IPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 P+ ++++ VL ++I G+TD N LS RA A L Sbjct: 169 ELTPQGERTMREVHRVLKRCPAEVKLTITGYTDNV---GADEVNKSLSAGRAVDAMNALT 225 Query: 301 KSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDILV 338 +G +D+++ + +G A A+ NRR+ + Sbjct: 226 AAGWPDDKVTAVGAGSADPVASNATAAGRKKNRRVVFTL 264 >gi|298484732|ref|ZP_07002834.1| OmpA domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160765|gb|EFI01784.1| OmpA domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 830 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSRQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|228018099|gb|ACP52728.1| fibronectin-binding protein [Campylobacter coli] Length = 224 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 193 AKELEKFGVDKSRIQTV-GYGQDKPRSSNDT 222 >gi|262198303|ref|YP_003269512.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081650|gb|ACY17619.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 170 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287 I+ + F S+ P L+ + L + E + I GH D A N L Sbjct: 59 IEPESRVFFALDSAELTPLAQSELEDVAAWLVDNEERELVIEGHADPQ---GAADYNQEL 115 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 S RA + YQ L+ G+ +R+ + F A + S NRR Sbjct: 116 SEKRAIAVYQFLLDQGIPAERMER-RAFGESE---ADEAPYSINRR 157 >gi|254467376|ref|ZP_05080787.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206688284|gb|EDZ48766.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 634 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 7/108 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSL 289 F+ S+ ++ + +I E+L + I+GHTD+ N LS Sbjct: 493 SDGKITFEPGSATIAADSAGTMDRIAEILGRCGPVRLEIQGHTDSQ---GREAMNQNLSQ 549 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 RA S L V G+ +D ANRRI+ Sbjct: 550 ARAQSVLNELRARRVVTS-TFAAKGYGESTPIAGNDTEEGREANRRIE 596 >gi|146291559|ref|YP_001181983.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|145563249|gb|ABP74184.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 481 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + + GHTD + N LS RA + Sbjct: 374 LFDYDSERMLPESKPVLEVLATYLKQNPALSFYVVGHTDD---KGERSYNQSLSERRAAA 430 Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + A+D NRR+++++ + Sbjct: 431 VIKQLNEAFNIPSVQLTA-HGNGEYSPVASNANDTGQRLNRRVELVLRSDK 480 >gi|237802142|ref|ZP_04590603.1| OmpA domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024999|gb|EGI05055.1| OmpA domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 830 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 96/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP---P 177 + + LS +Q+ + L + K+IN Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTINTNAEPGSNQDYE 658 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +I + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|163738350|ref|ZP_02145765.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] gi|161388271|gb|EDQ12625.1| OmpA/MotB [Phaeobacter gallaeciensis BS107] Length = 169 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S P VLQ L + V++I GH D N L R Sbjct: 59 DRVLFAVDQSTLSPAAQSVLQGQARWLTANPDYVVTIEGHADEQ---GTREYNLALGARR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ +R+ ++ F R +++ + NRR Sbjct: 116 ANAAREYLLSQGVAGNRL-QVVSFGKERPLEICSNEACYTKNRR 158 >gi|163742233|ref|ZP_02149621.1| peptidoglycan-associated lipoprotein [Phaeobacter gallaeciensis 2.10] gi|161384563|gb|EDQ08944.1| peptidoglycan-associated lipoprotein [Phaeobacter gallaeciensis 2.10] Length = 169 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S P VLQ L + V++I GH D N L R Sbjct: 59 DRVLFAVDQSTLSPAAQSVLQGQARWLTANPDYVVTIEGHADEQ---GTREYNLALGARR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ +R+ ++ F R +++ + NRR Sbjct: 116 ANAAREYLLSQGVAGNRL-QVVSFGKERPLEICSNEACYTKNRR 158 >gi|326563483|gb|EGE13746.1| OmpA family protein [Moraxella catarrhalis 103P14B1] gi|326572976|gb|EGE22955.1| OmpA family protein [Moraxella catarrhalis CO72] gi|326573791|gb|EGE23748.1| OmpA family protein [Moraxella catarrhalis 101P30B1] Length = 551 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + D+ K + +N + E + + D + ++ ++ + + V+ Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + + II+ F S+ E +L E L E + I GHTD Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333 N LS RA + + L+ GV+ +R+ ++ + F + A++ NRR Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523 Query: 334 IDILV 338 I+ ++ Sbjct: 524 IEFVL 528 >gi|296113686|ref|YP_003627624.1| OmpA family protein [Moraxella catarrhalis RH4] gi|295921380|gb|ADG61731.1| OmpA family protein [Moraxella catarrhalis RH4] Length = 551 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + D+ K + +N + E + + D + ++ ++ + + V+ Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + + II+ F S+ E +L E L E + I GHTD Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333 N LS RA + + L+ GV+ +R+ ++ + F + A++ NRR Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523 Query: 334 IDILV 338 I+ ++ Sbjct: 524 IEFVL 528 >gi|167033774|ref|YP_001669005.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166860262|gb|ABY98669.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 831 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 21/175 (12%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + +I + R D+ + + + + N + + ++ R+ I I + +F Sbjct: 660 YASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQSLRS---IETITLESDTLF 716 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L ++ + I GH D ++ N ++S RA Sbjct: 717 AFGRADFQSLKNEGQNQLSAIASKLLNTPNIGKVVISGHADQL---GDSQGNLQVSKQRA 773 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + G + + D NRR++I V Sbjct: 774 QTIRTYLVGKGVPAELVVA-QGEGSRKPLVNCDMQQPRAQLIKCLEPNRRVEIEV 827 >gi|157368917|ref|YP_001476906.1| OmpA/MotB domain-containing protein [Serratia proteamaculans 568] gi|157320681|gb|ABV39778.1| OmpA/MotB domain protein [Serratia proteamaculans 568] Length = 165 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +++ F+ T G + D +F + PE+ +QK+G L + Sbjct: 40 LLQSQGFKLTDNGWEFGLSD---KVLFGNNIGKLNPESTDTVQKMGRALMSVGITQFRLD 96 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMN 328 GHTD N +LSL RA + +L G+ I ++ G + Sbjct: 97 GHTDNY---GEDSYNDQLSLRRANAVADLLASVGIPRANIETRGMGKRDPVADNRTSSGR 153 Query: 329 SANRRIDILVED 340 + NRR+ I+V Sbjct: 154 AENRRVAIVVTP 165 >gi|308449675|ref|XP_003088039.1| hypothetical protein CRE_17774 [Caenorhabditis remanei] gi|308250191|gb|EFO94143.1| hypothetical protein CRE_17774 [Caenorhabditis remanei] Length = 216 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 17/150 (11%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + KK+ + G GV G + I+ + FD + S P Sbjct: 77 LDNKEKKLRQQMQGT-------GVEVNRNPDGSVALIM--PGSITFDTNKSTIKPNFYGT 127 Query: 252 LQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K+ + L + VI + G+TD + N LS +RAYS L GV RI Sbjct: 128 LNKVAQTLMEDNKSVILVTGYTDNT---GNDSINIPLSQNRAYSVANYLKGKGV-ASRID 183 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338 G+ + NRR++I + Sbjct: 184 -TQGYGSQNPIADNSTAAGREQNRRVEISI 212 >gi|117918835|ref|YP_868027.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117611167|gb|ABK46621.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 202 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ PE +++I L ++I GHT + N LS +RA + Sbjct: 79 LFPNDSAYIAPEYYPQIEEIAMFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 VL + R++ I G+ R + ++ NRR+ Sbjct: 136 VTAVLADRFSIDRSRLTAI-GYGSSRPLVLEHTPDAETRNRRV 177 >gi|312132146|ref|YP_003999486.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311908692|gb|ADQ19133.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 805 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 15/138 (10%) Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 D + + + G ++ I FD + L K+ ++ + Sbjct: 671 DAAKQQPVIYMFKEGDVVVI----ENIYFDYGKYYIRRDAREGLDKLVSLMREYPNMKVE 726 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---- 323 + HTD+ R+ N LS +RA S + L K G+S RI GF ++L Sbjct: 727 LYSHTDS---RSSKEFNQTLSENRAKSTAEYLFKRGISRSRIVDYKGFGENQLVNGCADG 783 Query: 324 ---SDPMNSANRRIDILV 338 S+ + NRR +I V Sbjct: 784 VKCSEAEHQLNRRTEIKV 801 >gi|326562428|gb|EGE12747.1| OmpA family protein [Moraxella catarrhalis 7169] gi|326562797|gb|EGE13092.1| OmpA family protein [Moraxella catarrhalis 46P47B1] gi|326569136|gb|EGE19198.1| OmpA family protein [Moraxella catarrhalis BC1] gi|326570622|gb|EGE20658.1| OmpA family protein [Moraxella catarrhalis BC7] gi|326574786|gb|EGE24720.1| OmpA family protein [Moraxella catarrhalis O35E] Length = 551 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + D+ K + +N + E + + D + ++ ++ + + V+ Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + + II+ F S+ E +L E L E + I GHTD Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333 N LS RA + + L+ GV+ +R+ ++ + F + A++ NRR Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523 Query: 334 IDILV 338 I+ ++ Sbjct: 524 IEFVL 528 >gi|120599910|ref|YP_964484.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|146292153|ref|YP_001182577.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|120560003|gb|ABM25930.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] gi|145563843|gb|ABP74778.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] gi|319425449|gb|ADV53523.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 366 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + + F S++ ++++ L + E + I GH N LS Sbjct: 248 EDVGSIQFANDSAVVKNVYYKDIERLANYLNKNPEFTVEIAGHASNV---GKPEYNMVLS 304 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 RA + +L++ G+S R++ +G+ + +A D ++ANRRI+ +V Sbjct: 305 DKRADAVANILVEKFGISRSRVTS-NGYGITQPLVAGDSKEAHAANRRIEAIVTT 358 >gi|258405704|ref|YP_003198446.1| peptidoglycan-associated lipoprotein [Desulfohalobium retbaense DSM 5692] gi|257797931|gb|ACV68868.1| peptidoglycan-associated lipoprotein [Desulfohalobium retbaense DSM 5692] Length = 199 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 45/210 (21%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKST--DLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + + + + ++ + G D D+E S+++E +KE A + +K Sbjct: 28 DTQAGEMGGTETTMQDSQDMGPDGTGQDGMDMETSVSEEPKDVDEWEAKESSGAAEEEKA 87 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L +L ++I FD S P+ V Sbjct: 88 LSNLREEI------------------------------------YFDFDSFELKPDARDV 111 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 LQ +L + + I GH D R N L RA +AY+ L+ G+ +R+ Sbjct: 112 LQDKAALLDDNPGYKMIIEGHCDE---RGTQEYNLALGERRARAAYEFLILLGIDANRL- 167 Query: 311 KISGFAHHRLKI--ASDPMNSANRRIDILV 338 +I + R + +++ + NRR + + Sbjct: 168 QIVSYGEERPAVEGSNEAAWAKNRRCEFKI 197 >gi|332293580|ref|YP_004432189.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171666|gb|AEE20921.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 368 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 13/112 (11%) Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + +S+ P ++ ++ +LA + + I HTD+ R + N LS RA S Sbjct: 260 NTNSATLTPAAKSIIDTRLMPLLAQNPGVKLEIASHTDS---RGASSSNQDLSERRAQSV 316 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 L+ GV+ + +GF +LK ++ ++ NRR + + + Sbjct: 317 ANYLISKGVNNS-LLVANGFGERKLKNRCADGVSCTERQHADNRRTEFRLIN 367 >gi|330949998|gb|EGH50258.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 300 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 178 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 G+ E +I+ + ++ + NRR+++ +E Sbjct: 235 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 281 >gi|312887218|ref|ZP_07746822.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311300530|gb|EFQ77595.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 177 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 15/164 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 P K K K + L ++ KK+ K V ++ D + + Sbjct: 22 PACKSKKEIAKPQPPLVEVVKKVPEEKKPEPQVEAPKEVAP-------VVEKPDYNFSNL 74 Query: 237 -FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+I + +L K+ + ++ + G++ A N LS +RA S Sbjct: 75 QFEFDSAILKTSSYPMLDKVARAMKLDASVKFVLNGYSSAE---GTPEHNLLLSEERANS 131 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L+ +GV +++ G+ + NRR++I Sbjct: 132 VKTYLLNAGVDASQLTA-KGYGDSNPITPNTTEEGRVLNRRVEI 174 >gi|256424721|ref|YP_003125374.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256039629|gb|ACU63173.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 677 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ L K+ ++ + + + HTD+ R+ N +LS RA S Sbjct: 569 FDLGKADIRPDVAKELDKLIALMKENANWKVDMSFHTDS---RSDDNYNMKLSQRRATST 625 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + G+ + R++ G+ +L ++ + ANRR + V + Sbjct: 626 LNYFLSKGIDKKRLTA-KGYGETKLINRCANGVNCTEEEHKANRRAEFTVLE 676 >gi|149277299|ref|ZP_01883441.1| OmpA/MotB [Pedobacter sp. BAL39] gi|149232176|gb|EDM37553.1| OmpA/MotB [Pedobacter sp. BAL39] Length = 464 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ +SS+ E+ L K+ VL + +++ G+ + A N +LS DRA S Sbjct: 364 FEFNSSVLKTESYPTLDKLSSVLRENGGKVTLHGYASSE---GTAAYNVKLSKDRANSVK 420 Query: 297 QVLMKSGVSEDRISKIS--GFAHHRLKIASDPMNSA--NRRID 335 L+ SGV+ S + G ++D NRR++ Sbjct: 421 TYLVNSGVNS---SAVVTKGHGEANPIASNDTEEGRIQNRRVE 460 >gi|85716801|ref|ZP_01047768.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85696408|gb|EAQ34299.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 214 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD S+ P T L +G+ L + VI + GHTD + N LS RA Sbjct: 103 FDFDSAAVTPRTEPQLHSLGKALTSDELAGSVIMLGGHTDG---KGSDAYNHNLSERRAE 159 Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L + + + + G+ K ++DP NRR++++ Sbjct: 160 AVKRFLMERYKIPAANLVAV-GYGKEGYKNSADPFAPENRRVEVV 203 >gi|291567193|dbj|BAI89465.1| OmpA/MotB domain protein [Arthrospira platensis NIES-39] Length = 285 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 9/174 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 L A ++RLQ + +++++ S + +R+G + I+ Sbjct: 116 RTAALEIQIGNSRPAETLERRLQIIEQQLTAPSSPEAENIPPPTPRTARSRSGNGL-IMT 174 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + +F+ SS P V+L + L + V+ + GHTD + N LS Sbjct: 175 LPSDILFNPGSSTLRPGANVILDNLIPDLQNYRGAVVRVAGHTDD---SGSRQQNLVLSS 231 Query: 290 DRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLK--IASDPMNSANRRIDILVED 340 +A + Q L + V + ++ G+ R SD NRRI++ + Sbjct: 232 AQAEAIVQYL-SNAVDDQAYHWVAIGYGMTRPALENTSDINRQLNRRIEVAITP 284 >gi|153830883|ref|ZP_01983550.1| putative outer membrane protein [Vibrio cholerae 623-39] gi|148873634|gb|EDL71769.1| putative outer membrane protein [Vibrio cholerae 623-39] Length = 212 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ A N LS Sbjct: 87 QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ GV+ +R++ I G+ L++ D ++ NRR+ V +G Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198 >gi|326316639|ref|YP_004234311.1| peptidoglycan-associated lipoprotein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373475|gb|ADX45744.1| peptidoglycan-associated lipoprotein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 181 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE ++++ + S + I GHTD R N L RA + Sbjct: 80 FDFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDD---RGGREYNLALGQKRAEAV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + L GV + ++ +S F + + + ++ NRR+++ Sbjct: 137 RRALGLLGVPDGQMEAVS-FGKEKPAVQGNTEDAFSQNRRVEL 178 >gi|170728573|ref|YP_001762599.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813920|gb|ACA88504.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 224 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++ TR+G I I++ N F + VL + V + +++ G Sbjct: 96 LQSTGVSVTRSGDNI-ILNMPNEVTFGVDETHLSAGAKRVLNSVALVAKEYDKTRLNVLG 154 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 TD+ N RLS RA L+ V R+ G R ++ Sbjct: 155 FTDS---SGSESYNLRLSKVRAVEVADYLVSQKVEYVRVKS-DGMGEERPIASNATKEGR 210 Query: 329 SANRRIDILV 338 + NRR++I++ Sbjct: 211 AENRRVEIIL 220 >gi|54309669|ref|YP_130689.1| outer membrane protein [Photobacterium profundum SS9] gi|46914107|emb|CAG20887.1| conserved hypothetical outer membrane protein [Photobacterium profundum SS9] Length = 220 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S PE+ VL+ I L +S + +S+ GHTD+ N+ L L RA Sbjct: 118 RVYFAFDSQRLTPESQTVLKAIARKLTNSQQTVSLAGHTDSV---GSQGYNYTLGLQRAK 174 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 S+ Q L+ + V + + + + + ++ + NRR+D++ Sbjct: 175 SSMQYLIDNEVKDTNLKSKT-YGETQPIESNTTSQGRAMNRRVDVV 219 >gi|238794810|ref|ZP_04638412.1| OmpA family protein [Yersinia intermedia ATCC 29909] gi|238725890|gb|EEQ17442.1| OmpA family protein [Yersinia intermedia ATCC 29909] Length = 169 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD P + +QKIG LA+ + + GHTD+ N +LSL+R Sbjct: 62 NKVLFDSDVRELNPSGVQRVQKIGRALANVGIHHMRVDGHTDSI---GEDGYNQQLSLER 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ I + G + + NRR+ ++V Sbjct: 119 ASAVADALATIGIPRANID-VRGRGKLEPVADNHTPKGRAENRRVSMIV 166 >gi|206564091|ref|YP_002234854.1| putative OmpA/MotB family outer membrane protein [Burkholderia cenocepacia J2315] gi|198040131|emb|CAR56114.1| putative OmpA/MotB family outer membrane protein [Burkholderia cenocepacia J2315] Length = 169 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +K F+ T G +FD P+ ++++IG L + + + Sbjct: 43 ALKSAGFQETGQGFE---FGSTGPILFDFDRYNLKPDVRRIVERIGRTLRSAGINGVRVY 99 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN 328 G++D A D LS RA L G+ RI+ + G + + Sbjct: 100 GYSDDE--GTAAYD-LELSRRRAEVVAVELADVGLDAKRIAVVGRGKSDPVGDNKTPVGR 156 Query: 329 SANRRIDILVEDR 341 + NRR I+V R Sbjct: 157 AQNRRAAIVVSPR 169 >gi|326571329|gb|EGE21346.1| OmpA family protein [Moraxella catarrhalis BC8] Length = 551 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E +L E L E + I GHTD N LS RA + Sbjct: 428 FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDTQ---GTHEYNQDLSESRAAAV 484 Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 + L+ GV+ +R+ ++ + F + A++ NRRI+ ++ Sbjct: 485 KEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNRRIEFVL 528 >gi|254507991|ref|ZP_05120119.1| outer membrane protein [Vibrio parahaemolyticus 16] gi|219549099|gb|EED26096.1| outer membrane protein [Vibrio parahaemolyticus 16] Length = 278 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 19/164 (11%) Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++KRL +L ++ S D + +D + F +SS Sbjct: 111 QRKRLNELELQLDYVTSQTKCVPPMDEGAFHQRLAVIDELFNLLNVDNQ----FAFNSSE 166 Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L K +LA + + GH D+ ++A N +L+L+RA + L Sbjct: 167 VNPKYMGHLAKAANMLAEHPSLNLKVTGHADS--VGDVAY-NEKLALERAQQVKRYLSIF 223 Query: 303 GVSEDRI--SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G++ RI + + NRR+ I V D Q Sbjct: 224 GLAPTRIATHSV---GDTLPLHEGNSEGVKLTNRRVSIEVIDTQ 264 >gi|332994178|gb|AEF04233.1| TolC family type I secretion outer membrane protein [Alteromonas sp. SN2] Length = 616 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS PE + L ++ + L + I GH A N RLS RA + Sbjct: 511 FASNSSKISPEYVSSLSQVIDALEKYDNAGVIIHGHAS---LDGDAAYNQRLSERRASAV 567 Query: 296 YQVLMK--SGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 +L++ + + RI+ + G+ R + + N+ NRRI+ Sbjct: 568 AALLIESTNDIDSRRITSV-GYGETRPLVDEESPAANAKNRRIE 610 >gi|289647908|ref|ZP_06479251.1| OmpA/MotB [Pseudomonas syringae pv. aesculi str. 2250] Length = 656 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 24/268 (8%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++N P ++ ID + VD + S + + + +Q++ Sbjct: 394 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 450 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + K + ++ + + ++++L + L+ Sbjct: 451 KARIPDYWYPAIYKQVPHDTGMSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 508 Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261 + + + + I I + +F + L I L + Sbjct: 509 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 568 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH D A+ N ++S RA + L+ G+ + + + G ++ Sbjct: 569 TPNVGKIVITGHADQI---GDAQSNLQVSKQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 624 Query: 320 LKIASDPMNSA---------NRRIDILV 338 + D NRR++I V Sbjct: 625 PLVHCDMQMPRAELIHCLEPNRRVEIEV 652 >gi|329954289|ref|ZP_08295383.1| OmpA family protein [Bacteroides clarus YIT 12056] gi|328527995|gb|EGF54981.1| OmpA family protein [Bacteroides clarus YIT 12056] Length = 224 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + L+ + ++L +T I+I GHTD N ++S +RAY+ Sbjct: 112 LFAFNSSTLSNDAKASLRDLAKILKEDTTTDIAIIGHTDKV---GTYEANMKVSKNRAYA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L GVS + ++ G ++ + NRR+ I Sbjct: 169 VENYLQDCGVSPSQFKQVEGVGYNE--YDESLSAAQNRRVVIF 209 >gi|305665788|ref|YP_003862075.1| OmpA family protein [Maribacter sp. HTCC2170] gi|88710554|gb|EAR02786.1| OmpA family protein [Maribacter sp. HTCC2170] Length = 827 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + L K+ +V+ VI I HTD+ R N LS RA S Sbjct: 718 FDFDKSYIRKDASEELDKLVQVMTEYPTMVIKIESHTDS---RGARVYNKYLSEKRAKST 774 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 ++ G+ +RI G+ RL S+ + NRR + ++ + Sbjct: 775 RAYIISKGIDANRIQSAIGYGEERLINGCDGSVRCSEANHLLNRRSEFIIVE 826 >gi|320015664|gb|ADV99235.1| putative exported protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 578 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|194290119|ref|YP_002006026.1| outer membrane protein, ompa family [Cupriavidus taiwanensis LMG 19424] gi|193223954|emb|CAQ69963.1| putative outer membrane protein, ompA family [Cupriavidus taiwanensis LMG 19424] Length = 177 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +++ F T G + + D +F + + + + +IG L+ E + + Sbjct: 51 VLQQEGFTLTGEGWELGLTD---KVLFGFNEDLIEGDRAANVLRIGRALSGVGIERLRVD 107 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPM 327 GHTD A N LS+ RA + ++L +G + D I + G R + Sbjct: 108 GHTDD---AGSAEYNQSLSVRRAEAVARLLADAGFTRDNIE-VRGLGKSRPVADNRTAAG 163 Query: 328 NSANRRIDILV 338 + NRR+ I+V Sbjct: 164 RAENRRVAIIV 174 >gi|284040044|ref|YP_003389974.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283819337|gb|ADB41175.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 668 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 13/278 (4%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 + FG +KG + + + ++ + K + Sbjct: 396 DDFGLIYTDPTKGFMASNRGGGKGDDDIYFFQEGPSVDSTTIVQTPPANAPKIVRYFIAG 455 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN---KEENYFLPPLSKEKILAM 186 + D G+ + ++T + + + E+ + Sbjct: 456 TVSANETPIVPLDSARVRILDDATGQPIAEATTGQPGTFGKYPLQEGKDYTILAERRGYL 515 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R+++ K I + + V R + + + +D P Sbjct: 516 TRREQFTMQGKSIPAIFLTKAQTDTTFNVALLLDRATLNKTFV--LENIYYDLDKFNIRP 573 Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 + L K+ +L + I + HTD R N RLS +RA SA ++ GV Sbjct: 574 DAAEELDKLVTILKDNPTLKIELSSHTD---VRAPDAYNMRLSQNRAKSAVDYIVSKGVD 630 Query: 306 EDRISKISGFAHHRLKIAS---DPMNSANRRIDILVED 340 R+ G+ +L + + + + NRR + + + Sbjct: 631 ASRMIA-KGYGETQLIVKNAKTEEEHQRNRRTEFKILE 667 >gi|119952965|ref|YP_945174.1| outer membrane protein [Borrelia turicatae 91E135] gi|119861736|gb|AAX17504.1| outer membrane protein [Borrelia turicatae 91E135] Length = 385 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + ++ + + E GI +S+ D F S + + L+ I + Sbjct: 249 IEHEVKEYISTKQIDSINIEKNENGIKLSL-DIE----FYPDSFQIIKKEYNKLKHIANL 303 Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I I GHT + LS RA+S L+K V G+ Sbjct: 304 LEKFKDNNILIEGHTAKFGTEQEMQ---ELSEKRAHSIGNYLLKMKVKNKNQIFFKGWGA 360 Query: 318 HRLKIASD-PMNSANRRIDILVED 340 + K A+ P+ S NRR++I + + Sbjct: 361 KKPKYANSSPLASKNRRVEITILN 384 >gi|90414007|ref|ZP_01221991.1| hypothetical outer membrane protein OmpA [Photobacterium profundum 3TCK] gi|90324929|gb|EAS41450.1| hypothetical outer membrane protein OmpA [Photobacterium profundum 3TCK] Length = 327 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + I LQ I + L + E + + GHTD+ R N LS +RA Sbjct: 218 FAFDSDTLSQQDIDQLQPIAQRLVNFPETELFVIGHTDS---RGAEAYNQNLSEERAAVV 274 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 L G+ + RI + G A+D + NRR+++ Sbjct: 275 AGYLATHFGIEQSRI-QAQGRGELEPVAANDTEDGRAQNRRVEVF 318 >gi|330502362|ref|YP_004379231.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328916648|gb|AEB57479.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 313 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 8/101 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F P L I + + I GH D N LS RA + Sbjct: 183 FPGGGIDLDPMAKAKLDIILDFVKADPTINSFQIDGHADN---SGNRLTNRDLSRRRALA 239 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + L+ G+ ++I+ + ++ + NRR Sbjct: 240 VQEYLVAGGIPVEQITM-RFHGERYPLVPNNNEANRAKNRR 279 >gi|254420406|ref|ZP_05034130.1| OmpA family protein [Brevundimonas sp. BAL3] gi|196186583|gb|EDX81559.1| OmpA family protein [Brevundimonas sp. BAL3] Length = 183 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDN 284 ++ ++ F +S PE L + + L + + I+G+TDA+ + +N Sbjct: 70 QVVLSDDSVKFPTDASALSPEAEQRLAQFAQRLRDENKNVYLEIQGYTDAT--GPVEHNN 127 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 +L RA + + L + GV+ +R+S IS + ++D S NRR+ I+V Sbjct: 128 -QLGEQRAEAVRRFLNRQGVALNRMSTIS-YGPEEPVASNDTPEGRSQNRRVTIVVL 182 >gi|332300756|ref|YP_004442677.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177819|gb|AEE13509.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 147 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 7/113 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNW 285 + N F K + E +VL + + + +HS + + GHT N Sbjct: 39 ELEQNFNDVKFAKGKADLTREAQLVLCDLAKFMESHSGLKLKLEGHTSEE---GDETFNQ 95 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 RLS RA +A L+ GVS +R+ G NRR + +V Sbjct: 96 RLSEARAQAAVDFLISQGVSAERLEA-EGKGSTDPIDPD--SLEVNRRTEFVV 145 >gi|330465991|ref|YP_004403734.1| OmpA/MotB domain-containing protein [Verrucosispora maris AB-18-032] gi|328808962|gb|AEB43134.1| OmpA/MotB domain protein [Verrucosispora maris AB-18-032] Length = 407 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 14/121 (11%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSL 289 + +F S P L +I E + + + GHTD+ R+ A N LS Sbjct: 292 PSAALFATDSDEIGPAGRNRLAEIAEE-NKLPKATHLEVVGHTDS---RDDADYNQDLSE 347 Query: 290 DRAYSAYQVLMKSGVSEDRISKISG------FAHHRLKIA-SDPMNSANRRIDILVEDRQ 342 RA + ++L + GV + ++ G A D NRR++I++ + Sbjct: 348 RRAAAVGRILRELGVPVSK-TRGRGEEVRLCLAERLPGGGWDDACLQRNRRVEIVISKQS 406 Query: 343 G 343 G Sbjct: 407 G 407 >gi|187918041|ref|YP_001883604.1| outer membrane protein [Borrelia hermsii DAH] gi|119860889|gb|AAX16684.1| outer membrane protein [Borrelia hermsii DAH] Length = 385 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 10/144 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + ++ + + E GI +S+ D F S + + L+ I + Sbjct: 249 IENEVKEYISTKQIDSIKIEKNENGIKLSL-DIE----FYPDSFQIIQKEYSKLKHIANL 303 Query: 259 LAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I I GHT + LS RA+S L+K V G+ Sbjct: 304 LEKFKNNNILIEGHTAKFETEQAMQ---ELSEKRAHSIGNYLLKMKVKNKNQIFFKGWGA 360 Query: 318 HRLKIASD-PMNSANRRIDILVED 340 + K AS P+ S NRR++I + + Sbjct: 361 KKPKYASSSPLASKNRRVEITILN 384 >gi|146306467|ref|YP_001186932.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina ymp] gi|145574668|gb|ABP84200.1| OmpA/MotB domain protein [Pseudomonas mendocina ymp] Length = 217 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 LP ++ + ++ ++L + + + GH D+ A N LS RA + + S Sbjct: 85 LLPVSLGPITRVAKLLESDEDMAVVVLGHADS---SGDATRNRELSDQRARAVTSIFRLS 141 Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 G+ ++R+ ++ G + A+D + NRR++IL+ R Sbjct: 142 GLKQNRL-QVMGLGSDMPRAANDSAAGRALNRRVEILLTSR 181 >gi|77460924|ref|YP_350431.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77384927|gb|ABA76440.1| putative OmpA family outer membrane protein [Pseudomonas fluorescens Pf0-1] Length = 237 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F S+ L + L + I I G+T Sbjct: 100 NTGVEVQRQGDQIKLI-MPGNITFATDSANIASSFYQPLNNLANSLKEFNQNQIEIVGYT 158 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L GVS +S G ++ + Sbjct: 159 DST---GSRQHNMDLSQRRAQSVATYLTSQGVSGANLSA-RGAGPDNPIASNGDVNGRAQ 214 Query: 331 NRRIDI 336 NRR+++ Sbjct: 215 NRRVEV 220 >gi|332877756|ref|ZP_08445497.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684336|gb|EGJ57192.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 648 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P+ V L KI EV+ + I IR HTD+ R N +LS RA + Sbjct: 540 FDYNKANIRPDAAVELTKIVEVMREYPKMKIDIRSHTDS---RGADSYNLKLSDRRAKAT 596 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 + ++K G+ R+ G+ RL ++ + NRR + +V Sbjct: 597 LEWIVKQGIDRKRLKA-KGYGETRLVNGCSNGVPCTEEEHQENRRSEFIV 645 >gi|254465277|ref|ZP_05078688.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206686185|gb|EDZ46667.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 172 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F P LQ LA + ++I GH D N L R Sbjct: 62 DRVLFAIDQHTLSPAAQATLQGQARWLAQNGDYAVTIEGHADEQ---GTREYNLGLGAKR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333 A +A + L+ G+S RI +S L+I SD S NRR Sbjct: 119 ANAAREYLISQGISGSRIKVVSYGKERPLEICSDETCYSKNRR 161 >gi|84516634|ref|ZP_01003993.1| OmpA family protein [Loktanella vestfoldensis SKA53] gi|84509670|gb|EAQ06128.1| OmpA family protein [Loktanella vestfoldensis SKA53] Length = 218 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+I L++ + + + GHTD A N L L RA + Sbjct: 75 FEFDSAILDSLAQATLRQQADWIRQFPEVRFKVFGHTD---LVGSAEYNRNLGLRRAQAV 131 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S DR+ + F + I + NRR Sbjct: 132 VGYLSTQGISRDRLEAVVSFGATQPLIPTPEPERRNRR 169 >gi|288801512|ref|ZP_06406964.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331593|gb|EFC70079.1| OmpA family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 674 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 34/138 (24%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + PE+ L ++ ++L + V I + HTD +R N +LS R Sbjct: 505 DNIFYDFDKATLRPESTTSLDELVKLLNENPNVTIELSAHTD---YRGSEEYNKKLSQKR 561 Query: 292 AYSAYQVLMKSGVSEDRISKISGFA------------HHRLKIASDPM------------ 327 A + L+ G+S +R++ + G+ + D Sbjct: 562 AEAVVNYLIAHGISSERLTPV-GYGKEKPKKIKKKLTEKYPWLKEDSALTESFIQSLDKE 620 Query: 328 -----NSANRRIDILVED 340 N NRR + +V Sbjct: 621 KQEICNQLNRRTEFIVLR 638 >gi|262402315|ref|ZP_06078876.1| outer membrane protein [Vibrio sp. RC586] gi|262351097|gb|EEZ00230.1| outer membrane protein [Vibrio sp. RC586] Length = 212 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ A N LS Sbjct: 87 QQLHILFANDSSAIEPAFLTQIRQMAEFLKTYPSTSIELQGYASKV---GGAEHNLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ G++ +R++ I G+ L+ D ++ NRR+ V +G Sbjct: 144 QRSEAVRDQLLRYGITPNRVN-IVGYGDSVLEADGTDDVSHARNRRVTATVVGYKG 198 >gi|86133957|ref|ZP_01052539.1| OmpA family protein [Polaribacter sp. MED152] gi|85820820|gb|EAQ41967.1| OmpA family protein [Polaribacter sp. MED152] Length = 370 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 20/159 (12%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILI------SIIDQRNTPM-FDKSSSIPLPETIV 250 + + V +I K VL E + G+ S+ID P+ +D SS+ Sbjct: 218 RTEEVVVPAVYRSITKQVLVE--KGGLSSWKAVDCSLIDNTPLPINWDFSSATLNEGAKQ 275 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++ + + I HTD R RDN LS RA + L+ G++ ++ Sbjct: 276 IIDARLLPIVKDGVAVFIESHTD---MRGTKRDNQELSDRRAKAVTDYLISKGINATQLY 332 Query: 311 KISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342 GF RL S+ ++ NRR V +++ Sbjct: 333 A-KGFGETRLLNKCADGVVCSESEHAVNRRTTFRVVNQK 370 >gi|15641629|ref|NP_231261.1| outer membrane protein, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591817|ref|ZP_01679004.1| outer membrane protein, putative [Vibrio cholerae 2740-80] gi|121730010|ref|ZP_01682424.1| outer membrane protein, putative [Vibrio cholerae V52] gi|147673877|ref|YP_001217173.1| putative outer membrane protein [Vibrio cholerae O395] gi|153214683|ref|ZP_01949543.1| outer membrane protein, putative [Vibrio cholerae 1587] gi|153802238|ref|ZP_01956824.1| outer membrane protein, putative [Vibrio cholerae MZO-3] gi|153819367|ref|ZP_01972034.1| outer membrane protein, putative [Vibrio cholerae NCTC 8457] gi|153822202|ref|ZP_01974869.1| outer membrane protein, putative [Vibrio cholerae B33] gi|227081775|ref|YP_002810326.1| putative outer membrane protein [Vibrio cholerae M66-2] gi|229508265|ref|ZP_04397770.1| outer membrane protein [Vibrio cholerae BX 330286] gi|229511496|ref|ZP_04400975.1| outer membrane protein [Vibrio cholerae B33] gi|229518635|ref|ZP_04408078.1| outer membrane protein [Vibrio cholerae RC9] gi|229520779|ref|ZP_04410202.1| outer membrane protein [Vibrio cholerae TM 11079-80] gi|229523717|ref|ZP_04413122.1| outer membrane protein [Vibrio cholerae bv. albensis VL426] gi|229529345|ref|ZP_04418735.1| outer membrane protein [Vibrio cholerae 12129(1)] gi|229607839|ref|YP_002878487.1| outer membrane protein [Vibrio cholerae MJ-1236] gi|254226120|ref|ZP_04919717.1| outer membrane protein, putative [Vibrio cholerae V51] gi|254285433|ref|ZP_04960398.1| outer membrane protein, putative [Vibrio cholerae AM-19226] gi|254848742|ref|ZP_05238092.1| outer membrane protein [Vibrio cholerae MO10] gi|255744948|ref|ZP_05418898.1| outer membrane protein [Vibrio cholera CIRS 101] gi|262161767|ref|ZP_06030785.1| outer membrane protein [Vibrio cholerae INDRE 91/1] gi|262169640|ref|ZP_06037331.1| outer membrane protein [Vibrio cholerae RC27] gi|262189703|ref|ZP_06048070.1| outer membrane protein [Vibrio cholerae CT 5369-93] gi|298498295|ref|ZP_07008102.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656135|gb|AAF94775.1| outer membrane protein, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546319|gb|EAX56596.1| outer membrane protein, putative [Vibrio cholerae 2740-80] gi|121628244|gb|EAX60761.1| outer membrane protein, putative [Vibrio cholerae V52] gi|124115205|gb|EAY34025.1| outer membrane protein, putative [Vibrio cholerae 1587] gi|124122220|gb|EAY40963.1| outer membrane protein, putative [Vibrio cholerae MZO-3] gi|125621355|gb|EAZ49692.1| outer membrane protein, putative [Vibrio cholerae V51] gi|126510081|gb|EAZ72675.1| outer membrane protein, putative [Vibrio cholerae NCTC 8457] gi|126520270|gb|EAZ77493.1| outer membrane protein, putative [Vibrio cholerae B33] gi|146315760|gb|ABQ20299.1| putative outer membrane protein [Vibrio cholerae O395] gi|150424705|gb|EDN16641.1| outer membrane protein, putative [Vibrio cholerae AM-19226] gi|227009663|gb|ACP05875.1| putative outer membrane protein [Vibrio cholerae M66-2] gi|227013531|gb|ACP09741.1| putative outer membrane protein [Vibrio cholerae O395] gi|229333119|gb|EEN98605.1| outer membrane protein [Vibrio cholerae 12129(1)] gi|229337298|gb|EEO02315.1| outer membrane protein [Vibrio cholerae bv. albensis VL426] gi|229342334|gb|EEO07329.1| outer membrane protein [Vibrio cholerae TM 11079-80] gi|229343324|gb|EEO08299.1| outer membrane protein [Vibrio cholerae RC9] gi|229351461|gb|EEO16402.1| outer membrane protein [Vibrio cholerae B33] gi|229355770|gb|EEO20691.1| outer membrane protein [Vibrio cholerae BX 330286] gi|229370494|gb|ACQ60917.1| outer membrane protein [Vibrio cholerae MJ-1236] gi|254844447|gb|EET22861.1| outer membrane protein [Vibrio cholerae MO10] gi|255737419|gb|EET92814.1| outer membrane protein [Vibrio cholera CIRS 101] gi|262021874|gb|EEY40584.1| outer membrane protein [Vibrio cholerae RC27] gi|262028499|gb|EEY47154.1| outer membrane protein [Vibrio cholerae INDRE 91/1] gi|262034416|gb|EEY52789.1| outer membrane protein [Vibrio cholerae CT 5369-93] gi|297542628|gb|EFH78678.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327484234|gb|AEA78641.1| outer membrane protein, putative [Vibrio cholerae LMA3894-4] Length = 212 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ A N LS Sbjct: 87 QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ GV+ +R++ I G+ L++ D ++ NRR+ V +G Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198 >gi|313497453|gb|ADR58819.1| OmpA/MotB domain-containing protein [Pseudomonas putida BIRD-1] Length = 326 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L I + + + + GH+D S R N LS RA + Sbjct: 179 FPGGGIELDAAAKARLDVILDYMKADPTVNHVELNGHSDNSGNRLA---NRDLSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 +GV +++I+ + ++ + NRR++I ++ Sbjct: 236 VADYFKANGVPDEQIT-VRFHGERYPLAKNNSASNRARNRRVNIELDR 282 >gi|42524629|ref|NP_970009.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100] gi|39576839|emb|CAE78068.1| chemotaxis MotB protein [Bdellovibrio bacteriovorus HD100] Length = 318 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Query: 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF 69 E Q I+IKK + + GSWK+ ADFMT LMAFFLVMW++ ++TKKA+ YF Sbjct: 3 EKKQTIVIKKIIVSGGGHH-GGSWKVALADFMTALMAFFLVMWLVG-QSEETKKAVSDYF 60 Query: 70 NPFGK 74 + Sbjct: 61 STPSV 65 >gi|294670501|ref|ZP_06735381.1| hypothetical protein NEIELOOT_02220 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307780|gb|EFE49023.1| hypothetical protein NEIELOOT_02220 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 271 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ P+ I L + L+ + + + GHTD F + N LS RA + Sbjct: 90 LFNFDKDNLRPQAIETLNSLAARLSDANVQAVRVEGHTD---FMGSEQYNQALSERRANA 146 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV +IS + G + Sbjct: 147 VANYLVNQGVPAGKISAV-GLGESQ 170 >gi|261253024|ref|ZP_05945597.1| outer membrane protein [Vibrio orientalis CIP 102891] gi|260936415|gb|EEX92404.1| outer membrane protein [Vibrio orientalis CIP 102891] Length = 279 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 15/189 (7%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG----LVADNIVKGVL 216 LEK L + ++ RL +L ++ S + + Sbjct: 84 QALEKQNRIARELEGGLLLDAANDLVIQRNRLNELELQLDYVTSQSKCLPPTNEHLFQRR 143 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDAS 275 T + +D + F +S+ P+ + L + +L +++ GH D+ Sbjct: 144 LATIDELYNLLNVDNQ----FAFNSTEINPKYMGHLAEASNILKQHPQFHLAVTGHADSV 199 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N L++ RA + L G+S RI + D NRR Sbjct: 200 ---GDVSYNQELAMGRAQQVKRYLTIFGLSPSRI-QTKSVGDTLPLYEGDSDGVRLTNRR 255 Query: 334 IDILVEDRQ 342 + I V D + Sbjct: 256 VSIEVIDTE 264 >gi|163739042|ref|ZP_02146455.1| OmpA family protein [Phaeobacter gallaeciensis BS107] gi|161387847|gb|EDQ12203.1| OmpA family protein [Phaeobacter gallaeciensis BS107] Length = 183 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + L++ + + I GHTD+ R N RLS RA + Sbjct: 85 FFATNRHRISAAGQQRLREFFQTANARS--FIITGHTDS---RASDEYNMRLSQRRANAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 +V G RI + G+ ++ +D + NRR++I+ Sbjct: 140 AKVGQSVG---ARILEARGYGERDPRVPNDSAANMAQNRRVEII 180 >gi|153826170|ref|ZP_01978837.1| outer membrane protein, putative [Vibrio cholerae MZO-2] gi|149740111|gb|EDM54276.1| outer membrane protein, putative [Vibrio cholerae MZO-2] Length = 212 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ A N LS Sbjct: 87 QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ GV+ +R++ I G+ L++ D ++ NRR+ V +G Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198 >gi|325955085|ref|YP_004238745.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323437703|gb|ADX68167.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 474 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 13/107 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + L EV+ + GHTDA N LS RA S Sbjct: 366 FDYDSDKIRQVSYSKLDNAAEVIMKHPNYNFWVEGHTDA---AGPDAYNQNLSERRAASV 422 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 + L+ GV+ ++ I G LK +P N NRR+ Sbjct: 423 VRYLVNKGVNSAQLFPI-GKGESELKHPECNPTTNCPAWKNLENRRV 468 >gi|298529291|ref|ZP_07016694.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510727|gb|EFI34630.1| OmpA/MotB domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 359 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ E +L + + T+ + + GHT N LS RA S Sbjct: 258 FDFDSAAIKDEYAEILNEAARQIQDRTDPHVVVEGHTCNI---GPEDYNMELSQRRADSV 314 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L++ GV ED I R + +D NRR+++ +E Sbjct: 315 ADYLVEQGVDEDAID-TEAHGLTRPEFDNDTREGRQLNRRVEMRLE 359 >gi|165940436|ref|ZP_02228930.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. IP275] gi|165911633|gb|EDR30316.1| PAL/OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. IP275] Length = 307 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 175 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 231 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 232 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 281 >gi|126175870|ref|YP_001052019.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|152999218|ref|YP_001364899.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185] gi|160873831|ref|YP_001553147.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195] gi|217971891|ref|YP_002356642.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223] gi|304411219|ref|ZP_07392834.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307306514|ref|ZP_07586257.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|125999075|gb|ABN63150.1| OmpA/MotB domain protein [Shewanella baltica OS155] gi|151363836|gb|ABS06836.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|160859353|gb|ABX47887.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|217497026|gb|ACK45219.1| OmpA/MotB domain protein [Shewanella baltica OS223] gi|304350412|gb|EFM14815.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306910805|gb|EFN41233.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|315266058|gb|ADT92911.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 230 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR+G I I++ N F + VL + V ++ +++ G+TD+ Sbjct: 106 VSVTRSGDNI-ILNMPNEVTFGVDQTELSDGAKRVLNSVAVVAKEYSKTQLNVLGYTDS- 163 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 N RLS RA LM GV+ R+ G A+ + NRR Sbjct: 164 --SGSDSYNLRLSQVRAGEVGNYLMSKGVASARVKS-KGMGEASPIASNANANGRAQNRR 220 Query: 334 IDILVED 340 ++I++ Sbjct: 221 VEIVLTP 227 >gi|114046457|ref|YP_737007.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113887899|gb|ABI41950.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 485 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + + GHTD + N LS RA + Sbjct: 378 LFDYDSERLLPESKPVLEVLASYLKQNPTLSFYVVGHTDD---KGERSYNQSLSERRAAT 434 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + +D NRR+++++ + Sbjct: 435 VIKQLSDGFKIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484 >gi|126176195|ref|YP_001052344.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|160877206|ref|YP_001556522.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195] gi|304412239|ref|ZP_07393848.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307306983|ref|ZP_07586723.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|125999400|gb|ABN63475.1| OmpA/MotB domain protein [Shewanella baltica OS155] gi|160862728|gb|ABX51262.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|304349505|gb|EFM13914.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306910561|gb|EFN40991.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|315269410|gb|ADT96263.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 202 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ PE ++++ L ++I GHT + N LS DRA + Sbjct: 79 LFPNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQDRANA 135 Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 VL + + R++ I G+ R + ++ NRR+ Sbjct: 136 VTAVLAERFSIDRSRLTAI-GYGSSRPVVLEQTPDAEIRNRRV 177 >gi|189347858|ref|YP_001944387.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245] gi|189342005|gb|ACD91408.1| OmpA/MotB domain protein [Chlorobium limicola DSM 245] Length = 416 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FD + PE+ + I E+L + + G+TD + N RLS DR Sbjct: 309 DRLVFDTGKATLKPESQEQIGNINEILKAFSAVSLKFGGYTDNV---GDPQANLRLSKDR 365 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 A + ++K G+ + R+ G+ A++ NRR+D Sbjct: 366 AEAVMTEIVKLGIDKARLDA-EGYGAEHPVADNATEEGRQKNRRVD 410 >gi|323344506|ref|ZP_08084731.1| OmpA family protein [Prevotella oralis ATCC 33269] gi|323094633|gb|EFZ37209.1| OmpA family protein [Prevotella oralis ATCC 33269] Length = 688 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + PE+ L ++ ++L + V I + H D ++ N RLS R Sbjct: 519 DNIFYDFDKATLRPESTKALDELVKLLNENPNVTIELSAHCD---YKGSDEYNKRLSQQR 575 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + L+ G+++DR++ + G+ + K Sbjct: 576 ANAVVAYLIDKGIAKDRLTPV-GYGKEKPK 604 >gi|167949850|ref|ZP_02536924.1| sodium-type flagellar protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 285 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + +L+++ + L + + I GH D + N +LS RA + Sbjct: 182 FAFNLHDLDASAKALLKELADYLNRDERVKSVRIEGHADDQ---GRRKYNLKLSERRAMA 238 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L++ GV + R+ + R K+ S + NRR+ IL+ Sbjct: 239 VKAYLVEQGVEQARL-ATFHYGESRPKVRSRSQKARAKNRRVAILL 283 >gi|118591643|ref|ZP_01549039.1| hypothetical protein SIAM614_21907 [Stappia aggregata IAM 12614] gi|118435636|gb|EAV42281.1| hypothetical protein SIAM614_21907 [Stappia aggregata IAM 12614] Length = 316 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 29/203 (14%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + + L ++++ ++ L P + + + RL +LA ++ Sbjct: 123 QQQTLPAFRAYQEALGLVDDTELTPAEPAHAMIARLRDRLDELAVVVAQISEEP------ 176 Query: 213 KGVLFETTRTGILISIIDQRNTPM----------FDKSSSIPLPETIVVLQKIGEVL-AH 261 + + TR+G IS F + + + E L Sbjct: 177 QDIKIPVTRSGQSISQYSFSTRGYKRKKTLVPIQFVYDQDVMTKAGKTSFEDVQEALEKQ 236 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + GHTD P + A N +LSL RA + L+ +G S ++ G + Sbjct: 237 GAPDIQVIGHTD--PVGSDAY-NLQLSLKRAEAVRSALLAAGYSGS--IEVLGMGESQPF 291 Query: 322 IASDP----MNSAN---RRIDIL 337 DP N RR++ + Sbjct: 292 QFDDPSLYTEEVRNQAHRRVEFV 314 >gi|319902507|ref|YP_004162235.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108] gi|319417538|gb|ADV44649.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108] Length = 223 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%) Query: 227 SIIDQRNTP----------MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDAS 275 I D P +F +S+ + L+ + ++L ST I+I GHTD Sbjct: 92 QITDSNGLPAVKVSFAAGILFGFNSAALSNDAKASLRDLAQILKDDSTTDIAIIGHTDKV 151 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANRR 333 N ++S +RAYS L GVS + K+ G+A + +D NRR Sbjct: 152 ---GTYEANMKVSKNRAYSVENYLQDCGVSPAQFKKVEGVGYAQYDESKTAD----QNRR 204 Query: 334 IDI 336 +++ Sbjct: 205 VEV 207 >gi|298485733|ref|ZP_07003812.1| Outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159759|gb|EFI00801.1| Outer membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 229 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHT 272 E R G I +I F SS L + L + I I G+T Sbjct: 99 NTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLANSLKQFNQNNIEIVGYT 157 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 D++ + N LS RA S L V + + + G + ++ + Sbjct: 158 DST---GSRQHNMDLSQQRAQSVATYLTSQVVDQSHL-SVRGAGPDQPIASNADVNGRAQ 213 Query: 331 NRRIDILVEDRQG 343 NRR+++ ++ G Sbjct: 214 NRRVEVNLKPIPG 226 >gi|295135723|ref|YP_003586399.1| OmpA/MotB family outer hypothetical protein [Zunongwangia profunda SM-A87] gi|294983738|gb|ADF54203.1| OmpA/MotB family outer membrane protein [Zunongwangia profunda SM-A87] Length = 536 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 94/289 (32%), Gaps = 34/289 (11%) Query: 57 TDDDTKKAIEQYFNPFGKNLMTASKGIF-DEQNPPERSSQNKIDLSIDEHITKNSVDLKI 115 T+ + + F+ L +F P + S + ++I+E T + + Sbjct: 257 TNVEALPFTSEEFSTEHPALSPDGSTLFFASDMPGGQGSFDLYKVAINEDGTYGTPENLG 316 Query: 116 GSTNQKKQYQRL---ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 N + + Q E+NI Y ++ + + + S + Sbjct: 317 PGINTEHREQFPFVSEDNILYFASDGHLGFGNLDVYKSEGNYTEAENLGSSVNSAYDDFA 376 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 + + K+ L R DN+ + + I I Sbjct: 377 FIINEGEKKGFLTSNRS-----------------GNDNLYSFTRTKYVKKTRQIDIP-HE 418 Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N F+ S E VL K+ ++L S I I H DA R N +LS R Sbjct: 419 NRIYFEFDKSKVTEEYQEVLDKVIDILKGSDATEIKIASHADA---RGTEEYNLKLSQRR 475 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333 A + + L+ G+S + I+ G+ + ++ + NRR Sbjct: 476 ADATKEYLVAKGISSENIT-TKGYGESQPVNDCTEERGCTEAEYAKNRR 523 >gi|330447358|ref|ZP_08311007.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491549|dbj|GAA05504.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 200 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 17/147 (11%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 ++ + S + V +N R + I+ F S++ P+ Sbjct: 46 IEAREQCAKSAVGAEVDNNGCSSQSEYIVRRDLHIN---------FANDSAVVEPQYQGQ 96 Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRI 309 + K+ + + ++I GHT N LS RA + L + G+S +RI Sbjct: 97 IAKLADFMKQYPASKVTIEGHTSKV---GRYDYNMVLSQRRAENVATDLEHQFGISANRI 153 Query: 310 SKISGFAHHRLKIA--SDPMNSANRRI 334 I G+ + L ++ N NRRI Sbjct: 154 KAI-GYGYTHLLDTGMTEEANQKNRRI 179 >gi|325287507|ref|YP_004263297.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322961|gb|ADY30426.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 393 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 82/268 (30%), Gaps = 22/268 (8%) Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 G D N + + G K + + Q Sbjct: 138 GLGYTDANNKGRGTYNGVVGFRTWITERIGLDFNSSGKWAMDKGDGATNHLQHAVGVVYQ 197 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + K + EK + + ++ + + ++LA + KK + L Sbjct: 198 FKAEKGLSKKGLEKQAQIEEILKEQQRVADSIAAAKKQEEEARLLAERLKKEQEALRLAE 257 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + + G SI F +SS T L I E+L Sbjct: 258 VEKEKAAAEKQRREDLQAKINSFG---SIN-------FALNSSYLDSRTKKTLNSIAELL 307 Query: 260 AHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 + + + +TD+ + W LS R + L+ GVS ++++ + F Sbjct: 308 QENPTVTVKLGAYTDSR--GTDKYNLW-LSQRRMQRSLDFLVSKGVSSEKVNA-TAFGEE 363 Query: 319 RLKIA-------SDPMNSANRRIDILVE 339 L ++ + NRRI+I V+ Sbjct: 364 ELLNNCEDGVYCTEQEHKINRRIEITVD 391 >gi|302381967|ref|YP_003817790.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192595|gb|ADL00167.1| OmpA/MotB domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 200 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 9/152 (5%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVL 252 D + + + G + + + G + ++ ++ F PE L Sbjct: 53 DATDQRVAQVEGTAGQALERANAAQVLAEGKFMYEVVLSDDSVKFPSDRDALSPEAEQRL 112 Query: 253 QKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 ++ + L + + I+GHTDA N L RA + + L + G++ +R++ Sbjct: 113 AELAQRLKAENKNVYLEIQGHTDA---AGPESYNDALGEARAEAVRRSLSRQGIALNRMA 169 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340 IS + + + NRR+ I+V Sbjct: 170 TIS-YGEEAPVADNATPEGRAQNRRVAIVVLS 200 >gi|222824332|ref|YP_002575906.1| flagellar motor component MotB [Campylobacter lari RM2100] gi|222539553|gb|ACM64654.1| flagellar motor component MotB [Campylobacter lari RM2100] Length = 244 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 30/210 (14%) Query: 134 LSNSQQSEHCKNSLTRDSE--KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 SN ++E K + E L K +++ + N + L K K L++ +++ Sbjct: 39 ESNPAKTEALKTEFVKIFEFTASNPLEKESEVHNKYSAPSNANVEELEKLKKLSITQQEN 98 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIV 250 ++ L + + +V + F ++S + Sbjct: 99 IEKLKAALDQRENNIVLN---------------------LPARVEFARASVEINSADVQD 137 Query: 251 VLQKIGEVLAHSTEVISIR--GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L++I EVL + I G+TDAS + N+ L+ RA L+ G++ + Sbjct: 138 FLKRISEVLKRMPKQAQIELRGYTDAS--DKDPKRNFDLASKRAQVVADYLIARGINPAQ 195 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILV 338 + +S F + A + + N R++ + Sbjct: 196 LIVVS-FGENYPLSA-NKEDEINNRVEFYI 223 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 83/208 (39%), Gaps = 7/208 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ ++ +A++ F Sbjct: 1 MGKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISESNPAKTEALKTEF--VKIFE 57 Query: 77 MTASKGIFDEQNPPER-SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLS 135 TAS + E + S+ + ++ E + K S+ + K + ENNI Sbjct: 58 FTASNPLEKESEVHNKYSAPSNANVEELEKLKKLSITQQENIEKLKAALDQRENNIVLNL 117 Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 ++ + ++ L + +++ K + K+ L + + K KR DL Sbjct: 118 PARVEFARASVEINSADVQDFLKRISEVLKRMPKQAQIELRGYTD---ASDKDPKRNFDL 174 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTG 223 A K + ++ + + G Sbjct: 175 ASKRAQVVADYLIARGINPAQLIVVSFG 202 >gi|124007657|ref|ZP_01692361.1| outer membrane protein OmpA family, putative [Microscilla marina ATCC 23134] gi|123986955|gb|EAY26720.1| outer membrane protein OmpA family, putative [Microscilla marina ATCC 23134] Length = 632 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+I ++ V LQ + +++ H + + + HTDA N LS RA + Sbjct: 534 FAYKSTILDAQSRVYLQTVYKLMQHHPDLHLRVEAHTDA---SGTWTSNLLLSEQRAKAV 590 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L G+ +I + GF R AS + NRR+ + Sbjct: 591 KAFLTDLGIPSGQIV-VKGFGEARPLGAS---AAKNRRVAL 627 >gi|294783516|ref|ZP_06748840.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA] gi|294480394|gb|EFG28171.1| outer membrane protein OprF [Fusobacterium sp. 1_1_41FAA] Length = 102 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S+ P+ +L + + + + ++I GHTD+ + N LS RA + L+ Sbjct: 3 KSVVKPQYFEMLNNLKDFIEQNNYELTIEGHTDSV---GSNQYNIGLSRRRAEAVKAKLI 59 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 + G+ EDRI I ++ NRR++ + R Sbjct: 60 EFGLPEDRIVGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 102 >gi|260596996|ref|YP_003209567.1| hypothetical protein CTU_12040 [Cronobacter turicensis z3032] gi|260216173|emb|CBA29013.1| hypothetical protein CTU_12040 [Cronobacter turicensis z3032] Length = 465 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 6/109 (5%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S+ P + LQ + ++ I GH+D + N +LS+ RA Sbjct: 348 SLFSSGSARLRPHSPTALQPLLMLVNQHPGRRFLIIGHSDNT---GSPEVNRQLSVSRAI 404 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 + + L+K+ ++ G ++D NRR++ + Sbjct: 405 AVREWLVKTTRRSATQFEVYGSGASDPVASNDSEMGRELNRRVEAIALP 453 >gi|124008177|ref|ZP_01692874.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123986276|gb|EAY26098.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 515 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 18/257 (7%) Query: 81 KGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS 140 +F P ++ + N + NQ K ++ ++ Sbjct: 263 GSMFWYNYAPFSGFIKPGNVGVGLWYELNGAAIVSVEMNQPKYSVAFSYDLSMDRQAK-- 320 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + S + K + ++ + + P + I + KR + + + + Sbjct: 321 ---RLSAFELKVGFRIGKKEVKRKPKPDEIKQDTIRPKDDKFIYTVVVTKRNRRIIGRDT 377 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + DN+ T + I ++T F ++ T +L I +L Sbjct: 378 IATDPIKVDNVPPK---NLTTRDLEI----LKSTAYFYYTNDDINKATESLLNDIVVILK 430 Query: 261 HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 ++ + + GHT N LS RA + + L+ G+ E+R+ + G+ R Sbjct: 431 KHPDIYLELEGHTCN--IGETEDANQNLSERRASAVKKYLVNKGIDENRLKTV-GYGSKR 487 Query: 320 LKIASDPM--NSANRRI 334 ++ NRR+ Sbjct: 488 PVASNKTEFGKIRNRRV 504 >gi|91784930|ref|YP_560136.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans LB400] gi|91688884|gb|ABE32084.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 212 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 23/172 (13%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 + K D ++ TL + + G++ R+ +++ D +F++ S Sbjct: 41 QQELANAKASKGDSVARMMQTLGAKLGNGEASGLMT-LDRSTNRLTLRD----GVFERGS 95 Query: 242 SIPLPETIVVLQ----KIGEVLAHSTE-VISIRGHTDASPFR----------NIARDNWR 286 + PE + ++ +A + + + + G+TD P + DN+ Sbjct: 96 ACLTPEARAAIGAVQGELAHFIADNPKARMLVEGYTDNLPVTRPVIDYQRFCTVYDDNFT 155 Query: 287 LSLDRAYSAYQVLMK--SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 LS RA A + L+ S + RI ++G+ R D + NRR+++ Sbjct: 156 LSAARAREARRALLGTISDDAAKRIV-VAGYGESRPLPGVDAADPRNRRVEV 206 >gi|300716120|ref|YP_003740923.1| outer membrane protein A [Erwinia billingiae Eb661] gi|299061956|emb|CAX59072.1| Outer membrane protein A [Erwinia billingiae Eb661] Length = 357 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 25/133 (18%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L+ + + G+TD + N +LS Sbjct: 229 KSDVLFTFNKASLKPEGQQALDQLYTQLSSLDPKDGSVVVLGYTD--RIGSDQY-NQKLS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI- 336 RA S L+ G+ ++IS G + D + N RR++I Sbjct: 286 EKRAQSVVDYLVSKGIPSNKISA-RGMGESNPVTGNTCDSVKGRNALIDCLAPDRRVEIE 344 Query: 337 ------LVEDRQG 343 +V QG Sbjct: 345 VKGIKDVVTQPQG 357 >gi|212636483|ref|YP_002313008.1| OmpA protein [Shewanella piezotolerans WP3] gi|212557967|gb|ACJ30421.1| OmpA [Shewanella piezotolerans WP3] Length = 364 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+I + ++ + E ++ + I GH + A N LS RA + Sbjct: 253 FATNSAIVQESSYSDIKDLAEYMSKHPNSEVVIAGHASNT---GAADYNMALSERRAIAV 309 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 VL+ + G++ R+S G+ + I +S N ANRRI+ Sbjct: 310 ADVLINEYGIAPARVSS-KGYGITQPLIEGSSKEANQANRRIE 351 >gi|289625247|ref|ZP_06458201.1| OmpA/MotB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870468|gb|EGH05177.1| OmpA/MotB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 647 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 24/268 (8%) Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 ++N P ++ ID + VD + S + + + +Q++ Sbjct: 385 QRNAPTLTTVTGIDSVEPRAL---PVDNRAQSVATFGKTTLDTYLMLSKAQREQADPAVL 441 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 + K + ++ + + ++++L + L+ Sbjct: 442 KARIPDYWYPAIYKQVPHDTGMSAQAAGEVDDYQFAGRQIAFYSDQIREL--DVPRILNN 499 Query: 206 LVADNIVKGVLFETTRTGIL-ISIIDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAH 261 + + + + I I + +F + L I L + Sbjct: 500 AFLISSSRNYINSLLSQSLRAIETITLESDTLFAFGRADFQSLELAGQRQLSAIAGKLLN 559 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + I I GH D A+ N ++S RA + L+ G+ + + + G ++ Sbjct: 560 TPNVGKIVITGHADQI---GDAQSNLQVSKQRAQTIKTYLVGKGLPSELVDAV-GEGSNK 615 Query: 320 LKIASDPMNSA---------NRRIDILV 338 + D NRR++I V Sbjct: 616 PLVHCDMQMPRAELIHCLEPNRRVEIEV 643 >gi|71907621|ref|YP_285208.1| OmpA/MotB [Dechloromonas aromatica RCB] gi|71847242|gb|AAZ46738.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 195 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +I E+ L I + +A + + + GHTD N +LSL RA Sbjct: 94 FEAGGNILTQESKAALVNIRKEIAERAASEVMVIGHTDRV---GSVEGNDKLSLQRAEGL 150 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 +L++SG+S +++ + G + + NRR++I Sbjct: 151 RDLLIESGISAEKMEAV-GRGERDPLVPTADEVDEPKNRRVEI 192 >gi|28898409|ref|NP_798014.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|260895070|ref|ZP_05903566.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|260900920|ref|ZP_05909315.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|308094379|ref|ZP_05888926.2| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|28806626|dbj|BAC59898.1| putative outer membrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086027|gb|EFO35722.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308093578|gb|EFO43273.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308110719|gb|EFO48259.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] Length = 206 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ + L I ++G+ + ++ N LS RA Sbjct: 81 RVLFANDSDEINPVFRRQIRELSDFLKDYPTTSIELQGYASKT---GGSKHNQDLSERRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G+ +R+ +I GF L ++ NRR+ V +G Sbjct: 138 KNVRDALLSYGIEPNRV-RIIGFGDTHLAEQGTDQVSHALNRRVTASVVGYKG 189 >gi|153838882|ref|ZP_01991549.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] gi|149747673|gb|EDM58587.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] Length = 206 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ E L I ++G+ + ++ N LS RA Sbjct: 81 RVLFANDSDEINPVFRRQIRELSEFLKDYPTTSIELQGYASKT---GGSKHNQDLSERRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G+ +R+ +I GF L ++ NRR+ V +G Sbjct: 138 KNVRDALLGYGIEPNRV-RIIGFGDTHLAEQGTDQVSHALNRRVTASVVGYKG 189 >gi|42527651|ref|NP_972749.1| OmpA family protein [Treponema denticola ATCC 35405] gi|41818479|gb|AAS12668.1| OmpA family protein [Treponema denticola ATCC 35405] Length = 449 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 12/142 (8%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + L+ + KG+ + + I + D R F LPE + + I E L Sbjct: 315 IELLLEKHKEKGIELSNPKNIVKIIMYDIR----FVADMPDVLPEEMGKIDVIAEALLKL 370 Query: 263 T--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I GHT N D LS+ RA + K G+ RI +G+ R Sbjct: 371 GPYTKFLIEGHTADL---NRPEDEKILSVQRAERIADEISKRGIDRSRIM-TAGYGSTRP 426 Query: 321 KIASD--PMNSANRRIDILVED 340 S+ + NRR++I V Sbjct: 427 VAPSNNETNMAKNRRVEITVIR 448 >gi|325269448|ref|ZP_08136065.1| immunogenic lipoprotein PG3 [Prevotella multiformis DSM 16608] gi|324988369|gb|EGC20335.1| immunogenic lipoprotein PG3 [Prevotella multiformis DSM 16608] Length = 225 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 6/141 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ A + + + T G+ + + +F + S L K + Sbjct: 74 MDKVAREAAQALPNARVDKVTDANGLQCVKVTFDSGILFPLNGSNLNVSAKNDLTKFAGL 133 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + ++ ++I+G+TDA N LS RA S L GV+ +I + GF Sbjct: 134 MKRNSNCDVAIQGYTDA---SGNDNINIPLSQRRAESVSSYLKGQGVTGRQIRSVQGFGS 190 Query: 318 HRLKIASDPMNSANRRIDILV 338 I + ++ ANRR+++ + Sbjct: 191 ANP-IENKTVSQANRRVEVYL 210 >gi|254428955|ref|ZP_05042662.1| Thrombospondin type 3 repeat family [Alcanivorax sp. DG881] gi|196195124|gb|EDX90083.1| Thrombospondin type 3 repeat family [Alcanivorax sp. DG881] Length = 384 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 90/290 (31%), Gaps = 36/290 (12%) Query: 64 AIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 AI ++F G + GI + E +S + D + + Sbjct: 100 AIRKHF--AGNSAFEPYVGIGAGEFRTEPNSDSSNDFKETIGTLETGFQTMLHPH---FL 154 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + + L + + +E ++ + +P + Sbjct: 155 LDVGARPYYSFRTERWDAEVYAGLNFIIGGSSEKEEPAPVENVVSDSDGDGVPDERDQCA 214 Query: 184 LAMKRKK------RLQDLAKKISSTLS--------GLVADNIVKGVLFETTRTGILISII 229 + L D I +++ LV D + L + + + + Sbjct: 215 NTPAGAQVDATGCELDDDNDSIVNSMDECPNTPAGALVDDKGCQKYLDKDVKETLYVE-- 272 Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 F + + L+ + E + + + GHTD++ A N +LS Sbjct: 273 -------FGHDKAEVRQTSYPSLENLAEGMRQYPSANLVLEGHTDST---GSAAYNKKLS 322 Query: 289 LDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRID 335 RA + VL+ VS DRI+ + G+ + + + NRR++ Sbjct: 323 QQRADAVKTVLVDHYNVSADRITTV-GYGEEKPIADNKTSEGRAENRRVE 371 >gi|313675340|ref|YP_004053336.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312942038|gb|ADR21228.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 745 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 12/111 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + L KI EV+ + + VI + HTDA R N RLS RA ++ Sbjct: 637 FDLGKSEIRKDAAKELDKIVEVMKANPKMVIELGSHTDA---RGSDAFNLRLSDKRAKAS 693 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 ++ G+ EDRIS G+ +L S+ + NRR + V Sbjct: 694 AAYIVSQGIDEDRISG-KGYGETQLINDCGNGVNCSEEEHQLNRRTEFKVL 743 >gi|282859313|ref|ZP_06268425.1| OmpA family protein [Prevotella bivia JCVIHMP010] gi|282587893|gb|EFB93086.1| OmpA family protein [Prevotella bivia JCVIHMP010] Length = 226 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 6/139 (4%) Query: 200 SSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ VA + + + T G+ + + +F +S + L + +V Sbjct: 74 MDKVAREVASRVPNASVEKVTDANGLQCVKVTFDSGILFPLNSYTLSSASKKDLYEFAKV 133 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 + + + ++I+G+TDA N LS +RA + L +GVS +I + G Sbjct: 134 MKANADCDVAIQGYTDA---SGSDNINLPLSQNRANAVSSCLRSNGVSGRQIRSVEGLGS 190 Query: 318 HRLKIASDPMNSANRRIDI 336 I + ++ NRR+++ Sbjct: 191 ANP-IENARVSQKNRRVEV 208 >gi|89069954|ref|ZP_01157287.1| OmpA domain protein [Oceanicola granulosus HTCC2516] gi|89044508|gb|EAR50636.1| OmpA domain protein [Oceanicola granulosus HTCC2516] Length = 298 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ P + L + LA + + + GHTD+ N LS RA Sbjct: 193 FETGSARLGPGSFASLDALARYLAAAPARRVVLVGHTDSQ---GSLAGNISLSRRRADQV 249 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 L+ G +++ G+ + ANRR++ ++ + Sbjct: 250 RTRLIAEHGTDPAQLTADGVGYLAPVASNLTPEGREANRRVEAVLVSTE 298 >gi|120436189|ref|YP_861875.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578339|emb|CAL66808.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 620 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 27/273 (9%) Query: 79 ASKGIFDEQNPPERSSQN----KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 A G+FD E ++ ++D+ D K G + ++ + +F Sbjct: 348 AGLGLFDIFRMTEEDGIENLGEPVNSNMDDFAYFQVSDSKEGYISTNREGGSDDIFVFNK 407 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 N + S + D K KE + + R K+ Sbjct: 408 LNPLILKGQVTDAVNGSPIAAATVRLMDENK---KEIAFLETDEEGNYETEIARDKKFPV 464 Query: 195 LAKKIS--------STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 AK+I ST+ + ++ + + + + + + FD S P Sbjct: 465 EAKEIEYETFEGEISTMDSDEKEEMIYDIELSPVKD---VEYLAEIDNIYFDFDKSNIRP 521 Query: 247 ETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 + L K+ ++ VI I HTD R N +L+ RA S Y L+ G+ Sbjct: 522 DAATELDKLVALMKDEYPELVIEIGSHTDR---RGTNSYNEKLAERRAKSTYDYLVSKGI 578 Query: 305 SEDRISKISGFAHHRLKIA----SDPMNSANRR 333 SEDRI + G+ + I S+ + NRR Sbjct: 579 SEDRIVEFKGYGETKPAIDCDRCSEKDHQLNRR 611 >gi|108763487|ref|YP_633317.1| OmpA family protein [Myxococcus xanthus DK 1622] gi|108467367|gb|ABF92552.1| OmpA family protein [Myxococcus xanthus DK 1622] Length = 171 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 ++ + K V + G ++N F ++ L+K+ Sbjct: 28 LTKAAGDAGKSAVEKRVNTKLMDEG-------RQNQCSFKTGTAQLDAGCEAKLKKLTNA 80 Query: 259 LAHS----------TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L + + + GHTD++ A N +LS RA + + L+ G+ Sbjct: 81 LVDAKKQLVAAGVKSYKFEVSGHTDST---GDAAKNKKLSEQRAETIVKELIARGIPRGE 137 Query: 309 ISKISGFAHHRLKIASDPMN---SANRRIDILV 338 I + G+ + + D + NRR ++ V Sbjct: 138 IIAV-GYGSEKPLVKPDDTAAKKAKNRRYELQV 169 >gi|51597552|ref|YP_071743.1| PAL/OmpA family membrane protein [Yersinia pseudotuberculosis IP 32953] gi|186896682|ref|YP_001873794.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51590834|emb|CAH22486.1| Putative PAL/OmpA-family membrane protein [Yersinia pseudotuberculosis IP 32953] gi|186699708|gb|ACC90337.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 578 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|203287626|ref|YP_002222641.1| outer membrane protein [Borrelia recurrentis A1] gi|201084846|gb|ACH94420.1| outer membrane protein [Borrelia recurrentis A1] Length = 385 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + + E + GI +S+ D F S + + L+ I + Sbjct: 249 IENEIKEYIKREQIDSIEIEKNKNGIKLSL-DIE----FYPDSFQIIRKEHNKLKHIANL 303 Query: 259 LAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I I GHT + LS RA++ L+K V G+ Sbjct: 304 LEKFQDNNILIEGHTAKFGTEQEMQ---ELSEKRAHTIGNYLLKMKVKNKNQIFFKGWGA 360 Query: 318 HRLK-IASDPMNSANRRIDILVED 340 + K ++S P+ S NRR++I + + Sbjct: 361 KKPKYVSSSPLASKNRRVEITILN 384 >gi|203284088|ref|YP_002221828.1| outer membrane protein [Borrelia duttonii Ly] gi|201083531|gb|ACH93122.1| outer membrane protein [Borrelia duttonii Ly] Length = 385 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + + E + GI +S+ D F S + + L+ I + Sbjct: 249 IENEIKEYIKREQIDSIEIEKNKNGIKLSL-DIE----FYPDSFQIIRKEHNKLKHIANL 303 Query: 259 LAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L I I GHT + LS RA++ L+K V G+ Sbjct: 304 LEKFQDNNILIEGHTAKFGTEQEMQ---ELSEKRAHTIGNYLLKMKVKNKNQIFFKGWGA 360 Query: 318 HRLK-IASDPMNSANRRIDILVED 340 + K ++S P+ S NRR++I + + Sbjct: 361 KKPKYVSSSPLASKNRRVEITILN 384 >gi|110639098|ref|YP_679307.1| peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC 33406] gi|110281779|gb|ABG59965.1| peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC 33406] Length = 673 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 I I GHTD+ + N LS RA + L+ G+S++R+ K G+ R ++D Sbjct: 599 IEISGHTDS---KGSDEYNRVLSRKRAQAVVNWLVSKGISKNRL-KFEGYGESRPLASND 654 Query: 326 ---PMNSANRRIDILVEDR 341 NRR + + + Sbjct: 655 DELEGRELNRRTEFKILKK 673 >gi|22126581|ref|NP_670004.1| hypothetical protein y2702 [Yersinia pestis KIM 10] gi|22127241|ref|NP_670664.1| hypothetical protein y3365 [Yersinia pestis KIM 10] gi|45443207|ref|NP_994746.1| OmpA family membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108806286|ref|YP_650202.1| OmpA family membrane protein [Yersinia pestis Antiqua] gi|108812671|ref|YP_648438.1| OmpA-family membrane protein [Yersinia pestis Nepal516] gi|145597850|ref|YP_001161926.1| OmpA-family membrane protein [Yersinia pestis Pestoides F] gi|149367019|ref|ZP_01889052.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125] gi|218928146|ref|YP_002346021.1| putative OmpA family membrane protein [Yersinia pestis CO92] gi|229840896|ref|ZP_04461055.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842543|ref|ZP_04462698.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229903796|ref|ZP_04518909.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516] gi|270486867|ref|ZP_06203941.1| OmpA family protein [Yersinia pestis KIM D27] gi|270487580|ref|ZP_06204654.1| OmpA family protein [Yersinia pestis KIM D27] gi|294502870|ref|YP_003566932.1| putative OmpA-family membrane protein [Yersinia pestis Z176003] gi|21959587|gb|AAM86255.1|AE013873_3 hypothetical [Yersinia pestis KIM 10] gi|21960312|gb|AAM86915.1|AE013938_3 hypothetical [Yersinia pestis KIM 10] gi|45438075|gb|AAS63623.1| putative OmpA-family membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108776319|gb|ABG18838.1| OmpA-family membrane protein [Yersinia pestis Nepal516] gi|108778199|gb|ABG12257.1| putative OmpA-family membrane protein [Yersinia pestis Antiqua] gi|115346757|emb|CAL19641.1| putative OmpA-family membrane protein [Yersinia pestis CO92] gi|145209546|gb|ABP38953.1| OmpA-family membrane protein [Yersinia pestis Pestoides F] gi|149290633|gb|EDM40709.1| putative OmpA-family membrane protein [Yersinia pestis CA88-4125] gi|229679566|gb|EEO75669.1| putative OmpA-family membrane protein [Yersinia pestis Nepal516] gi|229690853|gb|EEO82907.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697262|gb|EEO87309.1| putative OmpA-family membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361491|gb|ACY58212.1| putative OmpA-family membrane protein [Yersinia pestis D106004] gi|262365418|gb|ACY61975.1| putative OmpA-family membrane protein [Yersinia pestis D182038] gi|270335371|gb|EFA46148.1| OmpA family protein [Yersinia pestis KIM D27] gi|270336084|gb|EFA46861.1| OmpA family protein [Yersinia pestis KIM D27] gi|294353329|gb|ADE63670.1| putative OmpA-family membrane protein [Yersinia pestis Z176003] gi|320013943|gb|ADV97514.1| putative OmpA-family membrane protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 578 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|332665133|ref|YP_004447921.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333947|gb|AEE51048.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 143 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E I L K + + ISI GHTD + W LS R+ + Sbjct: 38 FGGGSHYIDQEQIDALYKWLDGIPEVDSHDISIHGHTDN--IGGAEYNQW-LSQMRSDNT 94 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 Q L+ G+ + + I F + NRR+DI+V Sbjct: 95 LQKLVDKGLRTE-MISIRDFGQFNPLFDNSTWEGRRKNRRVDIIV 138 >gi|332528553|ref|ZP_08404541.1| peptidoglycaN-associated lipoprotein [Hylemonella gracilis ATCC 19624] gi|332042064|gb|EGI78402.1| peptidoglycaN-associated lipoprotein [Hylemonella gracilis ATCC 19624] Length = 189 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 SI D FD SS PE V++ + + ++I GH D R N Sbjct: 78 SIADVAKLVYFDYDSSAIKPEFRAVIEAHARFMQSNPARSVTIAGHADE---RGGTEYNL 134 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 L RA + Q+L+ GV+ +I IS G ++ +++ + NRR +I Sbjct: 135 ALGQRRADAVRQMLVLLGVNSSQIETISFGKEKPAVRGSNEAAWAKNRRAEI 186 >gi|296162992|ref|ZP_06845769.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295886786|gb|EFG66627.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 248 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S++ P L V +++ G+TDA+ N LS RA + Sbjct: 145 FATDSAMLSPIAKKNLDHFMSV-NQGINLHRLTVVGYTDAT---GSEAHNLNLSQARAAA 200 Query: 295 AYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDILV 338 Q L G+ D+ +++ G A A+ NRR+D+ V Sbjct: 201 VVQYLRDGGLHVDQFVARGLGSADPVASNATAEGRMQNRRVDVRV 245 >gi|127512084|ref|YP_001093281.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126637379|gb|ABO23022.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 234 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S+ + L K+ + L+ S +++ GHTD N LS RA Sbjct: 128 RVYFAFASAEVSIDQWPQLAKVRDFLSASDARLTLVGHTDNI---GSEAVNLSLSRQRAE 184 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP-MNSANRRIDILVEDR 341 Q+ ++ GV +R+S ++ A + P + NRR++ +VE R Sbjct: 185 RVKQIFVQDYGVKAERLSIVAKGASQPVTDNFGPGERALNRRVEFIVEAR 234 >gi|59714347|ref|YP_207122.1| outer membrane porin F [Vibrio fischeri ES114] gi|197336792|ref|YP_002158803.1| outer membrane porin F [Vibrio fischeri MJ11] gi|59482595|gb|AAW88234.1| outer membrane porin F [Vibrio fischeri ES114] gi|197314044|gb|ACH63493.1| outer membrane porin F [Vibrio fischeri MJ11] Length = 202 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 226 ISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 + D+++ +F SS P ++ + E L E I ++G AS N Sbjct: 70 VEHSDKKDLKILFANDSSEISPIFKTEIRTMAEFLEEYPETSIQLQGF--ASQQGNAEY- 126 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 N RLS RA + L++ GV RI I GF L D ++ NRR+ Sbjct: 127 NIRLSELRAAAVRVALIEYGVDPQRIETI-GFGDTLLTAKGDSAVSHALNRRV 178 >gi|170720302|ref|YP_001747990.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169758305|gb|ACA71621.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 324 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L I + L I + GH+D N S RA + Sbjct: 179 FPGGGIDLDAAARARLDVILDYLQADPTVNHIELNGHSDN---SGNRLTNRDTSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 L GV E++I+ + ++ + NRR++I ++ Sbjct: 236 VADYLKAHGVPEEQIT-VRFHGERYPLAKNNSAANRARNRRVNIELDR 282 >gi|262341165|ref|YP_003284020.1| OmpA/MotB domain-containing protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272502|gb|ACY40410.1| OmpA/MotB domain-containing protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 413 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 13/105 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD P ++ ++ +I E++ I G+TD+ N LSL RA Sbjct: 318 LFDLGKFALTPRSLSIVNEIAEIIINSLPNSKFYIDGYTDS---HGKLSYNKTLSLKRAN 374 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 S ++ L+ GV RI + G + K RR++I + Sbjct: 375 SVFEALISKGVDSSRIE-VRGLVGGKYKKKG-------RRVEITI 411 >gi|163783062|ref|ZP_02178057.1| hypothetical protein HG1285_00765 [Hydrogenivirga sp. 128-5-R1-1] gi|159881742|gb|EDP75251.1| hypothetical protein HG1285_00765 [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E + +L ++ + L + + I G TD N +L++ RA + Sbjct: 245 FDFDKYSIRREYVPILNEVVKTLKENEFVKVRIEGFTD---IIGPKEYNEKLAMKRAEAV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + L++ G+ ED+I I GF R +++ NRR++ +V Q Sbjct: 302 KRYLVEKGIPEDKID-IVGFGKERFIASNEDKIGRLTNRRVEFIVIKLQ 349 >gi|104780417|ref|YP_606915.1| OmpA/MotB family outer membrane protein [Pseudomonas entomophila L48] gi|95109404|emb|CAK14104.1| putative outer membrane protein, OmpA/MotB family [Pseudomonas entomophila L48] Length = 325 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L + + L I + GH+D N S RA + Sbjct: 179 FPGAGIELDAAGRARLDVVLDYLKADPSVNHIELDGHSDN---SGNRLTNRDTSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 + L GV ED+I+ + ++ + NRR++I ++ Sbjct: 236 VAEYLKAHGVPEDQIT-VRFHGERYPLAKNNSAANRARNRRVNIQLDR 282 >gi|83309701|ref|YP_419965.1| Outer membrane protein and related peptidoglycan-associated protein [Magnetospirillum magneticum AMB-1] gi|82944542|dbj|BAE49406.1| Outer membrane protein and related peptidoglycan-associated protein [Magnetospirillum magneticum AMB-1] Length = 378 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + PE VLQ+ + I + HTD A+ N LS R + Sbjct: 276 FFDFDKAQITPEAARVLQQAAGAAKTAGAARIDLSAHTD---LSGSAKYNQALSEKRGAA 332 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 L + G+ +I ++ G + NRR++I++ Sbjct: 333 VKAQLEQLGIPASQIVVVAKGKTSPMVPTPDGVREPQNRRVEIIL 377 >gi|120597137|ref|YP_961711.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|120557230|gb|ABM23157.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] Length = 481 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + + GHTD + N LS RA + Sbjct: 374 LFDYDSERMLPESKPVLEVLATYLKQNPALSFYVVGHTDD---KGERSYNQSLSERRAAA 430 Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + A+D NRR+++++ + Sbjct: 431 VIKQLNETFNIPSVQLTA-HGNGEYSPVASNANDTGQRLNRRVELVLRSDK 480 >gi|301156596|emb|CBW16067.1| outer membrane protein A (3a;II*;G;d) [Haemophilus parainfluenzae T3T1] Length = 361 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 14/113 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I +A +++ G+TD N +LS RA S Sbjct: 248 FAFGKANLKPQAKATLDGIYGEIAQINNANVAVAGYTDRI---GKDAPNVKLSQRRADSV 304 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILV 338 L+ GV IS + G A+ D + +RR++I V Sbjct: 305 ANYLVAKGVPAQSISAVGHGKANPVTGSTCDAVKGRKALIACLAPDRRVEIAV 357 >gi|163747526|ref|ZP_02154876.1| OmpA family protein [Oceanibulbus indolifex HEL-45] gi|161379204|gb|EDQ03623.1| OmpA family protein [Oceanibulbus indolifex HEL-45] Length = 191 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ R N RLS +RA S V + G RI+ + G+ + ++ Sbjct: 123 ITGHTDS---RASDAYNMRLSYNRANSVAHVANQVG---ARIADVRGYGERMPAVPNNSA 176 Query: 328 N--SANRRIDIL 337 + NRR++I+ Sbjct: 177 ANMAKNRRVEII 188 >gi|119504265|ref|ZP_01626345.1| peptidoglycan-associated lipoprotein [marine gamma proteobacterium HTCC2080] gi|119459773|gb|EAW40868.1| peptidoglycan-associated lipoprotein [marine gamma proteobacterium HTCC2080] Length = 182 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD SS + + VL + + + + GHTD R N L RA + Sbjct: 84 FDFDSSSMTDTARMAVDAHIAVLLSNDDSVRLEGHTDE---RGTREYNLALGERRANAVR 140 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 ++ +GV RI IS + +S+ S NRR+++ Sbjct: 141 DYMVANGVPSYRIESIS-YGEENPVAFGSSEANWSQNRRVEL 181 >gi|66048188|ref|YP_238029.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63258895|gb|AAY39991.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 830 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + I G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAI-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|262275459|ref|ZP_06053269.1| lipoprotein precursor OmpA family [Grimontia hollisae CIP 101886] gi|262220704|gb|EEY72019.1| lipoprotein precursor OmpA family [Grimontia hollisae CIP 101886] Length = 223 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + P +L I + + S+ ++I GHTD+ N L L RA S Sbjct: 114 FGFDKASLTPTGKKILAGIVDSITTSSTPLTITGHTDSV---GSHAYNLTLGLKRAESVK 170 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 L+ +G + +I +S + ++ + NRR+D++ Sbjct: 171 GYLVDAGKNNAQIKTVSA-GETKPVTTNETAKGRAENRRVDVV 212 >gi|213964024|ref|ZP_03392268.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno] gi|213953356|gb|EEB64694.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno] Length = 635 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ V L KI EV+ + I IR HTD+ R N LS RA S Sbjct: 526 FDLNKSDIRPDAAVELAKIVEVMKEYPKMKIDIRSHTDS---RASDAYNLALSDRRAKST 582 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + ++K G+ R++ G+ RL ++ + ANRR + +V + Sbjct: 583 LEWIVKQGIERKRLTA-KGYGETRLVNGCSNGVPCTEEEHQANRRSEFIVVN 633 >gi|330874387|gb|EGH08536.1| OmpA domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 830 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLTAVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKVEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPSELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|256830739|ref|YP_003159467.1| OmpA/MotB domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579915|gb|ACU91051.1| OmpA/MotB domain protein [Desulfomicrobium baculatum DSM 4028] Length = 295 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 15/165 (9%) Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 +PP + + + RL+DL + L LVA V G G Sbjct: 113 IPPQALAGSILDRLHDRLRDLIAR--DGLQDLVAVQSVPGKSLHVVLAG----------D 160 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+KS ++ + L +GE+L + +S+ GH +R W LS+ A Sbjct: 161 LLFEKSRAVLRGDVKETLLAVGEILRSAPHALSVVGHAAPGGAAAGSRGPWELSVAMAAD 220 Query: 295 AYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L++ +G+ +R+ ++G+ R + D + R+++++ Sbjct: 221 VADFLIRDAGLPAERML-VAGYGDQRPLVDGDGAGAG-WRVELVL 263 >gi|170023051|ref|YP_001719556.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|169749585|gb|ACA67103.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] Length = 578 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|153946939|ref|YP_001399719.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152958434|gb|ABS45895.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758] Length = 578 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|45441186|ref|NP_992725.1| hypothetical protein YP_1360 [Yersinia pestis biovar Microtus str. 91001] gi|51595824|ref|YP_070015.1| OmpA family outer membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108806760|ref|YP_650676.1| hypothetical protein YPA_0763 [Yersinia pestis Antiqua] gi|145598791|ref|YP_001162867.1| hypothetical protein YPDSF_1507 [Yersinia pestis Pestoides F] gi|149366559|ref|ZP_01888593.1| putative exported protein [Yersinia pestis CA88-4125] gi|167467063|ref|ZP_02331767.1| hypothetical protein YpesF_04015 [Yersinia pestis FV-1] gi|218928612|ref|YP_002346487.1| hypothetical protein YPO1469 [Yersinia pestis CO92] gi|229841445|ref|ZP_04461604.1| putative exported protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843557|ref|ZP_04463700.1| putative exported protein [Yersinia pestis biovar Orientalis str. India 195] gi|294503448|ref|YP_003567510.1| hypothetical protein YPZ3_1338 [Yersinia pestis Z176003] gi|45436046|gb|AAS61602.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|51589106|emb|CAH20726.1| OmpA family of outer membrane porins [Yersinia pseudotuberculosis IP 32953] gi|108778673|gb|ABG12731.1| hypothetical protein YPA_0763 [Yersinia pestis Antiqua] gi|115347223|emb|CAL20117.1| putative exported protein [Yersinia pestis CO92] gi|145210487|gb|ABP39894.1| hypothetical protein YPDSF_1507 [Yersinia pestis Pestoides F] gi|149290933|gb|EDM41008.1| putative exported protein [Yersinia pestis CA88-4125] gi|229689165|gb|EEO81228.1| putative exported protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697811|gb|EEO87858.1| putative exported protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|262364848|gb|ACY61405.1| hypothetical protein YPD8_0715 [Yersinia pestis D182038] gi|294353907|gb|ADE64248.1| hypothetical protein YPZ3_1338 [Yersinia pestis Z176003] Length = 578 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 446 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 502 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 503 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 552 >gi|330447990|ref|ZP_08311638.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492181|dbj|GAA06135.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 196 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F SS + + + LA + I ++G+ ASP + A + LS RA + Sbjct: 76 LFANDSSEIPESYMENIANMSAFLAKYPDTHIELKGY--ASPVGSAAYNV-ALSKRRAQA 132 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 Q L+ GVS RI + GF A D N+ +RR+ V QG Sbjct: 133 IRQALITEGVSPARIKTV-GFGDSDPVKADDVEESNALSRRVVAQVVGSQG 182 >gi|213024604|ref|ZP_03339051.1| hypothetical protein Salmonelentericaenterica_19791 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 154 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 L L+A+ I +G+L + + R MF V+ K +A Sbjct: 54 RLKILLANEIARGLLTVDEDDQHSRVVF---RGDAMFVPGQKTVSDAIRPVINKAAREIA 110 Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSG 303 +++ GHTD+ P + N LS RA +L G Sbjct: 111 RVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGG 154 >gi|186894908|ref|YP_001872020.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|186697934|gb|ACC88563.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 581 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 449 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 505 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 506 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 555 >gi|110638113|ref|YP_678322.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110280794|gb|ABG58980.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 631 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 5/109 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N F +S ++I L+K+ + + + + + G+TD A N +LS R Sbjct: 526 NNIFFQTNSYQLEEKSISELKKLINFIQINPAQRVELAGYTDNV---GTAEANLKLSAMR 582 Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339 A + Y L++ G+ I K G A S+ NRR++I + Sbjct: 583 AKAVYDYLIQHGIKPAGITYKGYGAASPVADNNSEEGRQKNRRLEIKIL 631 >gi|229515018|ref|ZP_04404478.1| outer membrane protein [Vibrio cholerae TMA 21] gi|229347723|gb|EEO12682.1| outer membrane protein [Vibrio cholerae TMA 21] Length = 212 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ A N LS Sbjct: 87 QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLVLSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ GV+ +R++ I G+ L++ D ++ NRR+ V +G Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEVEGTDDVSHARNRRVTATVVGYKG 198 >gi|162451840|ref|YP_001614207.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] gi|161162422|emb|CAN93727.1| outer membrane protein [Sorangium cellulosum 'So ce 56'] Length = 628 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 244 PLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 P + VL ++ + + + ++ + ++GHTD + N RLS RA + L+ Sbjct: 527 VDPISDEVLYEVRDTIQQNPDIELVEVQGHTDDN---GTEEYNLRLSQQRADAVLSWLVA 583 Query: 302 SGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 +GV +++ G+ + + NRR+ ++ R+ Sbjct: 584 AGVPREKLVA-KGYGFEQPVGDNRVKTGRQKNRRVQFVIVKRK 625 >gi|323699159|ref|ZP_08111071.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323459091|gb|EGB14956.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 351 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F E + VL++ +L + I GHTD++ N LS RA S Sbjct: 250 FGFDKYQITDEMVPVLEQAKMILEEDTAATYEISGHTDST---GTEAYNQGLSERRANSV 306 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + L +GVS DR+ G+ K + NRR++I Sbjct: 307 MKWLTDNGVSADRLEA-KGYGELAPKYDNATKEGRKLNRRVEI 348 >gi|312131594|ref|YP_003998934.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311908140|gb|ADQ18581.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 765 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 21/193 (10%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L ++++ I+ ++ + E+ ++ +K +K + + S + + + Sbjct: 578 LRSGSEVQIQISDQDGKVIFKRDPERNYELESEK--SGYSKIVENIRSEVRKERKTPQKI 635 Query: 217 FETT--RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 +T + G +I + +D S + L+KIGE+L S E I + HTD Sbjct: 636 HRSTMYKIGDVIRL----ENIYYDNESYKLGAQAKQSLRKIGELLQKSPELAIEVSSHTD 691 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP 326 R A+ N LS RA + L++ +S RIS + G + A +D Sbjct: 692 T---RGSAQANMILSERRAEEVKKFLVQY-ISGHRISAV-GKGESQPVNACGDGVQCTDA 746 Query: 327 MNSANRRIDILVE 339 ++ NRR +I + Sbjct: 747 EHARNRRTEIRIL 759 >gi|209526860|ref|ZP_03275380.1| OmpA/MotB domain protein [Arthrospira maxima CS-328] gi|209492731|gb|EDZ93066.1| OmpA/MotB domain protein [Arthrospira maxima CS-328] Length = 285 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 9/238 (3%) Query: 107 TKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKS 166 T + + L ++ YQ + + + + + + + + Sbjct: 52 TSSEMPLTEQLLRREPAYQPSFPDRETPRLTPPKASPTSLTPEVQQTLQPQLQQLQQDLN 111 Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILI 226 L A ++RLQ + +++++ S + +R+G + Sbjct: 112 ALIGRTAALEIQIGNSRPAETLERRLQIIEQQLTAPSSPEAENIPPPTPRTARSRSGSGL 171 Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 I+ + +F+ SS P V+L + L + V+ + GHTD S R N Sbjct: 172 -IMTLPSDILFNPGSSTLRPGANVILDNLIPDLQNYRGAVVRVAGHTDDSARRQQ---NL 227 Query: 286 RLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 LS +A + Q L + I G+ R SD NRRI++ + Sbjct: 228 VLSSAQAEAVVQYLSNAVDYQAYHWVAI-GYGMTRPALENTSDINRQLNRRIEVAITP 284 >gi|256820527|ref|YP_003141806.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582110|gb|ACU93245.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 660 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 19/201 (9%) Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 SL E+ + + + N ++ + +E + ++ L L + L Sbjct: 468 SLKLIEEQISNKEGTFSFLYTSNCKDEQLIIKTIREGFSSDEQNITLTGLKDAYAEVLLS 527 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE- 264 + + + + ++ + I + FD + P+ L KI +V+ Sbjct: 528 PIVEKKPIKIGDDLSKE-LKI------DNIYFDYDKANIRPDAAEQLAKIVKVMEEYPTM 580 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA- 323 I +R HTD+ R N LS RA S + L+ G+ +DRI+ G+ +L Sbjct: 581 KIDVRLHTDS---RGSDSYNLALSQRRAKSTIKWLIAHGIHKDRITG-KGYGETQLVNGC 636 Query: 324 ------SDPMNSANRRIDILV 338 ++ + ANRR + ++ Sbjct: 637 SNGVPCTEEQHQANRRSEFII 657 >gi|325475131|gb|EGC78317.1| OmpA family protein [Treponema denticola F0402] Length = 391 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 12/142 (8%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + L+ + KG+ + + I + D R F LPE + + I E L Sbjct: 257 IELLLEKHKEKGIELSNPKNIVKIIMYDIR----FVADMPDVLPEEMGKIDVIAEALLKL 312 Query: 263 T--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I GHT N D LS+ RA + K G+ RI +G+ R Sbjct: 313 GPYTKFLIEGHTADL---NRPEDEKILSVQRAERIADEISKRGIDRSRIM-TAGYGSTRP 368 Query: 321 KIASD--PMNSANRRIDILVED 340 S+ + NRR++I V Sbjct: 369 VAPSNNETNMAKNRRVEITVIR 390 >gi|156975609|ref|YP_001446516.1| hypothetical protein VIBHAR_03342 [Vibrio harveyi ATCC BAA-1116] gi|156527203|gb|ABU72289.1| hypothetical protein VIBHAR_03342 [Vibrio harveyi ATCC BAA-1116] Length = 230 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 12/123 (9%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E T G LI+ F P VL + LA + +++ GHTD + Sbjct: 106 EVTDKGKLIA------RVHFAFDRFNLTPLARDVLSSVARQLAQTDYQVTVEGHTD---W 156 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 N L +RA S + L GVSE + + + F ++ S NRR D Sbjct: 157 IGTKAYNQTLGHNRAKSTARELHYYGVSEQK-TTLKSFGESEPIATNNTSSGRSKNRRAD 215 Query: 336 ILV 338 + + Sbjct: 216 VYI 218 >gi|254302748|ref|ZP_04970106.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322940|gb|EDK88190.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 G+ I I+ +FD L + + L + + I I G+TD Sbjct: 57 EEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLSTLAKALGENKDIHIKIDGYTD 116 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN 331 F N LS+ RA + L+ G I I G+ + + S N Sbjct: 117 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPAATNQTEAGRSKN 172 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 173 RRVEFII 179 >gi|90022072|ref|YP_527899.1| putative outer membrane protein [Saccharophagus degradans 2-40] gi|89951672|gb|ABD81687.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 322 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 15/180 (8%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + LS+ +A+K+K A++ LS + + L G+L + D Sbjct: 119 AERMMAELSEGNEVAIKQKVWFNSEAEEAELALSSIGFKKAYRRYLDCLA--GLLPANFD 176 Query: 231 QRNT--PMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDN 284 Q F+ + + P L KI ++ H + I GHTD++ +N Sbjct: 177 QLKRTALYFEPGETDVLSPGLQRQLDKILALVKH-DNKLRMFYIDGHTDSN---GDRAEN 232 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 LS RA L + G+ ED I I ++ + NRR+ + +E + Sbjct: 233 LELSKTRAELVSTYLKRRGIPEDWIV-IRWHGERYPVASNATVNGRARNRRVTVRLERIE 291 >gi|313672972|ref|YP_004051083.1| ompa/motb domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939728|gb|ADR18920.1| OmpA/MotB domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 201 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S E+I + ++I + + + I GHTD+ N+ L L RA S Sbjct: 99 FETGSDQLTEESINMTKEIINEIKNRENPELEIIGHTDSV---GEKEANYLLGLKRAESV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 +L GV ++S I + NRR++++V+ Sbjct: 156 KNILTSQGVDTGMEIELSSLGEDNPLIPMPDETPEPKNRRVEVVVK 201 >gi|78223039|ref|YP_384786.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78194294|gb|ABB32061.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 523 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 89/279 (31%), Gaps = 25/279 (8%) Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +TA +G+ P R Q L + + I ++ + L Sbjct: 245 LTACQGVGSYVKPVPRLGQGLDPLDEQKKKEPVKIRKIIPISSLLVSSLAPQAPANKLEV 304 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + + + ++ + + S E L +E LA + L++ A Sbjct: 305 TVEPGKEEITIKPYGQVTISAQPAAAKAVSSATLEEVSLTQGGEEVRLASRVSGTLENSA 364 Query: 197 -----KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN--------TPMFDKSSSI 243 ++ D + V + R G I D FD Sbjct: 365 LEYTLARLEGITPLYSVDVKGQNVQVASARDG---DIADSMKVYRKFRFPDVTFDFDQWS 421 Query: 244 PLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM- 300 E + ++ E++ T+ + + G+TD + N LSL RA S L+ Sbjct: 422 LSAEGKKSISEVAELVRKDTKWVYLRVDGYTDN--IGSTDY-NMDLSLKRAVSVASYLVA 478 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 + G+ +I I G + + + NRR +IL Sbjct: 479 REGIDAAKIF-IKGLGKSKPLADNATSDGRKLNRRCEIL 516 >gi|326563201|gb|EGE13469.1| OmpA family protein [Moraxella catarrhalis 12P80B1] Length = 551 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 13/185 (7%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + D+ K + +N + E + + D + ++ ++ + + V+ Sbjct: 355 NATTPEDVAKLVEGAKNILPADFTVEAEPELDINTAVADSIE--TARVAIVALGDTVEEN 412 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA 274 + + II+ F S+ E +L E L E + I GHTD Sbjct: 413 EMDILINALNTQIIN------FALDSTEIPQENKEILDLAAEKLKAVPETTLRIIGHTDT 466 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRR 333 N LS RA + + L+ GV+ +R+ ++ + F + A++ NRR Sbjct: 467 Q---GTHEYNQDLSESRAAAVKEYLLSKGVAAERLNTQGASFDYPVASNATEQGRFQNRR 523 Query: 334 IDILV 338 I+ ++ Sbjct: 524 IEFVL 528 >gi|228018089|gb|ACP52723.1| fibronectin-binding protein [Campylobacter coli] gi|228018119|gb|ACP52738.1| fibronectin-binding protein [Campylobacter coli] gi|228018121|gb|ACP52739.1| fibronectin-binding protein [Campylobacter coli] gi|228018123|gb|ACP52740.1| fibronectin-binding protein [Campylobacter coli] gi|228018137|gb|ACP52747.1| fibronectin-binding protein [Campylobacter coli] Length = 224 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +++I ++L + +I GHTD + + N +LS RA S Sbjct: 136 FDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDN--IGSRSY-NQKLSERRANSV 192 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 + L K GV + RI + G+ + + ++D Sbjct: 193 AKKLEKFGVDKSRIQTV-GYGQDKPRSSNDT 222 >gi|289207752|ref|YP_003459818.1| peptidoglycan-associated lipoprotein [Thioalkalivibrio sp. K90mix] gi|288943383|gb|ADC71082.1| peptidoglycan-associated lipoprotein [Thioalkalivibrio sp. K90mix] Length = 188 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 13/122 (10%) Query: 230 DQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282 D ++P+ F+ + + +L+ L+ ++ + + GHTD R Sbjct: 71 DDPDSPLAERLVYFEFDRDEVQSQYMDMLEAHAAYLSQNSGARLRLEGHTDE---RGTRE 127 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340 N L RA S ++L +G S+D+I IS + ++ + NRR++++ E Sbjct: 128 YNLGLGERRAQSVRRILTLNGASDDQIEVIS-YGEEMPVAFEQNEEAWAKNRRVELVYES 186 Query: 341 RQ 342 R+ Sbjct: 187 RR 188 >gi|149377921|ref|ZP_01895649.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] gi|149357811|gb|EDM46305.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] Length = 402 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 100/288 (34%), Gaps = 20/288 (6%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 D+T+ + F + ++ + + E + + L + ++ D K Sbjct: 131 DETRVNVGAGFRYNVSDSVSIRADLREFHGIDESTFDTQATLGLSFAFSRTVADSK---- 186 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++ +N+ S Q + + +D + Sbjct: 187 PAPRKAADSDNDGVPDSRDQCAGTPSGVSVDSNGCERDNDGDGVANSMDQCPNTPAGASV 246 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 + + + A + T +G D + + ET T I + Q F Sbjct: 247 NSRGCELDSDNDGVVNSADQCPGTTAGADVDAMGCEGVTETVET---IELNVQ-----FP 298 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 +SS+ ++++ + E + I GH+D+ + + LS RA + Sbjct: 299 TNSSVIGNAFDNEIRRVANFMLEYPETNVEIAGHSDS--IGEAEYNRF-LSQRRAEAVAT 355 Query: 298 VLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 L + G+SEDR++ + G+ ++D + NRR++ ++ R+ Sbjct: 356 RLTDALGISEDRVNAV-GYGESEPVASNDTAAGRAENRRVEARIQVRR 402 >gi|311696306|gb|ADP99179.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 402 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 8/125 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNI 280 G+ +I F +SS+ ++++ + + + E I I GH+D+ R Sbjct: 282 EGVTETIQTFTIEVQFPTNSSVIGNAYDEEIRRVADFMQENPETIVEIAGHSDS---RGD 338 Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 A N LS RA + L GV R+ + G+ + +++ +ANRR++ Sbjct: 339 ADYNQFLSQRRAEAVAGRLTGPLGVDPARVEAV-GYGEEQPIASNNTADGRAANRRVEAR 397 Query: 338 VEDRQ 342 ++ R+ Sbjct: 398 IQVRR 402 >gi|213970767|ref|ZP_03398891.1| OmpA domain protein [Pseudomonas syringae pv. tomato T1] gi|301383000|ref|ZP_07231418.1| OmpA domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302059103|ref|ZP_07250644.1| OmpA domain-containing protein [Pseudomonas syringae pv. tomato K40] gi|302133343|ref|ZP_07259333.1| OmpA domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924439|gb|EEB58010.1| OmpA domain protein [Pseudomonas syringae pv. tomato T1] Length = 830 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNARDLAAVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E L Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNLDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKVEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVRCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|157377275|ref|YP_001475875.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3] gi|157319649|gb|ABV38747.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3] Length = 201 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD-NWRLSLDRAY 293 +F S P+ ++ I + V++I GH + + D N LS +RA Sbjct: 78 LFANDSYYIDPQYYDQIEVIATFMTDYPNTVVTIEGHCS----KTGSYDHNLTLSQNRAN 133 Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 + L + G++ DR++ I G++ R S+ + NRR+ Sbjct: 134 AVTTTLTEQFGINPDRLTAI-GYSFDRPVDMSETSIAHTRNRRV 176 >gi|90577378|ref|ZP_01233189.1| putative sodium-type flagellar protein MotY precursor [Vibrio angustum S14] gi|90440464|gb|EAS65644.1| putative sodium-type flagellar protein MotY precursor [Vibrio angustum S14] Length = 298 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%) Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286 D R+ + F + +L + L H + I GHTD N + Sbjct: 177 DARDVVLQFQLGQRVVSSSQKQILADLASYLKHDKNVKRVLIDGHTDNV---GSNVANLQ 233 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 +S RA +L ++GV + ++ ++ + + NRR+ I Sbjct: 234 ISKIRADDVASILRENGVRSS-LIEVRSHGSRYPVANNNTQHGKAKNRRVTI 284 >gi|78189866|ref|YP_380204.1| OmpA domain-containing protein [Chlorobium chlorochromatii CaD3] gi|78172065|gb|ABB29161.1| OmpA domain protein [Chlorobium chlorochromatii CaD3] Length = 205 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S+ + LQ+ +L E I I GH D R + N L R Sbjct: 98 GDIFFEYDSATLDESAQMQLQQNAALLQQFIVESIQIEGHCD---IRGTSEYNLALGERR 154 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 A +A + LM+ GV R+ +S F R + + + NRR+ ++ Sbjct: 155 ATTAKEYLMRLGVPASRLETVS-FGEERPFDNGNSEDAWAKNRRVHFVL 202 >gi|19703678|ref|NP_603240.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713798|gb|AAL94539.1| Outer membrane porin F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 172 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 G+ I I+ +FD L + + L + + I I G+TD Sbjct: 47 EEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLSTLAKALGENKDIHIKIDGYTD 106 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 F N LS+ RA + L+ G I I G+ + S N Sbjct: 107 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 162 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 163 RRVEFII 169 >gi|288927607|ref|ZP_06421454.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330441|gb|EFC69025.1| OmpA family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 676 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D PE+ L ++ ++L + V I + H D +R N LS R Sbjct: 509 DNIFYDLDKYTLRPESKQALDELVKLLNENPNVTIELSAHCD---YRGTPEYNKVLSQHR 565 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + Q L+ +G++ R++ + G+ + K Sbjct: 566 ANAVVQYLIDAGIAPQRLTPV-GYGKEKPK 594 >gi|167623616|ref|YP_001673910.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353638|gb|ABZ76251.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 289 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ + + K+ E LA+ V + I +TD+ R+ N R+S RA S Sbjct: 184 YESGGTELTRYAKSQIAKVQEYLAYDKNVDLVLIDAYTDSYGGRSA---NQRVSEQRADS 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++ + SG+ ++RI + G R ++ S NRR+ I + Sbjct: 241 VKELFVASGIGQNRIHTL-GHGERRHVASNQTIDERSRNRRVVIRI 285 >gi|332663816|ref|YP_004446604.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332630|gb|AEE49731.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 406 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 20/209 (9%) Query: 136 NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 Q ++ +++ + + K PP+ E K ++ D Sbjct: 213 KEQPEVVSTPTVKPPTQRIDTPKTNNGGRPTPGKTPPVNNPPVVAENNTTTKNPEKKPDT 272 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILI-SIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++ + K L T + I SI F + +I + L K Sbjct: 273 NSTPPKSIDNPDFSTLKKSDL--TMGQTLRIPSIT-------FAVNDTILSRASYPNLDK 323 Query: 255 IGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + + ++ + GHT + N RLSL RA + L+K GV +R ++ Sbjct: 324 LLTFMNTNPAIVLEVGGHT--NGLCADDYCN-RLSLRRARAVVDYLVKKGVKPERF-QVK 379 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVED 340 G+ + + +DP N+R++I + D Sbjct: 380 GYGKTQPISTVKNDP---KNQRVEIKILD 405 >gi|330871941|gb|EGH06090.1| OmpA domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 666 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 375 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 434 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 435 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 494 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 495 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 551 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 552 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIMIAGHADQL---GDPQSNMQVSKQRA 608 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 609 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 662 >gi|170724840|ref|YP_001758866.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810187|gb|ACA84771.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 201 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q +F S P ++ I + ++I GH + N LS Sbjct: 73 QELKILFPNDSYYIDPMYYDQVEIIATFMRQFPNTKVTIEGHCSKT---GSYEHNLALSQ 129 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 +RA + L + G+ DR++ I G++ R S+ + NRR+ Sbjct: 130 NRANAVTTALSERFGIEPDRLTAI-GYSFDRPIDLSETAMAHTRNRRV 176 >gi|331018731|gb|EGH98787.1| OmpA domain-containing protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 830 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNARDLAAVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E L Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNLDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKVEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + + G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAV-GEGSEKPLVRCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|312129228|ref|YP_003996568.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311905774|gb|ADQ16215.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 705 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 29/277 (10%) Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YF+ ++ + S ++ S + I+ S++ K+ + Q + Sbjct: 452 AYFSSAKNSMGLDDLFKVKLFPSIQPESVVLMEFSFVDEISGQSIEPKVSISPQVEWVWD 511 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 E IF + + + ++++ + K+E Y + +E I Sbjct: 512 EETKIFKTIFQPGQTYELKAESSGYPSFSQSLDFREVKEYLEKKEVYKWRKIGQESIAQT 571 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K + ++ +V + K VL E FD+S + Sbjct: 572 APKTVNAE-----PESVKDMVIEAGKKIVLREV----------------YFDQSKAELRQ 610 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-V 304 E+ V L +I +++ + VI + GHTD A N++L+ R + L++ G + Sbjct: 611 ESFVELDRIKKIMMEHPDMVILLEGHTDNQ---GDANLNFKLAEQRILNVKNYLIEDGQI 667 Query: 305 SEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 E+RI ++ + +R + + + NRR++ + Sbjct: 668 KEERI-QLKSWGQYRPLVKNTTEEERRKNRRVEFTIL 703 >gi|189219501|ref|YP_001940142.1| Outer membrane protein or related peptidoglycan-associated (lipo)protein [Methylacidiphilum infernorum V4] gi|189186359|gb|ACD83544.1| Outer membrane protein or related peptidoglycan-associated (lipo)protein [Methylacidiphilum infernorum V4] Length = 528 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 14/126 (11%) Query: 225 LISIIDQRNTPM---FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFR 278 + D P F ++ + V +Q++ L+ + + + G TD Sbjct: 408 RTLVKDSTRVPFDIRFRFGTAELDNKGRVDIQRLARFLSEAENSDKGVLLIGFTDNV--- 464 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 N LSL+RA S + L G++ + ++G ++ + NRR+++ Sbjct: 465 GSHTYNLGLSLERAQSVAKALESRGIT---VVNVAGAGEEMPVASNESEEGREKNRRVEV 521 Query: 337 LVEDRQ 342 + ++ Sbjct: 522 WLCPKK 527 >gi|218130801|ref|ZP_03459605.1| hypothetical protein BACEGG_02395 [Bacteroides eggerthii DSM 20697] gi|317474322|ref|ZP_07933598.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA] gi|217987145|gb|EEC53476.1| hypothetical protein BACEGG_02395 [Bacteroides eggerthii DSM 20697] gi|316909632|gb|EFV31310.1| OmpA family protein [Bacteroides eggerthii 1_2_48FAA] Length = 225 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + L+ + ++L +T I+I GHTD N ++S +RAY+ Sbjct: 112 LFAFNSSTLSNDAKASLRDLAKILKEDTTTDIAIIGHTDKV---GTYEANMKVSKNRAYA 168 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L GVS + ++ G ++ S NRR+ I Sbjct: 169 VENYLQDCGVSPSQFKQVEGVGYNE--YDESLSASQNRRVVIF 209 >gi|89070199|ref|ZP_01157527.1| OmpA domain protein [Oceanicola granulosus HTCC2516] gi|89044215|gb|EAR50366.1| OmpA domain protein [Oceanicola granulosus HTCC2516] Length = 623 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 8/111 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWR 286 I D R FD S+ ++ V+ I EVL + I + G+TD+ N R Sbjct: 489 ISDTRKIT-FDPGSADIDGDSQRVVDDIAEVLRQCTDLEIEVAGYTDSQ---GREEMNQR 544 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 LS RA + L V + G+ +D ANRRI+ Sbjct: 545 LSQQRAEAVLAALRLRRVPVGAFRAV-GYGEAEPIADNDTAEGREANRRIE 594 >gi|119357899|ref|YP_912543.1| OmpA/MotB domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355248|gb|ABL66119.1| OmpA/MotB domain protein [Chlorobium phaeobacteroides DSM 266] Length = 417 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FD S + + L IGE+L + I G+TD + N +LS R Sbjct: 310 DRLVFDTGKSTLMATSQEQLNNIGEILKAYPAVELKIGGYTDNV---GDPQANKKLSQAR 366 Query: 292 AYSAYQVLMKSGVSEDRISKISGFA--HHRLKIASDPMNSANRRID 335 A + L+K G+ R++ G+ H A++ NRR+D Sbjct: 367 AETVMAELVKLGIDNIRLAA-EGYGIEHPVADNATEEGRQQNRRVD 411 >gi|326794456|ref|YP_004312276.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326545220|gb|ADZ90440.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 422 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS E++ VL++ + + ++GH+ A N RLS RA S Sbjct: 311 FANNSSEVKSESLPVLEEFATAINSYDLKNVEVQGHSS---LDGSASYNLRLSEARAQSV 367 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV--EDRQG 343 VL+K GV I+ G+ + I S+ N+ NRR+ ++ ED++ Sbjct: 368 ADVLVKQFGVDASVITA-KGYGETQPVINEISNEANTVNRRVVAVIQYEDKKA 419 >gi|313676000|ref|YP_004053996.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312942698|gb|ADR21888.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 228 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 18/139 (12%) Query: 204 SGLVADNIVKGVLFETTRTG----ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + ++F +G + + I F +S + L + L K+ ++ Sbjct: 94 EEIAVKEDMDQLVFSLMPSGAGAILRLDIN-------FKQSKAEILENSYGELDKLLNMM 146 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 I + GHTD FR A N RLS R + L VS DRI K F Sbjct: 147 KEYPNMEIQLEGHTD---FRGSASANMRLSEKRVNAVKSYLTSKNVSSDRI-KTKAFGGT 202 Query: 319 RLKIASDPMNSA--NRRID 335 + + NRR++ Sbjct: 203 QPLSRESTEEAKLNNRRVE 221 >gi|149202108|ref|ZP_01879081.1| OmpA family protein [Roseovarius sp. TM1035] gi|149144206|gb|EDM32237.1| OmpA family protein [Roseovarius sp. TM1035] Length = 179 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ L++ + + +I GHTD+ R N LSL RA S Sbjct: 81 LFATDSARIHASGQQRLREFFQQAGAVSY--TIVGHTDS---RASDEYNMDLSLRRANSV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 V SG S I+ + G+ K +++ + NRR++IL Sbjct: 136 AAVARSSGAS---IADVRGYGERVPKASNNTAEGMAQNRRVEIL 176 >gi|1000844|gb|AAA78948.1| 18.5 kDa protein [Bartonella bacilliformis] Length = 171 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS+ + +L + E L I I GH D R N L R Sbjct: 31 DRVFFSLDSSVIEADAQRILVRQAEWLLLYPHHTIMIEGHADD---RGTREYNLALGQRR 87 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED---RQG 343 A + L+ GVS R+ +S + R D ++ + NRR+ I + R+G Sbjct: 88 AIAVRDYLVSLGVSPQRMKTMS-YGKERPVAVCDDISCWNQNRRVVISITSGAVRKG 143 >gi|260432166|ref|ZP_05786137.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415994|gb|EEX09253.1| OmpA domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 299 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 13/149 (8%) Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQR-------NTPMFDKSSSIPLPETIVVLQ 253 + D ++ E T G + D + F+ + L Sbjct: 152 QMIRVTPQDAKPPPLVVEETVQGAGGLLSDLARDGHVILDDLSFESGAVALGEGPFASLA 211 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAY-QVLMKSGVSEDRI-S 310 + L+ + +++ GHTD + + N +S RA + +++ GV +R+ + Sbjct: 212 LLAGYLSDNPGVRLALVGHTDDT---GDLQANINVSTRRAQAVRARLIEAHGVDPERVEA 268 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVE 339 + G+ A+ NRR++ ++ Sbjct: 269 QGVGYLSPLTSNATPEGRELNRRVEAVLL 297 >gi|189502647|ref|YP_001958364.1| hypothetical protein Aasi_1325 [Candidatus Amoebophilus asiaticus 5a2] gi|189498088|gb|ACE06635.1| hypothetical protein Aasi_1325 [Candidatus Amoebophilus asiaticus 5a2] Length = 656 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 226 ISIIDQR--NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282 I I + F ++ + L ++ L + ++ I + GHTD + Sbjct: 537 IEINQTKILKNVYFKYDEYSLNKKSYIELDRLVAFLKTNPDITIELEGHTD--HIGSDEY 594 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334 N +LS RA + Y+ L+++G++ DR++ G+ R +D NRR+ Sbjct: 595 -NQQLSTKRAKAIYEYLLQAGIANDRVN-YKGYGKTRPIAPNDSQENQQLNRRV 646 >gi|220921404|ref|YP_002496705.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946010|gb|ACL56402.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 213 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S+ + V++ +G LA ++ +I I GHTDA + R N LS RA Sbjct: 102 FAYNSATIGRTALPVVKMLGATLARPQLASSIILIVGHTDA---KGSDRVNQLLSERRAE 158 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + Q ++++ GV + + G+ RLK ++P+ ANRR+ Sbjct: 159 AVKQYIVQNYGVPAGNLVAV-GYGKSRLKDPANPLAPANRRVT 200 >gi|328468979|gb|EGF39939.1| putative outer membrane protein [Vibrio parahaemolyticus 10329] Length = 206 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ E L I ++G+ + ++ N LS RA Sbjct: 81 RVLFANDSDEINPVFRRQIRELSEFLKDYPTTSIELQGYASKT---GDSKHNQDLSERRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G+ +R+ +I GF L ++ NRR+ V +G Sbjct: 138 KNVRDALLSYGIEPNRV-RIIGFGDTHLAEQGTDQVSHALNRRVTASVVGYKG 189 >gi|157960193|ref|YP_001500227.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845193|gb|ABV85692.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 201 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q +F S P+ ++ I + I GH + + N LS Sbjct: 73 QELKILFANDSYYIDPQYYPQVEVIASFMQKFPNTQAVIEGHCSKT---GSHQHNQVLSQ 129 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 +RA + +L + G+ R+S + G++ R + ++ NRR+ Sbjct: 130 NRANAVSSLLAERFGIDSGRLSAV-GYSFDRPIDPTHTASAHKINRRV 176 >gi|224438536|ref|ZP_03659456.1| hypothetical protein HcinC1_11101 [Helicobacter cinaedi CCUG 18818] gi|313144962|ref|ZP_07807155.1| membrane-protein map18 [Helicobacter cinaedi CCUG 18818] gi|313129993|gb|EFR47610.1| membrane-protein map18 [Helicobacter cinaedi CCUG 18818] Length = 157 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD + L+K L + + + GHTD+ + + A N+ L RA Sbjct: 52 KVLFDFDKYDIRQDMEDGLEKSVAALKSTGAKVVLEGHTDS--YGSDAY-NYALGTKRAN 108 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPM-NSANRRID 335 + L GVS +I +S + + P N NRR++ Sbjct: 109 AVKNALTTRGVSASQIKTVS-YGESKPACTSGDTPECNQENRRVE 152 >gi|167644957|ref|YP_001682620.1| OmpA/MotB domain-containing protein [Caulobacter sp. K31] gi|167347387|gb|ABZ70122.1| OmpA/MotB domain protein [Caulobacter sp. K31] Length = 190 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDN 284 S++ ++ F + PE L L + + I+G TDA + N Sbjct: 77 SVVLSDDSVKFPLNRHELSPEAEQRLADFASKLKGDNKNVYLEIQGFTDA---SGDPQYN 133 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 L +RA + + L K GV +R++ IS + +D + NRR+ I V Sbjct: 134 ETLGSERAETVRKFLSKQGVPLNRMATIS-YGEDDPVAPNDNPDGRAQNRRVVIQVL 189 >gi|84394101|ref|ZP_00992836.1| protein F-related protein [Vibrio splendidus 12B01] gi|84375292|gb|EAP92204.1| protein F-related protein [Vibrio splendidus 12B01] Length = 211 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P P L +G L+ + + I GHTD + R N LS RA Sbjct: 107 FKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNT---GSDRVNAPLSELRAKEV 163 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L + VS I GF + AS + NRR+++++ Sbjct: 164 KARLESNYVSSRAIY-TRGFGEYVPACTNASPQGKACNRRVELML 207 >gi|311694109|gb|ADP96982.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 305 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLS 288 QR+ F S+ +L I + + E I + GH+D+ DN LS Sbjct: 182 QRSRVPFASGSTQLSDADRQLLDNIVAYVNADSTVERIFVDGHSDSI---GSRIDNRALS 238 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 DRA L SG+ E+ + + +++ P + NRR +I ++ Sbjct: 239 EDRANVVADYLKASGIDEN-MITVRAHGDQYP-VSNRPAD--NRRTNIRLQR 286 >gi|86145932|ref|ZP_01064260.1| putative outer membrane protein [Vibrio sp. MED222] gi|85836387|gb|EAQ54517.1| putative outer membrane protein [Vibrio sp. MED222] Length = 204 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 6/101 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ P + ++++ L I ++G+ AS N N +LS RA + Sbjct: 85 LFANDSAEIKPVFLSQIRQMAAFLKRYENTSIQLQGY--ASKVGNAEH-NLKLSEKRADN 141 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSANRRI 334 + L+ +G+ R + G+ + + ++ NR++ Sbjct: 142 VRRALISNGIPPSRAYTV-GYGDVGFRDNDTETNHALNRKV 181 >gi|298374715|ref|ZP_06984673.1| OmpA family protein [Bacteroides sp. 3_1_19] gi|298269083|gb|EFI10738.1| OmpA family protein [Bacteroides sp. 3_1_19] Length = 658 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 85/279 (30%), Gaps = 17/279 (6%) Query: 59 DDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST 118 + ++ YF G M D + S+ ++ I D I Sbjct: 341 PYVRDSVTLYFASNGHPGMGG----LDLFKATQDSTGKWNVENLGAPINSMGDDFGITFA 396 Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++++ N ++T E + +E + + + Sbjct: 397 GKEERGFFCSNRNDARGYDHIYSFELPTITIFIEGIVNDVDEYPIEDATVRIVGKDGLNV 456 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR----- 232 + L+ D+ + ++ G + N E ++ Sbjct: 457 KVPVKKDGTYRVELERDIRYVMMASARGYLNQNYELHTGPEEKNETYIVDFFLSPISKPV 516 Query: 233 --NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + +D + PE+ L ++ ++L + V I + HTD + + N RL+ Sbjct: 517 VIDNIFYDFDKATLRPESKKALDEMIKMLNDNPNVTIELGAHTDR---KGTDQYNERLAQ 573 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 RA S L+ G+ R+ G+ K + M Sbjct: 574 RRAQSVVDYLIAGGIEAARLEA-KGYGESVPKTINKKMA 611 >gi|170750721|ref|YP_001756981.1| peptidoglycan-associated lipoprotein [Methylobacterium radiotolerans JCM 2831] gi|170657243|gb|ACB26298.1| peptidoglycan-associated lipoprotein [Methylobacterium radiotolerans JCM 2831] Length = 164 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 7/119 (5%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 +++ + F+ S+ P L K L I GH D R N+ Sbjct: 49 VVNIGDRVFFESDSTDLTPTATATLDKQAAWLQRYPRYTFIIEGHADE---RGTREYNFS 105 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 L RA + L G++ R+ +S + R + ++ S NRR I+++ G Sbjct: 106 LGARRAQAVNDYLATRGIAASRMRTVS-YGKERPVAVCNDISCWSQNRRAVIVLDRGAG 163 >gi|254230012|ref|ZP_04923412.1| outer membrane protein [Vibrio sp. Ex25] gi|151937453|gb|EDN56311.1| outer membrane protein [Vibrio sp. Ex25] Length = 288 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 17/206 (8%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGE 257 + LS + + ++ I N F S+ P+ + L + Sbjct: 129 LDYVLSQTTCTP-PDDIEALRSDLNVVAEIYALLNIDNQFAVDSAEINPKYMGHLAEAAY 187 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS--KISG 314 +L + + GH D N +L+ RA + L G++ +R++ + Sbjct: 188 ILRDHPNLTLVVTGHAD---VTGAPDYNQKLAQARAEQVKRYLTVFGITSERVTTKSV-- 242 Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338 + NRR+ I V Sbjct: 243 -GDSLPLYEGETPAVRLTNRRVSIEV 267 >gi|242279943|ref|YP_002992072.1| peptidoglycan-associated lipoprotein [Desulfovibrio salexigens DSM 2638] gi|242122837|gb|ACS80533.1| peptidoglycan-associated lipoprotein [Desulfovibrio salexigens DSM 2638] Length = 196 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 15/183 (8%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G K + + + + L + + RL+ L K Sbjct: 19 GTGCSKKQVESSPASPAVEERMAQQQENEQLKSEEQARLERERALQEQALEEERQAAAAK 78 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 +++ N FD S E +LQ+ E+L V + I G+ Sbjct: 79 KEFDNA--------VVELGNMVHFDFDSFEIKQEYRPLLQQKAEILKKYDNVTMVIEGYC 130 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA 330 D R N L RA +AY+ L+ GV+ +R+S +S F ++ + Sbjct: 131 DD---RGTEEYNLALGERRARAAYEFLILLGVTPERLSIVS-FGEEDPLDPGQNETAWAK 186 Query: 331 NRR 333 NRR Sbjct: 187 NRR 189 >gi|269103007|ref|ZP_06155704.1| peptidoglycan-associated outer membrane lipoprotein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162905|gb|EEZ41401.1| peptidoglycan-associated outer membrane lipoprotein [Photobacterium damselae subsp. damselae CIP 102761] Length = 181 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 7/118 (5%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277 + I + Q T F ++ PE +L+ E L + I GH D Sbjct: 60 MSEQEIRNQQLRQETTVFFKFDNAEIQPEYQAMLEAHAEYLRDHPAVKVIIEGHADE--- 116 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 R N L RA + + L GV ++S +S + + + +D + NRR Sbjct: 117 RGTPEYNIALGERRAAAVVKYLQALGVPASQMSIVS-YGEEKPLVLGHTDADYAKNRR 173 >gi|261884038|ref|ZP_06008077.1| flagellar motor protein MotB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 85 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLM 77 KK+ + + SW + Y+D MT+L+A F+V++ ++ D K + FN Sbjct: 3 KKRKKKHEEGHVDESWLLPYSDLMTLLLALFIVLFATSSVDVQKLKQFSEAFNQIFDGGT 62 Query: 78 TASKGIFDEQNPPERSSQNKID 99 + + P + D Sbjct: 63 SFMETPTSNPLPEAPKKEGNED 84 >gi|254522020|ref|ZP_05134075.1| OmpA/MotB domain protein [Stenotrophomonas sp. SKA14] gi|219719611|gb|EED38136.1| OmpA/MotB domain protein [Stenotrophomonas sp. SKA14] Length = 513 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + LP + + L ++ ++L +SI GHTD S R LS DRA S Sbjct: 412 FATDKAQILPASELQLAQVLQLLQGDPALKLSIEGHTDDSGAVAHNRS---LSEDRARSV 468 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L G++ DR+ + +GF + + + + NRR++++ Sbjct: 469 VAALTAKGIAADRL-QAAGFGADKPVADNGSEEGKARNRRVELV 511 >gi|258627656|ref|ZP_05722431.1| Outer membrane protein A [Vibrio mimicus VM603] gi|258580055|gb|EEW05029.1| Outer membrane protein A [Vibrio mimicus VM603] Length = 194 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ ++ L ++ + LA + I + GHTD + + LS RA S Sbjct: 89 FDTGSAKVSVQSKQWLDRMAQFLASESGIDIVLEGHTDNTGTQKFNDS---LSEKRASSV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++ V+++ I G+ H + N NRR+++ Sbjct: 146 KTALVQRQVAQNAIY-TRGYGEHVPACTNKTKNGRACNRRVEV 187 >gi|258624563|ref|ZP_05719502.1| outer membrane protein, putative [Vibrio mimicus VM603] gi|262165799|ref|ZP_06033536.1| outer membrane protein [Vibrio mimicus VM223] gi|262171367|ref|ZP_06039045.1| outer membrane protein [Vibrio mimicus MB-451] gi|258583156|gb|EEW07966.1| outer membrane protein, putative [Vibrio mimicus VM603] gi|261892443|gb|EEY38429.1| outer membrane protein [Vibrio mimicus MB-451] gi|262025515|gb|EEY44183.1| outer membrane protein [Vibrio mimicus VM223] Length = 212 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS+ P + ++++ E L I ++G+ AS N LS Sbjct: 87 QQLHILFANDSSVIEPAFLTQIRQMAEFLQGYPSTSIELQGY--ASKVGRAEY-NLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ GV+ +R++ I G+ L D ++ NRR+ V +G Sbjct: 144 QRSETVRDQLIRYGVAPNRVN-IVGYGDSVLVAEGEDDISHARNRRVTATVVGYKG 198 >gi|148979688|ref|ZP_01815660.1| outer membrane protein, putative [Vibrionales bacterium SWAT-3] gi|145961665|gb|EDK26963.1| outer membrane protein, putative [Vibrionales bacterium SWAT-3] Length = 202 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P + + E L I I+G+ AS + N LS RA++ Sbjct: 82 LFANDSYEVNPIFSDQITTMAEFLETYQSASIEIQGY--ASKVGSSEY-NLELSKKRAHN 138 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 L+ +G+ R+ ++ G+ RL+ D ++ NRR+ Sbjct: 139 VEDELLYNGIDSSRV-RVVGYGEDRLESDGDDATSHALNRRVT 180 >gi|296328018|ref|ZP_06870553.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154974|gb|EFG95756.1| outer membrane protein OmpF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 182 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 G+ I I+ +FD L + + L + + I I G+TD Sbjct: 57 EEGVTIRREGNNLILSMPELILFDFDKYAVKDGIKPSLSTLAKALGENKDIHIKIDGYTD 116 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 F N LS+ RA + L+ G I I G+ + S N Sbjct: 117 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 172 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 173 RRVEFII 179 >gi|194288903|ref|YP_002004810.1| outer membrane protein, ompa domain [Cupriavidus taiwanensis LMG 19424] gi|193222738|emb|CAQ68741.1| putative outer membrane protein, ompA domain [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L T + I GHTD+ F + ++ RLS+ RA S Sbjct: 101 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341 L+ GV +R+ G +LK+ DP + NRR+++ +V R Sbjct: 158 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRKSQIACQQPNRRVEVEVVGTR 214 Query: 342 QG 343 Sbjct: 215 SA 216 >gi|113866814|ref|YP_725303.1| outer membrane protein or related peptidoglycan-associated (lipo)protein [Ralstonia eutropha H16] gi|113525590|emb|CAJ91935.1| outer membrane protein or related peptidoglycan-associated (lipo)protein [Ralstonia eutropha H16] Length = 217 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L T + I GHTD+ F + ++ RLS+ RA S Sbjct: 101 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341 L+ GV +R+ G +LK+ DP + NRR+++ +V R Sbjct: 158 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRKSQIACQQPNRRVEVEVVGTR 214 Query: 342 QG 343 Sbjct: 215 SA 216 >gi|284051859|ref|ZP_06382069.1| OmpA/MotB [Arthrospira platensis str. Paraca] Length = 285 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 9/174 (5%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 L A ++RLQ + +++++ S + +R+G + I+ Sbjct: 116 RTAALEIQIGNSRPAETLERRLQIIEQQLTAPSSPEAENIPPPTPRTARSRSGNGL-IMT 174 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + +F+ SS P V+L + L + V+ + GHTD + N LS Sbjct: 175 LPSDILFNPGSSTLRPGANVILDNLIPDLQNYRGAVVRVAGHTDD---SGSRQQNLVLSS 231 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 +A + Q L + I G+ R SD NRRI++ + Sbjct: 232 AQAEAIVQYLSNAVDYQAYHWVAI-GYGMTRPALENTSDINRQLNRRIEVAITP 284 >gi|209808859|ref|YP_002264397.1| outer membrane protein OmpA family [Aliivibrio salmonicida LFI1238] gi|208010421|emb|CAQ80772.1| outer membrane protein OmpA family [Aliivibrio salmonicida LFI1238] Length = 201 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 8/113 (7%) Query: 226 ISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 + D+++ +F +SS P ++ + E LA E I ++G AS N Sbjct: 70 VEQSDKKDLKILFANNSSEISPIFKSEIRTMAEFLAEYPETSIQLQGF--ASQQGNAEY- 126 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 N RLS RA + L+ GV+ D+I I GF L D ++ NRR+ Sbjct: 127 NIRLSELRASAVRVALINYGVNPDKIETI-GFGDTLLTAKGDSAVSHALNRRV 178 >gi|90021493|ref|YP_527320.1| NAD-dependent DNA ligase [Saccharophagus degradans 2-40] gi|89951093|gb|ABD81108.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 195 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 9/121 (7%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARD 283 I + F+ S E L+K+ S V+ ++G DA+ Sbjct: 74 EITHIEDVVYFEFDSKELTAEAEQKLEKLANEAKKSENENIVVVLKGFADAT---GPEEY 130 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 N LS +RA + L +GV E R + +D + NRR+ +++E Sbjct: 131 NQELSKERAQNVKAFLESNGV-EAREYNVVALGESNPVADNDTKQGRAQNRRVVLVIEPT 189 Query: 342 Q 342 + Sbjct: 190 E 190 >gi|53802737|ref|YP_115490.1| outer membrane protein MopB [Methylococcus capsulatus str. Bath] gi|4104020|gb|AAD01925.1| MopB [Methylococcus capsulatus] gi|53756498|gb|AAU90789.1| outer membrane protein MopB [Methylococcus capsulatus str. Bath] Length = 348 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 13/130 (10%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIR 269 +KG ++ I I + F S+ +L + E L E I + Sbjct: 224 MKGAKVDSDGCLIRIELHGVN----FKYDSAELTDSAKRILDETAENLILFPEKRDIEVA 279 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPM 327 GHT N RLS+ RA+S L GV +++ G+ + S+ Sbjct: 280 GHTSTE---GTNEYNMRLSIRRAHSVADYLKAKGV-TNQLYP-KGYGEEYPLVPEHSEAD 334 Query: 328 NSANRRIDIL 337 NRR++++ Sbjct: 335 REKNRRVELI 344 >gi|87118960|ref|ZP_01074858.1| OmpF [Marinomonas sp. MED121] gi|86165351|gb|EAQ66618.1| OmpF [Marinomonas sp. MED121] Length = 192 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + L K+G+ L H + + I GHTD+ DN RLS +RA + Sbjct: 64 FHTNKFELEDNELKGLLKLGKFLQKHQSSDVFIEGHTDSM---GDDEDNLRLSQNRANAI 120 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 Q L+ K +S DRI I G ++ ++ + NRR+ Sbjct: 121 KQALVTKFLISSDRIIAI-GHGENQPIANNETEYGRAVNRRVT 162 >gi|114047938|ref|YP_738488.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113889380|gb|ABI43431.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 290 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D+ + + L +I E L++ +V + + +TD+ R++ N ++S RA S Sbjct: 184 YDEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + SG+ +DRI + G R ++D + NRR+ I + Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNDDIEERALNRRVVIRI 285 >gi|73542264|ref|YP_296784.1| OmpA/MotB [Ralstonia eutropha JMP134] gi|72119677|gb|AAZ61940.1| OmpA/MotB [Ralstonia eutropha JMP134] Length = 218 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L T + I GHTD+ F + ++ RLS+ RA S Sbjct: 102 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341 L+ GV +R+ G +LK+ DP + NRR+++ +V R Sbjct: 159 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRTAQIACQQPNRRVEVEVVGTR 215 Query: 342 QG 343 Sbjct: 216 SA 217 >gi|114561619|ref|YP_749132.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114332912|gb|ABI70294.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 200 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 12/116 (10%) Query: 227 SIIDQRNT----PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 SI D +F +S + P+ ++++ V+ ++I GHT R Sbjct: 64 SIKDINERQDLKILFSNNSVVIEPQYYNQIERVANVMTTYPTTKVTIEGHTSK---RGSY 120 Query: 282 RDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 N LS RA + +VL + G+ R++ +G++ R S + NRR+ Sbjct: 121 ELNLALSQKRAKAVIEVLENTFGIDPSRLNA-TGYSFDRPIDNSGTPEAEERNRRV 175 >gi|281423524|ref|ZP_06254437.1| OmpA family protein [Prevotella oris F0302] gi|281402344|gb|EFB33175.1| OmpA family protein [Prevotella oris F0302] Length = 683 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + + PE+ L ++ +L + V I + H D +R A N RLS R Sbjct: 518 DNIFYDFNKATLRPESTAALDELVTLLNENPHVTIELAAHCD---YRGSAEYNLRLSQQR 574 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + + L+ G++ DR++ + G+ R K Sbjct: 575 AENVVRYLISKGIATDRLTAV-GYGKQRPK 603 >gi|311748785|ref|ZP_07722570.1| putative OmpA family protein [Algoriphagus sp. PR1] gi|311748788|ref|ZP_07722573.1| putative OmpA family protein [Algoriphagus sp. PR1] gi|126577322|gb|EAZ81570.1| putative OmpA family protein [Algoriphagus sp. PR1] gi|126577325|gb|EAZ81573.1| putative OmpA family protein [Algoriphagus sp. PR1] Length = 805 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 14/133 (10%) Query: 220 TRTGILISIID---QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + I D Q T FD S+ L++ +L ++ I GHTD Sbjct: 664 DPEDLFTQIQDEIAQIPTIYFDFDKSMLRSVHKKELERTAIMLKRMPNLMLYIEGHTDQ- 722 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNS 329 R N LS RA + L K G+ +R+ + + F + + M+ Sbjct: 723 --RGDDAYNQSLSERRADAVKAYLTKRGIEGERMEE-TWFGETKPVNDCSELDCTSAMHQ 779 Query: 330 ANRRIDILVEDRQ 342 NRR ++ V Q Sbjct: 780 LNRRTELRVGKSQ 792 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 12/111 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D + VL K+GE++ + + HTD+ R N LS +RA + Sbjct: 536 YDLDKYQIREDAKPVLDKLGELMNRYEFLDLLVGSHTDS---RASDEYNITLSNNRAEAV 592 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 + + + + +RI ++ F +L + + NRR ++++E Sbjct: 593 TEYMAQYNIPAERI-RLEWFGEQQLVNDCGDGVPCPETDHQLNRRSELVLE 642 >gi|257125599|ref|YP_003163713.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257049538|gb|ACV38722.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 256 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 10/238 (4%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 ++ E +T + + I N + ENN+ L + N L + Sbjct: 18 PTVSEKVTTSDMRKDIIRANVADIEKDSENNVPILDTPNPEKLTDNDNPDLI--TVTLPQ 75 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + ++K + + +++ ++ K+ +S + ++I + Sbjct: 76 NEKNTSLLDKGGTQPEQSPKSQDQDVISQQQGIRSEIKESASLDTNTQENSINNPQKVQI 135 Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 ++ I+ + N F K+S E VL+ I + + ++SI G+TD S Sbjct: 136 LKSEIITLRAEDLN---FHKNSINLKEEAYSVLKDIKNYIEENDYLVSIVGYTDESGI-- 190 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 A +N RLSL RA L++ G+S+DRI + G + +++ NRR++ Sbjct: 191 AAYNN-RLSLRRAEKVSSKLLELGLSKDRILDLIGRGENNPINSNETKEGRERNRRVE 247 >gi|330970538|gb|EGH70604.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 830 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 68 YFN-------PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 YFN + +T S + +R++++ + ++ + + ++ + + Sbjct: 539 YFNRLETVMLKPTADNLTRSLYLLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSI 598 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKG--KDLCKSTDLEKSINKEENYFLPPL 178 + + LS +Q+ + L + + T + N E Sbjct: 599 AAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQTGKTITANAEAGSNQDYE 658 Query: 179 SKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 + + + + D+ + + + + N + +L ++ + I I + +F Sbjct: 659 YASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKA---IETITLESDTLF 715 Query: 238 DKSSSI---PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRA 292 + E L I L + I I GH D + N ++S RA Sbjct: 716 AFGRADFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQL---GDPQSNMQVSKQRA 772 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA---------NRRIDILV 338 + L+ GV + + I G + + D NRR++I V Sbjct: 773 QTIKTYLVGKGVPAELVDAI-GEGSEKPLVKCDMQQPRAQLIQCLEPNRRVEIEV 826 >gi|149191044|ref|ZP_01869304.1| putative outer membrane protein [Vibrio shilonii AK1] gi|148835072|gb|EDL52049.1| putative outer membrane protein [Vibrio shilonii AK1] Length = 207 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD +S+ P + ++ + L + I I+G+ N LS +RA Sbjct: 85 RILFDNASTYIKPVFQTQISQMADFLKEYPDTTIEIQGYAS---VVGNPEKNLVLSKNRA 141 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRI 334 + ++ +G++ +R++ I G+ + + D ++ NR++ Sbjct: 142 EVVREAIINNGIAPERLT-IVGYGDTQPEELGDTEFAHAMNRKV 184 >gi|260890421|ref|ZP_05901684.1| OmpA family protein [Leptotrichia hofstadii F0254] gi|260860041|gb|EEX74541.1| OmpA family protein [Leptotrichia hofstadii F0254] Length = 180 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L+ I +L + I GHTD++ + N +LSL+RA + Sbjct: 64 FKVDGEKMNESESYDLKYIANMLNTHIEKGSLEIIGHTDST---GSKKHNLKLSLERAIN 120 Query: 295 AYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 A ++L + G+ + + KI G ++ + NRRI+I++ D Sbjct: 121 AAKLLREYGLDKRFSVVKIIGKGGEEPMDTNETVEGRYNNRRIEIILND 169 >gi|188533999|ref|YP_001907796.1| OmpA family protein [Erwinia tasmaniensis Et1/99] gi|188029041|emb|CAO96909.1| OmpA family protein [Erwinia tasmaniensis Et1/99] Length = 407 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 65/184 (35%), Gaps = 19/184 (10%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 E + + LP L + A + L DL +++S +++ + Sbjct: 222 GRSAEPLLQQIWQTPLPQLPGGQRTAA--PQDLFDLRQRLS---------DLIGSHRLDV 270 Query: 220 TRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS-P 276 T G I + +F + PE ++ ++ + + I +TD P Sbjct: 271 TDGDYGNKIIL---PADSLFTYQGAALTPEGRALVARVASAMESRKGTLLIGVYTDNRLP 327 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRI 334 + + S +A + ++++ + G R ++ ++ + NRR+ Sbjct: 328 HSSPFTSTYAYSAAQAEAISNMMVQLIAHPCITVRAEGRGDSRGRVPNNSAENRARNRRV 387 Query: 335 DILV 338 +I + Sbjct: 388 EITL 391 >gi|220925333|ref|YP_002500635.1| peptidoglycan-associated lipoprotein [Methylobacterium nodulans ORS 2060] gi|219949940|gb|ACL60332.1| peptidoglycan-associated lipoprotein [Methylobacterium nodulans ORS 2060] Length = 172 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ S+ P L K + L+ I GH D R N+ L R Sbjct: 62 DRVFFETDSTDLTPTATATLDKQAQWLSRYPHYTFLIEGHADE---RGTREYNFSLGARR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A + L G++ R+ +S + R + ++ S NRR Sbjct: 119 AQTVRDYLASRGIAGSRMRTVS-YGKERPVAVCNDISCWSQNRR 161 >gi|156974345|ref|YP_001445252.1| hypothetical protein VIBHAR_02060 [Vibrio harveyi ATCC BAA-1116] gi|156525939|gb|ABU71025.1| hypothetical protein VIBHAR_02060 [Vibrio harveyi ATCC BAA-1116] Length = 219 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%) Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ + +L + + I G+TD++ N LS RA S Q L+ V+ R Sbjct: 130 LRGVARILVEYPDTSLVIDGYTDST---GSDSYNQTLSERRAESVRQYLVSQKVAPGRAI 186 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+ ++ + NRR++I + + Sbjct: 187 A-RGYGERNPICSNQTSDGRACNRRVEIQILPLK 219 >gi|262394173|ref|YP_003286027.1| outer membrane protein [Vibrio sp. Ex25] gi|262337767|gb|ACY51562.1| outer membrane protein [Vibrio sp. Ex25] Length = 204 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 213 KGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 +G + G I D +F S P ++++ + L SI H Sbjct: 59 EGSEVDNDGCGEYIKASDNMQVRILFANDSDEINPVFRRQVRELSDFLKEYPTT-SIELH 117 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329 AS N LS RA + + L+ + R+ +I GF L + ++ Sbjct: 118 GYASKVGGSQH-NQDLSERRARNVREALLSYNIEPSRV-RIVGFGDTHLAQQGTDEVSHA 175 Query: 330 ANRRIDILVEDRQG 343 NRR+ V +G Sbjct: 176 LNRRVTASVVGYKG 189 >gi|325474507|gb|EGC77694.1| OmpA family protein [Treponema denticola F0402] Length = 1345 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 214 GVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +L + I SII + N F+ + + +L++I +L + + Sbjct: 1211 DILVIRDGDKLKIAVPSIIFRANAADFEGLDKAIVDKNKSILKRIAVILNKFPEYQVQVE 1270 Query: 270 GHTDASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GH + + LS RA + Q L+K GV R+S I G + + + Sbjct: 1271 GHANTTTGTEKEETTALLPLSKQRAEAVRQFLIKEGVRSSRLSSI-GMGSSKPVASLNDR 1329 Query: 328 NS--ANRRIDILV 338 ++ NRR++ ++ Sbjct: 1330 DNWWKNRRVEFIL 1342 >gi|226069484|dbj|BAH36952.1| OmpA-like outer membrane protein [Pasteurella pneumotropica] Length = 347 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I +A + +++ G+TD N +LS RA S Sbjct: 234 FAFGKANLKPQAQATLDGIYGEIAQVSNAKVAVAGYTDRI---GKDAANLKLSQRRADSV 290 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 L+ GV+ I+ +G+ + D + +RR++I V Sbjct: 291 ANYLVAKGVAAQDITA-TGYGEANPVTGATCDAVKGRKALIACLAPDRRVEIAV 343 >gi|330937557|gb|EGH41498.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 221 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L I + GH+D N LS RA + Sbjct: 99 FPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDN---SGNRLTNRDLSRRRALA 155 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 G+ E +I+ + ++ + NRR+++ +E Sbjct: 156 VMDYFKAQGIPEQQIT-LRFHGERYPLAPNTNEANRARNRRVNVHLER 202 >gi|42527533|ref|NP_972631.1| OmpA family protein [Treponema denticola ATCC 35405] gi|41818118|gb|AAS12542.1| OmpA family protein [Treponema denticola ATCC 35405] Length = 1338 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 214 GVLFETTRTGILI---SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +L + I SII + N F+ + + +L++I +L + + Sbjct: 1204 DILVIRDGDKLKIAVPSIIFRANAADFEGLDKAIVDKNKSILKRIAVILNKFPEYQVQVE 1263 Query: 270 GHTDASPFRNIARDN--WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 GH + + LS RA + Q L+K G+ R+S I G + + + Sbjct: 1264 GHANTTTGTEKEETTALLPLSKQRAEAVRQFLIKEGLKSSRLSSI-GMGSSKPVASLNDR 1322 Query: 328 NS--ANRRIDILV 338 ++ NRR++ ++ Sbjct: 1323 DNWWKNRRVEFIL 1335 >gi|110638992|ref|YP_679201.1| outer membrane peptidoglycan-associated protein [Cytophaga hutchinsonii ATCC 33406] gi|110281673|gb|ABG59859.1| outer membrane peptidoglycan-associated protein [Cytophaga hutchinsonii ATCC 33406] Length = 710 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 14/112 (12%) Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ + + E + I L + I I HTD + N LS RA Sbjct: 601 YETNQTDLNDEAKAAIDNILIPFLKEHPTDKIIISSHTDDV---GSHKYNENLSDQRALK 657 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DP-------MNSANRRIDILV 338 Q L++ G+S +I + G+ + ++ +P S NRR + L+ Sbjct: 658 VMQYLIQKGISAKQI-QAKGYGETKPIASNINPDGSENEIGRSINRRTEFLI 708 >gi|255038084|ref|YP_003088705.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950840|gb|ACT95540.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 648 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L K+ ++L + + I + HTDA R N LS +RA SA L Sbjct: 551 IRPDAAIELDKLVQILKDNPTMTIELSSHTDA---RATDAYNMTLSQNRAESAVAYLNSK 607 Query: 303 GVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILVED 340 G+ DR+ G+ L I + + + NRR + + Sbjct: 608 GIEADRMEA-KGYGERELIIPNAKTEEEHQRNRRTEFTILS 647 >gi|258621934|ref|ZP_05716964.1| outer membrane protein, putative [Vibrio mimicus VM573] gi|258585872|gb|EEW10591.1| outer membrane protein, putative [Vibrio mimicus VM573] Length = 212 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS+ P + ++++ E L I ++G+ AS N LS Sbjct: 87 QQLHILFANDSSVIEPAFLTQIRQMAEFLQGYPSTSIELQGY--ASKVGRAEY-NLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 R+ + L++ GV+ +R++ I G+ L D ++ NRR+ V +G Sbjct: 144 QRSETVRDQLIRYGVAPNRVN-IVGYGDSVLVAEGEDDISHARNRRVTATVVGYKG 198 >gi|229588474|ref|YP_002870593.1| hypothetical protein PFLU0931 [Pseudomonas fluorescens SBW25] gi|229360340|emb|CAY47197.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 257 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F +S L + L + I I Sbjct: 98 ESMANTGVEVQRQGDQIKLI-MPGNITFATNSDAISSSFYQPLNNLANSLKQFNQNTIQI 156 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV+ +S G ++ Sbjct: 157 VGYTDST---GSRQLNMDLSQRRAQSVANYLTSQGVNGANLSA-RGAGPDNPIASNADVN 212 Query: 327 MNSANRRIDI 336 + NRR+++ Sbjct: 213 GRAQNRRVEV 222 >gi|254249294|ref|ZP_04942614.1| Outer membrane protein [Burkholderia cenocepacia PC184] gi|124875795|gb|EAY65785.1| Outer membrane protein [Burkholderia cenocepacia PC184] Length = 263 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L + ++I G TD++ A N LS RA + Sbjct: 160 FATDSAALTSQARNDLDRFIAANRGVEFARVAITGFTDST---GSAAHNRTLSEARARTV 216 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 L +G+ S G A A+ + NRR++I ++ + Sbjct: 217 VNYLRSNGLQARSFSAEGLGAADPVASNATADGRAQNRRVEIRLDVK 263 >gi|42521994|ref|NP_967374.1| outer membrane protein A [Bdellovibrio bacteriovorus HD100] gi|39574525|emb|CAE78367.1| outer membrane protein A [Bdellovibrio bacteriovorus HD100] Length = 171 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ SS + L +I L ++ I I G TD P + R N RLS RA Sbjct: 68 FNVGSSELNASSRRALNEIASELKNTANSYEKIRISGLTD--PQGDADR-NLRLSEARAT 124 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI--DIL 337 L+ GV ED++ + A R + + + +RR+ +I+ Sbjct: 125 RVRDYLVSRGVPEDKLETVGKGAVARDTLGTSSQMARDRRVDFEIV 170 >gi|269219690|ref|ZP_06163544.1| OmpA family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210932|gb|EEZ77272.1| OmpA family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 212 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 18/112 (16%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ P VL + + + ISI GHTD+ N +LS DRA + Sbjct: 106 FEVDSANLTPRAREVLDGLVSKWRKKKPKEISITGHTDSVA---DDDHNQKLSEDRAKAV 162 Query: 296 YQVLM--KSGVSEDRISKISGFAHHRLKI--------ASDPMNSANRRIDIL 337 + SGVS ++ G ++ +ANRR+ I+ Sbjct: 163 RSYVAPKVSGVS----IEVEGKGEKEPAASETNEDGSPNEAGKAANRRVVIV 210 >gi|217970007|ref|YP_002355241.1| OmpA/MotB domain protein [Thauera sp. MZ1T] gi|217507334|gb|ACK54345.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 200 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 13/148 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE-TIVV 251 L ++++ +GL I TG + I F S P + Sbjct: 60 AALREQLAKATTGLAGVEIGSA-----GDTGFRVQIPVADG---FASGSPAIRPTLGRAL 111 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + A + + + GHTD+ N RLS+ RA + L + G++ DR++ Sbjct: 112 DALAPALAAEAGVAVRVVGHTDSQ---GSEMVNLRLSIARAEAVVAWLRERGIALDRLAA 168 Query: 312 -ISGFAHHRLKIASDPMNSANRRIDILV 338 G A A++ NRRI++++ Sbjct: 169 DGRGEADPLTSNATEEGRVRNRRIELIL 196 >gi|167762473|ref|ZP_02434600.1| hypothetical protein BACSTE_00828 [Bacteroides stercoris ATCC 43183] gi|167699579|gb|EDS16158.1| hypothetical protein BACSTE_00828 [Bacteroides stercoris ATCC 43183] Length = 224 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 17/143 (11%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 A KI +V D + T +GI +F +SS + L+ + Sbjct: 83 AAKIEGAQVEMVKDANNLDAVKVTFDSGI-----------LFTFNSSTLSNDAKASLRDL 131 Query: 256 GEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 ++L +T I+I GHTD N ++S +RAY+ L GVS + ++ G Sbjct: 132 AKILKEDTTTDIAIIGHTDKV---GTYEANMKVSKNRAYAVENYLQDCGVSPSQFKQVEG 188 Query: 315 FAHHRLKIASDPMNSANRRIDIL 337 ++ S NRR+ I Sbjct: 189 VGYNE--YDESLSASENRRVVIF 209 >gi|153002489|ref|YP_001368170.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185] gi|217975056|ref|YP_002359807.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223] gi|151367107|gb|ABS10107.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|217500191|gb|ACK48384.1| OmpA/MotB domain protein [Shewanella baltica OS223] Length = 202 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 + +F S+ PE ++++ L ++I GHT + N LS +RA Sbjct: 77 SILFPNDSAYIAPEYYPQIEEVAVFLQQYPTTKVTIEGHTSRT---GTDERNLVLSQERA 133 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 + VL + G+ +R++ G+ + + NRR+ Sbjct: 134 DAVTAVLAERFGIDRNRLTA-KGYGSSNPVVLERTPEAEIRNRRV 177 >gi|157960967|ref|YP_001501001.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845967|gb|ABV86466.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 198 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + + LP ++ I L + I + GHTD+ A N +LSL RA Sbjct: 95 FGFAQADILPSQEQTIEVIARWLKSTRVSIQLVGHTDSI---GDASFNLQLSLKRAEQVK 151 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +V ++ G + DR +I+G + NRR++ LV Sbjct: 152 KVFVEQFGFAADRF-QINGVGSSLPVANNQTAFGREQNRRVEFLV 195 >gi|71907527|ref|YP_285114.1| OmpA/MotB [Dechloromonas aromatica RCB] gi|71847148|gb|AAZ46644.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 198 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 MF+ ++ ++ + I + I GHTDA+ + N LSL+RA Sbjct: 96 MFESGTTNLTTASLDQIPNIVAASQKRPAVSVRISGHTDAT---GSDKVNDALSLERAMQ 152 Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIASDPMNSANRRIDILV 338 + +L + G+ R+ ++ G + + NRR+ ++V Sbjct: 153 VWNLLQQKGIPA-RLMSVTSHGKGNPAIPTPDGVAEPRNRRVVVIV 197 >gi|262068085|ref|ZP_06027697.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693] gi|291378171|gb|EFE85689.1| outer membrane porin F [Fusobacterium periodonticum ATCC 33693] Length = 183 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 13/127 (10%) Query: 221 RTGILIS------IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + G+ I I+ +FD L + + L + + I I G+TD Sbjct: 58 QEGVTIRREGNNLILSMPELILFDFDKYAVKEGIKPSLATLAKALGENKDIHIKIDGYTD 117 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 F N LS+ RA + L+ G I I G+ + S N Sbjct: 118 ---FIGTEAYNLDLSVKRARAIKDFLISKGAIGSNI-SIEGYGEQNPADTNQTAAGRSRN 173 Query: 332 RRIDILV 338 RR++ ++ Sbjct: 174 RRVEFII 180 >gi|78046418|ref|YP_362593.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034848|emb|CAJ22493.1| OmpA family outer membrane lipoprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 400 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 16/126 (12%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G LI++ D +FD S P+ VL +G L T + +RGHTDA + Sbjct: 283 GYLITLND---RILFDFDKSDIRPDAARVLDTLGAALTKVTAKDMQVRGHTDA---KGSD 336 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334 N LS RA + + + G+ + + +P NRR+ Sbjct: 337 DYNQALSERRANAVLA--ALRARGAAQSANAKGYGESQPVAPNTLNGQDNPGGRQLNRRV 394 Query: 335 DILVED 340 +I + Sbjct: 395 EIFLRT 400 >gi|325473749|gb|EGC76938.1| OmpA family protein [Treponema denticola F0402] Length = 440 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 88/245 (35%), Gaps = 30/245 (12%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 D + D+ + N+ + + F+ +N ++ +H L S G+ L Sbjct: 223 DEELMSSEGGRKTDIYLDDINRPVLIREKIDEEFFYANGKKIKHRGFLLHFYSYTGRALA 282 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFE 218 + ++ S ++E P + LQ +I K Sbjct: 283 QGGLVQSSPSQEAASKKTPSQEIP---------LQKEKTEIKPN----------KDFEVA 323 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPF 277 T+ G ++ + + + F+ ++ L L +I ++L S + GHT Sbjct: 324 KTKRGTMLRLKNLQ----FEPDKAVLLKGEEAKLDEIAKILKKSESEFFFVEGHTADVGK 379 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRID 335 + LS +RA + + L+K G+ ++ G + + + + NRR++ Sbjct: 380 PEEEKI---LSQERAKTVIEKLVKRGIPAEKFI-YQGAGGTKPIAPNGTEEGRAQNRRVE 435 Query: 336 ILVED 340 I + D Sbjct: 436 ITIID 440 >gi|294139825|ref|YP_003555803.1| OmpA family protein [Shewanella violacea DSS12] gi|293326294|dbj|BAJ01025.1| OmpA family protein [Shewanella violacea DSS12] Length = 210 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + + VL +I + L + + + GHTD+ N+ N RLS RA S Sbjct: 106 FEFAKAEVSYSQWQVLAQIKQFLQLNDVDLCLIGHTDS--IGNLEA-NQRLSEARAKSVM 162 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 ++L++ G R + G +D + NRR++ LVE Sbjct: 163 RILVEDYGFEPGRFI-VRGMGTRSPIGTNDTPGGRTLNRRVNFLVE 207 >gi|229894342|ref|ZP_04509525.1| Outer membrane protein [Yersinia pestis Pestoides A] gi|229703740|gb|EEO90756.1| Outer membrane protein [Yersinia pestis Pestoides A] Length = 327 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 195 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 251 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 252 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 301 >gi|163754882|ref|ZP_02162003.1| hypothetical protein KAOT1_02672 [Kordia algicida OT-1] gi|161324949|gb|EDP96277.1| hypothetical protein KAOT1_02672 [Kordia algicida OT-1] Length = 560 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%) Query: 240 SSSIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ + K+ VL + + I HTD+ R A N LS RA + Sbjct: 454 GSATLTAAAKREIDTKLLPVL-QTGVSVEIASHTDS---RGSAASNEALSQRRAQAVTNY 509 Query: 299 LMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342 L+ G++ +I +G+ RL ++ + ANRR V D++ Sbjct: 510 LISKGINSSKIVS-NGYGERRLLNRCKDGVSCTEREHLANRRTQFRVLDQK 559 >gi|114763456|ref|ZP_01442863.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601] gi|114543994|gb|EAU47005.1| OmpA domain protein [Roseovarius sp. HTCC2601] Length = 637 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 8/116 (6%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 ++ II R F+ S+ V+ I E+L + + I+GHTD+ Sbjct: 487 EAQIVEIIGDRKIN-FEPGSANLDASAKDVMDDIAELLKLCGDIPLEIQGHTDSQ---GR 542 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 N +LS DRA + L V ++ G+ + + + ANRRI Sbjct: 543 ESMNEQLSQDRAQAVLDALRNRRVLTAS-YRVKGYGEMQPIADNGTEEGREANRRI 597 >gi|89890263|ref|ZP_01201773.1| putative outer membrane protein [Flavobacteria bacterium BBFL7] gi|89517178|gb|EAS19835.1| putative outer membrane protein [Flavobacteria bacterium BBFL7] Length = 571 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 ++D + L ++ + + + I I HTD+ R N LS +R Sbjct: 458 KNILYDLDKYYIRADAEPELNRLVQFMKDNPGVRIEISSHTDS---RGSNAYNKTLSQNR 514 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 A +A + G+ +R+ I G+ RL S + NRR ++ V Sbjct: 515 ASAARDYIASQGIDANRVVGI-GYGETRLLNRCADGIECSAAEHQINRRTEMKV 567 >gi|114049133|ref|YP_739683.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113890575|gb|ABI44626.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 185 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ PE +++I L ++I GHT + N LS +RA + Sbjct: 62 LFPNDSAYIAPEYYPQIEEIAMFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 118 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 VL + R++ I G+ R + ++ NRR+ Sbjct: 119 VTAVLADRFSIDRSRLTAI-GYGSSRPLVLEHTPDAETRNRRV 160 >gi|282600293|ref|ZP_05973733.2| membrane protein OmpA-family [Providencia rustigianii DSM 4541] gi|282565742|gb|EFB71277.1| membrane protein OmpA-family [Providencia rustigianii DSM 4541] Length = 586 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 ++ + +FD + VL + + A S +I + G+TD++ N Sbjct: 446 EMVTLDSLSLFDVGQYTLKTDATKVLVDALLNIKAKSGWLIVVSGYTDST---GNPELNQ 502 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 +LSL RA S ++++ + G+ + +++ + NRR++I + + Sbjct: 503 KLSLKRAESVRDWMIQTSDISPTCFAVQGYGQNNPVASNETSEGRAQNRRVEIRLIPQ 560 >gi|225569968|ref|ZP_03778993.1| hypothetical protein CLOHYLEM_06063 [Clostridium hylemonae DSM 15053] gi|225161438|gb|EEG74057.1| hypothetical protein CLOHYLEM_06063 [Clostridium hylemonae DSM 15053] Length = 255 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 9/193 (4%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K ++L KS + E + + + + + ++ L L + Sbjct: 42 KWENLVKSMNPEAAEPSQIVTDTMEKEGTENVPGANTTEIDQKFDEMYDNL--LKMQDAS 99 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIR 269 V G I ++ FD S + E VL V+A +++ I + Sbjct: 100 GEVADIQIAKGDGYQFITFKDNVFFDGDSYVLRDEGKSVLDTFSSVIAPASDAIKEIQVL 159 Query: 270 GHTD-ASP-FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 GHT A P N + LS R+ + + + E + +G+ R D Sbjct: 160 GHTSQAEPNIPNEVMTDRVLSATRSAVVVAYVQQKNIIEAKKLVSAGYGQFRPIDTFDTF 219 Query: 327 -MNSANRRIDILV 338 + NRR++IL+ Sbjct: 220 EGRARNRRVEILI 232 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 57/177 (32%), Gaps = 3/177 (1%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +K++ P W Y D +T+L+ FF++++ I++ D + + + NP Sbjct: 1 MKRRQKS---PEEGSDWMGTYGDMVTLLLCFFVLLYSISSVDQVKWENLVKSMNPEAAEP 57 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 +++ N ++ +++ ++ + Q + + + Sbjct: 58 SQIVTDTMEKEGTENVPGANTTEIDQKFDEMYDNLLKMQDASGEVADIQIAKGDGYQFIT 117 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ 193 + + ++GK + + + + + L + Sbjct: 118 FKDNVFFDGDSYVLRDEGKSVLDTFSSVIAPASDAIKEIQVLGHTSQAEPNIPNEVM 174 >gi|107027335|ref|YP_624846.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|105896709|gb|ABF79873.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] Length = 119 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STE-VISIRGHTDASPFRNIAR-DNWRLSLDRAY 293 + P ++ IG +A + + G+TD P I+R +N LS RA Sbjct: 12 YASGDVTVEPWWASMMATIGRTIAASVPGAYVQVVGYTDNVPAGAISRGNNQALSEARAR 71 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 ++ +GV IS +G + P S NRR+++ V + Sbjct: 72 EVARIFAAAGVPMQNISA-TGQGDADPLADNGTAPGRSRNRRVEVTVSN 119 >gi|304559160|gb|ADM41824.1| Outer membrane protein [Edwardsiella tarda FL6-60] Length = 152 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +++ F T G +F + + PE+ + ++G L+ + Sbjct: 26 VLQQQGFTPTPEGWS---FGMSEKVLFGNNQATLRPESQAHVAELGHALSQVAILHARLD 82 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMN 328 G+TD + N +LSL RA + G+ ++ + G ++ A+ Sbjct: 83 GYTDNY---GTDQYNQQLSLKRADKVADAMASGGMPRANLTTRGMGKSNPIADNATRQGR 139 Query: 329 SANRRIDILVE 339 + NRR+ I+++ Sbjct: 140 AENRRVAIVIQ 150 >gi|325287615|ref|YP_004263405.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323069|gb|ADY30534.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 366 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 13/112 (11%) Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + SS E ++ ++ VL + + I HTD+ R + N LS RA S Sbjct: 258 NTGSSTLTAEAKRIIDSRLMPVLNQNPGVKLEIASHTDS---RGNSVSNQSLSERRAKSV 314 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 L+ GV+ + +G+ ++LK ++ ++ANRR + + + Sbjct: 315 ADYLISKGVNSS-LLVANGYGENKLKNRCKDGVSCTEREHAANRRTEFRLIN 365 >gi|91223761|ref|ZP_01259025.1| hypothetical protein V12G01_18492 [Vibrio alginolyticus 12G01] gi|91191253|gb|EAS77518.1| hypothetical protein V12G01_18492 [Vibrio alginolyticus 12G01] Length = 288 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 25/210 (11%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-----SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + LS E R+ + I ++++ N F S+ P+ + L Sbjct: 129 LDYVLSQTTCTPPDD---IEALRSDLNIVSDIYALLNIDNQ--FAVDSAEINPKYMGHLA 183 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-- 310 + +L + + GH DA+ N +L+ RA + L G++ +R++ Sbjct: 184 EAAYILRDHPNLSLVVTGHADAT---GTPDYNQKLAQARAEQVKRYLTVFGITSERVTTK 240 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338 + + + NRR+ I V Sbjct: 241 SV---GDNLPLYEGETSAVRLTNRRVSIEV 267 >gi|153832375|ref|ZP_01985042.1| outer membrane protein [Vibrio harveyi HY01] gi|148871404|gb|EDL70267.1| outer membrane protein [Vibrio harveyi HY01] Length = 284 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 17/210 (8%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L + Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDIVIQRRRLNQLELQ 128 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255 + LS E R+ + I +I D N F S+ P+ + L + Sbjct: 129 LDYVLSQTTCKPPQD---IEALRSDLNIVANIYDLLNVDNQFAVDSAEINPKYMGHLAEA 185 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + GH DA+ N +L+ DRA + L G++ DR+ + Sbjct: 186 AYILRDHPSLSLVVTGHADAT---GTPEYNQKLAQDRAEQVKRYLNVFGITSDRV-QTKS 241 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 NRR+ I V + + Sbjct: 242 VGETLPLYDGQTPAVRLTNRRVSIEVLNAK 271 >gi|86130800|ref|ZP_01049399.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85818211|gb|EAQ39371.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 632 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P L ++ V+ VIS HTD R N LS RA S Sbjct: 526 FDFDKSNIRPSAAAELDRLVNVMKQYPTMVISAESHTD---IRGSESYNKNLSQRRADSM 582 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRR 333 ++ G++ RIS I G IA ++ + NRR Sbjct: 583 RDYVVSKGINASRISSI-GKGESEPAIACGTNCTEDEHQLNRR 624 >gi|255319440|ref|ZP_05360655.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens SK82] gi|262379403|ref|ZP_06072559.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens SH164] gi|255303508|gb|EET82710.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens SK82] gi|262298860|gb|EEY86773.1| peptidoglycan-associated lipoprotein [Acinetobacter radioresistens SH164] Length = 190 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 82 FDYDSSDLSNEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 138 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ +++ +S + + NRR++I Sbjct: 139 QSYLVTNGVNPNQLEAVS-YGKEMPINPGHDEAAWKENRRVEI 180 >gi|163800343|ref|ZP_02194244.1| putative protein F-related protein [Vibrio sp. AND4] gi|159175786|gb|EDP60580.1| putative protein F-related protein [Vibrio sp. AND4] Length = 209 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 11/185 (5%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 D+ N E + +K A + + Q+ +K S + L + ET Sbjct: 32 DVAPRTNSELRHPEWGYTKSYAAAPRYVTQAQNSMEKKSDGMMSLERFLNRHQIAHETIN 91 Query: 222 -TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279 +++ + +Q + F SS ++ +Q +G LA T+ + + GH D++ + Sbjct: 92 GEHLMVRLKEQVH---FQTGSSRLSAQSQGWIQSLGHYLAKRTDIDVVVNGHADSAGAAS 148 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 LS RA + L+++ + R+ GF + + ++ + NRR++++ Sbjct: 149 FNDS---LSEKRAREVEKQLLETSLPRQRVFS-RGFGEYVPQCSNATASGKACNRRVELM 204 Query: 338 VEDRQ 342 + Q Sbjct: 205 LIVGQ 209 >gi|262394300|ref|YP_003286154.1| outer membrane protein [Vibrio sp. Ex25] gi|262337894|gb|ACY51689.1| outer membrane protein [Vibrio sp. Ex25] Length = 272 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 17/206 (8%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 53 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 112 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGE 257 + LS + + ++ I N F S+ P+ + L + Sbjct: 113 LDYVLSQTTCTP-PDDIEALRSDLNVVAEIYALLNIDNQFAVDSAEINPKYMGHLAEAAY 171 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS--KISG 314 +L + + GH D N +L+ RA + L G++ +R++ + Sbjct: 172 ILRDHPNLTLVVTGHAD---VTGAPDYNQKLAQARAEQVKRYLTVFGITSERVTTKSV-- 226 Query: 315 FAHHRLKIASDPMNSA--NRRIDILV 338 + NRR+ I V Sbjct: 227 -GDSLPLYEGETPAVRLTNRRVSIEV 251 >gi|253698930|ref|YP_003020119.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251773780|gb|ACT16361.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 204 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS+ L E L + + + I GH+D R N LS RA SA Sbjct: 102 FDFDSSLLNDAARATLVANLEKLKANPKASLRIEGHSDE---RGSDDYNLALSERRAQSA 158 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + L G +++ + G+ R + + + NRR + ++ Sbjct: 159 KKYLQALGFPAEKL-SVLGYGEERPAVKGESEEFWAKNRRDEFVI 202 >gi|332827935|gb|EGK00657.1| hypothetical protein HMPREF9455_02931 [Dysgonomonas gadei ATCC BAA-286] Length = 661 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 32/137 (23%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +D + PE+ L + ++L + V I + HTD + +N RLS R Sbjct: 522 ENIFYDFDKATLRPESKEELDGLIDLLNLNPNVTIELSAHTDRK--GSDEYNN-RLSQRR 578 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHR---------------------------LKIA 323 A S L+ G+++DR++ + G A + Sbjct: 579 AESVVNYLITHGIAKDRLTAVGKGKAQPKNVTKAVVKKYDFLKEGEVLTEQFIQELPPEQ 638 Query: 324 SDPMNSANRRIDILVED 340 D + NRR + V Sbjct: 639 QDMADQVNRRTEFRVLS 655 >gi|262038728|ref|ZP_06012088.1| OmpA/MotB domain-containing protein [Leptotrichia goodfellowii F0264] gi|261747280|gb|EEY34759.1| OmpA/MotB domain-containing protein [Leptotrichia goodfellowii F0264] Length = 362 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +P L I V+ I GHTD++ N +LS+ RA + Sbjct: 246 FKVDGRVPNQAEAKDLGTIANVINQFADGGTIDFVGHTDST---GSNAYNQKLSVARAQN 302 Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 ++L + G+ IS I+G + ++ + NRR+++ ++ Sbjct: 303 VARLLREYGLKNS-ISYGTITGKGESQPADTNNTVQGRYNNRRVELFFQN 351 >gi|56461082|ref|YP_156363.1| OprF [Idiomarina loihiensis L2TR] gi|56180092|gb|AAV82814.1| Outer membrane porin [Idiomarina loihiensis L2TR] Length = 363 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +SS ++ + E + I+I GHTD++ + W LS RA + Sbjct: 252 FDLNSSNIRSGERSDIKDMAEFMKEHPQLDITIHGHTDST--GEAKYNQW-LSERRAEAV 308 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 L+K G+ + R+ G + K+ + NRRI+ Sbjct: 309 ANALVKQHGIEKSRVD-FKGHGESQPKVRENSAADRQENRRIE 350 >gi|124005068|ref|ZP_01689910.1| peptidoglycan-associated cytoplasmic membrane protein, putative [Microscilla marina ATCC 23134] gi|123989320|gb|EAY28881.1| peptidoglycan-associated cytoplasmic membrane protein, putative [Microscilla marina ATCC 23134] Length = 680 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 22/204 (10%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--IS 200 K+S E + + ++ + + + + + + RKK K+ I Sbjct: 487 EKSSTQTAEENNTSVSEEVSSDRDNGVYKATMIK--TGKNYMVLVRKKGFYQYKKEVNIP 544 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + ++ V ++I + + G+ + +F S P I L I L Sbjct: 545 TNITTPVKEDIPLTKIKPGDKLGLQV---------LFGFDSYQIQPRYISHLDSIANYLK 595 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHH 318 TE V+ I GHTD N +N L+ R+ + L+ K G+ ++ G+A Sbjct: 596 EYTEMVVEISGHTDN--IGNRWYNNL-LAKRRSQAVINYLINKKGIPAAQVV-FKGYADS 651 Query: 319 RLKIASD--PMNSANRRID-ILVE 339 + + + NRR+D I+++ Sbjct: 652 KPLGTNTTVTGRALNRRVDGIVIK 675 >gi|288802401|ref|ZP_06407840.1| OmpA family protein [Prevotella melaninogenica D18] gi|288334929|gb|EFC73365.1| OmpA family protein [Prevotella melaninogenica D18] Length = 672 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 GI + I+ + +D + PE+ L + +L + V I + HTD + A Sbjct: 496 GINVPIL--IDNIFYDFDKATLRPESEKALDALVNLLKENPNVTIELSAHTD---YLGSA 550 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 N RLS RA + L G+ DR++ + G+ R K Sbjct: 551 DYNKRLSQRRADAVVAYLTAHGIVRDRLTPV-GYGKERPK 589 >gi|254474524|ref|ZP_05087910.1| OmpA family protein [Ruegeria sp. R11] gi|214028767|gb|EEB69602.1| OmpA family protein [Ruegeria sp. R11] Length = 185 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ R N RLS RA + +V G RI + G+ ++ +D Sbjct: 117 ITGHTDS---RASDEYNMRLSQRRANAVAEVGESVG---ARILEARGYGERDPRVPNDSA 170 Query: 328 N--SANRRIDIL 337 + + NRR++I+ Sbjct: 171 SNMAQNRRVEII 182 >gi|94309657|ref|YP_582867.1| OmpA/MotB [Cupriavidus metallidurans CH34] gi|93353509|gb|ABF07598.1| outer membrane protein or related peptidoglycan-associated (lipo)protein [Cupriavidus metallidurans CH34] Length = 217 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + L T + I GHTD+ F + ++ RLS+ RA S Sbjct: 101 LFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDS--FGSDKYND-RLSIRRAES 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------NRRIDI-LVEDR 341 L+ GV +R+ G +LK+ DP + NRR+++ +V R Sbjct: 158 VKAYLVSKGVEANRVY-TEGKGKRQLKV--DPKSCKGNRTAQIACQQPNRRVEVEVVGTR 214 Query: 342 QG 343 Sbjct: 215 SA 216 >gi|319793387|ref|YP_004155027.1| peptidoglycaN-associated lipoprotein [Variovorax paradoxus EPS] gi|315595850|gb|ADU36916.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus EPS] Length = 172 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE ++ L + ISI GHTD R N L RA + Sbjct: 70 FDYDSYTVKPEFQSIVDGHARFLKSAPQRRISIEGHTDE---RGGREYNLALGQKRAEAV 126 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 + L GV++ +I +S F + + + + NRR +I Sbjct: 127 RRALTLLGVNDSQIEAVS-FGKEKPAVQGGGEEAWAQNRRAEI 168 >gi|294142621|ref|YP_003558599.1| OmpA family protein [Shewanella violacea DSS12] gi|293329090|dbj|BAJ03821.1| OmpA family protein [Shewanella violacea DSS12] Length = 200 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 228 IIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 I D+ +F S P ++ I + ++I GH + N Sbjct: 67 IHDRSELKILFPNDSYYIDPMYYDQVEVIAVFMNDFPNTNVTIEGHCSKT---GSYEHNL 123 Query: 286 RLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 LS +RA + +L + ++ DR++ I G+++ R SD + NRR+ Sbjct: 124 ALSQNRANAVTSLLAEHYSIASDRLTAI-GYSYDRPVDESDTDMAHTRNRRV 174 >gi|146300030|ref|YP_001194621.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146154448|gb|ABQ05302.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 712 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 +I + + FD + E+ VVL ++ E++ VI I HTD+ R + N Sbjct: 594 RLIIKTDPIYFDYNLWYIRKESKVVLGRVVELMKKYPGMVIEIGSHTDS---RGNEKFNA 650 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 LS RA S + +++SG+ RIS G+ I S+ + NRR + ++ Sbjct: 651 DLSQKRANSTREFIIQSGIEAKRISA-KGYGESVPIIKCKTDDACSEEEHELNRRSEFVI 709 Query: 339 ED 340 + Sbjct: 710 KS 711 >gi|313677408|ref|YP_004055404.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312944106|gb|ADR23296.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 680 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 14/150 (9%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQK 254 + T+ +++ +FET +L II + + +D S+ + + L K Sbjct: 494 VGKTVDKSQLTSLITNKVFET--EILLEEIILDKAFELENIYYDFDSANIRADAAIELDK 551 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + +L + I + HTDA R A N LS RA SA ++ G+ RI Sbjct: 552 LVTILKDNPPIKIELSSHTDA---RGEAAYNQELSKRRAESAVAYIISQGIDPSRIKA-R 607 Query: 314 GFAHHRLKIAS---DPMNSANRRIDILVED 340 G+ +L I + + NRR + V + Sbjct: 608 GYGESQLIIEDAQTEEEHETNRRTEFKVTE 637 >gi|294146707|ref|YP_003559373.1| OmpA-family protein [Sphingobium japonicum UT26S] gi|292677124|dbj|BAI98641.1| OmpA-family protein [Sphingobium japonicum UT26S] Length = 288 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ + L + + + G+TD++ N LS RA Sbjct: 177 FDTGKAVLSAQAKNDLCATAATAEGMSNALLLVVGYTDST---GDDEFNQELSEKRAGRV 233 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L ++ G R+ +G A ++D + NRR+ + + +G Sbjct: 234 VNYLQQACGWKPYRMLTPTGMAEADPVASNDTIEGKAQNRRVAVNILVSKG 284 >gi|156974515|ref|YP_001445422.1| hypothetical protein VIBHAR_02232 [Vibrio harveyi ATCC BAA-1116] gi|156526109|gb|ABU71195.1| hypothetical protein VIBHAR_02232 [Vibrio harveyi ATCC BAA-1116] Length = 284 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 17/208 (8%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L + Sbjct: 69 TKLHLEALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDIVIQRRRLNQLELQ 128 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255 + LS E R+ + I +I D N F S+ P+ + L + Sbjct: 129 LDYVLSQTTCKPPQD---IEALRSDLNIVANIYDLLNVDNQFAIDSAEINPKYMGHLAEA 185 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + GH DA+ N +L+ DRA + L G++ DR+ + Sbjct: 186 AYILRDHPSLSLVVTGHADAT---GTPEYNQKLAQDRAEQVKRYLNVFGITSDRV-QTKS 241 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVED 340 NRR+ I V + Sbjct: 242 VGETLPLYDGQTPAVRLTNRRVSIEVLN 269 >gi|89068039|ref|ZP_01155456.1| OmpA/MotB family protein [Oceanicola granulosus HTCC2516] gi|89046278|gb|EAR52335.1| OmpA/MotB family protein [Oceanicola granulosus HTCC2516] Length = 173 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F PE VL L A++ I GH D N L R Sbjct: 61 DRVLFLVDQYTLTPEGRAVLDGQARWLQANADYRAVIEGHADEQ---GTREYNLALGSRR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR-IDIL 337 A + + L+ GV R+ ++ L++ +++ + NRR + ++ Sbjct: 118 ANAVREYLVSQGVPSSRLQTVTYGKERPLEVCSAESCYAQNRRAVTVI 165 >gi|327313465|ref|YP_004328902.1| OmpA family protein [Prevotella denticola F0289] gi|326946064|gb|AEA21949.1| OmpA family protein [Prevotella denticola F0289] Length = 697 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + PE+ L ++ ++L + V I + HTD + A N RLS R Sbjct: 529 DNIFYDFDKATLRPESEKALNELVKLLEENPNVTIELSAHTD---YIGSAEYNKRLSQRR 585 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + L G+ DR++ + G+ R K Sbjct: 586 ADAVVAYLTSHGIVRDRLTPV-GYGKERPK 614 >gi|126725522|ref|ZP_01741364.1| OmpA/MotB [Rhodobacterales bacterium HTCC2150] gi|126704726|gb|EBA03817.1| OmpA/MotB [Rhodobacterales bacterium HTCC2150] Length = 170 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FD S +L + L + ++ + GH D N L R Sbjct: 60 DRVLFDVDQSTLNDAGRTLLSQQAAWLNSNPAYMVLVEGHADEQ---GTRAYNLALGDRR 116 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 A +A L+ GV R+S ++ F R + + S NRR I++ Sbjct: 117 ATAARAYLVSQGVDASRLSTVT-FGKERPLEICSQEACYSQNRRAVIIL 164 >gi|54302322|ref|YP_132315.1| outer membrane protein OmpA [Photobacterium profundum SS9] gi|46915744|emb|CAG22515.1| hypothetical outer membrane protein OmpA [Photobacterium profundum SS9] Length = 324 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + I LQ I + L + E + + GHTD+ R N LS +RA Sbjct: 215 FAFDSDTLSQQDIDQLQPIAQRLVNFPETELFVIGHTDS---RGAEAYNQNLSEERAAVV 271 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 L G+ + RI + G +D + NRR+++ Sbjct: 272 AGYLATHFGIEQSRI-QAQGRGELEPVATNDTEDGRGQNRRVEVF 315 >gi|114321319|ref|YP_743002.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227713|gb|ABI57512.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 276 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 L ++A+N+ + E R D +FD S++ E ++++ L Sbjct: 127 RRLLCEIMAENLARERTVEVERVVYRTLSTD----VLFDFDSAVLRAEGQDTIREVAAGL 182 Query: 260 AH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS-EDRISKISGFA 316 ++ I GHTD + N RLS RA + L+K+G S D +++ G A Sbjct: 183 QKEFIDPLVVIVGHTD--RIGDPGY-NQRLSERRADAVMDALLKNGFSRRDVVAQGRGEA 239 Query: 317 HHRLKIASDPMNSA-------NRRIDILVEDR 341 + D A NRR+++ V +R Sbjct: 240 EPVVFCEGDRATPALIACLSPNRRVEVQVLER 271 >gi|296329419|ref|ZP_06871912.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153464|gb|EFG94289.1| outer membrane protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 153 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ + FD S P+ +L I E + + I+I GHTD+ + A N++ Sbjct: 61 TIVLDERSLNFDFDKSNVKPQYYDLLNNIKEFVEQNNYEITIVGHTDS--IGSNAY-NFK 117 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 LS RA S L++ G+SEDRI I + Sbjct: 118 LSRRRAESVKAKLLEFGLSEDRIVGIEAMGEEQPIA 153 >gi|218507201|ref|ZP_03505079.1| putative outer membrane protein, OmpA family [Rhizobium etli Brasil 5] Length = 208 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 10/106 (9%) Query: 237 FDKSSSIP----LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V I +VL I GHTDA + N LS R Sbjct: 93 FATGSAEIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 149 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S VL G+ + + G+ LK+ + NRR+ I Sbjct: 150 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTAGPEQENRRVTI 194 >gi|307822249|ref|ZP_07652481.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] gi|307736815|gb|EFO07660.1| OmpA/MotB domain protein [Methylobacter tundripaludum SV96] Length = 100 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + I GHTD + + LS RAY+ + L G+S DRI + G+A Sbjct: 14 KRQPDKVLIEGHTDNVGSNSTHQG---LSDRRAYAVWTALNDMGISSDRI-RTRGYADAY 69 Query: 320 LKIASDPMNSA--NRRIDILVEDRQG 343 +D NRR++I++ D G Sbjct: 70 PVAGNDTTAGRQLNRRVEIILSDANG 95 >gi|255008700|ref|ZP_05280826.1| putative outer membrane protein [Bacteroides fragilis 3_1_12] gi|313146435|ref|ZP_07808628.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135202|gb|EFR52562.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 399 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Query: 209 DNIVKGVLFETTRTGILIS--IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265 D IV+ ++ + ++ I D + F + E+ + L KI ++L Sbjct: 254 DRIVERIVEKRVEVPTVVESHICDLFDNIHFAFDKDVVTSESELTLDKIADLLKSYPDNN 313 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGFAHHRLKIA 323 I G+TDA R N LS RA + Y+ L+K V + + + A Sbjct: 314 FLITGYTDA---RGGDNYNMDLSKRRAKAVYRALLKRQVPQHMLKWRGVGYHASSVPASG 370 Query: 324 SDPMNSANRRIDI 336 D + +R++ I Sbjct: 371 PDKVRMGDRKVSI 383 >gi|254450850|ref|ZP_05064287.1| peptidoglycan-associated lipoprotein [Octadecabacter antarcticus 238] gi|198265256|gb|EDY89526.1| peptidoglycan-associated lipoprotein [Octadecabacter antarcticus 238] Length = 175 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 + +F+ +S L L+ +++ ++ I GH D N L R Sbjct: 65 DRVLFEVDTSTLTAVGRNTLDGQAGWLSTNSDYLAVIEGHADEQ---GTREYNLALGARR 121 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR-IDIL 337 A + + L+ G++ RI +S L + S+ + NRR + I+ Sbjct: 122 ANAVREYLISRGLASSRIRTVSYGKERPLAVCSEESCYAQNRRAVTII 169 >gi|83312347|ref|YP_422611.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] gi|82947188|dbj|BAE52052.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] Length = 410 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 230 DQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 D R + M FD S+ P+ + L++ A +S+ G+TD A N R Sbjct: 170 DVRRSFMVNFDLGSAKLSPQALQTLKEAAAAQAQMYAPLVSVAGYTDTL---GSADANLR 226 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 LS RA + L K GV+ I + L +A + + NRR++I + Sbjct: 227 LSRQRADAVTAELTKLGVNPA-IIAENALGESSLAVATGDNKAEAKNRRVEITL 279 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 10/103 (9%) Query: 236 MFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F SS + + + + +++ G TD + A N RLS +RA + Sbjct: 314 FFLPGSSRLGTADIERLKMVVAAQKNMKPKTVTVVGFTDQT---GSAATNARLSRERAQA 370 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + K G S + + + RR++IL Sbjct: 371 VAAEIAKLGGSTTSVEA------RPGETWGSSYDGQARRVEIL 407 >gi|146329268|ref|YP_001210055.1| OmpA domain-containing protein [Dichelobacter nodosus VCS1703A] gi|146232738|gb|ABQ13716.1| OmpA domain protein [Dichelobacter nodosus VCS1703A] Length = 194 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +I V+ + L + + + GHTD R N L RAYS Sbjct: 94 FSYDSAQLDSRSIAVITEHARYLRDHPDTRVVLEGHTDE---RGSREYNIGLGERRAYSV 150 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 ++ + GV++ ++ ++ + R + +++ + NRR+ I+ Sbjct: 151 KRIFEQQGVAQTQM-RVLSYGEERPALWCSNESCYARNRRVVII 193 >gi|119471346|ref|ZP_01613818.1| hypothetical protein ATW7_16907 [Alteromonadales bacterium TW-7] gi|119445622|gb|EAW26906.1| hypothetical protein ATW7_16907 [Alteromonadales bacterium TW-7] Length = 1559 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 70/207 (33%), Gaps = 24/207 (11%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + K L K + K L + +A + LQ + I + Sbjct: 469 PPETPEAMERYNKSLGKKLGIPKVAMDATGNALNIIDLTTNIAALGQTTLQQIGTNIPNL 528 Query: 203 LSG-----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL----Q 253 VA++ + + + ++I F +S + + + Sbjct: 529 AQAKQHYKTVANDYFEHLSAKEIVKDVVIE-------GTFSLNSEQVTDDYRNTILQQSE 581 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISK 311 + + L + +++ GHT N N LS RA + +L+ ++G+ E RI Sbjct: 582 AVIKALKQNESLKVTVAGHTCD--IGNYDY-NMALSERRAEAVKHILVTQAGIDEARIE- 637 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDI 336 + G + + + + NRR+ I Sbjct: 638 VLGLGYAQPLINNKDEASRAQNRRVHI 664 >gi|46203195|ref|ZP_00208848.1| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum magnetotacticum MS-1] Length = 170 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ SS P L K L + I GH D R L R Sbjct: 60 DRVFFESDSSDLTPTATATLDKQASWLQRYSRYSFLIEGHADERGTREYNYS---LGARR 116 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337 A + L G++ R+ +S + R + ++ S NRR + +L Sbjct: 117 AQAVLDYLTSRGIAPSRMRTVS-YGKERPVAVCNDISCWSQNRRSVSVL 164 >gi|325860329|ref|ZP_08173451.1| OmpA family protein [Prevotella denticola CRIS 18C-A] gi|325482208|gb|EGC85219.1| OmpA family protein [Prevotella denticola CRIS 18C-A] Length = 697 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + PE+ L ++ ++L + V I + HTD + A N RLS R Sbjct: 529 DNIFYDFDKATLRPESEKALNELVKLLEENPNVTIELSAHTD---YIGSAEYNKRLSQRR 585 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + L G+ DR++ + G+ R K Sbjct: 586 ADAVVAYLTSHGIVRDRLTPV-GYGKERPK 614 >gi|325275196|ref|ZP_08141163.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] gi|324099683|gb|EGB97562.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] Length = 309 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L I E + + + GH+D N LS RA + Sbjct: 179 FPGGGIELDDAAKARLDVILEYMKADPSVNHVELNGHSDN---SGNRLTNRDLSRRRALA 235 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 G+ +++I+ + ++ + NRR++I ++ Sbjct: 236 VADYFKAHGIKDEQIT-VRFHGERYPVAKNNTAANRARNRRVNIELDR 282 >gi|27462205|gb|AAO15380.1|AF330622_1 outer membrane protein [Helicobacter bizzozeronii] Length = 172 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 7/114 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F +SS P+ VL++ E L +++ GH D R N L R Sbjct: 62 DRVFFSLNSSSIEPDAEHVLKRQAEWLLRYPHYFVTVEGHADD---RGTREYNLALGQRR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 + + L+ GVS R+ IS + R D + + NRR+ + + +G Sbjct: 119 SVAVRDYLVSLGVSSQRMRTIS-YGKERPVAVCDDNSCWNQNRRVVLTINSVKG 171 >gi|153003801|ref|YP_001378126.1| OmpA/MotB domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027374|gb|ABS25142.1| OmpA/MotB domain protein [Anaeromyxobacter sp. Fw109-5] Length = 171 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K + G ++N F + P ++++ L Sbjct: 29 KKAAGSATVGKLEKQINKRLLEEG-------RKNQCSFKTDTDELEPGCDAKMKRLANAL 81 Query: 260 AHSTEVIS----------IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + ++ + GHTD+ A+ N LS RA + L+ +G+ +D I Sbjct: 82 VDAKKQLNGAGVQNFKFVVSGHTDS---SGSAKHNDALSAKRAAVVERELVANGIPKDEI 138 Query: 310 SKISGFAHHRLKIASD---PMNSANRRIDILVE 339 + G R + D + NRR ++ V+ Sbjct: 139 QSV-GMGSKRPLVKPDDTPAKKAKNRRYELQVK 170 >gi|84688003|ref|ZP_01015866.1| OmpA family protein [Maritimibacter alkaliphilus HTCC2654] gi|84663984|gb|EAQ10485.1| OmpA family protein [Rhodobacterales bacterium HTCC2654] Length = 142 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 16/112 (14%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKI---GEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 Q +F S + L++ A+ ++ GHTD+ R N RL Sbjct: 35 QNTDVLFKTDSYQLTAQGQQWLRQFFASAGAFAY-----AVYGHTDS---RASDEYNMRL 86 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 S +RA + V +SG + ++ GF R ++ NRR++I+ Sbjct: 87 SQNRANTVAGVARQSGAV---VDRVVGFGERRPIAPNNSAANMQKNRRVEIV 135 >gi|325954863|ref|YP_004238523.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323437481|gb|ADX67945.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 500 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIAR 282 + + + + +F+ +S +P + ++ ++L I GH D R Sbjct: 369 VEVAKRLSNILFEYNSDKIVPSSYEDVRIAAQILNSEDLLANSYYIDGHADQ---RGRDA 425 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 N LSL RA + +L++ G + + G +L + NRR+++L Sbjct: 426 YNKALSLKRAQALVNILVERGNVDRKRLTARGLGKTQLLCTENTEECYQRNRRVEVL 482 >gi|254475683|ref|ZP_05089069.1| OmpA/MotB [Ruegeria sp. R11] gi|214029926|gb|EEB70761.1| OmpA/MotB [Ruegeria sp. R11] Length = 177 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 + +F S L L + + I +I GH D N L R Sbjct: 67 DRVLFAVDQSTLSEAAKATLVGQARWLTSNPDYIVTIEGHADEQ---GTREYNLALGARR 123 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ R+ ++ + R +++ + NRR Sbjct: 124 ANAAREFLISQGVAGSRL-QVVSYGKERPLEICSNEACYAKNRR 166 >gi|126726180|ref|ZP_01742022.1| OmpA/MotB family protein [Rhodobacterales bacterium HTCC2150] gi|126705384|gb|EBA04475.1| OmpA/MotB family protein [Rhodobacterales bacterium HTCC2150] Length = 305 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 11/141 (7%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 ++ S L+ + + + G+L+ +F S+ L+ + Sbjct: 165 EETPSVLTPDPVSPKTETPVSTVSDDGVLVL-----EDLLFQPGSADLTAGDYASLENLA 219 Query: 257 EVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAY-QVLMKSGVSEDRISK-IS 313 +L + E +I GHTDA N +S RA S +++ + +S DR+S Sbjct: 220 ALLKENPEKKAILVGHTDAV---GALEVNIAISEKRAISVMTRMVEQYEISADRLSAKGV 276 Query: 314 GFAHHRLKIASDPMNSANRRI 334 GF R +D NRR+ Sbjct: 277 GFLAPRASNDTDEGRQKNRRV 297 >gi|269139251|ref|YP_003295952.1| OmpA/MotB domain protein [Edwardsiella tarda EIB202] gi|267984912|gb|ACY84741.1| OmpA/MotB domain protein [Edwardsiella tarda EIB202] Length = 162 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 +++ F T G +F + + PE+ + ++G L+ + Sbjct: 36 VLQQQGFTPTPEGWS---FGMSEKVLFGNNQATLRPESQAHVAELGHALSQVAILHARLD 92 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMN 328 G+TD + N +LSL RA + G+ ++ + G ++ A+ Sbjct: 93 GYTDNY---GTDQYNQQLSLKRADKVADAMASGGMPRANLTTRGMGKSNPIADNATRQGR 149 Query: 329 SANRRIDILVE 339 + NRR+ I+++ Sbjct: 150 AENRRVAIVIQ 160 >gi|91224838|ref|ZP_01260098.1| hypothetical protein V12G01_01555 [Vibrio alginolyticus 12G01] gi|91190384|gb|EAS76653.1| hypothetical protein V12G01_01555 [Vibrio alginolyticus 12G01] Length = 1581 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 28/199 (14%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + + ++ ++K+ E L++ + + + L + + + N + Sbjct: 536 QLVNQNKKVDKAEQGTEEVTKDYLAQIPVWKTANHIQEEKLEQALKDARDQ--SGNQIDA 593 Query: 215 VLFETTRT-GILISIIDQRNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTE-VISIR 269 +L ++R GI I F+ P + + VL + + I Sbjct: 594 ILVNSSRGAGIKIEFA-------FNSREKELKDHAPIFKQLAASLANVLENEPNLRVEIE 646 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK------- 321 GH + N ++S +RA A ++LMK V E R+ ++ F + Sbjct: 647 GHACQV---GTEKANMQVSAERAEYAKKLLMKEFPVFEGRV-SVAAFGESKPVYVPKQGE 702 Query: 322 --IASDPMNSANRRIDILV 338 ++P NRR+ I + Sbjct: 703 KVDRNNPNLRQNRRVVIRI 721 >gi|170693033|ref|ZP_02884194.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170142031|gb|EDT10198.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 259 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 17/120 (14%) Query: 232 RNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286 +F S P L E + I + GHTD N Sbjct: 140 EGEALFPFGKSSLNSMLPRGRAELDAAIEKIRKEDGVTRIDVVGHTDRI---GSDESNRA 196 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDILV 338 LS RA + L+ G+ +RI + SG + P +RR+ I + Sbjct: 197 LSQARAETVKAYLVAHGLDAERI-RASGAGSSQPVSHCPPGETPAVIACLQKDRRVTIAI 255 >gi|307293378|ref|ZP_07573224.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] gi|306881444|gb|EFN12660.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] Length = 291 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ + L + + + G+TD++ N LS RA Sbjct: 180 FDTGKAVLSAQAKNDLCATASTAEGMSNALLLVVGYTDST---GGDEFNQELSEKRAGRV 236 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 L ++ G R+ +G A ++D + NRR+ + + +G Sbjct: 237 VNYLQQACGWKPYRMLTPTGMAKADPLASNDTAEGKAQNRRVAVNILVSKG 287 >gi|320538522|ref|ZP_08038383.1| OmpA family protein [Treponema phagedenis F0421] gi|320144629|gb|EFW36384.1| OmpA family protein [Treponema phagedenis F0421] Length = 1347 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 227 SIIDQRNTPMF-DKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGH--TDASPFRNIAR 282 SII ++N P F D + VL++I ++L I + GH T R Sbjct: 1230 SIIFRKNEPDFQDLPQATVNKNL-QVLKRIAQILNKFPDYKIRVEGHANTTTGTLREERE 1288 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRIDILV 338 LS RA + Q L+++GV R++ G +D N NRR++ ++ Sbjct: 1289 YLLPLSEKRAEAIRQYLIENGVRASRLTA-EGKGGTEPVADFTDRNNWWKNRRVEFIL 1345 >gi|320352974|ref|YP_004194313.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121476|gb|ADW17022.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 359 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD + PE L ++G +L + V + + G D+ N RLS R Sbjct: 250 NNILFDFDKAFIRPEHHAQLDQLGRLLVANPHVYVVLSGFCDSL---GSEAYNIRLSQRR 306 Query: 292 AYSAYQVLMKS-GVSEDRISKI-SGFAHHRLKIASDPMNSANRRIDILV 338 A S + L K + +DRI G+A+ A++ NRR+ I++ Sbjct: 307 AESVRRYLQKKFTIKKDRILLYWYGYANPVASNATEEGRQLNRRVTIVL 355 >gi|126662535|ref|ZP_01733534.1| OmpA family protein [Flavobacteria bacterium BAL38] gi|126625914|gb|EAZ96603.1| OmpA family protein [Flavobacteria bacterium BAL38] Length = 621 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +V + ++ ++ T +++ F+ + S + L K+ V+ Sbjct: 489 EQVVVEALLNPIIPIITEKEVILQ------PIFFEFNKSNITADGAAELDKLVAVMNEYP 542 Query: 264 EVISIR-GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 E++ HTD+ R N +LS RA S Q L+ GV+++RIS GF K+ Sbjct: 543 EMVIFAKSHTDS---RGSDSYNIKLSDRRAKSTVQYLISKGVAKERISG-QGFGESEPKV 598 Query: 323 A----SDPMNSANRRIDILVEDR 341 A ++ ++ NRR + L+ + Sbjct: 599 ACKSCTEEEHAQNRRSEFLIVKK 621 >gi|110639062|ref|YP_679271.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110281743|gb|ABG59929.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 380 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 +F +S S LP+ L I E + + + GHTD A+ N LS R Sbjct: 274 KNLLFSQSKSELLPQAAKELDMIAEWMNRETDVRVRFIGHTDNQ---GDAKLNVLLSEQR 330 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 L+ G++ DRI + G+ + + NRR+++ + Sbjct: 331 VSKVKAYLVSKGIAADRIETV-GYGGAFPITDNAFEETRKLNRRVEMEIL 379 >gi|83950613|ref|ZP_00959346.1| OmpA domain protein [Roseovarius nubinhibens ISM] gi|83838512|gb|EAP77808.1| OmpA domain protein [Roseovarius nubinhibens ISM] Length = 641 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 32/298 (10%) Query: 66 EQYFNPFGKNLMTASKGIFDEQN--PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 E+ F+ L TA +F PP + + ++ + G K Sbjct: 320 EKSFDDVVGGLETALPDVFALHAVLPPPPTDAEVVIPEFVATLSPEGLVQLRGRLGSDKL 379 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKI 183 + +++ +S + + S + + P S + Sbjct: 380 RETVDSFARARFSSAGVHTKARVVEGLPADWPVRVLAGLESLSYLENGAVTVTPDSIDVT 439 Query: 184 LAMKRKKRLQDLAKKISSTLSG-------LVADNIVKGVLFETTRTGIL--ISIIDQRNT 234 K ++ ++ TL + ++ + T + I +I Sbjct: 440 GNTGNKDASAQISGFLAETLGERGQFEIDVTYQEVLDPIAALPTPEECVSKIQLIVAERK 499 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ S +L I E+L E + I G+TD+ N +LS +RA Sbjct: 500 INFEPGSDKLDSNGAAILDDIAEILKKCGEIKLEIAGYTDSQ---GRESMNQQLSENRAR 556 Query: 294 SAYQVLMKSGVSEDRISKI-------SGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 + + R+ ++ G+ + + D ANRRI+ + + Sbjct: 557 AV--------LDGLRMRRVITSTYEAVGYGENDPIADNDSDEGREANRRIEFHLIKPE 606 >gi|146301688|ref|YP_001196279.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156106|gb|ABQ06960.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 653 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD V L KI V+ + I IR HTD+ R+ A+ N LS RA S Sbjct: 545 FDLGKWNITDAAAVELGKILAVMQEYPKMRIDIRSHTDS---RSSAKSNLVLSDKRAKSI 601 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 L+ G+ R+ + G+ +L S+ + NRR + ++ Sbjct: 602 MAWLVSKGIDAKRL-RGKGYGESQLLNRCKDGVKCSEEEHLKNRRSEFMI 650 >gi|119775600|ref|YP_928340.1| OmpA family protein [Shewanella amazonensis SB2B] gi|119768100|gb|ABM00671.1| OmpA family protein [Shewanella amazonensis SB2B] Length = 187 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S+ E L + + + + ++GHTD N+RLS +RA + Sbjct: 84 FDFGSAFVPFEAAAKLAWLAKSIETDHVSLLLQGHTDDI---GTEAANYRLSAERADNVA 140 Query: 297 QVL-MKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 L M + + RI+ S F ++ NRR+DIL+ Sbjct: 141 ASLAMDFAIPKARITTAS-FGESMPVAPNNTEIGRQQNRRVDILIL 185 >gi|288959770|ref|YP_003450110.1| outer membrane protein [Azospirillum sp. B510] gi|288912078|dbj|BAI73566.1| outer membrane protein [Azospirillum sp. B510] Length = 203 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 236 MFDKSSSIPLPET-IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S P V+ + +L + I + GHTD N +LS+ RA + Sbjct: 94 FFDWDKSTITPAADRVIGDAVSAILKNGGAKIQVVGHTDT---SGSPAYNQKLSVRRADA 150 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 + L+ G+ I+ G +L + + P +NRR IL Sbjct: 151 VKKALVAKGIQAANIT-TEGKGESQLLVQTGPNVREPSNRRAQIL 194 >gi|302877290|ref|YP_003845854.1| OmpA/MotB domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580079|gb|ADL54090.1| OmpA/MotB domain protein [Gallionella capsiferriformans ES-2] Length = 217 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 7/103 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQK---IGEVLAHSTEVISIRGHTDASPFRNIARDN 284 I+ +FD + PE VL + G L T + I GH D R N Sbjct: 91 IVRLNAGTLFDFDRAEVKPEGKTVLDEKIVTGMKLHTDTGPLLIIGHADRI---GSERYN 147 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 RLS RA + L++ GV R+ + G S+ Sbjct: 148 QRLSERRANAVRDYLVEQGVGAQRL-SVQGKGESEPDPVSNTG 189 >gi|167623057|ref|YP_001673351.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353079|gb|ABZ75692.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 365 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ + ++++ + ++I G + A N LS RA S Sbjct: 254 FANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNT---GKADYNMDLSERRAASV 310 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVED 340 ++L+ ++ R+S G+ R + +S N+ NRRI+ V D Sbjct: 311 AEILINEYDIAPGRVSS-KGYGITRPLMEGSSAEANAVNRRIEAHVTD 357 >gi|117920980|ref|YP_870172.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117613312|gb|ABK48766.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 290 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + + L +I E L++ +V + + +TD+ R++ N ++S RA S Sbjct: 184 YEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + SG+ +DRI + G R ++D + NRR+ I + Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNDDIEERALNRRVVIRI 285 >gi|54309710|ref|YP_130730.1| putative peptidoglycan-associated lipoprotein [Photobacterium profundum SS9] gi|46914148|emb|CAG20928.1| putative peptidoglycan-associated lipoprotein [Photobacterium profundum SS9] Length = 174 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 + + + Q T F ++ + +L+ E L S + + GH D R Sbjct: 57 SEQELRSQELRQEQTVYFKFDTAEIQADYQAMLEAHAEFLSNSSDVKVIVEGHADE---R 113 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 N L RA + Q L GVS +IS +S + + + +D + NRR Sbjct: 114 GTPEYNIALGERRANAVVQYLQALGVSASQISIVS-YGEEKPLVLGHTDADYAKNRR 169 >gi|126740601|ref|ZP_01756288.1| OmpA domain protein [Roseobacter sp. SK209-2-6] gi|126718402|gb|EBA15117.1| OmpA domain protein [Roseobacter sp. SK209-2-6] Length = 644 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNW 285 S+ D F+ S+ + L K EVL + I+GHTD+ + + Sbjct: 490 SLQDVTGKIHFEPGSATVAAGSSATLDKAAEVLELCGPIRLEIQGHTDSQGREGMNQS-- 547 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 LS RA S L + I G+ +D ANRRI+ V Sbjct: 548 -LSQARAQSILNELRARRIRTSTILA-KGYGESTPIATNDSEEGREANRRIEFKV 600 >gi|327398898|ref|YP_004339767.1| OmpA/MotB domain-containing protein [Hippea maritima DSM 10411] gi|327181527|gb|AEA33708.1| OmpA/MotB domain protein [Hippea maritima DSM 10411] Length = 310 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + P + +++I +L + + + GHTD+ ++ N +LS RA + Sbjct: 208 FDFNKATIKPSSEPTIKEIARLLKENPSLKLYVVGHTDS--IGDLNY-NMKLSKKRAKAV 264 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L+K ++ +R+ G ++ + S NRR++++ Sbjct: 265 VDELVKKYNINPNRLKA-FGVGPLAPVASNKTEEGRSKNRRVELI 308 >gi|157374383|ref|YP_001472983.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316757|gb|ABV35855.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3] Length = 189 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + + + L ++ + L + + G+TDA N +LS RA + Sbjct: 85 FEFAKAEVMFSQWKTLARLKQFLQRFDVNLCLLGYTDAM---GSLDLNQKLSAQRAMAVK 141 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 Q+L++ G S R + G +++ ++NRR++ +V+ Sbjct: 142 QILVEDYGFSSSRFV-VKGMGSESPIASNEKPEGRASNRRVEFVVD 186 >gi|124010476|ref|ZP_01695114.1| immunogenic 75 kDa protein PG4, putative [Microscilla marina ATCC 23134] gi|123982378|gb|EAY23917.1| immunogenic 75 kDa protein PG4, putative [Microscilla marina ATCC 23134] Length = 645 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L ++ +L + + I + HTD+ RN ++ N +LS R+ SA Q L+ Sbjct: 544 IRPDAVKTLDELLVILYRNPKMRIGLSSHTDS---RNTSKYNVQLSQRRSQSALQYLVSR 600 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G+S RI + F +L ++ + NRR ++LV + Sbjct: 601 GISPQRII-VDWFGETKLVTPCPDGVPCNETQHQLNRRTEVLVLE 644 >gi|315223626|ref|ZP_07865480.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287] gi|314946407|gb|EFS98402.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287] Length = 652 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ V L KI EV+ + I IR HTD+ R N LS RA + Sbjct: 543 FDLNKSNIRPDAAVELAKIVEVMKQYPKMKIDIRSHTDS---RATDAYNLALSDRRAKAT 599 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + ++K G+ R+ G+ +L ++ + ANRR + +V Sbjct: 600 LEWIVKQGIDRKRLKA-KGYGETQLVNGCSNGVPCTEEQHQANRRSEFIVVS 650 >gi|256820526|ref|YP_003141805.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582109|gb|ACU93244.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 650 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ V L KI EV+ + I IR HTD+ R N LS RA + Sbjct: 541 FDLNKSNIRPDAAVELAKIVEVMKQYPKMKIDIRSHTDS---RATDAYNLALSDRRAKAT 597 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + ++K G+ R+ G+ +L ++ + ANRR + +V Sbjct: 598 LEWIVKQGIDRKRLKA-KGYGETQLVNGCSNGVPCTEEQHQANRRSEFIVVS 648 >gi|153877096|ref|ZP_02004079.1| OmpA domain protein [Beggiatoa sp. PS] gi|152066440|gb|EDN65921.1| OmpA domain protein [Beggiatoa sp. PS] Length = 155 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 12/118 (10%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 T +FD + S+ E +Q++ + +A I+GHTD+ N LS RA Sbjct: 41 TVLFDTNKSMVKSEYYAEIQQVSDFMAKYPSTSTEIQGHTDS---SGSDDYNLNLSQQRA 97 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANR----RIDILVEDRQG 343 + +VL+ +S R++ + G+ + + NR RI+ +V+ +G Sbjct: 98 DAVLEVLISQFNISPSRLAAV-GYGESQPIADNSTREGRQQNRRVVARIETVVKQIEG 154 >gi|110681204|ref|YP_684211.1| OmpA domain-containing protein [Roseobacter denitrificans OCh 114] gi|109457320|gb|ABG33525.1| OmpA domain protein [Roseobacter denitrificans OCh 114] Length = 625 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + + +I +VL + ++GHTD+ + R LS RA S Sbjct: 497 FEPGSATIDAAALTTMDQIADVLRVCGDLKLEVQGHTDSQGREEMNRS---LSQARAQSV 553 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 L V G+ +D ANRRI+ + + Sbjct: 554 LNELRARRVLTSNFIA-KGYGESNPIADNDTEEGREANRRIEFKLIRPE 601 >gi|77163684|ref|YP_342209.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|254435498|ref|ZP_05049005.1| peptidoglycan-associated lipoprotein, putative [Nitrosococcus oceani AFC27] gi|76881998|gb|ABA56679.1| OmpA/MotB [Nitrosococcus oceani ATCC 19707] gi|207088609|gb|EDZ65881.1| peptidoglycan-associated lipoprotein, putative [Nitrosococcus oceani AFC27] Length = 187 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS + +++ G LA + +++ GHTD R N L RA + Sbjct: 84 FEFDSSEIQQDDRPIVEAHGGYLAKHPDIKVTLEGHTDE---RGSREYNLALGERRANAV 140 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 +++ G SED++ +S + R + + NRR++IL Sbjct: 141 RSLILLMGASEDQVEVVS-YGEERPAVDGQDEGAWQLNRRVEIL 183 >gi|149191535|ref|ZP_01869782.1| protein F-related protein [Vibrio shilonii AK1] gi|148834609|gb|EDL51599.1| protein F-related protein [Vibrio shilonii AK1] Length = 208 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + LQ++ L+ + I GHTD + I N +LS RA S Sbjct: 104 FNTGSAHVASTSAQWLQQLASFLSGQQGIDVVIGGHTDNTGTVAI---NDKLSDKRAESV 160 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 Q L+ V +I G+ + + + + NRR+++ + Sbjct: 161 RQTLISQRV-PRQIIYTRGYGENVPECTNQTQYGKACNRRVELTL 204 >gi|84516651|ref|ZP_01004010.1| peptidoglycan-associated lipoprotein [Loktanella vestfoldensis SKA53] gi|84509687|gb|EAQ06145.1| peptidoglycan-associated lipoprotein [Loktanella vestfoldensis SKA53] Length = 176 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE +L + +L ++ I GH D N L R Sbjct: 65 DRVLFAIDQSTISPEGRTILDGQAQWLLTNADYRAVIEGHADEQ---GTREYNLALGFRR 121 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A + + L+ GV R+ ++ + R +++ S NRR Sbjct: 122 ANAVREYLVSRGVPSARLE-VTSYGKERPIEVCSNEACYSQNRR 164 >gi|262360905|gb|ACY57626.1| hypothetical protein YPD4_0717 [Yersinia pestis D106004] Length = 208 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 76 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 132 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 133 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQ 182 >gi|312114121|ref|YP_004011717.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219250|gb|ADP70618.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 509 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F ++S++ + + + ++ L + + G TD + N LSL+RA S Sbjct: 406 FHRNSAVLDDKAMQDVPRLARFLKSDANGKDLLLLGFTDGT---GAFETNKALSLNRATS 462 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L+ GV ++I+ + G+ SD SANRR+++ Sbjct: 463 FKNALVAEGVPANKIT-VKGYGSLLPVGCNTSDAGQSANRRVEV 505 >gi|347157|gb|AAC36901.1| protein F [Pseudomonas fluorescens] Length = 296 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ P + ++ + + +A + + GHTD+ N +LS RA + Sbjct: 218 FDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV---GPDAYNQKLSQRRADAV 274 Query: 296 YQVLMKSGVSEDRISKISGFA 316 QVL+K GV+ R++ + G+ Sbjct: 275 KQVLVKDGVAPSRVTAV-GYG 294 >gi|238750181|ref|ZP_04611684.1| OmpA domain protein [Yersinia rohdei ATCC 43380] gi|238711725|gb|EEQ03940.1| OmpA domain protein [Yersinia rohdei ATCC 43380] Length = 560 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 234 TPMFDKSSSIPLP--ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 P+FD +SS P +T +L+ + +L + + + I GH+D + N +LS Sbjct: 444 APLFDSNSSKLKPNKQTNDILKSLLYLLEKNPDTKVLIIGHSDNT---GSPSFNMKLSEQ 500 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 RA L+K+ + G +++ NRR+++L+ Q Sbjct: 501 RAQVVGDWLIKNSSIPVNNLIVRGKGALEPIASNNTKIGQDQNRRVEVLLLPTQ 554 >gi|197116693|ref|YP_002137120.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] gi|197086053|gb|ACH37324.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] Length = 204 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 7/114 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 D T FD SS+ L E L + I G+TD R N LS Sbjct: 95 DALETIYFDFDSSLLSDTARATLAANLEKLKAKPGAALRIEGNTDE---RGSDDYNLALS 151 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA SA + L G ++ + G+ + + + + NRR + ++ Sbjct: 152 ERRAQSAKKYLQALGFPASKL-SVVGYGEEKPAVKGEGEEIWAKNRRDEFVIVR 204 >gi|114797292|ref|YP_760148.1| OmpA family membrane protein [Hyphomonas neptunium ATCC 15444] gi|114737466|gb|ABI75591.1| membrane protein, OmpA family [Hyphomonas neptunium ATCC 15444] Length = 544 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNI 280 G I + + +FD PE L ++ L + +++ GHTD++ Sbjct: 419 GAEIRLS-LDSALLFDVGKYEIKPEAESALAELAAQLQTYGADIRVTVEGHTDST---GS 474 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 A N LS +RA S + L I G+ R A++ + NRR+DIL+ Sbjct: 475 AASNQTLSENRARSVWDNLSGKISPVPEDVTIRGYGASRPVADNATEEGRAENRRVDILI 534 Query: 339 EDRQ 342 + Sbjct: 535 LPGK 538 >gi|254512183|ref|ZP_05124250.1| peptidoglycan-associated lipoprotein [Rhodobacteraceae bacterium KLH11] gi|221535894|gb|EEE38882.1| peptidoglycan-associated lipoprotein [Rhodobacteraceae bacterium KLH11] Length = 169 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F + S P+ VLQ + +LA+ V +I GH D N L R Sbjct: 59 DRVLFAVNQSTLSPQAQTVLQGQADWLLANPDFVATIEGHADEQ---GTREYNLALGARR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ +R++ +S + R +++ S NRR Sbjct: 116 ANAAREYLISRGVAGNRLTTVS-YGKERPIEICSTEECYSKNRR 158 >gi|153834734|ref|ZP_01987401.1| inner membrane lipoprotein YiaD [Vibrio harveyi HY01] gi|148868823|gb|EDL67889.1| inner membrane lipoprotein YiaD [Vibrio harveyi HY01] Length = 222 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ + +L + + I G+TD++ N LS RA S Q L+ V+ R Sbjct: 133 LRGVARILVEYPDTSLVIDGYTDST---GSDSYNQTLSERRAESVRQYLVSQNVAPGRAI 189 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G+ + + NRR++I + + Sbjct: 190 A-RGYGERNPICSNQTSEGRACNRRVEIQILPLK 222 >gi|114327495|ref|YP_744652.1| outer membrane protein [Granulibacter bethesdensis CGDNIH1] gi|114315669|gb|ABI61729.1| outer membrane protein [Granulibacter bethesdensis CGDNIH1] Length = 149 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S P +++ +L+ + I + G+TD A+DN LS +RA + Sbjct: 51 FFAPDASQPKTDSLPILKVAVTYAKDHPDQNIIVVGYTDPV---GSAKDNHDLSEERADT 107 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + L+K+G+ + RI+ G + + + RR++I Sbjct: 108 IRKDLIKAGIPQARITA-RGHGQTQPEWNNQES----RRVEI 144 >gi|255533625|ref|YP_003093997.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346609|gb|ACU05935.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 679 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 13/118 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +++ + + ++ L + ++ + I + HTD+ + N LS R Sbjct: 566 KDVLYEFNKADLTEDSKGKLDYLYTIMVDNPTIEIELSSHTDS---KGGEAYNMDLSERR 622 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRRIDILVEDR 341 A S L+ G+ ++R++ G+ R ++ + NRR + V + Sbjct: 623 AKSCVDYLIGKGIPKNRMTS-KGYGKTRPIAPNEFPNGKDNPAGRALNRRTEFKVTKK 679 >gi|172064675|ref|YP_001812325.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|171998160|gb|ACB69076.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 552 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 9/115 (7%) Query: 229 IDQRNTPMFDKSSSIPLPET--IVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 + + +F + PE + + + A+ + + I GH D+ R N Sbjct: 434 VQIDSLSLFASGKATFSPEAAHRELAHALQLIQANPDQRVLIEGHADSE---GSPRANIL 490 Query: 287 LSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 LS RA + L G+S R I G R +S+ + NRR+D+ + Sbjct: 491 LSEARARAIRDWLAAKGGLSVARF-AIQGLGDVRPIADNSSEAGRALNRRVDVSL 544 >gi|117925108|ref|YP_865725.1| OmpA/MotB domain-containing protein [Magnetococcus sp. MC-1] gi|117608864|gb|ABK44319.1| OmpA/MotB domain protein [Magnetococcus sp. MC-1] Length = 322 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVL-QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S + + VL + + H+ + ++GHTD+ R N +LSL RA S Sbjct: 220 FNTGSWELDAKALSVLNAAVATMKQHAAIRVEVQGHTDS---RADDTFNKKLSLKRAESV 276 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + K G++ DR + F +L + NRR+++ Sbjct: 277 IWYMTKQGLARDRFVAAA-FGEQKLLNSEKNSDERLVNRRVEL 318 >gi|83949565|ref|ZP_00958298.1| OmpA domain protein [Roseovarius nubinhibens ISM] gi|83837464|gb|EAP76760.1| OmpA domain protein [Roseovarius nubinhibens ISM] Length = 333 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P L + L I++ GHTDA+ R+I +S RA + Sbjct: 228 FATGSATLGPGPFASLTALAAYLKGDGARRIALVGHTDATGGRDINIS---ISRQRARAV 284 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 L++ GV ++ G + ++ + ANRR++ ++ Q Sbjct: 285 LDRLVEGHGVPRAQLEA-DGVGYLAPIASNLTEAGRQANRRVEAVLLTTQ 333 >gi|332292539|ref|YP_004431148.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170625|gb|AEE19880.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 652 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ + L K+ + + VIS+R HTD+ R N LS RA S Sbjct: 544 FDYNKSDIRPDAALELTKVISAMKQVPDMVISVRSHTDS---RGKDDYNLSLSDRRAKST 600 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 ++ G+ +RIS G+ +L + ++ + NRR + +V + Sbjct: 601 VAYIISRGIDANRISG-QGYGETQLVNSCNNNADCTEEQHQLNRRSEFIVITQ 652 >gi|312959042|ref|ZP_07773561.1| OmpA/MotB [Pseudomonas fluorescens WH6] gi|311286812|gb|EFQ65374.1| OmpA/MotB [Pseudomonas fluorescens WH6] Length = 256 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F +S L + L + I I Sbjct: 97 ESMANTGVEVQRQGDQIKLI-MPGNITFATNSDAISSSFYQPLNNLANSLKQFNQNTIQI 155 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 G+TD++ + N LS RA S L GV+ +S G ++ Sbjct: 156 VGYTDST---GSRQLNMDLSQRRAQSVANYLTSQGVNGANLSA-RGAGPDNPIASNADVN 211 Query: 327 MNSANRRIDI 336 + NRR+++ Sbjct: 212 GRAQNRRVEV 221 >gi|253700147|ref|YP_003021336.1| hypothetical protein GM21_1522 [Geobacter sp. M21] gi|251774997|gb|ACT17578.1| conserved repeat domain protein [Geobacter sp. M21] Length = 1984 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284 I + +FD+ S E +L+ VL E + + GHTD ++ N Sbjct: 1706 ILLTLSGGAFVFDR--SELTLEAKRLLKGAARVLRARPREKVIVEGHTDG--IGSVEY-N 1760 Query: 285 WRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 LS R +A L++ G++ R+ + + R + P NRR+++ Sbjct: 1761 MALSQRRCDAAADYLVREEGIARSRLLR-RWYGKSRPVADNVTSPGRRMNRRVEL 1814 >gi|91224536|ref|ZP_01259798.1| putative outer membrane protein [Vibrio alginolyticus 12G01] gi|269968325|ref|ZP_06182346.1| outer membrane protein, putative [Vibrio alginolyticus 40B] gi|91190878|gb|EAS77145.1| putative outer membrane protein [Vibrio alginolyticus 12G01] gi|269827061|gb|EEZ81374.1| outer membrane protein, putative [Vibrio alginolyticus 40B] Length = 204 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 213 KGVLFETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH 271 +G + G I D +F S P ++++ + L SI H Sbjct: 59 EGSEVDNDGCGEYIKASDNMQVRILFANDSDEINPVFRRQVRELSDFLKEYPTT-SIELH 117 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329 AS N LS RA + + L+ + R+ +I GF L + ++ Sbjct: 118 GYASKVGGSKH-NQDLSERRARNVREALLSYDIEPSRV-RIVGFGDTHLAQQGTDEVSHA 175 Query: 330 ANRRIDILVEDRQG 343 NRR+ V +G Sbjct: 176 LNRRVTASVVGYKG 189 >gi|238782712|ref|ZP_04626742.1| OmpA family protein [Yersinia bercovieri ATCC 43970] gi|238716372|gb|EEQ08354.1| OmpA family protein [Yersinia bercovieri ATCC 43970] Length = 168 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD P +Q IG+ L + GHTDA N +LS R Sbjct: 61 NKVLFDSDVRKLNPSGEQTVQNIGKALTAVGITHFRVDGHTDAM---GEDSYNQQLSYQR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ I + G + + NRR+ ++V Sbjct: 118 AAAVADTLTTIGIPRKNID-VRGRGKLEPVADNRTAKGRAENRRVAMIV 165 >gi|329296508|ref|ZP_08253844.1| outer membrane protein A [Plautia stali symbiont] Length = 356 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G TD + N +LS Sbjct: 228 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSDQY-NQKLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336 RA S L+ G+ ++IS G + D + N RR++I Sbjct: 285 EKRAQSVVDYLVSKGIPANKISA-RGMGESNPVTGNTCDSVKGRNALIDCLAPDRRVEI 342 >gi|260770556|ref|ZP_05879489.1| protein F-related protein [Vibrio furnissii CIP 102972] gi|260615894|gb|EEX41080.1| protein F-related protein [Vibrio furnissii CIP 102972] gi|315181629|gb|ADT88542.1| OmpA family protein [Vibrio furnissii NCTC 11218] Length = 209 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 11/131 (8%) Query: 211 IVKGVLFETTRTG-ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + G+ +E +++ + D FD SS ++ L +G L+ I I Sbjct: 80 LDNGIDYEVMPGNHVMVKLKDTVK---FDTGSSNVSQDSAYWLSVMGSFLSRERGIDIVI 136 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 GHTD + R N LS+ RA L+ V+ D I G+ + + Sbjct: 137 DGHTDNT---GKPRFNDALSVKRAQMVKNTLINKNVARDAIY-TRGYGEYVPACNNGTYE 192 Query: 329 SA--NRRIDIL 337 NRR+++L Sbjct: 193 GRACNRRVELL 203 >gi|255530915|ref|YP_003091287.1| OmpA/MotB domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343899|gb|ACU03225.1| OmpA/MotB domain protein [Pedobacter heparinus DSM 2366] Length = 175 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S + + VL +I + + GH+ A N LS+DRA S Sbjct: 73 FEFNSGVLKTASFEVLDRIAAEMKKDPAVKFVLNGHSS---IEGSAAHNMSLSVDRANSV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 L+ +GVS + I G+ + ++ + NRR++ Sbjct: 130 KLYLVNAGVSAANL-SIKGYGATQPVASNSTEEGKAQNRRVE 170 >gi|89075798|ref|ZP_01162186.1| putative peptidoglycan-associated lipoprotein [Photobacterium sp. SKA34] gi|90580128|ref|ZP_01235936.1| putative peptidoglycan-associated lipoprotein [Vibrio angustum S14] gi|89048530|gb|EAR54105.1| putative peptidoglycan-associated lipoprotein [Photobacterium sp. SKA34] gi|90439013|gb|EAS64196.1| putative peptidoglycan-associated lipoprotein [Vibrio angustum S14] Length = 180 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 7/101 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S PE +L+ L + + GH D R N L RA + Sbjct: 79 FFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADE---RGTPEYNIALGERRANA 135 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 Q L GV ++S +S + + + +D + NRR Sbjct: 136 VAQYLQALGVPASQLSIVS-YGEEKPLVLGHTDADYAKNRR 175 >gi|330719944|gb|EGG98406.1| General secretion pathway protein A [gamma proteobacterium IMCC2047] Length = 141 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLS 288 +R+T + + PE + L I + + + + GHTD+ N R+S Sbjct: 31 ERSTIFYASGRTKLAPEVLEQLDLIIRYVKADKRIKRVVVDGHTDS---AGDKESNIRVS 87 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 RA K+G+S RI A+D + NRR+ I ++ Sbjct: 88 KQRANLVVAYFKKAGISSKRIVM-RWHGDRYPTAANDTDEGQARNRRVTIRLDR 140 >gi|224370138|ref|YP_002604302.1| Pal [Desulfobacterium autotrophicum HRM2] gi|223692855|gb|ACN16138.1| Pal [Desulfobacterium autotrophicum HRM2] Length = 197 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 16/185 (8%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 K E E P + + K++ + + ++ + S L + K Sbjct: 26 KKPVVSEPMGAALEGTVDPDAAAKAAALAKQRAMEEAMLREKALKESALKDAELAKQAAA 85 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASP 276 + T I F S+ P + +L++ L + V + + GH D Sbjct: 86 RSRFTNQNIH---------FAYDSADLTPMSRTLLKEKALWLGENPGVMVVVEGHCDD-- 134 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334 R N L RA+SA + L G++E R+S IS + R ++ + NRR Sbjct: 135 -RGTMEYNLALGDRRAFSAKKFLTDLGIAESRLSTIS-YGEERPIDPANNETAWAKNRRA 192 Query: 335 DILVE 339 +++ Sbjct: 193 QFVIK 197 >gi|160889745|ref|ZP_02070748.1| hypothetical protein BACUNI_02175 [Bacteroides uniformis ATCC 8492] gi|270294032|ref|ZP_06200234.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478785|ref|ZP_07937937.1| OmpA family protein [Bacteroides sp. 4_1_36] gi|156860737|gb|EDO54168.1| hypothetical protein BACUNI_02175 [Bacteroides uniformis ATCC 8492] gi|270275499|gb|EFA21359.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905045|gb|EFV26847.1| OmpA family protein [Bacteroides sp. 4_1_36] Length = 224 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +S+ E L+++ ++L I+I GHTD N ++S +RAY+ Sbjct: 112 LFGFNSAALSNEAKASLRELAQILKEDPTTDIAIIGHTDKV---GTYEANMKVSKNRAYA 168 Query: 295 AYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANRRIDI 336 L GVS + K+ G+ + +++D NRR+++ Sbjct: 169 VENYLQDCGVSPAQFKKVEGVGYNEYDESLSAD----QNRRVEV 208 >gi|300112859|ref|YP_003759434.1| peptidoglycan-associated lipoprotein [Nitrosococcus watsonii C-113] gi|299538796|gb|ADJ27113.1| peptidoglycan-associated lipoprotein [Nitrosococcus watsonii C-113] Length = 187 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS + +++ G LA + I + GHTD R N L RA + Sbjct: 84 FEFDSSEIQQDDRPIVEAHGGYLAKHPDIKIILEGHTDE---RGSREYNLALGERRANAV 140 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 +++ G SE+++ +S + R + + NRR++IL Sbjct: 141 RSLILLMGASEEQVEVVS-YGEERPAVDGQDEGAWQLNRRVEIL 183 >gi|258544708|ref|ZP_05704942.1| outer membrane protein A [Cardiobacterium hominis ATCC 15826] gi|258520045|gb|EEV88904.1| outer membrane protein A [Cardiobacterium hominis ATCC 15826] Length = 201 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD S P LQ + L + I++ GHTD+ + N +LS RA Sbjct: 83 FDFDKSNLKPAGKQALQDLAGQLNQRGANIQKITVVGHTDS---KGTDAYNQKLSERRAS 139 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 + L ++GV ++ + G + + NRR+++ V+ Sbjct: 140 TVANYLAENGV-PSQLIEAYGQGESHPVATNKTAEGRAQNRRVEVNVD 186 >gi|302346547|ref|YP_003814845.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] gi|302150388|gb|ADK96649.1| OmpA family protein [Prevotella melaninogenica ATCC 25845] Length = 653 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 I++ + +D + PE+ L + +L + V I + HTD + A N Sbjct: 478 INVPVLIDNIFYDFDKATLRPESEKALDALVNLLKENPNVTIELSAHTD---YLGSADYN 534 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 RLS RA + L G+ DR++ + G+ R K Sbjct: 535 KRLSQRRADAVVAYLTAHGIVRDRLTPV-GYGKERPK 570 >gi|254506121|ref|ZP_05118265.1| outer membrane protein [Vibrio parahaemolyticus 16] gi|219550939|gb|EED27920.1| outer membrane protein [Vibrio parahaemolyticus 16] Length = 211 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ S ++ VL ++ ++ ++ + + GHTD + N+ L L R+ Sbjct: 108 RVYFNFDQSTLTQQSEYVLTRVIRMVESNSSNLELAGHTDN--VGDAGY-NFSLGLKRSK 164 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 S L+ GV R++ + + + + + D NRR++I Sbjct: 165 SVEDYLIDQGVDPKRVT-TTSYGETKPFVDNMSDENRKLNRRVEI 208 >gi|56698574|ref|YP_168951.1| OmpA domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680311|gb|AAV96977.1| OmpA domain protein [Ruegeria pomeroyi DSS-3] Length = 304 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S L ++ ++L A++ + + GHTD N LS RA + Sbjct: 200 FATGSDALGEGPFDTLAELAQLLSANAELRLVLVGHTDTV---GGLEPNIELSRKRAGAV 256 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 L++ G+ D+IS G + ++ ANRR++ ++ + Sbjct: 257 RARLVEEYGIPADQISA-DGVGYLAPIASNLTPEGREANRRVEAVMLSQ 304 >gi|84685242|ref|ZP_01013141.1| OmpA domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84666974|gb|EAQ13445.1| OmpA domain protein [Rhodobacterales bacterium HTCC2654] Length = 797 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + KI +VL + + I GHTD+ N LS RA S Sbjct: 499 FAPGSVEIEASAAATIDKIADVLRDCAEVPMEIGGHTDSQ---GSEELNKALSQQRANSV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 L+ + I G+ +D NRRI+ + ++ Sbjct: 556 LNALLARRILTSNIVA-HGYGEEVPIADNDTEAGREANRRIEFRLISQR 603 >gi|332286730|ref|YP_004418641.1| OmpA/MotB [Pusillimonas sp. T7-7] gi|330430683|gb|AEC22017.1| OmpA/MotB [Pusillimonas sp. T7-7] Length = 220 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 201 STLSGLVADNIVKGVLFETT---RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 T+ V + + + T + ++I + FD P + VL + Sbjct: 79 KTVKNDVEKSGASSLGVDVTEMPDGTLRVNI---PSNVSFDTGKYALKPALLPVLDSVAR 135 Query: 258 VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA 316 L E G+TD++ A+ N LS++RA + L GV ++ G Sbjct: 136 ALVQHPELRAKSIGYTDST---GSAQVNQTLSVNRARAVANYLSDKGVPVGNLTA-EGRG 191 Query: 317 HHRLK--IASDPMNSANRRIDILV 338 A+ + NRR+++ + Sbjct: 192 PSNPVGDNATAEGRAMNRRVELYL 215 >gi|221134115|ref|ZP_03560420.1| putative outer membrane adhesin like proteiin [Glaciecola sp. HTCC2999] Length = 2282 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 14/117 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS + + K+ + + + I GHTDA + W LS RA Sbjct: 2170 LFAINSSQLTSNDKLEVMKLATFMQTYPDTSVVIEGHTDAR--GTDKYNQW-LSQQRAAV 2226 Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRR----IDIL--VEDRQ 342 ++L+ + ++ +RI I GF +L I + + NRR I I+ VE ++ Sbjct: 2227 VGKLLINQHNIAPERIETI-GFGETQLLIDATTEAQHALNRRTIAEITIIKNVEKKK 2282 >gi|83591777|ref|YP_425529.1| OmpA family protein [Rhodospirillum rubrum ATCC 11170] gi|83574691|gb|ABC21242.1| OmpA family protein [Rhodospirillum rubrum ATCC 11170] Length = 340 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ PE ++ + I + GH D N LS RA + Sbjct: 238 FFDFDSTSITPEAGGIINTAATNAKSTGSSTIEVTGHADR---SGGDAYNLALSKRRAEA 294 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 L ++G+S +I + + + NRR+ ++++ Sbjct: 295 VVGELERNGISRSQI-AVYAKGEADPLVPTPDGVREPQNRRVVVVLK 340 >gi|88800697|ref|ZP_01116256.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Reinekea sp. MED297] gi|88776561|gb|EAR07777.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Reinekea sp. MED297] Length = 294 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD L I L + I + GH+D+ DN RLS RAY Sbjct: 173 FDGGGDGLDARARSQLDDIVTYLKADPLITAIYVDGHSDSV---GTRYDNRRLSERRAYR 229 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L+ +G+ I +++ + NRR+ + Sbjct: 230 VTDYLVNAGIDAAMIL-TRYHGERYPIASNETAAGRAQNRRVTL 272 >gi|159045040|ref|YP_001533834.1| hypothetical protein Dshi_2499 [Dinoroseobacter shibae DFL 12] gi|157912800|gb|ABV94233.1| hypothetical protein Dshi_2499 [Dinoroseobacter shibae DFL 12] Length = 240 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283 I+ T +FD S+ E ++ I E L + + + G+TDA Sbjct: 32 IAQAQDLGTVLFDFDSASLDAEAATQVRAIAEALEATPSYKPTIVVGYTDAV---GSTGY 88 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 N L RA + L GV RI I+ L +A NRR+++ ++D Sbjct: 89 NLALGQRRAQTVADALTAQGVPVSRIGSIASRGESDLVVAVATAERRNRRVNVALDD 145 >gi|150024643|ref|YP_001295469.1| OmpA family outer membrane protein [Flavobacterium psychrophilum JIP02/86] gi|149771184|emb|CAL42651.1| Probable outer membrane protein, OmpA family [Flavobacterium psychrophilum JIP02/86] Length = 284 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ ++ L ++ V+ E +ISI GH LS RA + Sbjct: 181 FITNTFAVTNDSRGKLYELLLVMQQRPEMIISIHGHLCCVSVDRK-----DLSTQRAKAV 235 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDI-LVED 340 Q L +G+ + R+ GF ++ +ANRR++I ++E+ Sbjct: 236 KQFLELNGIEKTRMD-FKGFGSSIPLFPLPENTEEERAANRRVEIEVIEN 284 >gi|330502404|ref|YP_004379273.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] gi|328916690|gb|AEB57521.1| OmpA/MotB domain-containing protein [Pseudomonas mendocina NK-01] Length = 217 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 LP ++ + ++ ++L + + GH D+ A N LS RA + + S Sbjct: 85 LLPASLGPITRVAKLLETDEDIAVVVLGHADS---SGDAALNRDLSQQRARAVTSIFRLS 141 Query: 303 GVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 G+ + R+ ++ G + A+D + NRR++IL+ R Sbjct: 142 GLKQSRL-QVMGLGSDMPRAANDSAAGRALNRRVEILLTSR 181 >gi|260773875|ref|ZP_05882790.1| protein F-related protein [Vibrio metschnikovii CIP 69.14] gi|260610836|gb|EEX36040.1| protein F-related protein [Vibrio metschnikovii CIP 69.14] Length = 208 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S++ ++ L ++G LA++ + I I GHTD + R N LS+ RA + Sbjct: 103 FQTGSAVVPSASVQWLAQLGRYLANTPQIDIVIEGHTDNT---GTERFNDGLSMRRADTV 159 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL-VEDRQ 342 +L++ VS I G+ H + + NRR+++L + D Q Sbjct: 160 KNILLEQQVSLAAIY-TRGYGEHTPACTNQTSQGRACNRRVELLMIMDSQ 208 >gi|77457455|ref|YP_346960.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77381458|gb|ABA72971.1| putative outer membrane protein [Pseudomonas fluorescens Pf0-1] Length = 364 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 79/214 (36%), Gaps = 14/214 (6%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+ + + E + +K + K++ M K Sbjct: 72 PFGSDDSAAAKPEVKAEAKPEAKPVEVAKAEADKGGKWWWPFGGKEQDTAKVVPMPDPKV 131 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS-SIPLPETIV 250 Q L + D+ ++ E + ++ F+ ++ LP T+ Sbjct: 132 TQAWLDDYEPRLRTAIKDSNLQLERREN------VLVVTAPVEGSFNPDRPAMLLPVTLG 185 Query: 251 VLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 ++ ++L + + + GH+D + A N +LS +RA + + SG+ DR+ Sbjct: 186 PFTRVAKILEADPKTAVLVLGHSDTT---GAAPANVKLSQERAQAVAAIFRLSGLQRDRL 242 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + G + A+D + NRR+++LV + Sbjct: 243 M-LRGMGSEAPRAANDSVEGRALNRRVELLVTPQ 275 >gi|322417875|ref|YP_004197098.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18] gi|320124262|gb|ADW11822.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18] Length = 198 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 D FD S + L L I + G+ D R N LS Sbjct: 89 DALEKIYFDFDSDLLSDAARKTLTDNFVKLKAMPNVKIRVEGNCDE---RGSDEYNLALS 145 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 RA +A + L GV R+S I G+ + + SD + NRR Sbjct: 146 ERRAQAAVKYLTALGVPASRLSAI-GYGEEKPADSGHSDDAWARNRR 191 >gi|49476137|ref|YP_034178.1| peptidoglycan-associated lipoprotein [Bartonella henselae str. Houston-1] gi|49238945|emb|CAF28242.1| Peptidoglycan-associated lipoprotein [Bartonella henselae str. Houston-1] Length = 174 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS P+ +L + E L I I GH D R N L R Sbjct: 64 DRVFFSLDSSSIEPDAEAILMRQAEWLLRYPFYSIVIEGHADE---RGTREYNLALGQRR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A + L+ GVS RI IS + R D ++ + NRR Sbjct: 121 AVAVRNYLISLGVSAQRIQTIS-YGKERPVAVCDDISCWNQNRR 163 >gi|295690756|ref|YP_003594449.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432659|gb|ADG11831.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756] Length = 189 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNW 285 ++ ++ F +++ PE L + E L + + I+GHTD N Sbjct: 77 LVLSDDSVKFPVNAATLSPEAEQRLSEFTEKLKADNKNVYLEIQGHTDN---SGSKEYND 133 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L RA + + L + GV+ +R++ IS + ++ + NRR+ ++V Sbjct: 134 ELGEKRAETVRKFLSQHGVALNRMATIS-YGQEAPVAPNETREGRAQNRRVVVMVLS 189 >gi|269102192|ref|ZP_06154889.1| sodium-type flagellar protein MotY precursor [Photobacterium damselae subsp. damselae CIP 102761] gi|268162090|gb|EEZ40586.1| sodium-type flagellar protein MotY precursor [Photobacterium damselae subsp. damselae CIP 102761] Length = 297 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D S + L +I + + + +V + + +TD+ +N LS RA Sbjct: 192 YDNDSEELNELSRKRLMQIADFVRAAKDVDLVLVATYTDSF---GTKNENQDLSERRANK 248 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 ++ + G+ DRI K+ F R ++ + NRR+ I + Sbjct: 249 LHEYFISLGLPPDRI-KVQAFGERREIADNNTPIGRNLNRRVVISL 293 >gi|269968606|ref|ZP_06182608.1| hypothetical protein VMC_40380 [Vibrio alginolyticus 40B] gi|269826817|gb|EEZ81149.1| hypothetical protein VMC_40380 [Vibrio alginolyticus 40B] Length = 288 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 25/210 (11%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI-----SIIDQRNTPMFDKSSSIPLPETIVVLQ 253 + LS E R+ + I ++++ N F S+ P+ + L Sbjct: 129 LDYVLSQTTCTPPDD---IEALRSDLNIVSDIYALLNIDNQ--FAVDSAEINPKYMGHLA 183 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-- 310 + +L + + GH DA+ N +L+ RA + L G++ +R++ Sbjct: 184 EAAYILRDHPNLSLVVTGHADAT---GTPDYNQKLAQARAEQVKRYLTVFGITSERVTTK 240 Query: 311 KISGFAHHRLKIASDPMNSA--NRRIDILV 338 + + + NRR+ I V Sbjct: 241 SV---GDNLPLYEGETPAVRLTNRRVSIEV 267 >gi|261210344|ref|ZP_05924639.1| outer membrane protein A precursor [Vibrio sp. RC341] gi|260840571|gb|EEX67132.1| outer membrane protein A precursor [Vibrio sp. RC341] Length = 293 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L + + +V V + + + +F +SS + + Sbjct: 152 LTYRFGQPETPMVIREEVPVEVIREVEVAQDVVRQEFVGEKLFAFNSSELKA-SSSLDMM 210 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 + ++A+ + +++ GH+D+ N LS RA + + + +G+ RI+ + G Sbjct: 211 MDALMANESLSLTLEGHSDSV---GSEEYNQALSERRAQAVAEYFILNGIDASRIT-VMG 266 Query: 315 FAHHRLKIASDP--MNSANRRIDIL 337 ++D + NRR+ + Sbjct: 267 KGSQEPVASNDSDIGRAQNRRVVLF 291 >gi|58039713|ref|YP_191677.1| Outer membrane protein [Gluconobacter oxydans 621H] gi|58002127|gb|AAW61021.1| Outer membrane protein [Gluconobacter oxydans 621H] Length = 370 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD---ASPFRNIARDNWRLSLDR 291 FD S+ V+ I + G+TD A P N LS R Sbjct: 262 FFDWDSAELSTRAKAVVAAAARNSTSVQVTHIEVSGYTDTSAAHPGHRGEAYNMALSQRR 321 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 A + + L++ GV+ I+ GF + A++ NRR++I Sbjct: 322 ANTVKEELVRDGVAAGLIT-TQGFGESHPLVVTAANTREPQNRRVEI 367 >gi|99078059|ref|YP_611317.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99035197|gb|ABF62055.1| OmpA/MotB [Ruegeria sp. TM1040] Length = 653 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 7/110 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 I + + F+ S+ ++ V+ KI ++L E + I+GHTD+ N L Sbjct: 491 IQRADKIAFEPGSATVAADSARVIDKIAKLLQQCGEIPLEIQGHTDSQ---GREEMNQNL 547 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 S RA S L + G+ ++D ANRRI+ Sbjct: 548 SQARAQSVLNALRARRILTGSFVA-RGYGEDNPIASNDTEEGREANRRIE 596 >gi|329114380|ref|ZP_08243142.1| Outer membrane protein [Acetobacter pomorum DM001] gi|326696456|gb|EGE48135.1| Outer membrane protein [Acetobacter pomorum DM001] Length = 452 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD----NWRLSLD 290 FD S ++ + AH I++ G+TD S + N RLSL Sbjct: 343 FFDWDKSDLTDRARSIVGVAAQAAAHVALTRITVSGYTDNSSAHPGQKAGEEYNMRLSLR 402 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 RA LM+ GV I I G+ + + P + NRR++I+ Sbjct: 403 RAEVVKAELMRDGVPGTTID-IHGYGETHPLVTTGPNTKEAQNRRVEII 450 >gi|258541844|ref|YP_003187277.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01] gi|256632922|dbj|BAH98897.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01] gi|256635979|dbj|BAI01948.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-03] gi|256639034|dbj|BAI04996.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-07] gi|256642088|dbj|BAI08043.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-22] gi|256645143|dbj|BAI11091.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-26] gi|256648198|dbj|BAI14139.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-32] gi|256651251|dbj|BAI17185.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654242|dbj|BAI20169.1| outer membrane protein OmpA [Acetobacter pasteurianus IFO 3283-12] Length = 411 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD----NWRLSLD 290 FD S ++ + AH I++ G+TD S + N RLSL Sbjct: 302 FFDWDKSDLTDRARSIVGVAAQAAAHVALTRITVSGYTDNSSAHPGQKAGEEYNMRLSLR 361 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 RA LM+ GV I I G+ + + P + NRR++I+ Sbjct: 362 RAEVVKAELMRDGVPGTTID-IHGYGETHPLVTTGPNTKEAQNRRVEII 409 >gi|326799502|ref|YP_004317321.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] gi|326550266|gb|ADZ78651.1| OmpA/MotB domain protein [Sphingobacterium sp. 21] Length = 647 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 12/105 (11%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + V+L + +++ + I + HTD+ R + N LS RA +A L+ Sbjct: 546 IRKDAAVILDGLVKIMKDNPTLKIELSSHTDS---RGRDKYNMTLSQKRAQAAVDYLVSR 602 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++ DR+ G+ +L S+ + NRR + V + Sbjct: 603 GIARDRMIA-KGYGESKLLNRCANGIKCSEAEHQLNRRTEFTVLE 646 >gi|332161206|ref|YP_004297783.1| hypothetical protein YE105_C1584 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665436|gb|ADZ42080.1| hypothetical protein YE105_C1584 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 558 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286 + PMFD +S P + + +L H + I GH+D + A N Sbjct: 439 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 494 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +S RA L+K+ I G ++D NRR+++L+ Sbjct: 495 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 550 >gi|318605099|emb|CBY26597.1| putative OMPA family outer membrane porin precursor [Yersinia enterocolitica subsp. palearctica Y11] Length = 556 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286 + PMFD +S P + + +L H + I GH+D + A N Sbjct: 437 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 492 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +S RA L+K+ I G ++D NRR+++L+ Sbjct: 493 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 548 >gi|123442919|ref|YP_001006894.1| hypothetical protein YE2703 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089880|emb|CAL12736.1| putative membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 556 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286 + PMFD +S P + + +L H + I GH+D + A N Sbjct: 437 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 492 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +S RA L+K+ I G ++D NRR+++L+ Sbjct: 493 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 548 >gi|330861523|emb|CBX71733.1| putative lipoprotein yfiB [Yersinia enterocolitica W22703] Length = 169 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++ F+ T G + + N +FD + +Q IG L + + + Sbjct: 43 ALQEQGFKLTDNGWVFGLT---NKVLFDSDVRKLNASGVQTVQNIGRALHNVGINHMRVD 99 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 G+TDA N +LS RA + L G+ I + G + Sbjct: 100 GYTDAI---GEDGYNQQLSFQRASAVADTLAAIGIPRANIE-VRGRGKLEPVADNRTAKG 155 Query: 328 NSANRRIDILV 338 + NRR+ I+V Sbjct: 156 RAENRRVAIIV 166 >gi|257453916|ref|ZP_05619193.1| inner membrane lipoprotein YiaD [Enhydrobacter aerosaccus SK60] gi|257448688|gb|EEV23654.1| inner membrane lipoprotein YiaD [Enhydrobacter aerosaccus SK60] Length = 216 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 9/145 (6%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + L A+ GV I++ F S LP L K+ Sbjct: 77 MQQQEAKLRAETAGSGVTVTRDPVTNNINLS-IPEAITFRVGDSTILPNFYNTLDKVATT 135 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + I + G+ A N LS RA + L+ G+S +RIS I A Sbjct: 136 LRDYNQTNIQVNGYAS---VEGDANRNQALSQRRASAVANYLVNRGISGNRISAIGRGAT 192 Query: 318 HRLKIASDPMNSANRRIDILVEDRQ 342 + + +P NRR+++++ Q Sbjct: 193 TQFGSSYEP----NRRVEMIILAPQ 213 >gi|89890715|ref|ZP_01202224.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89516860|gb|EAS19518.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 368 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%) Query: 238 DKSSSIPLPETIVVLQ-KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 SS + K+ VL ++ + + HTD+ R N LS RA S Sbjct: 260 ATGSSTLTAADKAEIDAKLLSVLNNTPGSKVEVASHTDS---RGSKTSNQALSERRAQSV 316 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRR 333 L+ G++ RI +G+ +RLK ++ + ANRR Sbjct: 317 ANYLISKGINNSRIVA-NGYGENRLKNRCADGVSCTEREHKANRR 360 >gi|167623118|ref|YP_001673412.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353140|gb|ABZ75753.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 199 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + + L L+ I L + + + GHTD+ + A N +LS +RA Sbjct: 96 FEFARADVLLSQAQTLEVIARWLKSTGGDLLLVGHTDS--VGSPAY-NLQLSFERAEQVK 152 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 VL++ G+ R ++ G + NRR++ LV Sbjct: 153 NVLVEQFGLLASRF-QVVGVGSAEPIADNRTRQGREQNRRVEFLV 196 >gi|319951894|ref|YP_004163161.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319420554|gb|ADV47663.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 647 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + ++++K+ L I I HTDA N A ++ RLS RA + Sbjct: 540 FDFDQSYIRKDAQIIMEKVIAYLNQYPNTKIRIGSHTDA--IANDAYNS-RLSERRAKAT 596 Query: 296 YQVLMKSGVSEDRISKISGFAHHRL-------KIASDPMNSANRRIDILV 338 Y+ L+K G++ R++ GF +L S + NRR + +V Sbjct: 597 YEYLVKKGIAASRLT-FKGFGETQLNNECKNTVNCSAEKHQLNRRSEFIV 645 >gi|189461399|ref|ZP_03010184.1| hypothetical protein BACCOP_02054 [Bacteroides coprocola DSM 17136] gi|189431928|gb|EDV00913.1| hypothetical protein BACCOP_02054 [Bacteroides coprocola DSM 17136] Length = 239 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 266 ISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 ++I G+TD + ++N + N LS RA S L+ GVS +I + G Sbjct: 144 VAIYGYTDNTGWKNSTAEQSVQKNQELSQARAQSVSSYLLGCGVSASQIKTVEGMGESNP 203 Query: 321 KIASDPMNSA--NRRIDI 336 + NRR+++ Sbjct: 204 VADNSTEAGRKENRRVEV 221 >gi|225012476|ref|ZP_03702912.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225003453|gb|EEG41427.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 322 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 7/114 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 I +N +F SSS+ L+K+ +L I I GHT A N + Sbjct: 211 IKSNQNKILFKASSSVLDKGGRATLEKVKMLLNTYQNTAIIIEGHTSTD---GSASYNQK 267 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS RA + L+ + RIS I G+ ++ + + +RR I + Sbjct: 268 LSEQRASAIKDYLISQTIDASRISTI-GYGENQPIGDNKTVKGRAESRRAKIKI 320 >gi|317152528|ref|YP_004120576.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942779|gb|ADU61830.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 352 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F E I VL++ +L + I GHTD++ N LS RA S Sbjct: 251 FGFDKYQITDEMIPVLEQAKIILDENPSASYIIAGHTDST---GPDAYNQGLSERRAGSV 307 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + ++ +GV+ R+ G+ K + NRR++I Sbjct: 308 REWMVANGVNTSRLES-KGYGELSPKYDNATSEGRKLNRRVEI 349 >gi|257460460|ref|ZP_05625561.1| putative chemotaxis protein MotB [Campylobacter gracilis RM3268] gi|257441791|gb|EEV16933.1| putative chemotaxis protein MotB [Campylobacter gracilis RM3268] Length = 340 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 122/337 (36%), Gaps = 50/337 (14%) Query: 33 WKIVYADFMTVLMAFFLVM--------WIINATDDDTKKAIEQYFNPFGKNLMTASKGIF 84 W I YAD M L+ F+++ ++ + + + I +++ Sbjct: 12 W-IAYADLMAGLLFVFVLLVGGIIVKYFLTQSNLQEKESQISSALASLQSQEKKSAE--L 68 Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 + N K+++ + +NS+ + + + N+ S Q++ Sbjct: 69 EALNKIFSDQLEKLNIENTDLRKQNSIYFIQIEDLTEMAEKLKKENLDINSLLQKAREDA 128 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 N+ +E K L + K+E+ F L + + + L + KI + L Sbjct: 129 NATISQNE-----LKIAFLLDQLTKKESDFNKILQDLNVTKNRIRN-LTGMKVKIIADL- 181 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-----IGEVL 259 + + + + + +S ++ +FDK SS L+ +L Sbjct: 182 ---KEKLGGKIRIDNESGAMTLS-----SSILFDKGSSELKEGAKETLRSTLQSYFAALL 233 Query: 260 AHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK--- 311 + I I GHTD+ N LS +RA++ + S ++R+ K Sbjct: 234 NNDEIRENLDQIIIEGHTDS---DGGYLYNLELSQNRAFAVMD-FINSWNKDERLQKYLI 289 Query: 312 ISGFAHHRLKIA---SDPMNSANRRIDI--LVEDRQG 343 SG ++ + + D S RRI+I + +++ Sbjct: 290 ASGRSYTQPVMRRGVEDKDAS--RRIEIKFTLSNKEA 324 >gi|86139070|ref|ZP_01057641.1| OmpA domain protein [Roseobacter sp. MED193] gi|85824301|gb|EAQ44505.1| OmpA domain protein [Roseobacter sp. MED193] Length = 640 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + VVL I +L + I+GHTD+ N LS RA S Sbjct: 500 FEPGSATVAGGSSVVLDHIASILEKCGPIRLEIQGHTDSQ---GREGMNQALSQSRAQSI 556 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 L + I G+ + ++D ANRRI+ Sbjct: 557 LNELRARRIRTSAFIAI-GYGESQPIASNDSEEGREANRRIE 597 >gi|288818260|ref|YP_003432608.1| hypothetical protein HTH_0948 [Hydrogenobacter thermophilus TK-6] gi|288787660|dbj|BAI69407.1| hypothetical protein HTH_0948 [Hydrogenobacter thermophilus TK-6] gi|308751857|gb|ADO45340.1| OmpA/MotB domain protein [Hydrogenobacter thermophilus TK-6] Length = 334 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E I +L ++ + L + + I G+TD A ++ +L++ RA + Sbjct: 228 FDFDKYSIKREYIPLLNEVVKTLKENPNVRVRIEGYTDN--IGTKAYND-KLAMKRAKAV 284 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+K G+ E RI + GF R +++ NRR D ++ Sbjct: 285 KDYLVKHGIEESRIDTV-GFGKERYIASNETAIGRFTNRRADFIILR 330 >gi|73541910|ref|YP_296430.1| OmpA/MotB [Ralstonia eutropha JMP134] gi|72119323|gb|AAZ61586.1| OmpA/MotB [Ralstonia eutropha JMP134] Length = 186 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F P+ I ++++G VL + + + GHTD + N RLSL RA Sbjct: 80 KVLFGFDEDAIPPDRIADIRRLGGVLLGVGIDHVRVDGHTDHT---GSTEYNLRLSLRRA 136 Query: 293 YSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 + +VL+ +G I + G + + NRR I+V Sbjct: 137 EAVARVLVTAGFEPANIELRGMGKGRPVADNRTAAGRAENRRASIVV 183 >gi|257454195|ref|ZP_05619465.1| outer membrane protein, OmpA/MotB family [Enhydrobacter aerosaccus SK60] gi|257448368|gb|EEV23341.1| outer membrane protein, OmpA/MotB family [Enhydrobacter aerosaccus SK60] Length = 172 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 7/109 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 NT F SS + VL + + L + ++I GHTD R N L Sbjct: 66 NPNTVYFGFDSSEIDAQGQAVLNQQAQFLQANPSARVAIAGHTDE---RGSREYNLALGE 122 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 RA +A L SGVS R+ IS + + + + NRR +I Sbjct: 123 RRAQAAQAYLATSGVSASRMEAIS-YGEDQPADPGHDESAWAKNRRAEI 170 >gi|300024878|ref|YP_003757489.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526699|gb|ADJ25168.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 387 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++ S+ P + L + L + V+ +RG TD+ + N LS RA Sbjct: 284 FNEDSAAIAPASRTALSALVTALKACAGVVVEVRGFTDSV---GSSEGNQMLSELRAKKI 340 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L K+GV +++ + G ++ NRR++ ++ Sbjct: 341 VDFLTKAGVEASKLTAV-GKGEDDPVADNETPEGRRLNRRVEFVL 384 >gi|149371350|ref|ZP_01890836.1| OmpA/MotB [unidentified eubacterium SCB49] gi|149355488|gb|EDM44047.1| OmpA/MotB [unidentified eubacterium SCB49] Length = 247 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Query: 252 LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L KI L + ++ + I GHTD+ N LSL RA + + + + RI Sbjct: 161 LDKIVSYLKNDPQITVKITGHTDSI---GSDNFNKSLSLKRANAVKRYFLSKKIDTRRII 217 Query: 311 KISGFAHHRLKIASDPMNSANRRIDI 336 I+G K + S NRR++I Sbjct: 218 -INGMGEKSPKSK---LASQNRRVEI 239 >gi|86139145|ref|ZP_01057715.1| peptidoglycan-associated lipoprotein [Roseobacter sp. MED193] gi|85823989|gb|EAQ44194.1| peptidoglycan-associated lipoprotein [Roseobacter sp. MED193] Length = 166 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S P +LQ L + + ++I+GH D R N L R Sbjct: 56 DRVLFLVDQSTLNPAAETILQGQARWLTANPDYTVTIQGHADEQGTRIY---NLALGERR 112 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A SA + L+ G+S RI ++ + R +++ + NRR Sbjct: 113 ANSAREYLISQGISSSRI-QVVSYGKERPLEICSAESCYAKNRR 155 >gi|83943919|ref|ZP_00956376.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. EE-36] gi|83954492|ref|ZP_00963203.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. NAS-14.1] gi|83840776|gb|EAP79947.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. NAS-14.1] gi|83845166|gb|EAP83046.1| peptidoglycan-associated lipoprotein [Sulfitobacter sp. EE-36] Length = 174 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE L L ++ I GH D N L R Sbjct: 64 DRVLFLVDQSNLTPEGQATLDGQAAWLNTNTDYQAVIEGHADEQ---GTREYNLALGARR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ G++ R+ ++ + R +S+ + NRR Sbjct: 121 ANAAREYLISRGIAASRL-RVVSYGKERPIEVCSSEACYAKNRR 163 >gi|301328313|ref|ZP_07221421.1| OmpA family protein [Escherichia coli MS 78-1] gi|300845245|gb|EFK73005.1| OmpA family protein [Escherichia coli MS 78-1] Length = 188 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + ++G TR+G I I++ N FD SS+ P L + VL Sbjct: 83 VQEAKLRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY 141 Query: 263 TE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + +++ G+TD++ ++ N RLS RA S L GV RI Sbjct: 142 PKTAVNVIGYTDSTGGHDL---NMRLSQQRADSVASALTPQGVDASRI 186 >gi|114771185|ref|ZP_01448605.1| OmpA/MotB family protein [alpha proteobacterium HTCC2255] gi|114548110|gb|EAU50997.1| OmpA/MotB family protein [alpha proteobacterium HTCC2255] Length = 163 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +T +F S E +L K E L ++ I+I GH D + N L R Sbjct: 53 DTVLFLVDQSSLTAEATDLLNKQAEWLLNNPNKSITIEGHADET---GTREYNLALGARR 109 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A S L+ G+++ RI+ ++ F R + + S NRR Sbjct: 110 AASVQNYLVSRGLTDSRINTVT-FGKERPLAICSDEACWSKNRR 152 >gi|325067556|ref|ZP_08126229.1| OmpA/MotB domain protein [Actinomyces oris K20] Length = 336 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + VL + E + ++I GH D N LS RA + Sbjct: 50 FATDSDQLSAQADSVLATVVEQIKKYPSGGELTITGHIDDVA---DDAHNQDLSERRAKA 106 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + L K +SG ++A+D NRR++I + + Sbjct: 107 VSERLKKLTDLSAWKESVSGKGESSPRVANDTDEHRQINRRVEITLTPSK 156 >gi|308050039|ref|YP_003913605.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307632229|gb|ADN76531.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 296 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Query: 241 SSIPLPETIVV--LQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 S LP T + L I +A + + GHTD N LS DRA Sbjct: 183 SGQLLPNTAQLNQLSDIAAYVAADPRITEVLVDGHTDNV---GDHLANLALSRDRADEVG 239 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342 +L + G+S DRI ++ G ++++ NRR+ I LV D Q Sbjct: 240 ALLHERGISRDRI-QVRGHGERYPLLSNNNAQGRQHNRRVTIRLVRDGQ 287 >gi|121725841|ref|ZP_01679141.1| OmpA family protein [Vibrio cholerae V52] gi|147672308|ref|YP_001215442.1| OmpA family protein [Vibrio cholerae O395] gi|121631606|gb|EAX63974.1| OmpA family protein [Vibrio cholerae V52] gi|146314691|gb|ABQ19231.1| OmpA family protein [Vibrio cholerae O395] gi|227015278|gb|ACP11487.1| protein F-related protein [Vibrio cholerae O395] Length = 207 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + ++ S++ L + G+ E +I NT F+ S+ + L Sbjct: 62 MTQQRSASYEDLRQYLLSNGIQHEVVPGDY--PMIKLNNTVRFETGSAKVSMASKQWLDT 119 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + LA + I + GHTD + + N +L+ RA + L++S V+++ I Sbjct: 120 VARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAVKAALVQSRVAQNAIY-TR 175 Query: 314 GFAHHRLKIASDPMNSA--NRRIDI 336 GF + + N NRR++I Sbjct: 176 GFGENVPACTNSTKNGRACNRRVEI 200 >gi|262168510|ref|ZP_06036206.1| protein F-related protein [Vibrio cholerae RC27] gi|262023039|gb|EEY41744.1| protein F-related protein [Vibrio cholerae RC27] Length = 204 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + ++ S++ L + G+ E +I NT F+ S+ + L Sbjct: 59 MTQQRSASYEDLRQYLLSNGIQHEVVPGDY--PMIKLNNTVRFETGSAKVSMASKQWLDT 116 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + LA + I + GHTD + + N +L+ RA + L++S V+++ I Sbjct: 117 VARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAVKAALVQSRVAQNAIY-TR 172 Query: 314 GFAHHRLKIASDPMNSA--NRRIDI 336 GF + + N NRR++I Sbjct: 173 GFGENVPACTNSTKNGRACNRRVEI 197 >gi|319953635|ref|YP_004164902.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319422295|gb|ADV49404.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 642 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 9/220 (4%) Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 S + K + D+ +K + + ++ + + S+T E G L + Sbjct: 395 FSSNREGGKGNDDIYGFKVAEKPGLKTIVIKGIVVNPANDKGIEEASITLFDENGNILKQ 454 Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNI-VKGVLFE 218 S + E F + + + + L ++ + ++ + + + E Sbjct: 455 SISGVDGDYQFEIPFRKEYAVKAFKKGHGRFYQEFLQEQGAKAVTQNLKIGLPFIQDVVE 514 Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF 277 + +I + F K S P L K+ V+ + E + + HT++ Sbjct: 515 EKESKTVIKLQ----KFYFSKGKSTITPAIAAELDKVAAVVVNFPEIQLKVESHTNS--- 567 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 R N LS DRA + + L+ GVS + + + G+ Sbjct: 568 RGSGASNLSLSQDRASAVRKYLLSKGVSSENVVEYIGYGE 607 >gi|149191161|ref|ZP_01869419.1| hypothetical protein VSAK1_02239 [Vibrio shilonii AK1] gi|148834999|gb|EDL51978.1| hypothetical protein VSAK1_02239 [Vibrio shilonii AK1] Length = 305 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + + I ++ I I G+TD + N ++S R Sbjct: 201 FQSGAVALTELQKRTIGDISSLVKRDPKIVKILIDGYTDN---SGDSVANLQISKQRGSD 257 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 Q +++GVS ++ +I G K ++ NRR++I + + Sbjct: 258 VAQWFVENGVS-KKMIEIRGHGDRYPKYDNTTEEGRDKNRRVEIRLVRK 305 >gi|85705019|ref|ZP_01036119.1| OmpA domain protein [Roseovarius sp. 217] gi|85670341|gb|EAQ25202.1| OmpA domain protein [Roseovarius sp. 217] Length = 311 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P L+ + L +++ GHTD++ N LS RA + Sbjct: 204 FGSGDNALGPGPHPSLEALAAYLLTKPNTRVALVGHTDST---GGLEGNIALSRSRAEAV 260 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 VL + GV ++ G + + + NRR++ ++ D Sbjct: 261 LSVLTEIHGVPATQLEA-HGIGYLAPLAPNTTGDGRESNRRVEAVLLD 307 >gi|297579202|ref|ZP_06941130.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536796|gb|EFH75629.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 212 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 7/107 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q+ +F SS P + ++++ E L I ++G+ A N LS Sbjct: 87 QQLHILFANDSSSIEPAFLTQIRQMAEFLQTYPSTSIELQGYASKV---GSAEHNLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 R+ + L++ GV+ +R++ I G+ L+ D ++ NRR+ Sbjct: 144 QRSEAVRDQLLRYGVAPERVN-IVGYGDSVLEAEGTDDVSHARNRRV 189 >gi|115522932|ref|YP_779843.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516879|gb|ABJ04863.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 219 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ + + + +G+ L++ + GHTDA N LS RA Sbjct: 110 FDYNSANISAKALKAVDALGKALSNPDLKGSTFVVAGHTDAV---GSEPYNQDLSERRAD 166 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L+ G++ + + G+ +LK AS P NRR+ ++ Sbjct: 167 AIKRYLVDKFGIAGTDLVTV-GYGESKLKDASAPTAGVNRRVQVV 210 >gi|325267033|ref|ZP_08133703.1| OmpA family protein [Kingella denitrificans ATCC 33394] gi|324981533|gb|EGC17175.1| OmpA family protein [Kingella denitrificans ATCC 33394] Length = 240 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 8/115 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARD 283 + + +F PE I L ++ L S + GHTD F + Sbjct: 99 RTETVSLNSNFLFGFDKDTLRPEAIETLNQLAARLGDSNVQSARVEGHTD---FMGSEQY 155 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRID 335 N LS RA L++ GV +IS +G + ++ + N RR+ Sbjct: 156 NQALSERRATRVANYLVERGVPASKISA-AGLGESQARMTASCQAEVNKLGRRVS 209 >gi|257057431|ref|YP_003135263.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Saccharomonospora viridis DSM 43017] gi|256587303|gb|ACU98436.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Saccharomonospora viridis DSM 43017] Length = 223 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ ++ + ++L + I GH P +LS +RA + Sbjct: 122 FAADSANLDAAGRQAVKNVADLLTEAPTDWRFEIAGHVARVPGAEPE-SARKLSYERAEA 180 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + L+KSG+S DR+ + G+ R + +S +RR++I V Sbjct: 181 VAEELVKSGLSPDRVEPV-GYGATRPL-SDSGTSSIDRRVEITV 222 >gi|86142769|ref|ZP_01061208.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] gi|85830801|gb|EAQ49259.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] Length = 622 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 92/314 (29%), Gaps = 32/314 (10%) Query: 54 INATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDL 113 +N+ + I + N + + G D + + ++ I N+ D Sbjct: 312 VNSDKLEQFPYISENGNLYFASNRAEGLGGLDLYSSDPQGDSFAEAYNLGSSINSNADDF 371 Query: 114 KIGSTNQKKQYQRLENNIFYLS--NSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEE 171 + ++ N + + + + + + K L E ++ + Sbjct: 372 ALIIKERQGSGFMSSNRTGKDKIYSFETFPNLNYQIIGNVDDKKTLEPLPGAEVTLYRPS 431 Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKK---------ISSTLSGLVADNIVKGVLFETTRT 222 E + K + R L K + + A N + + + Sbjct: 432 TGTTQKTITEADGSFKFEVRPNSLYKVKATKALYAPVEKEVKIEYAQNTKTLIKLQMSAY 491 Query: 223 GILISIIDQRNT----------PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 I+ + FD + P+ L K+ ++ E + + H Sbjct: 492 ADTEDIVAVNDRNQLTQVKLEKIYFDFDKANIRPDAATTLDKLVALMKKYPEMNVEVASH 551 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SD 325 TD R N +LS RA S ++ G+ R+ G+ A ++ Sbjct: 552 TDQ---RGPEDYNLQLSQRRAQSTVDYIVSKGIDRSRLKA-QGYGEQDPINACPSGDCTE 607 Query: 326 PMNSANRRIDILVE 339 NRR + + Sbjct: 608 EQFDENRRSEFTIL 621 >gi|86739073|ref|YP_479473.1| OmpA/MotB [Frankia sp. CcI3] gi|86565935|gb|ABD09744.1| OmpA/MotB [Frankia sp. CcI3] Length = 187 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD +SS E + L +I + I++ G++D DN RLS DRA + Sbjct: 90 LFDSNSSELRREAVTALGQILPSIREHPGHIAVIGYSDGL---GRTEDNLRLSQDRAKAV 146 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L G+ + ++ G +++ RR++I++ Sbjct: 147 ESWLATQGIPGS-VLEVEGKGE--EGAQDGVADASRRRVEIVL 186 >gi|89071216|ref|ZP_01158402.1| OmpA family protein [Oceanicola granulosus HTCC2516] gi|89043258|gb|EAR49486.1| OmpA family protein [Oceanicola granulosus HTCC2516] Length = 107 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + + T +++++ +FD S+ L + L + I++ GHTD Sbjct: 1 MRIDNTGDSLVVTL---PQDILFDTDSATLSGSLQSDLNALARSLNNYPSTTITVIGHTD 57 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + A N LS RA + L+ SGVS RI+ + G + Sbjct: 58 NT---GEASYNQNLSRRRAQAVTSTLISSGVSAGRINTV-GRGEDAPIATN 104 >gi|332160220|ref|YP_004296797.1| putative lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607214|emb|CBY28712.1| integral membrane protein YfiB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664450|gb|ADZ41094.1| putative lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 169 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 10/131 (7%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++ F+ T G + N +FD + +Q IG L + + + Sbjct: 43 ALQEQGFKLTDNGWV---FGLANKVLFDSDVRKLNASGVQTVQNIGRALHNVGINHMRVD 99 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 G+TDA N +LS RA + L G+ I + G + Sbjct: 100 GYTDAI---GEDGYNQQLSFQRASAVADTLAAIGIPRANIE-VRGRGKLEPVADNRTAKG 155 Query: 328 NSANRRIDILV 338 + NRR+ I+V Sbjct: 156 RAENRRVAIIV 166 >gi|301064490|ref|ZP_07204897.1| OmpA family protein [delta proteobacterium NaphS2] gi|300441407|gb|EFK05765.1| OmpA family protein [delta proteobacterium NaphS2] Length = 275 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + PE L + V + + ++G+TD + N LSL R Sbjct: 176 GDVLFDFDKANIKPEFYGQLDEAARVFEMNPGLKVEVQGNTDNV---GTYKYNMGLSLRR 232 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 A + L+K GV R++ G A H P A Sbjct: 233 ANAVLNYLVKRGVDRSRLAA-RGSATHVPSHNDTPEGRA 270 >gi|239994128|ref|ZP_04714652.1| OmpA/MotB [Alteromonas macleodii ATCC 27126] Length = 398 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 18/135 (13%) Query: 220 TRTGILI-----SIIDQRN-----TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 T G+ + ++ D+ +FD S++ + + E + I Sbjct: 260 TPAGVKVDAKGCTVFDEETVEITLRVLFDNESAVVKMPKDPEISEFAEFMKQYPSTTAVI 319 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKI--ASD 325 GHT A P N LS RA + +V++ G+ R+ I G+ +L + Sbjct: 320 EGHTSA-PGSEAY--NMDLSKRRAANFKEVMVDMYGIEGSRLETI-GYGETQLLDNGKNA 375 Query: 326 PMNSANRRIDILVED 340 + NRRI + V+D Sbjct: 376 EAHRVNRRISVTVKD 390 >gi|170736605|ref|YP_001777865.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818793|gb|ACA93375.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] Length = 234 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L + ++I G TD++ A N LS RA + Sbjct: 131 FATDSAALTSQARNDLDRFIAANRGVEFARVAITGFTDST---GSAAHNRTLSEARARTV 187 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 L +G+ S G A A+ + NRR++I ++ + Sbjct: 188 VNYLRSNGLQARSFSAEGLGAADPVASNATADGRAQNRRVEIRLDVK 234 >gi|163755848|ref|ZP_02162966.1| outer membrane protein, peptidoglycan-associated lipoprotein [Kordia algicida OT-1] gi|161324369|gb|EDP95700.1| outer membrane protein, peptidoglycan-associated lipoprotein [Kordia algicida OT-1] Length = 648 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 18/156 (11%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM------FDKSSSIPLPETIVVLQ 253 + L D ++ V + + I D + FD S P+ L Sbjct: 497 AEALLPKQEDPGLREVTLLLEKEEVPFEIGDDLAVTLNIPIIYFDFDKSNIRPDAAAELA 556 Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K+ V+ I +R HTD+ R N LS R S ++ G+ R++ Sbjct: 557 KVIAVMKKYPTLKIDVRSHTDS---RGSDSYNMALSQRRNQSTRDYIISKGIDASRLTG- 612 Query: 313 SGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 G+ R S+ + NRR + +V ++ Sbjct: 613 RGYGETRHVNKCSNGVKCSEEEHQLNRRSEFIVVEK 648 >gi|149188853|ref|ZP_01867143.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1] gi|148837273|gb|EDL54220.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1] Length = 217 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + P L ++ + L I+I GHTD++ N L L RA + Sbjct: 107 FGFDQANLTPMGDEALNRLADTLGKQASNITIDGHTDST---GPEGYNQALGLKRALTTS 163 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GV ++ I + F + + + NRR +I V Sbjct: 164 DGLISKGVDKNHIV-VRSFGETKPIATNSTTEGRAQNRRSEIWV 206 >gi|254441098|ref|ZP_05054591.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198251176|gb|EDY75491.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 226 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ L++ + + GHTD + N RL L RA + Sbjct: 83 FPFNSTALDASARATLRQQANWIRQFPEVRFKVFGHTD---LVGSSAYNRRLGLRRAEAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L G+S R+ + F + I ++ NRR Sbjct: 140 VLYLSSQGISRSRLEAVVTFGETQPLIVTEGRERRNRR 177 >gi|149369527|ref|ZP_01889379.1| outer membrane protein, peptidoglycan-associated lipoprotein [unidentified eubacterium SCB49] gi|149356954|gb|EDM45509.1| outer membrane protein, peptidoglycan-associated lipoprotein [unidentified eubacterium SCB49] Length = 631 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 10/111 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P+ L K+ ++ V+ HTD+ R N LS RA + Sbjct: 525 FDYDKHNIKPQAAFELDKVVTLMKKYPTMVVRAESHTDS---RATEAYNLALSNRRAQAT 581 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVEDR 341 Q ++ GV E RIS + G + +D +S NRR + + ++ Sbjct: 582 VQYIISKGVDEARISGV-GKGESTPINSCGDKCTDEQHSKNRRSEFTIVEQ 631 >gi|288962863|ref|YP_003453157.1| outer membrane protein [Azospirillum sp. B510] gi|288915129|dbj|BAI76613.1| outer membrane protein [Azospirillum sp. B510] Length = 347 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD S P + ++ E + V I + GHTD N +LSL RA Sbjct: 241 QVFFDWDKSAITPNSDKIIADAAEAAGRARAVRIQVIGHTDT---SGSPSYNQKLSLRRA 297 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 + + L+ G + I I G ++L + + P +NRR I+++ Sbjct: 298 EAVRKALVGHGTPAN-IISIEGVGENQLMVPTGPNVREPSNRRAQIMIK 345 >gi|317047599|ref|YP_004115247.1| OmpA domain-containing protein transmembrane region-containing protein [Pantoea sp. At-9b] gi|316949216|gb|ADU68691.1| OmpA domain protein transmembrane region-containing protein [Pantoea sp. At-9b] Length = 356 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G TD + N +LS Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQLYSQLSSLDPKDGSVVVLGFTD--RIGSEQY-NQKLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336 RA S L+ G+ ++IS G + D + N RR++I Sbjct: 285 EKRAQSVVDYLVSKGIPANKISA-RGMGKSNPVTGNTCDSVKGRNALIDCLAPDRRVEI 342 >gi|197124092|ref|YP_002136043.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|196173941|gb|ACG74914.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] Length = 386 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 LP + V+L ++ + L +++ HTD + ++ RLS RA + L Sbjct: 287 DDLLPSSAVLLDELAQALRDHPRLRVAVEVHTDGAGEAAASK---RLSQARAEAVRAALA 343 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 G+ +R+ GF ++ + NRR +I + Sbjct: 344 GRGIEAERVEA-KGFGAEHPIASNKTARGRAQNRRTEIRILP 384 >gi|86146732|ref|ZP_01065053.1| putative protein F-related protein [Vibrio sp. MED222] gi|85835579|gb|EAQ53716.1| putative protein F-related protein [Vibrio sp. MED222] Length = 197 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P P L +G L+ + + I GHTD + R N LS RA Sbjct: 93 FKTGSTSPEPAYNNWLDTLGSYLSRRQDIDVVIEGHTDNT---GSDRVNDPLSEQRAKEV 149 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L + VS I GF + AS + NRR+++++ Sbjct: 150 KARLESNYVSSRAIY-TRGFGEYVPACNNASAQGKACNRRVELML 193 >gi|326336319|ref|ZP_08202490.1| outer membrane protein A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691493|gb|EGD33461.1| outer membrane protein A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 666 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + V L KI EV+ I+I+ HTD+ R + N LS RA S Sbjct: 558 FDFDKSNIRSDAEVDLAKIVEVMKEHPNIKIAIKSHTDS---RGSDQYNLALSDRRAKST 614 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 + ++K G++ R++ G+ +L ++ + NRR + ++ + Sbjct: 615 LEWIVKQGITRSRLTA-KGYGETQLVNGCSNDVPCTEEEHQKNRRSEFIITE 665 >gi|323137848|ref|ZP_08072923.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] gi|322396851|gb|EFX99377.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] Length = 477 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 225 LISIIDQRNTPM-FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIAR 282 ++ D TP+ F+ S ++ ++ + VL I + HTD I R Sbjct: 363 RTALTDLARTPIIFETDDSAVAADSAPLVDALTATVLRCRAATIEVAAHTDNFGIEEINR 422 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + RA L+K+G R+S +G+ R + D + NRR++ +V Sbjct: 423 S---RTKRRAQVLVDRLIKAGADPSRVSA-AGYGSERPVAPNDSDENRARNRRVEFVV 476 >gi|220918872|ref|YP_002494176.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956726|gb|ACL67110.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 386 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 LP + V+L ++ + L +++ HTD + ++ RLS RA + L Sbjct: 287 DDLLPSSAVLLDELAQALRDRPRLRVAVEVHTDGAGEAAASK---RLSQARAEAVRAALA 343 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 G+ +R+ GF ++ + NRR +I + Sbjct: 344 GRGIEAERVEA-KGFGAEHPIASNKTARGRAQNRRTEIRILP 384 >gi|42527497|ref|NP_972595.1| OmpA family protein [Treponema denticola ATCC 35405] gi|41818082|gb|AAS12506.1| OmpA family protein [Treponema denticola ATCC 35405] Length = 452 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 9/128 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGH 271 K T+ G ++ + + + F+ ++ L L +I ++L S + GH Sbjct: 330 KDFEVTKTKRGTMLRLKNLQ----FEPDRAVLLKGEEAKLDEIAKILKKSESEFFFVEGH 385 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSA 330 T + LS +RA + + L+K G+ ++ I + +G ++ S Sbjct: 386 TADVGKPEEEKI---LSQERAKTVIEKLVKRGIPAEKFIYQGAGGTKPISPNGTEEGRSQ 442 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 443 NRRVEITI 450 >gi|238797976|ref|ZP_04641466.1| OmpA domain protein [Yersinia mollaretii ATCC 43969] gi|238718181|gb|EEQ10007.1| OmpA domain protein [Yersinia mollaretii ATCC 43969] Length = 246 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Query: 231 QRNTPMFDKSSSIPLPETI--VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRL 287 + P+FD +S P T +L + ++ ++ + I GH+D + ++ N L Sbjct: 127 TQMAPLFDSNSIKLKPNTQTSEMLNSLLLLVENNQGRKVLIVGHSDNTGNASL---NMAL 183 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 S RA L++ I G ++D S NRR+++L+ +Q Sbjct: 184 SERRAQVVRDWLIQQSSLSIDDFIIRGMGALEPVASNDTKIGQSQNRRVEVLLLPKQ 240 >gi|57168474|ref|ZP_00367608.1| chemotaxis motB protein, putative [Campylobacter coli RM2228] gi|305432893|ref|ZP_07402051.1| chemotaxis motB protein [Campylobacter coli JV20] gi|57020282|gb|EAL56956.1| chemotaxis motB protein, putative [Campylobacter coli RM2228] gi|304444047|gb|EFM36702.1| chemotaxis motB protein [Campylobacter coli JV20] Length = 243 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 60/323 (18%), Positives = 103/323 (31%), Gaps = 106/323 (32%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 IFD T + Q ++ Y + Sbjct: 53 ----VKIFD-------------------------------YTATQTVQQETQDTYKYKGS 77 Query: 137 SQQSEHCKNSLTRDSEKGKDLCK--STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 ++ E + L + + +++ K L++S N+E + E+ A +QD Sbjct: 78 QEEKEDELSKLKQMAVNQQEVIKKLQAALDQSENQEILNLPSKVEFERGSAQIVSADIQD 137 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 K+I+ +S L I I I Sbjct: 138 YLKRIAQLISYLPPQ--------------IEIEI-------------------------- 157 Query: 255 IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI-SKIS 313 RG+TD S + L RA + + L++ GVS I K Sbjct: 158 --------------RGYTDNSDSALRSY---DLGYTRAENVLKYLIEGGVSTKNINLKSY 200 Query: 314 GFAHHRLKIASDPMNSANRRIDI 336 G I +P N R+ I Sbjct: 201 GL---NSPINGNPQALENNRVQI 220 >gi|262198423|ref|YP_003269632.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262081770|gb|ACY17739.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 1264 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + ++ +L +I I G+TD R N R+S RA Sbjct: 1161 FDADRVRLRRHARRMFAEVAAILHAHPSLRLIQIEGYTDD---RGDLEANLRISQHRAEI 1217 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+ GV+E R+ + G+ R + NRR+++ + Sbjct: 1218 VRAFLIARGVAEHRLRAV-GYGSARPIGDNRSERGRELNRRVELRILR 1264 >gi|261880624|ref|ZP_06007051.1| immunogenic lipoprotein PG3 [Prevotella bergensis DSM 17361] gi|270332665|gb|EFA43451.1| immunogenic lipoprotein PG3 [Prevotella bergensis DSM 17361] Length = 222 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 6/151 (3%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 L K ++ A + + E T G+ + + +FD + + + L Sbjct: 65 LIGKHMDKVAAETAAQVKNAKVEEVTDANGLKAVKVTFDSGILFDLNQATLNSSSKKELA 124 Query: 254 KIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 K VL ++ + I G+TD N LS RA S L GVS ++ + Sbjct: 125 KFSNVLKENSSCHVDIYGYTDR---SGNDAINVPLSQKRAQSVANYLSSCGVSNTQMQNV 181 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 G I + ++ NRR+++ + Q Sbjct: 182 VGKGSQDE-IENKRVSKVNRRVEVYLYASQA 211 >gi|209525121|ref|ZP_03273665.1| OmpA/MotB domain protein [Arthrospira maxima CS-328] gi|209494530|gb|EDZ94841.1| OmpA/MotB domain protein [Arthrospira maxima CS-328] Length = 322 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 13/205 (6%) Query: 116 GSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 G ++ + EN Y ++ Q ++ ++ E + + N+ + Sbjct: 99 GKVPNERLRELAENLAVYTASDLQIDNQIIAVDVPPEPIVTAGEVERMTGICNEMACVNI 158 Query: 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP 235 ++ + + + R A+ I + + ++ + + I + N Sbjct: 159 ESNYSDRQVIISGQVRHMRDAQIIPAAFDNIPG--------VKSVFSTLKIDPVRIENRI 210 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S+ P+ + ++ +I E L + + I GHTD R A N +L+L+RA + Sbjct: 211 YFNFGSAQINPQDMKIITRITEFLDQYPKLSLRIIGHTD---LRGSAAINQQLALNRATA 267 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L K G+ R+ I G A Sbjct: 268 VRDALTKQGIDPKRLE-IVGNAQPP 291 >gi|149202036|ref|ZP_01879009.1| OmpA domain protein [Roseovarius sp. TM1035] gi|149144134|gb|EDM32165.1| OmpA domain protein [Roseovarius sp. TM1035] Length = 635 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 21/116 (18%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I +VL + I GHTD+ N +LSL RA + Sbjct: 499 FEPGSAKIDAQGAAIMDDIADVLKKCGEVRMEIGGHTDSQ---GGEDMNAQLSLSRARAV 555 Query: 296 YQVLMKSGVSEDRISKI-------SGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + E R+ ++ G+ ++ NRRI+ + + Sbjct: 556 --------LDELRMRRVLTSSIDAKGYGESVPIADNETEEGRETNRRIEFRLIRPE 603 >gi|330447940|ref|ZP_08311588.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492131|dbj|GAA06085.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%) Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286 D R+ + F+ + L + L H + I GHTD + N + Sbjct: 177 DARDVVLQFNLGQRVVSSSQKQTLVDLASYLKHDKNIKRVLIDGHTDNV---GSSVANLQ 233 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +S RA +L ++GV + +I ++ + NRR+ I Sbjct: 234 ISKVRADDVASILRENGVRSS-LMEIRSHGSRYPVANNNTQQGKAKNRRVTI 284 >gi|294673972|ref|YP_003574588.1| OmpA family protein [Prevotella ruminicola 23] gi|294472547|gb|ADE81936.1| OmpA family protein [Prevotella ruminicola 23] Length = 679 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +D + + PE+ L ++ +L + V I + HTD R N RLS R Sbjct: 522 ENIFYDFNKATLRPESKTALDQLVVLLNQNPNVTIELSAHTDC---RGSEAYNQRLSQQR 578 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A S L+ G++ DR++ G+ K Sbjct: 579 AESVVAYLIAHGIAADRLTP-KGYGESMPK 607 >gi|156319761|ref|XP_001618159.1| hypothetical protein NEMVEDRAFT_v1g225448 [Nematostella vectensis] gi|156197754|gb|EDO26059.1| predicted protein [Nematostella vectensis] Length = 294 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S + + L KI EV+ + + +R HTD+ R A N LS RA + Sbjct: 186 FDLNKSNIRKDAALELAKIVEVMKENPSIKVDVRSHTDS---RQSAEYNEELSDKRAKAT 242 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 ++K G+S DR++ G+ +L S+ + ANRR + +V Sbjct: 243 VAWMVKKGISADRLTA-KGYGESQLVNKCSDGVECSEEEHQANRRSEFIV 291 >gi|319952094|ref|YP_004163361.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319420754|gb|ADV47863.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 370 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 12/160 (7%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 + + + KK S + D + ++ T+ + + +FD + Sbjct: 208 INNEDTFKQEVKKASRKSAYYFIDMVSVTLIPSYTQNQLYVI-----EELLFDFDETSIE 262 Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 + L + L + + + + GHTDA ++ ++ LS RA + L+KSG+ Sbjct: 263 IDYNQQLSDLVTYLKSNPKLNVYLYGHTDAM--GSVKYND-DLSEKRAATVASFLVKSGL 319 Query: 305 SEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 S++RIS GF + ++++ + NRR++ LV + Q Sbjct: 320 SKNRISW-KGFGFKKPVVSNEKEDIRFKNRRVEFLVAEPQ 358 >gi|313205367|ref|YP_004044024.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312444683|gb|ADQ81039.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 446 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++S + E L+++ ++L + + I GHT ++N R+ L RA S Sbjct: 342 FTQNSDKTIHEEADKLKELTDMLKANPNQCLQITGHTCNW---GTRKNNLRIGLRRANSV 398 Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338 L+K G +I + G A + S+ NRR++I V Sbjct: 399 KSKLIKQGAPAKKIFTESKGEAEPLVPNTSEVNRKKNRRVEIKV 442 >gi|86132613|ref|ZP_01051206.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85816855|gb|EAQ38040.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 650 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S P+ + L K+ + E VI++R HTD+ R N LS RA S Sbjct: 542 FDYNKSDIRPDAALELTKVISAMKQVPEMVINVRSHTDS---RGKDSYNLSLSDRRAKST 598 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 ++ G++ +RIS +G+ +L ++ + NRR + +V ++ Sbjct: 599 VAYIISRGINAERISG-NGYGETQLVNGCGNNSDCTEEQHQLNRRSEFIVVNQ 650 >gi|259417800|ref|ZP_05741719.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259346706|gb|EEW58520.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 345 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 21/194 (10%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + E+ N + + + L D KK S +G + Sbjct: 166 QMLERHDPSQSLRPSGGPSNGGRDTSDGAELGSDVTDAAEQALLVDAIKKGGSLTTGAIR 225 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-IS 267 D ++ G + ++D FD +S+ L+++ E L + I Sbjct: 226 DLLL--------LQG-RVPLLDLE----FDTASTQMGEGPFDSLRQLAEFLDQNKSATIL 272 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP 326 + GHTD N LS RA S + L + G+ RI +++G + + Sbjct: 273 LVGHTDTV---GGLEGNIALSRRRAISVRERLTTRYGIDGGRI-QVAGAGYMAPLAPNTT 328 Query: 327 MNSA--NRRIDILV 338 NRR++ ++ Sbjct: 329 ETGRETNRRVEAVL 342 >gi|170725100|ref|YP_001759126.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810447|gb|ACA85031.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 497 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F+ S LPE V++ + L + + GHTD N LS R Sbjct: 387 DGLLFEFDSDKMLPEAKAVVKVVASYLKSHPKQRFYVIGHTDDQ---GKQSYNQLLSDKR 443 Query: 292 AYSAYQVLMKSG-VSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 A + + L + + +D+++ G + +++ NRR+++++ Q Sbjct: 444 AKAVVKQLTTAHQIPKDQLTG-KGVGEYSPVANNSNEAGQKLNRRVELVLRSDQ 496 >gi|163789308|ref|ZP_02183749.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] gi|159875376|gb|EDP69439.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteriales bacterium ALC-1] Length = 680 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + + +QK+ VL I IR HTD R A N +LS RA S Sbjct: 558 FDFDKSNIRYDAEIEIQKVLAVLNKYPTMHIDIRSHTDC---RGPASYNEKLSDRRAKST 614 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----ASDPMN------SANRRIDILVEDRQG 343 Q L+ G++ +R++ G+ RL ++ + NRR + ++ G Sbjct: 615 RQYLIDKGIAAERLTA-KGYGESRLVNDCGCEPTNESSCSQEEHQLNRRSEFIITSING 672 >gi|91792716|ref|YP_562367.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91714718|gb|ABE54644.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 209 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + S L +L+KI + S I++ GHTD N LSL RA + Sbjct: 105 FEFAKSQVLQTQKPLLKKIAMLANQSGAKITLVGHTD---IIGSEAFNQNLSLKRAMNVS 161 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 VL+ G+ I G + N NRR++I + Sbjct: 162 AVLVAEYGLMASDIH-YYGVGSTEPADDNATANGRQANRRVEITI 205 >gi|90407861|ref|ZP_01216037.1| hypothetical outer membrane protein OmpA [Psychromonas sp. CNPT3] gi|90311036|gb|EAS39145.1| hypothetical outer membrane protein OmpA [Psychromonas sp. CNPT3] Length = 339 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 10/142 (7%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 S ++ V+ V + ++ I ++ F SS+ E++ L + E L Sbjct: 194 SQLVAEEPVQEKVEAVKEKVQDK--MMKIASEKVQVAFPFGSSVLSEESMQQLTPVIEHL 251 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAH 317 + + + GHTDA A N S+ RA + L + + + R++ +SG Sbjct: 252 KAYPDAKLFLVGHTDA---SGPAEYNQTFSVKRADALATYLSEEFSIDKSRMT-VSGEGE 307 Query: 318 HRLKIASDPM--NSANRRIDIL 337 +D + NRR+ + Sbjct: 308 SMPIATNDTTEGRAMNRRVSVF 329 >gi|167589725|ref|ZP_02382113.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu] Length = 241 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + L + ++I G+TD++ N RLS RA S Sbjct: 138 FDVDSAKLTLDARRQLDQFLNTNKGVGFQRVTITGYTDST---GSLAHNRRLSESRARSV 194 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 L G+ + G ++ + NRR++I V Sbjct: 195 ATYLRTGGLQAAQFVS-EGMGPSDPVASNATADGRAQNRRVEIQVVP 240 >gi|294508723|ref|YP_003572782.1| chemotaxis MotB protein [Salinibacter ruber M8] gi|294345052|emb|CBH25830.1| chemotaxis MotB protein [Salinibacter ruber M8] Length = 227 Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 235 PMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLS 288 +F+ ++ L+ I + + + GH D +P NW LS Sbjct: 101 SLFEAGTATLTAAGKKRLRATIAHLETAYPTRAVRVEGHADDTPLSEALQERFASNWELS 160 Query: 289 LDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS 324 RA + + L +S ++ + + ++ + ++ Sbjct: 161 AARATAVVRYLSARSALAPSQFAALA-YGATDPVASN 196 >gi|229837675|ref|ZP_04457837.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A] gi|229704363|gb|EEO91374.1| putative OmpA-family membrane protein [Yersinia pestis Pestoides A] Length = 513 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 235 PMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD T +++ + ++ A +I + GHTD A+ N LSL RA Sbjct: 381 SLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTD---ITGDAQANHILSLKRAE 437 Query: 294 SAYQ-VLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 + +L S VS + G+ R +D + NRR++I + + Sbjct: 438 ALRDWMLSTSDVSPT-CFAVQGYGATRPIADNDTPDGRVLNRRVEISLVPQ 487 >gi|170723153|ref|YP_001750841.1| peptidoglycan-associated lipoprotein [Pseudomonas putida W619] gi|169761156|gb|ACA74472.1| peptidoglycan-associated lipoprotein [Pseudomonas putida W619] Length = 165 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 66 FEYDSSDLKPEAMRALDVHAKDLKSNGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163 >gi|110637108|ref|YP_677315.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110279789|gb|ABG57975.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 841 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289 Q+ + FD SI L + I + GHTD++ + N +LS Sbjct: 19 QQLSVFFDSGKSILSEREKQRLDSLIYTFETELIYDIRLVGHTDSTGYPEK---NKQLSK 75 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRR--IDILVED 340 RA + Y L K S I+G A+ D + NRR I I V + Sbjct: 76 ARAIAVYTYLSKR--KNIHFSSITGKGSLSPVQANTTDAGRAHNRRCDISITVSN 128 >gi|90022173|ref|YP_528000.1| peptidoglycan-associated lipoprotein [Saccharophagus degradans 2-40] gi|89951773|gb|ABD81788.1| OmpA/MotB [Saccharophagus degradans 2-40] Length = 163 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD ++ E L +V+ + I + GH D R N L RA + Sbjct: 64 FDFDQAMLRSEARAALLIHAKVIKETNASIRLEGHADE---RGSREYNMALGERRANAVR 120 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 L+ GV I +S ++ S+ S NRR++I Sbjct: 121 DFLVLQGVPSYSIETVSYGEERAAQVGSNESAWSKNRRVEI 161 >gi|241761684|ref|ZP_04759771.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373992|gb|EER63525.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 363 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD PE +L + A + + + + G+TD A+ N LS RA S Sbjct: 256 FFDFDKYNITPEAASILDNVASSYAQTGQARVVVAGYTDT---AGPAKYNMGLSQRRADS 312 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 L+ GV +D + + L + + NRR++I Sbjct: 313 VKAYLVGKGVPDDAM-ATEAYGKTHLLVQTADGVREPQNRRVEI 355 >gi|237752333|ref|ZP_04582813.1| OmpA/MotB [Helicobacter winghamensis ATCC BAA-430] gi|229375822|gb|EEO25913.1| OmpA/MotB [Helicobacter winghamensis ATCC BAA-430] Length = 276 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 6/161 (3%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 ++ + + + + I S + + G I+ +FD+ Sbjct: 74 QQQADITVEPETAEEVRLIESAILDFKENVKTSLGPSNIIDEGSEGFILRFSGKLLFDEG 133 Query: 241 SSIPLPETIVV-LQKIGEVLAHSTE--VISIRGHTDASPFRNI--ARDNWRLSLDRAYSA 295 V+ L+++ +L + + G+TD +D+ LS RA Sbjct: 134 EITLNDADEVLFLKRLALILQKMPSTLHLDVIGYTDNRTISPTPKFKDDIGLSALRALGV 193 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335 +VL+++GV+ +++ + G + L + NRR++ Sbjct: 194 ERVLLENGVNPKKMTALGNGATNFILPNTTKENRQKNRRVE 234 >gi|46447485|ref|YP_008850.1| peptidoglycan-associated lipoprotein precursor (pal) [Candidatus Protochlamydia amoebophila UWE25] gi|46401126|emb|CAF24575.1| probable peptidoglycan-associated lipoprotein precursor (pal) [Candidatus Protochlamydia amoebophila UWE25] Length = 246 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 + T FD SS+ + + + +I + + V I I GHTD R N Sbjct: 132 QLAAIFKTIYFDYDSSMIKGQANLQTIHQIADFMRRHPNVYIFIEGHTDE---RGPQAYN 188 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 L R+ + +L+ V+ D + IS G + + S NRR++ + +R Sbjct: 189 LALGSRRSNAVRNLLISEDVNPDNLFTISYGKERPVVLEKHEEGWSRNRRVEFKIYER 246 >gi|312881847|ref|ZP_07741618.1| sodium type flagellar protein MotY precursor [Vibrio caribbenthicus ATCC BAA-2122] gi|309370493|gb|EFP97974.1| sodium type flagellar protein MotY precursor [Vibrio caribbenthicus ATCC BAA-2122] Length = 293 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D+SS ++ L KI E + + ++ + + +TD ++ ++ LS RA + Sbjct: 187 YDRSSVELNKQSQKRLAKIAEYIKQTKDIDLVLVSTYTDNEDSKSASQG---LSEQRAKA 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + G+ EDRI ++ G+ R + NRR+ I + Sbjct: 244 LQRYFKSLGLPEDRI-QVQGYGKRRPIDDNASPIGKDRNRRVVISL 288 >gi|327404631|ref|YP_004345469.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320139|gb|AEA44631.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 798 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 23/132 (17%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFR 278 T G+ + N FD + P+ L KI E++ + I + HTD+ R Sbjct: 675 TDIGLNV------NPIYFDYNKWDIRPDAAKELDKIVEIMKKNPNIKIELGSHTDS---R 725 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---------- 328 N +LS RA ++ + ++ G++ RI+ G+ +LK++ + +N Sbjct: 726 GKDDYNIKLSDQRAKASARYIVSKGIAAGRITG-KGYGETKLKVSDEQINNMPKWDEKEK 784 Query: 329 --SANRRIDILV 338 NRR + ++ Sbjct: 785 GHQLNRRTEFII 796 >gi|197119091|ref|YP_002139518.1| OmpA family outer membrane protein [Geobacter bemidjiensis Bem] gi|197088451|gb|ACH39722.1| OmpA family outer membrane protein, DUF11 domain-containing protein [Geobacter bemidjiensis Bem] Length = 2000 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E +L+ VL E + + GHTD ++ N LS R +A Sbjct: 1731 FVFDRSELTLEAKHLLKGAARVLRARPQEKVIVEGHTDG--IGSVEY-NMALSQRRCDAA 1787 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L++ G++ R+ + + R + P NRR+++ Sbjct: 1788 ADYLVREEGIAGSRLLR-RWYGKSRPVADNVTTPGRRLNRRVEL 1830 >gi|126663670|ref|ZP_01734666.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] gi|126624253|gb|EAZ94945.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] Length = 625 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + S E L K+ V+ E++ HTD+ R N +LS RA S Sbjct: 520 FEFNKSNITAEGAAELDKLVAVMNEYPEMVIFAKSHTDS---RGSDSYNMKLSDRRAKST 576 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDR 341 Q L+ G++++RIS GF K+A ++ ++ NRR + L+ + Sbjct: 577 VQYLISKGIAKERISG-QGFGESEPKVACKSCTEEEHAQNRRSEFLIVKK 625 >gi|115375610|ref|ZP_01462867.1| putative outer membrane lipoprotein [Stigmatella aurantiaca DW4/3-1] gi|115367386|gb|EAU66364.1| putative outer membrane lipoprotein [Stigmatella aurantiaca DW4/3-1] Length = 206 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 24/170 (14%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 +LA+ Q ++ + K + + T ++N F + Sbjct: 46 SLLAVPGMALAQSPVEQFKKAAGKASKSTLEKKINTKLTEDA-------RKNQCSFKTGT 98 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVI----------SIRGHTDASPFRNIARDNWRLSLDR 291 + L+ + L + + + + GHTD+ A N LS R Sbjct: 99 DVLEAGCDQKLKNLTAALVEAKKQLDAGGVKNYQFEVSGHTDS---SGDAAKNKALSEKR 155 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN---SANRRIDILV 338 A + L+ G+ I + G + + D + NRR +I V Sbjct: 156 AAVIVKELVSRGIPRAEILAV-GRGSEQPLVKPDDTAAKKAKNRRYEIQV 204 >gi|218676771|ref|YP_002395590.1| hypothetical protein VS_II1010 [Vibrio splendidus LGP32] gi|218325039|emb|CAV26876.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 751 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 23/169 (13%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FD 238 +K L K L+ L L + D+ + E + I + R+T FD Sbjct: 549 GDKALLNAETKALEQLK-----NLLPNLGDSDELSLNTEVKKGQ---HIFELRSTTFAFD 600 Query: 239 KSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 +S+S + L ++G +L+ I+I+GHT + R N LS +RA Sbjct: 601 RSNSD-NRKARDSLIELGGILSQIHRPIPITIKGHTCS---RGSIEYNQTLSEERAIYIR 656 Query: 297 QVLMKSGVSEDRIS-----KISGFAHHRLKIASDPM--NSANRRIDILV 338 + + G++ ++ + + G + +D NRR+D+L+ Sbjct: 657 E-CILEGITSNQAAWKTCIRTIGLGERDPLVPNDSEDQRRRNRRVDLLL 704 >gi|126727783|ref|ZP_01743613.1| OmpA domain protein [Rhodobacterales bacterium HTCC2150] gi|126702910|gb|EBA02013.1| OmpA domain protein [Rhodobacterales bacterium HTCC2150] Length = 630 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ ++ + K+ E S + I GHTD+ N LS RA + Sbjct: 503 FAPGAADIEATSLSTIDKLTEAFQGCSEVAMEIGGHTDSQ---GRETMNLNLSQQRADAV 559 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 L+ GV ++ G+ + + NRRI+ ++ Sbjct: 560 LNGLLARGVLTSNLTA-KGYGETVPIADNGTEEGREENRRIEFVL 603 >gi|330994155|ref|ZP_08318083.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] gi|329758622|gb|EGG75138.1| Outer membrane protein [Gluconacetobacter sp. SXCC-1] Length = 411 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 265 VISIRGHTD---ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 I + G+TD A P N LSL RA L++ GV I I G+ Sbjct: 333 RIEVNGYTDNSAARPGPQGEHYNQALSLKRAQVIKAELVRDGVPGPAID-IHGYGDANPL 391 Query: 322 IAS--DPMNSANRRIDILV 338 + + + + NRR++I++ Sbjct: 392 VQTGANTREAQNRRVEIIL 410 >gi|85703482|ref|ZP_01034586.1| OmpA domain protein [Roseovarius sp. 217] gi|85672410|gb|EAQ27267.1| OmpA domain protein [Roseovarius sp. 217] Length = 635 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 92/326 (28%), Gaps = 30/326 (9%) Query: 29 NLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 GS I ++D L+A T + ++ + + Sbjct: 296 GGGS--ITFSDADVALLA-------PEGTPQSDFDDVAGKLEADLPDVFALTATL----- 341 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 PP + + ++ L G + + + + +S Sbjct: 342 PPPPDTAEPVAPEFVATLSPEGQVLIRGRVGSETSRETVRSFAKARFSSNAVHLTARVAE 401 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + S + P + RK ++A+ +S L G Sbjct: 402 GLPRDWSIRVLTGLEVLSYLSNGVVTVTPDNLSVQGNTGRKSASAEIAQFLSDKLGGAEK 461 Query: 209 -------DNIVKGVLFETTRTGILISIIDQRN--TPMFDKSSSIPLPETIVVLQKIGEVL 259 + V T I + ++ F+ S+ + ++ I ++L Sbjct: 462 YSIDVTYKKALDPVAGLPTPDECEAQIAEIQSTRKINFEPGSATIDAQGAAIMDDIADIL 521 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 E + I GHTD+ N +LSL RA + L V I G+ Sbjct: 522 KDCGEIPMVIGGHTDSQ---GREEMNEQLSLARARAVLDELRLRRVLTSSIDA-KGYGES 577 Query: 319 RLKIASDPMNSA--NRRIDILVEDRQ 342 ++ NRRI+ + + Sbjct: 578 TPIADNETEAGRETNRRIEFRLIRPE 603 >gi|167035188|ref|YP_001670419.1| peptidoglycan-associated lipoprotein [Pseudomonas putida GB-1] gi|166861676|gb|ABZ00084.1| peptidoglycan-associated lipoprotein [Pseudomonas putida GB-1] Length = 166 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 67 FEYDSSDLKPEAMRALDVHAKDLKSNGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164 >gi|113970709|ref|YP_734502.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113885393|gb|ABI39445.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 290 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D+ + + L +I E L++ +V + + +TD+ R++ N ++S RA S Sbjct: 184 YDEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSV---NQKVSDKRAES 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + SG+ +DRI + G R +++ + NRR+ I + Sbjct: 241 VKDFFVASGIPQDRIVTV-GHGERRHVASNEDIEERALNRRVVIRI 285 >gi|83816525|ref|YP_446790.1| OmpA family protein [Salinibacter ruber DSM 13855] gi|83757919|gb|ABC46032.1| OmpA family protein [Salinibacter ruber DSM 13855] Length = 227 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 235 PMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV-ISIRGHTDASPFRNI----ARDNWRLS 288 +F+ ++ L+ I + + + GH D +P NW LS Sbjct: 101 SLFEAGTATLTAAGKKRLRATIAHLETAYPTRAVRVEGHADDTPLSEALQERFASNWELS 160 Query: 289 LDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIAS 324 RA + + L +S ++ + + ++ + ++ Sbjct: 161 AARATAVVRYLSARSALAPSQFAALA-YGATDPVASN 196 >gi|260062573|ref|YP_003195653.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501] gi|88784140|gb|EAR15310.1| outer membrane protein OmpA [Robiginitalea biformata HTCC2501] Length = 375 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 13/187 (6%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 ++ EK+ +EE ++ I + L ++ + + Sbjct: 186 EEGLTRKGAEKAAMREELLAALQRRQDSIRQAEEAAEQARLLQEQEEQRLAAQREEAARK 245 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 + + + D F SS E L+ I + + E SI+ H D Sbjct: 246 AAEAARKDALKREL-DSIGGLRFAFDSSYLDAEAKAKLEAIAAFMKRNPELTFSIQAHAD 304 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP 326 + + W L+ RA L G+ +R+ ++ G +L + Sbjct: 305 SR--GPEKYNQW-LTERRAQRVADYLTGEGIRMERL-QVEGLGESQLLNHCSDGVRCTAA 360 Query: 327 MNSANRR 333 ++ NRR Sbjct: 361 EHAVNRR 367 >gi|126090250|ref|YP_001041705.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|125999881|gb|ABN63950.1| OmpA/MotB domain protein [Shewanella baltica OS155] Length = 333 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 21/147 (14%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIG 256 TL ++ K V+ ET+ + S + M FD + + I L ++ Sbjct: 186 TLIKELSTPATKTVIVETSPQTLTFS-----SKSMNVIWGFDA--TKLSHDFIEQLAEVV 238 Query: 257 EVLAHSTE-VISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 EVL + +++ GH D+ + A N LS RA + L++ GVS +I + Sbjct: 239 EVLNTYPQARVAVLAVGHADS--IGSEAY-NQALSEKRAQTVANKLLELGVSPAQIE-VQ 294 Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338 G + + NRR+++ + Sbjct: 295 GEGESHPVANNQTADGRAKNRRVEVSI 321 >gi|283856455|ref|YP_163089.2| OmpA/MotB domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775459|gb|AAV89978.2| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 366 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD PE +L + A + + + + G+TD A+ N LS RA S Sbjct: 259 FFDFDKYNITPEAASILDNVASSYAQTGQARVVVAGYTDT---AGPAKYNMGLSQRRADS 315 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 L+ GV +D + + L + + NRR++I Sbjct: 316 VKAYLVGKGVPDDAM-ATEAYGKTHLLVQTADGVREPQNRRVEI 358 >gi|90412130|ref|ZP_01220136.1| putative peptidoglycan-associated lipoprotein [Photobacterium profundum 3TCK] gi|90326854|gb|EAS43239.1| putative peptidoglycan-associated lipoprotein [Photobacterium profundum 3TCK] Length = 174 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 15/136 (11%) Query: 209 DNIVKGVLFETTRTG--------ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL- 259 D + V+ G + + Q T F ++ + +L+ E L Sbjct: 38 DGSAQTVVTTPVDGGSAALSEQELRSQELRQEQTVYFKFDTAEIQADYQAMLEAHAEYLS 97 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 S + + GH D R N L RA + Q L GVS +IS +S + + Sbjct: 98 NSSDVKVIVEGHADE---RGTPEYNIALGERRANAVAQYLQALGVSASQISIVS-YGEEK 153 Query: 320 LKI--ASDPMNSANRR 333 + +D + NRR Sbjct: 154 PLVLGHTDADYAKNRR 169 >gi|99082304|ref|YP_614458.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99038584|gb|ABF65196.1| OmpA/MotB [Ruegeria sp. TM1040] Length = 352 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S+ L+ + ++ VI + GHTD + N LS RA S Sbjct: 248 FDTASAQVGEGPYDSLKHLATFMSDHESAVILLVGHTDTV---GGLQGNIALSERRAASV 304 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 + L+ + GV RI +++G + + + NRR++ ++ Sbjct: 305 RERLITRYGVDGARI-QVAGAGYMAPLAPNTSEEGREINRRVEAVLVR 351 >gi|261253096|ref|ZP_05945669.1| outer membrane protein [Vibrio orientalis CIP 102891] gi|260936487|gb|EEX92476.1| outer membrane protein [Vibrio orientalis CIP 102891] Length = 204 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 16/136 (11%) Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AH 261 + V ++ + E + + I +F S P +Q + + L + Sbjct: 60 IGAQVDNDGCGAAIVEEEQRQLRI---------LFANDSYEINPIFSDQIQTMAQFLEKY 110 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I I+G+ AS + N LS RA++ L+ V R++ I G+ RL+ Sbjct: 111 QSASIQIQGY--ASKVGDPEY-NLELSKKRAHAVEDELLYFEVDPKRVT-IVGYGESRLE 166 Query: 322 I--ASDPMNSANRRID 335 + ++ NRR+ Sbjct: 167 AEGDDETSHALNRRVT 182 >gi|167946599|ref|ZP_02533673.1| OmpA/MotB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 126 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 + NW LS RA S + L G+ + R++ +GF D + NRRI+ Sbjct: 16 SSVPSNWELSSARAVSVVRYLASQGIPQRRLTA-AGFGEFHSIDTGDTPEALSHNRRIE 73 >gi|294083749|ref|YP_003550506.1| OmpA/MotB domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663321|gb|ADE38422.1| OmpA/MotB domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 270 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 65/213 (30%), Gaps = 51/213 (23%) Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 YF L + + D +I L + N + + + + + Sbjct: 39 YFSYQLKIQSEAQDDYAQSATDHRTQILDELKDYLEGNGQIKIEIDAEQGILRV-----P 93 Query: 233 NTPMFDKSSSIPLP-------------------------ETIVVLQKIGEVLAHSTEV-- 265 +FD + L E + V + + + Sbjct: 94 EGVLFDSGVADILEGSNADFFSAKLAAAFAAVIRCSVLNEGLKVFDGSEKCRSKNVNRAF 153 Query: 266 ---ISIRGHTDASPFRNIAR------DNWRLSLDRAYSAYQ-------VLMKSGVSEDR- 308 I I GHTD SP R R N RLS RA + Y+ VL ++ Sbjct: 154 IESIFIEGHTDNSPIRGGLRGNVKINSNLRLSARRATNTYENMIAKKPVLEAFKSPKNEP 213 Query: 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 + +S + R + + + NRRIDI + Sbjct: 214 VFAVSAYGKTRPIDTNSTSSGKANNRRIDIRLL 246 >gi|221200311|ref|ZP_03573353.1| OmpA family protein [Burkholderia multivorans CGD2M] gi|221205990|ref|ZP_03579004.1| OmpA family protein [Burkholderia multivorans CGD2] gi|221174002|gb|EEE06435.1| OmpA family protein [Burkholderia multivorans CGD2] gi|221179652|gb|EEE12057.1| OmpA family protein [Burkholderia multivorans CGD2M] Length = 277 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 15/113 (13%) Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F KSS LP L I ++ A T I + GHTD + N LS RA Sbjct: 165 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIDVVGHTDRI---GSDQSNRALSRARAE 221 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRL----KIASDPM----NSANRRIDILV 338 + + L+ G+ RI ++ G + P +RR+ I V Sbjct: 222 TVKRYLVAHGLDAARI-RVEGAGSSQPVSHCPSGETPAVIACLQKDRRVTITV 273 >gi|39997403|ref|NP_953354.1| peptidoglycan-associated lipoprotein [Geobacter sulfurreducens PCA] gi|39984294|gb|AAR35681.1| peptidoglycan-associated lipoprotein [Geobacter sulfurreducens PCA] Length = 187 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + E +L E L + V I GHTD R N L RA SA Sbjct: 85 FDFDAWVLNGEAREILAGNAEWLRKNPGVAVILEGHTDE---RGSDAYNLALGEQRAKSA 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 + L G+ R++ +S + + + + + NRR++ + Sbjct: 142 MKYLQTLGIDAGRMTVVS-YGEEKPAVEGHDESAWAGNRRVEFI 184 >gi|110636642|ref|YP_676849.1| outer membrane porin F [Cytophaga hutchinsonii ATCC 33406] gi|110279323|gb|ABG57509.1| outer membrane protein, porin F precursor [Cytophaga hutchinsonii ATCC 33406] Length = 669 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 12/133 (9%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH 271 K + TG ++ + N FD + E+ L ++ +L ++ I I G+ Sbjct: 545 KDLYITPIETGQVVVL----NNVFFDFNKYELKSESYPELDRLVTLLKNNNAMKIEISGY 600 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA 330 TD+ + ++ +LS RA + L+ KS + + RI+ + F ++ Sbjct: 601 TDS--IGTKSYND-KLSGRRAQAVATYLITKSAIDKSRIT-VKAFGEENPVTSNKTAKGR 656 Query: 331 --NRRIDILVEDR 341 NRR++ + ++ Sbjct: 657 ELNRRVEFKITNK 669 >gi|91201947|emb|CAJ75007.1| similar to H+-driven flagellar motor component MotB [Candidatus Kuenenia stuttgartiensis] Length = 230 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD-ASPFRNIARDNWRLSLDRAYSA 295 F + + E + L + + A ++ + GHT A +W+LS+DRA + Sbjct: 124 FKEHGATLSLEGMHSLNNLVNLTADRPVLLMVEGHTRVAFKPSKDYETSWKLSVDRARAV 183 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 L + G + G ++ + S + N R+ I+++ Sbjct: 184 ADYLHEKGNISHKRLITVGHGNNNSFVKSPGGDRFNDRVSIIIK 227 >gi|312131656|ref|YP_003998996.1| ompa/motb domain protein [Leadbetterella byssophila DSM 17132] gi|311908202|gb|ADQ18643.1| OmpA/MotB domain protein [Leadbetterella byssophila DSM 17132] Length = 418 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++ S++ + + I E+L +V I I G+TD + N +LS +RA + Sbjct: 315 FEQGSALIDASSQKEVDNIAEILKAYPDVNIKIGGYTDNT---GSDEINTKLSAERAANV 371 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 L+ G+ R+ G+ + +RRI + V + Sbjct: 372 LAALVDRGIEASRLES-EGYGPLHPIADNSTEEGREQDRRIAVRVTKK 418 >gi|226945712|ref|YP_002800785.1| peptidoglycan-associated outer membrane lipoprotein [Azotobacter vinelandii DJ] gi|226720639|gb|ACO79810.1| peptidoglycan-associated outer membrane lipoprotein [Azotobacter vinelandii DJ] Length = 179 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L L + + + GHTD R N L RA + Sbjct: 80 FEYDSSDLKPEAMRALDVHARDLKGNGARVVLEGHTDE---RGTREYNMALGERRAKAVQ 136 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + L+ GVS ++ +S + R A + + NRR+++ Sbjct: 137 RYLVLQGVSPAQLELVS-YGEERPVAGGADEQSWAQNRRVEL 177 >gi|26987958|ref|NP_743383.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas putida KT2440] gi|148546495|ref|YP_001266597.1| peptidoglycan-associated lipoprotein [Pseudomonas putida F1] gi|60392879|sp|P0A138|PAL_PSEPK RecName: Full=Peptidoglycan-associated lipoprotein; Flags: Precursor gi|60392880|sp|P0A139|PAL_PSEPU RecName: Full=Peptidoglycan-associated lipoprotein; Flags: Precursor gi|24982671|gb|AAN66847.1|AE016313_6 peptidoglycan-associated lipoprotein OprL [Pseudomonas putida KT2440] gi|663068|emb|CAA52294.1| OprL protein [Pseudomonas putida] gi|148510553|gb|ABQ77413.1| Peptidoglycan-associated lipoprotein [Pseudomonas putida F1] gi|313497575|gb|ADR58941.1| OprL [Pseudomonas putida BIRD-1] Length = 166 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 67 FEYDSSDLKPEAMRALDVHAKDLKANGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164 >gi|260891273|ref|ZP_05902536.1| OmpA family protein [Leptotrichia hofstadii F0254] gi|260858949|gb|EEX73449.1| OmpA family protein [Leptotrichia hofstadii F0254] Length = 367 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 10/110 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +P L+ I V+ I GHTD++ A N +LS+ RA + Sbjct: 251 FKVDGRVPNEGEAADLRTIAGVINQFADGGSIDFVGHTDST---GSAAYNQKLSVARAQN 307 Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 ++L + G+ IS I+G +D + NRR+++ ++ Sbjct: 308 VAKLLREYGLKNT-ISYGTITGQGESNPADTNDTVEGRYNNRRVELFFQN 356 >gi|86146029|ref|ZP_01064356.1| Outer membrane protein [Vibrio sp. MED222] gi|85836234|gb|EAQ54365.1| Outer membrane protein [Vibrio sp. MED222] Length = 278 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 19/211 (9%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + ++I K+ + A ++KRL +L + Sbjct: 67 AKLHLDALIQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQ 126 Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + S + + + +D + F ++S+ P+ + L + Sbjct: 127 LDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQ----FAENSTEVNPKYMGRLAE 182 Query: 255 IGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +L H + + + GH DA+ + N L+L RA + L G+ RI +S Sbjct: 183 ATTLLNKHKSLDLVVTGHADAT---GTEKFNDDLALGRAKQVERYLTIFGLGAQRIKAVS 239 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342 SD NRR+ I + + Sbjct: 240 -VGETVPLFEGESDGTRLTNRRVSIEIISPK 269 >gi|118591641|ref|ZP_01549037.1| OmpA/MotB [Stappia aggregata IAM 12614] gi|118435634|gb|EAV42279.1| OmpA/MotB [Stappia aggregata IAM 12614] Length = 222 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD +S+ + L ++ +L+ + GHTDA + A+ N LS RA Sbjct: 116 LFDYNSASLRHDQAAKLAELSRMLSQEKFKNYRFLLLGHTDA---KGSAQYNLTLSQQRA 172 Query: 293 YSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + + G +SE+R+ SG +LK DP NRR+ +++ Sbjct: 173 QTIAGFVTAWGSLSEERVLA-SGMGASKLKDQGDPYGEQNRRVQLVLLP 220 >gi|84385524|ref|ZP_00988555.1| Outer membrane protein [Vibrio splendidus 12B01] gi|84379504|gb|EAP96356.1| Outer membrane protein [Vibrio splendidus 12B01] Length = 278 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 19/211 (9%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + ++I K+ + A ++KRL +L + Sbjct: 67 AKLHLDALIQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQ 126 Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + S + + + +D + F ++S+ P+ + L + Sbjct: 127 LDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQ----FAENSTEVNPKYMGRLAE 182 Query: 255 IGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +L H + + + GH DA+ N L+L RA + L G+ RI +S Sbjct: 183 ATTLLKEHKSLDLVVTGHADAT---GTEEYNDDLALGRAKQVERYLTIFGLGAQRIKAVS 239 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342 SD NRR+ I + + Sbjct: 240 -VGETVPLFEGESDGTRLTNRRVSIEIISPK 269 >gi|126736947|ref|ZP_01752682.1| OmpA family protein [Roseobacter sp. SK209-2-6] gi|126721532|gb|EBA18235.1| OmpA family protein [Roseobacter sp. SK209-2-6] Length = 187 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ R N RLS RA + +V G RI ++ G+ + ++ Sbjct: 119 ISGHTDS---RASDEYNMRLSERRANAVARVGNSIG---ARIIEVRGYGERDPRKPNNSA 172 Query: 328 N--SANRRIDIL 337 + NRR++I+ Sbjct: 173 ANMAENRRVEII 184 >gi|329850857|ref|ZP_08265702.1| ompA family protein [Asticcacaulis biprosthecum C19] gi|328841172|gb|EGF90743.1| ompA family protein [Asticcacaulis biprosthecum C19] Length = 263 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 205 GLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 VA + + E R+ IS + + + + ++ +L ++ +V+A Sbjct: 126 PAVAGDNARDAAIEVARSCDDRISAAMGKRRLEYRFGTYELIGDSEPLLDELSKVVADCP 185 Query: 264 --EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I G+TDA+ A+ N +SL RA +A L+K GV RI ++ G Sbjct: 186 ADVKLIIAGYTDAT---GDAKANQLISLARAQTAADGLVKRGVDAGRI-QVQGMGGAAPV 241 Query: 322 IASDP--MNSANRRIDI 336 + +ANRRI I Sbjct: 242 ADNATPEGRAANRRIVI 258 >gi|329944220|ref|ZP_08292479.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328530950|gb|EGF57806.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 462 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + VL + E + ++I GHTD N LS RA + Sbjct: 180 FAVDSDQLSAQADSVLAGVVEQIKKYPSGGELTITGHTDDVA---DDAHNQDLSERRAKA 236 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 L +SG ++ +D ANRR+++ ++ + Sbjct: 237 VSGRLKTLTDLSAWKEAVSGKGESSPRVPNDSEENKQANRRVEVTLKPSK 286 >gi|83312092|ref|YP_422356.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] gi|82946933|dbj|BAE51797.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] Length = 167 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + +L + +LA ++ + I GH D + N + RA + Sbjct: 62 LFAAGRLDLDAKARQILDDVAGILAREASIPVIIEGHADDT---GTREYNLAIGERRAET 118 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVED 340 Q L+ GV +RI IS G R + +ANRR+ + +E Sbjct: 119 VRQYLIGRGVDGERIRAISFGKERPRAPGRTKAARAANRRVVVRLEP 165 >gi|163793574|ref|ZP_02187549.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159181376|gb|EDP65891.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 293 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ PE+ L + E++ + I GHTD ++ N L+L RA Sbjct: 192 FEVGGNVLTPESQASLPTLLEIIRQRVLPGVEIAGHTDRVGASSV---NDALALRRAELV 248 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 Q+++ G+S R+ ++ F + + NRR++I V Sbjct: 249 QQMMLDLGIS-RRLIRVDSFGERDPVVPTADGVDEPRNRRVEITV 292 >gi|124002443|ref|ZP_01687296.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123992272|gb|EAY31640.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 756 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 ++ F+ + + I L+ + L + ++I GHTD LS Sbjct: 648 QSVAFFEYNKYELKDKFIKNLEPFIKYLQKNKNAELAIYGHTDQVGTAAACLL---LSQR 704 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSANRRIDILVED 340 RA + Q ++ GV+ RI+ G+ + + D NRRI++L+ + Sbjct: 705 RANAIKQYFVRHGVAAKRITA-KGYGKAKPIWKNEKHDWQAKENRRIELLLLE 756 >gi|284050116|ref|ZP_06380326.1| hypothetical protein AplaP_01445 [Arthrospira platensis str. Paraca] Length = 179 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%) Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ ++ + + + ++ + + I + N F+ S+ P+ + ++ Sbjct: 26 ISGQVRQMRDAQIIPAAFENIPGIKSVFSTLKIDPVRIENRIYFNSGSAQLNPQDLQIIT 85 Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 KI E L + I GHTD R A N +L+L+RA + L K G+ R+ + Sbjct: 86 KIQEFLDRYPQLSLRIIGHTD---LRGNAARNQQLALNRAIAVRDALTKQGIDPKRLEVV 142 Query: 313 SGFAHHRLK 321 + + Sbjct: 143 ---GNSQPP 148 >gi|170696031|ref|ZP_02887168.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170139023|gb|EDT07214.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 646 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 11/106 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-----STEVISIRGHTDASPFRNIARDNWRLSLDR 291 F SS+ L + VL + + G++D + N +LS +R Sbjct: 540 FGSSSARVPAAANEDLGQSARVLNACARNGRVAKLEVAGYSDNV---GGEQANLQLSKER 596 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 A + L+K+GV D + + G+ +D + NRRI+ Sbjct: 597 AEAVRSYLVKAGVPGDSL-RAQGYGQAHPIAGNDTASGRFANRRIE 641 >gi|88705612|ref|ZP_01103322.1| conserved hypothetical protein, secreted [Congregibacter litoralis KT71] gi|88700125|gb|EAQ97234.1| conserved hypothetical protein, secreted [Congregibacter litoralis KT71] Length = 181 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ S+ P + +L + + + GHTD R N L RA + Sbjct: 83 FEFDSATLTPAAQAAVDAHIALLKTNDRSVRLDGHTDE---RGTRDYNMALGERRANAVR 139 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 ++ +GV+ RI +S + + + + S NRR+++ Sbjct: 140 DYMVVNGVASYRIETVS-YGEEQPVAYGSGESSWSQNRRVEL 180 >gi|328469328|gb|EGF40274.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus 10329] Length = 340 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L+ + I GHTD N +S RA Sbjct: 212 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHTDNV---GPRLTNLSVSRLRAQQ 268 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L+ GV+ + I ++ ++ + NRR+ + Sbjct: 269 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 311 >gi|240851216|ref|YP_002972619.1| peptidoglycan-associated lipoprotein [Bartonella grahamii as4aup] gi|240268339|gb|ACS51927.1| peptidoglycan-associated lipoprotein [Bartonella grahamii as4aup] Length = 173 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS + +L + E L H I I GH D R N L R Sbjct: 63 DRVFFSLDSSSLDADAERILTRQAEWLLHYPYYSIMIEGHADE---RGTREYNLALGQRR 119 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A + L+ GVSE RI IS + R D ++ + NRR Sbjct: 120 AVAVRNYLVSLGVSEQRIQTIS-YGKERPVAVCDDISCWNQNRR 162 >gi|29423528|gb|AAO73590.1| lateral flagellar MotY-like protein [Vibrio parahaemolyticus] Length = 340 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L+ + I GHTD N +S RA Sbjct: 212 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHTDNV---GPRLTNLSVSRLRAQQ 268 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L+ GV+ + I ++ ++ + NRR+ + Sbjct: 269 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 311 >gi|28901394|ref|NP_801049.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus RIMD 2210633] gi|153835953|ref|ZP_01988620.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus AQ3810] gi|260362948|ref|ZP_05775817.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus K5030] gi|260880235|ref|ZP_05892590.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus AN-5034] gi|260895352|ref|ZP_05903848.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus Peru-466] gi|28809941|dbj|BAC62882.1| putative sodium-type flagellar protein MotY precursor [Vibrio parahaemolyticus RIMD 2210633] gi|149750707|gb|EDM61452.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus AQ3810] gi|308085759|gb|EFO35454.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus Peru-466] gi|308091961|gb|EFO41656.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus AN-5034] gi|308112265|gb|EFO49805.1| putative sodium-type flagellar protein MotY [Vibrio parahaemolyticus K5030] Length = 340 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L+ + I GHTD N +S RA Sbjct: 212 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHTDNV---GPRLTNLSVSRLRAQQ 268 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L+ GV+ + I ++ ++ + NRR+ + Sbjct: 269 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 311 >gi|49081460|gb|AAT50132.1| PA0973 [synthetic construct] Length = 169 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L S + + + GHTD R N L RA + Sbjct: 69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 125 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS ++ +S + D + + NRR+++ Sbjct: 126 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166 >gi|294636572|ref|ZP_06714935.1| OmpA family protein [Edwardsiella tarda ATCC 23685] gi|291090190|gb|EFE22751.1| OmpA family protein [Edwardsiella tarda ATCC 23685] Length = 162 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 +F + + PE+ + +IG L+ + G+TD + A N +LSL R Sbjct: 55 EKVLFGNNQFVLRPESQAHVAEIGRALSKVAILHARLDGYTDN--YGTDAY-NQQLSLKR 111 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 A L G+ ++ G + + NRR+ I+++ Sbjct: 112 ADKVADALASGGMPRANLT-TRGMGKRDPIADNATRQGRAENRRVAIIIQ 160 >gi|254460338|ref|ZP_05073754.1| OmpA domain protein [Rhodobacterales bacterium HTCC2083] gi|206676927|gb|EDZ41414.1| OmpA domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 594 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 76/265 (28%), Gaps = 9/265 (3%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 + + + + + + T R + Y ++ Sbjct: 301 VIPDASQGPPEFIATLSPEGQVQLRGRVNSKLVRDTADSYAKARFGSGEVYTASRIDESL 360 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 ++ R + L + ++ E+ + + L+ L + Sbjct: 361 PRDWSVRVLAAIETLSMLKNGSVTVTPEKVRVFGDTGVPSAKSDITRLLLEKLGDSKDLS 420 Query: 203 LSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + + + T + ++ I F+ S +L + E+L Sbjct: 421 IEVTYKKKLDPVLGLPTADECEVQVTEIQSGRKITFEPGSGNLDASAESILDDMAEILIK 480 Query: 262 STE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + + I G+TD+ N LS RA + L + V R G+ Sbjct: 481 CPDDMRMEISGYTDSQ---GREVMNQELSQTRAQAVLTALRERRVLMSRYVA-KGYGEEN 536 Query: 320 LK--IASDPMNSANRRIDILVEDRQ 342 +++ ANRRI+ + + Sbjct: 537 PIGDNSTEAGREANRRIEFKLIRPE 561 >gi|15596170|ref|NP_249664.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PAO1] gi|107100429|ref|ZP_01364347.1| hypothetical protein PaerPA_01001454 [Pseudomonas aeruginosa PACS2] gi|116048898|ref|YP_792301.1| peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|218893056|ref|YP_002441925.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa LESB58] gi|254239321|ref|ZP_04932644.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa C3719] gi|254245256|ref|ZP_04938578.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa 2192] gi|296390668|ref|ZP_06880143.1| peptidoglycan-associated lipoprotein [Pseudomonas aeruginosa PAb1] gi|81622520|sp|Q9I4Z4|PAL_PSEAE RecName: Full=Peptidoglycan-associated lipoprotein; Flags: Precursor gi|9946880|gb|AAG04362.1|AE004530_15 Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PAO1] gi|115584119|gb|ABJ10134.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa UCBPP-PA14] gi|126171252|gb|EAZ56763.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa C3719] gi|126198634|gb|EAZ62697.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa 2192] gi|218773284|emb|CAW29096.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa LESB58] Length = 168 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L S + + + GHTD R N L RA + Sbjct: 69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 125 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS ++ +S + D + + NRR+++ Sbjct: 126 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166 >gi|300114482|ref|YP_003761057.1| chemotaxis protein MotB-like protein [Nitrosococcus watsonii C-113] gi|299540419|gb|ADJ28736.1| chemotaxis protein MotB-related protein [Nitrosococcus watsonii C-113] Length = 250 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 70/199 (35%), Gaps = 46/199 (23%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVA-----DNIVKGVLFETTRTGILISIIDQ------ 231 + A+ L KKI + L +I+ + E + I I I D Sbjct: 35 LAAVALIIELTQTQKKIEQDIDQLKNAEQARRDILHEIRDELAKRNIKILIADNDTVLRI 94 Query: 232 -RNTPMFDKSSSIP--LPETIVVLQKIGEVLAHSTEV-----------------ISIRGH 271 +T F +S + + IG+VL + + I GH Sbjct: 95 PESTLAFASNSYALPADEKVRSSVVAIGQVLHAAINRSFKPGVSEKRRFDYLDTVFIEGH 154 Query: 272 TDASPFRNIARDNWRLSLDRAYS----------AYQVLMK-SGVSEDRISKISGFAHHRL 320 TD+ P + I + NW LS RA S VL S D++ +SG+A R Sbjct: 155 TDSRPTKRI-KGNWGLSTFRAISLWEYWDDVLDVSPVLTDMSNAFGDKLFSVSGYAATRR 213 Query: 321 KIASD---PMNSANRRIDI 336 ++ NRRIDI Sbjct: 214 VNEAEITREDRRENRRIDI 232 >gi|262403725|ref|ZP_06080283.1| protein F-related protein [Vibrio sp. RC586] gi|262350229|gb|EEY99364.1| protein F-related protein [Vibrio sp. RC586] Length = 199 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + R N +LS RA + Sbjct: 94 FETGSAKVSASSKRWLDSMARFLASESGIDIVLEGHTDNT---GAERFNDKLSERRASAV 150 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 VL++S V+++ I GF + + NRR+++ Sbjct: 151 KTVLVQSRVAQNAIY-TRGFGESVPACTNSTVKGRACNRRVEV 192 >gi|322420089|ref|YP_004199312.1| hypothetical protein GM18_2585 [Geobacter sp. M18] gi|320126476|gb|ADW14036.1| conserved repeat domain protein [Geobacter sp. M18] Length = 1890 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E +L VL E + + GHTD + N LS R +A Sbjct: 1620 FIFDKSVLTTEAKRLLSGAARVLRERPRERVILEGHTDG--IGTVEY-NMALSKRRCDAA 1676 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + L++ GV+ R+ + + R + + NRR+++ Sbjct: 1677 AEYLIRVEGVAPSRLLR-RWYGKSRPVADNVTTSGRRLNRRVEL 1719 >gi|148976136|ref|ZP_01812879.1| outer membrane protein [Vibrionales bacterium SWAT-3] gi|145964531|gb|EDK29785.1| outer membrane protein [Vibrionales bacterium SWAT-3] Length = 277 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 19/211 (9%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + ++I K+ + A ++KRL +L + Sbjct: 66 AKLHLDALIQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELELQ 125 Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + S + + + + +D + F +S P+ + L + Sbjct: 126 LDYVTSQARCEPPKNENQFRMQLSIIQQLYDLLNVDNQ----FAHNSIEVNPKYMGKLAE 181 Query: 255 IGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +L + + + + GH+DA+ N +L+L RA + L G+S RI +S Sbjct: 182 ASYILKDNKSLELIVTGHSDAT---GSEEYNDKLALGRAQQVERYLTIFGLSPSRIKAVS 238 Query: 314 GFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 + + NRR+ I V + Sbjct: 239 -VGETVPLFEGESEGTRLTNRRVSIEVISPE 268 >gi|222823912|ref|YP_002575486.1| chemotaxis protein MotB, [Campylobacter lari RM2100] gi|222539134|gb|ACM64235.1| chemotaxis protein MotB, putative [Campylobacter lari RM2100] Length = 316 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 113/317 (35%), Gaps = 47/317 (14%) Query: 33 WKIVYADFMTVLMAFFLVM-------WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 W I YAD M L+ F+++ +++ +D K + Sbjct: 14 W-IAYADLMAGLLFIFILLIGAIVVKYVLTQSDLQIIKE--------------------N 52 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 Q ER +NK +L+ E I KN +++ + + + + + Sbjct: 53 LQKQEERLRENKEELNQKEDILKNLSQKLNNTSSTLDDVNKQKQALEANITKLNQDLNSS 112 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL-- 203 +D + L + ++ I + E+ F SK K L + ++ +++L K + + Sbjct: 113 LDEKDQQIFALLERLNKKDEEIKELESNFEEAKSKIKELGLIKENTIKNLQAKFDTNITL 172 Query: 204 -SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 S A + VLF+T + + T + +L+ +L Sbjct: 173 DSNTGAIVLPSEVLFDTNSFTLKAQAKENLKTIL--------TQYFDNILKDE-NILNSI 223 Query: 263 TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE--DRISKISGFAHHRL 320 I I GHTD+ N LS RAY+ + ++ SG ++ + Sbjct: 224 EN-IVIEGHTDS---AGSYIYNLDLSQKRAYAVMSFIHSFYKDPRLQKLLMASGRSYSDV 279 Query: 321 KIASDPMN-SANRRIDI 336 + A+RRI+I Sbjct: 280 ITKDGKEDKEASRRIEI 296 >gi|254473105|ref|ZP_05086503.1| OmpA/MotB [Pseudovibrio sp. JE062] gi|211957826|gb|EEA93028.1| OmpA/MotB [Pseudovibrio sp. JE062] Length = 160 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 8/113 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + F + S VL K + L H I+I GH D R + N L R Sbjct: 53 DRVFFLNNQSSLDGAARGVLDKQAQWLQHYKNYSITIEGHADE---RGTRQYNIALGARR 109 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 A + + L+ G+S RI IS + R + + S NRR + V + Q Sbjct: 110 AAAVREYLVAKGISPSRIKTIS-YGKERPVAVCNAASCWSQNRR-AVTVLNGQ 160 >gi|260752248|ref|YP_003225141.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551611|gb|ACV74557.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 366 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD PE +L + + + + + + G+TD A+ N LS RA S Sbjct: 259 FFDFDKYNITPEAASILDNVASSYSQTGQARVVVAGYTDT---AGPAKYNMGLSQRRADS 315 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 L+ GV +D + + L + + NRR++I Sbjct: 316 VKAYLVGKGVPDDAM-ATEAYGKTHLLVQTADGVREPQNRRVEI 358 >gi|218679284|ref|ZP_03527181.1| flagellar motor protein MotB [Rhizobium etli CIAT 894] Length = 200 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 72/182 (39%), Gaps = 2/182 (1%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 F + TA K ++ + + +++ E + + + Q+ + Sbjct: 19 FWTKQVEVTTAGKSAPPGKSDQQAAESGTTEIAKVEDMKPIPLTTDQKAVAQETTETKET 78 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKILAMK 187 + ++ + + D + G +K+ + +++ + + + Sbjct: 79 TETKGAAEAKDGKAPGDKKADDKKAGDKKTGDKKAGDKNADAQKDADHQKDADKSAAEAQ 138 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +K+ + L +I+ + G VA + +G+ + G+L+SI DQ + MF+ S++P E Sbjct: 139 EQKQAEQLQAEIAQQIGG-VAGKLAEGLTVTASEGGLLVSISDQTDDSMFNIGSAVPRQE 197 Query: 248 TI 249 + Sbjct: 198 MV 199 >gi|104783066|ref|YP_609564.1| peptidoglycan-associated lipoprotein [Pseudomonas entomophila L48] gi|95112053|emb|CAK16780.1| peptidoglycan-associated lipoprotein precursor [Pseudomonas entomophila L48] Length = 165 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 66 FEYDSSDLKPEAMRSLDVHAKDLKSNGNRVVLEGNTDE---RGTREYNMALGERRAKAVQ 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163 >gi|304410057|ref|ZP_07391676.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|307302230|ref|ZP_07581988.1| OmpA/MotB domain protein [Shewanella baltica BA175] gi|304351466|gb|EFM15865.1| OmpA/MotB domain protein [Shewanella baltica OS183] gi|306914268|gb|EFN44689.1| OmpA/MotB domain protein [Shewanella baltica BA175] Length = 196 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + + L + LA + +++ GHTD N++LSL RA + Sbjct: 93 FEFAIAEVDFSQWKTLALVKAYLAANDVALTLVGHTD---IVGTPEFNYQLSLQRAQNVK 149 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 ++L++ G + +R + + G + S NRR+ +V ++ Sbjct: 150 RILVEDYGFNPNRFT-VMGKGISEPVADNRSSEGRSLNRRVQFIVNNK 196 >gi|317153134|ref|YP_004121182.1| peptidoglycan-associated lipoprotein [Desulfovibrio aespoeensis Aspo-2] gi|316943385|gb|ADU62436.1| peptidoglycan-associated lipoprotein [Desulfovibrio aespoeensis Aspo-2] Length = 183 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 K++ PP ++ ++ + K + +TL+ + E T ++ Sbjct: 24 AKKKTTTTPPGAQVEVTDESQWKSSSSDSSMDEATLASEAERRAKTEAVTELTS----VT 79 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWR 286 I F S E +L ++ + + + GH D R N Sbjct: 80 IN-------FAFDSYELNSEARSILALKANIMRRYTDVRVVVEGHCDE---RGTEEYNLA 129 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 L RA +AY+ L+ GV R+S +S F + + ++ + NRR + +V Sbjct: 130 LGERRARAAYEHLVILGVDPGRMSIVS-FGEEKPLDSAHNETAWAKNRRAEFVV 182 >gi|254492390|ref|ZP_05105562.1| OmpA family protein [Methylophaga thiooxidans DMS010] gi|224462282|gb|EEF78559.1| OmpA family protein [Methylophaga thiooxydans DMS010] Length = 281 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P L ++ E + S I I HTD R N LS RA S Sbjct: 177 FEIEQATLTPVAKKALTRLAEYVKVDDSINQIKIASHTDN---HGRRRLNEPLSDARALS 233 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 + L+ +++ I+ + + ++ + NRR +I + Sbjct: 234 IKRFLITEFEIPEQLISINSYVEAKPTASNKTPLGRAKNRRAEITLVR 281 >gi|254453865|ref|ZP_05067302.1| OmpA domain protein [Octadecabacter antarcticus 238] gi|198268271|gb|EDY92541.1| OmpA domain protein [Octadecabacter antarcticus 238] Length = 311 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ LQ + + L + + +++ GHTD F N LS RA S Sbjct: 206 FETGSAQLGDAIFGSLQYLADYLIANPDRTVALVGHTD---FFGSLDGNIALSKRRAGSV 262 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDRQ 342 + L+ + G + ++ + ANRR+++++ Q Sbjct: 263 LERLVTTYDIPRHQLDAQGMGYLSPVASNLTEEGREANRRVEVIITSTQ 311 >gi|313105860|ref|ZP_07792123.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa 39016] gi|310878625|gb|EFQ37219.1| Peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa 39016] Length = 169 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L S + + + GHTD R N L RA + Sbjct: 70 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 126 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS ++ +S + D + + NRR+++ Sbjct: 127 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 167 >gi|157373855|ref|YP_001472455.1| OmpA/MotB domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316229|gb|ABV35327.1| OmpA/MotB domain protein [Shewanella sediminis HAW-EB3] Length = 226 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++ TR+G I + N F + VL + V + +++ G Sbjct: 96 LQSTGVSVTRSGDNIVLN-MPNEVTFGVDQTDLSSGAKRVLNSVALVAKEYDQTQLNVLG 154 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMN 328 +TD+ N RLS RA L+ + R+ G R A+ Sbjct: 155 YTDS---SGAESYNLRLSKIRAIEVGNYLVAQKIEYGRVKS-EGLGESRPIATNATAEGR 210 Query: 329 SANRRIDILV 338 + NRR++I++ Sbjct: 211 AQNRRVEIVL 220 >gi|163732848|ref|ZP_02140293.1| OmpA domain protein [Roseobacter litoralis Och 149] gi|161394208|gb|EDQ18532.1| OmpA domain protein [Roseobacter litoralis Och 149] Length = 176 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + + +I +VL + ++GHTD+ + R LS RA S Sbjct: 48 FEPGSATIDAAALTTMDQIADVLRVCGDLKLEVQGHTDSQGREEMNRS---LSQARAQSV 104 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQ 342 L V G+ +D ANRRI+ + + Sbjct: 105 LNELRARKVLTSNFIA-KGYGEANPIADNDTEEGREANRRIEFKLIRPE 152 >gi|303325524|ref|ZP_07355967.1| OmpA family protein [Desulfovibrio sp. 3_1_syn3] gi|302863440|gb|EFL86371.1| OmpA family protein [Desulfovibrio sp. 3_1_syn3] Length = 332 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S + + +L + ++ + + + G TD + N LS +RA + Sbjct: 232 FAFNSYALDGKAMGILNEAASLIKANPNKRVILNGWTD---WIGTDAYNKVLSQNRANAV 288 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L K G+ R++ I + ++ NRR +I Sbjct: 289 KNYLEKQGIPASRMTAIGRGKSFKYDNKTEEGRYMNRRTEI 329 >gi|113474200|ref|YP_720261.1| OmpA/MotB [Trichodesmium erythraeum IMS101] gi|110165248|gb|ABG49788.1| OmpA/MotB [Trichodesmium erythraeum IMS101] Length = 246 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 10/249 (4%) Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157 I K + K+ + + + ++ + + E K + + + + Sbjct: 3 IAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLT--EAEKI 60 Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGLVADNIVKGVL 216 T+L++ + + + + E L + R L+ I+ L+ + N K Sbjct: 61 ELETELKQLQAQLKTLIVRTTAIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRN 120 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDAS 275 ++ ++ + +F+ S+ + V++ I E+ + +IS+ G+TD Sbjct: 121 QYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLIRELRNYQDVIISVSGYTDN- 179 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 R A+ N S +A + L K R+ I G+ R +D NRR Sbjct: 180 --RGKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAI-GYGESRPIAENDSQTNRQRNRR 236 Query: 334 IDILVEDRQ 342 I++ V R+ Sbjct: 237 IEVKVHLRK 245 >gi|317153138|ref|YP_004121186.1| OmpA/MotB domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943389|gb|ADU62440.1| OmpA/MotB domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 244 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 8/183 (4%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 ++S ++ + I + + + + + ++ + GV Sbjct: 63 SQQSADEAQAASALDPLIGLIGQLSSRAGANGSQETVRVADNQVLFRSRTDGVTVVREGQ 122 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT--DASPFRNI 280 G I + R F + + PE+ L +I EV+ S + + G+ D Sbjct: 123 G-RIRVT-LRGDLFFAVNEAGLAPESGQYLSEIAEVVRLSVGTVHVIGYASEDEGGNEAG 180 Query: 281 ARDNWRLSLDRAYSAY-QVLMKSGVSEDRISKISGFA--HHRLKIASDPMNSANRRIDIL 337 R + LS RA Q++ + V R+ I+G H L + + NRR++I+ Sbjct: 181 TRQGFALSTGRATEVADQLMTRFKVDPRRVV-ITGRGRLHPELPGTTPANQAMNRRVEIV 239 Query: 338 VED 340 + + Sbjct: 240 ITN 242 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 56/197 (28%), Gaps = 4/197 (2%) Query: 27 PNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDE 86 + +W + +AD M V+ F+V++I ++T D K F+ + A+ + Sbjct: 24 ASGANAWAVPWADLMMVMFVLFVVLFIYSSTHQDVKV----LFSQQSADEAQAASALDPL 79 Query: 87 QNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNS 146 + S E + + S R ++ N Sbjct: 80 IGLIGQLSSRAGANGSQETVRVADNQVLFRSRTDGVTVVREGQGRIRVTLRGDLFFAVNE 139 Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 E G+ L + ++ + + E ++ + + L Sbjct: 140 AGLAPESGQYLSEIAEVVRLSVGTVHVIGYASEDEGGNEAGTRQGFALSTGRATEVADQL 199 Query: 207 VADNIVKGVLFETTRTG 223 + V T G Sbjct: 200 MTRFKVDPRRVVITGRG 216 >gi|146338950|ref|YP_001203998.1| putative outer membrane protein [Bradyrhizobium sp. ORS278] gi|146191756|emb|CAL75761.1| conserved hypothetical protein; putative outer membrane protein [Bradyrhizobium sp. ORS278] Length = 198 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292 FD +S+ ++ +Q++G+ L+ + GHTD N LS RA Sbjct: 88 FDYNSAEISKGSMQAVQELGKALSD-PNLKGSTFVVAGHTDGI---GSDGFNQDLSERRA 143 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + + L++ G+ + + G+ +LK A++P + NRR+ ++ D + Sbjct: 144 DTIKRYLVEKYGLVGQDLVAV-GYGKTKLKDAANPADPLNRRVQVVNMDTK 193 >gi|308049357|ref|YP_003912923.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307631547|gb|ADN75849.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 354 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F SS + + I +L + + I+G D++ ++ N LS RA + Sbjct: 249 FGFDSSELT-DLSPLSDIIERLLRYPDAQVFIQGFADST---GRSQYNLSLSHRRAQAVA 304 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L GV DRI +I F I + + NRR+ + + Sbjct: 305 DYLQSQGVEPDRI-RIEDFGERLPVIDNATAEHRAQNRRVHLYI 347 >gi|306820525|ref|ZP_07454158.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551439|gb|EFM39397.1| outer membrane porin F [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 437 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI---SIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + + VL K+ +VL I I GHTD+ + N LS +RA Sbjct: 334 LFDVNKYNIRADANDVLMKLIDVLKK--GKIQKFEIYGHTDSD---DTDEYNQVLSENRA 388 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 S L+K+G++ D GF + + NRR++I++ Sbjct: 389 NSVKDFLVKNGITAD--ITTKGFGEKKPIATNSTKEGKQLNRRVEIII 434 >gi|298292993|ref|YP_003694932.1| peptidoglycan-associated lipoprotein [Starkeya novella DSM 506] gi|296929504|gb|ADH90313.1| peptidoglycan-associated lipoprotein [Starkeya novella DSM 506] Length = 164 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD + P+ L K + L H +I GH D R N L R Sbjct: 55 DRVFFDSDQTDLTPQAQATLDKQAQWLNHYGKYTFTIEGHADE---RGTREYNIALGARR 111 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A S L++ GVS R+ IS + R + ++ S NRR + V + G Sbjct: 112 AQSVRDYLVQRGVSASRMRTIS-YGKERPVAVCNDISCWSQNRR-AVTVLNATG 163 >gi|117618280|ref|YP_855820.1| major outer membrane protein OmpAII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559687|gb|ABK36635.1| major outer membrane protein OmpAII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 351 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + PE + L+ + + +A + G+TD +N LS RA Sbjct: 223 LFAFGKAELKPEGMQALESLYQQIADVKPKDGNAVVMGYTDRI---GSDANNQALSEARA 279 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + L+ G+ D++ I G S D + + +RR+++ V Sbjct: 280 STVANFLIGKGLPADKV-SIQGNGESNPVTGSQCDAIKARAALIDCLAPDRRVEVRVTGT 338 Query: 342 QG 343 QG Sbjct: 339 QG 340 >gi|308050234|ref|YP_003913800.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] gi|307632424|gb|ADN76726.1| OmpA/MotB domain protein [Ferrimonas balearica DSM 9799] Length = 204 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD S+ P ++ ++Q +G+ L + + I GHTDA N LSL RA Sbjct: 94 FDSGSARLRPSSLALVQTLGDALTDPRFNGQAFLIAGHTDA---DGDEEYNLGLSLRRAN 150 Query: 294 SAY-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + +L + ++ D++ K+ GF ++ NRR+++ Sbjct: 151 TVRDYLLQHTSLTPDQL-KVVGFGETTPLASNHERQGKQQNRRVEV 195 >gi|126175214|ref|YP_001051363.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|153001540|ref|YP_001367221.1| OmpA/MotB domain-containing protein [Shewanella baltica OS185] gi|160876276|ref|YP_001555592.1| OmpA/MotB domain-containing protein [Shewanella baltica OS195] gi|217972531|ref|YP_002357282.1| OmpA/MotB domain-containing protein [Shewanella baltica OS223] gi|125998419|gb|ABN62494.1| OmpA/MotB domain protein [Shewanella baltica OS155] gi|151366158|gb|ABS09158.1| OmpA/MotB domain protein [Shewanella baltica OS185] gi|160861798|gb|ABX50332.1| OmpA/MotB domain protein [Shewanella baltica OS195] gi|217497666|gb|ACK45859.1| OmpA/MotB domain protein [Shewanella baltica OS223] gi|315268465|gb|ADT95318.1| OmpA/MotB domain protein [Shewanella baltica OS678] Length = 196 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + + L + LA + +++ GHTD N++LSL RA + Sbjct: 93 FEFAIAEVDFSQWKTLALVKAYLAANDVALTLVGHTD---IVGTPEFNYQLSLQRAQNVK 149 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 ++L++ G + +R + + G + S NRR+ +V ++ Sbjct: 150 RILVEDYGFNPNRFT-VMGKGISEPVADNRSSEGRSLNRRVQFIVNNK 196 >gi|170727083|ref|YP_001761109.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169812430|gb|ACA87014.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 289 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 + K+ E L++ EV + I +TD+ R+I N ++S +RA S + Sbjct: 187 GGKELTRYAKAQIAKVQEYLSYDPEVELVLIDAYTDSYGGRSI---NQKISEERADSVKE 243 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + +G++++RI + G ++ + NRR+ I + Sbjct: 244 FFISAGITQERIHTV-GHGERHHVASNATIDERARNRRVVIRI 285 >gi|166714360|gb|ABY87946.1| outer membrane protein [Acinetobacter sp. wpo2421] Length = 319 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S P+ + K+ E L+ I GHTD + + N RLSL RA Sbjct: 233 RVFFDTNKSDIKPQYKSEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 289 Query: 293 YSAYQVLM-KSGVSEDRISKISGFAHHRLKI 322 S L+ + V R+ GFA + Sbjct: 290 NSVKSALVNEYNVDASRL-STQGFAWDQPIA 319 >gi|260063550|ref|YP_003196630.1| OmpA family protein [Robiginitalea biformata HTCC2501] gi|88782994|gb|EAR14168.1| OmpA family protein [Robiginitalea biformata HTCC2501] Length = 652 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + +QK+ + I HTD+ R N LS RA S Sbjct: 545 FDFDKANIRPDAEIEIQKVIAAMEKYPSLRIKANSHTDS---RGPDAYNLALSQRRADST 601 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVED 340 + ++ G++ +R+ GF RL D NRR + ++ + Sbjct: 602 VRYMISKGIAPERLEG-EGFGESRLINRCDDGVPCSAQEHELNRRSEFIILE 652 >gi|83954367|ref|ZP_00963087.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp. NAS-14.1] gi|83841404|gb|EAP80574.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp. NAS-14.1] Length = 665 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTP 235 P + + + ++ + L + + L G A + + + + I + + Sbjct: 496 PQVRPQANTLASQQNEEALRAALQTQLRGDQAQRYSLRQVRDVRQVRALAPEI--ELDAV 553 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLD 290 F S+ PE L KIG ++++ + VI + GHTDA N N LS Sbjct: 554 RFATGSAAIQPEQARALSKIGTAISNAIKDDPRTVILVEGHTDA--VGNAGY-NLALSDR 610 Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 RA + L + V + G+ LK+ ++ ANRR Sbjct: 611 RAETVALALTEYFDVPPANLI-TQGYGESALKVPTETAEPANRR 653 >gi|262190496|ref|ZP_06048743.1| protein F-related protein [Vibrio cholerae CT 5369-93] gi|262033626|gb|EEY52117.1| protein F-related protein [Vibrio cholerae CT 5369-93] Length = 204 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 99 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197 >gi|229513150|ref|ZP_04402615.1| protein F-related protein [Vibrio cholerae TMA 21] gi|229349560|gb|EEO14515.1| protein F-related protein [Vibrio cholerae TMA 21] Length = 204 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 99 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197 >gi|153829691|ref|ZP_01982358.1| OmpA family protein [Vibrio cholerae 623-39] gi|148874812|gb|EDL72947.1| OmpA family protein [Vibrio cholerae 623-39] Length = 207 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 102 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 158 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 159 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 200 >gi|15601417|ref|NP_233048.1| protein F-related protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|153211953|ref|ZP_01947800.1| OmpA family protein [Vibrio cholerae 1587] gi|153800869|ref|ZP_01955455.1| OmpA family protein [Vibrio cholerae MZO-3] gi|153818096|ref|ZP_01970763.1| OmpA family protein [Vibrio cholerae NCTC 8457] gi|153824386|ref|ZP_01977053.1| OmpA family protein [Vibrio cholerae MZO-2] gi|227812226|ref|YP_002812236.1| protein F-related protein [Vibrio cholerae M66-2] gi|254285685|ref|ZP_04960648.1| OmpA family protein [Vibrio cholerae AM-19226] gi|254849820|ref|ZP_05239170.1| OmpA family protein [Vibrio cholerae MO10] gi|298499464|ref|ZP_07009270.1| OmpA family protein [Vibrio cholerae MAK 757] gi|9658075|gb|AAF96560.1| protein F-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124117029|gb|EAY35849.1| OmpA family protein [Vibrio cholerae 1587] gi|124123579|gb|EAY42322.1| OmpA family protein [Vibrio cholerae MZO-3] gi|126511364|gb|EAZ73958.1| OmpA family protein [Vibrio cholerae NCTC 8457] gi|149741940|gb|EDM55969.1| OmpA family protein [Vibrio cholerae MZO-2] gi|150424182|gb|EDN16120.1| OmpA family protein [Vibrio cholerae AM-19226] gi|227011368|gb|ACP07579.1| protein F-related protein [Vibrio cholerae M66-2] gi|254845525|gb|EET23939.1| OmpA family protein [Vibrio cholerae MO10] gi|297541445|gb|EFH77496.1| OmpA family protein [Vibrio cholerae MAK 757] Length = 207 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 102 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 158 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 159 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 200 >gi|121585594|ref|ZP_01675390.1| protein F-related protein [Vibrio cholerae 2740-80] gi|229506176|ref|ZP_04395685.1| protein F-related protein [Vibrio cholerae BX 330286] gi|229509966|ref|ZP_04399446.1| protein F-related protein [Vibrio cholerae B33] gi|229516473|ref|ZP_04405920.1| protein F-related protein [Vibrio cholerae RC9] gi|229605715|ref|YP_002876419.1| protein F-related protein [Vibrio cholerae MJ-1236] gi|255746568|ref|ZP_05420515.1| protein F-related protein [Vibrio cholera CIRS 101] gi|262158841|ref|ZP_06029954.1| protein F-related protein [Vibrio cholerae INDRE 91/1] gi|121550211|gb|EAX60225.1| protein F-related protein [Vibrio cholerae 2740-80] gi|229346354|gb|EEO11325.1| protein F-related protein [Vibrio cholerae RC9] gi|229352411|gb|EEO17351.1| protein F-related protein [Vibrio cholerae B33] gi|229356527|gb|EEO21445.1| protein F-related protein [Vibrio cholerae BX 330286] gi|229372201|gb|ACQ62623.1| protein F-related protein [Vibrio cholerae MJ-1236] gi|255736322|gb|EET91720.1| protein F-related protein [Vibrio cholera CIRS 101] gi|262029414|gb|EEY48065.1| protein F-related protein [Vibrio cholerae INDRE 91/1] Length = 204 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 99 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197 >gi|323136170|ref|ZP_08071252.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] gi|322398244|gb|EFY00764.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] Length = 288 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 47/239 (19%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 F+ S + + + +D + E + P + +A +R++ Sbjct: 37 FFASQFRDPDKVSRKEYESIVRERDKLEKEVRELREQLKRLANRPVETYLAAVANQRERI 96 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L+DL K+ + L V+ + + +F SS P+ + Sbjct: 97 LKDLQSKLKADFPDL-------QVVISEEMDALRF-----KGDGLFKTGSSELRPDKRRI 144 Query: 252 LQKIGEVLAH----------------------STEVISIRGHTDASPFRNIARDNWRLSL 289 ++ I L E + + GHTD+ N LS Sbjct: 145 VESIATRLGEVLPCYTLGPRSSWNSRCNAAGAVIEAVLVEGHTDS---DGQDNSNITLST 201 Query: 290 DRAYSAYQVLMKS-----GVSEDR---ISKISGFAHHRLKIASDPMN--SANRRIDILV 338 +RA + + K DR + ++G+ R + + NRRID+ + Sbjct: 202 NRANETFFAMTKHEPALVDFRNDRAQPVLSVAGYGRMRPVADNATQEGKATNRRIDLRI 260 >gi|326794029|ref|YP_004311849.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] gi|326544793|gb|ADZ90013.1| OmpA/MotB domain protein [Marinomonas mediterranea MMB-1] Length = 272 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 66/150 (44%), Gaps = 9/150 (6%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPMFDKSSSIPLPETI 249 L+ L ++I + GLV + L E + ++ ++++ + F +S+ Sbjct: 99 LRALDQQIENAEKGLVFLHARTTCLGEAHDDVLADILPLLERISRTNFASASAAMPDAMP 158 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L ++ + L + +++ GHTD+ +N L+LDRA + + L+ V + Sbjct: 159 PLLDELAKWLILNPHYKVTLVGHTDSQ---GSIEENEHLALDRAATISRYLIAHNVDAHQ 215 Query: 309 ISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + + +G + S NRR+++ Sbjct: 216 L-RCNGEGPWNPISHNASEQSRKYNRRVEV 244 >gi|293396726|ref|ZP_06641002.1| outer membrane protein A [Serratia odorifera DSM 4582] gi|291420990|gb|EFE94243.1| outer membrane protein A [Serratia odorifera DSM 4582] Length = 364 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 17/122 (13%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ S PE L ++ L+ + + G+TD P N +LS Sbjct: 235 KSDVLFNFGKSSLKPEGQQALDQLYTQLSSMDPKDGSVVVLGYTD--PV-GKDAANQKLS 291 Query: 289 LDRAYSAYQVLMKSGVSEDRIS--------KIS---GFAHHRLKIASDPMNSANRRIDIL 337 RA S L+ G+ D+IS +++ G+ + R A + NRR++I Sbjct: 292 EARARSVVDYLVSKGIPADKISARGMGEADQVTDSCGYKNGRATKAQIECLAPNRRVEIE 351 Query: 338 VE 339 V+ Sbjct: 352 VK 353 >gi|189353747|ref|YP_001949374.1| putative OmpA family transmembrane protein [Burkholderia multivorans ATCC 17616] gi|189337769|dbj|BAG46838.1| putative OmpA family transmembrane protein [Burkholderia multivorans ATCC 17616] Length = 266 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 15/113 (13%) Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F KSS LP L I ++ A T I + GHTD N LS RA Sbjct: 154 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIDVVGHTDRI---GSDESNRALSRARAE 210 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338 + + L+ G+ RI + G + P S +RR+ I V Sbjct: 211 TVKRYLVAHGLDAARI-RTEGAGSSQPVSHCPPGESPAVIACLQKDRRVTITV 262 >gi|332663673|ref|YP_004446461.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332487|gb|AEE49588.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 846 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 PE+ L + +++ E VI + HTD +R N LS RA SA + L+ Sbjct: 554 DKITPESEPDLNLVLDLMKKYPEMVIELSSHTD---YRGRDEYNQDLSQRRAESARKWLL 610 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA 330 + G++ RI + G+ + K ++ M S Sbjct: 611 QKGIASSRI-QAKGYGEAQPKPVNEKMASE 639 >gi|312882154|ref|ZP_07741903.1| hypothetical protein VIBC2010_06184 [Vibrio caribbenthicus ATCC BAA-2122] gi|309370200|gb|EFP97703.1| hypothetical protein VIBC2010_06184 [Vibrio caribbenthicus ATCC BAA-2122] Length = 215 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S L ++ E L + I+I GHTD + N L L RA +A Sbjct: 106 FGFDQSNLTAMGRDALSQLAESLKNEDSAIAIEGHTDN---KGSEGYNQALGLRRALAAS 162 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L+ GV +RI + + + +++ + NRR +I Sbjct: 163 GALLTEGVDANRIV-VRSYGENLPIATNSTEEGRAQNRRSEI 203 >gi|152986859|ref|YP_001349884.1| peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PA7] gi|150962017|gb|ABR84042.1| peptidoglycan associated lipoprotein OprL [Pseudomonas aeruginosa PA7] Length = 169 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L S + + + GHTD R N L RA + Sbjct: 70 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 126 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS ++ +S + D + + NRR+++ Sbjct: 127 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 167 >gi|187921498|ref|YP_001890530.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans PsJN] gi|187719936|gb|ACD21159.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 371 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 16/111 (14%) Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD+ + LP L ++ L + +V ISI G+TD N +LS RA Sbjct: 237 FDRGDLAGMLPAGKAKLDELIRSLKQADDVTGISIDGYTDRL---GSDSYNRQLSAKRAE 293 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRIDI 336 + + L GVS + G + +D +A NRR+++ Sbjct: 294 TVKRYLQSGGVSP--VISTRGHGKEDPVVQCNDHNRAALIACLAPNRRVEL 342 >gi|330445542|ref|ZP_08309194.1| peptidoglycan-associated lipoprotein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489733|dbj|GAA03691.1| peptidoglycan-associated lipoprotein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 180 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 7/103 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRA 292 T F +S PE +L+ L + + GH D R N L RA Sbjct: 77 TVFFKFDNSEIQPEYQAMLEAHAAYLRDHPSVKVIVEGHADE---RGTPEYNIALGERRA 133 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 + Q L GV ++S +S + + + +D + NRR Sbjct: 134 TAVAQYLQALGVPASQLSIVS-YGEEKPLVLGHTDADYAKNRR 175 >gi|315608144|ref|ZP_07883136.1| lipoprotein PG3 [Prevotella buccae ATCC 33574] gi|315250113|gb|EFU30110.1| lipoprotein PG3 [Prevotella buccae ATCC 33574] Length = 238 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + + K++ +S + + G+ + + +F + S + Sbjct: 86 MDKVKKEVEQQVSNAKVEEVTDA-------NGLKAVKVTFDSGLLFPLNKSTLSASSKTE 138 Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K VL + + I+G+TD + + N LS RA S L K GV Sbjct: 139 LAKFATVLKNDPQLAVDIQGYTDRT---GGDKINIPLSQSRAESVASYLRKQGVGSSSFK 195 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++GF +I + ++ NRR+++ + Q Sbjct: 196 NVTGFG-SANEIENAAVSQVNRRVEVYLYASQ 226 >gi|288925106|ref|ZP_06419042.1| lipoprotein PG3 [Prevotella buccae D17] gi|288338296|gb|EFC76646.1| lipoprotein PG3 [Prevotella buccae D17] Length = 238 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 12/152 (7%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + + K++ +S + + G+ + + +F + S + Sbjct: 86 MDKVKKEVEQQVSNAKVEEVTDA-------NGLKAVKVTFDSGLLFPLNKSTLSASSKTE 138 Query: 252 LQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L K VL + + I+G+TD + + N LS RA S L K GV Sbjct: 139 LAKFATVLKNDPQLAVDIQGYTDRT---GGDKINIPLSQSRAESVASYLRKQGVGSSSFK 195 Query: 311 KISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 ++GF +I + ++ NRR+++ + Q Sbjct: 196 NVTGFG-SANEIENAAISQVNRRVEVYLYASQ 226 >gi|282879247|ref|ZP_06287997.1| OmpA family protein [Prevotella buccalis ATCC 35310] gi|281298640|gb|EFA91059.1| OmpA family protein [Prevotella buccalis ATCC 35310] Length = 703 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 I++ + +D + PE+ L ++ ++L + V I + H D ++ N Sbjct: 527 ITVPVLIDNIFYDFDKATLRPESKQALDELVKLLNENGNVTIELSAHCD---YKGSKEYN 583 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 +L+ RA S Q L+ G+++DR+S + G+ + K+ Sbjct: 584 KQLAQRRAESVVQYLIAGGIAKDRLSPV-GYGKEKPKV 620 >gi|297580458|ref|ZP_06942385.1| OmpA family protein [Vibrio cholerae RC385] gi|297536104|gb|EFH74938.1| OmpA family protein [Vibrio cholerae RC385] Length = 207 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 102 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 158 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 159 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 200 >gi|332528331|ref|ZP_08404331.1| OmpA/MotB [Hylemonella gracilis ATCC 19624] gi|332042202|gb|EGI78528.1| OmpA/MotB [Hylemonella gracilis ATCC 19624] Length = 186 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE +++ L+ + I GHTD R N L RA + Sbjct: 85 FDYDSYVIKPEFQKLIEAQARYLSSDPALRVVIEGHTDE---RGGREYNLALGQRRAEAV 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + L GV++ +I +S F + +++ S NRR +I Sbjct: 142 RRALSLLGVADTQIDAVS-FGEEKPVSEGSNESAWSQNRRAEI 183 >gi|70728662|ref|YP_258411.1| OmpA family protein [Pseudomonas fluorescens Pf-5] gi|68342961|gb|AAY90567.1| OmpA family protein [Pseudomonas fluorescens Pf-5] Length = 418 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 ++ LP T+ ++ + + + + I GH DA+ N +LS DRA S + Sbjct: 245 AMLLPVTLGPFTRVAKAVEGDPKTAVLILGHADAT---GPTLANQKLSRDRAQSVAAIFS 301 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 SG+ +DR+ + G + A+D S NRR++I++ R Sbjct: 302 LSGLKQDRLM-LRGMGSVMPRAANDSPQGRSLNRRVEIMLTQR 343 >gi|319641785|ref|ZP_07996465.1| hypothetical protein HMPREF9011_02063 [Bacteroides sp. 3_1_40A] gi|317386574|gb|EFV67473.1| hypothetical protein HMPREF9011_02063 [Bacteroides sp. 3_1_40A] Length = 396 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++K K +Q + K I + + I+K ++ ++ + + D N F+ + Sbjct: 238 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 291 Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P+ ++ +I ++ L +++ I G TDA + ++ N LS RA + L+K G Sbjct: 292 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 348 Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328 V +++ K G + + N Sbjct: 349 V-PNKMLKAKGVGAKISYASQNAPN 372 >gi|294775157|ref|ZP_06740683.1| OmpA family protein [Bacteroides vulgatus PC510] gi|294450969|gb|EFG19443.1| OmpA family protein [Bacteroides vulgatus PC510] Length = 396 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++K K +Q + K I + + I+K ++ ++ + + D N F+ + Sbjct: 238 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 291 Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P+ ++ +I ++ L +++ I G TDA + ++ N LS RA + L+K G Sbjct: 292 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 348 Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328 V +++ K G + + N Sbjct: 349 V-PNKMLKAKGVGAKISYASQNAPN 372 >gi|254883115|ref|ZP_05255825.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254835908|gb|EET16217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 410 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++K K +Q + K I + + I+K ++ ++ + + D N F+ + Sbjct: 252 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 305 Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P+ ++ +I ++ L +++ I G TDA + ++ N LS RA + L+K G Sbjct: 306 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 362 Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328 V +++ K G + + N Sbjct: 363 V-PNKMLKAKGVGAKISYASQNAPN 386 >gi|269128089|ref|YP_003301459.1| OmpA/MotB domain-containing protein [Thermomonospora curvata DSM 43183] gi|268313047|gb|ACY99421.1| OmpA/MotB domain protein [Thermomonospora curvata DSM 43183] Length = 365 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 9/111 (8%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSL 289 + +F S+ L + L T + + GHTD DN LS Sbjct: 87 QADVLFKTGSADLSAAAEKYLADVVAKLKEANVTGEVQVVGHTDDV---GEPEDNLALSK 143 Query: 290 DRAYSAYQVLMKSGVSEDRISKI-SGFAHHRLKIA--SDPMNSANRRIDIL 337 RA + Q + ++ I+ I G + S NRR+ IL Sbjct: 144 RRAEAVVQAMQPQ-LANTGITLIPEGKGESEPREKGTSPQARQRNRRVSIL 193 >gi|150004726|ref|YP_001299470.1| hypothetical protein BVU_2187 [Bacteroides vulgatus ATCC 8482] gi|149933150|gb|ABR39848.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 423 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 11/145 (7%) Query: 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIP 244 ++K K +Q + K I + + I+K ++ ++ + + D N F+ + Sbjct: 265 SLKVKPEIQYVEKIIEKVIEKPI---IMKQIVETPSQPNV---LCDLFNNIYFEFDKTEI 318 Query: 245 LPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 P+ ++ +I ++ L +++ I G TDA + ++ N LS RA + L+K G Sbjct: 319 TPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNMDLSQKRADAVVNALIKKG 375 Query: 304 VSEDRISKISGFAHHRLKIASDPMN 328 V +++ K G + + N Sbjct: 376 V-PNKMLKAKGVGAKISYASQNAPN 399 >gi|255262798|ref|ZP_05342140.1| OmpA domain protein [Thalassiobium sp. R2A62] gi|255105133|gb|EET47807.1| OmpA domain protein [Thalassiobium sp. R2A62] Length = 176 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F +S L +L +S + + GH D N L R Sbjct: 66 DRVLFTVDTSSLTAAGRSTLDGQATWLLTNSDYLAVVEGHADEQ---GTREYNLALGARR 122 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR-IDIL 337 A + + L+ GV +R+ +S + R + + + NRR + I+ Sbjct: 123 ANAVREYLISRGVPSNRLRTVS-YGKERPTEICSEEACYAKNRRAVTII 170 >gi|229526017|ref|ZP_04415421.1| protein F-related protein [Vibrio cholerae bv. albensis VL426] gi|229336175|gb|EEO01193.1| protein F-related protein [Vibrio cholerae bv. albensis VL426] Length = 204 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 99 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197 >gi|315609087|ref|ZP_07884056.1| OmpA family protein [Prevotella buccae ATCC 33574] gi|315249157|gb|EFU29177.1| OmpA family protein [Prevotella buccae ATCC 33574] Length = 755 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + ++ + PE+ L ++ ++L + V I + H D ++ N RLS R Sbjct: 587 DNIFYEFDKANLTPESTKALDELVKLLNENPNVTIELSAHCD---YKGSMEYNKRLSQRR 643 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + L+ G++ DR++ + G+ R K Sbjct: 644 AEAVVAYLVGHGIARDRLTPV-GYGKERPK 672 >gi|224531999|ref|ZP_03672631.1| outer membrane protein [Borrelia valaisiana VS116] gi|224511464|gb|EEF81870.1| outer membrane protein [Borrelia valaisiana VS116] Length = 389 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F S L + L I E+ Sbjct: 253 IETEVEHYLQEKQIKSINVEKNNKGINLS-FDIE----FYPDSFQILQKEYKKLDIIAEL 307 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L + I GHT+ LS RA + L+K V ++D+I G+ Sbjct: 308 LEKFKKNNLLIEGHTEHFGLEEEMH---ELSEKRARAIGNYLIKMRVKNKDQIL-FKGWG 363 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 364 SKKPKYPKSSPLKAKNRRVEITILN 388 >gi|218708964|ref|YP_002416585.1| sodium type flagellar protein MotY precursor [Vibrio splendidus LGP32] gi|218321983|emb|CAV17990.1| Sodium type flagellar protein MotY precursor [Vibrio splendidus LGP32] Length = 293 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S + L +I + + +++ + +TD+ + I+++ LS RA S Sbjct: 187 YDRNSDQLNKSSRKRLSQIADYVRYNQDIDLVLVATYTDSVDSKGISQN---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ EDRI ++ G+ R ++ NRR+ I + Q Sbjct: 244 LREYFKSLGLPEDRI-QVQGYGKRRPIADNNSPIGKDKNRRVVISLGRTQ 292 >gi|187250865|ref|YP_001875347.1| outer membrane protein [Elusimicrobium minutum Pei191] gi|186971025|gb|ACC98010.1| Outer membrane protein [Elusimicrobium minutum Pei191] Length = 993 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S + ++++ L I + G+TD N +SL RA +A ++L Sbjct: 896 SCELTEKQKNIIREKCAALKDFPYTKIIVTGNTDNI---GSYGVNKSISLRRANAAAKIL 952 Query: 300 MKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 ++ G++ D I I G A+ + + NRR DIL+ Sbjct: 953 IEEGLNPDTIE-IMGVAYDNPVTGNLTREGRAMNRRTDILIL 993 >gi|148262600|ref|YP_001229306.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146396100|gb|ABQ24733.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 199 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 7/112 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 FD S P L +++ + I I GH D N L R Sbjct: 92 EKIFFDFDSYALTPIARDTLTNNAKIMGKRAGVKIQIEGHCDEL---GSDEYNLALGEKR 148 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 A SA Q L+ GV R+ + + + + NRR + ++ + Sbjct: 149 AKSAMQYLVTMGVPAQRL-AVISYGKEKPADPGHGEAAWAKNRRNEFVIISK 199 >gi|332188277|ref|ZP_08390004.1| ompA family protein [Sphingomonas sp. S17] gi|332011673|gb|EGI53751.1| ompA family protein [Sphingomonas sp. S17] Length = 175 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + + E L ++ A + +RGH+D+ N R+S RA +A Sbjct: 66 FPEGGAELDREAKAALDRLAADPAVRQGHLILRGHSDSD---GDDAGNRRMSRQRAEAAR 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD--------PMNSANRRIDILVED 340 L G++ R+ K+ R + + NRR++I ++ Sbjct: 123 DYLAGKGIASARM-KVIALGETRPIAPNAKPDGTDDSAGRARNRRVEIELDR 173 >gi|259908602|ref|YP_002648958.1| OmpA family protein [Erwinia pyrifoliae Ep1/96] gi|224964224|emb|CAX55731.1| OmpA family protein [Erwinia pyrifoliae Ep1/96] gi|283478573|emb|CAY74489.1| putative type VI secretion system, core protein [Erwinia pyrifoliae DSM 12163] Length = 407 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 65/177 (36%), Gaps = 11/177 (6%) Query: 167 INKEENYFLPPLSKEKILAMKRKK--RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + + L + + + + K + ++ + LS L+A + + + + Sbjct: 221 LGRAAEPLLRQIWQTPLPQLPGSKYGAVSQISFDLRQRLSDLIASHQLN--ITDGDDGNK 278 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-D 283 +I ID +F + PE ++ ++ + + I +TD + Sbjct: 279 VILPIDS----LFSPPGAELTPEGRALIARVASAMESLKGTLLIAVYTDNRLLPSTQFMS 334 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 N S +A + ++++ + G + + ++ ++ NRR++I + Sbjct: 335 NDEYSAAQAQAIGTMMLQLIAQPCINVRAEGRGDSQGLLPNNSASNRTQNRRVEITL 391 >gi|184159157|ref|YP_001847496.1| outer membrane protein [Acinetobacter baumannii ACICU] gi|213158280|ref|YP_002320331.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB0057] gi|215482606|ref|YP_002324798.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB307-0294] gi|239501025|ref|ZP_04660335.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii AB900] gi|301346652|ref|ZP_07227393.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB056] gi|301513292|ref|ZP_07238529.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB058] gi|301596453|ref|ZP_07241461.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB059] gi|183210751|gb|ACC58149.1| Outer membrane protein [Acinetobacter baumannii ACICU] gi|193078077|gb|ABO13012.2| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii ATCC 17978] gi|213057440|gb|ACJ42342.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB0057] gi|213988269|gb|ACJ58568.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii AB307-0294] Length = 187 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 79 FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ SGV+ ++ +S + ++ NRR++I Sbjct: 136 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 177 >gi|91975488|ref|YP_568147.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91681944|gb|ABE38246.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 212 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 74/193 (38%), Gaps = 18/193 (9%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 D + +++ ++ + ++ + L + + +LS + I Sbjct: 29 AADDATEDQILRALAPKKPLTRSLSASRPAADPAERQFVDTLRNRTTRSLSSGEREQIA- 87 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRG 270 + I + I FD +S+ + + +G+ L++ + G Sbjct: 88 --TLAKDKPNIDLEIT-------FDYNSANISRKAEPAVDALGKALSNPDLKGSTFVVAG 138 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS 329 HTD+ N LS RA + +VL++ G++ + + G+ ++ K A P + Sbjct: 139 HTDSI---GGDAYNQELSERRADTIKRVLVEKYGIAGSDLVTV-GYGENKPKDAVRPADP 194 Query: 330 ANRRIDILVEDRQ 342 +NRR+ ++ Q Sbjct: 195 SNRRVQVVNMTSQ 207 >gi|148253708|ref|YP_001238293.1| hypothetical protein BBta_2207 [Bradyrhizobium sp. BTAi1] gi|146405881|gb|ABQ34387.1| putative outer membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 216 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 17/183 (9%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 K + P + +I A + K+ + + L + T+ I Sbjct: 42 KPKPATRGLSVGPQAAPQIDATAQAKQSTFIDSMRNRKTRSLSLGEREQLAEIAATKPKI 101 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNI 280 + I FD +S+ +I +Q++G+ L+ + GHTD Sbjct: 102 DLEIQ-------FDYNSAAISKTSIQAVQELGKALSD-PNLKGSTFMVAGHTDGI---GS 150 Query: 281 ARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 N LS RA + + L++ G++ + + G+ +LK A++P + NRR+ ++ Sbjct: 151 DGFNQDLSERRADTLKRYLVEKFGLAGQDLVTV-GYGKTKLKDAANPADPVNRRVQVVNM 209 Query: 340 DRQ 342 D + Sbjct: 210 DTK 212 >gi|163854239|ref|YP_001642282.1| peptidoglycan-associated lipoprotein [Methylobacterium extorquens PA1] gi|218533185|ref|YP_002424001.1| peptidoglycan-associated lipoprotein [Methylobacterium chloromethanicum CM4] gi|240141700|ref|YP_002966180.1| Outer membrane lipoprotein omp16 precursor [Methylobacterium extorquens AM1] gi|163665844|gb|ABY33211.1| peptidoglycan-associated lipoprotein [Methylobacterium extorquens PA1] gi|218525488|gb|ACK86073.1| peptidoglycan-associated lipoprotein [Methylobacterium chloromethanicum CM4] gi|240011677|gb|ACS42903.1| Outer membrane lipoprotein omp16 precursor [Methylobacterium extorquens AM1] Length = 170 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 +++ + F+ S+ P L K L I GH D R Sbjct: 55 VVNIGDRVFFESDSTDLTPTATATLDKQASWLQRYPRYSFLIEGHADERGTREYNYS--- 111 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337 L RA + L G+S R+ +S + R + ++ S NRR + +L Sbjct: 112 LGARRAQTVQDYLASRGISASRMRTVS-YGKERPVAVCNDISCWSQNRRSVSVL 164 >gi|78224682|ref|YP_386429.1| OmpA/MotB [Geobacter metallireducens GS-15] gi|78195937|gb|ABB33704.1| OmpA/MotB [Geobacter metallireducens GS-15] Length = 194 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 + F+ SS+ E L K E+L ++ + I G+ D R N Sbjct: 82 QLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFKVRIEGNCDE---RGSDEYNLA 138 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVEDR 341 L RA +A + L+ GV DR+S IS + + + + NRR + +V + Sbjct: 139 LGERRAQAAMKYLLTMGVPADRLSIIS-YGEEKPADPGHDEAAWAKNRRDEFVVMVK 194 >gi|114561780|ref|YP_749293.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333073|gb|ABI70455.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 479 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 10/142 (7%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQR----NTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 ++ + + G+ I + +F S LPE +++ + + L Sbjct: 338 IIEETTLNNNRVGIDLQGLTDEIAKTGHVALDGLLFKYDSDELLPEAYPIVEVVAQYLQT 397 Query: 262 STEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + + GH+D N LS RA + L+K + + G + Sbjct: 398 HPKQLFYVVGHSDDQ---GSQAYNQTLSEKRATAIKTRLIKQFSISAQQVEAKGVGEYSP 454 Query: 321 KIAS--DPMNSANRRIDILVED 340 + + NRR+++++ Sbjct: 455 IANNLDEAGQKQNRRVELVIRS 476 >gi|238786643|ref|ZP_04630444.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia frederiksenii ATCC 33641] gi|238725011|gb|EEQ16650.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia frederiksenii ATCC 33641] Length = 168 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD +Q IG+ L + + + GHTDA+ N +LS +R Sbjct: 61 NKVLFDSDVRKLNSSGTQTVQNIGQALHNVGINHLRVDGHTDAT---GEDSYNQKLSYER 117 Query: 292 AYSAYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 A + L G+ I + G S + NRR+ ++V Sbjct: 118 AAAVADSLATIGIPRTNIDVRGRGKLEPVADNRSAKGRAENRRVAMIV 165 >gi|221209346|ref|ZP_03582327.1| OmpA family protein [Burkholderia multivorans CGD1] gi|221170034|gb|EEE02500.1| OmpA family protein [Burkholderia multivorans CGD1] Length = 277 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 15/113 (13%) Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F KSS LP L I ++ A T I + GHTD N LS RA Sbjct: 165 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIEVVGHTDRI---GSDESNRALSRARAE 221 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338 + + L+ G+ RI + G + P S +RR+ I V Sbjct: 222 TVKRYLVAHGLDAARI-RTEGAGSSQPVSHCPPGESPAVIACLQKDRRVTITV 273 >gi|156977399|ref|YP_001448305.1| hypothetical protein VIBHAR_06186 [Vibrio harveyi ATCC BAA-1116] gi|156528993|gb|ABU74078.1| hypothetical protein VIBHAR_06186 [Vibrio harveyi ATCC BAA-1116] Length = 216 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S P L ++ L+ I++ GHTD+ + N L L RA + Sbjct: 107 FGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDS---KGSEGYNQELGLQRALTTS 163 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +VL GV RI + + ++ + NRR ++ V Sbjct: 164 KVLSTDGVERTRIV-VRSLGETQPIASNSTVEGRAQNRRSEVWV 206 >gi|120600520|ref|YP_965094.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|146294678|ref|YP_001185102.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|120560613|gb|ABM26540.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] gi|145566368|gb|ABP77303.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 202 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ PE ++ I L ++I GHT + N LS +RA + Sbjct: 79 LFPNDSAFIAPEYYSQIEDIAAFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 L + R++ I G+ R + + NRR+ Sbjct: 136 VTAALADRFNIDRSRLTAI-GYGSSRPIVLEQTPEAEMRNRRV 177 >gi|311697262|gb|ADQ00134.1| outer membrane protein OprF [marine bacterium HP15] Length = 374 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E + +I +L ++ VI I GH DA + N RLS RA S Sbjct: 269 FPLDSASIPAEFDSEIDRIAALILENTGTVIEIAGHADA---SGDSVYNQRLSQRRAESV 325 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L+ ++ DRI + G+ + ++ NRR++ Sbjct: 326 ASALISRNATIADRIKAV-GYGETQPIATNETAQGREMNRRVE 367 >gi|260551454|ref|ZP_05825638.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. RUH2624] gi|260405448|gb|EEW98941.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. RUH2624] Length = 191 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 83 FDYDSSDLSAEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ SGV+ ++ +S + ++ NRR++I Sbjct: 140 QSYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 181 >gi|118591825|ref|ZP_01549220.1| possible OmpA family member [Stappia aggregata IAM 12614] gi|118435468|gb|EAV42114.1| possible OmpA family member [Stappia aggregata IAM 12614] Length = 628 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 11/178 (6%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 ++ ++E + +++ + + D+ + ++ V + E+ R Sbjct: 445 RNYDRELPPLQVGIPRDRYIVPAGRANYDDIYQTFTAPPVEQVEQAYSLRDIRESERLRD 504 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRN 279 + +D +T FD S++ + L+ I T V+ I GHTDA Sbjct: 505 KVRRVDL-DTITFDTGSAVVRQSQVPQLEDIARASQAVIEQDPTTVLLIEGHTDAV---G 560 Query: 280 IARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 N LS RA + ++L GV+ + + + G+ LK+ + NRR+ I Sbjct: 561 SDVSNLALSDRRAETVARILADVYGVAPENMV-VQGYGEDYLKVDTQGAEERNRRVTI 617 >gi|89889916|ref|ZP_01201427.1| hypothetical protein BBFL7_01736 [Flavobacteria bacterium BBFL7] gi|89518189|gb|EAS20845.1| hypothetical protein BBFL7_01736 [Flavobacteria bacterium BBFL7] Length = 318 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 230 DQRNTPM---FDKSSSI--PLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARD 283 D R P+ F +S E + K+ L + I GHTD + Sbjct: 205 DIRANPLILHFATGASTINLSNEQREKISKMVHYLDARPQASLISVGHTDNT---GSRST 261 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 N +S +RA A L+++G+S RI SG +D NRR+ + ++ Sbjct: 262 NTTISANRAEFAKSYLVENGISSSRIES-SGKGPDEPIATNDTEEGKEQNRRVVVTLK 318 >gi|120554618|ref|YP_958969.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120324467|gb|ABM18782.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 189 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD +S P+ VL LA + + + GH D R N L RA + Sbjct: 88 FDFDTSEIKPDARDVLVAHARYLADNPRQQVRLEGHADE---RGTKEYNLALGERRANAV 144 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + L+ +G S +I +S + + + + + NRR++++ Sbjct: 145 QRFLIVNGASRGQIETVS-YGEEKPAVRGSTESAWAQNRRVELV 187 >gi|326388398|ref|ZP_08209994.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] gi|326207130|gb|EGD57951.1| OmpA/MotB [Novosphingobium nitrogenifigens DSM 19370] Length = 172 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ E+ +LQ + LA I+I GH D R N L RA +A Sbjct: 70 FELDKYNVDTESQGILQSQAQWLAKYPGKKITIEGHCDE---RGTREYNLALGERRANAA 126 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339 L+ GV RI+ +S + + SD + + NRR + I VE Sbjct: 127 KTYLVGLGVDASRINTVSYGKERPIALGSDEASWAKNRRAVTITVE 172 >gi|308186299|ref|YP_003930430.1| Outer membrane protein A precursor [Pantoea vagans C9-1] gi|308056809|gb|ADO08981.1| Outer membrane protein A precursor [Pantoea vagans C9-1] Length = 356 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G TD + N +LS Sbjct: 228 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336 RA S L+ G+ ++IS G + D + N RR++I Sbjct: 285 EKRAQSVVDYLVSKGIPSNKISA-RGMGKSNPVTGNTCDSVKGRNALIDCLSPDRRVEI 342 >gi|49474668|ref|YP_032710.1| peptidoglycan-associated lipoprotein [Bartonella quintana str. Toulouse] gi|49240172|emb|CAF26636.1| Peptidoglycan-associated lipoprotein [Bartonella quintana str. Toulouse] Length = 172 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS P+ VL + + +L H + I I GH D R N L R Sbjct: 62 DRVFFSLDSSSIEPDAEAVLIRQAQWLLRHPSYSIVIEGHADE---RGTREYNLALGQRR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A + L+ GVS R+ IS + R D ++ + NRR Sbjct: 119 AVAVRNYLISLGVSSQRMQTIS-YGKERPVAVCDDISCWNQNRR 161 >gi|260428375|ref|ZP_05782354.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] gi|260422867|gb|EEX16118.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] Length = 817 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 13/105 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S+ E VL ++ ++A + + I GH D N LS+ RA Sbjct: 236 FAIDSARLKDEHRAVLAELRRLIAVAEPGALRVVIVGHADE---SGPELHNSGLSVRRAR 292 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 + L ++ V+ I+GF +D S NRR++I Sbjct: 293 AVRTALGRASVAG-----IAGFGEAAPLDPADSVEARSRNRRVEI 332 >gi|213971390|ref|ZP_03399504.1| OmpA family protein [Pseudomonas syringae pv. tomato T1] gi|213923833|gb|EEB57414.1| OmpA family protein [Pseudomonas syringae pv. tomato T1] Length = 417 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 15/274 (5%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 ++ A+ G + + SS D + K +T ++ Sbjct: 60 QSDSAATGGHWWQFGSGSESSDAGTDAKAPAPAPAPAPVAKAAATPAAAAGAESSGPWYW 119 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE---KILAMKRKK 190 S + K K + + + + + ++ K L M K Sbjct: 120 PFGSNDNAQAKPDAVASKPADKPAAPAMVAKSETDTKWWWPFGAEGQKDEPKALPMPDPK 179 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 Q + L + D+ F+ R L++I ++ ++ LP T+ Sbjct: 180 VTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTLG 234 Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + ++ +V+ + I GH D N ++S +RA S + SG+ +R+ Sbjct: 235 PITRLAKVVEGDQKTAVLILGHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRL 291 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 S+ G + A+D + NRR++IL+ + Sbjct: 292 SQ-RGMGAVMPRAANDSLEGRALNRRVEILMTPQ 324 >gi|218676336|ref|YP_002395155.1| putative protein F-related protein [Vibrio splendidus LGP32] gi|218324604|emb|CAV26143.1| putative protein F-related protein [Vibrio splendidus LGP32] Length = 203 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ P P L +G L+ + + I GHTD + R N LS RA Sbjct: 99 FKTGSTSPEPAYNNWLDTLGSYLSRRQDIDVVIEGHTDNT---GSDRVNDPLSEQRAKEV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILV 338 L + VS I GF + AS + NRR+++++ Sbjct: 156 KARLESNYVSSRAIY-TRGFGEYVPACNNASVQGKACNRRVELML 199 >gi|163786724|ref|ZP_02181172.1| hypothetical protein FBALC1_16102 [Flavobacteriales bacterium ALC-1] gi|159878584|gb|EDP72640.1| hypothetical protein FBALC1_16102 [Flavobacteriales bacterium ALC-1] Length = 308 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 9/125 (7%) Query: 220 TRTGILISIIDQRNTPM---FDKSSSI--PLPETIVVLQKIGEVLAHSTEVISIRGHTDA 274 T + + R P+ F+ + E + I + + + GHTD Sbjct: 186 TDEALEAACEAIRKNPLVLHFNTGQAQINLTAEQRQKIADISRCVDKLGVKVQVVGHTDN 245 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 + A N L DRA A L+++G+ D + S G A+D + NRR Sbjct: 246 T---GDADTNMTLGQDRADFAKGYLVRNGILSDNVEATSKGQTEPIADNATDEGKAKNRR 302 Query: 334 IDILV 338 I + Sbjct: 303 TVITI 307 Score = 43.3 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 10/89 (11%) Query: 226 ISIIDQRNTPMFDKSS-SIPLPETIVVLQKIGEV----LAHSTEVISIRGHTDASPFRNI 280 I I D N F S+ SI P + V ++ ++ LA+ + I I G+ + N Sbjct: 69 IKINDNFN---FKTSNFSILEPISTGVTSEVAKLKDYLLANPLKDIDITGYYRSDETNNS 125 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 A N L L RA + L+ GV +I Sbjct: 126 AYPN--LGLARANAVKNYLISQGVPSRQI 152 >gi|114570660|ref|YP_757340.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114341122|gb|ABI66402.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 304 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S + LP++ L + ++L + + GHTD N LS R Sbjct: 198 DGLLFAHDSDVLLPDSATALTALRDLLTERPSLTLYVVGHTD---MSGSLTYNMSLSERR 254 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 A S L++ G+ DR++ +G + ++ D + NRR++I+ Sbjct: 255 AASVVTALVEDYGIRMDRLTA-AGVGPLAPEASNGTDDGRTLNRRVEIV 302 >gi|310767498|gb|ADP12448.1| OmpA family protein [Erwinia sp. Ejp617] Length = 407 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 65/177 (36%), Gaps = 11/177 (6%) Query: 167 INKEENYFLPPLSKEKILAMKRKK--RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + + L + + + + K + ++ + LS L+A + + + + Sbjct: 221 LGRAAEPLLRQIWQTPLPQLPGSKHGAVSQISFDLRQRLSDLIASHQLN--ITDGDDGNK 278 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR-D 283 +I ID +F + PE ++ ++ + + I +TD + Sbjct: 279 VILPIDS----LFSPPGAELTPEGRALIARVASAMESLKGTLLIAVYTDNRLLPSTQFMS 334 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 N S +A + ++++ + G + + ++ ++ NRR++I + Sbjct: 335 NDEYSAAQAQAIGTMMLQLIAQPCINVRAEGRGDSQGLLPNNSASNRTQNRRVEITL 391 >gi|56697940|ref|YP_168311.1| peptidoglycan-associated lipoprotein [Ruegeria pomeroyi DSS-3] gi|56679677|gb|AAV96343.1| peptidoglycan-associated lipoprotein [Ruegeria pomeroyi DSS-3] Length = 181 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE L + +L ++ +I GH D N L R Sbjct: 71 DRVLFAVDQSTLGPEAQATLGAQAQWLLTNTDYTATIEGHADEQ---GTREYNLALGARR 127 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333 A +A + L+ GV+ R+ +S ++I SD S NRR Sbjct: 128 ANAAREFLISRGVAGSRLKTVSYGKERPIEICSDEACYSKNRR 170 >gi|27904776|ref|NP_777902.1| peptidoglycan-associated lipoprotein precursor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396115|sp|Q89AJ5|PAL_BUCBP RecName: Full=Peptidoglycan-associated lipoprotein; Flags: Precursor gi|27904174|gb|AAO27007.1| peptidoglycan-associated lipoprotein precursor [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 173 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 18/148 (12%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + K L+ DN F+ T + + NT F ++ + L Sbjct: 39 EQETNKSKQQLTNFSEDN------FDETLEKLK-----KGNTIYFPFNNHQVNSKYAKNL 87 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + L H + I I GHTD+ R + N L RA S L GVS +I+ Sbjct: 88 NDLAQFLCHHSNQKIMIEGHTDS---RGTNKYNMYLGQKRADSVKLYLESKGVSNQQITT 144 Query: 312 ISGFAHHRLKIASDPMN--SANRRIDIL 337 +S + + + N S NRR I+ Sbjct: 145 VS-YGSSKPVAHGNKENSYSKNRRSVII 171 >gi|255536190|ref|YP_003096561.1| OmpA [Flavobacteriaceae bacterium 3519-10] gi|255342386|gb|ACU08499.1| OmpA [Flavobacteriaceae bacterium 3519-10] Length = 474 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 + +F+ + PE+ L +++ S I GHTD + N +LS RA Sbjct: 356 DNILFNFDKATIRPESKEKLDAAAQIIKDSQGKFLIIGHTDK---KGAESYNLKLSQRRA 412 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 + L GV++ + + G + N+ Sbjct: 413 GAVVDALEARGVADSSLKSM-GVGEQDATVPETASNAE 449 >gi|254476621|ref|ZP_05090007.1| OmpA family protein [Ruegeria sp. R11] gi|214030864|gb|EEB71699.1| OmpA family protein [Ruegeria sp. R11] Length = 176 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 6/111 (5%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNW 285 D+ + F S P+ + + VL + + + GH+DAS R+ N Sbjct: 63 QDRESHIFFLSGGSRLSPQMERQVVLLAGVLNTAPMKDACLRLTGHSDASGGRDA---NR 119 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 RLS RA L + DR+ ++ G NRR+ I Sbjct: 120 RLSEQRAEVVAAALRRRLDRGDRVEEVRGVGEETPLEGWPSTARENRRVSI 170 >gi|153833252|ref|ZP_01985919.1| outer membrane protein [Vibrio harveyi HY01] gi|148870523|gb|EDL69438.1| outer membrane protein [Vibrio harveyi HY01] Length = 216 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S P L ++ L+ I++ GHTD+ + N L L RA + Sbjct: 107 FGFDQSSLTPMGNKALTQLASSLSEGDSPITVEGHTDS---KGSEGYNQELGLQRALTTS 163 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +VL GV RI + + ++ + NRR ++ V Sbjct: 164 KVLSTDGVERTRIV-VRSLGETQPIASNSTVEGRAQNRRSEVWV 206 >gi|50085693|ref|YP_047203.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp. ADP1] gi|49531669|emb|CAG69381.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp. ADP1] Length = 193 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 85 FDYDSSDLSTEDYQTLQAHAQFLIANANSRVALTGHTDE---RGTREYNMALGERRAKAV 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + + NRR++I Sbjct: 142 QSYLITNGVNPQQLEAVS-YGKEMPINPGHNEAAWKENRRVEI 183 >gi|305667116|ref|YP_003863403.1| hypothetical protein FB2170_12741 [Maribacter sp. HTCC2170] gi|88708050|gb|EAR00288.1| hypothetical protein FB2170_12741 [Maribacter sp. HTCC2170] Length = 366 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 20/270 (7%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ--S 140 I P + + + D G+ + + + + + Q Sbjct: 104 ISAASFRPSSETVEIKPAYAQWELGAPAPDCASGNPDDCRYWCYKGYPAEFTTLDTQVLG 163 Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 + T K K LE + EE K + K +++ ++ Sbjct: 164 ADASVAKTPIGSKNASYTKRVLLEPTRVIEEVIPAQYDEITKTVLDKDAYTVEETVPAVT 223 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQ-KIGEV 258 T++ V + S+++ + P+ ++ S+ ++ ++ V Sbjct: 224 KTVTKEVLKEKGGLTTWNEVE----CSLVEYQALPINWNLGSATLTSSAKNIIDTRLMPV 279 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L + + I HTD R + N LS RA + L+ GV+ + +G+ Sbjct: 280 LQQNPGVKLEIASHTD---VRGNSGSNQDLSERRAKAVADYLITKGVNSS-LLVANGYGE 335 Query: 318 HRLKIA-------SDPMNSANRRIDILVED 340 +++K ++ ++ NRR + + + Sbjct: 336 NKVKNRCKEGVSCTEREHAVNRRTEFRLIN 365 >gi|84393403|ref|ZP_00992162.1| sodium-type flagellar protein MotY precursor [Vibrio splendidus 12B01] gi|84376012|gb|EAP92901.1| sodium-type flagellar protein MotY precursor [Vibrio splendidus 12B01] Length = 293 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S + L +I + + +++ + +TD+ + I+++ LS RA S Sbjct: 187 YDRNSDQLNKSSRKRLSQIADYVRYNQDIDLVLVATYTDSVDSKGISQN---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ EDRI ++ G+ R ++ NRR+ I + Q Sbjct: 244 LREYFKSLGLPEDRI-QVQGYGKRRPIADNNSPIGKDKNRRVVISLGRTQ 292 >gi|291570403|dbj|BAI92675.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 204 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%) Query: 195 LAKKISSTLSGLVADNIVKGV-LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 ++ ++ + + + ++ + + I + N F+ S+ P+ + ++ Sbjct: 51 ISGQVRQMRDAQIIPAAFENIPGIKSVFSTLKIDPVRIENRIYFNSGSAQLNPQDLQIIT 110 Query: 254 KIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 KI E L + I GHTD R A N +L+L+RA + L K G+ R+ + Sbjct: 111 KIQEFLDRYPQLSLRIIGHTD---LRGNAARNQQLALNRAIAVRDALTKQGIDPKRLEVV 167 Query: 313 SGFAHHRLK 321 + + Sbjct: 168 ---GNSQPP 173 >gi|320352308|ref|YP_004193647.1| OmpA/MotB domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320120810|gb|ADW16356.1| OmpA/MotB domain protein [Desulfobulbus propionicus DSM 2032] Length = 189 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 11/105 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRA 292 +F S+ P P L I + I+ + GHT + N RLS RA Sbjct: 75 LFPLGSTEPEPGQTDQL--ISGLRHCQVNPITPLVVTGHTCSL---GTEATNLRLSRLRA 129 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 +L G + ++ +SG + NRR+ ++ Sbjct: 130 EQVATLLRDRGYT---VATVSGKGATDPVSTNPTKRHLNRRVTLV 171 >gi|311280141|ref|YP_003942372.1| OmpA/MotB domain-containing protein [Enterobacter cloacae SCF1] gi|308749336|gb|ADO49088.1| OmpA/MotB domain protein [Enterobacter cloacae SCF1] Length = 362 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N +LS Sbjct: 234 KSDVLFNFNKATLKPEGKQALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSEAY-NQKLS 290 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 RA S L+ G+ ++IS G S N + +RR++I Sbjct: 291 TQRAQSVVDYLVSKGIPANKISA-RGMGKSDPVTGSTCNNVKARAALIDCLAPDRRVEIE 349 Query: 338 VE 339 V+ Sbjct: 350 VK 351 >gi|253996272|ref|YP_003048336.1| OmpA/MotB domain-containing protein [Methylotenera mobilis JLW8] gi|253982951|gb|ACT47809.1| OmpA/MotB domain protein [Methylotenera mobilis JLW8] Length = 365 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + + GHTD N +LS RA L+ G+ DR+ + G ++ D Sbjct: 279 VKVTGHTDKL---GSEAYNQKLSEKRANQVRDYLIAQGIEADRLVAV-GKGELVPVVSCD 334 Query: 326 PMNSA---------NRRIDI 336 + NRR++I Sbjct: 335 GVKGRKALIECLAPNRRVEI 354 >gi|294675945|ref|YP_003576560.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294474765|gb|ADE84153.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 739 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 19/115 (16%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS+ PE L + + +A + + GHTD+ N +LS RA + Sbjct: 498 FEPSSATIKPEDGPKLDALAKAMAQCQDFRMEVAGHTDSQ---GSDEGNRKLSQARAEAV 554 Query: 296 ------YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +VL ++ + G+ + +D A RRI+ ++ D + Sbjct: 555 ITALSARRVLTRNLTPK-------GYGESQPIAENDTDKGREATRRIEFVLLDAK 602 >gi|149909537|ref|ZP_01898191.1| outer membrane protein [Moritella sp. PE36] gi|149807442|gb|EDM67393.1| outer membrane protein [Moritella sp. PE36] Length = 211 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 13/159 (8%) Query: 181 EKILAMKRKKRLQDLAKKISST-LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + A + + L + ++I S +S A+ ++ ++ +G +I+ FD Sbjct: 62 QVEQAGEYQPTLDFINQQIVSAGVSETCAEFLLTNGFLQSMDSGQMIA------RVYFDF 115 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 ++ ++ VL I ++L + + + GH D + A N+ L L R+ S Q L Sbjct: 116 DNAHLTDKSKYVLDTIMQLLKLNNNNLVVEGHADTT---GTADYNFSLGLKRSRSVAQYL 172 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + GV + R+ + +D NRR++I Sbjct: 173 KQLGVEKGRLEA-TSVGDTMPISDNDTEAGRQLNRRVEI 210 >gi|312968985|ref|ZP_07783192.1| outer membrane protein A [Escherichia coli 2362-75] gi|312286387|gb|EFR14300.1| outer membrane protein A [Escherichia coli 2362-75] Length = 346 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|307627623|gb|ADN71927.1| outer membrane protein A [Escherichia coli UM146] Length = 365 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 237 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 293 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352 Query: 338 VE 339 V+ Sbjct: 353 VK 354 >gi|307552789|gb|ADN45564.1| outer membrane protein A [Escherichia coli ABU 83972] Length = 350 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|304397112|ref|ZP_07378991.1| OmpA domain protein transmembrane region-containing protein [Pantoea sp. aB] gi|304355261|gb|EFM19629.1| OmpA domain protein transmembrane region-containing protein [Pantoea sp. aB] Length = 356 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G TD + N +LS Sbjct: 228 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDI 336 RA S L+ G+ ++IS G + D + N RR++I Sbjct: 285 EKRAQSVVDYLVSKGIPSNKISA-RGMGKSNPVTGNTCDSVKGRNALIDCLSPDRRVEI 342 >gi|259415100|ref|ZP_05739022.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259349010|gb|EEW60764.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 638 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 I + + F+ S+ ++ V+ KI ++L E + I+GHTD+ N L Sbjct: 491 IQRADKIAFEPGSATVAADSARVIDKIAKLLQQCGEIPLEIQGHTDSQ---GREEMNLNL 547 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 S RA S L + G+ ++ + NRRI+ Sbjct: 548 SQARAQSVLNALRARRILTGSFVA-KGYGEDNPIASNSTEDGREANRRIE 596 >gi|218688793|ref|YP_002397005.1| outer membrane protein A [Escherichia coli ED1a] gi|218426357|emb|CAR07182.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli ED1a] Length = 346 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|215486075|ref|YP_002328506.1| outer membrane protein A [Escherichia coli O127:H6 str. E2348/69] gi|215264147|emb|CAS08491.1| outer membrane protein A (3a; II*; G; d) [Escherichia coli O127:H6 str. E2348/69] Length = 346 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|117623167|ref|YP_852080.1| outer membrane protein A [Escherichia coli APEC O1] gi|115512291|gb|ABJ00366.1| OmpA [Escherichia coli APEC O1] Length = 370 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 242 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 298 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 299 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 357 Query: 338 VE 339 V+ Sbjct: 358 VK 359 >gi|110641146|ref|YP_668876.1| outer membrane protein A [Escherichia coli 536] gi|331657022|ref|ZP_08357984.1| outer membrane protein A [Escherichia coli TA206] gi|110342738|gb|ABG68975.1| outer membrane protein A [Escherichia coli 536] gi|222032681|emb|CAP75420.1| Outer membrane protein A [Escherichia coli LF82] gi|331055270|gb|EGI27279.1| outer membrane protein A [Escherichia coli TA206] Length = 346 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|218557855|ref|YP_002390768.1| outer membrane protein A [Escherichia coli S88] gi|7188818|gb|AAF37887.1|AF234269_1 outer membrane protein A [Escherichia coli RS218] gi|218364624|emb|CAR02310.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli S88] gi|294493105|gb|ADE91861.1| outer membrane protein A [Escherichia coli IHE3034] gi|323953341|gb|EGB49207.1| OmpA transmembrane domain-containing protein [Escherichia coli H252] gi|323958256|gb|EGB53965.1| OmpA transmembrane domain-containing protein [Escherichia coli H263] Length = 346 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|209547147|ref|YP_002279065.1| OmpA/MotB domain-containing protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538391|gb|ACI58325.1| OmpA/MotB domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ PE+ + I + L H I GH+ ++ A+ N LS RA Sbjct: 83 FENNSTAIEPESYRTVGLIADALHHPDLFRYKFLIVGHSSST---GSAKHNLELSQKRAD 139 Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L VS DR+ + G P ++ NRR+ ++ Sbjct: 140 AINEALSTTFAVSPDRLFSV-GAGEEWPINPGHPESADNRRVQLI 183 >gi|163746609|ref|ZP_02153967.1| Outer membrane protein, OmpA/MotB family [Oceanibulbus indolifex HEL-45] gi|161380494|gb|EDQ04905.1| Outer membrane protein, OmpA/MotB family [Oceanibulbus indolifex HEL-45] Length = 639 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 25/275 (9%) Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + + N E+ D + + T LK + ++ ++ F +++ Sbjct: 359 GAVAVGSVLNNGEKIVSRSGDRVVVQDDTGEYRVLKDDNALIRRPGDEVQTQTFDDGSTR 418 Query: 139 QSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL------AMKRKKRL 192 + ++ + +D E + L +E+ + ++ ++ Sbjct: 419 TIVTKNDGSRIETIRSRDGTVLRRTNFDAQGREYILVDDLVEEREVIVNDLPQVQETQQA 478 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR--------NTPMFDKSSSIP 244 Q + + + L + + + + I + R + F S+ Sbjct: 479 QRASVQDEAALRQALQAELRSDQGRTFSLRQVR-EIREVRSLAPELELDAVRFPTGSAAI 537 Query: 245 LPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 PE L IG L VI + GHTDA A N LS RA + L Sbjct: 538 QPEQARALANIGSTLRDMIANDPRTVILVEGHTDAV---GDAGYNLALSDRRAETVALAL 594 Query: 300 MKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + V + G+ +L++ + ANRR Sbjct: 595 TEYFDVPPANLI-TQGYGESQLRVPTTTAEPANRR 628 >gi|254441790|ref|ZP_05055283.1| peptidoglycan-associated lipoprotein, putative [Octadecabacter antarcticus 307] gi|198251868|gb|EDY76183.1| peptidoglycan-associated lipoprotein, putative [Octadecabacter antarcticus 307] Length = 172 Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 + MF +S E L L+ +++ ++ I GH D N L R Sbjct: 62 DRVMFAVDTSTLTAEGRNTLDGQSGWLSTNSDYLAVIEGHADEQ---GTREYNLALGARR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR-IDIL 337 A + + L+ G++ RI +S + + S+ + NRR + I+ Sbjct: 119 ANAVREYLISKGLASSRIRTVSYGKERPIAVCSEESCYAQNRRALTII 166 >gi|254487179|ref|ZP_05100384.1| outer membrane protein, OmpA/MotB family [Roseobacter sp. GAI101] gi|214044048|gb|EEB84686.1| outer membrane protein, OmpA/MotB family [Roseobacter sp. GAI101] Length = 632 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 88/298 (29%), Gaps = 23/298 (7%) Query: 53 IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112 + ++ L + G + + N D + E + Sbjct: 329 ATAEAAPQEDDGLSKFEKALLLGLGAVAVGAVLKNG--SKVVSNSGDRLVVEDQNGDLRV 386 Query: 113 LKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN 172 LK ++ + F +++ + + + G+D + E Sbjct: 387 LKDDDALVRQAGDEVRRETFNDGSARTTVTKPDGSKVVTILGRDGTVLRRINIDPQGNEY 446 Query: 173 YFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR 232 E+ + + +++ +S + + + + L + D + Sbjct: 447 VLFDDTQVEQRIVVNELPQVEQTNTLLSQQNEEALRVALETQLRDTQAQRFSLRQVRDIQ 506 Query: 233 -----------NTPMFDKSSSIPLPETIVVLQKIG-----EVLAHSTEVISIRGHTDASP 276 + F+ S+ PE L KIG + VI I GHTDA Sbjct: 507 QVRALAPEVELDALRFETGSAAIQPEQARALAKIGTAITGAIRNDPRTVILIEGHTDA-- 564 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 N N LS RA + L + V + G+ LK+ S ANRR Sbjct: 565 VGNEGY-NLALSDRRAETVALALTEYFDVPPANLI-TQGYGETALKVPSQTAQPANRR 620 >gi|78189654|ref|YP_379992.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like [Chlorobium chlorochromatii CaD3] gi|78171853|gb|ABB28949.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like protein [Chlorobium chlorochromatii CaD3] Length = 211 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD S + + LQ + + ++I H D+ + N L R Sbjct: 106 GDILFDFDKSFIRKDAVPQLQDVAAWMKEHPTKNVTIEAHCDS---KGSEAYNIALGKRR 162 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 A +A L+ G+ +R+ IS + + + + + NRR+ +VE Sbjct: 163 ADAAKAYLVNKGIDSNRLKTIS-YGKDKPLMNGIDESARARNRRVHFVVE 211 >gi|300774087|ref|ZP_07083956.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760258|gb|EFK57085.1| OmpA/MotB family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 446 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ ++ LP + L + +L + + I G+TD + N +LSLDRA + Sbjct: 343 FETGTAKILPASRDQLLNLAAILKVFPDAKVKIGGYTDKT---GDESFNKKLSLDRANAV 399 Query: 296 YQVLMKSGVSEDRISKISGFAH---HRLKIASDPMNSANRRIDILV 338 L + G+ +++ G+ A + +RR+ + V Sbjct: 400 KVFLDEQGL-GAQVAGTEGYGSEIARYPADAPESDRIKDRRVSVSV 444 >gi|119775227|ref|YP_927967.1| OmpA/MotB [Shewanella amazonensis SB2B] gi|119767727|gb|ABM00298.1| OmpA/MotB [Shewanella amazonensis SB2B] Length = 289 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ + + L ++ E L+ +V I I +TD+ RN+ N ++S RA S Sbjct: 184 YESGGTELTRFSKAQLARVQEYLSLDPDVELILINAYTDSHGGRNL---NQKVSDKRADS 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + G+ DRI + G R ++ NRR+ I + Sbjct: 241 VKDFFVSKGIPADRI-QTEGHGETRHVASNQGADERQRNRRVVIQI 285 >gi|308270508|emb|CBX27120.1| hypothetical protein N47_A11490 [uncultured Desulfobacterium sp.] Length = 200 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISI 268 + + + + I + ++ K ++ P++ ++ I + + + I++ Sbjct: 72 KLEQKTIDTLFSEALSIQPKQPFHFILYFKKDTLLTPDSNKLIPDIIKSIQERNSTDITV 131 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPM 327 GHTD N LS RA S +L+ GV + I+ S G + +K + Sbjct: 132 VGHTDTL---GSKDYNMALSRKRADSVKDLLIDQGVEANNINTTSHGKENPLIKTEDNVS 188 Query: 328 NSANRRIDILV 338 NRR++++V Sbjct: 189 EPGNRRVEVIV 199 >gi|262199615|ref|YP_003270824.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262082962|gb|ACY18931.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 342 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARD 283 L+ ++ +F +S + V+ + ++L I I GH D + D Sbjct: 213 LVELVPAPRALLFRRSGDALRTRSEAVVDHLADLLERHPSVRIVIVGHVDPGELDDEDAD 272 Query: 284 NWR-LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRRIDILVED 340 LSL RA + + L++ GVS R+ A L +S + NRR+ + V Sbjct: 273 AEHTLSLRRAETVREALIRRGVSVRRLEVWDAAAEFPLSEGSSSHERARNRRVTVRVLR 331 >gi|169795057|ref|YP_001712850.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii AYE] gi|260556541|ref|ZP_05828759.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC 19606] gi|332851095|ref|ZP_08433204.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii 6013150] gi|332869632|ref|ZP_08438843.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii 6013113] gi|332875985|ref|ZP_08443771.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii 6014059] gi|169147984|emb|CAM85847.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii AYE] gi|260409800|gb|EEX03100.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii ATCC 19606] gi|322509070|gb|ADX04524.1| pal [Acinetobacter baumannii 1656-2] gi|323519051|gb|ADX93432.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii TCDC-AB0715] gi|332730259|gb|EGJ61584.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii 6013150] gi|332732679|gb|EGJ63911.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii 6013113] gi|332735851|gb|EGJ66892.1| peptidoglycan-associated lipoprotein [Acinetobacter baumannii 6014059] Length = 191 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 83 FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ SGV+ ++ +S + ++ NRR++I Sbjct: 140 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 181 >gi|114771339|ref|ZP_01448759.1| OmpA domain protein [alpha proteobacterium HTCC2255] gi|114548264|gb|EAU51151.1| OmpA domain protein [alpha proteobacterium HTCC2255] Length = 618 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ I + + V++ I +VL E I+GHTD+ N LS RA + Sbjct: 503 FEPGKVIINDDNLTVIKSIADVLRTCPEAKFEIQGHTDS---SGSEELNQNLSQSRAEAV 559 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L+ V IS G+ ++ NRRI+I + Sbjct: 560 LFELLNRRVLTSGISA-KGYGSISPIADNKTEEGREINRRIEIKLL 604 >gi|91210052|ref|YP_540038.1| outer membrane protein A [Escherichia coli UTI89] gi|237707059|ref|ZP_04537540.1| outer membrane protein A [Escherichia sp. 3_2_53FAA] gi|91071626|gb|ABE06507.1| outer membrane protein A precursor [Escherichia coli UTI89] gi|226898269|gb|EEH84528.1| outer membrane protein A [Escherichia sp. 3_2_53FAA] Length = 375 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 247 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 303 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 304 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 362 Query: 338 VE 339 V+ Sbjct: 363 VK 364 >gi|297184220|gb|ADI20338.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [uncultured alpha proteobacterium EB080_L27A02] Length = 618 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ I + + V++ I +VL E I+GHTD+ N LS RA + Sbjct: 503 FEPGKVIINDDNLTVIKSIADVLRTCPEAKFEIQGHTDS---SGSEELNQNLSQSRAEAV 559 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVE 339 L+ V IS G+ ++ NRRI+I + Sbjct: 560 LFELLNRRVLTSGISA-KGYGSISPIADNKTEEGREINRRIEIKLL 604 >gi|83943232|ref|ZP_00955692.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp. EE-36] gi|83846240|gb|EAP84117.1| Outer membrane protein, OmpA/MotB family protein [Sulfitobacter sp. EE-36] Length = 665 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 13/164 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-TGILISIIDQRNTP 235 P + + + ++ + L + + L G A + + + + I + + Sbjct: 496 PQVRPQANTLASQQNEEALRAALQTQLRGDQAQRYSLRQVRDVRQVRALAPEI--ELDAV 553 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLD 290 F S+ PE L KIG ++++ + VI + GHTDA N N LS Sbjct: 554 RFATGSAAIQPEQARALSKIGTAISNAIKDDPRTVILVEGHTDA--VGNAGY-NLALSDR 610 Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 RA + L + V + G+ LK+ ++ ANRR Sbjct: 611 RAETVALALTEYFDVPPANLI-TQGYGESALKVPTETAEPANRR 653 >gi|269105139|ref|ZP_06157833.1| lipoprotein precursor OmpA family [Photobacterium damselae subsp. damselae CIP 102761] gi|268160589|gb|EEZ39088.1| lipoprotein precursor OmpA family [Photobacterium damselae subsp. damselae CIP 102761] Length = 210 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + D+ L ++ FE + I D F+ +S +I Sbjct: 64 QQYDIVDVDKELLKNILGKMNSGEKCFEYLLSNASIERDDTTARVYFNFDNSKLTSASIY 123 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L K+ E + S I GHTD+ N L RA S + + +GV+ ++ Sbjct: 124 ILNKLIENVKASKSNYLIEGHTDSV---GTTSYNKDLGYRRAKSVIEFFVGNGVNRSQLQ 180 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDI 336 IS + +D S NRR++I Sbjct: 181 GIS-EGELKPLETNDTSIGRSYNRRVEI 207 >gi|126665979|ref|ZP_01736959.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] gi|126629301|gb|EAZ99918.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] Length = 305 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 10/115 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 Q + +F +S L K+ VLA ST + + GHTD R DN +L+ Sbjct: 182 QGSQILFSSASVALSDADRRSLDKVVVYVLADSTVTKVLVDGHTDR---RGSRIDNRKLA 238 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 DRA + L GV E RI+ + + + +P + NRR+ I +R+G Sbjct: 239 QDRADAVAGYLKSQGVEESRIT-VRAHGD-QFAASGNP--AQNRRVVIR-MEREG 288 >gi|324009900|gb|EGB79119.1| outer membrane protein A [Escherichia coli MS 57-2] Length = 354 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|198275312|ref|ZP_03207843.1| hypothetical protein BACPLE_01473 [Bacteroides plebeius DSM 17135] gi|198271895|gb|EDY96165.1| hypothetical protein BACPLE_01473 [Bacteroides plebeius DSM 17135] Length = 238 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Query: 266 ISIRGHTDASPFRNIARD-----NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 ++I G+TD + ++N + N LS +RA S L+ G S +I ++G Sbjct: 143 VAIYGYTDNTGWKNSTAEQSRQKNLDLSQERAQSVSSYLLACGASSSQIKSVTGMGEENP 202 Query: 321 KIASDPMNSA--NRRIDI 336 + NRR+++ Sbjct: 203 VADNSTAAGRQENRRVEV 220 >gi|149773177|dbj|BAF64763.1| outer membrane protein A [Shewanella livingstonensis] Length = 385 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 +F S+ + L+K+ + L +S++GH A N +LS Sbjct: 268 DLGGILFANDSAEIRAGSFADLEKLADHLTKYPQHTVSVQGHASNV---GKAEYNMKLSE 324 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 RA + L K G+S RIS + G+ + + +S N NRRI+ +V Sbjct: 325 RRAVAVASALNKKYGISISRISSV-GYGVTKPVMQGSSAEANRVNRRIEAIV 375 >gi|89075158|ref|ZP_01161594.1| putative outer membrane protein [Photobacterium sp. SKA34] gi|89049112|gb|EAR54678.1| putative outer membrane protein [Photobacterium sp. SKA34] Length = 196 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F SS + + + E L + I ++G+ ASP N A + LS RA Sbjct: 76 LFANDSSEIPESYMENISNMSEFLTKYPKTHIELKGY--ASPVGNTAYNV-ELSKRRAAV 132 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDRQG 343 Q L+ G+ RI I GF ASD N+ +RR+ V QG Sbjct: 133 IRQALITEGIVPSRIKTI-GFGDSDPVKASDVEESNALSRRVVAQVVGSQG 182 >gi|114564063|ref|YP_751577.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335356|gb|ABI72738.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 376 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 +F S+ + L+K+ + L +S++GH A N +LS Sbjct: 259 DLGGILFANDSAEIRAGSFADLEKLADHLTKYPQHTVSVQGHASNV---GKAEYNMKLSE 315 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 RA + L K G+S RIS + G+ + + +S N NRRI+ +V Sbjct: 316 RRAVAVASALNKKYGISISRISSV-GYGVTKPVMQGSSAEANRVNRRIEAIV 366 >gi|281178081|dbj|BAI54411.1| outer membrane protein OmpA [Escherichia coli SE15] gi|323190770|gb|EFZ76039.1| outer membrane protein A [Escherichia coli RN587/1] Length = 350 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|163869125|ref|YP_001610364.1| peptidoglycan-associated lipoprotein [Bartonella tribocorum CIP 105476] gi|161018811|emb|CAK02369.1| peptidoglycan-associated lipoprotein [Bartonella tribocorum CIP 105476] Length = 172 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS + +L + E L H I I GH D R N L R Sbjct: 62 DRVFFSLDSSSLDADAERILTRQAEWLLHYPYYSIMIEGHADE---RGTREYNLALGQRR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A + L+ GVS RI IS + R D ++ + NRR Sbjct: 119 AVAVRNYLVSLGVSAQRIQTIS-YGKERPVAVCDDISCWNQNRR 161 >gi|262393713|ref|YP_003285567.1| sodium-type flagellar protein MotY [Vibrio sp. Ex25] gi|1550618|dbj|BAA12313.1| component of sodium-driven polar flagellar motor [Vibrio alginolyticus] gi|262337307|gb|ACY51102.1| sodium-type flagellar protein MotY precursor [Vibrio sp. Ex25] Length = 293 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 187 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292 >gi|269965970|ref|ZP_06180062.1| sodium-type flagellar protein MotY [Vibrio alginolyticus 40B] gi|269829366|gb|EEZ83608.1| sodium-type flagellar protein MotY [Vibrio alginolyticus 40B] Length = 293 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 187 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292 >gi|168237123|ref|ZP_02662181.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734413|ref|YP_002114070.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709915|gb|ACF89136.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289811|gb|EDY29172.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616444|gb|EFY13353.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619695|gb|EFY16570.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622609|gb|EFY19454.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629758|gb|EFY26533.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632520|gb|EFY29266.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636985|gb|EFY33688.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641475|gb|EFY38113.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646058|gb|EFY42574.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649640|gb|EFY46071.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654059|gb|EFY50382.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658591|gb|EFY54853.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663448|gb|EFY59650.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670184|gb|EFY66324.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671420|gb|EFY67542.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676776|gb|EFY72843.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682700|gb|EFY78719.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686380|gb|EFY82362.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195127|gb|EFZ80309.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199809|gb|EFZ84898.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202802|gb|EFZ87838.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209073|gb|EFZ94010.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213664|gb|EFZ98452.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217967|gb|EGA02682.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221999|gb|EGA06386.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226572|gb|EGA10777.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229768|gb|EGA13891.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232993|gb|EGA17089.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240728|gb|EGA24770.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243044|gb|EGA27065.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249793|gb|EGA33695.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252735|gb|EGA36573.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259149|gb|EGA42793.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259972|gb|EGA43600.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268028|gb|EGA51507.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269876|gb|EGA53325.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 369 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 241 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356 Query: 338 VE 339 V+ Sbjct: 357 VK 358 >gi|312945470|gb|ADR26297.1| outer membrane protein A [Escherichia coli O83:H1 str. NRG 857C] Length = 365 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 237 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 293 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352 Query: 338 VE 339 V+ Sbjct: 353 VK 354 >gi|298208185|ref|YP_003716364.1| hypothetical protein CA2559_08086 [Croceibacter atlanticus HTCC2559] gi|83848106|gb|EAP85976.1| hypothetical protein CA2559_08086 [Croceibacter atlanticus HTCC2559] Length = 366 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 71/209 (33%), Gaps = 30/209 (14%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD----- 194 + S + +E+ K E + EE + K + +K ++ Sbjct: 165 ANDASTSSSPVAEQAGSYTKRVVTEPARVVEEEVPAEYATITKTVLVKDAGTTEETVAAK 224 Query: 195 ---LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 + K++ GL V L E T I+ ++ S+ Sbjct: 225 YKTVTKEVLKQKGGLTTWAEVDCKLLEYTDLNIVWNL-----------GSASLTNAAKAE 273 Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + + + I HTD+ R A N LS RA + L+ G++ +I+ Sbjct: 274 IDAKLLPVMQQGVSVEIASHTDS---RGTASSNQALSERRAQAVTNYLISKGINSSKITS 330 Query: 312 ISGFAHHRLKIA-------SDPMNSANRR 333 +G+ +L+ ++ ++ NRR Sbjct: 331 -NGYGESKLRNRCADGVSCTEREHTLNRR 358 >gi|315287600|gb|EFU47006.1| outer membrane protein A [Escherichia coli MS 110-3] Length = 354 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|311280760|ref|YP_003942991.1| SmpA/OmlA domain-containing protein [Enterobacter cloacae SCF1] gi|308749955|gb|ADO49707.1| SmpA/OmlA domain-containing protein [Enterobacter cloacae SCF1] Length = 265 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 15/117 (12%) Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLA--HSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +F S+ L+++ + H + I GH D N ++N LSL R Sbjct: 153 SLFGFGSATLSRTGETELRRMIAQIQEQHIPVKRVLITGHAD--RIGNSEKNN-ALSLAR 209 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS------ANRRIDILVED 340 A + +L+ G+ E + + G + + + + NRRI I + + Sbjct: 210 AEAVKTLLVAQGIPEA-LVETRGVGASQPLVVCPGETTPAVVACLEKNRRITINILE 265 >gi|306812596|ref|ZP_07446789.1| outer membrane protein A [Escherichia coli NC101] gi|305853359|gb|EFM53798.1| outer membrane protein A [Escherichia coli NC101] Length = 365 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 237 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 293 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352 Query: 338 VE 339 V+ Sbjct: 353 VK 354 >gi|229522237|ref|ZP_04411653.1| protein F-related protein [Vibrio cholerae TM 11079-80] gi|229340222|gb|EEO05228.1| protein F-related protein [Vibrio cholerae TM 11079-80] Length = 204 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 99 FEIGSAKVSMASKQWLDTVARFLAAESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V+++ I GF + + N NRR++I Sbjct: 156 KAALVQSRVAQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197 >gi|220905238|ref|YP_002480550.1| OmpA/MotB domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869537|gb|ACL49872.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 331 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S + + +L + ++ + + + G TD + N +LS +RA S Sbjct: 231 FAFNSYALDGKAMGILNEAAGLIKANPNKRVVLAGWTD---WIGSDAYNMKLSQERANSV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L+K G+ R++ I + + + NRR +I Sbjct: 288 KNYLVKQGIPASRMTAIGRGKSFKYNNETAEGRAMNRRTEI 328 >gi|298506340|gb|ADI85063.1| peptidoglycan-associated lipoprotein [Geobacter sulfurreducens KN400] Length = 187 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + +L E L + V I GHTD R N L RA SA Sbjct: 85 FDFDAWVLNGAAREILAGNAEWLRKNPGVAVILEGHTDE---RGSDAYNLALGEQRAKSA 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 + L G+ R++ +S + + + + + NRR++ + Sbjct: 142 MKYLQTLGIDAGRMTVVS-YGEEKPAVEGHDESAWAGNRRVEFI 184 >gi|254516702|ref|ZP_05128761.1| OmpA/MotB [gamma proteobacterium NOR5-3] gi|219675125|gb|EED31492.1| OmpA/MotB [gamma proteobacterium NOR5-3] Length = 177 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS P + +L + + + GHTD R N L RA + Sbjct: 79 FEFDSSTLTPAAQAAVDAHIALLKTNDRSVRLDGHTDE---RGTRDYNMALGERRANAVR 135 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 ++ +GV+ RI +S + + + + S NRR+++ Sbjct: 136 DYMVVNGVASYRIETVS-YGEEQPVAYGSGESSWSQNRRVEL 176 >gi|319954672|ref|YP_004165939.1| ompa/motb domain protein [Cellulophaga algicola DSM 14237] gi|319423332|gb|ADV50441.1| OmpA/MotB domain protein [Cellulophaga algicola DSM 14237] Length = 638 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + L+K+ VL I I HTDA R N +LS +RA + Sbjct: 529 FDYDKYDITVRAEIELEKVLFVLREFPAIKIKIESHTDA---RGKDAYNLKLSDNRAKAT 585 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 L+ G+ +RI +G+ ++LK S+ + NRR D ++ + Sbjct: 586 RDYLILKGIVANRIESANGYGEYQLKNECSNGVSCSEQKHLINRRSDFIIISK 638 >gi|294676839|ref|YP_003577454.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294475659|gb|ADE85047.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 334 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 85/271 (31%), Gaps = 52/271 (19%) Query: 103 DEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTD 162 D+ + V + + + Q E K ++ + + Sbjct: 45 DKEVVPRPVHETVVQERDSARQDVERLLLSIARLQAQIEDLKQTVATK------DARIAE 98 Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 LE+ + + E A K R ++ ++++S + +A ++G+ Sbjct: 99 LERQLAEALEKLKQRDPLEAYSARSTKAR-HEMIERLASAVKEDIAREKIEGLDVSAQGD 157 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHST------------------ 263 + + +F ++ +++ +G L Sbjct: 158 ALRFQ-----GSGLFASGQGGLSGNSLRIIRLLGAHLEGQLPCFTVGPRGAIAASCNPDL 212 Query: 264 ---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ-------------VLMKSGVSED 307 E + + GHTDA N LS+ RA SA+ +L + Sbjct: 213 VLIETVQVEGHTDADA---SQASNLTLSMLRATSAFNAIAPDAAQDDAPPMLAFQNLLGQ 269 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRIDI 336 + ++G+ R +D +ANRRID+ Sbjct: 270 PVLAVAGYGEMRPIGPNDSPEGKAANRRIDL 300 >gi|254477082|ref|ZP_05090468.1| OmpA/MotB [Ruegeria sp. R11] gi|214031325|gb|EEB72160.1| OmpA/MotB [Ruegeria sp. R11] Length = 331 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + L + L +TE I + GHTD N +S RA + Sbjct: 227 FETGAVELGAKPYDSLVALSSFLQDNTEFDILLVGHTDTV---GSLDQNIAISERRADAV 283 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 ++L S V RI ++G + ++ ANRR+++++ R Sbjct: 284 RRRLLEDSTVDRARI-AVAGAGYMAPLTSNQTPAGREANRRVEVVLIPR 331 >gi|260712903|ref|YP_003226958.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIB 11163] gi|258553429|gb|ACV76374.1| OmpA/MotB domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 273 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 45/174 (25%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + + ++G+ T + +F ++ +++ +G Sbjct: 73 LVEAVRADIKKEKIEGLEVSTQGDALRFQ-----GNGLFASGQGGLSGNSLRIIKLLGHH 127 Query: 259 LAH----------------------STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 LA E + + GHTD++ ++N LS RA SA+ Sbjct: 128 LADFMPCFAVGSKGAVALSCNPDLVMLETVQVEGHTDSN---GSHQNNLVLSTTRAISAF 184 Query: 297 -------------QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRID 335 ++L + I ++G+ R + +ANRRID Sbjct: 185 NEIVPDSKNNDMPEMLEFQNLLGQPIMAVAGYGEMRPVGNNATAVGRAANRRID 238 >gi|332519438|ref|ZP_08395905.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045286|gb|EGI81479.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 289 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%) Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +PL E +L I + + + +SI G TD R N LS +RA + ++ Sbjct: 34 VPLTEENRLLLFISSLDSININKVSIYGFTDD---RGTNEYNLELSQNRANTIKELFSGY 90 Query: 303 GVSEDRISKISGFAHHRLKIASDPM----NSANRRIDILV 338 GV + I+ ++G LK+ ++ NR+++I+V Sbjct: 91 GVDPNLITNVNGKGEILLKVLNEEEVHQIRGLNRKVEIIV 130 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 22/185 (11%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK---GVLFETTR 221 K +N+EE + + L+++ + + + + KK + D+ K + + + Sbjct: 109 KVLNEEEVHQIRGLNRKVEIIVNEQLATKKTTKKDKEAIVAKEDDDKEKTTEDIKSGSIK 168 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT-------D 273 G I + + F S S ++ L+K+ ++L +I+GH D Sbjct: 169 KGDKIRL----DKIYFKTSYSYVTSDSKKTLEKLAKILVEKDNLYFTIQGHVCCTQNSRD 224 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 A + R+ LS+ RA Y L + GV + R+ + G + + DP RR Sbjct: 225 AVDKKTKKRN---LSVSRAKYIYDYLARKGVDKRRMKYV-GM-RRKFPLGGDPKYD--RR 277 Query: 334 IDILV 338 ++ILV Sbjct: 278 VEILV 282 >gi|158422404|ref|YP_001523696.1| OmpA family protein [Azorhizobium caulinodans ORS 571] gi|158329293|dbj|BAF86778.1| OmpA family protein [Azorhizobium caulinodans ORS 571] Length = 199 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S+I LP++ + I + L + + G+TD + N +LS +RA Sbjct: 89 FKLNSAIILPDSYATIGAIADALHNPVLQGYRFIVTGNTDTT---GTREHNLKLSQERAD 145 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + + L + V+ R+ + G L+ +P + NRR+ I Sbjct: 146 AVVEALTTTFNVNPARLEAV-GLGEEALQDTKNPESPVNRRVQIF 189 >gi|129142|sp|P24755|OMPA_SEROD RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II gi|152839|gb|AAA26561.1| outer membrane protein II [Serratia odorifera] Length = 243 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDN 284 + ++ +F+ + S PE L ++ L+ + + G+TD P N Sbjct: 119 LFTLKSDVLFNSAKSSLKPEGQQALDQLYTQLSSMDPKDGSVVVLGYTD--PV-GKDAAN 175 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRIS--------KIS---GFAHHRLKIASDPMNSANRR 333 +LS RA S L+ G+ D+IS +++ G+ + R A + NRR Sbjct: 176 QKLSEARARSVVDYLVSKGIPADKISARGMGEADQVTDSCGYKNGRATKAQIECLAPNRR 235 Query: 334 IDILVE 339 ++I V+ Sbjct: 236 VEIEVK 241 >gi|332307349|ref|YP_004435200.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174678|gb|AEE23932.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 287 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ + L IG+ L +++ + + G++D+ R++ N LS+ RA Sbjct: 187 STDLTKYSQRRLNMIGQYLKEDSDMELVLLDGYSDSYGGRDM---NKTLSVSRAVEIKNY 243 Query: 299 LMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDI 336 + GV+ RI ++G R +++ + NRR+ I Sbjct: 244 FSEMGVAPQRIE-VTGHGERRHIAPNSNEMSRAKNRRVVI 282 >gi|226952116|ref|ZP_03822580.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp. ATCC 27244] gi|294648350|ref|ZP_06725858.1| peptidoglycan-associated lipoprotein [Acinetobacter haemolyticus ATCC 19194] gi|226837144|gb|EEH69527.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter sp. ATCC 27244] gi|292825762|gb|EFF84457.1| peptidoglycan-associated lipoprotein [Acinetobacter haemolyticus ATCC 19194] Length = 187 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 79 FDYDSSELSNEDYQTLQAHAQFLVANANSRVALTGHTDE---RGTREYNMALGERRAKAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + + NRR++I Sbjct: 136 ESFLVTNGVNPQQLEAVS-YGKEAPVNPGHNEAAWKENRRVEI 177 >gi|218700524|ref|YP_002408153.1| outer membrane protein A [Escherichia coli IAI39] gi|331646217|ref|ZP_08347320.1| outer membrane protein A [Escherichia coli M605] gi|218370510|emb|CAR18317.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli IAI39] gi|331044969|gb|EGI17096.1| outer membrane protein A [Escherichia coli M605] Length = 374 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 246 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 302 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 303 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 361 Query: 338 VE 339 V+ Sbjct: 362 VK 363 >gi|307718765|ref|YP_003874297.1| OmpA family protein [Spirochaeta thermophila DSM 6192] gi|306532490|gb|ADN02024.1| OmpA family protein [Spirochaeta thermophila DSM 6192] Length = 1337 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Query: 249 IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWR----LSLDRAYSAYQVLMKSG 303 +++++ ++ + I I GH A R+ LSL RA + Q L+ G Sbjct: 1241 RAIIERLVQIFTKYRRYKIRIEGH--AVNLSGTEREEREELVPLSLARAEAVKQALVAMG 1298 Query: 304 VSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 + RI+ +G + + NRR++ ++ Sbjct: 1299 LDPGRIT-TAGMGGRFPIVPHTDEKNRWKNRRVEFILL 1335 >gi|28898885|ref|NP_798490.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus RIMD 2210633] gi|1170999|sp|P46233|MOTY_VIBPA RecName: Full=Sodium-type flagellar protein motY; Flags: Precursor gi|497129|gb|AAA21574.1| MotY [Vibrio parahaemolyticus] gi|28807104|dbj|BAC60374.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus RIMD 2210633] gi|328474556|gb|EGF45361.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus 10329] Length = 293 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 187 YERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSESQS---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LRTYFESLGLPEDRI-QVQGYGKRRPIADNGTPIGKDKNRRVVISLGRTQ 292 >gi|86148066|ref|ZP_01066367.1| putative outer membrane protein [Vibrio sp. MED222] gi|85834126|gb|EAQ52283.1| putative outer membrane protein [Vibrio sp. MED222] Length = 203 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 10/163 (6%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT---P 235 +E + +++ DL + + G +I + Sbjct: 23 QREAYIETPEAEQIADLQDDDKDGVVNARDTCPSTPETSQVDNDGCGETIRAEEVRQLKI 82 Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P + + E L + + I I+G+ AS + N LS RA + Sbjct: 83 LFAHDSFEVNPIFSSQISTMAEFLENYKSASIEIQGY--ASKVGSNEY-NLDLSKKRANN 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRID 335 L+ +G+ +R+ +I G+ RL+ DP + + NR++ Sbjct: 140 VQDELLSNGIEPERV-RIVGYGEERLENDGDDPTSHALNRKVT 181 >gi|26246978|ref|NP_753018.1| outer membrane protein A [Escherichia coli CFT073] gi|26107378|gb|AAN79561.1|AE016758_165 Outer membrane protein A precursor [Escherichia coli CFT073] Length = 379 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 251 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 307 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 308 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 366 Query: 338 VE 339 V+ Sbjct: 367 VK 368 >gi|260431107|ref|ZP_05785078.1| peptidoglycan-associated lipoprotein [Silicibacter lacuscaerulensis ITI-1157] gi|260414935|gb|EEX08194.1| peptidoglycan-associated lipoprotein [Silicibacter lacuscaerulensis ITI-1157] Length = 167 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S E +LQ + +LA++ +I GH D N L R Sbjct: 57 DRVLFAVDQSTLSSEAQSILQGQADWLLANTDYTATIEGHADEQ---GTREYNLALGARR 113 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ +R+ +S + R +++ S NRR Sbjct: 114 ANAAREFLISRGVAGNRLQTVS-YGKERPIEICSTEECYSKNRR 156 >gi|170681860|ref|YP_001744213.1| outer membrane protein A [Escherichia coli SMS-3-5] gi|170519578|gb|ACB17756.1| outer membrane protein A [Escherichia coli SMS-3-5] Length = 358 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|332093647|gb|EGI98705.1| outer membrane protein A [Shigella boydii 3594-74] Length = 346 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|331641486|ref|ZP_08342621.1| outer membrane protein A [Escherichia coli H736] gi|331038284|gb|EGI10504.1| outer membrane protein A [Escherichia coli H736] Length = 370 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 242 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 298 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 299 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 357 Query: 338 VE 339 V+ Sbjct: 358 VK 359 >gi|323967204|gb|EGB62628.1| OmpA transmembrane domain-containing protein [Escherichia coli M863] gi|323976664|gb|EGB71752.1| OmpA transmembrane domain-containing protein [Escherichia coli TW10509] gi|327253749|gb|EGE65378.1| outer membrane protein A [Escherichia coli STEC_7v] Length = 350 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|323462898|pdb|3NB3|A Chain A, The Host Outer Membrane Proteins Ompa And Ompc Are Packed At Specific Sites In The Shigella Phage Sf6 Virion As Structural Components gi|323462899|pdb|3NB3|B Chain B, The Host Outer Membrane Proteins Ompa And Ompc Are Packed At Specific Sites In The Shigella Phage Sf6 Virion As Structural Components gi|323462900|pdb|3NB3|C Chain C, The Host Outer Membrane Proteins Ompa And Ompc Are Packed At Specific Sites In The Shigella Phage Sf6 Virion As Structural Components Length = 346 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|320192555|gb|EFW67196.1| Outer membrane protein A precursor [Escherichia coli O157:H7 str. EC1212] gi|320202354|gb|EFW76925.1| Outer membrane protein A precursor [Escherichia coli EC4100B] gi|323165436|gb|EFZ51223.1| outer membrane protein A [Shigella sonnei 53G] Length = 337 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 209 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 265 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 266 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 324 Query: 338 VE 339 V+ Sbjct: 325 VK 326 >gi|315619153|gb|EFU99733.1| outer membrane protein A [Escherichia coli 3431] Length = 346 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|309701236|emb|CBJ00536.1| outer membrane protein A [Escherichia coli ETEC H10407] Length = 346 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|170020642|ref|YP_001725596.1| outer membrane protein A [Escherichia coli ATCC 8739] gi|256023341|ref|ZP_05437206.1| outer membrane protein A [Escherichia sp. 4_1_40B] gi|307137587|ref|ZP_07496943.1| outer membrane protein A [Escherichia coli H736] gi|169755570|gb|ACA78269.1| OmpA domain protein transmembrane region-containing protein [Escherichia coli ATCC 8739] gi|320637825|gb|EFX07617.1| outer membrane protein A [Escherichia coli O157:H7 str. G5101] gi|320642950|gb|EFX12151.1| outer membrane protein A [Escherichia coli O157:H- str. 493-89] gi|320653723|gb|EFX21797.1| outer membrane protein A [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 365 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 237 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 293 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 294 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 352 Query: 338 VE 339 V+ Sbjct: 353 VK 354 >gi|38000008|gb|AAP74760.2| outer membrane protein A precursor [Shigella flexneri 2a] Length = 327 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 199 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 255 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 256 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 314 Query: 338 VE 339 V+ Sbjct: 315 VK 316 >gi|82776247|ref|YP_402596.1| outer membrane protein A [Shigella dysenteriae Sd197] gi|81240395|gb|ABB61105.1| outer membrane protein 3a [Shigella dysenteriae Sd197] Length = 350 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|51235578|gb|AAT98590.1| outer membrane protein A [Escherichia coli] Length = 346 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|30062494|ref|NP_836665.1| outer membrane protein A [Shigella flexneri 2a str. 2457T] gi|56479781|ref|NP_706879.2| outer membrane protein A [Shigella flexneri 2a str. 301] gi|82544719|ref|YP_408666.1| outer membrane protein A [Shigella boydii Sb227] gi|30040740|gb|AAP16471.1| outer membrane protein 3a (II*;G;d) [Shigella flexneri 2a str. 2457T] gi|56383332|gb|AAN42586.2| outer membrane protein 3a (II*;G;d) [Shigella flexneri 2a str. 301] gi|81246130|gb|ABB66838.1| outer membrane protein 3a [Shigella boydii Sb227] gi|313650796|gb|EFS15197.1| outer membrane protein A [Shigella flexneri 2a str. 2457T] gi|332759051|gb|EGJ89361.1| outer membrane protein A [Shigella flexneri 4343-70] gi|332759932|gb|EGJ90233.1| outer membrane protein A [Shigella flexneri 2747-71] gi|332762738|gb|EGJ93001.1| outer membrane protein A [Shigella flexneri K-671] gi|332767750|gb|EGJ97941.1| outer membrane protein 3a [Shigella flexneri 2930-71] gi|333001202|gb|EGK20770.1| outer membrane protein A [Shigella flexneri VA-6] gi|333006193|gb|EGK25702.1| outer membrane protein A [Shigella flexneri K-218] gi|333008941|gb|EGK28401.1| outer membrane protein A [Shigella flexneri K-272] gi|333020097|gb|EGK39368.1| outer membrane protein A [Shigella flexneri K-304] gi|333020253|gb|EGK39523.1| outer membrane protein A [Shigella flexneri K-227] Length = 348 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 220 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 276 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 277 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 335 Query: 338 VE 339 V+ Sbjct: 336 VK 337 >gi|309786688|ref|ZP_07681308.1| outer membrane protein A [Shigella dysenteriae 1617] gi|129143|sp|P02935|OMPA_SHIDY RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II; Flags: Precursor gi|46945|emb|CAA24638.1| unnamed protein product [Shigella dysenteriae] gi|308925381|gb|EFP70868.1| outer membrane protein A [Shigella dysenteriae 1617] Length = 351 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 223 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 280 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 338 Query: 338 VE 339 V+ Sbjct: 339 VK 340 >gi|15800816|ref|NP_286832.1| outer membrane protein A [Escherichia coli O157:H7 EDL933] gi|15830295|ref|NP_309068.1| outer membrane protein A [Escherichia coli O157:H7 str. Sakai] gi|16128924|ref|NP_415477.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12 substr. MG1655] gi|74311514|ref|YP_309933.1| outer membrane protein A [Shigella sonnei Ss046] gi|89107807|ref|AP_001587.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12 substr. W3110] gi|157160478|ref|YP_001457796.1| outer membrane protein A [Escherichia coli HS] gi|170080615|ref|YP_001729935.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12 substr. DH10B] gi|187730326|ref|YP_001880845.1| outer membrane protein A [Shigella boydii CDC 3083-94] gi|188493530|ref|ZP_03000800.1| outer membrane protein P5 [Escherichia coli 53638] gi|209918209|ref|YP_002292293.1| outer membrane protein A [Escherichia coli SE11] gi|218694432|ref|YP_002402099.1| outer membrane protein A [Escherichia coli 55989] gi|238900215|ref|YP_002926011.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli BW2952] gi|253774014|ref|YP_003036845.1| outer membrane protein A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161071|ref|YP_003044179.1| outer membrane protein A [Escherichia coli B str. REL606] gi|254792157|ref|YP_003076994.1| outer membrane protein A [Escherichia coli O157:H7 str. TW14359] gi|260843206|ref|YP_003220984.1| outer membrane protein A [Escherichia coli O103:H2 str. 12009] gi|260854249|ref|YP_003228140.1| outer membrane protein A [Escherichia coli O26:H11 str. 11368] gi|260867129|ref|YP_003233531.1| outer membrane protein A [Escherichia coli O111:H- str. 11128] gi|261227460|ref|ZP_05941741.1| outer membrane protein A [Escherichia coli O157:H7 str. FRIK2000] gi|261256117|ref|ZP_05948650.1| outer membrane protein A [Escherichia coli O157:H7 str. FRIK966] gi|307311656|ref|ZP_07591296.1| OmpA domain protein transmembrane region-containing protein [Escherichia coli W] gi|312971089|ref|ZP_07785268.1| outer membrane protein A [Escherichia coli 1827-70] gi|71159604|sp|P0A911|OMPA_ECO57 RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II*; Flags: Precursor gi|71159605|sp|P0A910|OMPA_ECOLI RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II*; Flags: Precursor gi|12514142|gb|AAG55443.1|AE005286_2 outer membrane protein 3a (II*;G;d) [Escherichia coli O157:H7 str. EDL933] gi|42161|emb|CAA23588.1| ompA protein [Escherichia coli] gi|1651465|dbj|BAA35715.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K12 substr. W3110] gi|1787191|gb|AAC74043.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12 substr. MG1655] gi|13360501|dbj|BAB34464.1| outer membrane protein 3a [Escherichia coli O157:H7 str. Sakai] gi|32329155|gb|AAP74759.1| outer membrane protein A precursor [Shigella sonnei] gi|73854991|gb|AAZ87698.1| outer membrane protein 3a (II*;G;d) [Shigella sonnei Ss046] gi|157066158|gb|ABV05413.1| outer membrane protein A [Escherichia coli HS] gi|169888450|gb|ACB02157.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli str. K-12 substr. DH10B] gi|187427318|gb|ACD06592.1| outer membrane protein A [Shigella boydii CDC 3083-94] gi|188488729|gb|EDU63832.1| outer membrane protein P5 [Escherichia coli 53638] gi|209774438|gb|ACI85531.1| outer membrane protein 3a [Escherichia coli] gi|209774440|gb|ACI85532.1| outer membrane protein 3a [Escherichia coli] gi|209774442|gb|ACI85533.1| outer membrane protein 3a [Escherichia coli] gi|209774444|gb|ACI85534.1| outer membrane protein 3a [Escherichia coli] gi|209774446|gb|ACI85535.1| outer membrane protein 3a [Escherichia coli] gi|209911468|dbj|BAG76542.1| outer membrane protein OmpA [Escherichia coli SE11] gi|218351164|emb|CAU96868.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli 55989] gi|238861958|gb|ACR63956.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli BW2952] gi|242376772|emb|CAQ31485.1| outer membrane protein 3a (II*;G;d) [Escherichia coli BL21(DE3)] gi|253325058|gb|ACT29660.1| OmpA domain protein transmembrane region-containing protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972972|gb|ACT38643.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli B str. REL606] gi|253977186|gb|ACT42856.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli BL21(DE3)] gi|254591557|gb|ACT70918.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli O157:H7 str. TW14359] gi|257752898|dbj|BAI24400.1| outer membrane protein A [Escherichia coli O26:H11 str. 11368] gi|257758353|dbj|BAI29850.1| outer membrane protein A [Escherichia coli O103:H2 str. 12009] gi|257763485|dbj|BAI34980.1| outer membrane protein A [Escherichia coli O111:H- str. 11128] gi|260449897|gb|ACX40319.1| OmpA domain protein transmembrane region-containing protein [Escherichia coli DH1] gi|306908211|gb|EFN38710.1| OmpA domain protein transmembrane region-containing protein [Escherichia coli W] gi|310336850|gb|EFQ02017.1| outer membrane protein A [Escherichia coli 1827-70] gi|315060242|gb|ADT74569.1| outer membrane protein A [Escherichia coli W] gi|315135605|dbj|BAJ42764.1| OmpA domain protein transmembrane region-containing protein precursor [Escherichia coli DH1] gi|320648407|gb|EFX17062.1| outer membrane protein A [Escherichia coli O157:H- str. H 2687] gi|320659566|gb|EFX27129.1| outer membrane protein A [Escherichia coli O55:H7 str. USDA 5905] gi|320664337|gb|EFX31488.1| outer membrane protein A [Escherichia coli O157:H7 str. LSU-61] gi|323157149|gb|EFZ43272.1| outer membrane protein A [Escherichia coli EPECa14] gi|323159587|gb|EFZ45567.1| outer membrane protein A [Escherichia coli E128010] gi|323174936|gb|EFZ60551.1| outer membrane protein A [Escherichia coli LT-68] gi|323175416|gb|EFZ61011.1| outer membrane protein A [Escherichia coli 1180] gi|323185333|gb|EFZ70697.1| outer membrane protein A [Escherichia coli 1357] gi|323379198|gb|ADX51466.1| OmpA/MotB domain protein [Escherichia coli KO11] gi|323938062|gb|EGB34324.1| OmpA transmembrane domain-containing protein [Escherichia coli E1520] gi|323942872|gb|EGB39037.1| OmpA transmembrane domain-containing protein [Escherichia coli E482] gi|323947254|gb|EGB43262.1| OmpA transmembrane domain-containing protein [Escherichia coli H120] gi|323962843|gb|EGB58418.1| OmpA transmembrane domain-containing protein [Escherichia coli H489] gi|323973167|gb|EGB68359.1| OmpA transmembrane domain-containing protein [Escherichia coli TA007] gi|324117179|gb|EGC11087.1| OmpA transmembrane domain-containing protein [Escherichia coli E1167] Length = 346 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|299769114|ref|YP_003731140.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. DR1] gi|298699202|gb|ADI89767.1| peptidoglycan-associated lipoprotein [Acinetobacter sp. DR1] Length = 186 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 78 FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 134 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + A ++ NRR++I Sbjct: 135 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 176 >gi|109897724|ref|YP_660979.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] gi|109700005|gb|ABG39925.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 287 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S+ + L IG+ L +++ + + G++D+ R++ N LS+ RA Sbjct: 187 STELTKYSQRRLNMIGQYLKEDSDMELVLLDGYSDSYGGRDM---NKTLSVSRAVEIKNY 243 Query: 299 LMKSGVSEDRISKISGFAHHR--LKIASDPMNSANRRIDI 336 GV+ RI ++G R ++ + NRR+ I Sbjct: 244 FSDMGVAPQRIE-VTGHGERRHIAPNTNEMSRAKNRRVVI 282 >gi|300982950|ref|ZP_07176384.1| outer membrane protein A [Escherichia coli MS 200-1] gi|300307039|gb|EFJ61559.1| outer membrane protein A [Escherichia coli MS 200-1] gi|315296266|gb|EFU55573.1| outer membrane protein A [Escherichia coli MS 16-3] gi|324012909|gb|EGB82128.1| outer membrane protein A [Escherichia coli MS 60-1] Length = 354 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|161520074|ref|YP_001583501.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160344124|gb|ABX17209.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] Length = 277 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 15/113 (13%) Query: 237 FDKSS-SIPLPETIVVLQ-KIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F KSS LP L I ++ A T I + GHTD N LS RA Sbjct: 165 FAKSSLDSMLPGGRAELDDAIAKIRAERGTTRIDVVGHTDRI---GSDESNRALSRARAE 221 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--------ANRRIDILV 338 + + L+ G+ RI + G + P S +RR+ I V Sbjct: 222 TVKRYLVAHGLDAARI-RTEGAGSSQPVSHCPPGESPAVIACLQKDRRVTITV 273 >gi|114320611|ref|YP_742294.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227005|gb|ABI56804.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 324 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L + VI GHTD+ A N RL RA + Sbjct: 221 FGFDHAGLTRTAKDALARFANQAGDDPHLQVIVAVGHTDS---AGPADYNERLGARRAEA 277 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 LM+ G++++RI ++ + +A D +ANRR+++ Sbjct: 278 VRAELMRRGIADERI-RLRSLGERQPAMAEDDGYGRAANRRVEV 320 >gi|218677868|ref|ZP_03525765.1| putative outer membrane protein, OmpA family [Rhizobium etli CIAT 894] Length = 145 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 10/106 (9%) Query: 237 FDKSSSIP----LPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V I +VL I GHTDA + N LS R Sbjct: 30 FATGSAEIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GTDQSNLVLSDQR 86 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S VL G+ + + G+ LK+ + NRR+ I Sbjct: 87 AESVANVLSDVYGIPPENL-ATQGYGERYLKVNTSGPEQENRRVTI 131 >gi|85705227|ref|ZP_01036326.1| OmpA family protein [Roseovarius sp. 217] gi|85670100|gb|EAQ24962.1| OmpA family protein [Roseovarius sp. 217] Length = 191 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F SS L++ + + +I GHTD+ R N LSL RA S Sbjct: 93 LFATDSSRIGASGQQRLREFFQQANAVSY--TIVGHTDS---RASDEYNMGLSLRRANSV 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + G+ I+ + G+ K +++ + NRR++IL Sbjct: 148 AA--VARGIGAS-IADVRGYGERMPKASNNTAEGMAQNRRVEIL 188 >gi|220923055|ref|YP_002498357.1| OmpA/MotB domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219947662|gb|ACL58054.1| OmpA/MotB domain protein [Methylobacterium nodulans ORS 2060] Length = 192 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +SS + + +G LA I I GHTD + R N RLS RA Sbjct: 81 FDFNSSRIGDAALPQVSTLGSSLARPELRDSTILIVGHTDG---KGSDRVNQRLSERRAE 137 Query: 294 SAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + Q ++++ V + + G+ RLK++++P +ANRR+ Sbjct: 138 AVKQYIVRNYDVPGANLISV-GYGKSRLKVSNNPYAAANRRVT 179 >gi|315185632|gb|EFU19400.1| OmpA/MotB domain protein [Spirochaeta thermophila DSM 6578] Length = 1337 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Query: 249 IVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWR----LSLDRAYSAYQVLMKSG 303 +++++ ++ + I I GH A R+ LSL RA + Q L+ G Sbjct: 1241 RAIIERLVQIFTKYRRYKIRIEGH--AVNLSGTEREEREELVPLSLARAEAVKQALVAMG 1298 Query: 304 VSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 + RI+ +G + + NRR++ ++ Sbjct: 1299 LDPGRIT-TAGMGGRFPIVPHTDEKNRWKNRRVEFILL 1335 >gi|300819200|ref|ZP_07099401.1| outer membrane protein A [Escherichia coli MS 107-1] gi|300528219|gb|EFK49281.1| outer membrane protein A [Escherichia coli MS 107-1] Length = 353 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 225 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 281 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 282 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 340 Query: 338 VE 339 V+ Sbjct: 341 VK 342 >gi|330889603|gb|EGH22264.1| OmpA family protein [Pseudomonas syringae pv. mori str. 301020] Length = 381 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%) Query: 42 TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 ++++A + + T A ++ FG +A G + P + + Sbjct: 6 SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSPAPAPVAKAA 65 Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + +++ + +L SE Sbjct: 66 AAPAAPAAGAENSAPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E ++ + +P + + + RL+ +K F+ R Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 L++I ++ ++ LP T+ + ++ +V+ + I GH D Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N ++S +RA S + SG+ +R+S+ G + A+D + NRR++IL+ Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285 Query: 339 EDR 341 + Sbjct: 286 TPQ 288 >gi|149277661|ref|ZP_01883801.1| possible outer membrane protein [Pedobacter sp. BAL39] gi|149231349|gb|EDM36728.1| possible outer membrane protein [Pedobacter sp. BAL39] Length = 174 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S + + +L ++ E+ T + G++ A N LS+DRA S Sbjct: 73 FEFNSDVLKTASFEILDQVVREMKKDLTVGFVLNGNSSAE---GSVEHNLSLSVDRANSV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 L+ +G+ + I GF + +D + NRR++I Sbjct: 130 KSYLVNAGIPAANL-SIKGFGATKPITTNDSEEGRALNRRVEI 171 >gi|157159269|ref|YP_001462189.1| outer membrane protein A [Escherichia coli E24377A] gi|331667340|ref|ZP_08368205.1| outer membrane protein A [Escherichia coli TA271] gi|51235576|gb|AAT98589.1| outer membrane protein A [Escherichia coli] gi|157081299|gb|ABV21007.1| outer membrane protein A [Escherichia coli E24377A] gi|331065696|gb|EGI37589.1| outer membrane protein A [Escherichia coli TA271] Length = 350 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|39937736|ref|NP_950012.1| outer membrane protein OprF [Rhodopseudomonas palustris CGA009] gi|39651596|emb|CAE30118.1| possible outer membrane protein OprF (AF117972) [Rhodopseudomonas palustris CGA009] Length = 216 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ + ++ +G+ L+ + GHTD+ N LS RA Sbjct: 106 FEYNSANISRQAAPAVEALGKALSSPDLKGGTFVVAGHTDSV---GSDSFNQDLSERRAD 162 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +VL++ G++ + + G+ RLK + P + NRR+ ++ Q Sbjct: 163 TIKRVLVEKYGIAGADLVTV-GYGESRLKDPAHPDSGINRRVQVVNMSDQ 211 >gi|88810551|ref|ZP_01125808.1| OmpA/MotB [Nitrococcus mobilis Nb-231] gi|88792181|gb|EAR23291.1| OmpA/MotB [Nitrococcus mobilis Nb-231] Length = 147 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S++ E + +L+ GE L+ ++I GHTD R N L RA + Sbjct: 45 FDFDSNVVKSEYMPILKAHGEYLSTHPENQVTIEGHTDE---RGSREYNLALGERRAKAV 101 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 ++L +G ++++IS +S + + + NRR I+ Sbjct: 102 QRILELNGAAKEQISTVS-YGEEKPLDPGHTEAALTKNRRALIV 144 >gi|332342400|gb|AEE55734.1| outer membrane protein OmpA [Escherichia coli UMNK88] Length = 350 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|325279496|ref|YP_004252038.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311305|gb|ADY31858.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712] Length = 782 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 34/134 (25%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE L+++ +L + + I + HTD N LS RA + Sbjct: 544 FDVAKWELRPEARQNLEELLTILEDNPNITIELSAHTD---MVGNDEANRILSEHRARAV 600 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------------------------- 330 L+ GV DR+ G+ + + ++ Sbjct: 601 VDYLIGKGVYWDRLEA-KGYGETQPRQINEKDAREYPFFKVGEVLNERFFGRLRGEQRET 659 Query: 331 ----NRRIDILVED 340 NRRI+ V Sbjct: 660 ALQLNRRIEFKVLR 673 >gi|227884084|ref|ZP_04001889.1| OOP family OmpA-OmpF porin [Escherichia coli 83972] gi|300978356|ref|ZP_07174229.1| outer membrane protein A [Escherichia coli MS 45-1] gi|301047785|ref|ZP_07194839.1| outer membrane protein A [Escherichia coli MS 185-1] gi|227838836|gb|EEJ49302.1| OOP family OmpA-OmpF porin [Escherichia coli 83972] gi|300300348|gb|EFJ56733.1| outer membrane protein A [Escherichia coli MS 185-1] gi|300409701|gb|EFJ93239.1| outer membrane protein A [Escherichia coli MS 45-1] gi|315291176|gb|EFU50536.1| outer membrane protein A [Escherichia coli MS 153-1] Length = 358 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|227539888|ref|ZP_03969937.1| OmpA/MotB [Sphingobacterium spiritivorum ATCC 33300] gi|227240166|gb|EEI90181.1| OmpA/MotB [Sphingobacterium spiritivorum ATCC 33300] Length = 446 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 95/311 (30%), Gaps = 45/311 (14%) Query: 53 IINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVD 112 I N +++ G + D Q+P + D+ + E Sbjct: 154 ISNLLNENKSNFAAALPAGLGLGAFGSLFADSDIQSPAVETPIPPADIPVVEPPVLTVPP 213 Query: 113 LKIGSTNQKKQYQRLENNIFY--------------LSNSQQSEHCKNSLTRDSEKGKDLC 158 + ++ R + + + G+D Sbjct: 214 VNPEPAIHTREAVREVKKSSGLWWILIPLVLVALWFLFGKSCAGNGAGTSDSTSNGRDTS 273 Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA-------DNI 211 T+ S+ + + IL + + L+ + I L + D+ Sbjct: 274 SMTNPSDSLGATDGL---SNRESVILKLPDGQELRAYPRGIEDNLIKFLQSDYKALPDDT 330 Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 +K F+ D N F+ ++ LP + L + +L + + I G Sbjct: 331 LKNKWFD----------FDNLN---FETGTAKILPASRDQLLNLAAILKVFPDAKVKIGG 377 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH---HRLKIASDPM 327 +TD + N +LSLDRA + L + G+ +++ G+ A + Sbjct: 378 YTDKT---GDEAFNKKLSLDRANAVKVFLDEQGL-GAQVAGTEGYGSEIARYPADAPESD 433 Query: 328 NSANRRIDILV 338 +RR+ + V Sbjct: 434 RIKDRRVSVSV 444 >gi|323492706|ref|ZP_08097850.1| outer membrane protein [Vibrio brasiliensis LMG 20546] gi|323313081|gb|EGA66201.1| outer membrane protein [Vibrio brasiliensis LMG 20546] Length = 279 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 21/165 (12%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-----FDKSSS 242 ++KRL +L ++ S + F+ ++IID+ + + F +S+ Sbjct: 111 QRKRLNELELQLDYVTSQAKCVPPMDENAFQQ-----RLAIIDKLYSLLNVDNQFAFNST 165 Query: 243 IPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 P+ + L + +L HS+ +++ GH D+ ++A N +L++ RA + L+ Sbjct: 166 EVNPKYMGHLARAANLLEQHSSLSLAVTGHADS--VGDLAY-NQKLAMGRAQQVKRYLII 222 Query: 302 SGVSEDRI--SKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 G+S +RI + + NRR+ I V D Q Sbjct: 223 FGLSPERIKTHSV---GDTLPLYEGESEGVRLTNRRVSIEVIDNQ 264 >gi|293414237|ref|ZP_06656886.1| OOP family OmpA-OmpF porin [Escherichia coli B185] gi|291434295|gb|EFF07268.1| OOP family OmpA-OmpF porin [Escherichia coli B185] Length = 350 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|218709831|ref|YP_002417452.1| putative outer membrane protein [Vibrio splendidus LGP32] gi|218322850|emb|CAV19027.1| putative outer membrane protein [Vibrio splendidus LGP32] Length = 211 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P + + E L + + I I+G+ AS + N LS RA + Sbjct: 91 LFAHDSFEVNPIFSSQISTMAEFLENYKSASIEIQGY--ASKVGSNEY-NLDLSKKRANN 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRRID 335 L+ +G+ +R+ +I G+ RL+ DP + + NR++ Sbjct: 148 VQDELLSNGIEPERV-RIVGYGEERLENDGDDPTSHALNRKVT 189 >gi|158422149|ref|YP_001523441.1| OmpA/MotB precursor [Azorhizobium caulinodans ORS 571] gi|158329038|dbj|BAF86523.1| OmpA/MotB precursor [Azorhizobium caulinodans ORS 571] Length = 164 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD + PE +L + + L +I GH D R N L R Sbjct: 56 DRVFFDTDQTDLSPEARAILDRQAQWLQQYNRYTFTIEGHADE---RGTREYNIALGAKR 112 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A + L G+ R+ IS + R + ++ S NRR Sbjct: 113 AQNVRDYLASRGIDPARMRTIS-YGKERPVAVCNDISCWSQNRR 155 >gi|148975972|ref|ZP_01812761.1| Conserved hypothetical outer membrane protein [Vibrionales bacterium SWAT-3] gi|145964717|gb|EDK29970.1| Conserved hypothetical outer membrane protein [Vibrionales bacterium SWAT-3] Length = 211 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%) Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 L ++++ +L + ++ S + K + R G+L I F Sbjct: 56 ALQIEQQSDSNELKQALARQSSLGINKTGCKTWISSQDRHGLLARIH-------FAFDQH 108 Query: 243 IPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P L ++ L S +++ GHTD+ N L + RA + L+ Sbjct: 109 SLTPMGSKALSQLASELQTSGSSVTVDGHTDS---SGDEGYNQALGMQRALTTSDALIVD 165 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 GV + + I F + +++ + NRR +I Sbjct: 166 GVDKHHLV-IRSFGESKPIASNETVEGRANNRRAEI 200 >gi|296101384|ref|YP_003611530.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055843|gb|ADF60581.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 313 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 16/198 (8%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 +GK +S P S A++ + R + L K+ + + Sbjct: 121 QGKQNPLQQLNAESAQTYFIQVNPGTSG-NTAALEERSRAEALLSKMHKQ--TKIINRAS 177 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRG 270 + + ++ I +Q +++ E+ L ++ + + V I I G Sbjct: 178 QVKTCDYINNSGVVLIQEQVLFRFAASNAAGIFAESRNKLDEVVKFTKKANNVSEIQIVG 237 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-----IASD 325 +TDA N RLS RA + +L++ G+ + I+ +G + AS Sbjct: 238 YTDAI---GSREANQRLSEARADTVRSLLIEKGIKPELINNTTGKGIAQSAEGCGTSASQ 294 Query: 326 PMNSAN---RRIDILVED 340 N RR++ILV+ Sbjct: 295 QAAGCNVNSRRVEILVKS 312 >gi|126173146|ref|YP_001049295.1| OmpA/MotB domain-containing protein [Shewanella baltica OS155] gi|125996351|gb|ABN60426.1| OmpA/MotB domain protein [Shewanella baltica OS155] Length = 485 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD S LPE+ VL+ + L + HTD + N LS RA + Sbjct: 378 LFDYDSERMLPESKPVLEVLASYLKQHPTLSFYVVEHTDD---KGERSYNQSLSERRAAA 434 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 + L + +++ G + +D NRR+++++ + Sbjct: 435 VIKQLSDGFQIPSAQLTA-HGNGEYSPVASNTNDAGQKLNRRVELVLRSDK 484 >gi|169632713|ref|YP_001706449.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii SDF] gi|169151505|emb|CAP00268.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii] Length = 191 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 83 FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ SGV+ ++ +S + ++ NRR++I Sbjct: 140 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 181 >gi|315180802|gb|ADT87716.1| sodium-type flagellar protein MotY [Vibrio furnissii NCTC 11218] Length = 294 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293 +D+ S + L +I E + ++ ++ + + +TD++ RN ++ LS RA Sbjct: 187 YDRGDSVELNKASQKRLAQIAEYIRYNPDIDLVLVSTYTDSTDGRNESQS---LSDKRAE 243 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 S + G+ DRI ++ G+ R + NRR+ I + Q Sbjct: 244 SLQKYFESLGLPSDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|78484705|ref|YP_390630.1| OmpA/MotB [Thiomicrospira crunogena XCL-2] gi|78362991|gb|ABB40956.1| OmpA/MotB family protein [Thiomicrospira crunogena XCL-2] Length = 230 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 266 ISIRGHTDASPF--RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 +S+ G+TD ++ R+NW LS RA + + L +S + ++G+ +R + Sbjct: 139 VSVAGYTDDDQIDPQSPLRNNWFLSTMRAQNVMKSLYQSSELKQSQFGVTGYGKYRPVAS 198 Query: 324 SDP--MNSANRRIDILV 338 ++ + NRR+ +++ Sbjct: 199 NETREGKAKNRRVQVMI 215 Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 70/194 (36%), Gaps = 2/194 (1%) Query: 32 SWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPE 91 SW + D +T+L+ FF++M ++N + + + +T + + Sbjct: 11 SWLFSFGDLVTLLITFFIMMIVLNKGEISQVQKWAESQLDTAYAQLTTQMADAEYVSLSR 70 Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDS 151 ++ +++S E K +L ++ Q + ++ + D+ Sbjct: 71 TANGISVNISHPEAFVKGGYNLSSALESELTQLGKALQSLKIFHLERSDVPIHILRIADA 130 Query: 152 EKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK--KISSTLSGLVAD 209 + + + + + + + P + + M+ + ++ L + ++ + G+ Sbjct: 131 DSLSWRSEVSVAGYTDDDQIDPQSPLRNNWFLSTMRAQNVMKSLYQSSELKQSQFGVTGY 190 Query: 210 NIVKGVLFETTRTG 223 + V TR G Sbjct: 191 GKYRPVASNETREG 204 >gi|332186615|ref|ZP_08388358.1| ompA family protein [Sphingomonas sp. S17] gi|332013267|gb|EGI55329.1| ompA family protein [Sphingomonas sp. S17] Length = 220 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ E Q L + I GHTD R AR N LS RA Sbjct: 118 FELNSARLSAEGTRAAQVFARSLLMPELKDKRFLIEGHTD---LRGGARINGPLSTARAK 174 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L+ GV R+ GF + NRR++ Sbjct: 175 AVADYLVTLGVDRSRLE-TRGFGSAMPLPGHSKADPVNRRVE 215 >gi|323135988|ref|ZP_08071071.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] gi|322399079|gb|EFY01598.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] Length = 341 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F + S+ + L K ++ +V I +RGH D DN LS+ R Sbjct: 241 DRVEFREGSAAITRQAAEALDKAVALIRRCPDVTIEVRGHADD--------DNEALSVRR 292 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 A + + L + G+ R+ ++G HR + A +++ Sbjct: 293 AQAVARYLRREGLGGRRVV-VAGHGAHRARTAKAELDAR 330 >gi|239815674|ref|YP_002944584.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110] gi|239802251|gb|ACS19318.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110] Length = 172 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE ++ L + +SI GHTD R N L R+ + Sbjct: 70 FDYDSYTVKPEFQSLIDGHARFLKANPQRRVSIEGHTDD---RGGREYNLALGQKRSEAV 126 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + L GVS+ +I +S F + + + + + NRR +I Sbjct: 127 RRALTLLGVSDAQIEAVS-FGKEKPAVQGSGEEAWAQNRRAEI 168 >gi|218553544|ref|YP_002386457.1| outer membrane protein A [Escherichia coli IAI1] gi|331676747|ref|ZP_08377443.1| outer membrane protein A [Escherichia coli H591] gi|218360312|emb|CAQ97862.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli IAI1] gi|331075436|gb|EGI46734.1| outer membrane protein A [Escherichia coli H591] Length = 374 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 246 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 302 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 303 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 361 Query: 338 VE 339 V+ Sbjct: 362 VK 363 >gi|120436709|ref|YP_862395.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] gi|117578859|emb|CAL67328.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803] Length = 536 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 12/116 (10%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSL 289 + +FD + + L I + E+ I IR HTD+ R + N +LS Sbjct: 412 DLDPILFDLDKAEIESKAARQLDHIAAYMQEYPELLIDIRSHTDS---RADDKYNIKLSQ 468 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 +R Q L+ GV +RIS G+ L + ++ NRR + ++ Sbjct: 469 NRVAVTRQYLVNMGVDGNRISG-RGYGETELVNNCRNKIPCPEDAHAINRRSEFIL 523 >gi|254443045|ref|ZP_05056521.1| OmpA family protein [Verrucomicrobiae bacterium DG1235] gi|198257353|gb|EDY81661.1| OmpA family protein [Verrucomicrobiae bacterium DG1235] Length = 512 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ PE + ++++ ++L + + I + GHT A R A N +LS +RA S Sbjct: 403 FQSGTAGLSPEGVSSIEEMVDILQNYPDFRILVAGHTSA---RGDAEANRQLSEERARSV 459 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRL-KIASDPMNS-ANR--RID 335 + L+ + EDR+ + L ++A + + NR R++ Sbjct: 460 AKYLVDHYAIDEDRVRAVGVGGEQPLRRLAGESYRAHQNRLSRVE 504 >gi|331651979|ref|ZP_08352998.1| outer membrane protein A (Outer membrane protein II) [Escherichia coli M718] gi|331050257|gb|EGI22315.1| outer membrane protein A (Outer membrane protein II) [Escherichia coli M718] Length = 375 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 247 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 303 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 304 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 362 Query: 338 VE 339 V+ Sbjct: 363 VK 364 >gi|304395220|ref|ZP_07377104.1| OmpA/MotB domain protein [Pantoea sp. aB] gi|304357473|gb|EFM21836.1| OmpA/MotB domain protein [Pantoea sp. aB] Length = 157 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F + S P + +Q + + LA + E + I GHTD N +LSL R Sbjct: 49 DKILFGVNESELTPSSKSNIQGMAKNLASTGIEHVRIDGHTDNY---GKPDYNQQLSLKR 105 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338 A + G S R + ++ G +++ + NRR+ I++ Sbjct: 106 ANAVAAQ-WAEGASIPRGNIVTRGLGMSAPVTSNNSAQGRAQNRRVAIVI 154 >gi|119383439|ref|YP_914495.1| OmpA domain-containing protein [Paracoccus denitrificans PD1222] gi|119373206|gb|ABL68799.1| OmpA domain protein [Paracoccus denitrificans PD1222] Length = 173 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 +T +F S PE V+L L + + I GH D N L R Sbjct: 63 DTVLFPLDQSTLTPEARVILANQAGWLNQNAGFAAVIEGHADEQ---GTREYNLALGARR 119 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A S + L+ G++ R+ +S + R +++ + NRR Sbjct: 120 ANSVQEYLISQGIAPGRLRTVS-YGKERPLAICSTEECFTKNRR 162 >gi|332279861|ref|ZP_08392274.1| outer membrane protein A [Shigella sp. D9] gi|332102213|gb|EGJ05559.1| outer membrane protein A [Shigella sp. D9] Length = 374 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 246 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 302 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 303 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 361 Query: 338 VE 339 V+ Sbjct: 362 VK 363 >gi|238055498|sp|B7LNW7|OMPA_ESCF3 RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II; Flags: Precursor Length = 351 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 223 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 280 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 338 Query: 338 VE 339 V+ Sbjct: 339 VK 340 >gi|110804972|ref|YP_688492.1| outer membrane protein A [Shigella flexneri 5 str. 8401] gi|110614520|gb|ABF03187.1| outer membrane protein 3a [Shigella flexneri 5 str. 8401] Length = 348 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 220 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 276 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 RA S L+ G+ D+IS G + N + +RR++I Sbjct: 277 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKRRAALIDCLAPDRRVEIE 335 Query: 338 VE 339 V+ Sbjct: 336 VK 337 >gi|323492355|ref|ZP_08097508.1| sodium-type flagellar protein MotY precursor [Vibrio brasiliensis LMG 20546] gi|323313402|gb|EGA66513.1| sodium-type flagellar protein MotY precursor [Vibrio brasiliensis LMG 20546] Length = 293 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S ++ L +I E + H+ ++ + + +TDA ++ ++ LS RA Sbjct: 187 YDRTSVELNKQSQKRLAQIAEYIKHNQDIDLVLVSTYTDAEDSKSASQS---LSERRAEV 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LQEYFKSLGLPEDRI-RVQGYGKRRPIDDNASPIGKDRNRRVVISLGRTQ 292 >gi|319427140|gb|ADV55214.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 197 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 254 KIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + + +++ GHTD N++LSL RA + ++L++ G + +R + Sbjct: 109 ALVKAFLEANNDVALILVGHTD---IVGTPEFNYQLSLQRAENVRRILVEDYGFNPNRFT 165 Query: 311 KIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 + G + S NRR+ +V ++ Sbjct: 166 IVGKGISEPVADNRSSEGRRLNRRVQFIVNNK 197 >gi|189010293|ref|ZP_02805910.2| outer membrane protein A [Escherichia coli O157:H7 str. EC4076] gi|208815928|ref|ZP_03257107.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4045] gi|208822372|ref|ZP_03262691.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4042] gi|209397392|ref|YP_002269625.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4115] gi|217325746|ref|ZP_03441830.1| outer membrane protein A [Escherichia coli O157:H7 str. TW14588] gi|291281957|ref|YP_003498775.1| OmpA domain protein transmembrane region-containing protein precursor [Escherichia coli O55:H7 str. CB9615] gi|293433254|ref|ZP_06661682.1| OOP family OmpA-OmpF porin [Escherichia coli B088] gi|300929657|ref|ZP_07145117.1| outer membrane protein A [Escherichia coli MS 187-1] gi|300949672|ref|ZP_07163655.1| outer membrane protein A [Escherichia coli MS 116-1] gi|300955388|ref|ZP_07167765.1| outer membrane protein A [Escherichia coli MS 175-1] gi|301022508|ref|ZP_07186383.1| outer membrane protein A [Escherichia coli MS 196-1] gi|301643481|ref|ZP_07243528.1| outer membrane protein A [Escherichia coli MS 146-1] gi|189001311|gb|EDU70297.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4076] gi|208732576|gb|EDZ81264.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4045] gi|208737857|gb|EDZ85540.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4042] gi|209158792|gb|ACI36225.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4115] gi|217321967|gb|EEC30391.1| outer membrane protein A [Escherichia coli O157:H7 str. TW14588] gi|290761830|gb|ADD55791.1| OmpA domain protein transmembrane region-containing protein precursor [Escherichia coli O55:H7 str. CB9615] gi|291324073|gb|EFE63495.1| OOP family OmpA-OmpF porin [Escherichia coli B088] gi|299881205|gb|EFI89416.1| outer membrane protein A [Escherichia coli MS 196-1] gi|300317723|gb|EFJ67507.1| outer membrane protein A [Escherichia coli MS 175-1] gi|300450941|gb|EFK14561.1| outer membrane protein A [Escherichia coli MS 116-1] gi|300462395|gb|EFK25888.1| outer membrane protein A [Escherichia coli MS 187-1] gi|301078120|gb|EFK92926.1| outer membrane protein A [Escherichia coli MS 146-1] gi|320187167|gb|EFW61868.1| Outer membrane protein A precursor [Shigella flexneri CDC 796-83] gi|324019104|gb|EGB88323.1| outer membrane protein A [Escherichia coli MS 117-3] gi|326338147|gb|EGD61976.1| Outer membrane protein A precursor [Escherichia coli O157:H7 str. 1125] Length = 354 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 226 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|170725642|ref|YP_001759668.1| OmpA/MotB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810989|gb|ACA85573.1| OmpA/MotB domain protein [Shewanella woodyi ATCC 51908] Length = 367 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS+ E+ ++K+ + + + I GH A N LS RA + Sbjct: 256 FANNSSVVKNESYQQIEKLANYMNQHPKSTVLISGHASDV---GKAEYNMMLSDKRANAV 312 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 ++L++ G+++DR+ GF + I +S N ANRRI+ Sbjct: 313 AKILVEKYGIAQDRVEA-KGFGITQPIIEGSSPAANKANRRIE 354 >gi|120598160|ref|YP_962734.1| OmpA/MotB domain-containing protein [Shewanella sp. W3-18-1] gi|120558253|gb|ABM24180.1| OmpA/MotB domain protein [Shewanella sp. W3-18-1] Length = 196 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 254 KIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + + +++ GHTD N++LSL RA + ++L++ G + +R + Sbjct: 108 ALVKAFLEANNDVALLLVGHTD---IVGTPEFNYQLSLQRAENVRRILVEDYGFNPNRFT 164 Query: 311 KIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 + G + S NRR+ +V ++ Sbjct: 165 IVGKGISEPVADNRSSEGRRLNRRVQFIVNNK 196 >gi|146293768|ref|YP_001184192.1| OmpA/MotB domain-containing protein [Shewanella putrefaciens CN-32] gi|145565458|gb|ABP76393.1| OmpA/MotB domain protein [Shewanella putrefaciens CN-32] Length = 196 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 254 KIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS 310 + + + +++ GHTD N++LSL RA + ++L++ G + +R + Sbjct: 108 ALVKAFLEANNDVALILVGHTD---IVGTPEFNYQLSLQRAENVRRILVEDYGFNPNRFT 164 Query: 311 KIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 + G + S NRR+ +V ++ Sbjct: 165 IVGKGISEPVADNRSSEGRRLNRRVQFIVNNK 196 >gi|315605392|ref|ZP_07880435.1| OmpA family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312961|gb|EFU61035.1| OmpA family protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 184 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S +L + E +S+ GHTD+ N LS RA + Sbjct: 83 FEVDSDQLTARAREILDSLASEWSKTKPSKVSVTGHTDSVA---DDAHNLDLSKRRAKAV 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L S V I+ G + D + NRR++I Sbjct: 140 GDYL-ASKVPGLSIT-TDGKGEAEPIADNETDEGRAQNRRVEI 180 >gi|320196555|gb|EFW71178.1| Outer membrane protein A precursor [Escherichia coli WV_060327] gi|330910729|gb|EGH39239.1| outer membrane protein A precursor [Escherichia coli AA86] Length = 358 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQALS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|312621091|ref|YP_003993819.1| outer membrane protein, ompa/motb family [Photobacterium damselae subsp. damselae] gi|311872812|emb|CBX86903.1| outer membrane protein, OmpA/MotB family [Photobacterium damselae subsp. damselae] Length = 210 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 + D+ L ++ FE + I D F+ +S +I Sbjct: 64 QQYDIVDVDKELLKNILGKMNSGEKCFEYLLSNASIERDDTTARVYFNFDNSKLTRASIY 123 Query: 251 VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 +L K+ E + S I GHTD+ N L RA S + + +GV+ ++ Sbjct: 124 ILNKLIENVKASKSNYLIEGHTDSV---GTTSYNKDLGYRRAKSVIEFFVGNGVNRSQLQ 180 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDI 336 IS + +D S NRR++I Sbjct: 181 GIS-EGELKPLETNDTSIGRSYNRRVEI 207 >gi|260778741|ref|ZP_05887633.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604905|gb|EEX31200.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] Length = 279 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 16/163 (9%) Query: 188 RKKRLQDLAKKISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI 243 ++KRL +L +++ S D + +D + F +S+ Sbjct: 111 QRKRLDELERQLDYVTSQAKCVPPHDEFSFQQQLAIIDKLYNLLNVDNQ----FAFNSTE 166 Query: 244 PLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ + L + +L H + +++ GH D+ N +L++ RA + L Sbjct: 167 VNPKYMGHLAQAANILREHKSLNLTVTGHADSV---GDELQNQQLAMGRAKQVKRYLTIF 223 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI-LVEDRQ 342 G+ RI S + NRR+ I +VE + Sbjct: 224 GLEPKRIEAKS-LGESLPLFEGESDGVRLTNRRVSIEVVETNE 265 >gi|326346124|gb|EGD69862.1| Outer membrane protein A precursor [Escherichia coli O157:H7 str. 1044] Length = 273 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 145 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 201 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 202 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 260 Query: 338 VE 339 V+ Sbjct: 261 VK 262 >gi|288918113|ref|ZP_06412470.1| OmpA/MotB domain protein [Frankia sp. EUN1f] gi|288350495|gb|EFC84715.1| OmpA/MotB domain protein [Frankia sp. EUN1f] Length = 186 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD S + PE L I + + + G++D N LS +RA + Sbjct: 89 LFDADSDVLRPEAATALAGIVPQIREHDGKVQVVGYSDGL---GSTEHNLELSRERAVAV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L + + ++ A + +++ RR++I++ Sbjct: 146 QTYLTSQDIPAA-MLEVVAKGE--AGAADNVADASRRRVEIVL 185 >gi|256018784|ref|ZP_05432649.1| outer membrane protein A [Shigella sp. D9] Length = 369 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 241 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 297 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 298 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 356 Query: 338 VE 339 V+ Sbjct: 357 VK 358 >gi|218548466|ref|YP_002382257.1| outer membrane protein A [Escherichia fergusonii ATCC 35469] gi|218356007|emb|CAQ88623.1| outer membrane protein A (3a;II*;G;d) [Escherichia fergusonii ATCC 35469] Length = 375 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 247 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 303 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 304 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 362 Query: 338 VE 339 V+ Sbjct: 363 VK 364 >gi|329893686|ref|ZP_08269820.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma proteobacterium IMCC3088] gi|328923613|gb|EGG30925.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma proteobacterium IMCC3088] Length = 182 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS VL K +L ++ + + GHTD R N L RA + Sbjct: 84 FEFDSSTLTDTGRAVLDKHVALLKNTGASVRLEGHTDE---RGTREYNMALGERRANAVR 140 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 +M G+ R+ IS F + +S+ S NRR++I Sbjct: 141 DYMMVKGIPGYRLESIS-FGEEKPVSYGSSEVSWSQNRRVEI 181 >gi|260769061|ref|ZP_05877995.1| sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP 102972] gi|260617091|gb|EEX42276.1| sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP 102972] Length = 294 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293 +D+ S + L +I E + ++ ++ + + +TD++ RN ++ LS RA Sbjct: 187 YDRGDSVELNKASQKRLAQIAEYIRYNPDIDLVLVSTYTDSTDGRNESQS---LSDKRAE 243 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 S + G+ DRI ++ G+ R + NRR+ I + Q Sbjct: 244 SLQKYFESLGLPSDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|209965094|ref|YP_002298009.1| outer membrane lipoprotein omp16 [Rhodospirillum centenum SW] gi|209958560|gb|ACI99196.1| outer membrane lipoprotein omp16 [Rhodospirillum centenum SW] Length = 163 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F PE L + L V +++ GH D R N L R Sbjct: 58 DRVFFGFDRFDLTPEATATLDRQAAWLKQYPNVTVTVEGHADE---RGTREYNLALGERR 114 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDIL 337 A + L GV R+ IS + SD + NRR + ++ Sbjct: 115 ATAVKNYLTALGVDTARVQTISYGKERPAVLGSDESAWAQNRRGVTVI 162 >gi|146338272|ref|YP_001203320.1| Outer membrane lipoprotein omp16 [Bradyrhizobium sp. ORS278] gi|146191078|emb|CAL75083.1| Outer membrane lipoprotein omp16 precursor (peptidoglycan-associated lipoprotein) [Bradyrhizobium sp. ORS278] Length = 149 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ I L+K + L +I GH D R N L R Sbjct: 41 DRVFFESDQTDLTPQAIATLEKQAQWLQSYPRYSFTIEGHADE---RGTREYNIALGARR 97 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L+ G+ + R+ IS + R + ++ S NRR Sbjct: 98 AQSVRNFLVSRGIDQSRMRTIS-YGKERPVAVCNDISCWSQNRR 140 >gi|291615400|ref|YP_003525557.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291585512|gb|ADE13170.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 204 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++ + E+I ++ I E+ + + + GH + N LS+ RA Sbjct: 103 FEEDGAKLTAESINMIADIRQEITRRAAPEVVVTGHASR---AGMDETNLSLSMQRAKVV 159 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 VL+ GV +I ++ G + + +RR++I V Sbjct: 160 RDVLVAGGVPA-QIIQVVGRGEFDPAATTQDGVAGPPSRRVEITV 203 >gi|221209446|ref|ZP_03582427.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] gi|221170134|gb|EEE02600.1| OmpA/MotB domain protein [Burkholderia multivorans CGD1] Length = 159 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 +K F+ T G +FD P+ ++++IG L + + + + G Sbjct: 34 LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 90 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD + LS RA L+ G+ RI I G H + + M Sbjct: 91 YTDDE---GADGYDLELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 145 Query: 328 NSANRRIDILVEDR 341 + NRR I+V R Sbjct: 146 RAQNRRAAIVVSPR 159 >gi|167624709|ref|YP_001675003.1| OmpA/MotB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354731|gb|ABZ77344.1| OmpA/MotB domain protein [Shewanella halifaxensis HAW-EB4] Length = 321 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F SS + T + + + V+A I I +TD+ N LS RA Sbjct: 219 KSLFGFDSSKLVA-TEALAEVLKNVIASKDTEICITAYTDSL---GAKEYNLTLSKQRAE 274 Query: 294 SAYQVLMKSGVSEDRISKI--SGFAHHRLKIASDPMNSANRRIDI 336 + + +GV RI + G A + + NRR+ I Sbjct: 275 ATRSYFISNGVEPSRIH-VDWKGEASPVATNRTAEGRALNRRVKI 318 >gi|331672486|ref|ZP_08373276.1| outer membrane protein A [Escherichia coli TA280] gi|331070392|gb|EGI41757.1| outer membrane protein A [Escherichia coli TA280] Length = 370 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 242 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 298 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 299 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 357 Query: 338 VE 339 V+ Sbjct: 358 VK 359 >gi|331662369|ref|ZP_08363292.1| outer membrane protein A [Escherichia coli TA143] gi|331682461|ref|ZP_08383080.1| outer membrane protein A [Escherichia coli H299] gi|331060791|gb|EGI32755.1| outer membrane protein A [Escherichia coli TA143] gi|331080092|gb|EGI51271.1| outer membrane protein A [Escherichia coli H299] Length = 346 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|284920801|emb|CBG33864.1| outer membrane protein A [Escherichia coli 042] Length = 350 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|218704380|ref|YP_002411899.1| outer membrane protein A [Escherichia coli UMN026] gi|293404256|ref|ZP_06648250.1| outer membrane protein A [Escherichia coli FVEC1412] gi|298380040|ref|ZP_06989645.1| outer membrane protein A [Escherichia coli FVEC1302] gi|51235574|gb|AAT98588.1| outer membrane protein A [Escherichia coli] gi|218431477|emb|CAR12355.1| outer membrane protein A (3a;II*;G;d) [Escherichia coli UMN026] gi|291428842|gb|EFF01867.1| outer membrane protein A [Escherichia coli FVEC1412] gi|298279738|gb|EFI21246.1| outer membrane protein A [Escherichia coli FVEC1302] Length = 346 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|325102858|ref|YP_004272512.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324971706|gb|ADY50690.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 141 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 12/103 (11%) Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 P+ V L K+ ++L + + I + HTD+ R N LS RA SA ++ Sbjct: 40 IRPDAAVELDKLVKILKDNPTIWIELGSHTDS---RGKDAYNLNLSQKRAESAVGYIVSR 96 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 G+ ++RI+ G+ +L ++ + NRR + + Sbjct: 97 GIDKNRIAA-RGYGETQLLNRCSNGVECTEEEHQLNRRTEFKI 138 >gi|238761919|ref|ZP_04622893.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia kristensenii ATCC 33638] gi|238700033|gb|EEP92776.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia kristensenii ATCC 33638] Length = 169 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 N +FD + +Q IG L + + + GHTDA N +LS +R Sbjct: 62 NKVLFDSDVRKLNASGVQTVQHIGRALHNVGINHMRVDGHTDAM---GEDGYNQKLSYER 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + L G+ I + G + + NRR+ ++V Sbjct: 119 ASAVADSLAAIGIPRANIE-VHGRGKLEPVADNRTSKGRAENRRVAMIV 166 >gi|158536391|gb|ABW72720.1| outer membrane protein A [Escherichia coli] gi|158536395|gb|ABW72722.1| outer membrane protein A [Escherichia coli] gi|158536397|gb|ABW72723.1| outer membrane protein A [Escherichia coli] Length = 358 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|161520167|ref|YP_001583594.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160344217|gb|ABX17302.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] Length = 185 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 +K F+ T G +FD P+ ++++IG L + + + + G Sbjct: 60 LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 116 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD D LS RA L+ G+ RI I G H + + M Sbjct: 117 YTDDE--GTDGYD-LELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 171 Query: 328 NSANRRIDILVEDR 341 + NRR I+V R Sbjct: 172 RAQNRRAAIVVSPR 185 >gi|129138|sp|P24754|OMPA_ESCHE RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II gi|146987|gb|AAA24234.1| outer membrane protein II [Escherichia hermannii] gi|146995|gb|AAA24238.1| outer membrane protein II [Escherichia hermannii] Length = 243 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 124 KSDVLFNFNKATLKPEGQQALDQMYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 180 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 181 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 239 Query: 338 VE 339 V+ Sbjct: 240 VK 241 >gi|283484404|gb|ADB23432.1| OmpA [Cronobacter sakazakii] Length = 347 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 219 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 275 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 276 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIECLGPDRRVEIE 334 Query: 338 VE 339 V+ Sbjct: 335 VK 336 >gi|197121340|ref|YP_002133291.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|220916043|ref|YP_002491347.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196171189|gb|ACG72162.1| OmpA/MotB domain protein [Anaeromyxobacter sp. K] gi|219953897|gb|ACL64281.1| OmpA/MotB domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 170 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 24/153 (15%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K + G ++N F + P ++++ L Sbjct: 28 KKAAGQATVGKLEKEINRRLLEEG-------RKNQCSFKTDTDQLEPGCDQKMKRLSNAL 80 Query: 260 AHSTEVIS----------IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + ++ + GHTD A N LS RA + L+ G+ + I Sbjct: 81 VDAKKRLNGAGVKNFKFVVSGHTDT---SGSAAHNQELSARRAAVIEKELVARGIPQAEI 137 Query: 310 SKISGFAHHRLKIASD---PMNSANRRIDILVE 339 + G + + D + NRR ++ V+ Sbjct: 138 ESV-GMGSKKPLVKPDDTPAKKAKNRRYELQVK 169 >gi|188584571|ref|YP_001928016.1| peptidoglycan-associated lipoprotein [Methylobacterium populi BJ001] gi|179348069|gb|ACB83481.1| peptidoglycan-associated lipoprotein [Methylobacterium populi BJ001] Length = 170 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ S+ P L K L I GH D R L R Sbjct: 60 DRVFFESDSTDLTPTATATLDKQASWLQRYPRYSFLIEGHADERGTREYNYS---LGARR 116 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337 A + L G+S R+ +S + R + ++ S NRR + +L Sbjct: 117 AQTVQDYLASRGISASRMRTVS-YGKERPVAVCNDISCWSQNRRAVSVL 164 >gi|126664571|ref|ZP_01735555.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] gi|126630897|gb|EBA01511.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] Length = 147 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%) Query: 250 VVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L + G L + + GH+DA F ++ LS RA + + L++ GV E R Sbjct: 52 DMLTRHGHYLRRNVHLHVRVHGHSDA--FGTDDYGHF-LSRMRASAVVRFLIEEGVEEQR 108 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDI 336 + + G+ R A+ ++ANRR+++ Sbjct: 109 LKAV-GWGSDRPL-ATRADHAANRRVEL 134 >gi|126642630|ref|YP_001085614.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter baumannii ATCC 17978] Length = 170 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 62 FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 118 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ SGV+ ++ +S + ++ NRR++I Sbjct: 119 QNYLITSGVNPQQLEAVS-YGKEAPVNPGHDESAWKENRRVEI 160 >gi|119898879|ref|YP_934092.1| outer membrane protein A [Azoarcus sp. BH72] gi|119671292|emb|CAL95205.1| outer membrane protein A precursor [Azoarcus sp. BH72] Length = 238 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L + + + GHTD N +LS RA + Sbjct: 124 LFDFDKAVLKPEGRTKLDDLAAKAKGIKLEVILAVGHTDRL---GSDSYNQKLSERRAAA 180 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 L+ GV +R+ G + + + N RR+++ V Sbjct: 181 VKTYLVSKGVEANRVY-TEGKGEKQPVTGNKCDSVKNRKALIECLQPDRRVEVEV 234 >gi|293409335|ref|ZP_06652911.1| outer membrane protein A [Escherichia coli B354] gi|291469803|gb|EFF12287.1| outer membrane protein A [Escherichia coli B354] Length = 350 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 222 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 279 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|158536385|gb|ABW72717.1| outer membrane protein A [Escherichia coli] gi|158536387|gb|ABW72718.1| outer membrane protein A [Escherichia coli] gi|158536389|gb|ABW72719.1| outer membrane protein A [Escherichia coli] gi|158536393|gb|ABW72721.1| outer membrane protein A [Escherichia coli] gi|158536399|gb|ABW72724.1| outer membrane protein A [Escherichia coli] gi|158536401|gb|ABW72725.1| outer membrane protein A [Escherichia coli] Length = 358 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|281600319|gb|ADA73303.1| Outer membrane protein A [Shigella flexneri 2002017] Length = 356 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 228 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 285 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 343 Query: 338 VE 339 V+ Sbjct: 344 VK 345 >gi|294670063|ref|ZP_06735018.1| OmpA family protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308146|gb|EFE49389.1| OmpA family protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 162 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 6/135 (4%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR 269 + + R G I ++ N SS++ + + + ++I Sbjct: 21 ESLANTGVDVERNGNQIKLVMPENVTFPTNSSTLNANAQNALAAAAQTLTQYHDTTLTIN 80 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GHTD + N LS RA + L GVS R++ I G + ++ Sbjct: 81 GHTDNT---GSDAINDPLSQRRAQAVASYLQSRGVSASRMN-IFGHGSRQPIASNATVEG 136 Query: 328 NSANRRIDILVEDRQ 342 + NRR++IL+ Q Sbjct: 137 RAQNRRVEILINPDQ 151 >gi|119502996|ref|ZP_01625081.1| conserved hypothetical OmpA family protein [marine gamma proteobacterium HTCC2080] gi|119461342|gb|EAW42432.1| conserved hypothetical OmpA family protein [marine gamma proteobacterium HTCC2080] Length = 297 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 7/155 (4%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 ++ L + ++ + L N ++ E + +++ + +F + S Sbjct: 131 TEQALLNTQADLALAYTELDKVNADLEIVQEEQQRFAKLALEQLQLEMLFKTNDSRLTAG 190 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 L + L + + I G+ D R + N LSL RA Q L+ SGV+ Sbjct: 191 GEDRLSLLASFLTRNENLSVRIEGYADP---RGDSASNMALSLARAERVAQQLIDSGVAA 247 Query: 307 DRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 +R++ +S + ++ + +RR+ I ++ Sbjct: 248 NRMT-VSAHGESQALAGDGDIDAYALDRRVHIALD 281 >gi|163749262|ref|ZP_02156511.1| OmpA family protein [Shewanella benthica KT99] gi|161330981|gb|EDQ01907.1| OmpA family protein [Shewanella benthica KT99] Length = 220 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 ++ TR+G I + N F P VL + V + ++I G Sbjct: 92 LQSTGVSVTRSGDNIVLN-MPNEVTFGVDEVHLNPGAKKVLNSVALVAKEYDQTQLNILG 150 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MN 328 +TD+ N RLS RA L+ V R+ G R ++ Sbjct: 151 YTDS---SGSESYNLRLSKIRAIEVGNYLVGQNVEYARVKS-EGIGEARPISSNTTAAGR 206 Query: 329 SANRRIDILV 338 + NRR++I++ Sbjct: 207 AQNRRVEIIL 216 >gi|37704614|gb|AAR01579.1| OprF [Pseudomonas sp. MFY61] Length = 316 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322 QVL + GV RI + G+ R Sbjct: 290 KQVLTQQYGVESSRIDSV-GYGETRPVA 316 >gi|170769190|ref|ZP_02903643.1| outer membrane protein A [Escherichia albertii TW07627] gi|170121842|gb|EDS90773.1| outer membrane protein A [Escherichia albertii TW07627] Length = 358 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|330807890|ref|YP_004352352.1| hypothetical protein PSEBR_a1170 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375998|gb|AEA67348.1| Conserved hypothetical protein; putative outer membrane protein, putative OmpA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 370 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 16/262 (6%) Query: 85 DEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCK 144 D + S D + + + Q K + S+ K Sbjct: 25 DAEGGSSWWSFGSSDKVVAKDTAPAAPLKPAAVAPQAKAESATHWWWPFSSDDAADVAKK 84 Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE--KILAMKRKKRLQDLAKKISST 202 + + + E N + + +E K + M K Q Sbjct: 85 DDVKPQDKPEAKAPAVAKAEAESNGKWWWPFGGKDQETAKAVPMPDPKVTQAWLDDYEPK 144 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS-SIPLPETIVVLQKIGEVLAH 261 L + D+ ++ + ++ F+ ++ LP T+ ++ ++L Sbjct: 145 LRTAIQDSKLQ------LERRDNVLVVTAPVDGSFNPDRPAMLLPVTLGPFTRVAKILEA 198 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + + I GH D A N +LS +RA S + SG+ DR+ + G Sbjct: 199 DPKTAVLILGHADT---SGAAPANLKLSQERAQSVAAIFRLSGLQRDRLM-LRGMGAVAP 254 Query: 321 KIASD--PMNSANRRIDILVED 340 + A+D + NRR+++LV Sbjct: 255 RAANDSVEGRALNRRVELLVTP 276 >gi|310819072|ref|YP_003951430.1| outer membrane domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309392144|gb|ADO69603.1| Outer membrane domain protein [Stigmatella aurantiaca DW4/3-1] Length = 480 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 10/109 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + SS P + +L ++ L+ + I I GH D + +SL RA + Sbjct: 364 FVRGSSEL-PGVVPLLDQVILQLSGFSAGGTIVIEGHADTE---GTDTSDMFMSLRRAQA 419 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILVED 340 + L+ GV ++ +I G H K A++ + NRR ++LV Sbjct: 420 VRRYLIDQGVPGTKV-RIRGLGSHWPVSSKPATEQEHQLNRRAEVLVLT 467 >gi|300896337|ref|ZP_07114879.1| outer membrane protein A [Escherichia coli MS 198-1] gi|300359748|gb|EFJ75618.1| outer membrane protein A [Escherichia coli MS 198-1] Length = 354 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|330448104|ref|ZP_08311752.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492295|dbj|GAA06249.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 352 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E L+ I + L + + + GHTD+ R N +LS +RA + Sbjct: 238 FAFDSDKLTAEDEARLEPIAQRLVNFPNAELVVIGHTDS---RGSEAYNQKLSEERAKTV 294 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 LMK + R+ K G ++D + NRR+D+ Sbjct: 295 ALYLMKHFNIDASRV-KGEGRGELDPVASNDTAEGRAQNRRVDV 337 >gi|115372572|ref|ZP_01459880.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|115370534|gb|EAU69461.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 490 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 10/109 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + SS P + +L ++ L+ + I I GH D + +SL RA + Sbjct: 374 FVRGSSEL-PGVVPLLDQVILQLSGFSAGGTIVIEGHADTE---GTDTSDMFMSLRRAQA 429 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILVED 340 + L+ GV ++ +I G H K A++ + NRR ++LV Sbjct: 430 VRRYLIDQGVPGTKV-RIRGLGSHWPVSSKPATEQEHQLNRRAEVLVLT 477 >gi|3915781|sp|P24017|OMPA_KLEPN RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II; Flags: Precursor gi|3201545|emb|CAA04450.1| outer membrane protein A [Klebsiella pneumoniae] Length = 344 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + A N +LS Sbjct: 216 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 272 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 273 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 331 Query: 338 VE 339 V+ Sbjct: 332 VK 333 >gi|300824154|ref|ZP_07104273.1| outer membrane protein A [Escherichia coli MS 119-7] gi|300925361|ref|ZP_07141248.1| outer membrane protein A [Escherichia coli MS 182-1] gi|301327213|ref|ZP_07220475.1| outer membrane protein A [Escherichia coli MS 78-1] gi|309795053|ref|ZP_07689473.1| outer membrane protein A [Escherichia coli MS 145-7] gi|300418528|gb|EFK01839.1| outer membrane protein A [Escherichia coli MS 182-1] gi|300523330|gb|EFK44399.1| outer membrane protein A [Escherichia coli MS 119-7] gi|300846194|gb|EFK73954.1| outer membrane protein A [Escherichia coli MS 78-1] gi|308121357|gb|EFO58619.1| outer membrane protein A [Escherichia coli MS 145-7] Length = 358 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|86137994|ref|ZP_01056570.1| OmpA family protein [Roseobacter sp. MED193] gi|85825586|gb|EAQ45785.1| OmpA family protein [Roseobacter sp. MED193] Length = 213 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + E VL + + + GHTDA N +L L RA SA Sbjct: 70 FAFNDARLDGEARAVLDRQAAWIKQFPEVRFRVYGHTDAV---GGNSYNKQLGLRRARSA 126 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ G+ R+ + + I + NRR Sbjct: 127 VNHLVSRGIDRRRLEAMVSKGESQPLILTQEPERRNRR 164 >gi|262278151|ref|ZP_06055936.1| peptidoglycan-associated lipoprotein [Acinetobacter calcoaceticus RUH2202] gi|262258502|gb|EEY77235.1| peptidoglycan-associated lipoprotein [Acinetobacter calcoaceticus RUH2202] Length = 190 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 82 FDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDE---RGTREYNMALGERRAKAV 138 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + A ++ NRR++I Sbjct: 139 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 180 >gi|255263704|ref|ZP_05343046.1| OmpA domain protein [Thalassiobium sp. R2A62] gi|255106039|gb|EET48713.1| OmpA domain protein [Thalassiobium sp. R2A62] Length = 632 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + +I E+L ++ I I G+TD+ N +LS RA + Sbjct: 499 FEPGSANIDAGARSTVDQIAEILQRCTSTKIEIAGYTDSQ---GREVMNQQLSQQRAEAV 555 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 L V + I G+ ++ + NRRI+ Sbjct: 556 LTALRARRVPTSAFTAI-GYGEESPIADNETEDGREANRRIE 596 >gi|158536383|gb|ABW72716.1| outer membrane protein A [Escherichia coli] Length = 354 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 226 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 283 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|149191257|ref|ZP_01869513.1| outer membrane protein [Vibrio shilonii AK1] gi|148834927|gb|EDL51908.1| outer membrane protein [Vibrio shilonii AK1] Length = 275 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 17/206 (8%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM-KRKKRLQDLAKKISSTL 203 +SL + + ++ N+ L + + ++K+L DL ++ L Sbjct: 69 DSLIEEGAQWCFPAAVLQAQEKQNRIARELEGGLWIDAANDIVIQRKKLNDLELRLDYVL 128 Query: 204 SGLVADNIVKGV----LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + +KG L + + + +D + F +S P+ + L + +L Sbjct: 129 NEATCAPPLKGKDFDDLMQVVKRVYQLLNVDNQ----FAYNSVEVNPKYMGHLAEAANIL 184 Query: 260 AHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +S+ GH DA+ N +++ RA + L G++ RI S Sbjct: 185 KQHPTIRLSVTGHADAT---GGTEYNEKIAKGRAQQVKRYLTIFGLAPGRIETHS-LGEE 240 Query: 319 RLKIASDPMNSA--NRRIDI-LVEDR 341 D NRR+ I ++ D+ Sbjct: 241 LPLYEGDSPGVRLTNRRVSIEVIADK 266 >gi|297183997|gb|ADI20117.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [uncultured alpha proteobacterium EB080_L06A09] Length = 613 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + V++ I +VL E I+GHTD+ N LS RA + Sbjct: 503 FEPGKVVLNDDNFTVIKLIADVLRTCPEAKFEIQGHTDS---SGSEELNQNLSQSRAEAV 559 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 L+ V IS G+ ++ NRRI+I + + Sbjct: 560 LFELLNRRVLTSGISA-KGYGSISPIADNKTEEGREINRRIEIKLVE 605 >gi|229528510|ref|ZP_04417901.1| protein F-related protein [Vibrio cholerae 12129(1)] gi|229334872|gb|EEO00358.1| protein F-related protein [Vibrio cholerae 12129(1)] Length = 204 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 99 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V ++ I GF + + N NRR++I Sbjct: 156 KAALVQSRVVQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 197 >gi|254482517|ref|ZP_05095756.1| peptidoglycan-associated lipoprotein, putative [marine gamma proteobacterium HTCC2148] gi|214037208|gb|EEB77876.1| peptidoglycan-associated lipoprotein, putative [marine gamma proteobacterium HTCC2148] Length = 174 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S P+ + L + + + + GHTD R N L RA + Sbjct: 76 FDYDSYNLNPDAVSALDAHISAMQGNEANVRLEGHTDE---RGTREYNMALGERRANAVR 132 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 ++ +GVS RI +S + R + + + NRR+++ Sbjct: 133 DYMVVNGVSSYRIETVS-YGEERPIAYGSGESNWAQNRRVEL 173 >gi|193885262|pdb|2ZF8|A Chain A, Crystal Structure Of Moty Length = 278 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 166 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 222 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 223 LRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 271 >gi|16759951|ref|NP_455568.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142277|ref|NP_805619.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|68052784|sp|Q8Z7S0|OMPA_SALTI RecName: Full=Outer membrane protein A; Flags: Precursor gi|25298549|pir||AI0626 outer membrane protein A STY1091 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502245|emb|CAD08196.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi] gi|29137907|gb|AAO69468.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 350 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|251792331|ref|YP_003007056.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700] gi|247533723|gb|ACS96969.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700] Length = 346 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 14/113 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ VL I +A I + G+TD + A N +LS RA + Sbjct: 233 FAFGKANLKPQAQSVLDGIYSEIAQVNNADIKVSGYTD--RIGSDAY-NQKLSQRRAETV 289 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA---------NRRIDILV 338 L+ GV+++ IS G A+ D + +RR++I V Sbjct: 290 ANYLVSKGVAQNAISAAGYGKANPVTGTKCDAVKGRKALIACLADDRRVEIAV 342 >gi|84684131|ref|ZP_01012033.1| OmpA domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84667884|gb|EAQ14352.1| OmpA domain protein [Rhodobacterales bacterium HTCC2654] Length = 315 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 9/109 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS T L + L +++ GHTDA N +S RA S Sbjct: 210 FETGSSALGDGTYDSLTDLAAYLKSHPTRRVALVGHTDAE---GPLSANIAISKRRATSV 266 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRID-ILVED 340 + L+ + GV ++ G + ++ D + NRR++ ILV Sbjct: 267 LERLVTAHGVPSSQLEA-EGIGYLSPLASNQSDEGRTFNRRVEAILVTT 314 >gi|186472558|ref|YP_001859900.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184194890|gb|ACC72854.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 207 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P++ V +Q++ VLA +++ GHTD + + D+ RLS+ RA + Sbjct: 106 LFDSAT-ELAPQSAVTVQQMKAVLATWPAPHLTVVGHTDLA--GSPEYDD-RLSMQRAQT 161 Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPM--NSANRRIDILVE 339 + L+K+G+ +I + G + + N NRR+ I ++ Sbjct: 162 VAKFLIKAGIPARQIETAARGK--REPLVHTADGVPNQMNRRVVITIQ 207 >gi|16764429|ref|NP_460044.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205352225|ref|YP_002226026.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856415|ref|YP_002243066.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20141670|sp|P02936|OMPA_SALTY RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane major heat-modifiable protein; AltName: Full=Outer membrane protein 33K; Flags: Precursor gi|16419585|gb|AAL20003.1| putative membrane component hydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|146760785|gb|ABQ44512.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium] gi|205272006|emb|CAR36850.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708218|emb|CAR32518.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246287|emb|CBG24095.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992822|gb|ACY87707.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157614|emb|CBW17106.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987964|gb|AEF06947.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 350 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|300902879|ref|ZP_07120825.1| outer membrane protein A [Escherichia coli MS 84-1] gi|301302427|ref|ZP_07208558.1| outer membrane protein A [Escherichia coli MS 124-1] gi|300405092|gb|EFJ88630.1| outer membrane protein A [Escherichia coli MS 84-1] gi|300842266|gb|EFK70026.1| outer membrane protein A [Escherichia coli MS 124-1] gi|315258005|gb|EFU37973.1| outer membrane protein A [Escherichia coli MS 85-1] Length = 358 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|212704357|ref|ZP_03312485.1| hypothetical protein DESPIG_02412 [Desulfovibrio piger ATCC 29098] gi|212672216|gb|EEB32699.1| hypothetical protein DESPIG_02412 [Desulfovibrio piger ATCC 29098] Length = 331 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + + +L + ++ I + G TD+ R N +LS +RA + Sbjct: 231 FAFDSYALDSKAMGILDEAAGLIKSKPNTKIVLTGWTDS---RGSDAYNAKLSKNRAEAV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L K GV R++ I + S+ NRR +I Sbjct: 288 KGYLAKQGVPASRMTAIGKGKSFKYSNDSEEGRYMNRRTEI 328 >gi|87121179|ref|ZP_01077070.1| OmpA family protein [Marinomonas sp. MED121] gi|86163671|gb|EAQ64945.1| OmpA family protein [Marinomonas sp. MED121] Length = 201 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + ++K+ + L + + I GHTD + N +LS RA + Sbjct: 79 LFVSNRFEVRRRYYSEVKKLADFLRKNPSSNVVIEGHTDNT---GHNHHNQQLSQQRAQA 135 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRI 334 +L+K+ +++ R+ I G+ R ++ + NRR+ Sbjct: 136 IANILIKTFSIAQSRVKAI-GYGETRPIASNLSAQGKAKNRRV 177 >gi|109898397|ref|YP_661652.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] gi|109700678|gb|ABG40598.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 366 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 10/105 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 MFD +SS +Q+ + + +T + I G+ ++P + N +LS++RA Sbjct: 254 MFDNNSSKLKNIDSASVQEFVDFMRRYGTTNAV-IEGY-ASAPGTDAY--NMKLSVERAQ 309 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335 + Q L+ ++ R+ + G+ +L +++ + NRRI+ Sbjct: 310 NVRQYLVAQYNIAGSRLEAV-GYGETKLLDSANTREAHQKNRRIE 353 >gi|300921002|ref|ZP_07137390.1| outer membrane protein A [Escherichia coli MS 115-1] gi|300412048|gb|EFJ95358.1| outer membrane protein A [Escherichia coli MS 115-1] Length = 358 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|316931816|ref|YP_004106798.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599530|gb|ADU42065.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 334 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291 FD S P+ LQ I + L + + I GHTDA DN LS R Sbjct: 208 FDTGSWDIPPDQAAKLQVIADGLNRAIQRNPREVFLIEGHTDAV---GNDTDNLSLSDRR 264 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA +L + GV + ++ G+ LK+ + NRR+ I Sbjct: 265 AESAAALLTQQFGVPAENLTS-QGYGEQYLKVNTQAAERQNRRVTI 309 >gi|212633286|ref|YP_002309811.1| OmpA protein [Shewanella piezotolerans WP3] gi|212554770|gb|ACJ27224.1| OmpA [Shewanella piezotolerans WP3] Length = 201 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 Q +F S P ++ I + I GH + N LS Sbjct: 73 QELKILFANDSYYIDPVYYTQVEIIATFMQKFPNTQAVIEGHCSKT---GTHEHNQELSQ 129 Query: 290 DRAYSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 +RA + +L + + R+S + G++ R + + NRR+ Sbjct: 130 NRANAVSALLSERFDIESSRLSAV-GYSFDRPIDPTHTAAAHKVNRRV 176 >gi|294140555|ref|YP_003556533.1| sodium-type flagellar protein MotY [Shewanella violacea DSS12] gi|293327024|dbj|BAJ01755.1| sodium-type flagellar protein MotY [Shewanella violacea DSS12] Length = 289 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ S + + K+ E LA+ +EV + I +TD+ R+I N ++S RA S Sbjct: 184 YESGGSELTRFSKSQIAKVQEYLAYDSEVELVLIDAYTDSYGGRSI---NQKVSEQRADS 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + +G+++DRI + G R ++ NRR+ I + Sbjct: 241 VKNFFLSAGINQDRIYTV-GHGERRHVASNATIDERGRNRRVVIRI 285 >gi|23015570|ref|ZP_00055342.1| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum magnetotacticum MS-1] Length = 161 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD S + L K L +++ GH D R N L R Sbjct: 56 DRVFFDFDKSSLRADAKATLDKQAAWLKAYPNYSLTVEGHADE---RGTREYNLALGEKR 112 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A S + L +GV+ R+ +S G +++ S NRR Sbjct: 113 ANSVAEYLKAAGVAAARVKTVSYGKERPVALGSNEAAWSQNRR 155 >gi|324113719|gb|EGC07694.1| OmpA transmembrane domain-containing protein [Escherichia fergusonii B253] gi|325496887|gb|EGC94746.1| outer membrane protein A [Escherichia fergusonii ECD227] Length = 359 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 231 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 287 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 288 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 346 Query: 338 VE 339 V+ Sbjct: 347 VK 348 >gi|310823157|ref|YP_003955515.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|309396229|gb|ADO73688.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 171 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 22/169 (13%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 +LA+ Q ++ + K + + T ++N F + Sbjct: 11 SLLAVPGMALAQSPVEQFKKAAGKASKSTLEKKINTKLTEDA-------RKNQCSFKTGT 63 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVI----------SIRGHTDASPFRNIARDNWRLSLDR 291 + L+ + L + + + + GHTD+ A N LS R Sbjct: 64 DVLEAGCDQKLKNLTAALVEAKKQLDAGGVKNYQFEVSGHTDS---SGDAAKNKALSEKR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 A + L+ G+ I + + L D + NRR +I V Sbjct: 121 AAVIVKELVSRGIPRAEILAVGRGSEQPLVKPDDTAAKKAKNRRYEIQV 169 >gi|303237447|ref|ZP_07324013.1| OmpA family protein [Prevotella disiens FB035-09AN] gi|302482397|gb|EFL45426.1| OmpA family protein [Prevotella disiens FB035-09AN] Length = 226 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 7/128 (5%) Query: 212 VKGVLFETTRT--GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 V+ E T+ G+ + + +F +SS + L VL + + ++I Sbjct: 86 VENAKVEKTKDANGLDCVKVTFDSGILFATNSSSLSAASKKDLNNFAGVLKQNRDCDVAI 145 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 +G+TDA N LS RA + L GV +I + G I + ++ Sbjct: 146 QGYTDA---SGNDNINLPLSEKRATAVSSYLRAQGVPAGQIRTVEGLGSANP-IENKRIS 201 Query: 329 SANRRIDI 336 ANRR+++ Sbjct: 202 QANRRVEV 209 >gi|259417580|ref|ZP_05741499.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259346486|gb|EEW58300.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 166 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE +L L + V++I GH D R N L R Sbjct: 56 DRVLFLVDQSSISPEAQGILDGQARWLTANPAYVVTIEGHADE---RGTREYNLALGARR 112 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333 A SA + L+ GV+ RI +S ++I S+ + NRR Sbjct: 113 ANSAREYLISQGVAASRIQTVSYGKERPIEICSEQSCYNKNRR 155 >gi|261365210|ref|ZP_05978093.1| OmpA family protein [Neisseria mucosa ATCC 25996] gi|288566472|gb|EFC88032.1| OmpA family protein [Neisseria mucosa ATCC 25996] Length = 253 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE L + + L + + + + GHTD F N LS RA Sbjct: 91 LFGFDKDNLRPEAQENLDALAQRLSNENVQTVRVEGHTD---FMGSEEYNQALSERRANV 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV ++S + G + Sbjct: 148 VANYLVGRGVPSSKVSAV-GLGESQ 171 >gi|152969543|ref|YP_001334652.1| outer membrane protein A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894012|ref|YP_002918746.1| outer membrane protein A [Klebsiella pneumoniae NTUH-K2044] gi|7442975|pir||JC6558 outer membrane protein A precursor - Klebsiella pneumoniae gi|150954392|gb|ABR76422.1| outer membrane protein 3a (II*;G;d) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546328|dbj|BAH62679.1| outer membrane protein A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 356 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + A N +LS Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 285 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 343 Query: 338 VE 339 V+ Sbjct: 344 VK 345 >gi|325926546|ref|ZP_08187862.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas perforans 91-118] gi|325543054|gb|EGD14501.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas perforans 91-118] Length = 400 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%) Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIA 281 G LI++ D +FD S P+ VL +G T + +RGHTDA + Sbjct: 283 GYLITLND---RILFDFDKSDIRPDAARVLDTLGAAQTKVTAKDMQVRGHTDA---KGSD 336 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSANRRI 334 N LS RA + + + G+ + + +P NRR+ Sbjct: 337 DYNQALSERRANAVLA--ALRARGAAQSANAKGYGESQPVAPNTLNGQDNPGGRQLNRRV 394 Query: 335 DILVED 340 +I + Sbjct: 395 EIFLRT 400 >gi|311694925|gb|ADP97798.1| peptidoglycan-associated lipoprotein [marine bacterium HP15] Length = 190 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ E VL LA++ + I GH D R N L RA + Sbjct: 89 FDFDTAEIKQEARDVLVAHARFLANNPGQNVRIEGHADE---RGTKEYNLALGERRANAV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 + L+ +G S ++ +S + + + +S+ + NRR++++ Sbjct: 146 QRFLIVNGASRGQLETVS-YGEEKPAVMGSSESAWAQNRRVELV 188 >gi|319427914|gb|ADV55988.1| OmpA/MotB domain protein [Shewanella putrefaciens 200] Length = 202 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ PE ++ I L ++I GHT + N LS +RA + Sbjct: 79 LFPNDSAFIAPEYYSQIEDIAAFLRQYPTTKVTIEGHTSRT---GTDERNAVLSQERADA 135 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 L + R++ I G+ R + + NRR+ Sbjct: 136 VTAALADRFNIERSRLTAI-GYGSSRPIVLEQTPEAEMRNRRV 177 >gi|77460739|ref|YP_350246.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77384742|gb|ABA76255.1| putative exported flagellar protein [Pseudomonas fluorescens Pf0-1] Length = 302 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F LQ + E + I + GH+D N LS RA + Sbjct: 178 FPGEGIELDAAAKAKLQVMLEYMKADPTVNHIELDGHSDN---SGNRLTNRELSRRRALA 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 +G+ E +I+ + + + + NRR+++ + Sbjct: 235 VVDFFKANGIQESQIT-VRFHGERYPLVPNTNAANRAKNRRVNVHL 279 >gi|86136231|ref|ZP_01054810.1| hypothetical protein MED193_18949 [Roseobacter sp. MED193] gi|85827105|gb|EAQ47301.1| hypothetical protein MED193_18949 [Roseobacter sp. MED193] Length = 367 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 45/356 (12%), Positives = 104/356 (29%), Gaps = 51/356 (14%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWII--NATDDDTKKAIEQYFNPFGK 74 +++ S + D + +++ +DD + Y Sbjct: 1 MRRLERNRTRAEEEESVFVTMTDMTISFLLIIMILLAFFATQLNDDESVPLTAY------ 54 Query: 75 NLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYL 134 + + +N R+S ++ + ++ + Q + N Sbjct: 55 ERVRQERDELRVENQDLRASVKALEAELARVTSELETVTAERDRLLSELDQLRDENEALR 114 Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + + E L ++ L + + + K + L L + + Sbjct: 115 ARVAELEEENEHLRSRIDQ---LVEEIERLREEIKRLRDKIERLQVVNPLEAYLSQAIDQ 171 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + + L+ + V+ + + +F S +++ Sbjct: 172 RREILVELRDRLLIEFPELQVVISPEQDALRFQ-----GEGLFRSGSPQLERRQRAIVET 226 Query: 255 IGEVL----------------------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +G +L E + I GHTD+ R DN LS RA Sbjct: 227 MGRLLDEILVCFTLGERAERGPDCESGNALIEAVQIEGHTDSDRGRI---DNVTLSTRRA 283 Query: 293 Y----SAYQ----VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 + + +L + + + +SG+ R ++ +ANRRID+ + Sbjct: 284 NETFFAIREEVAGILAHRNLRDQPVMSVSGYGEMRPIETNETTEGKAANRRIDLRI 339 >gi|93006335|ref|YP_580772.1| OmpA/MotB [Psychrobacter cryohalolentis K5] gi|92394013|gb|ABE75288.1| OmpA/MotB [Psychrobacter cryohalolentis K5] Length = 172 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS ++ VL + +L + + I GHTD R N L RA +A Sbjct: 72 FAFDSSAITSQSAGVLNQHAGLLKSNPNAGVVIAGHTDE---RGSREYNIALGERRAQAA 128 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 L GV+ + I ++ + R A ++ + NRR ++ Sbjct: 129 RDYLAAQGVAANNI-RVISYGEERPAAAGTNEDAYAQNRRAEL 170 >gi|218709511|ref|YP_002417132.1| outer membrane protein [Vibrio splendidus LGP32] gi|218322530|emb|CAV18689.1| Outer membrane protein [Vibrio splendidus LGP32] Length = 278 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 19/211 (9%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + ++I K+ + A ++KRL +L + Sbjct: 67 AKLHLDALVQEGARWCFPAAVVQAIEKQNRIARELQGGLLLDAANDLVIQRKRLNELEVQ 126 Query: 199 ISSTLSG----LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 + S + + + +D + F ++S+ P+ + L + Sbjct: 127 LDYVTSQARCEPPKNENQFRMQLSVIEQLYDLLNVDNQ----FAENSTEVNPKYMGRLAE 182 Query: 255 IGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 +L + + + + GH DA+ N L+L RA + L G+ RI +S Sbjct: 183 ATTLLKENKSLDLVVTGHADAT---GTEEYNDDLALGRAKQVERYLTIFGLGVQRIKAVS 239 Query: 314 GFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342 SD NRR+ I V + Sbjct: 240 -VGETVPLFEGESDGTRLTNRRVSIEVISPK 269 >gi|114562634|ref|YP_750147.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333927|gb|ABI71309.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 289 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 + + + LQKI L+ EV + I +TD+ R++ N ++S RA S Sbjct: 184 YQEGGVELTRFSSQQLQKIQRYLSFDPEVELVLIDAYTDSYGGRSV---NQKVSDKRADS 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 +L+ SG+ +DRI SG R +D NRR+ I + Sbjct: 241 VKDILIASGIPKDRIH-TSGHGEKRHVTGNDLAEERKMNRRVVIKI 285 >gi|144898281|emb|CAM75145.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum gryphiswaldense MSR-1] Length = 300 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + LPE ++ + + A +I + G+TD N +LS R + Sbjct: 196 FFDFDKADLLPEARGIIASALKAITAEPQGMIKVTGYTDT---SGTPSYNDKLSARRGNA 252 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 Q L+ G++ DRI + L + NRR I + + Sbjct: 253 VEQALLHGGIAADRI-SVDSRGESDLFVQTPDGVREPQNRRATIELMGK 300 >gi|163751264|ref|ZP_02158492.1| sodium-type flagellar protein MotY [Shewanella benthica KT99] gi|161328978|gb|EDQ00052.1| sodium-type flagellar protein MotY [Shewanella benthica KT99] Length = 277 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ S + + K+ E LA+ +E+ + I +TD+ R+I N R+S RA S Sbjct: 172 YESGGSELTRFSKSQIAKVQEYLAYDSEIELVLIDAYTDSYGGRSI---NQRVSEQRADS 228 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILV 338 + +G+++DRI + G R ++ NRR+ I + Sbjct: 229 VKNFFLSAGINQDRIHTV-GHGERRHVASNASIDERGRNRRVVIRI 273 >gi|156934557|ref|YP_001438473.1| outer membrane protein A [Cronobacter sakazakii ATCC BAA-894] gi|156532811|gb|ABU77637.1| hypothetical protein ESA_02391 [Cronobacter sakazakii ATCC BAA-894] Length = 358 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIECLGPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|89072281|ref|ZP_01158860.1| putative sodium-type flagellar protein MotY precursor [Photobacterium sp. SKA34] gi|89051813|gb|EAR57265.1| putative sodium-type flagellar protein MotY precursor [Photobacterium sp. SKA34] Length = 250 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%) Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286 D R+ + F + +L + L + + I GHTD N + Sbjct: 129 DARDVVLQFRLGQRVVSSSQNEILADLASYLKYDKNVKRVLIDGHTDNV---GSNVTNLQ 185 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 +S RA +L ++GV + +I ++ + + NRR+ I Sbjct: 186 ISKVRADDVASILRENGVRSS-LMEIRSHGSRYPVANNNTQDGKAKNRRVTI 236 >gi|291451540|ref|ZP_06590930.1| secreted protein [Streptomyces albus J1074] gi|291354489|gb|EFE81391.1| secreted protein [Streptomyces albus J1074] Length = 220 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 19/187 (10%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAK----KISSTLSGLVADNIV 212 + + D + PP + A + +LA I S + L + Sbjct: 26 VAHADDDDPVAPPGSTTSSPPPEISEDSAGLKLADGAELAPPKVLDIKSVVEDLGGEERR 85 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGH 271 + + + +F K S+ PE +Q I E A + + G Sbjct: 86 EDTNTDVK--------FALQAEVLFGKDSAKLNPEARGRIQAIAEEAQAQQANKVRVFGF 137 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA- 330 TD +LS +RA + ++ L+K+ + + ++ G++ + Sbjct: 138 TDDL---GSYEHGKKLSKNRADAVHEELVKT-LGPNVTYEVRGYSEDYPIADNSTEAGRM 193 Query: 331 -NRRIDI 336 NRR+++ Sbjct: 194 KNRRVEV 200 >gi|56413933|ref|YP_151008.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362856|ref|YP_002142493.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128190|gb|AAV77696.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094333|emb|CAR59845.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 350 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|116693955|ref|YP_839488.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|116651955|gb|ABK12595.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 103 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 244 PLPETIVVLQKIGEVLAH-STE-VISIRGHTDASPFRNIAR-DNWRLSLDRAYSAYQVLM 300 P ++ IG +A + + G+TD P I+R +N LS RA ++ Sbjct: 3 VEPWWASMMATIGRTIAASVPGAYVQVVGYTDNVPAGAISRGNNQALSEARAREVARIFA 62 Query: 301 KSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 +GV IS +G + P S NRR+++ V + Sbjct: 63 AAGVPMQNISA-TGQGDADPLADNGTAPGRSRNRRVEVTVSN 103 >gi|228018149|gb|ACP52753.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018157|gb|ACP52757.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018163|gb|ACP52760.1| fibronectin-binding protein [Campylobacter jejuni] Length = 211 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 123 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 179 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 L K GV + RI + G+ + ++D Sbjct: 180 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDT 209 >gi|283853608|ref|ZP_06370844.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] gi|283570999|gb|EFC19023.1| OmpA/MotB domain protein [Desulfovibrio sp. FW1012B] Length = 345 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE + VL++ ++ T + + GHTD+ + N +L RA S Sbjct: 242 FDFDKYNIKPEFVPVLEEGTAIIKSKTGMKVVLEGHTDSV---GSDQYNMKLGQRRADSV 298 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 +K G+ RI IS G + + + NRR I Sbjct: 299 KAFFVKKGIDASRIETISFGESDPVATNKTAQGRALNRRCVI 340 >gi|254496705|ref|ZP_05109568.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254354133|gb|EET12805.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 293 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E L++I + +A +VI + G+ D S +N +S DRA Sbjct: 189 FGPDSRELTDEDKAQLRRIAQYVAADMQIKVIRVVGYADES--GRKGYNN-AISQDRAQV 245 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L+ GV E+++ ++ F + +D + NRR+ I + + Sbjct: 246 VQNYLITLGVPEEQL-SVTWFGALKPVARNDTDAGRALNRRVVISLIKK 293 >gi|329118055|ref|ZP_08246768.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465943|gb|EGF12215.1| OmpA family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 248 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F P+ I L + L + + + + GHTD F + N LS RA Sbjct: 90 LFGFDKDNLRPQAIDTLNDLAGRLSNENVQAVRVEGHTD---FMGSEQYNQALSERRANV 146 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV +IS + G + Sbjct: 147 VANYLVNQGVPAGKISAV-GLGESQ 170 >gi|320577122|gb|ADW54070.1| outer membrane protein A [Sodalis glossinidius] Length = 358 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + PE L ++ L+ + + G+TD N +LS Sbjct: 230 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 +RA S L+ G+ D+IS G + + + +RR++I Sbjct: 287 QERAQSVVSYLVSKGIPSDKISA-RGMGKSNPVTGNTCNSVKGRAAVISCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|85059008|ref|YP_454710.1| outer membrane protein A [Sodalis glossinidius str. 'morsitans'] gi|84779528|dbj|BAE74305.1| outer membrane protein A precursor [Sodalis glossinidius str. 'morsitans'] Length = 356 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + PE L ++ L+ + + G+TD N +LS Sbjct: 228 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 +RA S L+ G+ D+IS G + + + +RR++I Sbjct: 285 QERAQSVVSYLVSKGIPSDKISA-RGMGKSNPVTGNTCNSVKGRAAVISCLAPDRRVEIE 343 Query: 338 VE 339 V+ Sbjct: 344 VK 345 >gi|332967831|gb|EGK06930.1| OmpA family protein [Kingella kingae ATCC 23330] Length = 227 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE + L ++ V + + + + GHTD F + N LS RA + Sbjct: 93 LFGFDKDKLRPEAVETLNQLVARVNGTNVQAVRVEGHTD---FMGAEQYNQALSERRATA 149 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK 321 L+ GV +R+S + G + + Sbjct: 150 VANYLVSQGVPAERVSAV-GLGESQAR 175 >gi|221200412|ref|ZP_03573454.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] gi|221206092|ref|ZP_03579106.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221174104|gb|EEE06537.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2] gi|221179753|gb|EEE12158.1| OmpA/MotB domain protein [Burkholderia multivorans CGD2M] Length = 159 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 12/134 (8%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 +K F+ T G +FD P+ ++++IG L + + + + G Sbjct: 34 LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 90 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD A D LS RA L+ G+ RI I G H + + M Sbjct: 91 YTDDE--GTDAYDM-ELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 145 Query: 328 NSANRRIDILVEDR 341 + NRR I+V R Sbjct: 146 RAQNRRAAIVVSPR 159 >gi|224371626|ref|YP_002605790.1| putative chemotaxis protein [Desulfobacterium autotrophicum HRM2] gi|223694343|gb|ACN17626.1| putative chemotaxis protein [Desulfobacterium autotrophicum HRM2] Length = 310 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 194 DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQ 253 DL K++++ ++ + I V +G+ + + + +F S + L+ Sbjct: 168 DLEKELTTKINAM---GIRDWVELANNNSGLRLEV---QLPILFAPGRSTIIGSYEGFLE 221 Query: 254 KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISK 311 KI ++ + + G TD + ++ N L RA + L+K G+ +I+ Sbjct: 222 KIATLVKPYEVFVHVNGVTDGA--KSKKISNIDLGARRATAIVNRLVKYGLPPSIFKITS 279 Query: 312 ISGFAHHRLKIASDPMNSANRRIDILV 338 ++ + P S NRR +I V Sbjct: 280 RGEYSEGSHMKVNSP--SLNRRAEITV 304 >gi|313204438|ref|YP_004043095.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312443754|gb|ADQ80110.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 743 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 33/158 (20%) Query: 209 DNIVKGVLFETTRTGILISI--IDQRNTPMF----DKSSS-------------IPLPETI 249 D + + +F + GILI D + +F ++ P Sbjct: 543 DTVFQNTVFNESSHGILIRNCTNDTPGSELFLNKLSLGTAWQMDTIYYDFDKWDIQPVAY 602 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L I +L T + I +TD + + W LS RA + +++ GV R Sbjct: 603 SMLDSIVSLLKSYTMMHVEIASYTDKR--GTVEYNLW-LSQQRANAVVNYIVRQGVDAGR 659 Query: 309 ISKISGFAHHRLKIASDPM--------NSANRRIDILV 338 I G+ +RL + DP + NRR +I V Sbjct: 660 IKA-RGYGKNRLIVG-DPSDISDREKIDQINRRSEIKV 695 >gi|213161917|ref|ZP_03347627.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425902|ref|ZP_03358652.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213622699|ref|ZP_03375482.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289826790|ref|ZP_06545725.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 369 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 241 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356 Query: 338 VE 339 V+ Sbjct: 357 VK 358 >gi|195940407|ref|ZP_03085789.1| outer membrane protein A [Escherichia coli O157:H7 str. EC4024] Length = 267 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 139 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 195 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 196 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 254 Query: 338 VE 339 V+ Sbjct: 255 VK 256 >gi|146983|gb|AAA24232.1| outer membrane protein II [Escherichia fergusonii] Length = 243 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 124 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 180 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 181 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 239 Query: 338 VE 339 V+ Sbjct: 240 VK 241 >gi|56475929|ref|YP_157518.1| outer membrane protein [Aromatoleum aromaticum EbN1] gi|56311972|emb|CAI06617.1| Bacterial outer membrane protein [Aromatoleum aromaticum EbN1] Length = 238 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 16/115 (13%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE L ++ E + + GHTD N +LS RA + Sbjct: 124 LFDFDKAVLKPEGRSKLDQLAEQAKSVKLEVILAVGHTDRL---GSDVYNQKLSERRANA 180 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMNSA--------NRRIDILV 338 L+ GV +RI G + + D + +RR+++ V Sbjct: 181 VKTYLVGKGVEANRIY-TEGKGERQPVTGTTCSDKLGRKALIECLQPDRRVEVEV 234 >gi|228018139|gb|ACP52748.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018141|gb|ACP52749.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018143|gb|ACP52750.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018145|gb|ACP52751.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018147|gb|ACP52752.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018151|gb|ACP52754.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018153|gb|ACP52755.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018155|gb|ACP52756.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018159|gb|ACP52758.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018161|gb|ACP52759.1| fibronectin-binding protein [Campylobacter jejuni] gi|228018165|gb|ACP52761.1| fibronectin-binding protein [Campylobacter jejuni] Length = 211 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 123 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 179 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 L K GV + RI + G+ + ++D Sbjct: 180 ANELEKYGVEKSRIKTV-GYGQDNPRSSNDT 209 >gi|168243859|ref|ZP_02668791.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|198244081|ref|YP_002215003.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938597|gb|ACH75930.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205337186|gb|EDZ23950.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|312912061|dbj|BAJ36035.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129338|gb|ADX16768.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627270|gb|EGE33613.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 369 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 241 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356 Query: 338 VE 339 V+ Sbjct: 357 VK 358 >gi|229485743|sp|P0C8Z2|OMPA_ESCFE RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II gi|146991|gb|AAA24236.1| outer membrane protein II [Escherichia fergusonii] gi|146999|gb|AAA24240.1| outer membrane protein II [Escherichia fergusonii] Length = 243 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 124 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 180 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 181 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 239 Query: 338 VE 339 V+ Sbjct: 240 VK 241 >gi|91216576|ref|ZP_01253542.1| OmpA family protein [Psychroflexus torquis ATCC 700755] gi|91185370|gb|EAS71747.1| OmpA family protein [Psychroflexus torquis ATCC 700755] Length = 759 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 13/112 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P+ V LQKI + I +R HTD+ R N LS RA + Sbjct: 547 FDLDKFQIRPDAEVELQKIIVAMKSYPNLRIDVRSHTDS---RAGDEYNQILSNKRAKAT 603 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 ++ KSG+S +RIS G+ +L S+ ++ NRR + ++ Sbjct: 604 INYIIEKSGISSERISG-RGYGESQLVNKCSNGIDCSESEHALNRRAEFIIL 654 >gi|37704616|gb|AAR01580.1| OprF [Pseudomonas sp. MFY63] Length = 297 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 214 FDFDKSVVKPNSYADIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 270 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKI 322 QVL GV R+ + G+ R Sbjct: 271 KQVLTSQYGVESSRVQSV-GYGESRPVA 297 >gi|300937693|ref|ZP_07152496.1| outer membrane protein A [Escherichia coli MS 21-1] gi|301023085|ref|ZP_07186892.1| outer membrane protein A [Escherichia coli MS 69-1] gi|300397206|gb|EFJ80744.1| outer membrane protein A [Escherichia coli MS 69-1] gi|300457294|gb|EFK20787.1| outer membrane protein A [Escherichia coli MS 21-1] Length = 358 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + A N LS Sbjct: 230 KSDVLFTFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|256026544|ref|ZP_05440378.1| Outer membrane porin F [Fusobacterium sp. D11] Length = 391 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + I GHTD+ + N Sbjct: 286 LITLDSGILFDVDKYDVRPEAEEVLKNLAIVLKEADIKAFEIDGHTDSDA---GDKHNQI 342 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 LS +RA + L G++ + I G+ R ++D Sbjct: 343 LSENRANAVKNFLTSQGITAE--ITIKGYGKTRPIASNDT 380 >gi|189353654|ref|YP_001949281.1| putative OmpA family transmembrane protein [Burkholderia multivorans ATCC 17616] gi|189337676|dbj|BAG46745.1| putative OmpA family transmembrane protein [Burkholderia multivorans ATCC 17616] Length = 171 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRG 270 +K F+ T G +FD P+ ++++IG L + + + + G Sbjct: 46 LKSAGFKETEQGFE---FGAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYG 102 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--- 327 +TD D LS RA L+ G+ RI I G H + + M Sbjct: 103 YTDDE--GTDGYD-LELSRRRAEVVAIELVDVGLDARRI-AIVGRGKHDP-VGDNRMPVG 157 Query: 328 NSANRRIDILVEDR 341 + NRR I+V R Sbjct: 158 RAQNRRAAIVVSPR 171 >gi|163800953|ref|ZP_02194853.1| hypothetical protein 1103602000593_AND4_01783 [Vibrio sp. AND4] gi|159175302|gb|EDP60099.1| hypothetical protein AND4_01783 [Vibrio sp. AND4] Length = 252 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 17/210 (8%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 37 TKLHLDALIQEGARWCFPAAVVQALQKQNRIARELEGGLMLDAANDIVIQRRRLNLLEQQ 96 Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILI--SIIDQRN-TPMFDKSSSIPLPETIVVLQKI 255 + LS E R + I +I D N F S+ P+ + L + Sbjct: 97 LDYVLSQTTCKPPQD---IEAFRNDLSIVANIYDLLNVDNQFAIDSAEINPKYMGHLAEA 153 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +L + + GH DA+ N +L+ +RA + L G++ DR+ + Sbjct: 154 AYILRDHPYLSLVVTGHADAT---GTPEYNSQLAQNRAEQVKRYLTVFGITSDRV-QTKS 209 Query: 315 FAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 NRR+ I V Q Sbjct: 210 VGESLPLYEGQTPGVRLTNRRVSIEVLSGQ 239 >gi|269102083|ref|ZP_06154780.1| outer membrane protein A precursor [Photobacterium damselae subsp. damselae CIP 102761] gi|268161981|gb|EEZ40477.1| outer membrane protein A precursor [Photobacterium damselae subsp. damselae CIP 102761] Length = 317 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L + L A I + G+TD+ R N +LS+ RA + Sbjct: 200 FAFDSTELSAGDRAKLAPFEQRLQAQDAAQIYVVGYTDS---RGSEAYNQKLSVKRADAV 256 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 + L V RI G ++D + NRR++I+ Sbjct: 257 AEALRSVMNVDGSRIIA-EGRGESNPVASNDTAEGRAQNRRVEII 300 >gi|161614736|ref|YP_001588701.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168821824|ref|ZP_02833824.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|238911107|ref|ZP_04654944.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364100|gb|ABX67868.1| hypothetical protein SPAB_02488 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205341689|gb|EDZ28453.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085284|emb|CBY95068.1| Outer membrane protein A Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 369 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 241 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 297 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 298 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 356 Query: 338 VE 339 V+ Sbjct: 357 VK 358 >gi|319406244|emb|CBI79881.1| Outer membrane lipoprotein omp16 [Bartonella sp. AR 15-3] Length = 168 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS + +L + E L I+I GH D R N L R Sbjct: 58 DRIFFSLDSSSIESDAEYILARQAEWLLRYPHYFITIEGHADE---RGTREYNLALGQRR 114 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 A + L+ GVS R++ +S + R D ++ + NRR ++V + Sbjct: 115 AVAVRDYLISLGVSSQRMNTVS-YGKERPVAICDNISCWNQNRRAVLVVNN 164 >gi|325123093|gb|ADY82616.1| peptidoglycan-associated lipoprotein precursor [Acinetobacter calcoaceticus PHEA-2] Length = 186 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 78 FDYDSSDLSTEDYQTLQAHAQFLIANANSKVALTGHTDE---RGTREYNMALGERRAKAV 134 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + A ++ NRR++I Sbjct: 135 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 176 >gi|302062033|ref|ZP_07253574.1| ompA family protein [Pseudomonas syringae pv. tomato K40] Length = 380 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 15/274 (5%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 ++ A+ G + + SS D + K +T ++ Sbjct: 23 QSDSAATGGHWWQFGSGSESSDAGTDAKAPAPAPAPAPVAKAAATPAAAAGAESSGPWYW 82 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE---KILAMKRKK 190 S + K K + + + + + ++ K L M K Sbjct: 83 PFGSNDNAQAKPDAVASKPADKPAAPAMVAKSETDTKWWWPFGAEGQKDEPKALPMPDPK 142 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 Q + L + D+ F+ R L++I ++ ++ LP T+ Sbjct: 143 VTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTLG 197 Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + ++ +V+ + I GH D N ++S +RA S + SG+ +R+ Sbjct: 198 PITRLAKVVEGDQKTAVLILGHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRL 254 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 S+ G + A+D + NRR++IL+ + Sbjct: 255 SQ-RGMGAVMPRAANDSLEGRALNRRVEILMTPQ 287 >gi|153840578|ref|ZP_01993245.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus AQ3810] gi|149745760|gb|EDM56890.1| sodium-type flagellar protein MotY [Vibrio parahaemolyticus AQ3810] Length = 245 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 139 YERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSESQS---LSERRAES 195 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 196 LRTYFESLGLPEDRI-QVQGYGKRRPIADNGTPIGKDKNRRVVISLGRTQ 244 >gi|157164388|ref|YP_001467102.1| putative chemotaxis protein MotB [Campylobacter concisus 13826] gi|112801393|gb|EAT98737.1| putative chemotaxis protein MotB [Campylobacter concisus 13826] Length = 363 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 109/337 (32%), Gaps = 42/337 (12%) Query: 33 WKIVYADFMTVLMAFFLVM---------WIINATDDDTKKAIEQY--FNPFGKNLMTASK 81 W + YAD M L+ F+++ N ++ + I T + Sbjct: 14 W-VSYADLMAGLLFVFMLLIGAVVVKYVLTQNTLENKEQAIIAALANLKDAQGKNFTLEE 72 Query: 82 GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSE 141 ++ + S I+L I +D Q + N N+ + Sbjct: 73 LNDALKSELSKISDENINLKKSNEIFIIQIDALKEKLAQLINENKDANASIKELNASIFD 132 Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK--- 198 + + + E +D S K L + + + L+DL Sbjct: 133 LNQKMIVLNDEISSKDRALSDANASGEKNLAKIAFLLEQVSKKEARYDELLRDLNVTRDR 192 Query: 199 ------ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 I + + D + + + + +S ++ +FDK S++ E L Sbjct: 193 VKNLTGIRVKVISALKDRLGNSIEIDPNSGALKLS-----SSVLFDKGSAVLKEEVKEEL 247 Query: 253 QKIG----------EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + + +A + + I I G TD+ N LS RAY+ + + Sbjct: 248 KATLSKYFDVLLNDKEIASNIDQIVIEGFTDS---DGSYIYNLELSQKRAYAVMEFINSF 304 Query: 303 GVSE--DRISKISGFAHHRLKIASDPMN-SANRRIDI 336 ++ SG +++ L + A+RRI+I Sbjct: 305 SDDARLRKLLVASGRSYNELVFKDGAEDKDASRRIEI 341 >gi|28871259|ref|NP_793878.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854509|gb|AAO57573.1| ompA family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 381 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 15/274 (5%) Query: 74 KNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 ++ A+ G + + SS D + K +T ++ Sbjct: 23 QSDSAATGGHWWQFGSGSESSDAGTDAKAPAPAPAPAPVAKAAATPAAAAGAESSGPWYW 82 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE---KILAMKRKK 190 S + K K + + + + + ++ K L M K Sbjct: 83 PFGSNDNAQAKPDAVASKPADKPAAPAMVAKSETDTKWWWPFGAEGQKDEPKALPMPDPK 142 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 Q + L + D+ F+ R L++I ++ ++ LP T+ Sbjct: 143 VTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTLG 197 Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + ++ +V+ + I GH D N ++S +RA S + SG+ +R+ Sbjct: 198 PITRLAKVVEGDQKTAVLILGHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRL 254 Query: 310 SKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 S+ G + A+D + NRR++IL+ + Sbjct: 255 SQ-RGMGAVMPRAANDSLEGRALNRRVEILMTPQ 287 >gi|119472858|ref|ZP_01614765.1| putative Component of sodium-driven polar flagellar motor [Alteromonadales bacterium TW-7] gi|119444690|gb|EAW25997.1| putative Component of sodium-driven polar flagellar motor [Alteromonadales bacterium TW-7] Length = 292 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283 S D T M + +SS + L KI E L + + E ISI +TD+ + Sbjct: 177 SFEDISFTVMNYQSNSSKLTKSSQQRLDKIAEYLKNDSTIESISIDSYTDSY---GGRWN 233 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N LS RA + ++ GV E+++ K +GF R +D NRR+ I + Sbjct: 234 NLDLSRKRAKAIKDYMVSLGVDENKV-KTTGFGEKRFVDTNDNILGRDKNRRLVIQI 289 >gi|323495647|ref|ZP_08100718.1| outer membrane protein [Vibrio sinaloensis DSM 21326] gi|323319282|gb|EGA72222.1| outer membrane protein [Vibrio sinaloensis DSM 21326] Length = 211 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ S ++ VL ++ ++ I + GHTD + N+ L L R+ Sbjct: 108 RVYFNFDDSTLTQQSEYVLTRVMRLIESQARNIELAGHTDN--VGDAGY-NFSLGLRRSK 164 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 + L++ GV RI+ + F ++ + + D NRR+++ Sbjct: 165 AVEDYLVERGVDTKRIT-TTSFGENKPFVDNMSDENRKLNRRVEV 208 >gi|262368608|ref|ZP_06061937.1| peptidoglycan-associated lipoprotein [Acinetobacter johnsonii SH046] gi|262316286|gb|EEY97324.1| peptidoglycan-associated lipoprotein [Acinetobacter johnsonii SH046] Length = 189 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS + LQ + L + +++ GHTD R N L RA + Sbjct: 81 FDYDSSDLSNDDYQTLQAHAQFLMANANSRVALTGHTDE---RGTREYNMALGERRAKAV 137 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GVS +++ +S + A N+ NRR++I Sbjct: 138 ESFLITTGVSPNQLEAVS-YGKEMPINAGHDENAWKENRRVEI 179 >gi|224369398|ref|YP_002603562.1| ExeA2 [Desulfobacterium autotrophicum HRM2] gi|223692115|gb|ACN15398.1| ExeA2 [Desulfobacterium autotrophicum HRM2] Length = 555 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 42/253 (16%) Query: 91 ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRD 150 + ID SI + T+ Q N S + Sbjct: 343 TGTKAGAIDHSIAQPATELDATSITRPVPQPIVQDNDILNFDLASQGEDEPVAHAQTDPS 402 Query: 151 SEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADN 210 E+ DL T E ++ E + +PPLS +LQ L +K+ D Sbjct: 403 LEQATDLFARTSPEPTV---EQFLIPPLSNLSEPGFTPSTQLQPLERKVVVRFGYNNND- 458 Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG 270 T + + + G ++AH +S++G Sbjct: 459 --------FTDQAL------------------------KDLTKFAGSLVAHPGAKVSVKG 486 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 +TDA+ N +LS RA L+ G D+I K G +D Sbjct: 487 YTDAN---GNQTYNIKLSEFRANIVKSFLLGRGARLDQI-KTQGMGSENPIATNDTAQGR 542 Query: 331 --NRRIDILVEDR 341 NRR++I V + Sbjct: 543 MMNRRVEIEVISK 555 >gi|124004158|ref|ZP_01689004.1| immunogenic 75 kDa protein PG4 [Microscilla marina ATCC 23134] gi|123990228|gb|EAY29727.1| immunogenic 75 kDa protein PG4 [Microscilla marina ATCC 23134] Length = 660 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 9/109 (8%) Query: 236 MFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRG-HTDASPFRNIARDNWRLSLDRAY 293 +D + P+ L + + L ++ ++I G HTDA R ++N LS RA Sbjct: 551 FYDFARWEIRPDAAKELDERVLTFLKNNPKLIVELGSHTDA---RGTDQNNLILSQKRAK 607 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMNSANRRIDILVE 339 SA L+ G+ DRI G+ LKI ++ + ANRR + V Sbjct: 608 SAVDYLISKGIDPDRIKA-KGYGETDLKIKEAKTEEEHQANRRTTVKVL 655 >gi|158337857|ref|YP_001519033.1| outer membrane protein A [Acaryochloris marina MBIC11017] gi|158308098|gb|ABW29715.1| outer membrane protein A, putative [Acaryochloris marina MBIC11017] Length = 513 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 86/247 (34%), Gaps = 10/247 (4%) Query: 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLC 158 D I + + K G+ + + + F+ + +L + E + Sbjct: 269 DQLIRDSSALSQQIGKDGNLSTQDATSVSKGIDFFTALESHQWMNAGTLAKRIEATSAVL 328 Query: 159 KSTDLEKSI--NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 T + N Y +++ + + + +++ L G + V Sbjct: 329 SLTGETAGLVQNPRALYTQDFIAQAVTNSEQLVASIAATDPELAKVLRGQKSSTTKAQVT 388 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTD 273 + ++ + R F S++ ++ L+ + + + ST +++ GHT Sbjct: 389 PQQIQSAPQVGNFKVRGEVKFATGSAVLSGDSQSTLKALAQEINEFNPSTIAVNVVGHTS 448 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + A N LS RA L GV + +++ GF+ + DP + A +R Sbjct: 449 KT---GSAATNQTLSQQRAQVVANFLRSQGVRPNLVAEGKGFSAQLPGV--DPASPAQQR 503 Query: 334 IDILVED 340 +I + Sbjct: 504 TEIQLRR 510 >gi|37704622|gb|AAR01583.1| OprF [Pseudomonas sp. MFY69] Length = 318 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 235 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 291 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 292 KQVLTQQYGVESSRVDSV-GYGETRPVA 318 >gi|37704610|gb|AAR01577.1| OprF [Pseudomonas sp. MFY57] Length = 316 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTQQYGVESSRVDSV-GYGETRPVA 316 >gi|293609865|ref|ZP_06692167.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828317|gb|EFF86680.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 188 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 80 FDYDSSDLSTEDYQTLQAHAQFLIANANSKVALTGHTDE---RGTREYNMALGERRAKAV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + A ++ NRR++I Sbjct: 137 QSYLITNGVNPQQLEAVS-YGKEAPVNAGHDESAWKENRRVEI 178 >gi|239908944|ref|YP_002955686.1| putative outer membrane protein [Desulfovibrio magneticus RS-1] gi|239798811|dbj|BAH77800.1| putative outer membrane protein [Desulfovibrio magneticus RS-1] Length = 345 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE + VL++ ++ T + + GHTD+ N +L RA S Sbjct: 242 FDFDKYNIKPEFVPVLEEGTAIIKSKTGMKVILEGHTDS--IGTEQY-NMKLGQRRADSV 298 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 +K G+ RI IS G + + + NRR I Sbjct: 299 KAFFVKKGIDASRIETISFGESDPVATNKTAQGRALNRRCVI 340 >gi|298717317|ref|YP_003729959.1| OmpA-family outer membrane protein YfiB [Pantoea vagans C9-1] gi|298361506|gb|ADI78287.1| Putative OmpA-family outer membrane protein precursor yfiB [Pantoea vagans C9-1] Length = 157 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F + S P + + +Q + + LA + + + I GHTD N +LSL R Sbjct: 49 DKILFGVNESELTPSSKLTIQGMAKNLASTGIKHVRIDGHTDNY---GKPDYNQQLSLKR 105 Query: 292 AYSAY-QVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338 A + Q + + + I + G + S + NRR+ I++ Sbjct: 106 ANAVAAQWAEGAAIPRENIVTRGLGMSSPVASNNSAQGRAQNRRVAIVI 154 >gi|120555415|ref|YP_959766.1| OmpA/MotB domain-containing protein [Marinobacter aquaeolei VT8] gi|120325264|gb|ABM19579.1| OmpA/MotB domain protein [Marinobacter aquaeolei VT8] Length = 309 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ + +L I + + E I + GH+D+ DN LS +RA Sbjct: 192 FASGSTSLSQADMNLLDNIVTYVMADSTVERIFVDGHSDSI---GSRIDNRALSEERANV 248 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 + L G+ E + + ++ P + NRR I ++ RQG Sbjct: 249 VAEYLKSRGIDET-MLTVRAHGDQYP-VSRRPAD--NRRTTIRLQ-RQG 292 >gi|225075466|ref|ZP_03718665.1| hypothetical protein NEIFLAOT_00471 [Neisseria flavescens NRL30031/H210] gi|224953284|gb|EEG34493.1| hypothetical protein NEIFLAOT_00471 [Neisseria flavescens NRL30031/H210] Length = 253 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE L + + L++ + + GHTD F + N LS RA Sbjct: 91 LFGFDKDNLRPEAQENLDALAQRLSNKDVQTVRVEGHTD---FMGSEQYNQALSERRANV 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV+ +IS + G + Sbjct: 148 VANYLVGHGVASSKISAV-GLGESQ 171 >gi|225024677|ref|ZP_03713869.1| hypothetical protein EIKCOROL_01559 [Eikenella corrodens ATCC 23834] gi|224942566|gb|EEG23775.1| hypothetical protein EIKCOROL_01559 [Eikenella corrodens ATCC 23834] Length = 230 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIAR 282 + ++ + +F PE L ++ + L+ S + + G+TD F Sbjct: 88 VREELVSLSSNFLFGFDKFNLRPEARTTLDELAQRLSGSNVQSVRVEGNTD---FMGSDA 144 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSAN--RRID 335 N RLS RA + + L+ GV ++IS + G + K+ N RR+ Sbjct: 145 YNQRLSERRANTVSEYLVGRGVPAEKISAV-GLGESQAKMTEQCQQEVRNLGRRVS 199 >gi|114767081|ref|ZP_01445964.1| OmpA domain protein [Pelagibaca bermudensis HTCC2601] gi|114540734|gb|EAU43800.1| OmpA domain protein [Roseovarius sp. HTCC2601] Length = 310 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + + L I LA + + + GHTDA+ N +S RA +A Sbjct: 206 FESGSASLGDDAVASLDAIAAYLAETPDRRVLFVGHTDAT---GSLEANIAVSRARADAA 262 Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + GV+ ++ S+ +G+ ++ NRR++ ++ + Sbjct: 263 MDYVRGKGVAAAQLGSEGAGYLAPVASNLTEVGREENRRVEAILLPTE 310 >gi|296130809|ref|YP_003638059.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109] gi|296022624|gb|ADG75860.1| OmpA/MotB domain protein [Cellulomonas flavigena DSM 20109] Length = 198 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 13/110 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ P + ++ L +++ GHTD N LS RA + Sbjct: 93 LFAFDSAELAPGAAGKIGELAAALPQGA-AVAVDGHTDGL---GGDAVNVPLSQARAQAV 148 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------SDP-MNSANRRIDILV 338 L + D + ++G + DP + NRR+++ V Sbjct: 149 ADALTAA--RPDLVLTVTGHGSAQPVAEETTDGLDDPSGRALNRRVEVRV 196 >gi|62179592|ref|YP_216009.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127225|gb|AAX64928.1| putative hydrogenase, membrane component [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714061|gb|EFZ05632.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 350 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 279 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|326315314|ref|YP_004232986.1| OmpA/MotB domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372150|gb|ADX44419.1| OmpA/MotB domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 379 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + LP++ ++++ ++L ++ +++ G+TD + A N LS RA + Sbjct: 277 FATDKTDILPDSQPQIEQVVQLLRQDASLKLAVNGYTDNT---GDAAHNKTLSEGRAKAV 333 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + G+ R+S G A A+D + NRR++++ Sbjct: 334 AAAVAAQGIDASRLSSAGFGAADPVADNATDEGKAKNRRVELV 376 >gi|71280451|ref|YP_270642.1| ompA family protein [Colwellia psychrerythraea 34H] gi|71146191|gb|AAZ26664.1| ompA family protein [Colwellia psychrerythraea 34H] Length = 278 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 14/187 (7%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + K ++ ++ + K++ + + L + +S LVA + Sbjct: 85 VAKYINVNDQNDELSTALVNEQRKQRSNEQIQSQYQAKLQRLEASYQQQLVALETQQHDS 144 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 + +L+S+ F SS P + + ++L S E I + G+TD+ Sbjct: 145 GQLQADNLLMSLQ-------FSTGSSDIAPHYQEQVAALAQILNSSPEMKIDLSGYTDSI 197 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N LS R S +LM GV E +I F +A++ + +RR Sbjct: 198 ---GEQSLNQTLSQARVESVRTLLMAQGVEEQQI-ATFAFGEESPVVANNESEVSFYDRR 253 Query: 334 IDILVED 340 + + + Sbjct: 254 VVLKLHT 260 >gi|255263976|ref|ZP_05343318.1| OmpA family protein [Thalassiobium sp. R2A62] gi|255106311|gb|EET48985.1| OmpA family protein [Thalassiobium sp. R2A62] Length = 189 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 + GHTD+ R N RLS +RA S +V G RI + G+ + + + Sbjct: 121 VTGHTDS---RASDAYNMRLSQNRANSVARVGQSVG---ARIVDVRGYGERQPRADNHSH 174 Query: 327 -MNSANRRIDIL 337 + NRR++I+ Sbjct: 175 QGMAQNRRVEII 186 >gi|213646608|ref|ZP_03376661.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 358 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|192293517|ref|YP_001994122.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] gi|192287266|gb|ACF03647.1| OmpA/MotB domain protein [Rhodopseudomonas palustris TIE-1] Length = 216 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ + ++ +G+ L+ + GHTD+ N LS RA Sbjct: 106 FEYNSANISRQAAAAVEALGKALSSPDLKGGTFVVAGHTDSV---GSDSFNQDLSERRAD 162 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +VL++ G++ + + G+ RLK + P + NRR+ ++ Q Sbjct: 163 TIKRVLVEKYGIAGADLVTV-GYGESRLKDPAHPDSGINRRVQVVNMSDQ 211 >gi|148252154|ref|YP_001236739.1| hypothetical protein BBta_0555 [Bradyrhizobium sp. BTAi1] gi|146404327|gb|ABQ32833.1| hypothetical protein BBta_0555 [Bradyrhizobium sp. BTAi1] Length = 212 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ +++ +Q +G L + GHTDA N LS RA Sbjct: 102 FDYNSANISQKSLASVQALGRALTSPDLKGSTFVVAGHTDA---AGGDAYNQDLSERRAD 158 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 S + L++ G++ + + G+ +LK S P+ NRR+ ++ Sbjct: 159 SIKRYLVEKFGIAGADLVTV-GYGKSKLKDPSQPLAEVNRRVQVV 202 >gi|262039986|ref|ZP_06013251.1| outer membrane protein A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042654|gb|EEW43660.1| outer membrane protein A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 364 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + A N +LS Sbjct: 236 KSDVLFNFNKATLKPEGQQALDQLYTQLSNIDPKDGSAVVLGYTD--RIGSEAY-NQQLS 292 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 293 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 351 Query: 338 VE 339 V+ Sbjct: 352 VK 353 >gi|163737130|ref|ZP_02144548.1| OmpA domain protein [Phaeobacter gallaeciensis BS107] gi|161389734|gb|EDQ14085.1| OmpA domain protein [Phaeobacter gallaeciensis BS107] Length = 326 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + L + E L + + + + GHTD N +S RA + Sbjct: 222 FETGAVTLGAKPYDSLAALAEFLIQNPDFDVLLVGHTDTV---GSLEQNIAISERRADAV 278 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 ++L S V R+ ++G + ANRR+++++ R Sbjct: 279 RRRLLADSAVDRARV-AVAGAGFMAPLTTNLTPEGREANRRVEVVLIRR 326 >gi|129134|sp|P24016|OMPA_CITFR RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II gi|144442|gb|AAA23095.1| outer membrane protein II [Citrobacter freundii] Length = 238 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 119 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 175 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ D+IS G + D + + +RR++I Sbjct: 176 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 234 Query: 338 VE 339 V+ Sbjct: 235 VK 236 >gi|310778685|ref|YP_003967018.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926] gi|309748008|gb|ADO82670.1| OmpA/MotB domain protein [Ilyobacter polytropus DSM 2926] Length = 342 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F +S + + +I +VL ++I G+TD++ A+ N LS RA Sbjct: 235 RELFSVNSYEVTGAGLAEIDEISQVLEGHKGTLTIEGNTDST---GAAKYNMMLSEKRAE 291 Query: 294 SAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA--NRRIDIL 337 + V + + I +S GF + + + NRR+++ Sbjct: 292 AVANVFKAR-LEGEEIEIVSKGFGEENPLVPNTTPEAKAQNRRVEVF 337 >gi|126664268|ref|ZP_01735260.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] gi|126623800|gb|EAZ94496.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] Length = 635 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + L+KI V+ E+ I IR HTD+ N LS RA + Sbjct: 527 FDLDKWDIRQDAAEDLEKIISVMNQYPEMTIDIRSHTDSRQTHAY---NELLSDRRAKAT 583 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 + ++KSG++ +R++ G+ +L S+ + NRR + +V Sbjct: 584 LEFMVKSGINRNRLTA-KGYGETQLVNECSDGVLCSEEDHQKNRRSEFIVM 633 >gi|150388324|ref|YP_001318373.1| OmpA/MotB domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948186|gb|ABR46714.1| OmpA/MotB domain protein [Alkaliphilus metalliredigens QYMF] Length = 314 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 24/245 (9%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 + ++ Q + L SQ + + R E ++ + + Sbjct: 49 NLEYARRQLQDTQQRLEASNLEISQAEDQLRLLTDRVDEIKAEVEDGEIALRLSELQIED 108 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ-- 231 +++ + RLQ +A + + V D++ + + R + I D Sbjct: 109 QSQIIAESNRELGNLRSRLQGIAV-LRLDVLNRVKDSVEEEMARTRDRRDSPVYIADNGN 167 Query: 232 ---RNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTEV-----ISIRGHTDASPFRN 279 +FD +S P VL ++ +L I+I+GHTD + Sbjct: 168 IVIDEELVFDLNSYQIKPAGRQVLDELAMAFENILRDPEVRVNIDAINIQGHTDD--IGS 225 Query: 280 IARDNWRLSLDRAYSAYQVLMKSG-VSEDRISK---ISGFAHHRLK--IASDPMNSANRR 333 N LS +R+ L+ S E+R + S ++ R A++ + NRR Sbjct: 226 AEY-NRNLSANRSVEVVNYLLNSNPTLENRYASYFMASAYSKFRPIASNATEANRAQNRR 284 Query: 334 IDILV 338 I+I + Sbjct: 285 IEISI 289 >gi|260431085|ref|ZP_05785056.1| OmpA family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260414913|gb|EEX08172.1| OmpA family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 209 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ +L + + E + GHTDA N+ L L RA + Sbjct: 65 FAFDSAQLDASAQRILLQQANWIKQFPEARFRVYGHTDAV---GSQSYNYNLGLRRANAV 121 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323 L++ G+S R+ + F R +A Sbjct: 122 VNFLVQQGISRSRLEALVSFGKTRPLVA 149 >gi|254457162|ref|ZP_05070590.1| outer membrane protein, putative [Campylobacterales bacterium GD 1] gi|207085954|gb|EDZ63238.1| outer membrane protein, putative [Campylobacterales bacterium GD 1] Length = 195 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 +K + +L KK LS N K +L E + + F SS E Sbjct: 54 QKVEISNLDKK--EILSKESVQNEYKTLLDEMPKEA-------KNYRLYFKFDSSDMTSE 104 Query: 248 TIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 +I ++KI + + A++ I + G+TD A N LS+ RA + +VL +GV+ Sbjct: 105 SIATIEKIIKDIEANNILQIDVIGYTDR---AGKAAYNKVLSMKRAKNVIKVLTDNGVNS 161 Query: 307 DRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 +I + + I +D + NRR++I ++ Sbjct: 162 -KIISLDYYGEANPIIETDDGVAKKRNRRVEITLK 195 >gi|194450606|ref|YP_002045072.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265555|ref|ZP_03165629.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194408910|gb|ACF69129.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197243810|gb|EDY26430.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|321223685|gb|EFX48748.1| Outer membrane protein A precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|326622756|gb|EGE29101.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 358 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|298369983|ref|ZP_06981299.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281443|gb|EFI22932.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 227 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F I PE L + + L + E + + GHTD F + N LS RA Sbjct: 68 LFGFDKDILRPEAKESLNALAQRLSNSNVESVRVEGHTD---FMGSEQYNQALSERRANV 124 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV+ ++IS + G + Sbjct: 125 VANYLVNQGVASNKISAV-GLGESQ 148 >gi|322418514|ref|YP_004197737.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320124901|gb|ADW12461.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 450 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--D 325 I GHTD+ + N LS RA + L+K GV+ ++ I G+ + + ++ + Sbjct: 376 IEGHTDSV---GDRQSNLNLSQQRAQNVKNELLKHGVAPAKV-AIKGYGFSKPRASNKTN 431 Query: 326 PMNSANRR 333 NRR Sbjct: 432 VGRQKNRR 439 >gi|241759220|ref|ZP_04757326.1| outer membrane Protein p.iii [Neisseria flavescens SK114] gi|241320356|gb|EER56653.1| outer membrane Protein p.iii [Neisseria flavescens SK114] Length = 253 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE L + + L + E + + GHTD F + N LS RA Sbjct: 91 LFGFDKDNLRPEAQENLDALAQRLSNKNVETVRVEGHTD---FMGSEQYNQALSERRANV 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK 321 L+ GV+ +IS + G + + Sbjct: 148 VANYLVGRGVASSKISAV-GLGESQAR 173 >gi|222054197|ref|YP_002536559.1| peptidoglycan-associated lipoprotein [Geobacter sp. FRC-32] gi|221563486|gb|ACM19458.1| peptidoglycan-associated lipoprotein [Geobacter sp. FRC-32] Length = 194 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 12/180 (6%) Query: 163 LEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 +K + K E +PP++ EK K + + + Sbjct: 23 AKKEMVKAEEATVPPVTTEKPAVTPPAKPAPS-----ETVKEQPIQEAPTTTAESTVKEQ 77 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIA 281 + + +FD S + P L K + L + + I GH D R Sbjct: 78 APTVIAATELEKVLFDFDSFVLSPAARDTLSKNAQWLEKNKQVKVQIEGHCDE---RGSD 134 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 N L RA SA L+ G+ ++S IS F + + + NRR + ++ Sbjct: 135 EYNLALGEKRAKSAVNYLVTLGIPASQLSVIS-FGKEKPADPGHDEAAWAQNRRAEFVIL 193 >gi|168233443|ref|ZP_02658501.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472870|ref|ZP_03078854.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248715|ref|YP_002145940.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194459234|gb|EDX48073.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197212418|gb|ACH49815.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332492|gb|EDZ19256.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 371 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 243 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 299 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 300 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 358 Query: 338 VE 339 V+ Sbjct: 359 VK 360 >gi|291085616|ref|ZP_06353500.2| outer membrane protein A [Citrobacter youngae ATCC 29220] gi|291070418|gb|EFE08527.1| outer membrane protein A [Citrobacter youngae ATCC 29220] Length = 360 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 232 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 288 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ D+IS G + D + + +RR++I Sbjct: 289 EKRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 347 Query: 338 VE 339 V+ Sbjct: 348 VK 349 >gi|37704678|gb|AAR01611.1| OprF [Pseudomonas sp. MFY338] Length = 315 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 232 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 288 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 289 KQVLTNQYGVESSRVQSV-GYGESRPVA 315 >gi|2251192|emb|CAA90573.1| outer membrane protein [Pseudomonas aeruginosa] gi|162319694|gb|ABX84373.1| OprL [Pseudomonas aeruginosa] Length = 168 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L S + + + GHTD R N L RA + Sbjct: 69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDE---RGTREYNMALGERRAKAVQ 125 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS + +S + D + + NRR+++ Sbjct: 126 RYLVLQGVSPATLELVSYGKERPVATGHDEQSWAQNRRVEL 166 >gi|293390327|ref|ZP_06634661.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950861|gb|EFE00980.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 356 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + P+ L I +A I + G+TD + A N +LS RA + Sbjct: 243 FAFNKANLKPQAQKTLDGISHEIAQVNNANIQVAGYTD--RIGSDAY-NQKLSQRRAETV 299 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 L+ GVS+ IS +G+ + D + +RR++I V Sbjct: 300 ANYLVSKGVSQQAISA-TGYGKANPVTGNKCDTVKGRKALIACLADDRRVEIAV 352 >gi|89111206|dbj|BAE80295.1| outer membrane protein OmpA [Acidovorax avenae subsp. avenae] Length = 379 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + LP++ ++++ ++L ++ +++ G+TD + A N LS RA + Sbjct: 277 FATDKTDILPDSQPQIEQVVQLLRQDTSLKLAVNGYTDNT---GDAAHNKTLSEGRAKAV 333 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + G+ R+S G A A+D + NRR++++ Sbjct: 334 AAAVAAQGIDASRLSSAGFGAADPVADNATDEGKAKNRRVELV 376 >gi|330010302|ref|ZP_08306729.1| outer membrane protein A [Klebsiella sp. MS 92-3] gi|328534592|gb|EGF61172.1| outer membrane protein A [Klebsiella sp. MS 92-3] Length = 364 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + A N +LS Sbjct: 236 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 292 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 293 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 351 Query: 338 VE 339 V+ Sbjct: 352 VK 353 >gi|254510741|ref|ZP_05122808.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11] gi|221534452|gb|EEE37440.1| OmpA domain protein [Rhodobacteraceae bacterium KLH11] Length = 300 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 30/171 (17%) Query: 196 AKKISSTLSGLVADNIVKG--VLFETTRTG------ILISIIDQRNTPM----------- 236 A + LS LV+ N G + T G ++I + + Sbjct: 131 ATRGDEVLSLLVSRNPPDGYLQMIRVTPAGAQPAPPLVIEETADSSAGLLSDLGRDGHVI 190 Query: 237 -----FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 F L + + LA + +++ GHTD + + N +S Sbjct: 191 LDDLHFRTGEVALGEGPFASLTLLADYLADNPGTRLALVGHTDDT---GDLQANIAVSTK 247 Query: 291 RAYSAY-QVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILVE 339 RA + +++ GV+ DRI ++ G+ A+ NRR++ ++ Sbjct: 248 RAEAVRARLIETYGVAADRIEAQGVGYLAPITSNATPAGRDINRRVEAVLL 298 >gi|37704666|gb|AAR01605.1| OprF [Pseudomonas sp. MFY220] gi|37704668|gb|AAR01606.1| OprF [Pseudomonas sp. MFY222] Length = 315 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 232 FDFDKSVVKPNSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 288 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 289 KQVLTNQYGVESSRVQSV-GYGESRPVA 315 >gi|194443312|ref|YP_002040273.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200390100|ref|ZP_03216711.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205357270|ref|ZP_02346426.2| outer membrane protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194401975|gb|ACF62197.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199602545|gb|EDZ01091.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322778|gb|EDZ10617.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 358 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|37704612|gb|AAR01578.1| OprF [Pseudomonas sp. MFY59] gi|37704620|gb|AAR01582.1| OprF [Pseudomonas sp. MFY68] gi|37704662|gb|AAR01603.1| OprF [Pseudomonas sp. MFY161] Length = 318 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + + GHTD+ N +LS RA + Sbjct: 235 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTTVEGHTDSV---GPDAYNQKLSERRANAV 291 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322 QVL + G+ R+ + G+ R Sbjct: 292 KQVLTQQYGIESSRVDSV-GYGETRPVA 318 >gi|302387785|ref|YP_003823607.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1] gi|302198413|gb|ADL05984.1| OmpA/MotB domain protein [Clostridium saccharolyticum WM1] Length = 262 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 11/149 (7%) Query: 198 KISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 ++ L +V D ++ E TR G + I R+ FD SS+ E VL + Sbjct: 90 ELYLVLKQIVEDRNMQD-SVEITR-GDGFTFISFRDKVFFDGDSSVLRQEGKDVLTQFAA 147 Query: 258 VLAHSTEVI---SIRGHTDAS-PFR-NIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 ++ + + I + GHT P R N R++ LS R+ L + VS +++ Sbjct: 148 AMSQANKSIKEVQVLGHTSQGDPQRPNNIRNDRMLSAQRSAEVIIYLQSQNAVSPEKLVG 207 Query: 312 ISGFAHHRLK--IASDPMNSANRRIDILV 338 +S F R ++ + NRR++IL+ Sbjct: 208 MS-FGQFRPIAQFDTEEGRAQNRRVEILI 235 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 11/190 (5%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNP--------- 71 + D P LGSW Y D +T+L+ FF++++ +++ D K + Q FNP Sbjct: 2 IKKDKKPEELGSWMDTYGDMVTLLLCFFVLLYSMSSVDQSKWKLLVQSFNPSALEESDQV 61 Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKID--LSIDEHITKNSVDLKIGSTNQKKQYQRLEN 129 +T +G P + D + + I ++ + + + Sbjct: 62 VLDAKVTEGEGKLTGGIPDDGGGATDFDELYLVLKQIVEDRNMQDSVEITRGDGFTFISF 121 Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 + S + ++ + ++ K + + + + R Sbjct: 122 RDKVFFDGDSSVLRQEGKDVLTQFAAAMSQANKSIKEVQVLGHTSQGDPQRPNNIRNDRM 181 Query: 190 KRLQDLAKKI 199 Q A+ I Sbjct: 182 LSAQRSAEVI 191 >gi|262373123|ref|ZP_06066402.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205] gi|262313148|gb|EEY94233.1| peptidoglycan-associated lipoprotein [Acinetobacter junii SH205] Length = 188 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS E LQ + L + +++ GHTD R N L RA + Sbjct: 80 FDYDSSDLSNEDYQTLQAHAQFLVANANSRVALTGHTDE---RGTREYNMALGERRAKAV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + A + NRR++I Sbjct: 137 ESFLITNGVNPQQLEAVS-YGKEAPVNAGHNEAAWKENRRVEI 178 >gi|163800821|ref|ZP_02194721.1| putative outer membrane protein [Vibrio sp. AND4] gi|159175170|gb|EDP59967.1| putative outer membrane protein [Vibrio sp. AND4] Length = 204 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 7/113 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S + ++ E L I +RG+ + N LS RA Sbjct: 81 RILFSNDSDDVDTVYRRQIGELSEFLNEYPSTSIELRGYASKV---GGSEHNLDLSKRRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 + L+ G+ R+ +I G L+ + ++ NRR+ V +G Sbjct: 138 SNVRTALLGYGIDPARV-RIVGLGDTHLEQQGTDEVSHALNRRVTASVIGYKG 189 >gi|289764553|ref|ZP_06523931.1| outer membrane porin F [Fusobacterium sp. D11] gi|289716108|gb|EFD80120.1| outer membrane porin F [Fusobacterium sp. D11] Length = 311 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWR 286 +I + +FD PE VL+ + VL + I GHTD+ + N Sbjct: 206 LITLDSGILFDVDKYDVRPEAEEVLKNLAIVLKEADIKAFEIDGHTDSDA---GDKHNQI 262 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 LS +RA + L G++ + I G+ R ++D Sbjct: 263 LSENRANAVKNFLTSQGITAE--ITIKGYGKTRPIASNDT 300 >gi|270159822|ref|ZP_06188478.1| peptidoglycan-associated lipoprotein [Legionella longbeachae D-4968] gi|289165420|ref|YP_003455558.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella longbeachae NSW150] gi|269988161|gb|EEZ94416.1| peptidoglycan-associated lipoprotein [Legionella longbeachae D-4968] gi|288858593|emb|CBJ12474.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella longbeachae NSW150] Length = 175 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P+ + + E L + + GHTD R N L RA + Sbjct: 70 LFSYDDSNLAPKYLPSVNAQAEYLKTHPGARVLLAGHTDE---RGSREYNVALGERRANT 126 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 +L +GV+ +I ++ + R D ++ NRR++ Sbjct: 127 VADILRMAGVNRQQI-RVVSYGKERPINLGHDDASHAQNRRVE 168 >gi|195874240|ref|ZP_02701347.2| outer membrane protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630051|gb|EDX48703.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 358 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|71909209|ref|YP_286796.1| OmpA/MotB [Dechloromonas aromatica RCB] gi|71848830|gb|AAZ48326.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 193 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +S ++ L + + + I + GHTD N RL+ RA + Sbjct: 92 FLEGTSELTADSKKELDGVFDEIKKRKVTDIVVIGHTDTV---GSQESNDRLAEARAKAM 148 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 L GV I K+SG + A + NRR++I V Sbjct: 149 QAELEHLGVDAGSI-KVSGRGEREPLVKTADEVAEPLNRRVEIQV 192 >gi|323496851|ref|ZP_08101888.1| sodium-type flagellar protein MotY [Vibrio sinaloensis DSM 21326] gi|323318110|gb|EGA71084.1| sodium-type flagellar protein MotY [Vibrio sinaloensis DSM 21326] Length = 293 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S ++ L +I E + H+ ++ + + +TDA ++ +++ LS RA Sbjct: 187 YDRTSVELNKQSQKRLAQIAEYIRHNQDIDLVLVSTYTDAEDTKSASQN---LSERRAEV 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LQEYFKSLGLPEDRI-RVQGYGKRRPIDDNASPIGKDRNRRVVISLGRTQ 292 >gi|54309975|ref|YP_130995.1| hypothetical protein PBPRA2821 [Photobacterium profundum SS9] gi|46914414|emb|CAG21193.1| hypothetical protein PBPRA2821 [Photobacterium profundum SS9] Length = 319 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + L ++ + L + E I G TD++ I N ++S RA + Sbjct: 220 YQTGQVDVNDYGRYNLNEVAQTLQANPELTAEIIGRTDSTGTAAI---NAKVSEARANAV 276 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 Q L+ +GV R++ ++ A + + R ++++++ Sbjct: 277 SQYLIDNGVDASRLT-VTSVADQNPLTDDNGKSLIERSVEVVIK 319 >gi|225011622|ref|ZP_03702060.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] gi|225004125|gb|EEG42097.1| OmpA/MotB domain protein [Flavobacteria bacterium MS024-2A] Length = 468 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 28/272 (10%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P K+ G+ + P+ + ID + V+ E+ Sbjct: 214 PDKKDECPEVPGLKEYNGCPDTDGDSVIDKNDICPEVAGKVEFNGCPDTDGDGVSDPEDA 273 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKILAMKRK 189 ++ S + + C ++ G + +TD I +N P + + Sbjct: 274 CIDIAGSIEMKGCPDT------DGDGISDATDSCINEIGPLDNNGCPWPDADNDGVADK- 326 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PET 248 DL K ++S + V+ G I+ F SS L + Sbjct: 327 ---DDLCKDEVGSISNNGCPKLSNEVMKTINEFGAKIN---------FAASSDKILGKKM 374 Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +L KI ++L + + I G+ A N LS+ RA + L K G++ + Sbjct: 375 FDILYKIKDILIENPVGNLLIEGYASAD---GSEEYNIELSVKRAEAVRDFLNKIGINIE 431 Query: 308 RISKISGFAHHRLKIASD--PMNSANRRIDIL 337 R+ + G + ++ + NRR+ + Sbjct: 432 RLE-VRGLGVNSPVGNNESPEGRAENRRVQFI 462 >gi|163748690|ref|ZP_02155943.1| OmpA family protein [Shewanella benthica KT99] gi|161331800|gb|EDQ02604.1| OmpA family protein [Shewanella benthica KT99] Length = 199 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P ++ I + ++I GH + + N LS +RA + Sbjct: 76 LFANDSYYIAPLHYDQVEVIASFMNEFKNTKVTIEGHCSKT---GSYQHNLSLSQNRADA 132 Query: 295 AYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 +L + ++ DR+ I G+++ R S + NRR+ Sbjct: 133 VTSLLTERFSIAPDRLIAI-GYSYDRPVDESGTHRAQTRNRRV 174 >gi|220935396|ref|YP_002514295.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996706|gb|ACL73308.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein [Thioalkalivibrio sp. HL-EbGR7] Length = 181 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S PE V+ G LA + + GHTD R N L RA + Sbjct: 76 FEFDRSDIKPEFEEVIIAHGRFLAQNPNMQVRAEGHTDE---RGTREYNLGLGERRAQAV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 ++LM G D+I ++ + + + NRR++++ Sbjct: 133 QRMLMLQGARADQI-QVVSYGEEMPVAFGRDEESWAQNRRVELV 175 >gi|283784777|ref|YP_003364642.1| outer membrane protein A [Citrobacter rodentium ICC168] gi|282948231|emb|CBG87798.1| outer membrane protein A [Citrobacter rodentium ICC168] Length = 351 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + N LS Sbjct: 223 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDTY-NQGLS 279 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ D+IS G S D + + +RR++I Sbjct: 280 EKRAQSVVDYLISKGIPADKISA-RGMGESNPVTGSTCDNVKARAALIDCLAPDRRVEIE 338 Query: 338 VE 339 V+ Sbjct: 339 VK 340 >gi|269104043|ref|ZP_06156740.1| outer membrane protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163941|gb|EEZ42437.1| outer membrane protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 261 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S LP L + +L H + + GHTD DN+ L L RA + Sbjct: 136 FALNRSELLPAYQQALTQAAAILKRHRHWHVKLVGHTDTQ---GQKHDNYHLGLTRANNV 192 Query: 296 YQVLMKSGVSEDRISKI-SGFAHHRLKIASDPMNSANRRI--DILV 338 + L++ GV+ ++S + +G + S M ANR++ +ILV Sbjct: 193 KRFLLEHGVNGHQVSVLSTGESQAVPDTHSRTMQLANRQVVAEILV 238 >gi|229592294|ref|YP_002874413.1| putative OmpA family lipoprotein [Pseudomonas fluorescens SBW25] gi|126214996|emb|CAM35533.1| OprL protein [Pseudomonas fluorescens] gi|229364160|emb|CAY51808.1| putative OmpA family lipoprotein [Pseudomonas fluorescens SBW25] Length = 166 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TDA R N L RA + Sbjct: 67 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDA---RGTREYNMALGERRAKAVQ 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GV+ ++ +S + +D + + NRR+++ Sbjct: 124 RYLVLQGVAPGQLELVSYGKERPVATGNDEQSWAQNRRVEL 164 >gi|323497326|ref|ZP_08102344.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326] gi|323317409|gb|EGA70402.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326] Length = 203 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 9/107 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ P + ++++ + +A + ++G+ AS N LS RA++ Sbjct: 83 LFANDSAEVQPVFMTQIREVADFMAEFPSTSVELQGY--ASKVGRADY-NLELSKQRAFA 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI--DIL 337 +L+ GV R++ I GF L + + +++ NR++ I+ Sbjct: 140 VEDLLLSYGVDSSRVN-IVGFGDTNLSLEGNDEQVHAQNRKVVASII 185 >gi|284037429|ref|YP_003387359.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283816722|gb|ADB38560.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 704 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 91/276 (32%), Gaps = 36/276 (13%) Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YF + + + + L + I + V + G K + Sbjct: 460 GYF-----TIPASGDYAYLSSRSGSLGEDDIFRLKLYPAIKPDPVAIISGLVLDSKTKKP 514 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + + I Q K ++ + K + + +E YF + L + Sbjct: 515 IASEIVSTLLGDQKPLGKVDFNPETGEYKLILPTQKTYVLTATKEGYF----PTIETLDL 570 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + KR +D+ K + G I++ + +F +S LP Sbjct: 571 SKDKRFRDIKK----------------NLYLAKIEAGQTITMRE----VLFQQSQFTLLP 610 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 L K+ +++ + I GHTD N +L+ DR + L+K G+ Sbjct: 611 GADTELDKMADMMETHPTMELLIEGHTDNQ---GDWEPNMKLAEDRVRVVKEYLLKKGIK 667 Query: 306 EDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 +RI + + + +++ NRR++ + Sbjct: 668 PERI-QTKAWGPSKPIASNETEEKRKLNRRVEFTIL 702 >gi|149372358|ref|ZP_01891546.1| outer membrane protein, peptidoglycan-associated lipoprotein [unidentified eubacterium SCB49] gi|149354748|gb|EDM43311.1| outer membrane protein, peptidoglycan-associated lipoprotein [unidentified eubacterium SCB49] Length = 631 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + + LQKI +L + I +R HTD+ R N LS RA + Sbjct: 524 FDLDKSFIRSDAAIELQKIISLLNQYPQMKIDVRSHTDS---RADDAYNLDLSDRRAKAT 580 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 L+K+G+ R+S G+ +L + + NRR + ++ + Sbjct: 581 IAYLIKNGIDSSRLSG-RGYGETQLINGCSNGVDCTSIEHQLNRRSEFIIVE 631 >gi|37704676|gb|AAR01610.1| OprF [Pseudomonas sp. MFY315] Length = 316 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316 >gi|237756911|ref|ZP_04585384.1| putative OmpA/MotB domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690932|gb|EEP60067.1| putative OmpA/MotB domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 260 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS E + L + + L + I+G+TD + ++ +L+L RA + Sbjct: 155 FYSNSSKIKKEYLPYLNVVAKYLKTHPDVKVKIKGYTDN--IGSKKYND-KLALKRAEAV 211 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 Q L+K GVS +RI I G ++++ NRR + + + Sbjct: 212 KQYLIKLGVSPNRIM-IDGVGKSEYIVSNNNELDRFTNRRAEFYIIN 257 >gi|328470084|gb|EGF40995.1| putative outer membrane protein OmpA [Vibrio parahaemolyticus 10329] Length = 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L +++ + + I G++D + A+ N +L+ RA + Sbjct: 215 FGLESAEVKDAS--ALSGTVDLMNTYPQAKVEITGYSDTT---GSAQYNQQLTEKRAKAV 269 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G++ DR++ + G +++ ANRR++++V Sbjct: 270 ANEFEAKGIAADRMT-VKGMGEANPVASNETRQGREANRRVEVVV 313 >gi|294787779|ref|ZP_06753023.1| putative OmpA family protein [Simonsiella muelleri ATCC 29453] gi|294484072|gb|EFG31755.1| putative OmpA family protein [Simonsiella muelleri ATCC 29453] Length = 214 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 36/158 (22%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSSSIPLPETIVVLQKIG 256 D IV+ V ++G+ I D R M F+ ++ PE +L ++ Sbjct: 46 QNAQRDEIVQDVQQALKKSGLEIE-TDPRTGDMNIAADFAFESGKAVLKPEGKAILDQLM 104 Query: 257 EVLAHSTE------------VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 V A + + + GHTD+ N +LS +RA + + + + Sbjct: 105 PVFAKAVFDELSGEQQEEITRLIVEGHTDSV---GSYASNMQLSTERANAVLSY-IDTQM 160 Query: 305 SE--------DRISKISGFAHHRLKIASDPMNSANRRI 334 + +++ + G + +P + RR+ Sbjct: 161 PDFPHKAELLAKMTAV-GRGENDASPTENPAD---RRV 194 >gi|260597356|ref|YP_003209927.1| outer membrane protein A [Cronobacter turicensis z3032] gi|260216533|emb|CBA29736.1| Outer membrane protein A [Cronobacter turicensis z3032] Length = 355 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + + N LS Sbjct: 227 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDSY-NQGLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 284 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIECLGPDRRVEIE 342 Query: 338 VE 339 V+ Sbjct: 343 VK 344 >gi|271963004|ref|YP_003337200.1| OmpA/MotB domain-containing protein [Streptosporangium roseum DSM 43021] gi|270506179|gb|ACZ84457.1| OmpA/MotB domain protein [Streptosporangium roseum DSM 43021] Length = 193 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASP 276 T+ G +++ + +F ++ + L+ + + + V+ I GHTD Sbjct: 66 ETKQGETVTLALTSD-VLFALDRAVLTAKAAARLRGVAGRVKTESAGGVVKIVGHTDDQ- 123 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNS 329 N RLSL RA + + L + + +G + K+ + + + Sbjct: 124 --GTDAYNDRLSLRRAQAVQEGLRALLSGQSVTFEATGLGERQPKVPNVVDGRPVEENRA 181 Query: 330 ANRRIDIL 337 NRR++I+ Sbjct: 182 RNRRVEIV 189 >gi|153837108|ref|ZP_01989775.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810] gi|149749696|gb|EDM60441.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ3810] Length = 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L +++ + + I G++D + A+ N +L+ RA + Sbjct: 215 FGLESAEVKDAS--ALSGTVDLMNTYPQAKVEITGYSDTT---GSAQYNQQLTEKRAKAV 269 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G++ DR++ + G +++ ANRR++++V Sbjct: 270 ANEFEAKGIAADRMT-VKGMGEANPVASNETRQGREANRRVEVVV 313 >gi|146283137|ref|YP_001173290.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas stutzeri A1501] gi|145571342|gb|ABP80448.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas stutzeri A1501] gi|327481490|gb|AEA84800.1| peptidoglycan-associated lipoprotein OprL [Pseudomonas stutzeri DSM 4166] Length = 167 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + GHTD R N L R+ + Sbjct: 68 FEYDSSDLKPEAMRALDVHAKDLKGNGARVVLEGHTDE---RGTREYNMALGERRSKAVQ 124 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS ++ +S + + +D + + NRR+++ Sbjct: 125 RYLVLQGVSPAQLELVSYGEERPVAMGNDEQSWAQNRRVEL 165 >gi|83312507|ref|YP_422771.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] gi|82947348|dbj|BAE52212.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] Length = 278 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 9/103 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S E L+++ I + GHTD ++ D +LS RA + Sbjct: 178 FDFNKSTLTKEAQKTLKEVATAAGQIKPASIYVAGHTDTV-GKSGYND--KLSNARAAAV 234 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 + L K+G+ F +L + + + + NRR++I Sbjct: 235 SKQLAKAGIKS---IDAKSFGFTKLAVPTKANTKEAKNRRVEI 274 >gi|28900103|ref|NP_799758.1| putative outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633] gi|260365754|ref|ZP_05778250.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030] gi|260880676|ref|ZP_05893031.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034] gi|260897717|ref|ZP_05906213.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466] gi|260899371|ref|ZP_05907766.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037] gi|28808386|dbj|BAC61591.1| putative outer membrane protein OmpA [Vibrio parahaemolyticus RIMD 2210633] gi|308086262|gb|EFO35957.1| outer membrane protein OmpA [Vibrio parahaemolyticus Peru-466] gi|308092198|gb|EFO41893.1| outer membrane protein OmpA [Vibrio parahaemolyticus AN-5034] gi|308109307|gb|EFO46847.1| outer membrane protein OmpA [Vibrio parahaemolyticus AQ4037] gi|308114934|gb|EFO52474.1| outer membrane protein OmpA [Vibrio parahaemolyticus K5030] Length = 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + L +++ + + I G++D + A+ N +L+ RA + Sbjct: 215 FGLESAEVKDAS--ALSGTVDLMNTYPQAKVEITGYSDTT---GSAQYNQQLTEKRAKAV 269 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G++ DR++ + G +++ ANRR++++V Sbjct: 270 ANEFEAKGIAADRMT-VKGMGEANPVASNETRQGREANRRVEVVV 313 >gi|255536293|ref|YP_003096664.1| Thrombospondin type 3 repeat:OmpA/MotB [Flavobacteriaceae bacterium 3519-10] gi|255342489|gb|ACU08602.1| Thrombospondin type 3 repeat:OmpA/MotB [Flavobacteriaceae bacterium 3519-10] Length = 477 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 12/106 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S LP +L + S S+ G TDA N LS RA + Sbjct: 371 FDFDSDRILPSNTPILNNAVNYINTSNGNYSVIGGTDA---SGSEAYNQGLSERRANTVK 427 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 L+++GV ++ + G LK +P N ANRR+ Sbjct: 428 NYLIQNGVESAKLQSV-GRGEKELKYPECNPTSKCPEWKNRANRRV 472 >gi|319956779|ref|YP_004168042.1| ompa/motb domain protein [Nitratifractor salsuginis DSM 16511] gi|319419183|gb|ADV46293.1| OmpA/MotB domain protein [Nitratifractor salsuginis DSM 16511] Length = 490 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 31/229 (13%) Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q+ + + + L ++ + + ++ L L K+K RL+ Sbjct: 251 QQKQKKLQEYANKVIVLSNKLTRTENELRLKDENLTRLLEALDKQKSRYEDLIARLRKQR 310 Query: 197 KKISS------TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 +I S + + + + K + + + +S + +FDK S+ E Sbjct: 311 ARIKSLTGIRLKVIDALKETLGKRIAIDKKSGALRLS-----SKILFDKGSAELKEEAKA 365 Query: 251 VLQK-----IGEVLAHST-----EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 L+ I ++++ + I I GHTD+ N LS RA + L+ Sbjct: 366 ELKDTFEKYIAALMSNRAIRPYLDRIIIEGHTDS---DGGYLYNLELSQKRALAVMNYLL 422 Query: 301 KSGVSE----DRISKISGFAHHRLKIASDPMN-SANRRIDI--LVEDRQ 342 +++ + SG A+ I + + A+RRI+I + +R+ Sbjct: 423 SLPIAQKYHLKKYLVASGRAYMDPIIKNGVEDKEASRRIEIKFTLRNRE 471 >gi|62901665|gb|AAY18798.1| OmpA [Cronobacter sakazakii] Length = 347 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 219 KSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 275 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ ++IS G + D + + +RR++I Sbjct: 276 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKARAALIDCLGPDRRVEIE 334 Query: 338 VE 339 V+ Sbjct: 335 VK 336 >gi|260459525|ref|ZP_05807780.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] gi|259035079|gb|EEW36335.1| OmpA/MotB domain protein [Mesorhizobium opportunistum WSM2075] Length = 121 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ ++ I + L + I GHTDA + N LS R Sbjct: 12 FAFGSAAISSSQYGKIENIADALKRILRRDRGARVLIEGHTDAV---GSFQSNQVLSEQR 68 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S + L++ GV + + G+ L + + N NRR+ + Sbjct: 69 AASLKRTLVREFGVPGHALETV-GYGEEFLLVPTQNENWQNRRVTL 113 >gi|88800186|ref|ZP_01115754.1| peptidoglycan-associated lipoprotein [Reinekea sp. MED297] gi|88777032|gb|EAR08239.1| peptidoglycan-associated lipoprotein [Reinekea sp. MED297] Length = 188 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + + L + LV +++ + E + ++D FD S+ PE I Sbjct: 41 EEVDTLELETDDESIELVVEDVEPVAVIEDAAEDVYNELLDLT-LVYFDFDKSVIRPEFI 99 Query: 250 VVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +L E L + + + GH D R N L RA LM GVS + Sbjct: 100 DMLNAHSEFLVANPTQMVVLEGHADE---RGTREYNLALGERRAKQVATYLMVQGVSAAQ 156 Query: 309 ISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 I +S + + ++ S NRR++I+ Sbjct: 157 IDTVS-YGEEKPLAIGKTEAEYSQNRRVEIV 186 >gi|307545157|ref|YP_003897636.1| peptidoglycan-associated lipoprotein [Halomonas elongata DSM 2581] gi|307217181|emb|CBV42451.1| K03640 peptidoglycan-associated lipoprotein [Halomonas elongata DSM 2581] Length = 180 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S PE VL L ++ + ++GHTD R N L RA + Sbjct: 80 FAFDSDAIRPEFQSVLNAHARFLRNNPNANVVLQGHTDE---RGTREYNLALGERRAGAV 136 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 + L GVS ++ +S + R +++ + NRR+ Sbjct: 137 EEFLSVQGVSPSQVEVVS-YGEERPAARGSNEEAYAQNRRV 176 >gi|296136329|ref|YP_003643571.1| OmpA/MotB domain protein [Thiomonas intermedia K12] gi|294340565|emb|CAZ88950.1| putative OmpA/MotB precursor [Thiomonas sp. 3As] gi|295796451|gb|ADG31241.1| OmpA/MotB domain protein [Thiomonas intermedia K12] Length = 230 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 21/117 (17%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 F + ++ LP L + + + I G+TD+ F ++A N +LS+ RA + Sbjct: 113 FFQFNKAVLLPAGKEKLDDLAGKIKAINLEVVIATGYTDS--FGSVAY-NQKLSVRRAEA 169 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN------------SANRR--IDIL 337 L+ GV D+I + G ++ DP + + NRR ++++ Sbjct: 170 VKAYLVSQGVPADKIY-VEGKGKTDFRV--DPKSCKGSFKSQVECQAPNRRTVVEVV 223 >gi|291437526|ref|ZP_06576916.1| secreted protein [Streptomyces ghanaensis ATCC 14672] gi|291340421|gb|EFE67377.1| secreted protein [Streptomyces ghanaensis ATCC 14672] Length = 218 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 19/195 (9%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + T +++ + T+ S E + P L + K L I + Sbjct: 32 GATTAYADESPSVPPGTEATASAPVELDPNDPDLKLPDGATLAEPKVLD-----IKQVVE 86 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263 D + + + +F K S+ + + I E + + Sbjct: 87 DQSGDERREDTNSDVK--------FALQAEVLFGKDSAKLGAQAKARIATIAEEIKTQNA 138 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I + G TD + D LS RA + + VL + D ++ G+ Sbjct: 139 TRIRVFGFTDNL-GSSAHGDV--LSRQRANAVHGVLEQELNDSDVTYEVRGYGEQYPIAD 195 Query: 324 SDPMNSA--NRRIDI 336 + NRR++I Sbjct: 196 NSTEAGRKKNRRVEI 210 >gi|312148404|gb|ADQ31063.1| outer membrane protein [Borrelia burgdorferi JD1] Length = 381 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + + + + +K + E GI +S D F +S L + + I ++ Sbjct: 245 IETEVENYIREKKIKAIKIEKNNKGINLS-FDIE----FYPNSFQILQKEYKKIDLIAKL 299 Query: 259 LAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFA 316 L I I GHT+ LS RA + L+K V +D+I G+ Sbjct: 300 LEKFKKNNILIEGHTEQFGLEEEMH---ELSEKRARAIGNYLIKMKVKDKDQIL-FKGWG 355 Query: 317 HHRLKIA-SDPMNSANRRIDILVED 340 + K S P+ + NRR++I + + Sbjct: 356 SQKPKYPKSSPLKAKNRRVEITILN 380 >gi|316936147|ref|YP_004111129.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315603861|gb|ADU46396.1| OmpA/MotB domain protein [Rhodopseudomonas palustris DX-1] Length = 216 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ +S+ + ++ +G+ L+ + GHTD+ N LS RA Sbjct: 106 FEYNSANISRQAAPAVEALGKALSSPDLKGATFVVAGHTDSV---GGEGFNQELSERRAD 162 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + +VL++ G+ RLK + P + NRR+ ++ Q Sbjct: 163 TIKRVLVEKYDIAGADLVTVGYGESRLKDPAHPDSGVNRRVQVVNMSDQ 211 >gi|104780481|ref|YP_606979.1| OmpA family outer membrane protein [Pseudomonas entomophila L48] gi|95109468|emb|CAK14169.1| putative outer membrane protein, OmpA family [Pseudomonas entomophila L48] Length = 322 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 7/202 (3%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + K + ++ P S+EK A ++ A + Sbjct: 37 GSDKVAEQEVKAAVTENVAKADAKSESSSRWWWPFGSEEKKPAAAAVPKIDQKATQAWLD 96 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-H 261 +KG E R ++++ ++ ++ LP T+ + ++ +V+ Sbjct: 97 QYEPKVREAIKGSKLELERREDVLAVTIPVDSSYNPDRPNMLLPITLGPITQVAKVIETD 156 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + + I GH D+ N +LSL+RA S + SG+ DR+ + G + Sbjct: 157 TKTAVLILGHADS---SGATAANQKLSLERAASVSAIFRLSGLQRDRLM-LKGMGSVMPR 212 Query: 322 IASD--PMNSANRRIDILVEDR 341 A+D + NRR+++L+ + Sbjct: 213 AANDSAEGRALNRRVEMLLTPQ 234 >gi|237737904|ref|ZP_04568385.1| outer membrane protein OprF [Fusobacterium mortiferum ATCC 9817] gi|229419784|gb|EEO34831.1| outer membrane protein OprF [Fusobacterium mortiferum ATCC 9817] Length = 1511 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + V++K E + I I G+TD + N +LSL+RA Sbjct: 1406 FEFDKAELNNNSKKVIEKFSEEINRDNLKGKIKIEGYTDNV---GKSSYNEKLSLERATK 1462 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 + L K + D +I G ++ + NRR++I Sbjct: 1463 VAEELKKQVKNSDTEYEILGKGASNPIGNNETEVGRAKNRRVEI 1506 >gi|127512720|ref|YP_001093917.1| OmpA/MotB domain-containing protein [Shewanella loihica PV-4] gi|126638015|gb|ABO23658.1| OmpA/MotB domain protein [Shewanella loihica PV-4] Length = 251 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 20/190 (10%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV 215 + T S K++ L + ++ + L + ++ L +G Sbjct: 69 GMIGQTVANDSEIKQQQATLAEQESRMMALKQQNEALLTVQQEYQEAKVELAQLRQHQGT 128 Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDA 274 E G+ + F SS P L ++ + +A S + + G+ D Sbjct: 129 RLEELALGLNVQ---------FKTGSSTVEPHFQSQLNEVADAMAISPQLKLDLTGYADR 179 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN--- 331 R + N LS R L+ GV E R+ + D + N Sbjct: 180 ---RGDSSYNQALSEQRVAEVRSYLVSKGVDEARLDA-KAYGASAPV--KDEQSFENDFF 233 Query: 332 -RRIDILVED 340 RR+ I + Sbjct: 234 DRRVTIKLLP 243 >gi|332188223|ref|ZP_08389951.1| peptidoglycan-associated lipoprotein [Sphingomonas sp. S17] gi|332011722|gb|EGI53799.1| peptidoglycan-associated lipoprotein [Sphingomonas sp. S17] Length = 174 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F PE+ +L L I+I GH D R N L RA +A Sbjct: 72 FGLDQYDIDPESRAILDSQAGWLMRYPNVRITIEGHCDE---RGTREYNLALGDRRANAA 128 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338 L GVS DR++ IS + + SD + + NRR + +++ Sbjct: 129 KNYLAARGVSADRMTVISYGKERPIALGSDEASYAQNRRAVTVVL 173 >gi|315179667|gb|ADT86581.1| OmpA family protein [Vibrio furnissii NCTC 11218] Length = 344 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 9/116 (7%) Query: 226 ISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIAR 282 I+ + R+T + F L+ + V + I GHTD R Sbjct: 210 ITFAEARDTSLYFASGQQSLSGAQQHTLRDLISYVVRDKRATHLLIDGHTDNVGSRLA-- 267 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 N +S RA VL GV+ D+I +I A++ + NRR+ I Sbjct: 268 -NLSVSRSRAEQVAAVLETLGVAADKI-QIRAHGSRYPVASNATESGRAQNRRVVI 321 >gi|289627038|ref|ZP_06459992.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647994|ref|ZP_06479337.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867282|gb|EGH01991.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 381 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 23/303 (7%) Query: 42 TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 ++++A + + T A ++ FG +A G + P + + Sbjct: 6 SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGTAAKAPAPSTAPAPVAKAA 65 Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + +++ + +L SE Sbjct: 66 AAPAAPAAGAENSAPWYWPFGSKDNAQVKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E ++ + +P + + RL+ +K F+ R Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDGYEPRLRA----------------AIKDSPFQLER 169 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 L++I ++ ++ LP T+ + ++ +V+ + I GH D Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N ++S +RA S + SG+ +R+S+ G + A+D + NRR++IL+ Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285 Query: 339 EDR 341 + Sbjct: 286 TPQ 288 >gi|89900877|ref|YP_523348.1| OmpA/MotB [Rhodoferax ferrireducens T118] gi|89345614|gb|ABD69817.1| OmpA/MotB [Rhodoferax ferrireducens T118] Length = 177 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE +++ L A + ++I GHTD R N L RA + Sbjct: 76 FDYDSYVIKPEFQSLIEVHARYLKADKSRKVAIEGHTDE---RGGREYNLALGQKRAEAV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L GV + ++ +S F + + + + + NRR +I Sbjct: 133 RSALGLLGVVDSQVEAVS-FGKEKPAVQGSDEAAMAKNRRAEI 174 >gi|186896079|ref|YP_001873191.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|186699105|gb|ACC89734.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis PB1/+] Length = 560 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 232 RNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 + P+FD +S+ +T ++ ++ ++ + I I GH+D + ++ LS Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMT---LS 493 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + L+K G + NRR+++L+ Q Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549 >gi|51596997|ref|YP_071188.1| OMPA family outer membrane porin [Yersinia pseudotuberculosis IP 32953] gi|51590279|emb|CAH21916.1| putative OMPA family outer membrane porin [Yersinia pseudotuberculosis IP 32953] Length = 560 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 232 RNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 + P+FD +S+ +T ++ ++ ++ + I I GH+D + ++ LS Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMT---LS 493 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + L+K G + NRR+++L+ Q Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549 >gi|153947393|ref|YP_001400334.1| OmpA domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|170023708|ref|YP_001720213.1| OmpA/MotB domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|152958888|gb|ABS46349.1| OmpA domain protein [Yersinia pseudotuberculosis IP 31758] gi|169750242|gb|ACA67760.1| OmpA/MotB domain protein [Yersinia pseudotuberculosis YPIII] Length = 560 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 232 RNTPMFDKSSSIPL--PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 + P+FD +S+ +T ++ ++ ++ + I I GH+D + ++ LS Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMT---LS 493 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + L+K G + NRR+++L+ Q Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549 >gi|260773224|ref|ZP_05882140.1| sodium-type flagellar protein MotY precursor [Vibrio metschnikovii CIP 69.14] gi|260612363|gb|EEX37566.1| sodium-type flagellar protein MotY precursor [Vibrio metschnikovii CIP 69.14] Length = 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 9/111 (8%) Query: 237 FDKS-SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +D+ S + L +I + + +++ + +TD S RN ++ LS RA Sbjct: 218 YDRGNSVELNKASQKRLAQIADYIRYNQDIDLVLVATYTDTSEGRNESQS---LSERRAE 274 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 S + G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 275 SLQRYFRTLGLPEDRI-QVQGYGQRRPIADNASPIGRDKNRRVVISLGRTQ 324 >gi|157146352|ref|YP_001453671.1| outer membrane protein A [Citrobacter koseri ATCC BAA-895] gi|157083557|gb|ABV13235.1| hypothetical protein CKO_02111 [Citrobacter koseri ATCC BAA-895] Length = 356 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ D+IS G + D + + +RR++I Sbjct: 285 EKRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 343 Query: 338 VE 339 V+ Sbjct: 344 VK 345 >gi|319943001|ref|ZP_08017284.1| peptidoglycan-associated lipoprotein [Lautropia mirabilis ATCC 51599] gi|319743543|gb|EFV95947.1| peptidoglycan-associated lipoprotein [Lautropia mirabilis ATCC 51599] Length = 189 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S LPE +++ L AH + I + G+TD N L RA + Sbjct: 87 FFEFDSFAILPEYQPIIEAHANYLSAHRDKHIVLEGNTDEF---GSREYNLALGQKRADA 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 + L GV E+++ IS + + + + + S NRR+DI Sbjct: 144 VRRALSTLGVDENQMESIS-YGEEKPRASGTDESSRSQNRRVDI 186 >gi|239832781|ref|ZP_04681110.1| peptidoglycan-associated lipoprotein [Ochrobactrum intermedium LMG 3301] gi|239825048|gb|EEQ96616.1| peptidoglycan-associated lipoprotein [Ochrobactrum intermedium LMG 3301] Length = 183 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 74 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 130 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D + S NRR + V + G Sbjct: 131 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADSCWSQNRR-AVTVLNGAG 182 >gi|110679377|ref|YP_682384.1| peptidoglycan-associated lipoprotein, putative [Roseobacter denitrificans OCh 114] gi|109455493|gb|ABG31698.1| peptidoglycan-associated lipoprotein, putative [Roseobacter denitrificans OCh 114] Length = 170 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S P L+ + +LA++ I GH D N L R Sbjct: 60 DRVLFAVDESSINPAGQTTLEGQAQWLLANTDYTAVIEGHADEQ---GTREYNVALGARR 116 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A + + L+ GV+ +R+ +S + R +S+ + NRR Sbjct: 117 ANAVREYLISRGVAGNRLQTVS-YGKERPIEICSSEECYAKNRR 159 >gi|224584423|ref|YP_002638221.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468950|gb|ACN46780.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 358 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|254786950|ref|YP_003074379.1| OmpA/MotB domain-containing protein [Teredinibacter turnerae T7901] gi|237683752|gb|ACR11016.1| OmpA/MotB domain protein [Teredinibacter turnerae T7901] Length = 311 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 223 GILISIIDQRNT--PMFDKS-SSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPF 277 G+L + DQ F + L +I ++ H + I H A Sbjct: 169 GLLPANFDQLKRTSLYFVVGYTDKLSRAATQKLDQIILLVKHDKAINQFIIDAHASAE-- 226 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 DN LS RA L+ G+ E ++ + ++D + NRR+ Sbjct: 227 -GTRIDNLELSKTRADLVRDYLVGHGIPESQLV-VRWHGERYPVASNDSSSGRAKNRRVT 284 Query: 336 I 336 + Sbjct: 285 V 285 >gi|90579228|ref|ZP_01235038.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14] gi|90440061|gb|EAS65242.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14] Length = 326 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTE 264 +V + I + T + +++ ++ K ++ P + ++ Sbjct: 187 VVEEPIYVNQVTIATLEELRLTVPFAFDSSTITKGDAAKLAPFEQRLKEQDAA------- 239 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA 323 I + GHTD+ R N LS+ RA + L + + RI G + Sbjct: 240 KIYVVGHTDS---RGAESYNQTLSVKRAEAVADALRQHLKMDSTRIIA-QGRGESEPVAS 295 Query: 324 S--DPMNSANRRIDIL 337 + + + NRR+DI+ Sbjct: 296 NQTEEGRAQNRRVDII 311 >gi|116620548|ref|YP_822704.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223710|gb|ABJ82419.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 262 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 22/228 (9%) Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 + +T Q + + N QQ E +N + + E+ ++ + S + Sbjct: 26 VRNTTAPVQAKVDQVGDQTTRNGQQIEDTRNQVKQVDERAQNGISAAQERASSADQHAAT 85 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + E + + +L + A N +K V+ + S+ Sbjct: 86 ADQHAGEAMTRANQANQLGE---------QNTQALNSLKSVVSNIDDYKLQTSVAVP--- 133 Query: 235 PMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + + L K+ +V + I++ G+TD + N LS RA Sbjct: 134 --FQFNKYNLSSDAKQDLDKLASDVKSDKRYFIAVEGYTDKT---GSKAYNSALSRRRAD 188 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 + + L+ V RI I G + + + NRR+++ V Sbjct: 189 AVVEYLVAQHDVPIYRIHMI-GLGDEKPVDEAKNRAARAKNRRVEVKV 235 >gi|330968986|gb|EGH69052.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 96 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 256 GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS- 313 L + + + + G+TD++ A N LS RA S L++ GV R+ + Sbjct: 1 AAFLQENPDRKVIVEGYTDST---GSASYNQSLSERRANSVRMALVRMGVDPARVVTMGY 57 Query: 314 GFAHHRLKIASDPMNSANRRIDILVED 340 G + S+ + NRR+++ + + Sbjct: 58 GKEYPVADNTSNSGRAMNRRVEVTISN 84 >gi|319639245|ref|ZP_07993996.1| outer membrane protein class 4 [Neisseria mucosa C102] gi|317399429|gb|EFV80099.1| outer membrane protein class 4 [Neisseria mucosa C102] Length = 253 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE L + + L S + + + GHTD F + N LS RA Sbjct: 91 LFGFDKDNLRPEAQENLDALAQRLSNESVQTVRVEGHTD---FMGSEQYNQALSERRANV 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK 321 L+ GV+ +IS + G + + Sbjct: 148 VANYLVGHGVASSKISAV-GLGESQAR 173 >gi|148258086|ref|YP_001242671.1| outer membrane lipoprotein omp16 [Bradyrhizobium sp. BTAi1] gi|146410259|gb|ABQ38765.1| Outer membrane lipoprotein omp16 precursor (peptidoglycan-associated lipoprotein) [Bradyrhizobium sp. BTAi1] Length = 149 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ I L+K + L +I GH D R N L R Sbjct: 41 DRVFFESDQTDLTPQAIATLEKQAQWLQTYPRYSFTIEGHADE---RGTREYNIALGARR 97 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L+ G+ + R+ IS + R + ++ S NRR Sbjct: 98 AQSVRNFLVSRGIDQGRMRTIS-YGKERPVAVCNDISCWSQNRR 140 >gi|71279065|ref|YP_267707.1| ompA family protein [Colwellia psychrerythraea 34H] gi|71144805|gb|AAZ25278.1| ompA family protein [Colwellia psychrerythraea 34H] Length = 352 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 +D F+ +SS ET+ +Q++ + + + I GH+ A A+ N L Sbjct: 232 VDVDLNVAFENNSSQIKAETMNDIQRLADFMKEYKNTSVVIEGHSSA---AGSAKYNLAL 288 Query: 288 SLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 S RA + +L+ K + E R+S GF +L + NRR+ Sbjct: 289 SQKRADAVKSLLINKFDIEESRLSA-KGFGETQLISKGNTAADHELNRRV 337 >gi|84385674|ref|ZP_00988705.1| Conserved hypothetical outer membrane protein [Vibrio splendidus 12B01] gi|84379654|gb|EAP96506.1| Conserved hypothetical outer membrane protein [Vibrio splendidus 12B01] Length = 212 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 13/159 (8%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + ++++ +L + ++ + + + K + R G+L + F Sbjct: 53 RQGFIQIEQQSDSSELKQALADQSNLGMNQSGCKTWISNQERHGLLARLH-------FGF 105 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 P L ++ L + I++ GHTD++ A N L L RA + L Sbjct: 106 DQHNLSPMGSKALSQLAGELKTNGSAITVDGHTDST---GEAGYNQALGLQRALTTSDGL 162 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + GV ++R+ I F + ++ + NRR +I Sbjct: 163 VADGVEKNRLV-IRSFGESKPIASNATAEGRAKNRRSEI 200 >gi|332664542|ref|YP_004447330.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333356|gb|AEE50457.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 22/192 (11%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 CK+ ++ ++ EE+ K+ + +K L L + Sbjct: 40 CKNQTPKEPVSPEEDPLGAIEDMVNETKALAKEEAARVDEKTQKALESLRSVKFDP---- 95 Query: 218 ETTRTGILISIIDQRNTPM---------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VIS 267 ET + +I+ ++ M F + LP L ++ ++A E Sbjct: 96 ETVGEKLYQAILAGKDLKMEVFLFKTLNFVPEQADVLPAMKPELTQLANIMAAFPEFKFQ 155 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I HT N LS RA S + L K GV++ R+ G+ L IA M Sbjct: 156 IAAHTAGV---GDHILNLTLSHHRATSIVEALEKMGVAKSRMKA-RGYGD-ELPIADHTM 210 Query: 328 ---NSANRRIDI 336 AN+RI++ Sbjct: 211 PEGREANQRIEL 222 >gi|51244590|ref|YP_064474.1| peptidoglycan-associated lipoprotein precursor [Desulfotalea psychrophila LSv54] gi|50875627|emb|CAG35467.1| related to peptidoglycan-associated lipoprotein precursor [Desulfotalea psychrophila LSv54] Length = 231 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 10/188 (5%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR-LQDLAKKISSTLSGLVADNIV 212 G K + N +E Y +P + + + L + + T S A+ + Sbjct: 48 GGCNSKKVVAPPTGNAQEEYNIPAIPPAQDENQDYGEEDLPPVVGSLDDTDSNAAAEELA 107 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGH 271 + SI + F ++ PE V+ + +VL + I++ G+ Sbjct: 108 SKQSEAYLQQHGRSSI--EFQPVYFKFDQTMINPEMQEVIFENAQVLKRNPTLYITVEGN 165 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-- 329 TD R N L RA + + L+ G+ E+RI +S R + + Sbjct: 166 TDD---RGTNEYNMALGEKRAINVEKYLISLGIGENRIRTVS-LGEERPLFPTQTEAAYL 221 Query: 330 ANRRIDIL 337 NRR D + Sbjct: 222 YNRRADFI 229 >gi|254284085|ref|ZP_04959053.1| peptidoglycan-associated lipoprotein [gamma proteobacterium NOR51-B] gi|219680288|gb|EED36637.1| peptidoglycan-associated lipoprotein [gamma proteobacterium NOR51-B] Length = 180 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F SS + + + +L S E I + GHTD R N L RA + Sbjct: 82 FAFDSSELNDASRMAIDAHIALLLVSDESIRLEGHTDE---RGTREYNLALGERRANAVR 138 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 ++ +GV RI IS + + + S NRR+++ Sbjct: 139 DYMVANGVPSYRIETIS-YGEENPIAFGSGEANWSENRRVEL 179 >gi|149286|gb|AAA25119.1| outer membrane protein II [Klebsiella pneumoniae] Length = 243 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + A N +LS Sbjct: 124 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEAY-NQQLS 180 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 181 EKRAQSVVDYLVAKGIPAGKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 239 Query: 338 VE 339 V+ Sbjct: 240 VK 241 >gi|76812099|ref|YP_333598.1| ompA family protein [Burkholderia pseudomallei 1710b] gi|76581552|gb|ABA51027.1| ompA family protein [Burkholderia pseudomallei 1710b] Length = 290 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 183 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 237 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 238 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 290 >gi|304392317|ref|ZP_07374258.1| OmpA/MotB [Ahrensia sp. R2A130] gi|303295421|gb|EFL89780.1| OmpA/MotB [Ahrensia sp. R2A130] Length = 567 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL----AHSTEVISI-RGHTDASPFRNIARDNWRLSLDR 291 F+ S+ P + L+++G L + + + GHTDA N LS R Sbjct: 454 FNTGSASVTPSQVDKLEELGIALERHIKANPRAVFLMEGHTDAV---GSDVSNLTLSDRR 510 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A + ++L+++ G+ LK+ ++ N+ NRR+ + Sbjct: 511 AETVARILIENFAVPAENIVTQGYGESDLKVRTEAANADNRRVTV 555 >gi|255280230|ref|ZP_05344785.1| OmpA family protein [Bryantella formatexigens DSM 14469] gi|255269321|gb|EET62526.1| OmpA family protein [Bryantella formatexigens DSM 14469] Length = 319 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 119/342 (34%), Gaps = 64/342 (18%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 ++++ D++ N W+ Y+D M ++ F+++ ++ +A Y Sbjct: 1 MRRRREKDNSGFN--VWR-SYSDMMAGVLLLFVLIMCVSL-----FQAQVNY-------- 44 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 E + ER + L + + TK + + +Q+ Q + + S Sbjct: 45 ---------EASIKERDEK----LYLQDEYTKKIMSQEDQMADQQNQLASQDELLA--SQ 89 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 + K L +E+ D + + + L + + + ++ + Sbjct: 90 DELLAAQKAQLDALAEQLATQQSQLDEQSATLASQQSALDEKTTQLADQQAQIDKIIGVK 149 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + L A+N + V + T ++ ++ +FD + E VL + Sbjct: 150 ADVIEALKQEFANNNIS-VEIDETTGSLV-----MDSSVLFDYDETELTEEGQEVLGNVL 203 Query: 257 E----VLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 VL I I G+TD+ N LS R+ + + L+ G+S+ Sbjct: 204 PIYCSVLMQEEYFPYLAEIIIDGYTDS---SGGYEYNLELSQRRSLAVAEYLL--GISQS 258 Query: 308 RISK-----------ISGFAHHRLKIASD--PMNSANRRIDI 336 + ++G + L + + A+RR+++ Sbjct: 259 FLDADDQDALKEKLTVNGHSSSNLVLNENGEEDADASRRVEV 300 >gi|212712403|ref|ZP_03320531.1| hypothetical protein PROVALCAL_03491 [Providencia alcalifaciens DSM 30120] gi|212685149|gb|EEB44677.1| hypothetical protein PROVALCAL_03491 [Providencia alcalifaciens DSM 30120] Length = 582 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 227 SIIDQRNTPMFDKSSSIP-LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 ++ + +FD T V++ + + A +I + G+TD + N Sbjct: 442 QMVTLDSLSLFDVGQYTLKTGATKVLVDALLNIKAKPGWLIMVSGYTDNT---GNPELNQ 498 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LSL RA S ++++ + G+ + + + NRR++I + + Sbjct: 499 TLSLKRAESVRDWMIQTSDISPICFAVQGYGQNNPVADNRTADGRTRNRRVEIRLIPQ 556 >gi|37704636|gb|AAR01590.1| OprF [Pseudomonas sp. MFY80] gi|37704642|gb|AAR01593.1| OprF [Pseudomonas sp. MFY106] gi|37704646|gb|AAR01595.1| OprF [Pseudomonas sp. MFY116] gi|37704648|gb|AAR01596.1| OprF [Pseudomonas sp. MFY122] Length = 316 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316 >gi|89073281|ref|ZP_01159811.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34] gi|89050991|gb|EAR56455.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34] Length = 326 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 15/135 (11%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 + + I + T + +++ F SS + L + L Sbjct: 188 IKETINVNQVTIVTLEELRLTVP-------FAFDSSTITTDDAAKLAPFEQRLKEQDTAK 240 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS 324 I + GHTD+ R N LS RA + L + + RI G ++ Sbjct: 241 IYVVGHTDS---RGSESYNQTLSEKRAEAVADTLRQHLNLDSSRIIA-QGRGESDPVASN 296 Query: 325 DPMNSA--NRRIDIL 337 + NRR+DI+ Sbjct: 297 QTEDGRSQNRRVDII 311 >gi|28898164|ref|NP_797769.1| hypothetical protein VP1390 [Vibrio parahaemolyticus RIMD 2210633] gi|260366463|ref|ZP_05778902.1| OmpA family protein [Vibrio parahaemolyticus K5030] gi|260878509|ref|ZP_05890864.1| OmpA family protein [Vibrio parahaemolyticus AN-5034] gi|260897090|ref|ZP_05905586.1| OmpA family protein [Vibrio parahaemolyticus Peru-466] gi|28806378|dbj|BAC59653.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087682|gb|EFO37377.1| OmpA family protein [Vibrio parahaemolyticus Peru-466] gi|308091128|gb|EFO40823.1| OmpA family protein [Vibrio parahaemolyticus AN-5034] gi|308113073|gb|EFO50613.1| OmpA family protein [Vibrio parahaemolyticus K5030] Length = 1580 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 31/206 (15%) Query: 148 TRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 + + K E+ + +L + K ++ +L+ K Sbjct: 531 NKAKQLVNQNKKVDKAEQGTEEVTKDYLAQIPVWKTANHIQEDKLEQALKDARDQ----- 585 Query: 208 ADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPE---TIVVLQKIGEVLAHST 263 + N + +L ++R GI I F+ + + VL Sbjct: 586 SGNQIDAILVNSSRGAGIKIEFA-------FNSREKELKDHASIFKQLAASLANVLEDEP 638 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 + I GH + N ++S +RA A ++LMK V + R+ I+ F + Sbjct: 639 NLRVEIEGHACQV---GTEKANMQVSAERAEYAKKLLMKEFPVFDGRV-SIAAFGESKPV 694 Query: 322 ---------IASDPMNSANRRIDILV 338 ++P NRR+ I + Sbjct: 695 YVPKQGEKVDRNNPNLRQNRRVVIRI 720 >gi|330864159|emb|CBX74225.1| hypothetical protein YEW_BY08350 [Yersinia enterocolitica W22703] Length = 206 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL----AHSTEVISIRGHTDASPFRNIARDNWR 286 + PMFD +S P + + +L H + I GH+D + A N Sbjct: 87 TQMAPMFDSNSIKLKPNAQTN-ETLASLLLLVEQHQGRKVLIIGHSDNT---GSASFNMT 142 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVED 340 +S RA L+K+ I G ++D NRR+++L+ Sbjct: 143 ISEQRAVVVRDWLIKNSALAKEDFIIRGMGALEPVASNDTPAGQDQNRRVEVLLLP 198 >gi|52842260|ref|YP_096059.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294942|ref|YP_127357.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella pneumophila str. Lens] gi|54297971|ref|YP_124340.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella pneumophila str. Paris] gi|148359617|ref|YP_001250824.1| peptidoglycan-associated lipoprotein [Legionella pneumophila str. Corby] gi|296107659|ref|YP_003619360.1| Peptidoglycan-associated lipoprotein precursor [Legionella pneumophila 2300/99 Alcoy] gi|129597|sp|P26493|PAL_LEGPN RecName: Full=Peptidoglycan-associated lipoprotein; AltName: Full=19 kDa surface antigen; AltName: Full=PPL; Flags: Precursor gi|44129|emb|CAA43033.1| lipoprotein antigen [Legionella pneumophila] gi|52629371|gb|AAU28112.1| peptidoglycan associated lipoprotein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751756|emb|CAH13178.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella pneumophila str. Paris] gi|53754774|emb|CAH16261.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella pneumophila str. Lens] gi|148281390|gb|ABQ55478.1| Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella pneumophila str. Corby] gi|295649561|gb|ADG25408.1| Peptidoglycan-associated lipoprotein precursor [Legionella pneumophila 2300/99 Alcoy] gi|307610774|emb|CBX00386.1| peptidoglycan-associated lipoprotein precursor [Legionella pneumophila 130b] Length = 176 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S + + + E L + I GHTD R N L RA + Sbjct: 71 LFAYDDSTLASKYLPSVNAQAEYLKTHPGARVMIAGHTDE---RGSREYNVALGERRADT 127 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 ++L +GVS +I ++ + R + ++ NRR++ + Sbjct: 128 VAEILRMAGVSRQQI-RVVSYGKERPANYGHDEASHAQNRRVEFI 171 >gi|225075662|ref|ZP_03718861.1| hypothetical protein NEIFLAOT_00678 [Neisseria flavescens NRL30031/H210] gi|224953084|gb|EEG34293.1| hypothetical protein NEIFLAOT_00678 [Neisseria flavescens NRL30031/H210] Length = 219 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 6/118 (5%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHT 272 E R G I ++ N F S+ L + L + ++I GHT Sbjct: 106 NTNIEVERQGNQIKLVMPENVT-FATGSAALSGHAQSALSAAAQTLVQYPDTTLTINGHT 164 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 D + N LS +RA S L GVS R+ G+ + ++ + Sbjct: 165 DNT---GNDAINEPLSRNRAESVAIFLQSRGVSSTRL-STFGYGSRQPIASNATVEGR 218 >gi|190575561|ref|YP_001973406.1| putative peptidoglycan-associated lipoprotein [Stenotrophomonas maltophilia K279a] gi|254523725|ref|ZP_05135780.1| PAL family outer membrane lipoprotein [Stenotrophomonas sp. SKA14] gi|190013483|emb|CAQ47118.1| putative peptidoglycan-associated lipoprotein [Stenotrophomonas maltophilia K279a] gi|219721316|gb|EED39841.1| PAL family outer membrane lipoprotein [Stenotrophomonas sp. SKA14] Length = 172 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L I+++GHTD R N L R Sbjct: 69 FDLDKEDVKPEFQAIMACHAKYLRDRPSSRITLQGHTDE---RGSRAYNQALGERRGNGV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L +G S +++ +S + R +++ S NRR++I+ Sbjct: 126 NSALQANGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168 >gi|194366890|ref|YP_002029500.1| peptidoglycan-associated lipoprotein [Stenotrophomonas maltophilia R551-3] gi|194349694|gb|ACF52817.1| peptidoglycan-associated lipoprotein [Stenotrophomonas maltophilia R551-3] Length = 172 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L I+++GHTD R N L R Sbjct: 69 FDLDKEDVKPEFQAIMACHAKYLRDRPSSRITLQGHTDE---RGSRAYNQALGERRGNGV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L +G S +++ +S + R +++ S NRR++I+ Sbjct: 126 NSALQANGGSASQLTVVS-YGEERPVCTESNESCWSQNRRVEIV 168 >gi|99080027|ref|YP_612181.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99036307|gb|ABF62919.1| OmpA/MotB [Ruegeria sp. TM1040] Length = 192 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + S LQ+ + + T + GHTD+ R N LS RA + Sbjct: 91 FFPTNGSTVNAAGRKRLQEWFQSVMPGTRSFVVAGHTDS---RASDEYNMALSQRRADAV 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 Q+ G RI + + ++ + + NRR++I Sbjct: 148 AQIGRSVG---ARIKDVRAYGERSPRVPNRGAANLAQNRRVEI 187 >gi|291442513|ref|ZP_06581903.1| secreted protein [Streptomyces ghanaensis ATCC 14672] gi|291345408|gb|EFE72364.1| secreted protein [Streptomyces ghanaensis ATCC 14672] Length = 208 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 14/114 (12%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLS 288 + + +F K S + I + + + + G TD LS Sbjct: 91 ELQAAVLFAKDSGRLSDSARSRIAAIAREIEQRAATRVRVTGFTDNLGSSVHGDI---LS 147 Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDPMNSA--NRRIDI 336 RA + VL + R ++ GF R ++ S NRR++I Sbjct: 148 TQRADAVRDVLT----DDLRSEAVTFETHGFGERRPVASNATEASRRENRRVEI 197 >gi|261380050|ref|ZP_05984623.1| OmpA family protein [Neisseria subflava NJ9703] gi|284797260|gb|EFC52607.1| OmpA family protein [Neisseria subflava NJ9703] Length = 253 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE L + + L S + + + GHTD F + N LS RA Sbjct: 91 LFGFDKDNLRPEAQENLNALAQRLSNESVQTVRVEGHTD---FMGSEQYNQALSERRANV 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV+ +IS + G + Sbjct: 148 VANYLVGRGVASSKISAV-GLGESQ 171 >gi|46812309|gb|AAT02227.1| outer membrane protein A precursor [Shigella boydii] Length = 346 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 275 ERRAQSVVDYLISKGIPVDKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 338 VE 339 V+ Sbjct: 334 VK 335 >gi|86747447|ref|YP_483943.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86570475|gb|ABD05032.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 651 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S P+ LQ I + L + + I GHTDA DN LS R Sbjct: 525 FETGSWDIPPDQAAKLQVIADGLNRAIQRNPREVFLIEGHTDAV---GNDTDNLSLSDRR 581 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA +L + GV + ++ G+ LK+ +D NRR+ + Sbjct: 582 AESAATLLTQQFGVPAENLTS-QGYGEQYLKVPTDGPERQNRRVTV 626 >gi|37704638|gb|AAR01591.1| OprF [Pseudomonas sp. MFY81] gi|37704640|gb|AAR01592.1| OprF [Pseudomonas sp. MFY82] Length = 316 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316 >gi|332306543|ref|YP_004434394.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173872|gb|AEE23126.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 366 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 8/104 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +SS +Q+ + + I G+ A + N +LS++RA + Sbjct: 254 LFDNNSSKLKNIDSASVQEFVDFMRRYGSTDAVIEGYASA---PGTEQYNMKLSVERAEA 310 Query: 295 AYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335 Q L++ + R+ + G+ +L ++ + NRRI+ Sbjct: 311 VRQYLVEQYNIDSARLEAV-GYGETKLLDKANTREAHQKNRRIE 353 >gi|312884808|ref|ZP_07744500.1| hypothetical protein VIBC2010_03887 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367460|gb|EFP95020.1| hypothetical protein VIBC2010_03887 [Vibrio caribbenthicus ATCC BAA-2122] Length = 266 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 7/109 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293 F S E L + + I + G++D+ + N +LS RA Sbjct: 151 FFASGKSSLSSEQRETLSAFYSYIKVADNINRILVDGYSDS---AGSSVVNLQLSRQRAQ 207 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 +A L G E + ++ L + + + NRR+ + + + Sbjct: 208 AAADYLQFLGT-EQNLIEVRAHGERYLFNNNASNSGAKNRRVTLRLVRQ 255 >gi|239934074|ref|ZP_04691027.1| secreted protein [Streptomyces ghanaensis ATCC 14672] Length = 205 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 14/114 (12%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLS 288 + + +F K S + I + + + + G TD LS Sbjct: 88 ELQAAVLFAKDSGRLSDSARSRIAAIAREIEQRAATRVRVTGFTDNLGSSVHGDI---LS 144 Query: 289 LDRAYSAYQVLMKSGVSEDRISKIS----GFAHHRLKIASDPMNSA--NRRIDI 336 RA + VL + R ++ GF R ++ S NRR++I Sbjct: 145 TQRADAVRDVLT----DDLRSEAVTFETHGFGERRPVASNATEASRRENRRVEI 194 >gi|163802824|ref|ZP_02196713.1| sodium-type flagellar protein MotY [Vibrio sp. AND4] gi|159173364|gb|EDP58187.1| sodium-type flagellar protein MotY [Vibrio sp. AND4] Length = 293 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ +++ LS RA S Sbjct: 187 YERQGDQLTKTSKKRLAQIADYVRHNQDIDLVLVSTYTDSTDGKSTSQN---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+SEDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LRTYFESLGLSEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292 >gi|114776804|ref|ZP_01451847.1| hypothetical protein SPV1_11331 [Mariprofundus ferrooxydans PV-1] gi|114552890|gb|EAU55321.1| hypothetical protein SPV1_11331 [Mariprofundus ferrooxydans PV-1] Length = 219 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 28/212 (13%) Query: 147 LTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 L + G L S + P + + + + + +++ + L Sbjct: 12 LFDANPDGTPLHSSAPQTVQNQQAAPVSHTPSIDDGKTNDELRAQNDAMKQELKAAEDEL 71 Query: 207 VADNIVKG----VLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + + E IS F + P+T VL I Sbjct: 72 ARLQKISHKALPAMLEPHDRLWARIS---------FKSGQTSVEPKTRKVLTAIAGKFLA 122 Query: 262 STEV--ISIRGHTDASPFRNIARDNW---------RLSLDRAYSAYQVLMKSGVSEDRIS 310 + IRG++D P + L+ RA + V++ +G+ + + Sbjct: 123 HPGKMHLEIRGYSDDEPIGGYKHSHKPRHNLKSLQALTQARADAVAAVMIDAGIPQTLVH 182 Query: 311 KISGFAHHRLKIASDP--MNSANRRIDILVED 340 +G ++ S NRR+DI + Sbjct: 183 A-TGMGATGFISDNNTAEGRSKNRRVDIHLVT 213 >gi|329948277|ref|ZP_08295121.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522801|gb|EGF49909.1| OmpA family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 490 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 255 IGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISK 311 + ++ ++I GHTD N LS RA + L + +G+ + Sbjct: 202 VAGQISQYPDGGTLTIVGHTDDVQ---DDAYNQALSEKRANAVKTRLEQLTGLDKWN-PS 257 Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 ++G +++ +D +ANRR++I + G Sbjct: 258 VAGKGESEPRVSGTTDEARAANRRVEITLTPTGG 291 >gi|37704658|gb|AAR01601.1| OprF [Pseudomonas sp. MFY152] gi|37704674|gb|AAR01609.1| OprF [Pseudomonas sp. MFY314] Length = 316 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316 >gi|27382260|ref|NP_773789.1| peptidoglycan-associated lipoprotein [Bradyrhizobium japonicum USDA 110] gi|27355431|dbj|BAC52414.1| peptidoglycan-associated lipoprotein [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ IV L+K + L +I GH D R N L R Sbjct: 54 DRVFFESDQTDLTPQAIVTLEKQAQWLQTYPRYSFTIEGHADE---RGTREYNIALGARR 110 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G+ +R+ IS + R + ++ S NRR Sbjct: 111 AQSVRSFLASRGIDANRMRTIS-YGKERPVAVCNDISCWSQNRR 153 >gi|86132374|ref|ZP_01050968.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85816935|gb|EAQ38119.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 650 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P+ + L+K+ V+ VI +R HTD+ R N LS RA S Sbjct: 542 FDFDRFNIRPDAALELEKVLAVMREYPNMVIDVRSHTDS---RGNDSYNLSLSDKRAKST 598 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 ++ G+S RIS G+ +L S+ + NRR + +V Sbjct: 599 VNYIIAEGISSSRISG-RGYGETQLTNECSNGVQCSEEAHQLNRRSEFIV 647 >gi|148980294|ref|ZP_01815981.1| putative sodium-type flagellar protein MotY precursor [Vibrionales bacterium SWAT-3] gi|145961313|gb|EDK26623.1| putative sodium-type flagellar protein MotY precursor [Vibrionales bacterium SWAT-3] Length = 299 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + + + I ++ + I I G+TD + N +LS R Sbjct: 195 FQQGAVDLTEGQKRTINDISTLVKRDSRIIKILIDGYTDN---SGDSVANLQLSKQRGSD 251 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 Q M +GVS ++ +I G K + NRR++I + + Sbjct: 252 VAQWFMGNGVS-KQMIEIRGHGDRYPKYDNTTQQGRDKNRRVEIRLVRK 299 >gi|84393843|ref|ZP_00992588.1| putative outer membrane protein [Vibrio splendidus 12B01] gi|84375538|gb|EAP92440.1| putative outer membrane protein [Vibrio splendidus 12B01] Length = 203 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P + + E L + I I+G+ AS + N LS RA + Sbjct: 83 LFAHDSFEVNPIFSDQISTMAEFLETYKSASIEIQGY--ASKVGSNEY-NLDLSKRRANN 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 L+ +G+ +R+ +I G+ RL+ D ++ NR++ Sbjct: 140 VQDELLSNGIEPERV-RIVGYGEERLENEGDDATSHALNRKVT 181 >gi|294624487|ref|ZP_06703170.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601217|gb|EFF45271.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 400 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T G LI++ D +FD S + VL +G L T + +RGHTDA + Sbjct: 280 TPCGYLITLND---RILFDFDKSDIRADAARVLDTLGAALTKVTAKDMQVRGHTDA---K 333 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331 N LS RA + + + G + + +P N Sbjct: 334 GSDDYNQALSERRANAVLA--ALRARGAAQSANAKGDGESQPVAPNTVNRQDNPGGRQLN 391 Query: 332 RRIDILVED 340 RR++I + Sbjct: 392 RRVEIFLRT 400 >gi|260901886|ref|ZP_05910281.1| OmpA family protein [Vibrio parahaemolyticus AQ4037] gi|308108170|gb|EFO45710.1| OmpA family protein [Vibrio parahaemolyticus AQ4037] Length = 1580 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 31/199 (15%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 K E+ + +L + K ++ +L+ K + N + Sbjct: 538 NQNKKVDKAEQGTEEVTKDYLAQIPVWKTANHIQEDKLEQALKDARDQ-----SGNQIDA 592 Query: 215 VLFETTRT-GILISIIDQRNTPMFDKSSSIPLPE---TIVVLQKIGEVLAHSTE-VISIR 269 +L ++R GI I F+ + + VL + I Sbjct: 593 ILVNSSRGAGIKIEFA-------FNSREKELKDHASIFKQLAASLANVLEDEPNLRVEIE 645 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK------- 321 GH + N ++S +RA A ++LMK V + R+ I+ F + Sbjct: 646 GHACQV---GTEKANMQVSAERAEYAKKLLMKEFPVFDGRV-SIAAFGESKPVYVPKQGE 701 Query: 322 --IASDPMNSANRRIDILV 338 ++P NRR+ I + Sbjct: 702 KVDRNNPNLRQNRRVVIRI 720 >gi|268679844|ref|YP_003304275.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617875|gb|ACZ12240.1| OmpA/MotB domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 385 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 116/365 (31%), Gaps = 59/365 (16%) Query: 33 WKIVYADFMTVLMAFFLVM---------WIIN----------------ATDDDTKKAIEQ 67 W + YAD M L+ F+++ + + ++ ++ Sbjct: 14 W-VSYADLMAGLLFVFILLIGAIIIKYVYAQSDLSAIKTDLDAQKKALVMSEEELAQKKR 72 Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRL 127 L+ + + + R + L D +++ S+ +K + Sbjct: 73 DVARISDKLIASEQKTLELTTLQARLQEELSKLKSDVILSEESLLAARALLAEKGKALEE 132 Query: 128 ENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK 187 + LS + + L ++E+ + + ++ N + +L+ K Sbjct: 133 NDAKLELSAKEIESLKRLLLEVENERDESKGALMVTQNELSNTSNTLKLKQGELALLSQK 192 Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT-----GILISI------IDQRNTPM 236 + + V + G+ + + G I+I I + + Sbjct: 193 LLDTSTAHQRLVEDLNITKVRIKNLTGIRIKVVQELKSKLGQKINIDPNSGAIRLPSGIL 252 Query: 237 FDKSSSIPLPETIVVLQK-----IGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWR 286 FD S PE L++ + +L + I I GHTD+ +N Sbjct: 253 FDVGSYELKPEAKKQLKETLQPYLEVLLNDADIRDNIDHIMIEGHTDS---DGSYMNNLD 309 Query: 287 LSLDRAYSAYQVL----MKSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDI--LV 338 LS RAY+ + R G ++ K + N++ RRI+I + Sbjct: 310 LSQKRAYAVMAFIYSWDESKNALLQRYISAIGRSYSDRIFKNGLEDKNAS-RRIEIKFSL 368 Query: 339 EDRQG 343 +++ Sbjct: 369 SNKKA 373 >gi|167719458|ref|ZP_02402694.1| ompA family protein [Burkholderia pseudomallei DM98] Length = 277 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 170 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 224 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277 >gi|90421593|ref|YP_529963.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90103607|gb|ABD85644.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 617 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 F+ S P+ LQ I + +A + + I GHTDA DN LS R Sbjct: 491 FELGSWEIPPDQAAKLQAIADGLNKSIARNPREVFLIEGHTDAV---GNDTDNLSLSDRR 547 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A +A Q+L + GV + ++ G+ LK+ + NRR+ + Sbjct: 548 AEAAAQLLTQQFGVPAENLTS-QGYGEQYLKVPTQAPERQNRRVTV 592 >gi|302558689|ref|ZP_07311031.1| secreted protein [Streptomyces griseoflavus Tu4000] gi|302476307|gb|EFL39400.1| secreted protein [Streptomyces griseoflavus Tu4000] Length = 215 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 19/195 (9%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 ++ ++ G + T+ S E + P L + + K L I + Sbjct: 30 GAVVAHADDGPGVPPGTEASASAPVEVDPNDPDLKLPEGATLTEPKVLD-----IKQIVE 84 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263 D + + T + +F K S+ E + I + + Sbjct: 85 DKSGDERREDTNSDVT--------FALQAEVLFGKDSAKLGAEAKARIATIAGEIKTQNA 136 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + G TD + D LS RA + VL + + ++ G+ Sbjct: 137 TKVRVFGFTDNL-GSSAHGDV--LSRQRANAVQAVLGRELSDANITYEVRGYGEQYPIAD 193 Query: 324 SDPMNSA--NRRIDI 336 + NRR++I Sbjct: 194 NSTEAGRKKNRRVEI 208 >gi|116623181|ref|YP_825337.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116226343|gb|ABJ85052.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 911 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLS 288 D F+ +SSI + L ++ ++L+ H + + GHTD + A N +L+ Sbjct: 30 DDWEEINFEFNSSILS-DGYPSLLRLADLLSQHRDYKVKVTGHTD---YVGSAAYNDKLA 85 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 L RA + L+K GV + +++ SG + + NRR+D+ V D G Sbjct: 86 LRRADAVKAFLVKYGVGDAQVT-TSGDGKRSPIVDNKTKEGRFMNRRVDLAVTDGSG 141 >gi|237730913|ref|ZP_04561394.1| outer membrane protein A [Citrobacter sp. 30_2] gi|226906452|gb|EEH92370.1| outer membrane protein A [Citrobacter sp. 30_2] Length = 356 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 228 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 284 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ D+IS G + D + + +RR++I Sbjct: 285 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 343 Query: 338 VE 339 V+ Sbjct: 344 VK 345 >gi|187736002|ref|YP_001878114.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187426054|gb|ACD05333.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 478 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 80/253 (31%), Gaps = 30/253 (11%) Query: 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKD 156 +L E + V + G T+ Q + + + Sbjct: 116 PPELPDLEDMLPEQVVIAPGETSFSADPVSPSPPESLSPKMPQVDMNAVAKGLPEPSPPE 175 Query: 157 LCKSTDLEKSINKEENYFLPPLS----KEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 + KS+ +I E + P K K + L D +K +S ++ Sbjct: 176 MLKSSASPVTIKTAEPDMVNPDEWYNNKLKGAGGQDDSHLPDGSKSLSQLMAQSSLGKDS 235 Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGH 271 +F+ + ++ + + ++ ++ + + I + GH Sbjct: 236 GYSRL--------------GADLLFEYNKAVMKNSARLSMLQLAGLMMKNPDTIFIVEGH 281 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-----ISKISGFAHHRLKIA--- 323 TD+ N LSL RA + Q L +G++ R I R ++ Sbjct: 282 TDSF---GSEEYNAVLSLMRANAVRQWLKDNGIALTRPNGECRLYIRACGSSRPVVSIRG 338 Query: 324 SDPMNSANRRIDI 336 +ANRR++I Sbjct: 339 DRDAQAANRRVEI 351 >gi|110678461|ref|YP_681468.1| OmpA family domain-containing protein [Roseobacter denitrificans OCh 114] gi|109454577|gb|ABG30782.1| OmpA family domain protein [Roseobacter denitrificans OCh 114] Length = 221 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S+ E + +I E L + + + G TDA + ++ +L L RA + Sbjct: 27 FDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVLIGFTDA--VGGVGYND-QLGLRRANA 83 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L++ GVS DRI +S L ++ NRR+ + + Sbjct: 84 VSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLNRRVTVTL 127 >gi|84500462|ref|ZP_00998711.1| OmpA domain protein [Oceanicola batsensis HTCC2597] gi|84391415|gb|EAQ03747.1| OmpA domain protein [Oceanicola batsensis HTCC2597] Length = 309 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ L ++ + I ++ GHTDA N LS RA + Sbjct: 204 FQSGAAALADREYTSLAELAVYIKGDPARIVALVGHTDAV---GAHDANVALSRRRAEAV 260 Query: 296 YQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339 Q L+ GV+ ++S + +GF + NRR++ ++ Sbjct: 261 RQRLIDRHGVAGSQVSARGAGFLAPVASNLTALGRERNRRVEAVLL 306 >gi|296156854|ref|ZP_06839691.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. Ch1-1] gi|295892740|gb|EFG72521.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. Ch1-1] Length = 558 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 + F S+ P++ L + L + I G+TD+ N +L+ Sbjct: 453 QTAVFFAVGSASLDPQSAEALAGVARRLLAAPGSRAVISGYTDS---SGTYEANVKLAAA 509 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 RA + L+ +GV +++I R+ + P S RR+D+ + G Sbjct: 510 RAATVRSALVVAGVD---VARIDMRRPARIVASDAPDRS--RRVDVTLAPSTG 557 >gi|254564208|ref|YP_003071303.1| Outer membrane lipoprotein omp16 [Methylobacterium extorquens DM4] gi|254271486|emb|CAX27501.1| Outer membrane lipoprotein omp16 precursor [Methylobacterium extorquens DM4] Length = 170 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 8/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 +++ + F+ S+ P L K L I GH D R Sbjct: 55 VVNIGDRVFFESDSTDLTPTATATLDKQASWLQRYPRYSFLIEGHADERGTREYNYS--- 111 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337 L RA + L G+S R+ +S + R + ++ S NRR + +L Sbjct: 112 LGARRAQTVQDYLASRGISASRMRTVS-YGKERPVAVCNDISCWSQNRRSVSVL 164 >gi|83312309|ref|YP_422573.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] gi|82947150|dbj|BAE52014.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Magnetospirillum magneticum AMB-1] Length = 161 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD S + L K L +++ GH D R N L R Sbjct: 56 DRVFFDFDKSSLRADAKATLDKQAAWLKAYPNYSLTVEGHADE---RGTREYNLALGEKR 112 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A + L +G++ R+ +S G +++ S NRR Sbjct: 113 ANAVASYLKSAGIAAARVKTVSYGKERPVALGSNEAAWSQNRR 155 >gi|255067169|ref|ZP_05319024.1| OmpA family protein [Neisseria sicca ATCC 29256] gi|255048537|gb|EET44001.1| OmpA family protein [Neisseria sicca ATCC 29256] Length = 253 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F I PE L + + L + + + I GHTD F N LS RA Sbjct: 91 LFGFDKDILRPEAQENLNSLAQRLSNENVQTVRIEGHTD---FMGSEEYNQNLSERRANV 147 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV ++S +G + Sbjct: 148 VANYLVGRGVPSSKVSA-TGLGESQ 171 >gi|77361038|ref|YP_340613.1| component of sodium-driven polar flagellar motor [Pseudoalteromonas haloplanktis TAC125] gi|76875949|emb|CAI87171.1| putative Component of sodium-driven polar flagellar motor [Pseudoalteromonas haloplanktis TAC125] Length = 292 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 9/117 (7%) Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283 S D T M + +SS + L KI E L + E I+I +TD+ + Sbjct: 177 SFEDISFTVMNYQSNSSKLTKSSQQRLDKIAEYLKNDPSIESINIASYTDSY---GGRWN 233 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N LS RA + ++ GV E ++ G R +D + NRR+ I + Sbjct: 234 NLDLSKTRAKAIKDYMISLGVDETKVH-TDGLGEKRFVDTNDTILGRNKNRRLVIQI 289 >gi|331007788|ref|ZP_08330902.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma proteobacterium IMCC1989] gi|330418397|gb|EGG92949.1| 18K peptidoglycan-associated outer membrane lipoprotein [gamma proteobacterium IMCC1989] Length = 171 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD SS ++ +L L + + GH D R N L RA S Sbjct: 74 FDFDSSALRADSRSLLDAHAAALKAKPRAVRLEGHADE---RGTREYNIALGERRAQSVR 130 Query: 297 QVLMKSGVSEDRISKISGFAHHRL-KIASDPMN-SANRRIDI 336 L+ GV+ ++ + + AS+ NRR++I Sbjct: 131 AYLLSRGVTSP--IEVISYGEEKPAANASNDYAWQQNRRVEI 170 >gi|144897998|emb|CAM74862.1| conserved hypothetical protein, secreted [Magnetospirillum gryphiswaldense MSR-1] Length = 198 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE+ +L + + + +SI GHTD A+ N+ L L RA Sbjct: 97 FQFQSTDLTPESKALLPSVLDEVKARPAPDLSIIGHTDGM---GDAKYNYELGLRRAKEV 153 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 ++ G+ R+ +++ + + NRR+++ V Sbjct: 154 QSMVTALGIEP-RMIEVTSHGQSNPLVPEAKGKGEAKNRRVEVTV 197 >gi|94495568|ref|ZP_01302148.1| hypothetical protein SKA58_05950 [Sphingomonas sp. SKA58] gi|94424956|gb|EAT09977.1| hypothetical protein SKA58_05950 [Sphingomonas sp. SKA58] Length = 290 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 77/264 (29%), Gaps = 18/264 (6%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P + S+ K S Q Q + + + Sbjct: 32 PADLSATITEPEPAPAEAVKGPTIEGFISARSGDQMQVTGEDGANNVVAIGEATVVRASG 91 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 G++ L + + ++A + + +DL K +S + A Sbjct: 92 GFLGLGRETLGPDALLNGLPVSVETVQGA---QGLVATRIALKNKDL--KTASMIRNGTA 146 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHST 263 + G ++ IDQ N FD + P+ L Sbjct: 147 QGFAEQSAATEALRG-RVADIDQYNVKATTNVNFDTGKTALSPQAKSDLCATAASAEQMD 205 Query: 264 EVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 + + G+TD++ N LS RA L + R+ +G + + Sbjct: 206 NALLLVVGYTDST---GPEEYNQMLSEKRAGRVVNYLQQHCNWKPYRMLTPTGMSEAQPI 262 Query: 322 IASDPMN--SANRRIDILVEDRQG 343 ++D + NRR+ + + +G Sbjct: 263 ASNDTEQGKAENRRVSVNILVSKG 286 >gi|90419554|ref|ZP_01227464.1| conserved hypothetical protein, OmpA family [Aurantimonas manganoxydans SI85-9A1] gi|90336491|gb|EAS50232.1| conserved hypothetical protein, OmpA family [Aurantimonas manganoxydans SI85-9A1] Length = 388 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPE----TIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S+ E + I V+A + + I GHTDA R N LS R Sbjct: 272 FNFGSAEITQEEVGDLRALADAIARVIAENPDETFLIEGHTDAV---GSERANLALSDRR 328 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A L + V + + G+ LK+ + N NRR+ + Sbjct: 329 ADGVATALTQYFDVPPENLV-TQGYGEQDLKVDTQAENRENRRVTV 373 >gi|325105157|ref|YP_004274811.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324974005|gb|ADY52989.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 587 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 12/111 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D S P+ ++L + ++ + I + HTD R N LS RA SA Sbjct: 477 YDFDKSNIRPDAALILDNVVSIMKQNPSLKIELSSHTDC---RGNNAYNLILSDARARSA 533 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 ++++G+ ++R+ G+ +L S+ + NRR ++ V Sbjct: 534 VAYIVRNGIEKNRLVA-KGYGETKLLNNCYDGVRCSEVEHQRNRRTELRVL 583 >gi|309789305|ref|ZP_07683896.1| chemotaxis motB domain protein [Shigella dysenteriae 1617] gi|308922840|gb|EFP68356.1| chemotaxis motB domain protein [Shigella dysenteriae 1617] Length = 111 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%) Query: 41 MTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDL 100 MT +MAFFLVMW+I+ + I +YF +T I + ++P + Sbjct: 1 MTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQS 60 Query: 101 SIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQ 138 + + N +LK + + R + + S+ + Sbjct: 61 QGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPK 98 >gi|306844687|ref|ZP_07477272.1| peptidoglycan-associated lipoprotein [Brucella sp. BO1] gi|306274859|gb|EFM56629.1| peptidoglycan-associated lipoprotein [Brucella sp. BO1] Length = 168 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D + S NRR + V + G Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADSCWSQNRR-AVTVLNGAG 167 >gi|167894145|ref|ZP_02481547.1| ompA family protein [Burkholderia pseudomallei 7894] Length = 277 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 170 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 224 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277 >gi|113461178|ref|YP_719247.1| hemagglutinin antigen [Haemophilus somnus 129PT] gi|112823221|gb|ABI25310.1| hemagglutinin antigen [Haemophilus somnus 129PT] Length = 355 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE L + +A T +S+ G+TD N +LS RA + Sbjct: 242 FAFAKDTLKPEAQQTLDGVYGEIAQLKTAQVSVAGYTDRI---GSDASNLKLSQRRADTV 298 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV++D IS + G+ + + +RR++I V+ + Sbjct: 299 ANYLVSKGVAQDAISAV-GYGEANPVTGAKCDAVKGRKALIACLAEDRRVEISVKGSK 355 >gi|15805563|ref|NP_294259.1| hypothetical protein DR_0536 [Deinococcus radiodurans R1] gi|6458233|gb|AAF10120.1|AE001912_5 hypothetical protein DR_0536 [Deinococcus radiodurans R1] Length = 201 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLSLDRA 292 MF S++ PE L +VL + I I GHT S R W LS RA Sbjct: 91 MFVGESAVLTPEGETALVDFAQVLRSQKKNWKRIRIEGHTQTSRPNTPER--WDLSATRA 148 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + ++ G+S +R+ ++ N R++I+VE Q Sbjct: 149 SAVAAAFYLRGGISPNRL-AVAARGGQTPFNG-HKFAPQNERVEIVVEYAQ 197 >gi|284036645|ref|YP_003386575.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283815938|gb|ADB37776.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 322 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + + + +H + + + GHTD+ N +LS DRA L K+G+ +I + Sbjct: 238 EAVAYLSSHKDKKLVLTGHTDS---SGPDAVNMQLSRDRANDVKNKLRKTGIEASQIE-V 293 Query: 313 SGFAHHRLKIASDP--MNSANRRIDILVE 339 K + ANRR+ ++VE Sbjct: 294 RAKGETEPKADNSTISGRKANRRVSVVVE 322 >gi|153008551|ref|YP_001369766.1| peptidoglycan-associated lipoprotein [Ochrobactrum anthropi ATCC 49188] gi|151560439|gb|ABS13937.1| Peptidoglycan-associated lipoprotein [Ochrobactrum anthropi ATCC 49188] Length = 168 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I++ GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITVEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D + S NRR + V + G Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADSCWSQNRR-AVTVLNGAG 167 >gi|145299432|ref|YP_001142273.1| sodium-type polar flagellum motor protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142852204|gb|ABO90525.1| sodium-type polar flagellum motor protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 291 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +DK+S + L IGE + S +V+ I ++D+ N +LS RA + Sbjct: 184 YDKNSDQLSLASRRRLAMIGEYVKVDKSIDVVVINAYSDSY---GGRWPNQKLSEKRADA 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 +V + G+ +I + G R +++ + NRR+ I Sbjct: 241 IKKVFVDLGIDPGKI-SVEGHGEKRHATSNETEDGRAKNRRVVI 283 >gi|328473741|gb|EGF44576.1| hypothetical protein VP10329_13800 [Vibrio parahaemolyticus 10329] Length = 300 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128 Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L+ D + + +L +D + F S+ P+ + L Sbjct: 129 LDYVLTQTTCTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 182 Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + +L + + GH D N +L+ +RA + L GV+ DR+ + Sbjct: 183 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVASDRV-Q 238 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340 NRR+ I V Sbjct: 239 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 269 >gi|288926326|ref|ZP_06420250.1| OmpA family protein [Prevotella buccae D17] gi|288336931|gb|EFC75293.1| OmpA family protein [Prevotella buccae D17] Length = 684 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + ++ + PE+ L ++ ++L + V I + H D ++ N RLS R Sbjct: 516 DNIFYEFDKANLTPESTKALDELVKLLNENPNVTIELSAHCD---YKGSMEYNKRLSQRR 572 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + L+ G++ DR++ +G+ R K Sbjct: 573 AEAVVAYLVGHGIARDRLTP-AGYGKERPK 601 >gi|152980803|ref|YP_001354158.1| peptidoglycan-associated lipoprotein [Janthinobacterium sp. Marseille] gi|151280880|gb|ABR89290.1| peptidoglycan-associated lipoprotein [Janthinobacterium sp. Marseille] Length = 169 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S I PE V++ + L + I I+G+TD R A N L RA + Sbjct: 69 FDFDSYIVKPEFQQVVENHAKYLKSNQGRKIIIQGNTDD---RGGAEYNLALGQKRAEAV 125 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + L GV E ++ +S G + + + + NRR DI+ Sbjct: 126 RKSLSLLGVPETQMEAVSLGKEKPKALGSDEAAWAENRRADIV 168 >gi|37704644|gb|AAR01594.1| OprF [Pseudomonas sp. MFY107] Length = 316 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316 >gi|154247009|ref|YP_001417967.1| peptidoglycan-associated lipoprotein [Xanthobacter autotrophicus Py2] gi|154161094|gb|ABS68310.1| Peptidoglycan-associated lipoprotein [Xanthobacter autotrophicus Py2] Length = 164 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ L + + L + +I GH D R N L R Sbjct: 55 DRVFFESDQTDLTPQARATLDRQAQWLQQWNRYTFTIEGHADE---RGTREYNIALGAKR 111 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G+ R+ IS + R + ++ S NRR Sbjct: 112 AQSVRDYLAARGIDPARMRTIS-YGKERPVAVCNDISCWSQNRR 154 >gi|256421223|ref|YP_003121876.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256036131|gb|ACU59675.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 778 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 81/257 (31%), Gaps = 33/257 (12%) Query: 71 PFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENN 130 P N A D S + ++ ++ + + +R + Sbjct: 529 PVVTNPRQAVSAPIDIPGAAPTSHPAEPVVAKNDPVAAPVKEEPAKEPKSAAPVRRGPGS 588 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + + +EK+ K P E + + + Sbjct: 589 KTPAPVKKPGVKTPAVAVAAPVVTAPVTEEPVVEKTPEK-APEKTPAKPVETVAVAQPEA 647 Query: 191 RLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIV 250 R + ++ + + + ++G+ F +D +S++ ++ Sbjct: 648 RQEKEMDEMDAAI-----QHKMEGMEFY------------------YDYNSAVLTTKSRN 684 Query: 251 VLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L ++ VL + +R +TD+ R N LS R Y+ + L++ GV R+ Sbjct: 685 LLDRVAVVLNQYPDWKLLVRSYTDS---RGSDAYNKDLSALRCYAVIEYLVRKGVPSTRL 741 Query: 310 SKISGFAHHRLKIASDP 326 + + K DP Sbjct: 742 -----YYENIGKDPEDP 753 >gi|85374727|ref|YP_458789.1| hypothetical protein ELI_09500 [Erythrobacter litoralis HTCC2594] gi|84787810|gb|ABC63992.1| hypothetical protein ELI_09500 [Erythrobacter litoralis HTCC2594] Length = 170 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 14/120 (11%) Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280 G I D F+ S+ LQ + L+ V ++I GH D R Sbjct: 61 NGQNIIYFDTDR---FNIDSAD-----AAALQTQAQYLSQYPNVTVTIEGHADE---RGT 109 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338 N L RA +A L+ G+ RIS +S + AS P + NRR + +++ Sbjct: 110 RDYNLALGERRANAAKNYLVSLGIPATRISTVSYGEERPVATASTPEAWAQNRRAVTVVI 169 >gi|260914347|ref|ZP_05920816.1| outer membrane protein A [Pasteurella dagmatis ATCC 43325] gi|260631448|gb|EEX49630.1| outer membrane protein A [Pasteurella dagmatis ATCC 43325] Length = 341 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A +++ G+TD N +LS RA + Sbjct: 228 FAFDKANLKPEAQGVLDGIYGEIAQLQSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 284 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+ IS +G + + +RR++I V+ + Sbjct: 285 ANYLVSKGVAPQAISA-TGMGESSPVTGNKCDSVKGRKALIACLADDRRVEISVKGNK 341 >gi|300772832|ref|ZP_07082701.1| outer membrane protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759003|gb|EFK55830.1| outer membrane protein [Sphingobacterium spiritivorum ATCC 33861] Length = 650 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 16/129 (12%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277 + GI+ + + +D + S P+ VL ++ + + I + HTD+ Sbjct: 528 VNKEGIVFVL----DNIYYDFNKSDIRPDAAKVLDQLVNTMTENPTLQIELSSHTDS--- 580 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSA 330 R N +LS RA SA ++ G++++R+ G+ RL ++ + A Sbjct: 581 RGSDNYNMKLSDRRAKSAVDYIISKGIAKERLVS-KGYGETRLVNECANGVKCTEEQHQA 639 Query: 331 NRRIDILVE 339 NRR ++ V Sbjct: 640 NRRTEVKVL 648 >gi|254488141|ref|ZP_05101346.1| peptidoglycan-associated lipoprotein [Roseobacter sp. GAI101] gi|214045010|gb|EEB85648.1| peptidoglycan-associated lipoprotein [Roseobacter sp. GAI101] Length = 171 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F+ + S P L ++ + I GH D N L R Sbjct: 61 DRVLFEVNQSNLTPAGQATLDGQATWLITNIDYQAIIEGHADEQ---GTREYNVALGARR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ +R+ ++ + R +++ + NRR Sbjct: 118 ANAAREYLISRGVAGNRL-RVVSYGKERPIEVCSAEACYAKNRR 160 >gi|254439344|ref|ZP_05052838.1| OmpA family protein [Octadecabacter antarcticus 307] gi|198254790|gb|EDY79104.1| OmpA family protein [Octadecabacter antarcticus 307] Length = 637 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 8/151 (5%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGI-LISIIDQRNTPMFDKSSSIPLPETIV 250 ++ L + +S + + TT + I + + F+ SS+ Sbjct: 454 IEKLGEAEEFEVSVTYVEELDPIAALPTTEECLGQIMNVTESRKIRFEPSSATIAGAGAA 513 Query: 251 VLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L I E+L + I I G+TD+ N RLS RA + + L V Sbjct: 514 ILDDIKEILQRCADLRIEIAGYTDSQ---GSEDGNQRLSQQRADAVLEGLRVRRVPVASF 570 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILV 338 + G+ ++ + NRRI+ + Sbjct: 571 RSV-GYGEADPIADNETADGREANRRIEFSL 600 >gi|146337406|ref|YP_001202454.1| hypothetical protein BRADO0242 [Bradyrhizobium sp. ORS278] gi|146190212|emb|CAL74204.1| hypothetical protein BRADO0242 [Bradyrhizobium sp. ORS278] Length = 337 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 FD S P+ + LQ I + L + + I GHTDA DN LS R Sbjct: 211 FDTGSWEIAPDQVAKLQVIADGLNQAIQRNPREVYLIEGHTDAV---GNETDNLSLSDRR 267 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + GV + ++ G+ LK + + NRR+ + Sbjct: 268 AESVATLLTQQFGVPAENLTS-QGYGEQYLKEQTQGPSRINRRVTV 312 >gi|239929192|ref|ZP_04686145.1| secreted protein [Streptomyces ghanaensis ATCC 14672] Length = 195 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 19/195 (9%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + T +++ + T+ S E + P L + K L I + Sbjct: 9 GATTAYADESPSVPPGTEATASAPVELDPNDPDLKLPDGATLAEPKVLD-----IKQVVE 63 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263 D + + + +F K S+ + + I E + + Sbjct: 64 DQSGDERREDTNSDVK--------FALQAEVLFGKDSAKLGAQAKARIATIAEEIKTQNA 115 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I + G TD + D LS RA + + VL + D ++ G+ Sbjct: 116 TRIRVFGFTDNL-GSSAHGDV--LSRQRANAVHGVLEQELNDSDVTYEVRGYGEQYPIAD 172 Query: 324 SDPMNSA--NRRIDI 336 + NRR++I Sbjct: 173 NSTEAGRKKNRRVEI 187 >gi|86134634|ref|ZP_01053216.1| OmpA family protein [Polaribacter sp. MED152] gi|85821497|gb|EAQ42644.1| OmpA family protein [Polaribacter sp. MED152] Length = 527 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ--RNTP--MFDKSSSI 243 K+ K+++S+ + ++ E I++ DQ N P FD + + Sbjct: 365 SKENFHQAFKEVASSKENFIEVDL----ELEPIENNHFITVRDQVMLNIPPIYFDLAKAT 420 Query: 244 PLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + LQ + +++ ++I IR H+D+ R N RLS RA + ++ Sbjct: 421 IKKTSEQELQMVVDLMNRYPKIIVQIRAHSDS---RGNDSYNLRLSDRRAKATVNWILDK 477 Query: 303 GVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 G++++RI I GF L S+ + NRR + ++ + Sbjct: 478 GIAKNRIFGI-GFGEEDLVNECSNGVQCSEEKHLENRRTEFVILN 521 >gi|312795445|ref|YP_004028367.1| outer membrane protein [Burkholderia rhizoxinica HKI 454] gi|312167220|emb|CBW74223.1| Outer membrane protein [Burkholderia rhizoxinica HKI 454] Length = 243 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 14/113 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L + + + + G+TD + ++ LSL RA + Sbjct: 104 LFDFDKAVLKPAGKEKLDDLASKIQDLNLEVVVATGYTDK--IGSDKYND-HLSLRRAQA 160 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPMNSA--------NRRIDILV 338 L+ + +RI G + + N NRR+++ V Sbjct: 161 VKAYLVSKDIPANRIY-TEGKGKRNPVVTDCNQKNRKALIACLAPNRRVEVEV 212 >gi|237800227|ref|ZP_04588688.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806415|ref|ZP_04593119.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023084|gb|EGI03141.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027528|gb|EGI07583.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 167 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 68 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 125 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 165 >gi|161503852|ref|YP_001570964.1| outer membrane protein A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865199|gb|ABX21822.1| hypothetical protein SARI_01940 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 358 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + PE L ++ L + + + G TD + A N LS Sbjct: 230 KSDVLFTFNKDNLKPEGKQALDQLYNQLNNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 287 EKRAQSVVNYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|157736660|ref|YP_001489343.1| flagellar motor protein MotB [Arcobacter butzleri RM4018] gi|157698514|gb|ABV66674.1| flagellar motor component MotB [Arcobacter butzleri RM4018] Length = 251 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 6/197 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K W + YADF+++L+A F+ ++ + + + + +KA+++ F A Sbjct: 3 KKKCKCECPAGEKWAVPYADFLSLLLALFIALYALASINVEKQKALKEEF--MKIYNFAA 60 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S I +++ E D + + + V + N+ + N+ LS+ Sbjct: 61 SDTIKEQE---ETEKSMTTDPTNEPDEGRKPVVQPLTKQNELENKNAKGGNLLELSDGTF 117 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + + S D K + + +P ++ + + K Sbjct: 118 MSVPAHLIFESGKAELSGADSADFLKKL-AQLISAMPSDTEINVKGYAEDSEVNKSRYKD 176 Query: 200 SSTLSGLVADNIVKGVL 216 + LS A+N+++ +L Sbjct: 177 ALDLSTARANNVIRELL 193 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTEV--ISIRGHT-DASPFRNIARDNWRLSLDRA 292 F+ + ++ L+K+ ++++ I+++G+ D+ ++ +D LS RA Sbjct: 126 FESGKAELSGADSADFLKKLAQLISAMPSDTEINVKGYAEDSEVNKSRYKDALDLSTARA 185 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHR 319 + + L+K + +R+ SG+ ++ Sbjct: 186 NNVIRELLKYNIPSNRLYS-SGYGSNK 211 >gi|121604226|ref|YP_981555.1| OmpA/MotB domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593195|gb|ABM36634.1| OmpA/MotB domain protein [Polaromonas naphthalenivorans CJ2] Length = 376 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 22/119 (18%) Query: 237 FDK-SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +P P L +I L + I G+TD + N +LS RA Sbjct: 264 FDSTGLRMPQPR----LDEIAAALGSHGEVNEVVITGYTD--RIGSSQY-NQKLSERRAL 316 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA-------NRRID---ILVEDR 341 + L G+ +R+ G +A +D A NRR++ I +E R Sbjct: 317 AVKTYLTGKGIDANRLKA-QGKGEADPVVACTDKKLPALIKCLEPNRRVEVENITIERR 374 >gi|294850947|ref|ZP_06791623.1| outer membrane lipoprotein omp16 [Brucella sp. NVSL 07-0026] gi|294821590|gb|EFG38586.1| outer membrane lipoprotein omp16 [Brucella sp. NVSL 07-0026] Length = 168 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D S NRR + V + G Sbjct: 116 ATATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167 >gi|260751226|gb|ACX48919.1| cellulase [Streptomyces sp. GS11] gi|307574878|gb|ADN52664.1| cellulase [uncultured bacterium] Length = 340 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 20/146 (13%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K + + A IV V T + FD S+ + L Sbjct: 202 EKAVEEVVEARPATRIVDHVYPAQTTATVQ-----------FDLESAEVKDASN--LSGT 248 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +++ + + I G++D + A N +L+ RA + G++ +R++ + G Sbjct: 249 VDLMNTYPQAQVEITGYSDTT---GSAAYNKQLTEKRAKAVADEFQAKGIAAERMT-VKG 304 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 +++ NRR++++V Sbjct: 305 MGEANPVASNETRQGRQMNRRVEVVV 330 >gi|291615184|ref|YP_003525341.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] gi|291585296|gb|ADE12954.1| OmpA/MotB domain protein [Sideroxydans lithotrophicus ES-1] Length = 185 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 17/115 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----------TEVISIRGHTDASPFRNIARDNWR 286 F + + +K+ V+ + GHTD+ A N Sbjct: 73 FKSGTDVLEAGCGAKSKKLANVIIDVKKSLQSQGQKGFKFIVSGHTDS---SGDATKNKE 129 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMNSANRRIDILV 338 LS RA + L+ GV I + G ++ + D + NRR ++ V Sbjct: 130 LSARRARVMVKELIAQGVDAGDIEAV-GMGSEKMLVKPDNTPAKKAKNRRYEVQV 183 >gi|167845593|ref|ZP_02471101.1| ompA family protein [Burkholderia pseudomallei B7210] Length = 277 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 170 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 224 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277 >gi|126662166|ref|ZP_01733165.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] gi|126625545|gb|EAZ96234.1| outer membrane protein, peptidoglycan-associated lipoprotein [Flavobacteria bacterium BAL38] Length = 642 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 12/126 (9%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279 + G+ ++ FD S + + + V+ + + + I+ HTD+ ++ Sbjct: 518 QDGLDLAKFFSIQNIYFDLDKSEINDKAEKQIAILLYVMQKNPDIKLEIKSHTDSRASKS 577 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANR 332 N LS RA L+K+G+ RIS G+ RL S+ + NR Sbjct: 578 Y---NLELSNKRALETSNWLVKNGIDSSRISS-KGYGESRLVNHCSDGVKCSEEEHQMNR 633 Query: 333 RIDILV 338 R + +V Sbjct: 634 RSEFIV 639 >gi|37704604|gb|AAR01574.1| OprF [Pseudomonas sp. MFY32] Length = 316 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316 >gi|37704602|gb|AAR01573.1| OprF [Pseudomonas sp. MFY31] Length = 316 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316 >gi|261868250|ref|YP_003256172.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413582|gb|ACX82953.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans D11S-1] Length = 356 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + P+ L I +A + + G+TD + A N +LS RA + Sbjct: 243 FAFNKANLKPQAQKTLDGISHEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 299 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 L+ GVS+ IS +G+ + D + +RR++I V Sbjct: 300 ANYLVSKGVSQQAISA-TGYGKANPVTGNKCDTVKGRKALIACLADDRRVEIAV 352 >gi|149374319|ref|ZP_01892093.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] gi|149361022|gb|EDM49472.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] Length = 310 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (8%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLS 288 +R+ F S+ L I + + E + + GHTD+ DN LS Sbjct: 186 KRSRISFASGSTSLSDADRRFLDNIVMYIQADSTVERVFVDGHTDS---SGSRIDNRALS 242 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 +RA + L+ G+ D + A ++ P + NRR I ++ R+G Sbjct: 243 EERANAVADYLIGQGIEAD-LVTTRAHADQYP-VSRRPAD--NRRTTIRLQ-REG 292 >gi|90577944|ref|ZP_01233755.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14] gi|90441030|gb|EAS66210.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14] Length = 352 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E L+ I + L + + + GHTD+ R N +LS +RA + Sbjct: 236 FAFDSNTLTAEDQARLEPIAQRLVNFPNSELVVIGHTDS---RGSEAYNQKLSEERAKTV 292 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 LMK + R+ K G ++D + NRR+D+ Sbjct: 293 AVYLMKHFNIDASRV-KGEGRGELDPVASNDTAEGRAQNRRVDV 335 >gi|27375465|ref|NP_766994.1| hypothetical protein blr0354 [Bradyrhizobium japonicum USDA 110] gi|27348602|dbj|BAC45619.1| blr0354 [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 25/254 (9%) Query: 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSL 147 P + E + S + + + + + + KN Sbjct: 8 GGPIAGILEPRSSAAQEGLAMRSAAKGLTAILSIMAIGAALSLPASPAFAGDDGNSKNVT 67 Query: 148 TRDSEKGKDLCKSTDLEKSIN-KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL 206 + + + L + ++ + P S+ K++ R + + L+ ++ + Sbjct: 68 EDEIVRALAPPQKKPLTRGLSIAPQADPAPSASETKLIQSVRGRSTRSLSSTEREEIASV 127 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV- 265 D + E T FD +S+ +++ +Q +G L Sbjct: 128 AKDK--PNIDLEIT----------------FDYNSANISTKSLASVQALGRALTSPDLKG 169 Query: 266 --ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + GHTDA N LS RA + + L++ G+ +LK Sbjct: 170 STFVVAGHTDA---AGGESYNQDLSERRADAIKRYLVEKYSISATDLVTVGYGKSKLKDP 226 Query: 324 SDPMNSANRRIDIL 337 S PM NRR+ ++ Sbjct: 227 SQPMAEVNRRVQVV 240 >gi|313201413|ref|YP_004040071.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gi|312440729|gb|ADQ84835.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 356 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 17/125 (13%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV--ISIRGHTDASPFRNIARDNW 285 + ++ +F E VL + E + EV + I GHTD + A N Sbjct: 233 VTLQSEVLFGFDKDNLKEEGKKVLNADVVEKMKAHPEVELVLITGHTD--RIGDEAY-NQ 289 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRR--ID 335 +LS RA + + L+ G+ R+ + G + + NRR ++ Sbjct: 290 KLSERRANAVKKYLVSQGIEASRLHAV-GKGEAEPVVDCQGVRGKKAIACLQPNRRVVVE 348 Query: 336 ILVED 340 I V+ Sbjct: 349 IEVQR 353 >gi|260426228|ref|ZP_05780207.1| OmpA family protein [Citreicella sp. SE45] gi|260420720|gb|EEX13971.1| OmpA family protein [Citreicella sp. SE45] Length = 219 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS L+ + + GHTD A N +L L RA + Sbjct: 75 FAFNSSQLDAGARETLRVQAGWIRQFPEVRFRVYGHTD---LVGSASYNRQLGLARAQAV 131 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322 L G+S R+ + + + I Sbjct: 132 VAYLASQGISRSRLEAVVSYGETQPLI 158 >gi|256019218|ref|ZP_05433083.1| outer membrane protein A [Shigella sp. D9] Length = 109 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 252 LQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 L + L I + GHTD N LS RA + Q L+ G+ ++I Sbjct: 9 LDHLAMNLNSFEKINGIIVIGHTDRL---GSEDYNLTLSRKRAETVRQYLIAKGLPAEKI 65 Query: 310 SKISGFAHHRLKIA---SDPMNSA------NRRIDILVE 339 + I G + ++ S NRR+++ V+ Sbjct: 66 TSI-GMGKSQPVKKCKYNNDRASLIVCLQPNRRVEVEVD 103 >gi|86157306|ref|YP_464091.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773817|gb|ABC80654.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 170 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 24/152 (15%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + K + G ++N F + P ++++ L Sbjct: 28 KKAAGQATVGKLEKEINRRLLEEG-------RKNQCSFKTDNDQLEPGCDQKMKRLSNAL 80 Query: 260 AHSTEVIS----------IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 + + ++ + GHTD A N LS RA + L+ G+ + I Sbjct: 81 VDAKKRLNGAGVKNFKFVVSGHTDT---SGSAAHNQELSARRAAVIEKELVARGIPQAEI 137 Query: 310 SKISGFAHHRLKIASD---PMNSANRRIDILV 338 + G + + D + NRR ++ V Sbjct: 138 ESV-GMGSKKPLVKPDDTPAKKAKNRRYELQV 168 >gi|253999390|ref|YP_003051453.1| OmpA/MotB domain-containing protein [Methylovorus sp. SIP3-4] gi|253986069|gb|ACT50926.1| OmpA/MotB domain protein [Methylovorus sp. SIP3-4] Length = 356 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 17/125 (13%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEV--ISIRGHTDASPFRNIARDNW 285 + ++ +F E VL + E + EV + I GHTD + A N Sbjct: 233 VTLQSEVLFGFDKDNLKEEGKKVLNADVVEKMKAHPEVELVLITGHTD--RIGDEAY-NQ 289 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRR--ID 335 +LS RA + + L+ G+ R+ + G + + NRR ++ Sbjct: 290 KLSERRANAVKKYLVSQGIEASRLHAV-GKGEAEPVVDCQGVRGKKAIACLQPNRRVVVE 348 Query: 336 ILVED 340 I V+ Sbjct: 349 IEVQR 353 >gi|315635826|ref|ZP_07891088.1| flagellar motor protein MotB [Arcobacter butzleri JV22] gi|315479805|gb|EFU70476.1| flagellar motor protein MotB [Arcobacter butzleri JV22] Length = 252 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 6/197 (3%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 K W + YADF+++L+A F+ ++ + + + + +KA+++ F A Sbjct: 3 KKKCKCECPAGEKWAVPYADFLSLLLALFIALYALASINVEKQKALKEEF--MKIYNFAA 60 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 S I +++ E D + + + V + N+ + N+ LS+ Sbjct: 61 SDTIKEQE---ETEKSMTTDPTNEPDEGRKPVVQPLTKQNELENKNAKGGNLLELSDGTF 117 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + + + S D K + + +P ++ + + K Sbjct: 118 MSVPAHLIFESGKAELSGADSADFLKKL-AQLISAMPSDTEINVKGYAEDSEVNKSRYKD 176 Query: 200 SSTLSGLVADNIVKGVL 216 + LS A+N+++ +L Sbjct: 177 ALDLSTARANNVIRELL 193 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTEV--ISIRGHT-DASPFRNIARDNWRLSLDRA 292 F+ + ++ L+K+ ++++ I+++G+ D+ ++ +D LS RA Sbjct: 126 FESGKAELSGADSADFLKKLAQLISAMPSDTEINVKGYAEDSEVNKSRYKDALDLSTARA 185 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHR 319 + + L+K + +R+ SG+ ++ Sbjct: 186 NNVIRELLKYNIPSNRLYS-SGYGSNK 211 >gi|237712295|ref|ZP_04542776.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA] gi|229453616|gb|EEO59337.1| major outer membrane protein OmpA [Bacteroides sp. 9_1_42FAA] Length = 368 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + AK + V +++ V E + I F + PE +V + Sbjct: 227 KKFAKVEDRVVEKEVIKEVIREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISPEGMVNV 286 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 Q + + + + I G D + A N LS RA + Y L+ GV E ++ K Sbjct: 287 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 344 Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337 ++ +D M N R+ IL Sbjct: 345 VAMGG-------TDNMFGKNYLNRVVIL 365 >gi|254481114|ref|ZP_05094360.1| OmpA family protein [marine gamma proteobacterium HTCC2148] gi|214038909|gb|EEB79570.1| OmpA family protein [marine gamma proteobacterium HTCC2148] Length = 209 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 31/203 (15%) Query: 150 DSEKGKDLCKSTDLEKSINKEENY--FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV 207 D + D +K++ + + L K + ++ ++DL + +++ + ++ Sbjct: 26 DPARPDDPEAHLAAQKALTDIRRFHGDVRELPGLKDSGLVLQENIEDLQQALATLNAKVL 85 Query: 208 ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VI 266 I + + +FD PE L+ + VL + + Sbjct: 86 DQEIQISLSADL----------------LFDFDQYQVKPEADAELRTLTTVLLETGSAQV 129 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASD 325 I GHTDA N RLS RA S + L+ G + D + G + Sbjct: 130 RIVGHTDAL---GSETYNQRLSEQRAESIKRWLLGPGHIGSDVTIETMGKGESEPVAPNS 186 Query: 326 --------PMNSANRRIDILVED 340 + NRR++++++ Sbjct: 187 NIDGSDNVDGRALNRRVELVIQT 209 >gi|157962391|ref|YP_001502425.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847391|gb|ABV87890.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 289 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++ + + ++ E LA+ V + I +TD+ R+I N ++S RA S Sbjct: 184 YESGGTELTRYAKSQIARVQEYLAYDQNVDLVLIDAYTDSYGGRSI---NQKVSEQRADS 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + SG+ ++RI G R ++ S NRR+ I + Sbjct: 241 VKDFFVASGIGQNRIH-TMGHGEKRHVASNQTIDERSRNRRVVIRI 285 >gi|313203560|ref|YP_004042217.1| ompa/motb domain protein [Paludibacter propionicigenes WB4] gi|312442876|gb|ADQ79232.1| OmpA/MotB domain protein [Paludibacter propionicigenes WB4] Length = 778 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 18/142 (12%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 SG + D I E L +I N P+ L + +L Sbjct: 605 SGAMKDLISNKQELEVNDRWKLNNIHYNFNK-------WDIRPDATPTLDSLITLLKIYP 657 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I + +TD+ R ++ N LS RA S L+K G+ +R+ + G + Sbjct: 658 IKIELGSYTDS---RGTSQYNDTLSQKRAESVVAYLVKHGIDRNRLIAV-GHGERNILNR 713 Query: 324 -------SDPMNSANRRIDILV 338 S+ + NRR ++ V Sbjct: 714 CIDGVSCSENEHQVNRRTEVKV 735 >gi|153871121|ref|ZP_02000371.1| lipoprotein [Beggiatoa sp. PS] gi|152072413|gb|EDN69629.1| lipoprotein [Beggiatoa sp. PS] Length = 285 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F SS Q+I + + I I GHTD A N LS R Sbjct: 175 FPTGSSEIRGNAKRQCQEIAQAVRDVFKTDKNSKIRIEGHTDNQ---GKADYNRGLSAKR 231 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS----ANRRIDILVEDR 341 A + L+K ++ G+ + + + NRR+ ++ DR Sbjct: 232 AKKIKEQLVKELNLPAERFEVVGWGEEKPIARCNNGDEHGCFLNRRVTLVRIDR 285 >gi|90409178|ref|ZP_01217293.1| outer membrane protein OmpA [Psychromonas sp. CNPT3] gi|90309723|gb|EAS37893.1| outer membrane protein OmpA [Psychromonas sp. CNPT3] Length = 326 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 14/130 (10%) Query: 215 VLFETTRTGILISIIDQRNTP-----MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISI 268 + + ++ I Q P FD SS LP +L +I + LA + ISI Sbjct: 197 IPITQPKETVVSEIKKQPKLPKNIILFFDFDSSEILP--TPLLHQITDQLAKFPKINISI 254 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 HTD+ ++ D +L+ RA + + ++++RI+ + ++ Sbjct: 255 IAHTDSE-GSDLYND--KLAAKRALEVSKYFLHKNINKNRIN-VLSHGERLPTHDNETKK 310 Query: 327 MNSANRRIDI 336 + NRR++I Sbjct: 311 GRAKNRRVEI 320 >gi|88858031|ref|ZP_01132673.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Pseudoalteromonas tunicata D2] gi|88819648|gb|EAR29461.1| Outer membrane protein and related peptidoglycan-associated lipo protein [Pseudoalteromonas tunicata D2] Length = 299 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ I + ++ + + + + + GHTD N LS R + Sbjct: 197 FEFDKDHLTKTAIATINEVKQAVNEWKPKTVVLSGHTD---LAGQNIYNEGLSTRRVTNV 253 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 L+ +GV E++I IS + + NRR++I + Sbjct: 254 LNGLILAGVPENKID-ISALGERHPAVRTPDGTKKAENRRVEIHL 297 >gi|158338606|ref|YP_001519783.1| outer membrane protein A [Acaryochloris marina MBIC11017] gi|158308847|gb|ABW30464.1| outer membrane protein A, putative [Acaryochloris marina MBIC11017] Length = 507 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F ++ L K+ + +A T + + GHT + ++ + LS RA Sbjct: 404 FAVGAANLTSSGRQTLDKLSKEIAEFNPDTVAVRVIGHTSKTGSASLNQS---LSQQRAQ 460 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 Q L + G+ + + G P ++ N+R +I Sbjct: 461 VVVQYLKRLGI--KQAIQAEGKGFSAPLPGIPPSDARNQRTEI 501 >gi|758341|emb|CAA26037.1| outer membrane protein (ompA) [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 350 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 222 KSDVLFNFNKSTLKPEGQQALDQLYIQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 279 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|73853300|ref|YP_308796.1| OmpA-family lipoprotein [Escherichia coli] gi|73476884|gb|AAZ76499.1| OmpA-family lipoprotein [Escherichia coli] Length = 267 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 13/112 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F+ S + L++I + + I G TD P + N LS RA Sbjct: 155 GDVLFNFDSWRLTDKANDELERIATKFSQVD-DVRIEGFTD--PLGSKEY-NRILSEKRA 210 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336 S + + G +RI + +G M NRR++I Sbjct: 211 ESVKEWFISRGFKAERI-QATGRGADAPVALCPGMVGDGLKECLRPNRRVEI 261 >gi|332978389|gb|EGK15109.1| peptidoglycan-associated lipoprotein [Psychrobacter sp. 1501(2011)] Length = 170 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS E +L + LA + + + GHTD R N L RA + Sbjct: 70 FPFDSSEIDAEAASILNEQVAFLASHPDARVLVAGHTDE---RGSREYNHALGERRAQAV 126 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 L GV++ R+ IS + R A + ++ NRR ++ Sbjct: 127 RNYLASQGVTDARVETIS-YGEDRPVAAGTDEASHAQNRRAEL 168 >gi|265763305|ref|ZP_06091873.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255913|gb|EEZ27259.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162933|emb|CBW22480.1| putative outer membrane protein [Bacteroides fragilis 638R] Length = 399 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 9/150 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR + + I + +V + K + + + D + F + E+ Sbjct: 240 KRPMPVVQYIDRPVDRIVERIVEKRIEVPAVVESHVCDLFDNIH---FAFDKDVITSESE 296 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED- 307 + L KI ++L I G+TDA R N LS RA + Y L+K V + Sbjct: 297 ITLDKIADLLKSYPDNNFLITGYTDA---RGSDNYNIDLSKRRAKAVYSALLKRQVPQHM 353 Query: 308 -RISKISGFAHHRLKIASDPMNSANRRIDI 336 + + A D + +R++ I Sbjct: 354 LKWRGVGYHASSVPASGPDKVRMGDRKVSI 383 >gi|31747683|gb|AAO38325.1| Lfe140p2 [Leptospirillum ferrooxidans] Length = 94 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + + ++ + + I G+ A + ++ LS RA S +VL+ G++ +R+ +I Sbjct: 1 LAQFMRNAPKRNVIIEGY--AYNTGSGEYND-TLSRRRAESVREVLLNDGINPERM-RIR 56 Query: 314 GFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 G + ANRR++I+V D+ G Sbjct: 57 GLGSRYPVATDKTSAGRQANRRVEIIVSDKNG 88 >gi|53713209|ref|YP_099201.1| hypothetical protein BF1919 [Bacteroides fragilis YCH46] gi|60681476|ref|YP_211620.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|253566878|ref|ZP_04844330.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52216074|dbj|BAD48667.1| hypothetical protein [Bacteroides fragilis YCH46] gi|60492910|emb|CAH07686.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|251944441|gb|EES84930.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 399 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 9/150 (6%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 KR + + I + +V + K + + + D + F + E+ Sbjct: 240 KRPMPVVQYIDRPVDRIVERIVEKRIEVPAVVESHVCDLFDNIH---FAFDKDVITSESE 296 Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED- 307 + L KI ++L I G+TDA R N LS RA + Y L+K V + Sbjct: 297 ITLDKIADLLKSYPDNNFLITGYTDA---RGSDNYNIDLSKRRAKAVYSALLKRQVPQHM 353 Query: 308 -RISKISGFAHHRLKIASDPMNSANRRIDI 336 + + A D + +R++ I Sbjct: 354 LKWRGVGYHASSVPASGPDKVRMGDRKVSI 383 >gi|107024169|ref|YP_622496.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116688504|ref|YP_834127.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|105894358|gb|ABF77523.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116646593|gb|ABK07234.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] Length = 85 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 7/84 (8%) Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + LA + I GHTD N LS RA + L+ + +++ + Sbjct: 1 MAAALAKMQNRTVDIIGHTDN---SGNRTSNIALSQARADAVKGYLITKSIPPQQMT-TT 56 Query: 314 GFAHHRLKIASDP--MNSANRRID 335 G + +D + NRRI+ Sbjct: 57 GVGPDQPIAPNDTADGRARNRRIE 80 >gi|37704626|gb|AAR01585.1| OprF [Pseudomonas sp. MFY71] Length = 321 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 238 FDFDKSVVKPNSYADIKNLADFMKQYPATHTTVEGHTDSV---GPDAYNQKLSERRANAV 294 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ I G+ R Sbjct: 295 KQVLTQQYGVETARVQSI-GYGESRPVA 321 >gi|57505872|ref|ZP_00371797.1| probable periplasmic protein Cj0599 [Campylobacter upsaliensis RM3195] gi|57015902|gb|EAL52691.1| probable periplasmic protein Cj0599 [Campylobacter upsaliensis RM3195] Length = 313 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 107/325 (32%), Gaps = 57/325 (17%) Query: 30 LGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 W I YAD M L+ F+++ + K I++ N NL + + + D Sbjct: 8 GNFW-IAYADLMAGLLFIFILLIGAIVVKYVLTQSDLKIIKENLNTQEANLELSKQALKD 66 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 +++ I + + + + L + T Q +N Sbjct: 67 KES---------IVFQLSKELNATANTLNLIHT--------------------QKTELEN 97 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 +++ S+ K+ D + I + K K K + I LS Sbjct: 98 NISTLSKDLKNNIDEKDRQILILLNQIELKEKELKAIQQDFKEAKERVENLSFIRENLSK 157 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-------- 257 + + + + + IS+ +FDK S I E + L+KI Sbjct: 158 ELQKKLDENISIDQKTGA--ISL---PAEVLFDKDSFILKDEAKISLKKILSGYLTGILD 212 Query: 258 ---VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE--DRISKI 312 + + I I GHTD+ N LS RAY + E ++ Sbjct: 213 DENISKNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMSFIYSFYKDERLQKLLMA 268 Query: 313 SGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + + +RRI+I Sbjct: 269 SGRSFSVPILKNGVEDKDLSRRIEI 293 >gi|332667996|ref|YP_004450784.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336810|gb|AEE53911.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 542 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 19/245 (7%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 +D I V + G +K + LE+N+F L N K S + Sbjct: 308 VDARIKPQPVVIINGLVREKGK-GFLESNLFLLHNESDEIFSKARSNALSGEYSMSFPRY 366 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E +I P + K+ + K + ++ ++ ++ + VA+ I V T Sbjct: 367 PGEFTIRVNFAEGYPSIEKKVTIDDKTPEVIE-ISFEVDPAI--PVAEPIKPVVTVAKTP 423 Query: 222 TGILISIIDQRN---TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASP 276 + +N +F ++ L + E A ++I GHTD Sbjct: 424 EPKTEAPTPSQNTAARVLFAFDQAVLNEAARQELAAVAEA-AKKANRYTLTIIGHTDD-- 480 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 A N +LS RA + G++ I+ + +D + NRR+ Sbjct: 481 -AGAAEYNQQLSERRAKAVADYFAAQGLTAK----IAAKGELVPAVTNDSEGNKAKNRRV 535 Query: 335 DILVE 339 ++++E Sbjct: 536 EVVLE 540 >gi|270261236|ref|ZP_06189509.1| outer membrane protein A, precursor [Serratia odorifera 4Rx13] gi|270044720|gb|EFA17811.1| outer membrane protein A, precursor [Serratia odorifera 4Rx13] Length = 359 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 27/135 (20%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + P+ L ++ L+ + + G+TDA + N +LS Sbjct: 229 KSDVLFNFNKATLKPQGQQALDQLYSQLSSMDPKDGSVVVLGYTDAV---GSDQYNQKLS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------------PMNSANRRID 335 RA S L+ G+ D+IS G + + +RR++ Sbjct: 286 EKRAQSVVDYLVSKGIPSDKISA-RGMGEADSVTGNTCGYKAGRATKAQIACLAPDRRVE 344 Query: 336 I-------LVEDRQG 343 I +V QG Sbjct: 345 IEVKGIKDVVTQPQG 359 >gi|146993|gb|AAA24237.1| outer membrane protein II [Escherichia vulneris] Length = 244 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 125 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 181 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ ++IS G + D + + +RR++I Sbjct: 182 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKARPALIDCLAPDRRVEIE 240 Query: 338 VE 339 V+ Sbjct: 241 VK 242 >gi|323698024|ref|ZP_08109936.1| peptidoglycan-associated lipoprotein [Desulfovibrio sp. ND132] gi|323457956|gb|EGB13821.1| peptidoglycan-associated lipoprotein [Desulfovibrio desulfuricans ND132] Length = 184 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S E+ +L + +L + + I GH D R N L RA +A Sbjct: 83 FAFNSYELSDESRSILAQKATILRKFADVNVVIEGHCDE---RGTEEYNLALGERRARAA 139 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 Y+ L+ GV +R+ +S + ++ + NRR + +++ Sbjct: 140 YEHLVILGVEPERMKIVS-YGEEYPVDPGHNETAWAKNRRDEFVIK 184 >gi|212286442|dbj|BAG82874.1| majour outer mambrane protein OmpA [Bacteroides vulgatus] Length = 357 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + AK + V +++ V E + I F + PE +V + Sbjct: 216 KKFAKVEDRVVEKEVIKEVIREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISPEGMVNV 275 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 Q + + + + I G D + A N LS RA + Y L+ GV E ++ K Sbjct: 276 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 333 Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337 ++ +D M N R+ IL Sbjct: 334 VAMGG-------TDNMFGKNYLNRVVIL 354 >gi|119094108|gb|ABL60938.1| flagellar motor protein MotB [uncultured marine bacterium HF10_19P19] Length = 110 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-NPFGKN----LM 77 P +W +AD T+LMAFF+++ + K I N FG ++ Sbjct: 17 PKCPPVGAPAWMATFADMATLLMAFFVLILSFAEFNVPKFKQISGSLRNAFGVQKVVPIV 76 Query: 78 TASKGIFDEQNPPERSSQNKIDLSIDEHITK 108 KG S + + + T+ Sbjct: 77 EQPKGTTVLSLNFSPSPSKSVTNEMTQQTTQ 107 >gi|330811386|ref|YP_004355848.1| OmpA family lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379494|gb|AEA70844.1| Putative OmpA family lipoprotein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 66 FEYDSSDLKPEAMRALDVHAKDLKSNGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163 >gi|323700324|ref|ZP_08112236.1| OmpA/MotB domain protein [Desulfovibrio sp. ND132] gi|323460256|gb|EGB16121.1| OmpA/MotB domain protein [Desulfovibrio desulfuricans ND132] Length = 174 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%) Query: 237 FDKSSSIPL-PETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 F +S++ ++ L ++G L A + I GHTD+ N +LS RA Sbjct: 70 FATNSAVITGEQSFRQLDELGRALTSSALRGARMEIGGHTDSV---GSDAYNLQLSRKRA 126 Query: 293 YSAYQVL-MKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L K G + + ++G+ +++ + NRR+ I Sbjct: 127 QAVSDYLNKKYGFTA---AAVTGYGESAPVASNETAEGRAGNRRVVI 170 >gi|239817632|ref|YP_002946542.1| OmpA/MotB domain protein [Variovorax paradoxus S110] gi|239804209|gb|ACS21276.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 205 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + P + V+ + + + S I + GHTD + N LS RA Sbjct: 104 FEVGGTTLTPASQQVMNEALMAAQSRSGSDIVVTGHTDT---KGALEQNDMLSQRRAQEV 160 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 Q+ ++ RI + G L + + NRR+ I V Sbjct: 161 AQLFVERQFPAKRIEAV-GRGERELAVPTADEVDEPRNRRVTIEV 204 >gi|113477202|ref|YP_723263.1| OmpA/MotB [Trichodesmium erythraeum IMS101] gi|110168250|gb|ABG52790.1| OmpA/MotB [Trichodesmium erythraeum IMS101] Length = 302 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 84/268 (31%), Gaps = 21/268 (7%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P + ID+ + E+I +V+ + + + + + Sbjct: 38 RPNAFKRPDIDVQLTENIDSENVNSQTEENQVTETLETETTKTTTIETKDAETTTTAKII 97 Query: 149 RDSEKGKDLCKSTDLEKSINKEE---NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 K ++ + ++ E + P + +I + Q KI +T + Sbjct: 98 YKPSKVNIETTTSTKNPATDRTETTTSAQQPTANTNRIETRTSRDTEQPTTDKIETTTNT 157 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPM----------FDKSSSIPLPETIVVLQKI 255 + + + + +++ D + + F+ + + + Sbjct: 158 IESTAASQAKPETVSGQTDIVATSDSQEKYLTEAKTLGQIKFEINEVELSSPAKQTVNSL 217 Query: 256 GEVLAHS-TEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 + ++I GHT A+ N +S DRA L + + IS Sbjct: 218 IPEINKYDPNRVTIKVEGHTSRV---GDAQLNKEISQDRANVVVAYLKEKNLPHQVIS-- 272 Query: 313 SGFAHHRLKIASDPMNSANRRIDILVED 340 G + + S+P + N+R I++ Sbjct: 273 EGMGYSQPLPNSNPASDINQRTVIILIP 300 >gi|254297563|ref|ZP_04965016.1| ompA family protein [Burkholderia pseudomallei 406e] gi|157807731|gb|EDO84901.1| ompA family protein [Burkholderia pseudomallei 406e] Length = 254 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 201 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254 >gi|330448674|ref|ZP_08312322.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492865|dbj|GAA06819.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 180 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S P + L VL + +++ G TD P + ++ LS+ RA Sbjct: 50 FGFDKSELTPAEMSRLANAVNVLQQNPSFKVAVVGSTD--PEGSEEYND-ALSMRRAQVV 106 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 L G+S R++ I G L I +D N ANRR +++ D Sbjct: 107 GDYLQSQGISSSRMTLI-GTGERELFIHTDSRSDNRANRRTQLILLD 152 >gi|261749326|ref|YP_003257011.1| outer membrane protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497418|gb|ACX83868.1| outer membrane protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 408 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEV-LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD P ++ ++ +I E+ + I G+TD+ N LS RA Sbjct: 312 LFDLGKFTLSPNSLEIIDEIYEIMIKKLPNSKFYINGYTDSY---GKHSYNKILSTRRAN 368 Query: 294 SAYQVLMKSGVSEDRI 309 S ++ L+ G+ R+ Sbjct: 369 SVFEALVSKGIDPSRM 384 >gi|317049504|ref|YP_004117152.1| OmpA/MotB domain-containing protein [Pantoea sp. At-9b] gi|316951121|gb|ADU70596.1| OmpA/MotB domain protein [Pantoea sp. At-9b] Length = 157 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F + S PE+ + ++ LA + E + I GHTD N +LSL R Sbjct: 49 DKILFGINESELTPESKTTINRMATNLAATGIEHLRIDGHTDNY---GTDSYNEQLSLKR 105 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + + + G +++ + NRR+ +++ Sbjct: 106 ANAVAAQWAEGASLPRSNIETRGLGKKYPVTSNNSAQGRAQNRRVAVVI 154 >gi|254714557|ref|ZP_05176368.1| peptidoglycan-associated lipoprotein [Brucella ceti M644/93/1] gi|254717454|ref|ZP_05179265.1| peptidoglycan-associated lipoprotein [Brucella ceti M13/05/1] gi|261219284|ref|ZP_05933565.1| peptidoglycan-associated lipoprotein [Brucella ceti M13/05/1] gi|261322345|ref|ZP_05961542.1| peptidoglycan-associated lipoprotein [Brucella ceti M644/93/1] gi|260924373|gb|EEX90941.1| peptidoglycan-associated lipoprotein [Brucella ceti M13/05/1] gi|261295035|gb|EEX98531.1| peptidoglycan-associated lipoprotein [Brucella ceti M644/93/1] Length = 168 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D S NRR + V + G Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167 >gi|163796931|ref|ZP_02190887.1| Outer membrane protein and related peptidoglycan-associated lipo protein [alpha proteobacterium BAL199] gi|159177678|gb|EDP62229.1| Outer membrane protein and related peptidoglycan-associated lipo protein [alpha proteobacterium BAL199] Length = 165 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS L+K L + +++ GH D R N L R Sbjct: 60 DRVFFALDSSEVAANGRTTLEKQAFWLRKYPQATVTVEGHADE---RGTREYNLALGERR 116 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A +A L+ GV RI+ IS G + +++ + NRR Sbjct: 117 AAAARDYLVSLGVDPSRIATISYGKERPDVLGSNEEAWAKNRR 159 >gi|147001|gb|AAA24241.1| outer membrane protein II [Escherichia vulneris] Length = 244 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 125 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 181 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ ++IS G + D + + +RR++I Sbjct: 182 EKRAQSVVDYLISKGIPSNKISA-RGMGESNPVTGNTCDNVKARPALIDCLAPDRRVEIE 240 Query: 338 VE 339 V+ Sbjct: 241 VK 242 >gi|307294752|ref|ZP_07574594.1| peptidoglycan-associated lipoprotein [Sphingobium chlorophenolicum L-1] gi|306879226|gb|EFN10444.1| peptidoglycan-associated lipoprotein [Sphingobium chlorophenolicum L-1] Length = 169 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + +FD + +LQ L + ++I GH D R N L Sbjct: 60 SSDRILFDTDQYDVDAQDQQILQSQAAWLQQNPNVRVTIEGHADE---RGTRDYNIALGE 116 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339 RA +A L G+ RI+ +S + SD + NRR + + V+ Sbjct: 117 RRANAAKNYLASLGIDAGRITTVSYGKERPAALGSDEAAWAQNRRAVTVTVQ 168 >gi|332529393|ref|ZP_08405354.1| ompa/motb domain-containing protein [Hylemonella gracilis ATCC 19624] gi|332041191|gb|EGI77556.1| ompa/motb domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 203 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 9/112 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRA 292 T FD S PE I L + T +I GHTD+ N +LS+ RA Sbjct: 96 TVFFDFDKSELKPEAIASLDTLAAKAKGRTVEATIVVGHTDS--IGTPEY-NLKLSVRRA 152 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRR--IDILVED 340 + L G++ + G +D + NRR I++++ Sbjct: 153 EAVKAHLTAQGINSASVF-TEGKGLTAPARPNDTAEGRAVNRRADIELVIVR 203 >gi|330975320|gb|EGH75386.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 167 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 68 FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 125 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 165 >gi|229895607|ref|ZP_04510778.1| putative OMPA family outer membrane porin precursor [Yersinia pestis Pestoides A] gi|229701413|gb|EEO89441.1| putative OMPA family outer membrane porin precursor [Yersinia pestis Pestoides A] Length = 560 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 232 RNTPMFDKSSSIPLPETIV---VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288 + P+FD +S+ + +++ + V + + I I GH+D + ++ N LS Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVERNKEKKILIVGHSDNTGSSSM---NMALS 493 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + L+K G + NRR+++L+ Q Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549 >gi|126452529|ref|YP_001066330.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|134277725|ref|ZP_01764440.1| ompA family protein [Burkholderia pseudomallei 305] gi|217421747|ref|ZP_03453251.1| ompA family protein [Burkholderia pseudomallei 576] gi|237812370|ref|YP_002896821.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|242318072|ref|ZP_04817088.1| ompA family protein [Burkholderia pseudomallei 1106b] gi|254179713|ref|ZP_04886312.1| ompA family protein [Burkholderia pseudomallei 1655] gi|126226171|gb|ABN89711.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|134251375|gb|EBA51454.1| ompA family protein [Burkholderia pseudomallei 305] gi|184210253|gb|EDU07296.1| ompA family protein [Burkholderia pseudomallei 1655] gi|217395489|gb|EEC35507.1| ompA family protein [Burkholderia pseudomallei 576] gi|237502710|gb|ACQ95028.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|242141311|gb|EES27713.1| ompA family protein [Burkholderia pseudomallei 1106b] Length = 254 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 201 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254 >gi|22125427|ref|NP_668850.1| hypothetical protein y1530 [Yersinia pestis KIM 10] gi|45442357|ref|NP_993896.1| hypothetical protein YP_2580 [Yersinia pestis biovar Microtus str. 91001] gi|108808138|ref|YP_652054.1| hypothetical protein YPA_2144 [Yersinia pestis Antiqua] gi|108811590|ref|YP_647357.1| hypothetical protein YPN_1427 [Yersinia pestis Nepal516] gi|145599338|ref|YP_001163414.1| hypothetical protein YPDSF_2062 [Yersinia pestis Pestoides F] gi|149365180|ref|ZP_01887215.1| putative membrane protein [Yersinia pestis CA88-4125] gi|162421467|ref|YP_001607103.1| OmpA domain-containing protein [Yersinia pestis Angola] gi|165926917|ref|ZP_02222749.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939224|ref|ZP_02227774.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166011145|ref|ZP_02232043.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212522|ref|ZP_02238557.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398614|ref|ZP_02304138.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421232|ref|ZP_02312985.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424634|ref|ZP_02316387.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467871|ref|ZP_02332575.1| OmpA domain protein [Yersinia pestis FV-1] gi|218930004|ref|YP_002347879.1| hypothetical protein YPO2953 [Yersinia pestis CO92] gi|229838541|ref|ZP_04458700.1| putative OMPA family outer membrane porin precursor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899106|ref|ZP_04514249.1| putative OMPA family outer membrane porin precursor [Yersinia pestis biovar Orientalis str. India 195] gi|229901867|ref|ZP_04516988.1| putative OMPA family outer membrane porin precursor [Yersinia pestis Nepal516] gi|270490053|ref|ZP_06207127.1| OmpA family protein [Yersinia pestis KIM D27] gi|294504711|ref|YP_003568773.1| hypothetical protein YPZ3_2601 [Yersinia pestis Z176003] gi|21958316|gb|AAM85101.1|AE013756_2 hypothetical [Yersinia pestis KIM 10] gi|45437221|gb|AAS62773.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108775238|gb|ABG17757.1| membrane protein [Yersinia pestis Nepal516] gi|108780051|gb|ABG14109.1| putative membrane protein [Yersinia pestis Antiqua] gi|115348615|emb|CAL21559.1| putative membrane protein [Yersinia pestis CO92] gi|145211034|gb|ABP40441.1| membrane protein [Yersinia pestis Pestoides F] gi|149291593|gb|EDM41667.1| putative membrane protein [Yersinia pestis CA88-4125] gi|162354282|gb|ABX88230.1| OmpA domain protein [Yersinia pestis Angola] gi|165912824|gb|EDR31451.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165921268|gb|EDR38492.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165989823|gb|EDR42124.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206453|gb|EDR50933.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166960721|gb|EDR56742.1| OmpA domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051118|gb|EDR62526.1| OmpA domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056516|gb|EDR66285.1| OmpA domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680763|gb|EEO76858.1| putative OMPA family outer membrane porin precursor [Yersinia pestis Nepal516] gi|229687508|gb|EEO79581.1| putative OMPA family outer membrane porin precursor [Yersinia pestis biovar Orientalis str. India 195] gi|229694907|gb|EEO84954.1| putative OMPA family outer membrane porin precursor [Yersinia pestis biovar Orientalis str. PEXU2] gi|262362773|gb|ACY59494.1| hypothetical protein YPD4_2587 [Yersinia pestis D106004] gi|262366698|gb|ACY63255.1| hypothetical protein YPD8_2582 [Yersinia pestis D182038] gi|270338557|gb|EFA49334.1| OmpA family protein [Yersinia pestis KIM D27] gi|294355170|gb|ADE65511.1| hypothetical protein YPZ3_2601 [Yersinia pestis Z176003] gi|320014496|gb|ADV98067.1| putative OMPA family outer membrane porinprecursor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 560 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 232 RNTPMFDKSSSIPLPETIV---VLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLS 288 + P+FD +S+ + +++ + V + + I I GH+D + ++ N LS Sbjct: 437 QKLPLFDSNSTKLKLNSQTNEMMMELLSLVERNKEKKILIVGHSDNTGSSSM---NMALS 493 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQ 342 RA + L+K G + NRR+++L+ Q Sbjct: 494 EQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQ 549 >gi|313905138|ref|ZP_07838507.1| OmpA/MotB domain protein [Eubacterium cellulosolvens 6] gi|313470041|gb|EFR65374.1| OmpA/MotB domain protein [Eubacterium cellulosolvens 6] Length = 293 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 9/135 (6%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRG 270 G+ G + I+ +N F+ SS L VLA I+I G Sbjct: 111 GISDVQVSRGKDYTFIEFKNKAFFEGDSSALTASGRQALDIFCAVLAPEKDQVSQINIMG 170 Query: 271 HTDASPFRNIA--RDNWRLSLDRAYSAYQVLMKSGV-SEDRISKISGFAHHRLK--IASD 325 HT A+ R + L+ RA + + V ++ + + +R +++ Sbjct: 171 HTAAAQSAKTDSIRGDRMLASMRAAEVLVFIQEKNVIEPAKLVSME-YGEYRPIADNSTE 229 Query: 326 PMNSANRRIDILVED 340 +ANRR++IL+ D Sbjct: 230 EGRAANRRVEILLID 244 Score = 43.3 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W Y D +T+LM FF++++ +++ D + + P + S + + Sbjct: 16 WMDTYGDLVTLLMTFFVLLYSMSSLDQSKWELFVKSIYPGMTDSDKDSAEMKLDAQVVST 75 Query: 93 SSQNKIDLSIDEHITKNSVDL 113 SS I ++ + + +NSVD Sbjct: 76 SSVENI-VAGESTMPENSVDD 95 >gi|160890582|ref|ZP_02071585.1| hypothetical protein BACUNI_03025 [Bacteroides uniformis ATCC 8492] gi|156859581|gb|EDO53012.1| hypothetical protein BACUNI_03025 [Bacteroides uniformis ATCC 8492] Length = 392 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 11/145 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP- 235 P ++ + +L ++ + LVA T + + D P Sbjct: 235 PQLISQVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETE----VIVPDPDIAPR 290 Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292 F+ S+ P + L + + + ++ G+ D++ N LSL RA Sbjct: 291 TVFFNIGSAEVSPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRA 348 Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316 + VL+K G+ DR+ +G Sbjct: 349 QAVVDVLVKQYGIPADRLKVDAGGG 373 >gi|77460622|ref|YP_350129.1| OmpA/MotB [Pseudomonas fluorescens Pf0-1] gi|77384625|gb|ABA76138.1| putative OmpA family lipoprotein [Pseudomonas fluorescens Pf0-1] Length = 165 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 66 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 163 >gi|117919656|ref|YP_868848.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117611988|gb|ABK47442.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 191 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 A++ +++ GHTD N++LSL RA + ++L++ G + +R + + G Sbjct: 111 ANTETRLTLVGHTD---IVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFT-VVGKGIS 166 Query: 319 RLKIASD--PMNSANRRIDILVED 340 + NRR+ +V + Sbjct: 167 EPVADNHSSEGRRLNRRVQFIVNN 190 >gi|254227964|ref|ZP_04921394.1| outer membrane protein OmpA [Vibrio sp. Ex25] gi|262396053|ref|YP_003287906.1| outer membrane protein A precursor [Vibrio sp. Ex25] gi|151939460|gb|EDN58288.1| outer membrane protein OmpA [Vibrio sp. Ex25] gi|262339647|gb|ACY53441.1| outer membrane protein A precursor [Vibrio sp. Ex25] Length = 326 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + L +++ + + I G++D + A N +L+ RA + Sbjct: 216 FDLESAEVKDAS--TLSGTVDLMNTYPQAQVEITGYSDTT---GSAAYNQQLTEKRAKAV 270 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G++ +R++ + G +++ NRR++++V Sbjct: 271 ADEFQAKGIAAERMT-VKGMGEANPVASNETRQGRQMNRRVEVVV 314 >gi|270295719|ref|ZP_06201919.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273123|gb|EFA18985.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 397 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 11/145 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP- 235 P ++ + +L ++ + LVA T + + D P Sbjct: 240 PQLISQVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETE----VIVPDPDIAPR 295 Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292 F+ S+ P + L + + + ++ G+ D++ N LSL RA Sbjct: 296 TVFFNIGSAEVSPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRA 353 Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316 + VL+K G+ DR+ +G Sbjct: 354 QAVVDVLVKQYGIPADRLKVDAGGG 378 >gi|28871116|ref|NP_793735.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato str. DC3000] gi|71736967|ref|YP_275906.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487003|ref|ZP_05641044.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626503|ref|ZP_06459457.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650949|ref|ZP_06482292.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. aesculi str. 2250] gi|298488202|ref|ZP_07006238.1| peptidoglycan-associated outer membrane lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301384813|ref|ZP_07233231.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato Max13] gi|302063533|ref|ZP_07255074.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato K40] gi|302130603|ref|ZP_07256593.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854366|gb|AAO57430.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato str. DC3000] gi|71557520|gb|AAZ36731.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157260|gb|EFH98344.1| peptidoglycan-associated outer membrane lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323045|gb|EFW79134.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. glycinea str. B076] gi|320329683|gb|EFW85672.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. glycinea str. race 4] gi|330868619|gb|EGH03328.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330872646|gb|EGH06795.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330877972|gb|EGH12121.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. glycinea str. race 4] gi|330964831|gb|EGH65091.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. actinidiae str. M302091] gi|330988976|gb|EGH87079.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009355|gb|EGH89411.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331016446|gb|EGH96502.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 166 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 67 FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164 >gi|89094682|ref|ZP_01167618.1| sodium-type flagellar protein MotY, putative [Oceanospirillum sp. MED92] gi|89081028|gb|EAR60264.1| sodium-type flagellar protein MotY, putative [Oceanospirillum sp. MED92] Length = 285 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 8/112 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSL 289 R +F + + L I + S + I I GH+D+ R + N +S Sbjct: 176 RTAVLFPSAQWRLSDASRERLDLIALYVKNDDSVKGIYIDGHSDSQGRRLM---NRDMSK 232 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 RA L+ G+ + + + ++ NRR+ I +E Sbjct: 233 RRAEEVTAYLISIGLDPN-MITTRYHGERYPVVPNNSKKNRDRNRRVTIRLE 283 >gi|269103827|ref|ZP_06156524.1| putative OmpA family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163725|gb|EEZ42221.1| putative OmpA family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS 275 TR G I + N F + + L + V + +++ G TD++ Sbjct: 106 ITVTRNGNNIVLN-MPNEITFGVDQTTLNQRAMNALHNVALVAKEYNKTQLNVYGFTDST 164 Query: 276 PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRR 333 A N RLS RA L++ GV+ +R+ G ++ + NRR Sbjct: 165 ---GAASYNQRLSQVRAAEVGNYLIRQGVAANRVVS-QGMGEASPIATNSTAAGRAENRR 220 Query: 334 IDIL 337 + I+ Sbjct: 221 VQIV 224 >gi|317479876|ref|ZP_07938993.1| OmpA family protein [Bacteroides sp. 4_1_36] gi|316903950|gb|EFV25787.1| OmpA family protein [Bacteroides sp. 4_1_36] Length = 392 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 11/145 (7%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP- 235 P ++ + +L ++ + LVA T + + D P Sbjct: 235 PQLISQVELAAMQAQLAEMGAANQQLQNALVAAQNQPVAEVTETE----VIVPDPDIAPR 290 Query: 236 --MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRA 292 F+ S+ P + L + + + ++ G+ D++ N LSL RA Sbjct: 291 TVFFNIGSAEVSPREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRA 348 Query: 293 YSAYQVLMKS-GVSEDRISKISGFA 316 + VL+K G+ DR+ +G Sbjct: 349 QAVVDVLVKQYGIPADRLKVDAGGG 373 >gi|260575173|ref|ZP_05843173.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259022433|gb|EEW25729.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 438 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 13/232 (5%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 + + + ++ + + + +R G+ L D+E + Sbjct: 198 PGATVRTENFDDGSSRTTIERDDGSRIVTIRDASGRVLRRSRIDADGRVLRLIDDME-PV 256 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + + LP +++ + + A ++S L ++ + + + Sbjct: 257 ERIDVATLPQRDPARLVISTQDENAALRAALLASESDDLGRRFSLRQIREIREVRALAPT 316 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIAR 282 I + FD S+ L ++G ++A+ +E+ + GHTDA Sbjct: 317 I--DVDNITFDTGSAAIKATEAAKLARLGRLVANLIAANPSEMFLVEGHTDAV---GSGS 371 Query: 283 DNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 N LS RA S L + GV + + + G+ L+I + ANRR Sbjct: 372 SNLALSDRRAESLALALTEYYGVPPENLV-VQGYGETELRIDTLANEPANRR 422 >gi|254197945|ref|ZP_04904367.1| ompA family protein [Burkholderia pseudomallei S13] gi|169654686|gb|EDS87379.1| ompA family protein [Burkholderia pseudomallei S13] Length = 254 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 201 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254 >gi|118588324|ref|ZP_01545733.1| omp16 protein [Stappia aggregata IAM 12614] gi|118439030|gb|EAV45662.1| omp16 protein [Stappia aggregata IAM 12614] Length = 161 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F++ S+ + L + L + I++ GH D R + N L R Sbjct: 52 DRVFFEEDQSVLNAQGQATLANQAKWLNRYSQYTITVEGHADE---RGTRQYNIALGARR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A SA L+ GV+ RI IS + R + + S NRR Sbjct: 109 AQSARDYLVAQGVNASRIKTIS-YGKERPVAVCNDNSCWSQNRR 151 >gi|322433237|ref|YP_004210458.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] gi|321165629|gb|ADW71331.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX9] Length = 438 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 + + +FD S+ P+ V ++ G+ L + + I G+ D R A N Sbjct: 325 VIFHENVQDALFDYDSAEIRPDAKVAIEHAGKFLTEHPDIQVLIEGYADD---RGSAEYN 381 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 L RA +A LM+ G+ +R+ IS G ++ NRR Sbjct: 382 LGLGAQRASAARTALMEQGIPPERLKIISYGKEAQVCVQQTEQCWQQNRR 431 >gi|254260999|ref|ZP_04952053.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|254219688|gb|EET09072.1| ompA family protein [Burkholderia pseudomallei 1710a] Length = 254 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 147 FEDISADGRRQLGDLVASIKAKILSI--NHLVVTGYTDRL---GSDEHNARLSSERARTV 201 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254 >gi|89053487|ref|YP_508938.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88863036|gb|ABD53913.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 217 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ E +L + + + S+ GHTDA + N RL RA +A Sbjct: 79 FAFNSAELDAEARNILAQQAAFIRNFPEVRFSVYGHTDA--VGSNGY-NQRLGRRRARAA 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+ GVS R++ + + +A+D NRR Sbjct: 136 VNFLVSQGVSRHRLAALVSLGETQPVVATDMEERRNRR 173 >gi|148977601|ref|ZP_01814177.1| sodium-type flagellar protein MotY precursor [Vibrionales bacterium SWAT-3] gi|145963116|gb|EDK28384.1| sodium-type flagellar protein MotY precursor [Vibrionales bacterium SWAT-3] Length = 284 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S + L +I E + +++ + +TD++ + I+++ LS RA S Sbjct: 178 YDRNSDQLNKSSRKRLSQIAEYVRYNQDIDLVLVATYTDSADSKGISQN---LSERRAES 234 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 + G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 235 LREYFKSLGLPEDRI-QVQGYGKRRPIADNSSPIGKDKNRRVVISLGRTQ 283 >gi|319407719|emb|CBI81367.1| Outer membrane lipoprotein omp16 homolog [Bartonella sp. 1-1C] Length = 168 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS + +L + E L I+I GH D R N L R Sbjct: 58 DRVFFSLDSSSIESDAEYILARQAEWLLRYPHYSITIEGHADE---RGTREYNLALGQRR 114 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 A + L+ GVS R++ IS + R D ++ + NRR ++V + Sbjct: 115 AVAVRDHLISLGVSSQRMNTIS-YGKERPVAVCDNISCWNQNRRAVLVVNN 164 >gi|319404756|emb|CBI78357.1| Outer membrane lipoprotein omp16 [Bartonella rochalimae ATCC BAA-1498] Length = 168 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F SS + +L + E L I+I GH D R N L R Sbjct: 58 DRVFFSLDSSSIESDAEYILARQAEWLLRYPHYSITIEGHADE---RGTREYNLALGQRR 114 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 A + L+ GVS R++ IS + R D ++ + NRR +++ + Sbjct: 115 AVAVRDHLISLGVSSQRMNTIS-YGKERPVAVCDNISCWNQNRRAVLVINN 164 >gi|254488269|ref|ZP_05101474.1| OmpA domain protein [Roseobacter sp. GAI101] gi|214045138|gb|EEB85776.1| OmpA domain protein [Roseobacter sp. GAI101] Length = 632 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + + +I E+L ++ + I+G+TD+ N LS RA S Sbjct: 498 FEPGSATIDASALSTMDQIAEILKPCGDIALEIQGYTDSQ---GREEMNLALSQSRAQSV 554 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI-LVEDRQG 343 L V GF ++D ANRRI+ L+ +G Sbjct: 555 LNELRARRVLTASFVA-KGFGEEAPVESNDTEEGREANRRIEFRLIRPEEG 604 >gi|212691276|ref|ZP_03299404.1| hypothetical protein BACDOR_00767 [Bacteroides dorei DSM 17855] gi|237726434|ref|ZP_04556915.1| major outer membrane protein OmpA [Bacteroides sp. D4] gi|265752003|ref|ZP_06087796.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA] gi|212286444|dbj|BAG82875.1| majour outer mambrane protein OmpA [Bacteroides vulgatus] gi|212666508|gb|EEB27080.1| hypothetical protein BACDOR_00767 [Bacteroides dorei DSM 17855] gi|229434960|gb|EEO45037.1| major outer membrane protein OmpA [Bacteroides dorei 5_1_36/D4] gi|263236795|gb|EEZ22265.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_33FAA] Length = 357 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + AK + V +++ V E + I F + PE +V + Sbjct: 216 KKFAKVEDRVVEKEVIKEVIREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISPEGMVNV 275 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 Q + + + + I G D + A N LS RA + Y L+ GV E ++ K Sbjct: 276 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 333 Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337 ++ +D M N R+ IL Sbjct: 334 VAMGG-------TDNMFGKNYLNRVVIL 354 >gi|84501653|ref|ZP_00999825.1| peptidoglycan-associated lipoprotein [Oceanicola batsensis HTCC2597] gi|84390274|gb|EAQ02833.1| peptidoglycan-associated lipoprotein [Oceanicola batsensis HTCC2597] Length = 171 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S E L + L +S I GH D N L R Sbjct: 61 DRVLFAVDQSTLSDEARATLNAQAQWLMTNSDYTAVIEGHADEQ---GTREYNLALGARR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A +A + L+ GV+ R+ ++ + R +++ + NRR Sbjct: 118 ANAAREYLITQGVAASRLKTVT-YGKERPIEICSTESCYAKNRR 160 >gi|296448590|ref|ZP_06890462.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] gi|296253908|gb|EFH01063.1| OmpA/MotB domain protein [Methylosinus trichosporium OB3b] Length = 454 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 FD S P+ L I L + +EV + GHTDA+ DN LS R Sbjct: 335 FDSGSWTVAPDQAQRLSVIATALNQAIRNNPSEVFLVEGHTDAT---GSDVDNLSLSDRR 391 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL----VEDRQG 343 A S +L + G+ K+ + NRR+ + + + QG Sbjct: 392 AQSVATLLTRDFDVPAENLTTQGYGEQYPKVDVQGPSRENRRVTVRRITPLLNGQG 447 >gi|254181081|ref|ZP_04887679.1| ompA family protein [Burkholderia pseudomallei 1655] gi|254195586|ref|ZP_04902013.1| ompA family protein [Burkholderia pseudomallei S13] gi|169652332|gb|EDS85025.1| ompA family protein [Burkholderia pseudomallei S13] gi|184211620|gb|EDU08663.1| ompA family protein [Burkholderia pseudomallei 1655] Length = 188 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 65 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 121 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 122 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 178 >gi|134277521|ref|ZP_01764236.1| OmpA family protein [Burkholderia pseudomallei 305] gi|134251171|gb|EBA51250.1| OmpA family protein [Burkholderia pseudomallei 305] Length = 224 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 101 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214 >gi|71733989|ref|YP_273664.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554542|gb|AAZ33753.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 418 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 196 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 255 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 256 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 311 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 312 RALNRRVEILMTPQ 325 >gi|53720132|ref|YP_109118.1| outer membrane protein a precursor [Burkholderia pseudomallei K96243] gi|53724795|ref|YP_102249.1| OmpA family protein [Burkholderia mallei ATCC 23344] gi|76811968|ref|YP_334381.1| outer membrane protein a [Burkholderia pseudomallei 1710b] gi|126442031|ref|YP_001059910.1| ompA family protein [Burkholderia pseudomallei 668] gi|126452054|ref|YP_001067198.1| ompA family protein [Burkholderia pseudomallei 1106a] gi|167825270|ref|ZP_02456741.1| ompA family protein [Burkholderia pseudomallei 9] gi|167919986|ref|ZP_02507077.1| ompA family protein [Burkholderia pseudomallei BCC215] gi|226197831|ref|ZP_03793405.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|237813303|ref|YP_002897754.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|238561689|ref|ZP_00441673.2| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|242317986|ref|ZP_04817002.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|251766980|ref|ZP_02265557.2| OmpA family protein [Burkholderia mallei PRL-20] gi|254177032|ref|ZP_04883689.1| OmpA family protein [Burkholderia mallei ATCC 10399] gi|254258959|ref|ZP_04950013.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|254360032|ref|ZP_04976302.1| OmpA family protein [Burkholderia mallei 2002721280] gi|262193316|ref|YP_001079767.2| OmpA family protein [Burkholderia mallei NCTC 10247] gi|52210546|emb|CAH36529.1| outer membrane protein a precursor [Burkholderia pseudomallei K96243] gi|52428218|gb|AAU48811.1| OmpA family protein [Burkholderia mallei ATCC 23344] gi|76581421|gb|ABA50896.1| outer membrane protein a precursor [Burkholderia pseudomallei 1710b] gi|126221524|gb|ABN85030.1| outer membrane protein A [Burkholderia pseudomallei 668] gi|126225696|gb|ABN89236.1| OmpA family protein [Burkholderia pseudomallei 1106a] gi|148029272|gb|EDK87177.1| OmpA family protein [Burkholderia mallei 2002721280] gi|160698073|gb|EDP88043.1| OmpA family protein [Burkholderia mallei ATCC 10399] gi|224812455|gb|ACN64870.1| OmpA family protein [Burkholderia pseudomallei] gi|225930019|gb|EEH26032.1| OmpA family protein [Burkholderia pseudomallei Pakistan 9] gi|237505834|gb|ACQ98152.1| OmpA family protein [Burkholderia pseudomallei MSHR346] gi|238524141|gb|EEP87576.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|242141225|gb|EES27627.1| OmpA family protein [Burkholderia pseudomallei 1106b] gi|243064216|gb|EES46402.1| OmpA family protein [Burkholderia mallei PRL-20] gi|254217648|gb|EET07032.1| ompA family protein [Burkholderia pseudomallei 1710a] gi|261826008|gb|ABN03326.2| OmpA family protein [Burkholderia mallei NCTC 10229] gi|261835034|gb|ABO04145.2| OmpA family protein [Burkholderia mallei NCTC 10247] Length = 224 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 101 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214 >gi|254208912|ref|ZP_04915260.1| OmpA family protein [Burkholderia mallei JHU] gi|147750788|gb|EDK57857.1| OmpA family protein [Burkholderia mallei JHU] Length = 193 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 70 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 126 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 127 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 183 >gi|332290809|ref|YP_004429418.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332168895|gb|AEE18150.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 674 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 92/247 (37%), Gaps = 20/247 (8%) Query: 94 SQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEK 153 +Q +I + + + ++ +G ++ R E+ + ++ + + E+ Sbjct: 433 TQFEIRDADTDELISDAAIKILGYQGKEVYADRKEDAAPFQVPLTVDDYTFIASGDNHEE 492 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G+ + ++ + + + + ++ MK K +DL +K S L N + Sbjct: 493 GRMDIQIRGIQTAPYVIKVKRI--FTDSELALMKEKNLSKDLKEKDPSRFELLTDVNAPQ 550 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 V + G + FD + ++ VL ++ L I I HT Sbjct: 551 VVE----KEG---KLFMDVAPIYFDFDLHVVREDSQAVLDRLAAKLTKYKRIKIKISSHT 603 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDP 326 D+ R A N LS RA S + L+ G+ RI + G+ + I ++ Sbjct: 604 DS---RGPAAYNMPLSEKRAKSTFDYLVSKGIDASRI-QYQGYGDTKPVINCPVGKCTED 659 Query: 327 MNSANRR 333 + NRR Sbjct: 660 DHQLNRR 666 >gi|225350130|gb|ACN87975.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLELSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|144900188|emb|CAM77052.1| conserved hypothetical protein, secreted [Magnetospirillum gryphiswaldense MSR-1] Length = 196 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F ++ LPE ++ + ++ V I I GH DA N R+S RA Sbjct: 95 FSSGTADLLPEAAELVVQAVDLAKKRPHVFIMIAGHADAV---GSDEVNDRISRRRAEVV 151 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 ++++ G+ I S + + NRR+ + ++ Sbjct: 152 RNLVVERGLPPRAIVASS-HGKRNPLVPTKDGVAEPRNRRVTLTLQ 196 >gi|149185364|ref|ZP_01863681.1| outer membrane protein [Erythrobacter sp. SD-21] gi|148831475|gb|EDL49909.1| outer membrane protein [Erythrobacter sp. SD-21] Length = 218 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F L I + + I +RGH+D+ DN S +RA + Sbjct: 71 FADGMPELTEAVRAELATIVDSPQMEAGGAIVLRGHSDSD---GSDEDNLEASRERAEAV 127 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--------ASDPMNSANRRIDILVEDRQ 342 +++G+ E RI+ + F ++ + NRR+++ +E + Sbjct: 128 RDFFVENGIDEARIT-VIAFGEQNPLAPNALPDGSPNEEGRATNRRVEVTIETGR 181 >gi|265751275|ref|ZP_06087338.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238171|gb|EEZ23621.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 397 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 D F+ + + +L ++ +L + + I G+TDA R A+ N RLS Sbjct: 275 DLLENIHFEFDKDVITLVSHKILDRLAALLKNYPDSHFLITGYTDA---RGSAQYNLRLS 331 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 RA + Y+ L++ GV + K GF + + P + N R Sbjct: 332 ERRAKAVYKALLERGV-PSHMLKWRGFGNRAALVP--PAAADNIR 373 >gi|147886295|gb|ABQ52380.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Dublin] Length = 229 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 101 KSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 157 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+IS G + P + +RR++I Sbjct: 158 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 216 Query: 338 VE 339 V+ Sbjct: 217 VK 218 >gi|66044664|ref|YP_234505.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|289674679|ref|ZP_06495569.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. syringae FF5] gi|302187150|ref|ZP_07263823.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. syringae 642] gi|63255371|gb|AAY36467.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|330896136|gb|EGH28357.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936710|gb|EGH40898.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. pisi str. 1704B] gi|330959272|gb|EGH59532.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. maculicola str. ES4326] gi|330968884|gb|EGH68950.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 167 Score = 59.9 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 68 FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 124 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 125 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 165 >gi|296536906|ref|ZP_06898945.1| peptidoglycan-associated lipoprotein [Roseomonas cervicalis ATCC 49957] gi|296262766|gb|EFH09352.1| peptidoglycan-associated lipoprotein [Roseomonas cervicalis ATCC 49957] Length = 130 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS + L++ LA + + GH D R N L R Sbjct: 25 DRVFFDTDSSSVRGDQRATLERQAAWLAQYPQVQVLMEGHADE---RGTREYNLALGQRR 81 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333 A SA VL+ GV+ RIS IS + S P + NRR Sbjct: 82 ANSARDVLVAQGVAPARISTISYGKDRPAALGSTPDAWAQNRR 124 >gi|39996844|ref|NP_952795.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA] gi|39983732|gb|AAR35122.1| OmpA domain protein [Geobacter sulfurreducens PCA] gi|298505859|gb|ADI84582.1| OmpA family outer membrane protein [Geobacter sulfurreducens KN400] Length = 524 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD E L ++ E + + I GH D ++ N LSL RA S Sbjct: 416 FDFDQWSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADN--IGSVGY-NMDLSLKRAIS 472 Query: 295 AYQVLM-KSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 L+ + G+ R+ + G + + NRR +IL Sbjct: 473 VASYLIAREGIDPSRLF-VKGLGKSKPIGDNKTAEGRKLNRRGEIL 517 >gi|312885105|ref|ZP_07744791.1| OmpA family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367234|gb|EFP94800.1| OmpA family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 1569 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 19/179 (10%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 L S + K+K Q + + L+ L + V + E T + + + Sbjct: 558 ATSSLQRTSLQAAQDDKKKSEYQAVVTSLREELNKLSYQDGVS--IVEGTVGDLKVRL-- 613 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDASPFRNIARDNWRL 287 F+ L E Q IG LA HS I I GHT N L Sbjct: 614 DATHFAFNSDKIQVLEEKGNPYQTIGANLAKIAHSPFQIVIAGHTCDI---GSEEVNLNL 670 Query: 288 SLDRAYSAYQVLMKSGVSEDR-----ISKISGFAHHRLK----IASDPMNSANRRIDIL 337 S+ RA + ++ + E R + + ++ + NRR++IL Sbjct: 671 SMKRAIAVKNAILNAISGEGRQAWEGMFVTEAHGFSKPLPGNENRNEHERAKNRRVEIL 729 >gi|254500992|ref|ZP_05113143.1| peptidoglycan-associated lipoprotein, putative [Labrenzia alexandrii DFL-11] gi|222437063|gb|EEE43742.1| peptidoglycan-associated lipoprotein, putative [Labrenzia alexandrii DFL-11] Length = 158 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F++ S + L + L+ + I++ GH D R + N L R Sbjct: 49 DRVFFEEDQSTLNSQGQATLANQAKWLSRYSKYTITVEGHADE---RGTRQYNIALGARR 105 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A +A L+ GVS RI IS + R + + S NRR Sbjct: 106 AQAARDYLVSQGVSASRIKTIS-YGKERPVAVCNDNSCWSQNRR 148 >gi|37704628|gb|AAR01586.1| OprF [Pseudomonas sp. MFY72] Length = 322 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 239 FDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAYNQKLSERRANAV 295 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 VL+ + GV R++ + G+ R Sbjct: 296 RDVLVNEYGVEGGRVNAV-GYGESRPVA 322 >gi|83594657|ref|YP_428409.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] gi|9408182|emb|CAB99313.1| porin-assoziated protein (PAP) [Rhodospirillum rubrum] gi|83577571|gb|ABC24122.1| OmpA/MotB [Rhodospirillum rubrum ATCC 11170] Length = 273 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWR 286 ++ + F S+ PE+ L ++ + L+ S + + G+ D A N Sbjct: 162 VVSEGFKVFFALDSARLSPESEATLDRVSQAFLSGSPASVMVVGYADT---SGPADYNIL 218 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDIL 337 LS RA + + L + G++ + + + + RL + + NRR++++ Sbjct: 219 LSQRRAEAVARGLAQRGIASE-VLTLEAYGEERLAVPTADGVVEQQNRRVEVV 270 >gi|329295648|ref|ZP_08252984.1| putative outer membrane lipoprotein [Plautia stali symbiont] Length = 157 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F + S P + + ++ + LA + E + + HTD A N +LSL R Sbjct: 49 DKILFGINESDLTPASKASIAQMAKSLAATGIEHLRVDCHTDNY---GKADYNQQLSLKR 105 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + + G +++ + NRR+ I++ Sbjct: 106 ANAVADQWATGAAIPRQNIVTRGLGMSAPVASNNTAQGRAQNRRVAIVI 154 >gi|90417117|ref|ZP_01225045.1| outer membrane protein OprL precursor [marine gamma proteobacterium HTCC2207] gi|90331133|gb|EAS46389.1| outer membrane protein OprL precursor [marine gamma proteobacterium HTCC2207] Length = 177 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 + ++ FD ++ PE+ L + L +S + + GH D R N Sbjct: 68 VEVMTADTVFYFDFDKALLKPESRAALLEHSASLQNSPRNVRLEGHADE---RGTREYNM 124 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L RA + + L+ GVS + ++ + R ++D NRR+++ Sbjct: 125 ALGERRANAVKEFLVLQGVSPG-LIEVISYGEERAAAYGSNDDAWGLNRRVEL 176 >gi|331699296|ref|YP_004335535.1| OmpA/MotB domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953985|gb|AEA27682.1| OmpA/MotB domain protein [Pseudonocardia dioxanivorans CB1190] Length = 222 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S++ + +G L AH + + GH +P A LS RA + Sbjct: 126 FAADSAVLDGAAAETVAGVGRWLVAHPDVRVRLTGHAADTP--GPAEVALALSQQRAQAV 183 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + L +GV R+S G P +A+RR++I Sbjct: 184 AEALRANGVDPSRVSA-RGVGDADPL----PTPAASRRVEI 219 >gi|169839536|ref|ZP_02872724.1| OmpA/MotB domain protein [candidate division TM7 single-cell isolate TM7a] Length = 172 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F I I L++I +L + + GHTD++ + N +LSL RA + Sbjct: 60 FKVDGKIINENEISELKEIVSILNEFGESGTVDFIGHTDST---GTKKYNQKLSLTRARN 116 Query: 295 AYQVLMKSGVSED-RISKISGFAHHRL--KIASDPMNSANRRIDIL 337 A ++ + G+ + I +ISG +D NRR++IL Sbjct: 117 AARLFREFGLKDAISIGEISGKGEEDPVDLNETDQGKYINRRVEIL 162 >gi|90578134|ref|ZP_01233945.1| putative outer membrane protein [Vibrio angustum S14] gi|90441220|gb|EAS66400.1| putative outer membrane protein [Vibrio angustum S14] Length = 196 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 9/112 (8%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F SS + + + E LA + I ++G+ ASP N A + LS RA + Sbjct: 76 LFANDSSEIPESYMENISNMSEFLAKYPKTHIELKGY--ASPVGNAAYNV-GLSKRRAAA 132 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN---RRIDILVEDRQG 343 Q L+ GV+ RI I GF ASD S N RR+ V QG Sbjct: 133 IQQALITEGVAPSRIKTI-GFGDSDPVKASDAEES-NTLSRRVVAQVVGSQG 182 >gi|289769405|ref|ZP_06528783.1| secreted protein [Streptomyces lividans TK24] gi|289699604|gb|EFD67033.1| secreted protein [Streptomyces lividans TK24] Length = 210 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + T ++ + T+ S E + P L + + K L I S + Sbjct: 25 GTTTAHADDDPNDPPGTEPSASAPVEVDPNDPDLKLPDGATLAQAKVLD-----IKSVVE 79 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHST 263 D + T + + +F K SS E ++ I E+ A + Sbjct: 80 EQSGDERREDTNTSVT--------LALQAEVLFGKDSSKLGAEAKSRIRGIADEIRAQNA 131 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + G TD + D LS RA + + VL +S ++ G+ Sbjct: 132 TRVRVFGFTDDL-GSSAHGDV--LSKRRANAVHDVLSQSLNDAGITYEVRGYGEQYPIAD 188 Query: 324 SDPMNSA--NRRIDI 336 + NRR+++ Sbjct: 189 NSTEAGRKKNRRVEV 203 >gi|269119253|ref|YP_003307430.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] gi|268613131|gb|ACZ07499.1| OmpA/MotB domain protein [Sebaldella termitidis ATCC 33386] Length = 366 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 18/115 (15%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL------AHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 FD + ++ + + + T V+ I GHTD+ + N +LS Sbjct: 230 FDFDKATVKENAKQEIRGAAQQIKNLNQNNNLTGVLDIAGHTDS---KGAKEYNQKLSER 286 Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS-------DPM-NSANRRIDI 336 RA + V + G ++G+ R + +P + NRR+++ Sbjct: 287 RAAAVADVYTQVIGTGNGIRYNVAGYGEDRPVAPNTLPNGKDNPEGRARNRRVEV 341 >gi|261253570|ref|ZP_05946143.1| sodium-type flagellar protein MotY precursor [Vibrio orientalis CIP 102891] gi|260936961|gb|EEX92950.1| sodium-type flagellar protein MotY precursor [Vibrio orientalis CIP 102891] Length = 293 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S ++ L +I E + H+ ++ + + +TDA ++ +++ LS RA Sbjct: 187 YDRTSVELNKQSQKRLAQIAEYIKHNQDIDLVLVSTYTDAEDSKSASQN---LSERRAEV 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LQNYFKSLGLPEDRI-RVQGYGKRRPIDDNASPIGKDRNRRVVISLGRTQ 292 >gi|256785509|ref|ZP_05523940.1| secreted protein [Streptomyces lividans TK24] Length = 206 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + T ++ + T+ S E + P L + + K L I S + Sbjct: 21 GTTTAHADDDPNDPPGTEPSASAPVEVDPNDPDLKLPDGATLAQAKVLD-----IKSVVE 75 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHST 263 D + T + + +F K SS E ++ I E+ A + Sbjct: 76 EQSGDERREDTNTSVT--------LALQAEVLFGKDSSKLGAEAKSRIRGIADEIRAQNA 127 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 + + G TD + D LS RA + + VL +S ++ G+ Sbjct: 128 TRVRVFGFTDDL-GSSAHGDV--LSKRRANAVHDVLSQSLNDAGITYEVRGYGEQYPIAD 184 Query: 324 SDPMNSA--NRRIDI 336 + NRR+++ Sbjct: 185 NSTEAGRKKNRRVEV 199 >gi|229496999|ref|ZP_04390704.1| immunogenic 75 kDa protein PG4 [Porphyromonas endodontalis ATCC 35406] gi|229316101|gb|EEN82029.1| immunogenic 75 kDa protein PG4 [Porphyromonas endodontalis ATCC 35406] Length = 691 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 34/136 (25%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 + S+ LPE+ V L +I ++L + V+ + H D N LS RA + Sbjct: 537 FYAFDSADLLPESKVALDQIAKILQDNPEVVVELSSHADRV---GSDAYNLGLSDRRARA 593 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------------------------- 327 L G+ D++ + G+ R ++ S + Sbjct: 594 VVDYLKGKGIPADQL-QPKGYGKSRPRVISSALHVLYPQFPEGTILDEAFVTALSEEDKK 652 Query: 328 --NSANRRIDILVEDR 341 ++ NRR + +V DR Sbjct: 653 IADALNRRTEFIVIDR 668 >gi|192361426|ref|YP_001981532.1| outer membrane protein [Cellvibrio japonicus Ueda107] gi|190687591|gb|ACE85269.1| outer membrane protein [Cellvibrio japonicus Ueda107] Length = 154 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD E+ VL + L ++ + + GH D R N L RA + Sbjct: 55 FDFDQYALTAESRAVLLAHADKLKGASVAVRLEGHADE---RGSREYNMALGEKRANAVR 111 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L+ GVS + +S F + + S NRR++I Sbjct: 112 DFLVTQGVSGSSLEVVS-FGEEQPVALGHDESAWSQNRRVEI 152 >gi|124386037|ref|YP_001026945.1| OmpA family protein [Burkholderia mallei NCTC 10229] gi|217420891|ref|ZP_03452396.1| outer membrane protein A [Burkholderia pseudomallei 576] gi|217396303|gb|EEC36320.1| outer membrane protein A [Burkholderia pseudomallei 576] Length = 179 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 56 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 112 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 113 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 169 >gi|115522545|ref|YP_779456.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516492|gb|ABJ04476.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 628 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S P+ + LQ I + L + E I GHTDA+ DN LS R Sbjct: 503 FESGSWDIAPDQALKLQAIADGLNRAIERNPREVFLIEGHTDAT---GNDTDNLSLSDRR 559 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA +L + GV + ++ G+ LK+ + ANRR+ + Sbjct: 560 AESAAALLTQQFGVPAENLTS-QGYGEQYLKVPTQGPELANRRVTV 604 >gi|317491503|ref|ZP_07949939.1| OmpA transmembrane domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921050|gb|EFV42373.1| OmpA transmembrane domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 351 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 16/121 (13%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + P+ L ++ L++ + + G+TD + N +LS Sbjct: 223 KSDVLFNFNKATLKPQGQQALDQMYAQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 279 Query: 289 LDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSA---------NRRIDILV 338 RA S L+ G+ D+IS + G A D + + +RR++I V Sbjct: 280 EQRAQSVVDYLVSKGIPADKISARGMGKADPVTGSTCDNVKARAALIECLAPDRRVEIEV 339 Query: 339 E 339 + Sbjct: 340 K 340 >gi|126728387|ref|ZP_01744203.1| OmpA/MotB family protein [Sagittula stellata E-37] gi|126711352|gb|EBA10402.1| OmpA/MotB family protein [Sagittula stellata E-37] Length = 168 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE VL + L +++ ++ I GH D N L R Sbjct: 57 DRVLFAVDQSSLSPEARTVLDGQAQWLMTNSDYMAVIEGHADEQ---GTREYNLALGARR 113 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337 A + + L+ GVS+ R+ +S + R + + + NRR + ++ Sbjct: 114 ANAVMEYLVSRGVSQSRLKFVS-YGKERPIEICSEEACYAKNRRAVTVI 161 >gi|254689864|ref|ZP_05153118.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 6 str. 870] gi|256258118|ref|ZP_05463654.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 9 str. C68] gi|260755394|ref|ZP_05867742.1| OmpA family protein [Brucella abortus bv. 6 str. 870] gi|260884410|ref|ZP_05896024.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 9 str. C68] gi|297248966|ref|ZP_06932674.1| outer membrane lipoprotein omp16 [Brucella abortus bv. 5 str. B3196] gi|260675502|gb|EEX62323.1| OmpA family protein [Brucella abortus bv. 6 str. 870] gi|260873938|gb|EEX81007.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 9 str. C68] gi|297174099|gb|EFH33456.1| outer membrane lipoprotein omp16 [Brucella abortus bv. 5 str. B3196] Length = 168 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D S NRR + V + G Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167 >gi|27375632|ref|NP_767161.1| hypothetical protein blr0521 [Bradyrhizobium japonicum USDA 110] gi|27348769|dbj|BAC45786.1| blr0521 [Bradyrhizobium japonicum USDA 110] Length = 745 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 F+ S P+ LQ I + L + V+ I GHTDA DN LS R Sbjct: 619 FETGSWTIPPDQAAKLQVIADGLNRAIQANPRVVFLIEGHTDAV---GNEVDNLSLSDRR 675 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA ++L + GV + ++ G+ LK + ++ NRR+ + Sbjct: 676 AQSAAELLTQQFGVPAENLTS-QGYGEQYLKEQTQGPSAINRRVTV 720 >gi|225628264|ref|ZP_03786298.1| peptidoglycan-associated lipoprotein [Brucella ceti str. Cudo] gi|225616110|gb|EEH13158.1| peptidoglycan-associated lipoprotein [Brucella ceti str. Cudo] Length = 183 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 74 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 130 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D S NRR + V + G Sbjct: 131 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 182 >gi|167918843|ref|ZP_02505934.1| ompA family protein [Burkholderia pseudomallei BCC215] Length = 290 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++L+ + + G+TD N RLS +RA + Sbjct: 183 FEDISADGRRQLGDLVASIKAKILSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 237 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 238 ADYMIAEGIPAAKITAVGRGAAEPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 290 >gi|4580965|gb|AAD24552.1|AF117960_1 OprF [Pseudomonas agarici] Length = 322 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++G+TD N +LS RA++ Sbjct: 221 FDFDKSVVKPNSYADIKNLADFMKQYPQTSTVVKGYTDNV---GTDAYNQKLSERRAHAV 277 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMN--SANRRID 335 QVL + GV + R+S + G+ + ++ + NRR++ Sbjct: 278 AQVLTNQYGVEQSRVSSL-GYGKNNPAASNATKEGQAINRRVE 319 >gi|297518161|ref|ZP_06936547.1| outer membrane protein A [Escherichia coli OP50] Length = 171 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 43 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 99 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 100 ERRAQSVVDYLISKGIPADKISA-RGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 158 Query: 338 VE 339 V+ Sbjct: 159 VK 160 >gi|99082204|ref|YP_614358.1| OmpA/MotB [Ruegeria sp. TM1040] gi|99038484|gb|ABF65096.1| OmpA/MotB [Ruegeria sp. TM1040] Length = 167 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE V+L L + V++I GH D R N L R Sbjct: 57 DRVLFLVDQSSISPEAQVILDGQARWLQANPAYVVTIEGHADE---RGTREYNLALGASR 113 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A SA L+ GV+ RI +S G + NRR Sbjct: 114 ANSARDYLISKGVAASRIQTVSFGKERPIEICSEQSCYEKNRR 156 >gi|149202853|ref|ZP_01879824.1| peptidoglycan-associated lipoprotein [Roseovarius sp. TM1035] gi|149143399|gb|EDM31435.1| peptidoglycan-associated lipoprotein [Roseovarius sp. TM1035] Length = 172 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 11/106 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSL 289 + +F S + L L +T I GH D N L Sbjct: 62 DRVLFAVDQSTLGSDAQATLDGQANWL--TTNRDFTAVIEGHADEQ---GTREYNLALGA 116 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 RA + + L+ GVS +R+ ++ + R +++ + NRR Sbjct: 117 RRANAVQEYLIGRGVSPNRL-RVVSYGKERPIEICSNEACYAKNRR 161 >gi|90415116|ref|ZP_01223071.1| hypothetical OmpA family protein [Photobacterium profundum 3TCK] gi|90323761|gb|EAS40380.1| hypothetical OmpA family protein [Photobacterium profundum 3TCK] Length = 252 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 18/160 (11%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-------FDKSS 241 K + +D+ + + D E R + + + + F S Sbjct: 85 KSQNEDMVELTARNTELERIDVNYNQAQIEIARLQQDLQLQSEERQALMLEVNVHFRTGS 144 Query: 242 SIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 S P L +I E++ S E+ + G+ D R ++ N+ LS+ R + L Sbjct: 145 SDIEPLFQQQLDEIAELMKQSPEMSWQLAGYADR---RGDSQKNFDLSMRRVDAVRDYLE 201 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDI 336 G+ D++ + + + N N RR+ + Sbjct: 202 SQGIDTDQLL-VDAYGDLEPLKSE--QNFENDFFDRRVTL 238 >gi|294678953|ref|YP_003579568.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477773|gb|ADE87161.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 311 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F +S L + + LA E I++ GHTD N LS DR Sbjct: 201 DDLVFASGASQLAEGDFASLSALADYLATRPEARIALVGHTDN---SGALAANIALSRDR 257 Query: 292 AYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILV 338 A + + L++ GV ++S +G+ R + NRR++ ++ Sbjct: 258 AAAVRKRLIEKLGVPAGQLSAEGAGWLSPRSSNLTPEGRDKNRRVEAVL 306 >gi|116624434|ref|YP_826590.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116227596|gb|ABJ86305.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 508 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 87/235 (37%), Gaps = 17/235 (7%) Query: 106 ITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEK 165 I + + + + + + +++Q+++ +S + + + + Sbjct: 269 IAERRAQEQNLAAARSTAAAAEQEKLQAQADAQRAKVEADSARAQIDAERAARQQAEAAA 328 Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 + + + A R + + +K S + + +++ + T G++ Sbjct: 329 AAAESRAAAGADRAAATPPAALPAPRREAVDQK--SQVRMRLLESLNGLLPSRDTPRGLI 386 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +++ DQ +S+ + + + V A ++I G TD++ + Sbjct: 387 VTVPDQG-----FNGASLRTDYSERLARVAAVVAAEQGLRMTIEGSTDSAATES------ 435 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L++ RAY +M+ G+ + G R ++ + NRR++I++ Sbjct: 436 -LAMKRAYEVRDAMMRGGLPSSSVDA-RGLGASRPLTSNGTESGRSTNRRVEIVI 488 >gi|332300857|ref|YP_004442778.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177920|gb|AEE13610.1| OmpA/MotB domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 665 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD++S PE L + +L + + + HTD + N +LS RA S Sbjct: 538 FDRAS--LRPEGKKSLDYLITLLEQNPDVRLELSSHTDR---KGSQAYNQKLSQRRAQSV 592 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 L+ G++ DR+ G+ R + + M + Sbjct: 593 VDYLIAKGIAADRLEA-RGYGKERPYVVTKGMAAR 626 >gi|254700357|ref|ZP_05162185.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 5 str. 513] gi|261750850|ref|ZP_05994559.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 5 str. 513] gi|261740603|gb|EEY28529.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 5 str. 513] Length = 168 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D S NRR + V + G Sbjct: 116 AAATRDFLASRGVPANRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167 >gi|121604950|ref|YP_982279.1| OmpA domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593919|gb|ABM37358.1| OmpA domain protein [Polaromonas naphthalenivorans CJ2] Length = 179 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE V++ L A+ ++I GHTD N L RA + Sbjct: 78 FDFDSYVVKPEFQSVIEAHARYLTANKARKMAIEGHTDEI---GGREYNLALGQKRAEAV 134 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 + L GV++ ++ +S F + + + + NRR +I Sbjct: 135 RRALGLLGVTDSQVEAVS-FGKEKPAVPGLDEASMAKNRRAEI 176 >gi|320324886|gb|EFW80958.1| ompA family protein [Pseudomonas syringae pv. glycinea str. B076] Length = 240 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 9/201 (4%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + S D + + ++ I + ++E + L ++ S+ Sbjct: 28 SGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAHYAYLSS 87 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETT 220 + + N L K+ +++ +L AK S+ G ++ + + T Sbjct: 88 RYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILSLATTET 147 Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRN 279 G+++++ D +FD + + K+ + L + + I G+TD++ Sbjct: 148 DRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTDST---G 200 Query: 280 IARDNWRLSLDRAYSAYQVLM 300 ++N +LS DRA + VLM Sbjct: 201 DRQENLKLSKDRAQAVADVLM 221 >gi|322421507|ref|YP_004200730.1| OmpA/MotB domain-containing protein [Geobacter sp. M18] gi|320127894|gb|ADW15454.1| OmpA/MotB domain protein [Geobacter sp. M18] Length = 1714 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 9/110 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDAS----PFRNIARDNWRLSLDR 291 F + E + +L+ + E + + GH D P + DN LS +R Sbjct: 114 FRTGDAEITREYLELLRGVLEKMRGRNNVRLHFVGHADTQQLHGPLQEKFGDNTGLSRER 173 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A + + ++ G+ + I G + ++ + + NRR+++ V Sbjct: 174 AGTTAEYCQRALGLPPEAI-SYEGMGDGKPVASNSTEEGRALNRRVEVEV 222 >gi|315122875|ref|YP_004063364.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496277|gb|ADR52876.1| OmpA/MotB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 152 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 + FD +S PE I VL +G L + I GHTD + L L RA Sbjct: 42 DRIFFDINSYSIRPEDIQVLSSLGSWLEKNGCDFIIEGHTDEQ---GTRNSSLVLGLRRA 98 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVE 339 ++ + + G++ R+ KI+ + + + S NRR I+++ Sbjct: 99 HTVFDYFLARGINSSRM-KITSYGKEIPAVLGYDESAYSKNRRTVIVLQ 146 >gi|307318588|ref|ZP_07598022.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] gi|306895928|gb|EFN26680.1| OmpA/MotB domain protein [Sinorhizobium meliloti AK83] Length = 489 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V + + +VL I GHTDA + N LS +R Sbjct: 375 FATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 431 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + G+ + + G+ LKI +D NRR+ I Sbjct: 432 AESVAVLLTEVYGIPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 476 >gi|323528823|ref|YP_004230975.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323385825|gb|ADX57915.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 242 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 17/137 (12%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPL---PETIVVLQKIGEVLAHSTEV--ISIRGHTD 273 + + +F S P P L +I + V +++ GHTD Sbjct: 110 VAPQTATLENFSLESDALFPFGKSSPESMLPAAKARLDEIAARIRQHEHVSAVTVVGHTD 169 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--- 330 N LSL RA + L+ G+ I G + ++ Sbjct: 170 RL---GPESINGPLSLARANTVRDYLVAHGLDGSIIHA-KGVGSSEPRTHCAEGDARALI 225 Query: 331 -----NRRIDILVEDRQ 342 +R + I VE R+ Sbjct: 226 ACLQQDRYVSITVEGRK 242 >gi|162449046|ref|YP_001611413.1| hypothetical protein sce0776 [Sorangium cellulosum 'So ce 56'] gi|161159628|emb|CAN90933.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 286 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 80/209 (38%), Gaps = 23/209 (11%) Query: 145 NSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS 204 + +++ K+L ++ + + + + E+ KK + +I + L+ Sbjct: 77 EEQRKSNQRAKELEQTLSQVRGELEAKTAQIEKGEAERQQTEAAKKSGVERVGQIKAELA 136 Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA---- 260 G + ++ KGV G + + + +F ++ P+ +L ++ L+ Sbjct: 137 GKLDKHVKKGVAAVAVAEGQ--AFVALSESAVFLPNTVDVSPQGQALLCQVSGALSASGG 194 Query: 261 -HSTEVI-SIRGHTDASP--FRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGF 315 + + ++ G + P + W LS RA + Q L V+ R+S + G+ Sbjct: 195 GQAPLRVGAVSGPPASVPAPLQAAYPTPWELSAVRAATVTQTLQDKCSVAGARLSAV-GY 253 Query: 316 AHHRLKIAS------DPMNSANRRIDILV 338 A H A+ P R++I V Sbjct: 254 AEHDPAAAALGETKLPPG-----RVEIAV 277 >gi|91224215|ref|ZP_01259478.1| putative outer membrane protein OmpA [Vibrio alginolyticus 12G01] gi|269965628|ref|ZP_06179741.1| putative outer membrane protein OmpA [Vibrio alginolyticus 40B] gi|91191126|gb|EAS77392.1| putative outer membrane protein OmpA [Vibrio alginolyticus 12G01] gi|269829696|gb|EEZ83932.1| putative outer membrane protein OmpA [Vibrio alginolyticus 40B] Length = 326 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 20/146 (13%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 K + + A IV V T + FD S+ + L Sbjct: 186 EKAVEEVVEARPATRIVDHVYPAQTTATVQ-----------FDLESAEVKDASN--LSGT 232 Query: 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 +++ + + I G++D + A N +L+ RA + G++ +R++ + G Sbjct: 233 VDLMNTYPQAQVEITGYSDTT---GSAAYNKQLTEKRAKAVADEFQAKGIAAERMT-VKG 288 Query: 315 FAHHRLKIASDP--MNSANRRIDILV 338 +++ NRR++++V Sbjct: 289 MGEANPVASNETRQGRQMNRRVEVVV 314 >gi|94267383|ref|ZP_01290861.1| OmpA/MotB [delta proteobacterium MLMS-1] gi|93452026|gb|EAT02724.1| OmpA/MotB [delta proteobacterium MLMS-1] Length = 388 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 7/97 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + P L + + L E I I GHT A N +LS RA + Sbjct: 279 FEFDQARIRPADQAALGRFAQFLKKYPELEEIEIAGHTCNM---GPAEYNRQLSQRRAAN 335 Query: 295 AYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSA 330 + L++ G++ +R+ G+ + ++D + Sbjct: 336 VVKFLVEKEGIASERLLA-KGYGSDKPIASNDTVAGR 371 >gi|28898249|ref|NP_797854.1| hypothetical protein VP1475 [Vibrio parahaemolyticus RIMD 2210633] gi|308125351|ref|ZP_05774746.2| outer membrane protein [Vibrio parahaemolyticus K5030] gi|28806466|dbj|BAC59738.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308113621|gb|EFO51161.1| outer membrane protein [Vibrio parahaemolyticus K5030] Length = 300 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 69 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 128 Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L+ D + + +L +D + F S+ P+ + L Sbjct: 129 LDYVLTQTTCTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 182 Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + +L + + GH D N +L+ +RA + L GV+ DR+ + Sbjct: 183 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVTSDRV-Q 238 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340 NRR+ I V Sbjct: 239 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 269 >gi|317051743|ref|YP_004112859.1| peptidoglycan-associated lipoprotein [Desulfurispirillum indicum S5] gi|316946827|gb|ADU66303.1| peptidoglycan-associated lipoprotein [Desulfurispirillum indicum S5] Length = 187 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ VL L ++ I I GH D R + N L RA S Sbjct: 85 FDFDRSSIRPDARKVLDNNIAYLKNNPNARIVIEGHCDE---RGSSDYNLALGDRRAQSV 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337 L+ G+ R++ IS + S+ NRR + + Sbjct: 142 KDYLVTGGIDASRLTTISYGKERPVDPRSNEWAWQKNRRGEFV 184 >gi|308094644|ref|ZP_05890943.2| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308095659|ref|ZP_05907392.2| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308126475|ref|ZP_05910381.2| outer membrane protein [Vibrio parahaemolyticus AQ4037] gi|308087973|gb|EFO37668.1| outer membrane protein [Vibrio parahaemolyticus Peru-466] gi|308091063|gb|EFO40758.1| outer membrane protein [Vibrio parahaemolyticus AN-5034] gi|308107721|gb|EFO45261.1| outer membrane protein [Vibrio parahaemolyticus AQ4037] Length = 284 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 53 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 112 Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L+ D + + +L +D + F S+ P+ + L Sbjct: 113 LDYVLTQTTCTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 166 Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + +L + + GH D N +L+ +RA + L GV+ DR+ + Sbjct: 167 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVTSDRV-Q 222 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340 NRR+ I V Sbjct: 223 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 253 >gi|239979676|ref|ZP_04702200.1| secreted protein [Streptomyces albus J1074] Length = 186 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F K S+ PE +Q I E A + + G TD +LS +RA + Sbjct: 67 LFGKDSAKLNPEARGRIQAIAEEAQAQQANKVRVFGFTDDL---GSYEHGKKLSKNRADA 123 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 ++ L+K+ + + ++ G++ + NRR+++ Sbjct: 124 VHEELVKT-LGPNVTYEVRGYSEDYPIADNSTEAGRMKNRRVEV 166 >gi|254429703|ref|ZP_05043410.1| OmpA family protein [Alcanivorax sp. DG881] gi|196195872|gb|EDX90831.1| OmpA family protein [Alcanivorax sp. DG881] Length = 368 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + ++ + + L I + GH D++ A N LS RA S Sbjct: 257 FGFDRDTIQGQFSDEIKGVADRLNAGEQGRIRVEGHADST---GPADYNQGLSERRAQSV 313 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 +++ V D+I+ GF + + + NRR DI+VE + Sbjct: 314 KDRLMKDFSVGADKIT-TEGFGESKPVADNSTADGRAKNRRADIIVETEE 362 >gi|224824631|ref|ZP_03697738.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] gi|224603124|gb|EEG09300.1| OmpA/MotB domain protein [Lutiella nitroferrum 2002] Length = 218 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 19/122 (15%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + + L + L + + GHTD + + N LS R Sbjct: 93 KVLFDFNKTNLRADAKNELDPLVSRLKGDANLKSVEVDGHTD---YLGSEKYNQALSQKR 149 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-------------PMNSANRRIDILV 338 A + + +GV ++++ + G K+ + +RR+++ + Sbjct: 150 ADAVKNYFVAAGVPAEKVTAV-GKGESEAKLTDECKAKKFKKKAALQACLEGDRRVELTI 208 Query: 339 ED 340 + Sbjct: 209 DT 210 >gi|163732772|ref|ZP_02140217.1| OmpA family domain protein [Roseobacter litoralis Och 149] gi|161394132|gb|EDQ18456.1| OmpA family domain protein [Roseobacter litoralis Och 149] Length = 217 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ E + +I E L + + + G TDA + ++ RL L RA + Sbjct: 23 FAFDSAELDAEAQAKIVEIAERLKENPSYKPTVLIGFTDA--VGGLGYND-RLGLRRANA 79 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L++ GVS DRI +S L ++ NRR+ + + Sbjct: 80 VSAALLEQGVSVDRIGGVSSRGERELLVSVAGPERQNRRVTVTL 123 >gi|126737228|ref|ZP_01752963.1| peptidoglycan-associated lipoprotein [Roseobacter sp. SK209-2-6] gi|126721813|gb|EBA18516.1| peptidoglycan-associated lipoprotein [Roseobacter sp. SK209-2-6] Length = 172 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S E +LQ L + V++I+GH D N L R Sbjct: 62 DRVLFPVDQSTLSAEATTILQGQARWLTANPDYVVTIQGHADEQ---GTREYNLALGARR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A A L+ G++ RI ++ F R +++ + NRR Sbjct: 119 ANEARDFLIGQGIAGTRI-QVVSFGKERPLEICSAESCYAKNRR 161 >gi|149911636|ref|ZP_01900247.1| OmpA family protein [Moritella sp. PE36] gi|149805306|gb|EDM65320.1| OmpA family protein [Moritella sp. PE36] Length = 211 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 11/178 (6%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR-- 221 E + P E + K+ + DL+ + + + + + Sbjct: 17 ETIAEIQAKAAAPSTPTETTVMPKQMAQENDLSDDDADGVIAYREQCLNSVLGSQVNNSG 76 Query: 222 -TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279 G ++ + Q F +S++ P ++ + + H + + I GH+ Sbjct: 77 CGGDTVNKVRQELKVNFSNNSAVISPRYFADIKALSNFMQHYPDLDVVIEGHSSRQ---G 133 Query: 280 IARDNWRLSLDRAYSAYQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 A N LS RA + +L+ K G+S R+S I G+ RL + + NRRI Sbjct: 134 SAALNMDLSQRRAQAVMDLLINKFGISTSRVSAI-GYGFERLLDEGNNSYAHQRNRRI 190 >gi|145298279|ref|YP_001141120.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851051|gb|ABO89372.1| outer membrane protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 352 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + PE + L + + + + G+TD +N LS RA Sbjct: 224 LFAFGKAELKPEGMQALDALYQQIVDVQPKDGSALVMGYTDRI---GSDINNLALSEARA 280 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + L+ G+ D++ I G S D + + +RR+++ V Sbjct: 281 STVANFLIGKGLPADKV-SIQGNGESNPVTGSQCDAIKAKAALIDCLGPDRRVEVRVTGV 339 Query: 342 QG 343 QG Sbjct: 340 QG 341 >gi|126661868|ref|ZP_01732867.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38] gi|126625247|gb|EAZ95936.1| outer membrane protein, OmpA family [Flavobacteria bacterium BAL38] Length = 274 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 11/101 (10%) Query: 246 PETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGV 304 PE+ L + ++ ++ E I I+GH + N LS DRA + L+ +G+ Sbjct: 178 PESQGTLYDLLFIMQNNPELKIEIQGHICCI---DKDYRN--LSTDRAKQIKRFLVYNGI 232 Query: 305 SEDRISKISGFAHHRL----KIASDPMNSANRRIDILVEDR 341 + R+ K GF + A+ + NRR++I + + Sbjct: 233 QDYRV-KTKGFGVSQPIHPIPEATPEQAAENRRVEIEILSK 272 >gi|319762344|ref|YP_004126281.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans BC] gi|330825735|ref|YP_004389038.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans K601] gi|317116905|gb|ADU99393.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans BC] gi|329311107|gb|AEB85522.1| peptidoglycan-associated lipoprotein [Alicycliphilus denitrificans K601] Length = 180 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE VL+ L S+ + + GHTD R N L RA + Sbjct: 79 FDFDSFTVKPEYQSVLEGHSRYLKASSARKVMLEGHTDE---RGGREYNLALGQKRAEAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + L GV + ++ +S + + S+ + NRR+++ Sbjct: 136 RRSLALLGVPDAQMEAVS-YGEEKPAAQGHSESAFAQNRRVEL 177 >gi|145297230|ref|YP_001140071.1| outer membrane protein A [Aeromonas salmonicida subsp. salmonicida A449] gi|142850002|gb|ABO88323.1| outer membrane protein A [Aeromonas salmonicida subsp. salmonicida A449] Length = 368 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F+ + + P L + +++A + ++ GHTD + A N LS RA Sbjct: 249 LFEFNKATLKPAASHALDTLFSQIVAANPKDGAATVVGHTD--RIGSDAY-NQALSEQRA 305 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD------PM----NSANRRIDILVE 339 + L+ G+ D++ ++ G ++ P + +RR++I +E Sbjct: 306 RTVADYLIAKGLFADKV-RVEGRGKSSPVTGNNCTTGSRPALIACLAPDRRVEIHLE 361 >gi|308271860|emb|CBX28468.1| hypothetical protein N47_G37920 [uncultured Desulfobacterium sp.] Length = 191 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S++ +L+K L + + ++I GH D R N L RA SA Sbjct: 90 FDYDSAVLSQSAQEILKKKAAYLEKYSAILVTIEGHCDD---RGTNEYNLALGEKRAQSA 146 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 L+ G+S RI IS + + ++ + NRR Sbjct: 147 RNFLINLGISSSRIKTIS-YGEEKPLDPANNEVAWAKNRR 185 >gi|37704650|gb|AAR01597.1| OprF [Pseudomonas sp. MFY138] Length = 314 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 231 FDFDKSVVKPNSYGDIKNLADFMTQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 287 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 288 KQVLTNQYGVESSRVQSV-GYGESRPVA 314 >gi|17986623|ref|NP_539257.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1 str. 16M] gi|23502553|ref|NP_698680.1| Pal family lipoprotein [Brucella suis 1330] gi|62290567|ref|YP_222360.1| Pal family lipoprotein [Brucella abortus bv. 1 str. 9-941] gi|82700483|ref|YP_415057.1| outer membrane protein MotY [Brucella melitensis biovar Abortus 2308] gi|148560405|ref|YP_001259548.1| outer membrane lipoprotein Omp16 [Brucella ovis ATCC 25840] gi|161619624|ref|YP_001593511.1| peptidoglycan-associated lipoprotein [Brucella canis ATCC 23365] gi|163845274|ref|YP_001622929.1| peptidoglycan-associated lipoprotein [Brucella suis ATCC 23445] gi|189024786|ref|YP_001935554.1| outer membrane protein [Brucella abortus S19] gi|225853150|ref|YP_002733383.1| peptidoglycan-associated lipoprotein [Brucella melitensis ATCC 23457] gi|237816073|ref|ZP_04595069.1| peptidoglycan-associated lipoprotein [Brucella abortus str. 2308 A] gi|254694357|ref|ZP_05156185.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 3 str. Tulya] gi|254698015|ref|ZP_05159843.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 2 str. 86/8/59] gi|254703474|ref|ZP_05165302.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 3 str. 686] gi|254708437|ref|ZP_05170265.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis M163/99/10] gi|254708710|ref|ZP_05170521.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis B2/94] gi|254719698|ref|ZP_05181509.1| peptidoglycan-associated lipoprotein [Brucella sp. 83/13] gi|254730899|ref|ZP_05189477.1| peptidoglycan-associated lipoprotein [Brucella abortus bv. 4 str. 292] gi|256030236|ref|ZP_05443850.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis M292/94/1] gi|256045306|ref|ZP_05448200.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1 str. Rev.1] gi|256061733|ref|ZP_05451870.1| peptidoglycan-associated lipoprotein [Brucella neotomae 5K33] gi|256114264|ref|ZP_05455009.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 3 str. Ether] gi|256160411|ref|ZP_05458100.1| peptidoglycan-associated lipoprotein [Brucella ceti M490/95/1] gi|256255617|ref|ZP_05461153.1| peptidoglycan-associated lipoprotein [Brucella ceti B1/94] gi|256263357|ref|ZP_05465889.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 2 str. 63/9] gi|256370104|ref|YP_003107615.1| lipoprotein, Pal family [Brucella microti CCM 4915] gi|260167911|ref|ZP_05754722.1| lipoprotein, Pal family [Brucella sp. F5/99] gi|260547188|ref|ZP_05822926.1| peptidoglycan-associated lipoprotein [Brucella abortus NCTC 8038] gi|260565803|ref|ZP_05836286.1| outer membrane lipoprotein omp16 [Brucella melitensis bv. 1 str. 16M] gi|260568781|ref|ZP_05839249.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 4 str. 40] gi|260758616|ref|ZP_05870964.1| outer membrane lipoprotein [Brucella abortus bv. 4 str. 292] gi|260762448|ref|ZP_05874785.1| outer membrane lipoprotein [Brucella abortus bv. 2 str. 86/8/59] gi|261214665|ref|ZP_05928946.1| outer membrane lipoprotein [Brucella abortus bv. 3 str. Tulya] gi|261222819|ref|ZP_05937100.1| peptidoglycan-associated lipoprotein [Brucella ceti B1/94] gi|261315938|ref|ZP_05955135.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis M163/99/10] gi|261316200|ref|ZP_05955397.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis B2/94] gi|261325736|ref|ZP_05964933.1| peptidoglycan-associated lipoprotein [Brucella neotomae 5K33] gi|261754103|ref|ZP_05997812.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 3 str. 686] gi|261757348|ref|ZP_06001057.1| peptidoglycan-associated lipoprotein [Brucella sp. F5/99] gi|265984712|ref|ZP_06097447.1| peptidoglycan-associated lipoprotein [Brucella sp. 83/13] gi|265987263|ref|ZP_06099820.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis M292/94/1] gi|265991730|ref|ZP_06104287.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1 str. Rev.1] gi|265995567|ref|ZP_06108124.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 3 str. Ether] gi|265998778|ref|ZP_06111335.1| peptidoglycan-associated lipoprotein [Brucella ceti M490/95/1] gi|306837843|ref|ZP_07470705.1| peptidoglycan-associated lipoprotein [Brucella sp. NF 2653] gi|306841414|ref|ZP_07474116.1| peptidoglycan-associated lipoprotein [Brucella sp. BO2] gi|61229452|sp|P0A3S7|OMP16_BRUME RecName: Full=Outer membrane lipoprotein omp16; AltName: Full=16.5 kDa minor OMP; Short=16 kDa OMP; AltName: Full=Minor outer membrane protein omp16; Flags: Precursor gi|61229453|sp|P0A3S8|OMP16_BRUSU RecName: Full=Outer membrane lipoprotein omp16; AltName: Full=16.5 kDa minor OMP; Short=16 kDa OMP; AltName: Full=Minor outer membrane protein omp16; Flags: Precursor gi|61229455|sp|P0A3S9|OMP16_BRUAB RecName: Full=Outer membrane lipoprotein omp16; AltName: Full=16.5 kDa minor OMP; Short=16 kDa OMP; AltName: Full=Minor outer membrane protein omp16; Flags: Precursor gi|13898977|gb|AAK48919.1|AF358662_6 Pal protein [Brucella melitensis] gi|538293|gb|AAA59360.1| Omp16 [Brucella abortus bv. 1] gi|17982237|gb|AAL51521.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1 str. 16M] gi|23348553|gb|AAN30595.1| lipoprotein, Pal family [Brucella suis 1330] gi|62196699|gb|AAX74999.1| lipoprotein, Pal family [Brucella abortus bv. 1 str. 9-941] gi|82616584|emb|CAJ11663.1| MotY protein:Bacterial outer membrane protein:OmpA/MotB domain [Brucella melitensis biovar Abortus 2308] gi|148371662|gb|ABQ61641.1| outer membrane lipoprotein Omp16 (Minor outer membraneprotein omp16) (16 kDa OMP) (16.5 kDa minor OMP) [Brucella ovis ATCC 25840] gi|161336435|gb|ABX62740.1| peptidoglycan-associated lipoprotein [Brucella canis ATCC 23365] gi|163675997|gb|ABY40107.1| peptidoglycan-associated lipoprotein [Brucella suis ATCC 23445] gi|189020358|gb|ACD73080.1| Bacterial outer membrane protein [Brucella abortus S19] gi|225641515|gb|ACO01429.1| peptidoglycan-associated lipoprotein [Brucella melitensis ATCC 23457] gi|237788736|gb|EEP62948.1| peptidoglycan-associated lipoprotein [Brucella abortus str. 2308 A] gi|256000267|gb|ACU48666.1| lipoprotein, Pal family [Brucella microti CCM 4915] gi|260095553|gb|EEW79431.1| peptidoglycan-associated lipoprotein [Brucella abortus NCTC 8038] gi|260151176|gb|EEW86271.1| outer membrane lipoprotein omp16 [Brucella melitensis bv. 1 str. 16M] gi|260154165|gb|EEW89247.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 4 str. 40] gi|260668934|gb|EEX55874.1| outer membrane lipoprotein [Brucella abortus bv. 4 str. 292] gi|260672874|gb|EEX59695.1| outer membrane lipoprotein [Brucella abortus bv. 2 str. 86/8/59] gi|260916272|gb|EEX83133.1| outer membrane lipoprotein [Brucella abortus bv. 3 str. Tulya] gi|260921403|gb|EEX88056.1| peptidoglycan-associated lipoprotein [Brucella ceti B1/94] gi|261295423|gb|EEX98919.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis B2/94] gi|261301716|gb|EEY05213.1| peptidoglycan-associated lipoprotein [Brucella neotomae 5K33] gi|261304964|gb|EEY08461.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis M163/99/10] gi|261737332|gb|EEY25328.1| peptidoglycan-associated lipoprotein [Brucella sp. F5/99] gi|261743856|gb|EEY31782.1| peptidoglycan-associated lipoprotein [Brucella suis bv. 3 str. 686] gi|262553467|gb|EEZ09236.1| peptidoglycan-associated lipoprotein [Brucella ceti M490/95/1] gi|262766851|gb|EEZ12469.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 3 str. Ether] gi|263002686|gb|EEZ15089.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 1 str. Rev.1] gi|263093357|gb|EEZ17426.1| peptidoglycan-associated lipoprotein [Brucella melitensis bv. 2 str. 63/9] gi|264659460|gb|EEZ29721.1| peptidoglycan-associated lipoprotein [Brucella pinnipedialis M292/94/1] gi|264663304|gb|EEZ33565.1| peptidoglycan-associated lipoprotein [Brucella sp. 83/13] gi|306288520|gb|EFM59872.1| peptidoglycan-associated lipoprotein [Brucella sp. BO2] gi|306407082|gb|EFM63299.1| peptidoglycan-associated lipoprotein [Brucella sp. NF 2653] gi|326409709|gb|ADZ66774.1| Bacterial outer membrane protein [Brucella melitensis M28] gi|326539416|gb|ADZ87631.1| peptidoglycan-associated lipoprotein [Brucella melitensis M5-90] Length = 168 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD SS+ + L K + L I+I GH D R N L R Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADE---RGTREYNLALGQRR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 A + L GV +R+ IS + + R D S NRR + V + G Sbjct: 116 AAATRDFLASRGVPTNRMRTIS-YGNERPVAVCDADTCWSQNRR-AVTVLNGAG 167 >gi|315637993|ref|ZP_07893178.1| chemotaxis protein MotB [Campylobacter upsaliensis JV21] gi|315481841|gb|EFU72460.1| chemotaxis protein MotB [Campylobacter upsaliensis JV21] Length = 314 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 107/325 (32%), Gaps = 57/325 (17%) Query: 30 LGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFD 85 W I YAD M L+ F+++ + K I++ N NL + + + D Sbjct: 9 GNFW-IAYADLMAGLLFIFILLIGAIVVKYVLTQSDLKIIKENLNTQEANLELSKQALKD 67 Query: 86 EQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKN 145 +++ I + + + + L + T Q +N Sbjct: 68 KES---------IVFQLSKELNATANTLNLIHT--------------------QKTELEN 98 Query: 146 SLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG 205 +++ S+ K+ D + I + K K K + I LS Sbjct: 99 NISTLSKDLKNNIDEKDRQILILLNQIELKENELKAIQQDFKEAKERVENLSLIRENLSK 158 Query: 206 LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-------- 257 + + + + + IS+ +FDK S I E + L+KI Sbjct: 159 ALQKKLDENISIDQKTGA--ISL---PAEVLFDKDSFILKDEAKISLKKILSGYLTGILD 213 Query: 258 ---VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE--DRISKI 312 + + I I GHTD+ N LS RAY + E ++ Sbjct: 214 DENISKNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMSFIYSFYKDERLQKLLMA 269 Query: 313 SGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + + +RRI+I Sbjct: 270 SGRSFSVPILKNGVEDKDLSRRIEI 294 >gi|167911995|ref|ZP_02499086.1| OmpA family protein [Burkholderia pseudomallei 112] gi|254203932|ref|ZP_04910292.1| OmpA family protein [Burkholderia mallei FMH] gi|254295613|ref|ZP_04963071.1| ompA family protein [Burkholderia pseudomallei 406e] gi|147745444|gb|EDK52524.1| OmpA family protein [Burkholderia mallei FMH] gi|157805511|gb|EDO82681.1| ompA family protein [Burkholderia pseudomallei 406e] Length = 200 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 77 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 133 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 134 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 190 >gi|145588679|ref|YP_001155276.1| OmpA/MotB domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047085|gb|ABP33712.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 187 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 ++D + S PE L KI L+ + I G+TD+ N L RA S Sbjct: 81 LYDFNKSDLKPEGKATLDKIAADLSKIKLEVIIAVGNTDSV---GTDAYNMALGQRRAQS 137 Query: 295 AYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338 L+ GV RI + G ++ A+ + NRR DI V Sbjct: 138 VKTYLVSKGVDASRIYTESKGKSNPVASNATAEGRAKNRRTDIEV 182 >gi|148553776|ref|YP_001261358.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148498966|gb|ABQ67220.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 373 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S E +L A + + + + GH D + N LS RA + Sbjct: 268 FFDWDKSDITAEAASILDNAANAYATTGQARVQLAGHADK---SGSDQYNVGLSQRRADA 324 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 L GV + I+ F R + + NRR++I Sbjct: 325 VKAYLAGKGVPDSAIT-TEAFGESRPLVDTADGVREPQNRRVEI 367 >gi|71065468|ref|YP_264195.1| OmpA/MotB family outer membrane protein [Psychrobacter arcticus 273-4] gi|71038453|gb|AAZ18761.1| outer membrane protein, OmpA/MotB family [Psychrobacter arcticus 273-4] Length = 172 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS ++ VL + ++L + + I GHTD R N L RA +A Sbjct: 72 FAFDSSEITSQSAGVLNQHADLLKSNPSAGVVIAGHTDE---RGSREYNIALGERRAQAA 128 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 L GV+ + I ++ + R A ++ + NRR ++ Sbjct: 129 RDYLAAQGVAANNI-RVISYGEERPAAAGTNEDAYAQNRRAEL 170 >gi|254524741|ref|ZP_05136796.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Stenotrophomonas sp. SKA14] gi|219722332|gb|EED40857.1| outer membrane lipoprotein, OmpA/SmpA/OmlA family [Stenotrophomonas sp. SKA14] Length = 280 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 14/111 (12%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S+ E +Q I +V + I + G+TD + + N LS RA Sbjct: 167 LFGFDSAKLSAEGQQAVQGILAQVREAAQVQSIRVTGYTD--RIGSASY-NQALSQRRAD 223 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 + L++ GV IS G + + N NRR+ I Sbjct: 224 AVRTALVQGGVPAGSISA-EGRGAAEPIVQCEQHNRRELIACLAPNRRVQI 273 >gi|37704600|gb|AAR01572.1| OprF [Pseudomonas sp. MFY30] gi|37704670|gb|AAR01607.1| OprF [Pseudomonas sp. MFY234] Length = 314 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 231 FDFDKSVVKPNSYGDIKNLADFMTQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 287 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 288 KQVLTNQYGVESSRVQSV-GYGESRPVA 314 >gi|323455133|gb|EGB11002.1| hypothetical protein AURANDRAFT_71054 [Aureococcus anophagefferens] Length = 1595 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 31/125 (24%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDAS-------------------- 275 F S +IPLP++ +L +I +VL + + GH ++ Sbjct: 586 FVGSRAIPLPKSQPLLAQILKVLQAHPGIAVRFEGHVNSKCGLDCDGSGGCPNGSSMCVK 645 Query: 276 -PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK---IASDPMNSAN 331 P + LS RA + Q ++ G+ DR+ GFA R + + + N Sbjct: 646 CPGGAMG-----LSTARADAVKQFILACGIEPDRVYA-QGFAGTRRLTGDVIDETVGHVN 699 Query: 332 RRIDI 336 RR+++ Sbjct: 700 RRVEV 704 >gi|325915597|ref|ZP_08177905.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas vesicatoria ATCC 35937] gi|325538157|gb|EGD09845.1| outer membrane protein/peptidoglycan-associated (lipo)protein [Xanthomonas vesicatoria ATCC 35937] Length = 439 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 16/129 (12%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFR 278 T G LI++ D +FD S P+ + VL + L T + + +RGHTDA + Sbjct: 319 TPCGYLITLND---RILFDFDKSDIRPDAVRVLDTLAAALGKVTTQQMEVRGHTDA---K 372 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331 N LS RA++ L G ++ + G+ + + +P N Sbjct: 373 GDDAYNQALSERRAHAVLAALRTRGAAQG--AGAKGYGESQPVAPNTVNGQDNPGGRQLN 430 Query: 332 RRIDILVED 340 RR++I + Sbjct: 431 RRVEIFLRT 439 >gi|167824061|ref|ZP_02455532.1| hypothetical protein Bpseu9_10300 [Burkholderia pseudomallei 9] Length = 290 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++ + + + G+TD N RLS +RA + Sbjct: 183 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 237 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 238 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 290 >gi|156976121|ref|YP_001447027.1| hypothetical protein VIBHAR_04892 [Vibrio harveyi ATCC BAA-1116] gi|156527715|gb|ABU72800.1| hypothetical protein VIBHAR_04892 [Vibrio harveyi ATCC BAA-1116] Length = 321 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + E++ + + I G++D + N +L+ RA + Sbjct: 211 FGLESAELQDSS--AFNGTVELMNTYPQAQVEINGYSDTT---GSEAYNQQLTEKRAQAV 265 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + G++ DR++ + G +++ NRR++++V Sbjct: 266 AEHFQAEGIAADRMT-VKGMGEANPVASNETREGREENRRVEVVV 309 >gi|146275632|ref|YP_001165792.1| OmpA/MotB domain-containing protein [Novosphingobium aromaticivorans DSM 12444] gi|145322323|gb|ABP64266.1| OmpA/MotB domain protein [Novosphingobium aromaticivorans DSM 12444] Length = 291 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P+ L + + G+TD+ N LS RA S Sbjct: 180 FDTGKYNLSPQAKAELCNAATTAEGIDNALMLVVGYTDSV---GDDEYNQTLSEKRANSV 236 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 L ++ R+ +G A ++D + NRR+ + V +G Sbjct: 237 INYLQQACRWKPYRMLTPTGMAKADPLASNDTEEGKAQNRRVAVNVLVSKG 287 >gi|260778838|ref|ZP_05887730.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605002|gb|EEX31297.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLS 288 +++ +F S P + + + + + I I+G+ AS N + LS Sbjct: 79 ERQLRILFANDSYDVSPVFSDQISAMADFMDRYRSASIEIQGY--ASKTGNSDYNV-ELS 135 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 RA + ++L+ G++ +R++ I GF L+ + ++ NRR+ Sbjct: 136 KKRAVAVEELLLSYGINPERVT-IVGFGATHLESTGEEETDHALNRRVT 183 >gi|300776234|ref|ZP_07086093.1| outer membrane protein [Chryseobacterium gleum ATCC 35910] gi|300505367|gb|EFK36506.1| outer membrane protein [Chryseobacterium gleum ATCC 35910] Length = 136 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 12/106 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD +S LP +L + S+ ++ G TD R N +LS RA + Sbjct: 30 FDLNSDRILPSNTPILNNAVNYINSSSGSYNVIGATDT---RGTDAYNQKLSERRANNVK 86 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 L+K+GV ++ I G LK +P N ANRR+ Sbjct: 87 NYLIKNGVQTGKLQAI-GKGEKDLKYPECEPATKCPEWKNRANRRV 131 >gi|149915595|ref|ZP_01904121.1| OmpA family domain protein [Roseobacter sp. AzwK-3b] gi|149810487|gb|EDM70330.1| OmpA family domain protein [Roseobacter sp. AzwK-3b] Length = 340 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRI-SKISGFAHHRLKI 322 +++ GHTD+ N LS RA + L+ GV +++ ++ G+ Sbjct: 264 RVALVGHTDSV---GALEPNIDLSRARATAVMTRLIDKYGVRPEQLEARGVGYLAPIASN 320 Query: 323 ASDPMNSANRRIDILVEDRQ 342 +D ANRR++ ++ + + Sbjct: 321 RTDTGRDANRRVEAVLLNTE 340 >gi|163803132|ref|ZP_02197015.1| putative outer membrane protein OmpA [Vibrio sp. AND4] gi|159173032|gb|EDP57865.1| putative outer membrane protein OmpA [Vibrio sp. AND4] Length = 320 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 14/135 (10%) Query: 212 VKGVLFETTRTGILISIIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-V 265 + V+ E T +I+DQ T F S+ + E++ + Sbjct: 180 SEPVVQEVVETRPATNIVDQEYPAQTTTVQFGLESAKLQDAS--AFNGTVELMNTYPQAQ 237 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I G++D + A N +L+ RA + + G++ DR++ + G +++ Sbjct: 238 VEINGYSDTT---GAAAYNQQLTEKRAQAVAEHFQAEGIAADRMT-VKGMGEANPVASNE 293 Query: 326 P--MNSANRRIDILV 338 NRR++++V Sbjct: 294 TRKGREQNRRVEVVV 308 >gi|153831721|ref|ZP_01984388.1| outer membrane protein OmpA [Vibrio harveyi HY01] gi|148872231|gb|EDL71048.1| outer membrane protein OmpA [Vibrio harveyi HY01] Length = 321 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ + E++ + + I G++D + N +L+ RA + Sbjct: 211 FGLESAELQDAS--AFNGTVELMNTYPQAQVEINGYSDTT---GSEAYNQQLTEKRAQAV 265 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 + G++ DR++ + G +++ NRR++++V Sbjct: 266 AEHFQAEGIAADRMT-VKGMGEANPVASNETREGREENRRVEVVV 309 >gi|291334148|gb|ADD93818.1| outer membrane protein [uncultured marine bacterium MedDCM-OCT-S05-C362] Length = 269 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 11/138 (7%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL-QKIGEVLAHST 263 + D I + V T +++ +D SS PE L ++G + H Sbjct: 137 EMAMDRIQEKVGLTITDEA----EAERKIVIYYDHDSSDISPEDQAYLSAEVGRIPMHDK 192 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 +++ GH D + R N LS++RA ++ L + G+ DR +S I Sbjct: 193 VSLTVVGHADRT---GTERYNHDLSVERAIGVHRALSQYGI-GDRSIGVSAKGETVPAIP 248 Query: 324 SDPM--NSANRRIDILVE 339 + NRR ++L++ Sbjct: 249 TSDGQSEPRNRRSEVLIK 266 >gi|206577508|ref|YP_002239403.1| outer membrane protein A [Klebsiella pneumoniae 342] gi|288936252|ref|YP_003440311.1| OmpA domain protein transmembrane region-containing protein [Klebsiella variicola At-22] gi|290510692|ref|ZP_06550062.1| OOP family OmpA-OmpF porin [Klebsiella sp. 1_1_55] gi|206566566|gb|ACI08342.1| outer membrane protein A [Klebsiella pneumoniae 342] gi|288890961|gb|ADC59279.1| OmpA domain protein transmembrane region-containing protein [Klebsiella variicola At-22] gi|289777408|gb|EFD85406.1| OOP family OmpA-OmpF porin [Klebsiella sp. 1_1_55] Length = 350 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G TD + A N +LS Sbjct: 222 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVMGFTD--RIGSEAY-NQQLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 279 EKRAQSVVDYLVAKGIPAGKISA-RGMGKSNPVTGNTCDNVKARAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|162456085|ref|YP_001618452.1| OmpA domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161166667|emb|CAN97972.1| OmpA domain protein [Sorangium cellulosum 'So ce 56'] Length = 210 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 13/130 (10%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTD 273 T I+I F+ + E+ +L ++ + T I+I GH Sbjct: 79 RVVVTDDKIII-----NEKIQFEYDQATIRTESHSLLDEVVGTIKKHTHIKKIAIEGHAS 133 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSAN 331 A N +LS RA + + L+ G++ + GF + +D N Sbjct: 134 AE---GSEDHNLKLSDRRAKAVMKYLVDHGIAAG-MLTAKGFGKSKPIADNDTPEGREKN 189 Query: 332 RRIDILVEDR 341 RR++ + ++ Sbjct: 190 RRVEFNIVEQ 199 >gi|330975634|gb|EGH75700.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 250 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 6/116 (5%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISI 268 + E R G I +I F SS L + L + I I Sbjct: 95 ESMANTGVEVQRQGDQIKLI-MPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEI 153 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 G+TD++ + N LS RA S L GV + + + G + ++ Sbjct: 154 VGYTDST---GSRQHNMDLSQQRAQSVATYLTSQGVDQAHL-SVRGAGPDQPIASN 205 >gi|308448669|ref|XP_003087717.1| hypothetical protein CRE_26028 [Caenorhabditis remanei] gi|308253504|gb|EFO97456.1| hypothetical protein CRE_26028 [Caenorhabditis remanei] Length = 189 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS + LQ + L + +++ GHTD R N L RA + Sbjct: 81 FDYDSSDLSNDDYQTLQAHAQFLIANANSKVALTGHTDE---RGTREYNMALGERRAKAV 137 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV +++ +S + + NRR++I Sbjct: 138 ESYLITNGVKANQLEAVS-YGKEMPINTGHDEAAWKENRRVEI 179 >gi|153836574|ref|ZP_01989241.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] gi|149750172|gb|EDM60917.1| outer membrane protein [Vibrio parahaemolyticus AQ3810] Length = 284 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 23/211 (10%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMK----RKKRLQDLAKK 198 K L ++G C + +++ K+ + A +++RL L ++ Sbjct: 53 TKLHLDALIQEGARWCFPAAVVQALEKQNRIARELEGGLLLDAANDLVIQRRRLNQLEQQ 112 Query: 199 ISSTLSGLV------ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + L+ D + + +L +D + F S+ P+ + L Sbjct: 113 LDYVLTQTACTPPDDIDALRNDLNIVADIYALL--NVDNQ----FAIDSAEINPKYMGHL 166 Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + +L + + GH D N +L+ +RA + L GV+ DR+ + Sbjct: 167 AEAAYILRDHPALSLVVTGHAD---VTGTPEHNKKLAQERAEQVKRYLSVFGVTSDRV-Q 222 Query: 312 ISGFAHHRLKIASDPMNSA--NRRIDILVED 340 NRR+ I V Sbjct: 223 TKSVGDTLPLYEGQTPAVRLTNRRVSIEVLS 253 >gi|294672796|ref|YP_003573412.1| OmpA family protein [Prevotella ruminicola 23] gi|294473078|gb|ADE82467.1| OmpA family protein [Prevotella ruminicola 23] Length = 384 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F ++ + ++ E L + E ++I G+ DA + D RL+ RA Sbjct: 286 FFAIGKTVIRKSEQQKVNEVVEYLNANPEAKVNITGYADAGTGNDRIND--RLAAGRADV 343 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + L K+GV+ RIS S A + +D R+ I++ Sbjct: 344 VVKALKKAGVAASRISYDSKGARVQPFADNDS-----NRVSIVI 382 >gi|262375579|ref|ZP_06068812.1| peptidoglycan-associated lipoprotein [Acinetobacter lwoffii SH145] gi|262309833|gb|EEY90963.1| peptidoglycan-associated lipoprotein [Acinetobacter lwoffii SH145] Length = 190 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ E + LQ + L + +++ GHTD R N L RA + Sbjct: 82 FDYDSTELSNEDLNTLQAHAQFLMANANSRVALTGHTDE---RGTREYNMALGERRAKAV 138 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 L+ +GV+ ++ +S + A N+ NRR++I Sbjct: 139 ESFLVTTGVNPGQLEAVS-YGKEMPINAGHDENAWKENRRVEI 180 >gi|262166026|ref|ZP_06033763.1| outer membrane protein [Vibrio mimicus VM223] gi|262025742|gb|EEY44410.1| outer membrane protein [Vibrio mimicus VM223] Length = 278 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 24/198 (12%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 LEK L + ++KRL L +++ S F + Sbjct: 83 QALEKQNRIARQLDGGLLLDAANDLLIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142 Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDA 274 +S+I++ N + F +S+ P+ + L + L +S+ GH D+ Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKDRQDLTLSVTGHADS 197 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 + N +L++ RA + L G++ +RI+ S + NR Sbjct: 198 ---SGNSEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253 Query: 333 RIDILV-------EDRQG 343 R+ I + +QG Sbjct: 254 RVSIEIITADSPTLSKQG 271 >gi|227538215|ref|ZP_03968264.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241924|gb|EEI91939.1| OmpA family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 650 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277 + GI+ + + +D + S P+ VL ++ + + I + HTD+ Sbjct: 528 VNKEGIVFVL----DNIYYDFNKSDIRPDAAKVLDQLVNTMTENPTLQIELSSHTDS--- 580 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSA 330 R N +LS RA SA + ++ G++++R+ G+ +L ++ + A Sbjct: 581 RGSDSYNMKLSDRRAKSAVEYIISKGIAKERLVS-KGYGESKLVNECANGVKCTEEQHQA 639 Query: 331 NRRIDILVE 339 NRR ++ V Sbjct: 640 NRRTEVKVL 648 >gi|91792756|ref|YP_562407.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91714758|gb|ABE54684.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 289 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + + L+K+ E L++ EV + I G TD+ ++I N +S +RA S Sbjct: 184 YEEGDTELTHFSKYQLKKVQEYLSYDPEVELVLIDGFTDSYGPKSI---NQTVSNNRADS 240 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 Q+L+ SG+ +D+I +G R +++ NRR+ I Sbjct: 241 IKQLLIASGIPKDKIIS-NGHGEKRHVASNELVQERERNRRVVI 283 >gi|283798975|ref|ZP_06348128.1| outer membrane protein [Clostridium sp. M62/1] gi|291073265|gb|EFE10629.1| outer membrane protein [Clostridium sp. M62/1] Length = 294 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + +L + E+L + + + GHTD N +LS RA + Sbjct: 225 FDFDKATLRPDAVAILNEAAEILKRNPSLRVEVAGHTD---LCGKDAYNQKLSERRAKAV 281 Query: 296 YQVLMKSGVSEDR 308 Y L +GV R Sbjct: 282 YDFLTSNGVDAGR 294 >gi|149908775|ref|ZP_01897435.1| hypothetical protein PE36_21279 [Moritella sp. PE36] gi|149808049|gb|EDM67990.1| hypothetical protein PE36_21279 [Moritella sp. PE36] Length = 284 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 13/119 (10%) Query: 232 RNTPMFDKSSSIP-----LPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 R+ ++ S E +++ I L + I GH+++ +N Sbjct: 171 RDRNLYYSGGSYLLNTQQKQEMAAIVKYIS--LDGLVTKVLIDGHSNSI---GNTVNNLL 225 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDRQG 343 LS RA Y LM++G+S ++ ++ + + NRR+++ + R G Sbjct: 226 LSQQRADDVYMYLMEAGIS-TKLMEVRSHGDRYPLKSDRTASGREKNRRVNLRIIRRLG 283 >gi|146343730|ref|YP_001208778.1| hypothetical protein BRADO6977 [Bradyrhizobium sp. ORS278] gi|146196536|emb|CAL80563.1| conserved hypothetical protein; putative OmpA-like transmembrane domains [Bradyrhizobium sp. ORS278] Length = 213 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 18/199 (9%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + D + + + +K + + + + ++ K LQ + + + + Sbjct: 19 TQAVAAEDVTEDQIVRALAGPKKPLTRGLSMAPQAEAAPAAANPEQDKFLQSIRGRATRS 78 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 LS + I T+ I + I FD +S+ +++ +Q +G L Sbjct: 79 LSSAEREEIA---AVAKTKPNIDLEIT-------FDYNSANISQKSMASVQALGRALTSP 128 Query: 263 TEV---ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 + GHTDA N LS RA S + L++ G++ + + G+ Sbjct: 129 DLKGSTFVLAGHTDA---AGADAYNQDLSERRADSIKRYLVEKFGIAGSDLVTV-GYGKS 184 Query: 319 RLKIASDPMNSANRRIDIL 337 +LK S P+ NRR+ ++ Sbjct: 185 KLKDPSQPLAEVNRRVQVV 203 >gi|82523863|emb|CAI78811.1| outer membrane protein and related peptidoglycan-associated [uncultured candidate division WS3 bacterium] Length = 192 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + +L + + + I I GH D+ R N L RA +A Sbjct: 91 FEFDKYTLTADARRMLAQTAKAMKEMPEVRIQIEGHCDS---RGTQEYNLALGQRRAQAA 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 L+ G+ R+S IS F R ++ + NRR Sbjct: 148 KDYLVNLGIDAARVSIIS-FGEERPLDPRENEEAWAKNRR 186 >gi|167570798|ref|ZP_02363672.1| ompA family protein [Burkholderia oklahomensis C6786] Length = 224 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 101 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214 >gi|300787647|ref|YP_003767938.1| OmpA-OmpF porin, OOP family [Amycolatopsis mediterranei U32] gi|299797161|gb|ADJ47536.1| OmpA-OmpF porin, OOP family [Amycolatopsis mediterranei U32] Length = 410 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 82/267 (30%), Gaps = 20/267 (7%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 + K+ I SV + + ++ Sbjct: 147 DALQKVSRQIGTEHGPVSVVAVSNGLDNTAPLDLRVPLAGDATPESVAKMLAGDAEIPGL 206 Query: 153 KGKD-----LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK-RLQDLAKKISSTLSGL 206 +G D L +++ + + + E ++ + E + A K RL+ + I Sbjct: 207 QGVDVQILELGQTSQGRRQMTEGEQRWIVSVWGEILKAAGVAKPRLERKSGDILDGAPAN 266 Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 V + V + + + +FD +S + P VL+ +L Sbjct: 267 VPADAVFAAAPPQPKPPVGTGSVSLSAQALFDPNSPVLAPAAEAVLRPYVTILQGPGAHA 326 Query: 267 SIRGHTDA-SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS- 324 +I GHT P LS+ RA + ++ V + ++ G + Sbjct: 327 TITGHTATWGPIPGRDL----LSVQRAEAVRNYFIEQHVPAEALAPARGVGSSEQVVNDI 382 Query: 325 DP-------MNSANRRIDI-LVEDRQG 343 DP NRRI + +V +G Sbjct: 383 DPAGNLIEQAAQRNRRIVLDIVTPTKG 409 >gi|294139328|ref|YP_003555306.1| OmpA family protein [Shewanella violacea DSS12] gi|293325797|dbj|BAJ00528.1| OmpA family protein [Shewanella violacea DSS12] Length = 277 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S L E V++ + L + + GHTD N LS RA + Sbjct: 170 LFKFDSDEMLLEATPVVEVVATYLKSHPKQSFYVIGHTDDL---GKQSYNQVLSNKRAKA 226 Query: 295 AY-QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVED 340 Q+L V + ++ G + ++D NRR+++++ Sbjct: 227 VVKQLLSVYKVPKSQLEA-KGIGEYSPVANNSNDAGQKLNRRVELVLRS 274 >gi|196233271|ref|ZP_03132117.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] gi|196222742|gb|EDY17266.1| OmpA/MotB domain protein [Chthoniobacter flavus Ellin428] Length = 564 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 4/100 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S + ++ + L ++ I I G TD R N L RA + Sbjct: 463 FGFDSYAIGGGERSKIDEVAQFLKSASNTIIIAGFTDE---RGTPEYNRGLGERRAQAVR 519 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRID 335 + L++ G +I +S A S+ + NRR + Sbjct: 520 EALIRDGADGSKIQTVSFGAEMPADQGSNESAWAKNRRAE 559 >gi|50085748|ref|YP_047258.1| putative outer membrane lipoprotein [Acinetobacter sp. ADP1] gi|49531724|emb|CAG69436.1| putative outer membrane lipoprotein [Acinetobacter sp. ADP1] Length = 254 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+I +L ++ L + + I GHTD+ A N LS +RA + Sbjct: 153 FESGSAILTASGQQILDEMAAALKKVGGKKVKIIGHTDS---SGDASKNLVLSQERAVAV 209 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L+ +S D + G ++ + NRRI+ V Sbjct: 210 KNYLITKNISSDNL-STEGVGSNKPVADNTTAEGRRKNRRIEFEVL 254 >gi|320179525|gb|EFW54477.1| Outer membrane protein A precursor [Shigella boydii ATCC 9905] Length = 342 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 214 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 270 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 271 ERRAQSVVDYLISKGIPADKISA-RGIGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 329 Query: 338 VE 339 V+ Sbjct: 330 VK 331 >gi|330830247|ref|YP_004393199.1| sodium-type flagellar protein MotY [Aeromonas veronii B565] gi|328805383|gb|AEB50582.1| Sodium-type flagellar protein MotY [Aeromonas veronii B565] Length = 277 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +DK+S + L I E + V+ I ++D+ N +LS RA + Sbjct: 170 YDKNSDQLSIPSKRRLAMISEFIKADKGIDVVVIDAYSDSY---GGRWPNLKLSEKRADA 226 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 +V + G+ +I + G + +++ + NRR+ I Sbjct: 227 IKKVFVDLGIDPGKI-SVEGHGEKQHVASNETEQGRAKNRRVVI 269 >gi|167841641|ref|ZP_02468325.1| ompA family protein [Burkholderia thailandensis MSMB43] Length = 224 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 101 LFDFDKAILKPAGKQKLDELASKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214 >gi|332668116|ref|YP_004450904.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336930|gb|AEE54031.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 662 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 11/104 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +D + L K+ E L + I + HTD R N LS RA SA Sbjct: 556 YDLDKWDIRADAQPTLDKLAETLKLNPKVRIQLSSHTDC---RGTDVYNESLSQKRAQSA 612 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRR 333 L+ G+ R+ G+ + S+ + NRR Sbjct: 613 VDYLISKGIEAQRLEA-RGYGEGVPEATCACARCSEDEHQLNRR 655 >gi|332092496|gb|EGI97569.1| outer membrane protein A [Shigella boydii 5216-82] gi|332095872|gb|EGJ00879.1| outer membrane protein A [Shigella dysenteriae 155-74] Length = 351 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 223 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ D+IS G + N RR++I Sbjct: 280 ERRAQSVVDYLISKGIPADKISA-RGIGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 338 Query: 338 VE 339 V+ Sbjct: 339 VK 340 >gi|315634557|ref|ZP_07889842.1| outer membrane protein P5 [Aggregatibacter segnis ATCC 33393] gi|315476784|gb|EFU67531.1| outer membrane protein P5 [Aggregatibacter segnis ATCC 33393] Length = 354 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ VL I +A + + + G+TD + A N +LS RA + Sbjct: 241 FAFGKADLKPQAQGVLDGIYGEIAQVKSANVKVAGYTD--RIGSDAY-NQKLSQKRAETV 297 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 L+ GVS++ IS +G+ + D + +RR++I V Sbjct: 298 ANYLVAKGVSQNAISA-TGYGKANPVTGNKCDAVKGRKALIACLADDRRVEIAV 350 >gi|291616946|ref|YP_003519688.1| OmpA [Pantoea ananatis LMG 20103] gi|291151976|gb|ADD76560.1| OmpA [Pantoea ananatis LMG 20103] Length = 367 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 20/120 (16%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G TD + N +LS Sbjct: 239 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 295 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------------DPMNSANRRIDI 336 RA S L+ G+ ++IS G + D + RR++I Sbjct: 296 EKRAQSVVDYLVSKGIPANKISA-RGMGESNPVTGNTCDSVKGRKALIDCLAPD-RRVEI 353 >gi|212637766|ref|YP_002314291.1| OmpA protein [Shewanella piezotolerans WP3] gi|212559250|gb|ACJ31704.1| OmpA [Shewanella piezotolerans WP3] Length = 301 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD SSS L + + + + I GH DAS R N LS +RA Sbjct: 182 LFDTSSSHLNTVHSKDLVAVSRYIEADSTIAEVLIDGHADASGNRIA---NLVLSKERAD 238 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 +L++ GV R+ ++ A++ NRR+ I Sbjct: 239 EVASMLIELGVPA-RMIQVRHHGTRAPIAANNNQQGRELNRRVSI 282 >gi|327393374|dbj|BAK10796.1| outer membrane protein A precursor OmpA [Pantoea ananatis AJ13355] Length = 363 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 20/120 (16%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G TD + N +LS Sbjct: 235 KSDVLFTFNKSTLKPEGQQALDQLYSQLSSMDPKDGSVVVLGFTD--RIGSEQY-NQKLS 291 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------------DPMNSANRRIDI 336 RA S L+ G+ ++IS G + D + RR++I Sbjct: 292 EKRAQSVVDYLVSKGIPANKISA-RGMGESNPVTGNTCDSVKGRKALIDCLAPD-RRVEI 349 >gi|294013407|ref|YP_003546867.1| peptidoglycan-associated lipoprotein [Sphingobium japonicum UT26S] gi|292676737|dbj|BAI98255.1| peptidoglycan-associated lipoprotein [Sphingobium japonicum UT26S] Length = 170 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + +FD + +LQ L + ++I GH D R N L Sbjct: 61 SSDRILFDTDQYDVDAQDQQILQSQAAWLQQNPNVRVTIEGHADE---RGTRDYNIALGE 117 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339 RA +A L G+ RI+ +S + SD + NRR + + V+ Sbjct: 118 RRANAAKNYLASLGIDAGRITTVSYGKERPAALGSDEAAWAQNRRAVTVTVQ 169 >gi|90414986|ref|ZP_01222948.1| hypothetical protein P3TCK_23895 [Photobacterium profundum 3TCK] gi|90323925|gb|EAS40525.1| hypothetical protein P3TCK_23895 [Photobacterium profundum 3TCK] Length = 260 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + LP+ L+ +L + + + GHTD+ + N +L + RA + Sbjct: 135 FALNRAELLPDYQQALRYAATILKRQSHWHLQLTGHTDSL---GTSDSNIQLGMKRASAV 191 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 + L++ GV ++I + + ANR+++ Sbjct: 192 KRFLIEQGVKSNQI-AVFSAGESMAMDDTHSRTQRLANRKVE 232 >gi|53719284|ref|YP_108270.1| hypothetical protein BPSL1659 [Burkholderia pseudomallei K96243] gi|52209698|emb|CAH35657.1| putative exported protein [Burkholderia pseudomallei K96243] Length = 299 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++ + + + G+TD N RLS +RA + Sbjct: 192 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 246 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 247 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 299 >gi|332877818|ref|ZP_08445556.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684113|gb|EGJ56972.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 680 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + + S+ + + L + ++ + + I + H D +R N RLS R Sbjct: 519 DNVFYAFDSAELTDSSTLALDSLVTLMEDNPNITIELSSHCD---YRGRDEYNIRLSQRR 575 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 A S + L+ GV+ DR++ I G+ R K+ Sbjct: 576 AESVVKYLIAHGVATDRLTPI-GYGETRPKV 605 >gi|330998288|ref|ZP_08322113.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] gi|329568677|gb|EGG50478.1| OmpA family protein [Paraprevotella xylaniphila YIT 11841] Length = 673 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + + S+ + + L + ++ + + I + H D +R N RLS R Sbjct: 519 DNVFYAFDSAELTDSSTLALDSLVTLMEDNPNITIELSSHCD---YRGRDEYNIRLSQRR 575 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 A S + L+ GV+ DR++ I G+ R K+ Sbjct: 576 AESVVKYLIAHGVATDRLTPI-GYGETRPKV 605 >gi|260769131|ref|ZP_05878064.1| outer membrane protein [Vibrio furnissii CIP 102972] gi|260614469|gb|EEX39655.1| outer membrane protein [Vibrio furnissii CIP 102972] Length = 208 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS P + ++++ + L E I ++G+ A N LS R+ + Sbjct: 88 LFANNSSTIPPVFMNQIRQMADFLKLYPEASIELQGYASKV---GKADHNLALSKQRSEA 144 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 L++ GV+ RI +I G+ L + + ++ NRR+ V +G Sbjct: 145 VRLQLLRFGVTPKRI-RIVGYGDTVLAVNGEDQVSHAQNRRVTASVVGFKG 194 >gi|153835168|ref|ZP_01987835.1| outer membrane protein [Vibrio harveyi HY01] gi|148868362|gb|EDL67484.1| outer membrane protein [Vibrio harveyi HY01] Length = 330 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ E+ L +I ++L + I G TD R ++ N +L+ RA S Sbjct: 222 FGFDSTKVSQESEQKLLEIQKLLVSYPQSQVEIVGFTDD---RGASQYNEKLAKRRAQSI 278 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 + L GV D+IS S G S+ NRR+++ + Sbjct: 279 AKYLESKGVKADQISLTSKGELDPVASNHSEDGRVKNRRVEVSI 322 >gi|320329251|gb|EFW85248.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880852|gb|EGH15001.1| ompA family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 9/207 (4%) Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGK 155 + + + S D + + ++ I + ++E + L ++ Sbjct: 22 GAGHQDSGQALQQASADFQKVKEDTDVLRSAPKDVIRAGESLARAERLSSYLGSGADVAH 81 Query: 156 DLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ-DLAKKISSTLSGLVADNIVKG 214 S+ + + N L K+ +++ +L AK S+ G ++ + Sbjct: 82 YAYLSSRYSEIAREHSNLMLSQERLAKMDMERQRLQLALREAKLASAQQQGRWLEDQILS 141 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTD 273 + T G+++++ D +FD + + K+ + L + + I G+TD Sbjct: 142 LATTETDRGLVMTLGD----VLFDAGHAELKSSASRTILKVVQFLQINPRRVVRIEGYTD 197 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLM 300 ++ ++N +LS DRA + VLM Sbjct: 198 ST---GDRQENLKLSKDRAQAVADVLM 221 >gi|327485675|gb|AEA80081.1| Protein F-like protein [Vibrio cholerae LMA3894-4] Length = 182 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + L + LA + I + GHTD + + N +L+ RA + Sbjct: 77 FETGSAKVSMASKQWLDTVARFLATESGIDIVLEGHTDNT---GSEKLNDKLAERRANAV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++S V ++ I GF + + N NRR++I Sbjct: 134 KAALVQSRVVQNAIY-TRGFGENVPACTNSTKNGRACNRRVEI 175 >gi|317480796|ref|ZP_07939881.1| OmpA family protein [Bacteroides sp. 4_1_36] gi|316903039|gb|EFV24908.1| OmpA family protein [Bacteroides sp. 4_1_36] Length = 416 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 D F+ + + +L ++ +L + + I G+TDA R A+ N RLS Sbjct: 294 DLLENIHFEFDKDVITLVSHKILDRLAALLKNYPDSHFLITGYTDA---RGSAQYNLRLS 350 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 RA + Y+ L++ GV + K GF + + P+ + N R Sbjct: 351 ERRAKAVYKALLERGV-PSHMLKWRGFGNRAALVP--PVAADNIR 392 >gi|315127225|ref|YP_004069228.1| component of sodium-driven polar flagellar motor [Pseudoalteromonas sp. SM9913] gi|315015739|gb|ADT69077.1| component of sodium-driven polar flagellar motor [Pseudoalteromonas sp. SM9913] Length = 292 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 9/114 (7%) Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWR 286 D T M ++ +SS + L KI E L + E ISI +TD+ +N Sbjct: 180 DISFTIMNYESNSSKLTKSSQQRLDKIAEYLKNDPSIESISIASYTDSY---GGRWNNLD 236 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 LS RA ++ GV E ++ GF R +D NRR+ I + Sbjct: 237 LSRKRAKEIKDYMVGLGVDEAKVV-TEGFGEKRFVDTNDNILGRDKNRRLVIQI 289 >gi|298370128|ref|ZP_06981444.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281588|gb|EFI23077.1| OmpA family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 298 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 22/170 (12%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-TPMFDKS 240 + ++ ++ + K+ + TLS +V+ + VL + + D+ M ++ Sbjct: 134 QSVSPEQAEAEMKGVKRQNHTLSRVVSKDKCAQVLKKYNLQASALFKFDRSGYQDMLEQG 193 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + + Q V + +++ GHTD P ++ LS+ RA + Q L Sbjct: 194 KREVSTISQDIKQNPAAVTS-----VNVVGHTD--PEGKPEYND-ALSVKRAQTVKQALS 245 Query: 301 KSGVSEDRISKISGFAHHRLKIASD----PMNSA--------NRRIDILV 338 SG+ + I G L + + P N+ NRR++I++ Sbjct: 246 SSGLDGN-IISTQGKGERELVVTNCRKRFPKNAKAREKCDQPNRRVEIIL 294 >gi|156975261|ref|YP_001446168.1| hypothetical protein VIBHAR_02990 [Vibrio harveyi ATCC BAA-1116] gi|156526855|gb|ABU71941.1| hypothetical protein VIBHAR_02990 [Vibrio harveyi ATCC BAA-1116] Length = 293 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 187 YERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVATYTDSTDGKSTSQS---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+S +RI ++ G+ R + NRR+ I + Q Sbjct: 244 LRSYFESLGLSGERI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292 >gi|299134179|ref|ZP_07027372.1| peptidoglycan-associated lipoprotein [Afipia sp. 1NLS2] gi|298590926|gb|EFI51128.1| peptidoglycan-associated lipoprotein [Afipia sp. 1NLS2] Length = 162 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD + + I L+K + L +I GH D R N L R Sbjct: 54 DRVFFDSDQTELSQQAINTLEKQAQWLQQYPRYTFTIEGHADE---RGTREYNIALGAKR 110 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L+ G+S R+ IS + R + ++ S NRR Sbjct: 111 AQSVRNFLVSRGISASRMRTIS-YGKERPVAVCNDISCWSQNRR 153 >gi|89890645|ref|ZP_01202155.1| outer membrane protein [Flavobacteria bacterium BBFL7] gi|89517560|gb|EAS20217.1| outer membrane protein [Flavobacteria bacterium BBFL7] Length = 659 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 18/131 (13%) Query: 226 ISIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFR 278 I + D N + FD + + LQK+ + I IR HTD+ Sbjct: 533 IKVGDDLNDILDLNMIYFDFDKHNIRYDAEIELQKVLAFMEAYPNSIIDIRSHTDSR--A 590 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSAN 331 + N +LS RA S L+ G+ +R++ G+ ++L ++ + N Sbjct: 591 SDGY-NIKLSDRRAKSTRAYLIMKGIKANRLTA-RGYGEYQLVNECSNGVECTEEQHQLN 648 Query: 332 RRIDILVEDRQ 342 RR + ++ + Sbjct: 649 RRSEFIIMKLK 659 >gi|330892247|gb|EGH24908.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. mori str. 301020] Length = 150 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 51 FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 107 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 108 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 148 >gi|312115989|ref|YP_004013585.1| peptidoglycan-associated lipoprotein [Rhodomicrobium vannielii ATCC 17100] gi|311221118|gb|ADP72486.1| peptidoglycan-associated lipoprotein [Rhodomicrobium vannielii ATCC 17100] Length = 169 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 S+ P+ +L L T I+I GH D R N L RA + Sbjct: 62 TDSAELSPDGQQILNAQAVWLRQYTNFPITIEGHADE---RGTREYNIALGAKRAETTKN 118 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 L+ G+S RI IS + R D ++ S NRR + V + G Sbjct: 119 FLIAQGISPQRIRTIS-YGKERPVAVCDDISCWSQNRR-TVTVLEGGG 164 >gi|251792474|ref|YP_003007200.1| Plp4 [Aggregatibacter aphrophilus NJ8700] gi|247533867|gb|ACS97113.1| Plp4 [Aggregatibacter aphrophilus NJ8700] Length = 278 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 12/109 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + V+ K+ L S + + + G+TD N LS RA Sbjct: 144 LFDFDKDTLTEKGKEVVDKVAAQLKESKAQEVKVAGYTDRL---GSESYNMDLSQRRANR 200 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMN------SANRRIDI 336 L + GV +IS + G AH +++ N NRR++I Sbjct: 201 VKARLTEQGVDA-QISAVGHGEAHQVKACSNEKGNKLISCLRPNRRVEI 248 >gi|163794640|ref|ZP_02188610.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159179913|gb|EDP64438.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 215 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGH----TDASPFRNIARDNWRLSLDRA 292 F SS+ L K+ + S + + GH T R N+ +SL RA Sbjct: 107 FGHSSARLTGTERAELAKVAQTAIASGAAVRVIGHASARTADLDLRAHEVANFTMSLKRA 166 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 + VL+ +G+ +RI +I + + + NRR+++ + Sbjct: 167 NAVADVLIHAGLPANRI-RIDALGDSQPEFYEVMPSGEAGNRRVEVFL 213 >gi|167738461|ref|ZP_02411235.1| hypothetical protein Bpse14_10350 [Burkholderia pseudomallei 14] gi|167815654|ref|ZP_02447334.1| hypothetical protein Bpse9_10954 [Burkholderia pseudomallei 91] gi|254188891|ref|ZP_04895402.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|157936570|gb|EDO92240.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] Length = 277 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++ + + + G+TD N RLS +RA + Sbjct: 170 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 224 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 225 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 277 >gi|88859106|ref|ZP_01133747.1| putative assembly or transport protein for curli synthesis [Pseudoalteromonas tunicata D2] gi|88819332|gb|EAR29146.1| putative assembly or transport protein for curli synthesis [Pseudoalteromonas tunicata D2] Length = 417 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 14/166 (8%) Query: 188 RKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT------PMFDKSS 241 K++ + ++ S + L+ N K V+ T+ + +NT F S Sbjct: 256 TKEQNEKFLEQARSKNAALMRKNQTKTVIATPTKEATTEQLALSKNTNALSFAVQFRTGS 315 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + P L I ++ + I ++G D R + ++N LSL R++S Q L Sbjct: 316 AQLEPVYSEQLNSIVSLVKSTDYLAIELQGFADQ---RGLEQENRSLSLARSHSVAQYLN 372 Query: 301 KSGVSEDRISKISGFAHHRLKIA-SDPMNS-ANRRIDI-LVEDRQG 343 G+ + RI ++G + +DP +RR+ + L++ R G Sbjct: 373 NQGIVQQRI-SVAGLGDEQAVYQVTDPEGLFFDRRVIVKLIDTRSG 417 >gi|222081460|ref|YP_002540823.1| hypothetical protein Arad_7805 [Agrobacterium radiobacter K84] gi|221726139|gb|ACM29228.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 199 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE----VISIRGHTDASPFRNIARDNWRLSLDRA 292 F S P + L I + L H I GH A+ + N+ LS RA Sbjct: 90 FQNDSVAIEPRSYRTLGLIADAL-HHPNLWAYKFLIVGHASAT---GGDKHNFELSSKRA 145 Query: 293 YSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + + L + V +R+ + G + A+ + NRR+ Sbjct: 146 DAIKEALATTFAVDSERLYAV-GVGEYFPIDAAKADAADNRRV 187 >gi|170717767|ref|YP_001784833.1| OmpA domain-containing protein [Haemophilus somnus 2336] gi|168825896|gb|ACA31267.1| OmpA domain protein transmembrane region-containing protein [Haemophilus somnus 2336] Length = 342 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE L + +A T +S+ G+TD N +LS RA + Sbjct: 229 FAFAKDTLKPEAQQTLDGVYGEIAQLKTAQVSVAGYTDRI---GSDASNLKLSQRRADTV 285 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----------ASDPMNSANRRIDILVEDRQ 342 L+ GV++D IS + G+ A + +RR++I V+ + Sbjct: 286 ANYLVSKGVAQDAISAV-GYGEANPVTGMKCDSVKGRKALIACLAEDRRVEISVKGSK 342 >gi|148554155|ref|YP_001261737.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148499345|gb|ABQ67599.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 196 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + ++ PE+ L + + ++ + + G+TD A N RLS RA Sbjct: 95 FLEGTTELTPESQPGLAFLIKEVSERPGAEVQVTGYTDTL---GEADANDRLSQQRAEEV 151 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 VL K G+ +S + G L++A+ ANRR+ + + Sbjct: 152 LGVLAKQGIDPTLMSAV-GRGERNLRVATPDGVSEPANRRVVVTI 195 >gi|52840894|ref|YP_094693.1| outer membrane protein, OmpA family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628005|gb|AAU26746.1| outer membrane protein, OmpA family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 249 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L I + ++ K + II MF SS L Sbjct: 93 LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 150 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + +L I + G TD R+ R +LS +A + L +G++ R+ Sbjct: 151 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 206 Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336 G+ + I+ + ++ NRRI+I Sbjct: 207 GYGD-KNAISDNAIIHGSAQNRRIEI 231 >gi|54293640|ref|YP_126055.1| hypothetical protein lpl0693 [Legionella pneumophila str. Lens] gi|54296680|ref|YP_123049.1| hypothetical protein lpp0711 [Legionella pneumophila str. Paris] gi|296106245|ref|YP_003617945.1| hypothetical protein lpa_01027 [Legionella pneumophila 2300/99 Alcoy] gi|53750465|emb|CAH11859.1| hypothetical protein lpp0711 [Legionella pneumophila str. Paris] gi|53753472|emb|CAH14927.1| hypothetical protein lpl0693 [Legionella pneumophila str. Lens] gi|295648146|gb|ADG23993.1| hypothetical protein lpa_01027 [Legionella pneumophila 2300/99 Alcoy] Length = 230 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L I + ++ K + II MF SS L Sbjct: 74 LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 131 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + +L I + G TD R+ R +LS +A + L +G++ R+ Sbjct: 132 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 187 Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336 G+ + I+ + ++ NRRI+I Sbjct: 188 GYGD-KNAISDNAIIHGSAQNRRIEI 212 >gi|45656096|ref|YP_000182.1| peptidoglycan associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|30984127|dbj|BAC76763.1| OmpA family outer membrane lipoprotein [Leptospira interrogans serovar manilae] gi|45599329|gb|AAS68819.1| peptidoglycan associated cytoplasmic membrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 195 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 27/181 (14%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 S K+E P S ++ A + + +AD++ + + G+ Sbjct: 22 SSAEKKEESAAPEPSTQEQSAAANRN--------VDVNSPEAIADSLNEKLKDFRYPDGL 73 Query: 225 LISIIDQRNTPMFDKSSSIPLP-ETIVVLQKIGEVLAHSTEVI------SIRGHTDAS-- 275 P F + P + + V+ + I GHTDA Sbjct: 74 T--------RPGFSYKKADVTPGDFSEWSKTNAPVIKEGLGKLPDSYALEITGHTDAIGP 125 Query: 276 -PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N S RA + Q L+K G+ +RI G D ++ NRR+ Sbjct: 126 EQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIV-TKGAGSSEPVSGLDAKDAKNRRV 184 Query: 335 D 335 Sbjct: 185 T 185 >gi|86131085|ref|ZP_01049684.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85818496|gb|EAQ39656.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 278 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 19/151 (12%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + I+ + K E G I + +F + S ++ L K+ Sbjct: 128 KEAIAEEKELEETKDRYKTFEDEPIVKGDRILL----KNILFKTNYSYIHGKSRKDLNKL 183 Query: 256 GEVLAHSTEVI-SIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + LA E+I I+GH D + R+ LS RA Y L GV++ Sbjct: 184 AKYLAAHPEIIFKIQGHVCCVDHGRDGINLKTGKRN---LSEARAKFIYDYLADHGVAKK 240 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILV 338 R+ + GF DP + R++ILV Sbjct: 241 RM-RYQGFGSRFPL-GGDPKDDK--RVEILV 267 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRL 287 +D+ + F+ S + L++ L E ISI G+ D A +NW L Sbjct: 7 VDKTHETFFETDKSNLVAIENAKLERFITSLPLDKIEDISIYGYCDDR--GTDAYNNW-L 63 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAH---HRL-KIASDPMNSANRRIDILV 338 S +RA + Q + G+++ I G RL + S+ + NR+++I+V Sbjct: 64 SQERANTIKQKFVDRGIADSIIKNSDGKGELLLTRLDDVGSEVQRTLNRKVEIIV 118 >gi|27377528|ref|NP_769057.1| hypothetical protein bll2417 [Bradyrhizobium japonicum USDA 110] gi|27350672|dbj|BAC47682.1| bll2417 [Bradyrhizobium japonicum USDA 110] Length = 213 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S+ ++ +Q +G+ L+ + GHTDA N LS RA Sbjct: 104 FDYNSADIAKTSVPSVQALGKALSDPALKGSTFVVAGHTDAI---GGEEYNQGLSERRAD 160 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 + + L+++ G++ + + G+ +LK ++ + NRR+ ++ D + Sbjct: 161 TIKKYLVQNYGLNGTDLVTV-GYGKTKLKDTANGADPINRRVQVVNMDTK 209 >gi|328953892|ref|YP_004371226.1| peptidoglycan-associated lipoprotein [Desulfobacca acetoxidans DSM 11109] gi|328454216|gb|AEB10045.1| peptidoglycan-associated lipoprotein [Desulfobacca acetoxidans DSM 11109] Length = 191 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 7/109 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWR 286 I + F+ E+ +LQK L E I+I GH D R + N Sbjct: 76 IAFESEDVFFEYDQFTLTSESRSLLQKKASFLQKHPEIQITIEGHCD---IRGSSDYNLG 132 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 L RA SA L G++ +R+S IS + + D + NRR Sbjct: 133 LGQKRADSAKSYLQDLGIAGNRLSTIS-YGKEQPVAHGDTEEAHARNRR 180 >gi|294676664|ref|YP_003577279.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294475484|gb|ADE84872.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 185 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ LQ+ + I GHTD+ R N RLS RA + Sbjct: 87 LFATDSTKLTASGRGYLQQFFTTAQARS--FIITGHTDS---RASDEYNMRLSKGRAEAV 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 V + G + ++ + K + + NRR++++ Sbjct: 142 AGVAQQVGAP---VLAVNWYGERMPKATNATAAGMAQNRRVEVI 182 >gi|212634139|ref|YP_002310664.1| OmpA protein [Shewanella piezotolerans WP3] gi|212555623|gb|ACJ28077.1| OmpA [Shewanella piezotolerans WP3] Length = 187 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ + S L VL++I L + + G+TD+ N RLSL RA S Sbjct: 85 FEFAKSEILSSQRAVLERISAWLTQVPARLLLVGYTDSI---GGEAFNHRLSLLRAKSVK 141 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 Q L+ +R I G + + NRR++ V Sbjct: 142 QALITEFNFEPERFD-IKGVGSQAPIANNRTGSGRALNRRVEFYV 185 >gi|323529150|ref|YP_004231302.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|323386152|gb|ADX58242.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 349 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 19/159 (11%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPE 247 +KRL D+ + + + TT + + D FD + LP Sbjct: 192 EKRLSDIQDNLRKSAESALQCKPAAAAPQSTTPQAVTLR-ADSLFR--FDGGNDAAMLPA 248 Query: 248 TIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 L + L T I I G+TD R LSL RA + + L GV+ Sbjct: 249 GRRALDAVARRLTTVTALREIRITGYTDRLGENAHNRS---LSLQRAQTVARYLRARGVT 305 Query: 306 EDRISKISGFAHHRLKI-----ASDPM---NSANRRIDI 336 + G A D + + NRR++I Sbjct: 306 SP--IAVRGLASANPVAECRQSRRDELVQCLAPNRRVEI 342 >gi|226226461|ref|YP_002760567.1| hypothetical protein GAU_1055 [Gemmatimonas aurantiaca T-27] gi|226089652|dbj|BAH38097.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 531 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 27/128 (21%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 +T +F ++ L L+ I +V+ + ISI GHTD + + A +N +L+ R Sbjct: 378 DTTLFSFDRAVVLKAGNDTLKVIVDVMKANPSIRISIEGHTDW--YGSEAYNN-KLAKSR 434 Query: 292 AYSAY-QVLMKSGVSEDRIS-KIS-------------GFAHHRLKIAS-----DPMN--- 328 A + Y Q+L +G D I ++ G A+ D Sbjct: 435 AEAVYKQLLKVAGTDADAIKGRVVWSSFGEQCILVRDGDTEQEPPPANRSRISDANRRAQ 494 Query: 329 SANRRIDI 336 +ANRR++I Sbjct: 495 AANRRVEI 502 >gi|213969192|ref|ZP_03397331.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato T1] gi|213926190|gb|EEB59746.1| peptidoglycan-associated lipoprotein [Pseudomonas syringae pv. tomato T1] Length = 151 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 52 FEYDSSDLKPEAMRSLDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 108 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 109 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 149 >gi|126727642|ref|ZP_01743474.1| OmpA family protein [Rhodobacterales bacterium HTCC2150] gi|126703058|gb|EBA02159.1| OmpA family protein [Rhodobacterales bacterium HTCC2150] Length = 199 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F + +L + + VI GHTD+ R N RLS +RA + Sbjct: 101 LFATDRYRITSKGRALLADFFNSSSAAAYVIV--GHTDS---RASDEYNMRLSQNRANAV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 V G R+ I + + + ANRR++I+ Sbjct: 156 ANVASSLG---ARVVDIRHYGERMPRATNRTAAGRQANRRVEIM 196 >gi|116329456|ref|YP_799176.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329940|ref|YP_799658.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122200|gb|ABJ80243.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123629|gb|ABJ74900.1| OmpA-family lipoprotein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 195 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 164 EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTG 223 + KEE+ P ++E+ A R + +AD++ + + G Sbjct: 22 SSAEKKEESAAPEPSAQEQSAAANRS---------VDVNSPEAIADSLNEKLKDFRYPDG 72 Query: 224 ILISIIDQRNTPMFDKSSSIPLP-----ETIVVLQKIGEVLAHSTEV--ISIRGHTDAS- 275 I P F + P + V + I E L + + I GHTDA Sbjct: 73 IT--------RPGFSYKKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHTDAVG 124 Query: 276 --PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + N S RA + Q L+K G+ +RI G D ++ NRR Sbjct: 125 PEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIIA-KGAGSSEPVSGLDAKDAKNRR 183 Query: 334 ID 335 + Sbjct: 184 VT 185 >gi|114046783|ref|YP_737333.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113888225|gb|ABI42276.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 191 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 A++ +++ GHTD N++LSL RA + ++L++ G + +R + + G Sbjct: 111 ANTETRLTLVGHTD---IVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFT-VIGKGIS 166 Query: 319 RLKIASD--PMNSANRRIDILVED 340 + NRR+ +V + Sbjct: 167 EPVADNHSSEGRRLNRRVQFIVNN 190 >gi|113969550|ref|YP_733343.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113884234|gb|ABI38286.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 191 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 A++ +++ GHTD N++LSL RA + ++L++ G + +R + + G Sbjct: 111 ANTETRLTLVGHTD---IVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFT-VIGKGIS 166 Query: 319 RLKIASD--PMNSANRRIDILVED 340 + NRR+ +V + Sbjct: 167 EPVADNHSSEGRRLNRRVQFIVNN 190 >gi|148360690|ref|YP_001251897.1| OmpA family transporter outer membrane protein [Legionella pneumophila str. Corby] gi|148282463|gb|ABQ56551.1| outer membrane protein, OmpA family protein [Legionella pneumophila str. Corby] Length = 240 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L I + ++ K + II MF SS L Sbjct: 84 LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 141 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + +L I + G TD R+ R +LS +A + L +G++ R+ Sbjct: 142 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 197 Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336 G+ + I+ + ++ NRRI+I Sbjct: 198 GYGD-KNAISDNAIIHGSAQNRRIEI 222 >gi|304312855|ref|YP_003812453.1| Outer membrane protein [gamma proteobacterium HdN1] gi|301798588|emb|CBL46818.1| Outer membrane protein [gamma proteobacterium HdN1] Length = 285 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIG--EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 + P + L I + L I + GH+D NW +S RA + Sbjct: 181 YASEQWKPDGKAQARLDLIAGYQKLDAGIRKIFVDGHSDTM---GRLGHNWEVSRLRANA 237 Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRI 334 + L+ GV E+ I + G + K + + ANRR+ Sbjct: 238 VREYLIAKGVPEEMIVMRYWGKSRPIDKRGNRKSSPANRRV 278 >gi|296269185|ref|YP_003651817.1| OmpA/MotB domain-containing protein [Thermobispora bispora DSM 43833] gi|296091972|gb|ADG87924.1| OmpA/MotB domain protein [Thermobispora bispora DSM 43833] Length = 193 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 13/155 (8%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 + + + + ++A+ + G I++ + +F + + L++I Sbjct: 43 EDLITPVEDVIAEVESLDGTESEEKQGEQITLALTAD-VLFPLDKATLTAKARQRLREIA 101 Query: 257 EVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E + + +I + GHTD N LS RA + +VL + + + G Sbjct: 102 EKIKSDGAGGLIRVEGHTDDQ---GSDAYNLALSRRRAEAVRRVLERELAGMNVTLQAKG 158 Query: 315 FAHHRLKIAS-------DPMNSANRRIDILVEDRQ 342 + R K+ + + + NRR++I+ R+ Sbjct: 159 YGESRPKVPNFIKGRPVEKNRAKNRRVEIIFTARR 193 >gi|54302438|ref|YP_132431.1| OmpA family protein [Photobacterium profundum SS9] gi|46915860|emb|CAG22631.1| hypothetical OmpA family protein [Photobacterium profundum SS9] Length = 252 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 14/163 (8%) Query: 184 LAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM------- 236 + K + +D+ + + D E R + + + + Sbjct: 80 QDEQIKSQNEDMVELTARNTELERIDINYNQAQIEIARLQQDLQLQSEERQALMLEVNVH 139 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P L +I E++ S E+ + G+ D R ++ N+ LS+ R + Sbjct: 140 FRTGSSDIEPLFQQQLDEIAELMKQSPEMSWQLAGYADR---RGDSQKNFDLSMRRVDAV 196 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L G+ D++ + + + S +RR+ + Sbjct: 197 RDYLESQGLDTDQLL-VDAYGDLEPLKSEQNFESDFFDRRVTL 238 >gi|254452426|ref|ZP_05065863.1| OmpA domain protein [Octadecabacter antarcticus 238] gi|198266832|gb|EDY91102.1| OmpA domain protein [Octadecabacter antarcticus 238] Length = 612 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS+ +L I E+L + I I G+TD+ N RLS RA + Sbjct: 470 FEPSSARIAGAGAAILDDITEILQRCADLRIEIAGYTDSQ---GSEDGNQRLSQQRADAV 526 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L V + G+ ++ + NRRI+ + Sbjct: 527 LDGLRVRRVPVASFRSV-GYGEADPIADNETADGREANRRIEFSL 570 >gi|163740457|ref|ZP_02147851.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10] gi|161386315|gb|EDQ10690.1| OmpA domain protein [Phaeobacter gallaeciensis 2.10] Length = 326 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + L + E L + + + + GHTD N +S RA + Sbjct: 222 FETGAVTLGAKPYDSLAALAEFLIQNPDFDVLLVGHTDTV---GSLEQNIAISERRADAV 278 Query: 296 Y-QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 ++L S V R+ ++G + ANRR+++++ R Sbjct: 279 RRRLLADSAVGGARV-AVAGAGFMAPLTTNLTPEGREANRRVEVVLIRR 326 >gi|261868235|ref|YP_003256157.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans D11S-1] gi|2828561|gb|AAC00068.1| outer membrane protein 34 [Aggregatibacter actinomycetemcomitans] gi|261413567|gb|ACX82938.1| outer membrane protein A [Aggregatibacter actinomycetemcomitans D11S-1] Length = 346 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I +A + + G+TD + A N +LS RA + Sbjct: 233 FAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 289 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 L+ GVS+ IS +G + D + +RR++I V Sbjct: 290 ANYLVSKGVSQQAISA-TGHGKANPVTGNKCDAVKGRKALIACLADDRRVEIAV 342 >gi|307609455|emb|CBW98949.1| hypothetical protein LPW_07341 [Legionella pneumophila 130b] Length = 240 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 11/146 (7%) Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 L I + ++ K + II MF SS L Sbjct: 84 LVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMF--SSPRLNEICYPGLNN 141 Query: 255 IGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + +L I + G TD R+ R +LS +A + L +G++ R+ Sbjct: 142 VIRLLNFYPQSTIYVAGFTDNVGSRSHKR---KLSQAQAETMMTFLWANGIAAKRLKA-E 197 Query: 314 GFAHHRLKIASDP---MNSANRRIDI 336 G+ + I+ + ++ NRRI+I Sbjct: 198 GYGD-KNAISDNAIIHGSAQNRRIEI 222 >gi|284042425|ref|YP_003392765.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684] gi|283946646|gb|ADB49390.1| OmpA/MotB domain protein [Conexibacter woesei DSM 14684] Length = 716 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F L + + I L + ++ GHTD+ N L L RA + Sbjct: 616 FRVGDDTLLAQGRRYARAIAPQLKGV-KRVTCTGHTDSDGGVVA---NRALGLARAKAVC 671 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L + GV ++ +G R + +D NRR+++ + R Sbjct: 672 AELRRLGVKAPLRTRSAG--ESRPRATNDTAQGRRLNRRVELTLSYR 716 >gi|284035326|ref|YP_003385256.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283814619|gb|ADB36457.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 399 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD+SS + PE+ L ++ VL S I IRGHTD N +LS DR + Sbjct: 297 FDQSSPVLRPESSTELDQLAAVLLESPTTKIEIRGHTDNQ---GDFDSNVKLSRDRCQAV 353 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323 L G++++R+ + G Sbjct: 354 IDYLASKGIAKNRLKAV-GRGPIDPVAP 380 >gi|261378312|ref|ZP_05982885.1| OmpA family protein [Neisseria cinerea ATCC 14685] gi|269145408|gb|EEZ71826.1| OmpA family protein [Neisseria cinerea ATCC 14685] Length = 257 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + E L + + L + + + GHTD F + N LS RA Sbjct: 93 LFGFDKDVLRVEAQENLNVLAQRLGQTNVQAVRVEGHTD---FMGAEKYNQELSERRANV 149 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ GV +IS +G + Sbjct: 150 VANYLVGRGVPAAKISA-AGLGESQ 173 >gi|319409315|emb|CBI82959.1| Outer membrane lipoprotein omp16 homolog [Bartonella schoenbuchensis R1] Length = 173 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F +SS + VL++ E L +++ GH D R N L R Sbjct: 62 DRVFFSLNSSSIELDAEYVLKRQAEWLLRYPHYFVTVEGHADD---RGTREYNLALGQRR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 + + L+ GVS R+ IS + R D ++ + NRR+ + + G Sbjct: 119 SIAVRDYLVSLGVSSQRMKTIS-YGKERPVAVCDDISCWNQNRRVVLTINSGNG 171 >gi|83720431|ref|YP_442168.1| OmpA family protein [Burkholderia thailandensis E264] gi|83654256|gb|ABC38319.1| OmpA family protein [Burkholderia thailandensis E264] Length = 224 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 101 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G I + N RR+++ V Q Sbjct: 158 VKSYLVSKGVPANKVY-TEGKGKRNP-ITGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 214 >gi|323491407|ref|ZP_08096592.1| Outer membrane protein [Vibrio brasiliensis LMG 20546] gi|323314533|gb|EGA67612.1| Outer membrane protein [Vibrio brasiliensis LMG 20546] Length = 203 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F SS P + ++++ E L I +RG+ AS N LS RA S Sbjct: 83 LFANDSSEIQPAFLAQIREMSEFLEAYPSTSIELRGY--ASKVGKPDY-NMALSERRAQS 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 L+ +GV+ DR+ +I GF L+ D ++ NR++ V +G Sbjct: 140 VEDALLDNGVASDRV-RIVGFGDTELEAFGDDEISHAKNRKVVATVVGHKG 189 >gi|149915621|ref|ZP_01904147.1| peptidoglycan-associated lipoprotein [Roseobacter sp. AzwK-3b] gi|149810513|gb|EDM70356.1| peptidoglycan-associated lipoprotein [Roseobacter sp. AzwK-3b] Length = 171 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S E VL + L + I GH D N L R Sbjct: 61 DRVLFAVDQSTLSSEAQAVLDGQAQWLMTNIDYSAVIEGHADEQ---GTREYNLALGARR 117 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR-IDIL 337 A + + L+ G++ +R+ K+ + R +++ + NRR + ++ Sbjct: 118 ANAVQEYLVSRGIAGNRL-KVVSYGKERPIELCSNEACYAKNRRAVTVI 165 >gi|186477671|ref|YP_001859141.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184194130|gb|ACC72095.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 590 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 11/106 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-----AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S + L + ++L + + + G++D N LS +R Sbjct: 482 FASSDAHVPQSAFDDLGQSAKLLQACAKSGHALKLEVAGYSDNV---GSESANRELSKER 538 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 A + L+K+GV D + G+ + R ++ + NRRI+ Sbjct: 539 ADAVRAFLVKAGVPADALIA-RGYGNVRAVASNATESGRFANRRIE 583 >gi|89890270|ref|ZP_01201780.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7] gi|89517185|gb|EAS19842.1| hypothetical protein BBFL7_02242 [Flavobacteria bacterium BBFL7] Length = 286 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 12/172 (6%) Query: 175 LPPLSKEKILAMKRKKRLQDLA---KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 +P ++ I A + + R +++ K+ +V D+I K ++ + + I Sbjct: 112 VPLKNRSNIKAQRYRNRRVEISVTYKRTIDIPKAVVNDSIEKYRSYDILKDSLQIGDKLV 171 Query: 232 RNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGH----TDASPFRNIARDNWR 286 N +F + + V+ I +L H I I+GH + R++ W Sbjct: 172 FNNVIFYPGRHVLRESSFPVMDSIINSLLLHKKYEIEIQGHICCLSPGVYGRDMDTGQWN 231 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 LS RA + L+K GV+ DR++ I A+ + + +RR++I + Sbjct: 232 LSKARAEQVKRFLVKYGVAADRLTTIGKQAN----FKTGKGDFYDRRVEIHI 279 >gi|48429443|gb|AAT42489.1| HMP-like outer membrane protein [Acinetobacter junii] Length = 284 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ + L I GHTD + + N RLSL RA Sbjct: 202 RVFFDTNKSNIKDQYKPEVAKVADALNTFPNATARIEGHTDNT---GPRKLNERLSLARA 258 Query: 293 YSAYQVLMKSGVSEDRISKISGFA 316 S L+ + GFA Sbjct: 259 NSVKSALVSEYNIDASRLSTQGFA 282 >gi|37704632|gb|AAR01588.1| OprF [Pseudomonas sp. MFY78] Length = 317 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS RA + Sbjct: 234 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRASAV 290 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 291 KQVLTGQYGVESSRVQSV-GYGESRPVA 317 >gi|255655882|ref|ZP_05401291.1| hypothetical protein CdifQCD-2_09334 [Clostridium difficile QCD-23m63] gi|296450696|ref|ZP_06892449.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296879187|ref|ZP_06903182.1| conserved hypothetical protein [Clostridium difficile NAP07] gi|296260540|gb|EFH07382.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296429730|gb|EFH15582.1| conserved hypothetical protein [Clostridium difficile NAP07] Length = 210 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%) Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249 S ++SG V ++ K V E T I + +D+ N MFD S + PE Sbjct: 40 SESISGSVEQDLAKNVNTSVEETFKKSGIPVKVDKSNGQVTFGERTMFDIDSDVLKPEAK 99 Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +L+ + + IS I GHTD N LS RAYS + ++ Sbjct: 100 EMLKMFVPKYMETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156 Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336 + + D+++K I + ++ + NS N RR+++ Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200 >gi|37704656|gb|AAR01600.1| OprF [Pseudomonas sp. MFY146] Length = 297 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ + + ++ + + + ++ G+TD+ N +LS RA S Sbjct: 215 FDFDKAVVKSQYLPDIKNVAQFMQQYPATSTTVNGYTDSV---GTDAYNLKLSQRRADSV 271 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI 322 Q L++ GVS R+ + G Sbjct: 272 RQALVQQGVSPSRVDAV-GHGKSDPVA 297 >gi|332291797|ref|YP_004430406.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169883|gb|AEE19138.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 292 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 25/204 (12%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + KG+ L D S + + + A K ++A++I++ Sbjct: 96 ADTIIKNSDGKGELLLTRLDDAGSEIQRKLNRKVEIIVSLKQARKTTPEEVEVAEEITTK 155 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + K +T G I + +F + S ++ L+K+ + L Sbjct: 156 IDRY------KNYEEDTIAKGDRILL----KNILFKTNYSYIHGKSYNDLKKLAKYLKEH 205 Query: 263 TEVI-SIRGHT-------DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 E+I I+GH D + R+ LS RA Y L GV++ R+ + G Sbjct: 206 PEIIFKIQGHVCCVDHGRDGINLKTGKRN---LSEARAKFIYDYLADQGVAKKRM-RYQG 261 Query: 315 FAHHRLKIASDPMNSANRRIDILV 338 F DP R++I V Sbjct: 262 FGSRFPL-GGDPSEDK--RVEIYV 282 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 229 IDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 +D+ + FD S++ E + + I + E ISI G+ D R N RL Sbjct: 22 VDRTHETFFDTDKSALIKTELASLNRFIASLPKDKIEDISIYGYCDD---RGTDAYNKRL 78 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAH---HRLKIA-SDPMNSANRRIDILVEDRQG 343 S DRA + + M GV++ I G RL A S+ NR+++I+V +Q Sbjct: 79 SQDRANTIKDIFMLQGVADTIIKNSDGKGELLLTRLDDAGSEIQRKLNRKVEIIVSLKQA 138 >gi|254787356|ref|YP_003074785.1| thrombospondin type 3 repeat family protein [Teredinibacter turnerae T7901] gi|237685616|gb|ACR12880.1| thrombospondin type 3 repeat family protein [Teredinibacter turnerae T7901] Length = 3177 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGE--VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S++ ET L + + A+ + I GH D + N LS RA + Sbjct: 3074 FAFNSAVLSAETQAQLDALAQGVAAANYDFRVKIAGHAD---WVGSEAFNQGLSEKRANA 3130 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 L + G+ + ++ + NRR++I Sbjct: 3131 VANYLSERLQLNAEKWDTRGYGEVKPVADNNSAQGRAQNRRVEI 3174 >gi|332297504|ref|YP_004439426.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] gi|332180607|gb|AEE16295.1| OmpA/MotB domain protein [Treponema brennaborense DSM 12168] Length = 1044 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 12/101 (11%) Query: 249 IVVLQKIGEVLAHS-TEVISIRGHTDASPFR-----NIARDNWRL---SLDRAYSAYQVL 299 I V+++I E+L + I GH + + A N L S RA + ++L Sbjct: 943 IRVIKRIAEILNKFKDYTVRIEGHANNVTGTEAEETSTANGNIPLVPLSEARAQTVKKML 1002 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 ++ GV R++ + G + + ++ NRR++ ++ Sbjct: 1003 IEFGVDGSRLTTV-GIGGRQPVVPRSDKDNWWKNRRVEFIL 1042 >gi|259908883|ref|YP_002649239.1| outer membrane protein A [Erwinia pyrifoliae Ep1/96] gi|224964505|emb|CAX56015.1| Outer membrane protein A [Erwinia pyrifoliae Ep1/96] gi|283478876|emb|CAY74792.1| Outer membrane protein A precursor [Erwinia pyrifoliae DSM 12163] Length = 355 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + N +LS Sbjct: 227 KSDVLFTFNKANLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD----PMNSA-------NRRIDIL 337 RA S L+ G+ ++IS G + +A +RR++I Sbjct: 284 EKRAQSVVDYLVSKGIPSNKISA-RGEGESNPVTGNTCDSVKGRAALIDCLSPDRRVEIQ 342 Query: 338 VE 339 V+ Sbjct: 343 VK 344 >gi|309751191|gb|ADO81175.1| Outer membrane protein P5 [Haemophilus influenzae R2866] Length = 358 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 302 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354 >gi|310816576|ref|YP_003964540.1| OmpA/MotB family protein [Ketogulonicigenium vulgare Y25] gi|308755311|gb|ADO43240.1| OmpA/MotB family protein [Ketogulonicigenium vulgare Y25] Length = 185 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S E +L + L ++ I I GH D N L R Sbjct: 75 DRILFAVDQSSVSSEASQILNGQAQWLQTNSQYGIVIEGHADEQ---GTREYNVALGARR 131 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR-IDIL 337 A + + L+ G+S +RI +S + R + + NRR + ++ Sbjct: 132 ANAVREYLISRGISANRIRTVS-YGKERPIAVCSAESCYTQNRRAVTVI 179 >gi|37704618|gb|AAR01581.1| OprF [Pseudomonas sp. MFY65] Length = 317 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + ++ GHTD+ N +LS RA + Sbjct: 234 FDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSV---GPDAYNQKLSERRANAV 290 Query: 296 YQVL-MKSGVSEDRISKISGFAHHRLKI 322 VL + GV R+ + G+ R Sbjct: 291 KDVLTQQYGVESTRVDSV-GYGETRPVA 317 >gi|37680143|ref|NP_934752.1| outer membrane protein [Vibrio vulnificus YJ016] gi|320156108|ref|YP_004188487.1| outer membrane protein [Vibrio vulnificus MO6-24/O] gi|326423995|ref|NP_761229.2| outer membrane protein [Vibrio vulnificus CMCP6] gi|37198889|dbj|BAC94723.1| outer membrane protein [Vibrio vulnificus YJ016] gi|319931420|gb|ADV86284.1| outer membrane protein [Vibrio vulnificus MO6-24/O] gi|319999372|gb|AAO10756.2| Outer membrane protein [Vibrio vulnificus CMCP6] Length = 223 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%) Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ + ++L + + I G TD++ N LS RA S L+ V+ R Sbjct: 134 LKGVAQILVEYPDTSLVIDGFTDST---GNDASNQILSERRAESVRSFLISQNVAAGRAV 190 Query: 311 KISGFAHHRLK--IASDPMNSANRRIDILVEDRQ 342 G ++ + NRR++I + + Sbjct: 191 A-RGNGERYPLCTNSTAEGRACNRRVEIQILPLK 223 >gi|129136|sp|P09146|OMPA_ENTAE RecName: Full=Outer membrane protein A; Flags: Precursor gi|40838|emb|CAA25062.1| unnamed protein product [Enterobacter aerogenes] Length = 350 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + N +LS Sbjct: 222 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEQY-NQKLS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ ++IS G + D + + +RR+ I Sbjct: 279 EKRAQSVVDYLVAKGIPANKISA-RGMGESDPVTGNTCDNVKARAALIDCLAPDRRVAIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|121608000|ref|YP_995807.1| OmpA domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552640|gb|ABM56789.1| OmpA domain protein [Verminephrobacter eiseniae EF01-2] Length = 182 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE +++ + + + + GHTD R N L RA + Sbjct: 81 FDYDSYVIKPEFQTLIEAHSRFIKTDTKRKLMLEGHTDE---RGGREYNLSLGQKRAEAV 137 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 + L GV + ++ +S F +L + ++ ++ NRR++ Sbjct: 138 RRALGLLGVPDSQMEAVS-FGKEKLAVQGHTEEAHAQNRRVE 178 >gi|241764618|ref|ZP_04762633.1| peptidoglycan-associated lipoprotein [Acidovorax delafieldii 2AN] gi|241365939|gb|EER60569.1| peptidoglycan-associated lipoprotein [Acidovorax delafieldii 2AN] Length = 178 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE +++ + S+ + + GHTD R N L RA + Sbjct: 77 FDYDSYVIKPEFQSLIEAHARFIKSSSNRKVVVEGHTDE---RGGREYNLALGQKRAEAV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L GV + ++ +S F +L + + + NRR ++ Sbjct: 134 RRSLGLLGVPDSQVEAVS-FGKEKLAVQGTGEDVHAQNRRAEL 175 >gi|254509401|ref|ZP_05121484.1| sodium-type flagellar protein MotY (Polar flagellum motorprotein) [Vibrio parahaemolyticus 16] gi|219547675|gb|EED24717.1| sodium-type flagellar protein MotY (Polar flagellum motorprotein) [Vibrio parahaemolyticus 16] Length = 168 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++S ++ L +I E + H+ ++ + + +TDA ++ +++ LS RA Sbjct: 62 YDRTSVELNKQSQKRLAQIAEYIRHNQDIDLVLVSTYTDAEDSKSASQN---LSERRAEV 118 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 119 LQDYFKSLGLPEDRI-RVQGYGKRRPVDDNASPIGKDRNRRVVISLGRTQ 167 >gi|332883506|gb|EGK03789.1| hypothetical protein HMPREF9456_01856 [Dysgonomonas mossii DSM 22836] Length = 660 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 ++ + LPE+ L + ++L + V I + H D + N +LS R Sbjct: 521 ENIFYEFDKATLLPESKKELDGLIDLLNTNPNVTIELSAHADR---KGSDDYNIKLSQRR 577 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 A S L+ G+S+DR++ + G K + Sbjct: 578 AESVVNYLIAGGISKDRLTAV-GKGKSEPKTVT 609 >gi|315181670|gb|ADT88583.1| outer membrane protein, hypothetical [Vibrio furnissii NCTC 11218] Length = 208 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +SS P + ++++ + L E I ++G+ A N LS R+ + Sbjct: 88 LFANNSSTIPPVFMNQIRQMADFLKLFPEASIELQGYASKV---GKADHNLALSKQRSEA 144 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 L++ GV+ RI +I G+ L + + ++ NRR+ V +G Sbjct: 145 VRLQLLRFGVTPKRI-RIVGYGDTVLAVNGEDQVSHAQNRRVTASVVGFKG 194 >gi|260582095|ref|ZP_05849889.1| outer membrane protein P5 [Haemophilus influenzae NT127] gi|260094727|gb|EEW78621.1| outer membrane protein P5 [Haemophilus influenzae NT127] Length = 350 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L + ++ + +++ G+TD + A + +LS +RA S Sbjct: 237 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 293 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 294 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 346 >gi|167950569|ref|ZP_02537643.1| flagellar motor protein MotD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 89 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%) Query: 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + + + P + W + YADF+T+L AFF+VM+ +++ ++ + + + K Sbjct: 3 RSRRKRVEEPVHHERWIVSYADFITLLFAFFVVMYSLSSVNEGKYRVLSNTLSQAFKEA 61 >gi|309973370|gb|ADO96571.1| Outer membrane protein P5 [Haemophilus influenzae R2846] Length = 359 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L + ++ + +++ G+TD + A + +LS +RA S Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 303 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355 >gi|294676060|ref|YP_003576675.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294474880|gb|ADE84268.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 223 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 4/106 (3%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRL 287 D NT F +S L + + + GHTD N L Sbjct: 64 QDVPNTVNFAFNSDRLDGTAQAALAQQANWIKQFPEVKFRVYGHTD---LVGSDAYNKAL 120 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L RA + L G+S R+ + + + + N+ NRR Sbjct: 121 GLRRARAVVAFLTGQGISRSRLEAVVSYGKTQPLVYDPGPNAQNRR 166 >gi|330984878|gb|EGH82981.1| OmpA family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 381 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%) Query: 42 TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 ++++A + + T A ++ FG +A G + P + + Sbjct: 6 SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSPAPAPVAKAA 65 Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + +++ + +L SE Sbjct: 66 AAPAAPAAGAENSTPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E ++ + +P + + + RL+ +K F+ R Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 L++I ++ ++ LP T+ + ++ +V+ + I GH D Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N ++S +RA S + SG+ +R+S+ G + A+D + NRR++IL+ Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285 Query: 339 EDR 341 + Sbjct: 286 TPQ 288 >gi|260363440|ref|ZP_05776286.1| outer membrane protein [Vibrio parahaemolyticus K5030] gi|308113738|gb|EFO51278.1| outer membrane protein [Vibrio parahaemolyticus K5030] Length = 166 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +F S P ++++ + L I ++G+ + ++ N LS RA Sbjct: 81 RVLFANDSDEINPVFRRQIRELSDFLKDYPTTSIELQGYASKT---GGSKHNQDLSERRA 137 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRL 320 + L+ G+ +R+ +I GF L Sbjct: 138 KNVRDALLSYGIEPNRV-RIIGFGDTHL 164 >gi|148251854|ref|YP_001236439.1| OmpA family protein [Bradyrhizobium sp. BTAi1] gi|146404027|gb|ABQ32533.1| putative exported protein of unknown function with OmpA family domain [Bradyrhizobium sp. BTAi1] Length = 727 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S P+ + LQ I + L + + I GHTDA DN LS R Sbjct: 601 FETGSWEIGPDQVAKLQVIADGLNQAIQRNPREVFLIEGHTDAV---GNETDNLSLSDRR 657 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + GV + ++ G+ LK + + NRR+ + Sbjct: 658 AESVATLLTQQFGVPAENLTS-QGYGEQYLKEQTQGPSRINRRVTV 702 >gi|302343856|ref|YP_003808385.1| peptidoglycan-associated lipoprotein [Desulfarculus baarsii DSM 2075] gi|301640469|gb|ADK85791.1| peptidoglycan-associated lipoprotein [Desulfarculus baarsii DSM 2075] Length = 179 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 8/110 (7%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 I + ++ FD E +L + L+ EV + + GH D R N Sbjct: 69 EIFENQDVH-FDYDRYDLSAEAKQILNDKAQFLSQHPEVTVIVEGHCDE---RGSNSYNM 124 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 L RA + Q LM GV+ DR+ +S + R + + +ANRR Sbjct: 125 ALGEKRARACEQYLMAMGVASDRLEVVS-YGEERPLVPGNTEEAYAANRR 173 >gi|37679367|ref|NP_933976.1| sodium-type flagellar protein MotY precursor [Vibrio vulnificus YJ016] gi|37198110|dbj|BAC93947.1| sodium-type flagellar protein MotY precursor [Vibrio vulnificus YJ016] Length = 295 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++++ + L +I E + +++++ + + +TD++ +++++ LS RA S Sbjct: 189 YERNGDKLTKASQKRLSQIAEYVRYNSDIDLVLVSTYTDSTDGTSVSQN---LSERRAES 245 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G+ EDRI ++ G+ R + NRR+ I + Sbjct: 246 LRDYFKALGLPEDRI-QVQGYGKRRPIADNATPIGKDKNRRVVISL 290 >gi|330814393|ref|YP_004358632.1| 18K peptidoglycan-associated outer membrane lipoprotein [Candidatus Pelagibacter sp. IMCC9063] gi|327487488|gb|AEA81893.1| 18K peptidoglycan-associated outer membrane lipoprotein [Candidatus Pelagibacter sp. IMCC9063] Length = 155 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 + F +S+ L K + S + I GH D R N L RA Sbjct: 50 DRVFFATNSTGLTSAAKTTLTKQAGYIKSSKIYVVIEGHADE---RGTREYNLALGERRA 106 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 +A LM GV++ I K+ + R + NRR + V+ + Sbjct: 107 NAARDYLMAKGVAKSSI-KVISYGKERPANTDSSKLAWSQNRR-SVTVKAK 155 >gi|294670740|ref|ZP_06735604.1| hypothetical protein NEIELOOT_02451 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307548|gb|EFE48791.1| hypothetical protein NEIELOOT_02451 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 278 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 16/114 (14%) Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FDK + + L + L + + I GHTD + N RLS RA Sbjct: 160 FDKGDLAHMNAQGKAELDDVAAKLGRLERLDQVRIIGHTD---YLGSDSYNMRLSQQRAE 216 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSA--------NRRIDILV 338 + L+ GV + + G + + N A NRR+++ V Sbjct: 217 TVRNYLISRGVPAN-VLYAYGAGETQPVKQCDNRGNRAELIACLQPNRRVELEV 269 >gi|193212309|ref|YP_001998262.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB 8327] gi|193085786|gb|ACF11062.1| peptidoglycan-associated lipoprotein [Chlorobaculum parvum NCIB 8327] Length = 169 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 FD SS E L++ + + +I+GH D R N L R Sbjct: 64 GDIFFDFDSSALSDEAQEQLKQNAAWMEKNPLVNATIQGHCDE---RGTDEYNLALGERR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 A +A + L+ +GVS R++ +S F ++ + NRR Sbjct: 121 ATAAKEYLITAGVSAGRLTAVS-FGEEMPFDPGHNEEAWAKNRR 163 >gi|72162680|ref|YP_290337.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Thermobifida fusca YX] gi|71916412|gb|AAZ56314.1| similar to Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Thermobifida fusca YX] Length = 356 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + S L+ + E + A ST + I GHTD + N A +N LSLDRA + Sbjct: 252 LFDLNESTLTDAADETLRAVAEEIDASSTTTVKIDGHTDNT--GNDAINN-PLSLDRAKA 308 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 + L + + +++G + + + NRR+ I Sbjct: 309 VEKRLKELITRDGITFEVAGHGSADPVADNGTEEGRAKNRRVTI 352 >gi|269962097|ref|ZP_06176451.1| sodium-type flagellar protein MotY [Vibrio harveyi 1DA3] gi|269833181|gb|EEZ87286.1| sodium-type flagellar protein MotY [Vibrio harveyi 1DA3] Length = 293 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H+ ++ + + +TD++ ++ ++ LS RA S Sbjct: 187 YERQGDQLTKASKKRLSQIADYVRHNQDIDLVLVATYTDSTDGKSASQS---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+S DRI ++ G+ R + NRR+ I + Q Sbjct: 244 LRTYFESLGLSGDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292 >gi|86748938|ref|YP_485434.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] gi|86571966|gb|ABD06523.1| OmpA/MotB [Rhodopseudomonas palustris HaA2] Length = 165 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ I L K + L +I GH D R N L R Sbjct: 57 DRVFFESDQTDLSPQAIATLDKQAQWLQSYNRYSFTIEGHADE---RGTREYNIALGARR 113 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G+ R+ IS + R + ++ S NRR Sbjct: 114 AQSVRNYLASRGIDPSRMRTIS-YGKERPVAVCNDISCWSQNRR 156 >gi|260911408|ref|ZP_05917999.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634455|gb|EEX52554.1| OmpA family protein [Prevotella sp. oral taxon 472 str. F0295] Length = 686 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D PE+ L ++ ++L + V I + H D +R N L+ R Sbjct: 519 DNIFYDLDKYTLRPESKQALDELVKLLNENPNVTIELSAHCD---YRGTPEYNKTLAQHR 575 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 A + L+++G++ R++ + G+ + K Sbjct: 576 ANAVVHYLIEAGIAPQRLTPM-GYGKEKPK 604 >gi|148554094|ref|YP_001261676.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148499284|gb|ABQ67538.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 295 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + E L + + + G+TD++ N LS RA Sbjct: 184 FDTGKTELSAEDKAHLCSTASTAEATENALMLVVGYTDST---GSDDFNQELSEKRANRV 240 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L ++ G R+ +G A +D + NRR+ + + Sbjct: 241 INYLQQACGWKPYRMLTPTGMAKADPAATNDTPEGKAQNRRVAVNIL 287 >gi|110636839|ref|YP_677046.1| outer membrane protein [Cytophaga hutchinsonii ATCC 33406] gi|110279520|gb|ABG57706.1| possible outer membrane protein [Cytophaga hutchinsonii ATCC 33406] Length = 1313 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + L + L ++ +L + I + G+TD A+ N LS R + Sbjct: 1210 FARGGTTLLESSYESLDQLYTLLTDNPTMRIELLGYTDNQ---GDAKLNVLLSEQRVAAI 1266 Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVEDR 341 L+ G++E RI K G A+ A++ NRR++ + + Sbjct: 1267 KDYLVGKGIAETRIGGKGYGGANPIASNATEETRQLNRRVEFKIVSK 1313 >gi|4579742|dbj|BAA75215.1| OmpA-like outer membrane protein [Aggregatibacter actinomycetemcomitans] Length = 346 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I +A + + G+TD + A N +LS RA + Sbjct: 233 FAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 289 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 L+ GVS+ IS +G + + +RR++I V Sbjct: 290 ANYLVSKGVSQQAISA-TGHGKANPVTGNKCDVVKGRKALIACLADDRRVEIAV 342 >gi|315223632|ref|ZP_07865486.1| outer membrane protein A [Capnocytophaga ochracea F0287] gi|314946413|gb|EFS98408.1| outer membrane protein A [Capnocytophaga ochracea F0287] Length = 340 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + V L KI L + I+I+ HTD+ R N L+ +A S Sbjct: 232 FNYGRTNIRYDASVQLAKIVAFLEANPTVKIAIKVHTDS---RGEDGYNMNLTETQAQSI 288 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 YQ L+ G+S +R++ G+ +L S+ + AN+R++ ++ ++ Sbjct: 289 YQWLVSKGISPNRLTA-KGYGETQLVNGCENGVPCSEEEHQANKRVEFIIIEK 340 >gi|256820532|ref|YP_003141811.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582115|gb|ACU93250.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 340 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + + V L KI L + I+I+ HTD+ R N L+ +A S Sbjct: 232 FNYGRTNIRYDASVQLAKIVAFLEANPTVKIAIKVHTDS---RGEDGYNMNLTETQAQSI 288 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDR 341 YQ L+ G+S +R++ G+ +L S+ + AN+R++ ++ ++ Sbjct: 289 YQWLVSKGISPNRLTA-KGYGETQLVNGCENGVPCSEEEHQANKRVEFIIIEK 340 >gi|288549451|ref|ZP_05967142.2| hypothetical protein ENTCAN_05522 [Enterobacter cancerogenus ATCC 35316] gi|288319143|gb|EFC58081.1| outer membrane protein A [Enterobacter cancerogenus ATCC 35316] Length = 358 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 230 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 287 EKRAQSVVDYLVSKGIPANKISP-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|310767218|gb|ADP12168.1| outer membrane protein A [Erwinia sp. Ejp617] Length = 355 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + N +LS Sbjct: 227 KSDVLFTFNKANLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDIL 337 RA S L+ G+ ++IS G + D + RR++I Sbjct: 284 EKRAQSVVDYLVSKGIPSNKISA-RGEGESNPVTGNTCDSVKGRQALIDCLSPDRRVEIQ 342 Query: 338 VE 339 V+ Sbjct: 343 VK 344 >gi|226197157|ref|ZP_03792734.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] gi|225930536|gb|EEH26546.1| ompA family protein [Burkholderia pseudomallei Pakistan 9] Length = 254 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + ++ I ++ + + + G+TD N RLS +RA + Sbjct: 147 FEDISADGRRQLGDLVASIKAKIFSI--NHLIVTGYTDRL---GSDEHNARLSSERARTV 201 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILVEDR 341 ++ G+ +I+ + A + + ++ NRR++I ++ + Sbjct: 202 ADYMIAEGIPAAKITAVGRGAADPVVVCNNGEQPELIRCLQKNRRVEIRIKQK 254 >gi|319776072|ref|YP_004138560.1| Outer membrane protein, OmpA/MotB [Haemophilus influenzae F3047] gi|319896881|ref|YP_004135076.1| outer membrane protein, ompa/motb [Haemophilus influenzae F3031] gi|329123235|ref|ZP_08251803.1| lipoprotein PlpD [Haemophilus aegyptius ATCC 11116] gi|317432385|emb|CBY80740.1| Outer membrane protein, OmpA/MotB [Haemophilus influenzae F3031] gi|317450663|emb|CBY86883.1| Outer membrane protein, OmpA/MotB [Haemophilus influenzae F3047] gi|327471444|gb|EGF16892.1| lipoprotein PlpD [Haemophilus aegyptius ATCC 11116] Length = 284 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + ++ K+ L + I I G+TD N LS R Sbjct: 148 GDFLFDFDKDTLSEKGKKIIDKVSYQLKSNGAKDIKIAGYTDRL---GTDSYNLELSQRR 204 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-------NRRIDIL 337 A S L+K GV +I+ I + ++K +D P A NRR++I+ Sbjct: 205 ANSVKNHLVKDGV-TAQITAIGYGKNPQIKSCNDVPQGKALKDCLHPNRRVEII 257 >gi|270723293|ref|ZP_06223417.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270315265|gb|EFA27588.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 149 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + ++ K+ L + I I G+TD N LS R Sbjct: 33 GDFLFDFDKDTLSEKGKKIIDKVSYQLKSNGAKDIKIAGYTDRL---GTDSYNLELSQRR 89 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA-------NRRIDIL 337 A S L+K GV +I+ I + ++K +D P A NRR++I+ Sbjct: 90 ANSVKNHLVKDGV-TAQITAIGYGKNPQIKSCNDVPQGKALKDCLHPNRRVEII 142 >gi|328542545|ref|YP_004302654.1| Omp16 protein [polymorphum gilvum SL003B-26A1] gi|326412291|gb|ADZ69354.1| Omp16 protein [Polymorphum gilvum SL003B-26A1] Length = 161 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F + S + L K + L + I++ GH D R N L R Sbjct: 52 DRVFFAEDQSTLSTQARATLDKQAQWLNLYSRYTITLEGHADE---RGTREYNIALGARR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQG 343 A SA L+ GV+ RI IS + R D S NRR + V + G Sbjct: 109 ANSARDYLVSRGVAASRIRTIS-YGKERPVAVCNDDSCWSQNRR-AVTVLNNAG 160 >gi|89890649|ref|ZP_01202159.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89517564|gb|EAS20221.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 663 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%) Query: 226 ISIIDQRN-TPM-------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 I I+D + P+ FD P+ + L KI + + + IR HTD+ Sbjct: 529 IPIVDCDDIAPLLNIKDIYFDFDRFNIRPDAALELSKILAFMELYPQTSVEIRSHTDSRA 588 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNS 329 + D LS RA S + L++ G+S R++ G+ +L + + Sbjct: 589 -PDAYNDV--LSEKRAQSTRKWLIEKGISASRLTA-KGYGERQLVNNCSNGVDCTPEEHQ 644 Query: 330 ANRRIDILV 338 NRR + +V Sbjct: 645 LNRRSEFIV 653 >gi|84687276|ref|ZP_01015156.1| OmpA family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664709|gb|EAQ11193.1| OmpA family protein [Rhodobacterales bacterium HTCC2654] Length = 222 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ +S++ + +L + + + GHTD N +L L RA + Sbjct: 76 FEFNSAVLDGQARQILARQASFIRQFPEVHFRVYGHTDKV---GSNAYNRQLGLRRAQAV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA 323 G+S R+ + + + +A Sbjct: 133 VNYFASQGISRSRVEAVVTYGETQPLVA 160 >gi|24212922|ref|NP_710403.1| OmpA family lipoprotein [Leptospira interrogans serovar Lai str. 56601] gi|24193591|gb|AAN47421.1| OmpA family lipoprotein [Leptospira interrogans serovar Lai str. 56601] Length = 195 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 27/181 (14%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 S K+E P S ++ A + + +AD++ + + G+ Sbjct: 22 SSAEKKEESAAPEPSTQEQSAAANRN--------VDVNSPEAIADSLNEKLKDFRYPDGL 73 Query: 225 LISIIDQRNTPMFDKSSSIPLP-----ETIVVLQKIGEVLAHSTEV--ISIRGHTDAS-- 275 P F + P + I E L + + I GHTDA Sbjct: 74 T--------RPGFSYKKADVTPGDFSEWSKTNAPVIKEGLRKLPDSYALEITGHTDAIGP 125 Query: 276 -PFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 + N S RA + Q L+K G+ +RI G D ++ NRR+ Sbjct: 126 EQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIV-TKGAGSSEPVSGLDAKDAKNRRV 184 Query: 335 D 335 Sbjct: 185 T 185 >gi|261211953|ref|ZP_05926239.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC341] gi|260838561|gb|EEX65212.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC341] Length = 294 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++++ + + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYIRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|255036435|ref|YP_003087056.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949191|gb|ACT93891.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 464 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + + + L I + ++GHTD + N LS R + Sbjct: 359 FSQGTEVLEDSALSDLDSIVSYFQKRQDLRLVLKGHTDNT---GSFEKNLELSNKRVETV 415 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L+ G+ +RI SG+ + + ++ +NRR+++ Sbjct: 416 KAYLIGKGIIAERIEG-SGYGSAQPRQMNQTEATKKSNRRVEV 457 >gi|189220464|ref|YP_001941104.1| Outer membrane protein or related peptidoglycan-associated (lipo)protein [Methylacidiphilum infernorum V4] gi|189187322|gb|ACD84507.1| Outer membrane protein or related peptidoglycan-associated (lipo)protein [Methylacidiphilum infernorum V4] Length = 179 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ ++KI + + I + GH D R N L RA + Sbjct: 76 FAFDSAAIPGSERGKIEKIADWMNQHPQLSILLAGHCDE---RGTEEYNRGLGERRAIAV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 + L+ G+S ++I IS + R ++ + NRR++ Sbjct: 133 REYLIGLGISAEKIHTIS-YGKDRPIAIGHTEADYAKNRRVE 173 >gi|58584412|ref|YP_197985.1| Outer membrane protein, pal-like [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418728|gb|AAW70743.1| Outer membrane protein, pal-like [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 159 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 15/116 (12%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 + FD S L + EVL +++ GHTD R N L Sbjct: 40 KEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDN---RGSYEYNVALGA 96 Query: 290 DRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMN-------SANRRID 335 RA +A ++ + E+RI S +A D N + NRR++ Sbjct: 97 RRADAAKNFMVSCTPYLENRIKTAS-KGETEPLVYVADDSKNSKYEKEHAKNRRVE 151 >gi|218780987|ref|YP_002432305.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762371|gb|ACL04837.1| OmpA/MotB domain protein [Desulfatibacillum alkenivorans AK-01] Length = 199 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS PE + +L+ L + + I+GH D R N L RA SA Sbjct: 98 FAFDSSDLSPEAMAILKDKAFFLRLNPSKGVLIKGHCDE---RGSLEYNLALGDRRANSA 154 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 L G+ RI+ IS + ++ + NRR + +E Sbjct: 155 KNFLTDLGIDARRINTIS-YGEEMPLDPASNEAAWAVNRRCEFALE 199 >gi|261342034|ref|ZP_05969892.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] gi|288315690|gb|EFC54628.1| OmpA family protein [Enterobacter cancerogenus ATCC 35316] Length = 161 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FDK+ + PE+ ++ + LA + + GHTD N LSL R Sbjct: 53 DKILFDKNDARLRPESETQIRTMASRLAATGLNHARMDGHTDNY---GEESYNEALSLKR 109 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + K G ++ + NRR+ +++ Sbjct: 110 ANAVADAWAKGANIPRGNLTTQGLGKKYPVASNSTPQGRAENRRVAVVI 158 >gi|146306310|ref|YP_001186775.1| OmpA domain-containing protein [Pseudomonas mendocina ymp] gi|330502226|ref|YP_004379095.1| OmpA domain-containing protein [Pseudomonas mendocina NK-01] gi|145574511|gb|ABP84043.1| OmpA domain protein [Pseudomonas mendocina ymp] gi|328916512|gb|AEB57343.1| OmpA domain-containing protein [Pseudomonas mendocina NK-01] Length = 166 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS E + L + L + + + GH D R N L RA + Sbjct: 67 FEYDSSDLKAEAMRALDVHAKDLKGNGARVVLEGHADE---RGTREYNMALGERRAKAVQ 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L+ GVS ++ +S + R + + NRR+++ Sbjct: 124 RYLVLQGVSPAQLELVS-YGEERPVATGNDEQSWAQNRRVEL 164 >gi|325285003|ref|YP_004260793.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324320457|gb|ADY27922.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 647 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 13/113 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + + +Q++ L VI +R HTDA R N LS RA Sbjct: 539 FDLDKSFIRIDGQITMQQVFAYLKEYPEVVIEVRSHTDA---RATNEYNLALSNRRAKET 595 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRID-ILVED 340 + L+ +G++ +R+S GF L S+ + NRR + I+V++ Sbjct: 596 VKYLLDNGIAPERVSG-KGFGESELTNNCDSNSKCSEEEHQKNRRSEFIVVQN 647 >gi|91775931|ref|YP_545687.1| OmpA/MotB [Methylobacillus flagellatus KT] gi|91709918|gb|ABE49846.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 363 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 17/118 (14%) Query: 236 MFDKSSSIPLPETIVVLQK-IGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRA 292 +F E L + E + EV + I GHTD + N +LS RA Sbjct: 247 LFGFDKDNLKEEGKAKLNADVVEKMKAHPEVELVLITGHTD--RIGDETY-NQKLSERRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRR--IDILVED 340 + Q L+ G+ E R+ + G + + NRR ++I V+ Sbjct: 304 NTVKQYLISQGIEESRLHAV-GKGESEPVVECAGVRGKKAIECLQPNRRVVVEIEVQR 360 >gi|256424845|ref|YP_003125498.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] gi|256039753|gb|ACU63297.1| OmpA/MotB domain protein [Chitinophaga pinensis DSM 2588] Length = 295 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH---TDASPFRNIARDNWRLSLDR 291 +F+ +I +P ++ +++ ++L+ +RGH T + LS++R Sbjct: 182 LFEPDRAILMPPSVYTVEQTAKLLSAYNGYSFEVRGHVNFTADLRVEPGTPP-FELSINR 240 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSANRRIDILVEDRQ 342 A Q+L++ G+ D+I+ G + L + N R+++L+ + Sbjct: 241 AKLVKQLLIQYGLPADKITA-RGMGNSELIYPYPQNLEEKLKNMRVEVLIYKPK 293 >gi|121601320|ref|YP_993883.1| OmpA family protein [Burkholderia mallei SAVP1] gi|167720677|ref|ZP_02403913.1| ompA family protein [Burkholderia pseudomallei DM98] gi|167739663|ref|ZP_02412437.1| ompA family protein [Burkholderia pseudomallei 14] gi|167816870|ref|ZP_02448550.1| ompA family protein [Burkholderia pseudomallei 91] gi|167846773|ref|ZP_02472281.1| ompA family protein [Burkholderia pseudomallei B7210] gi|167895360|ref|ZP_02482762.1| ompA family protein [Burkholderia pseudomallei 7894] gi|167903747|ref|ZP_02490952.1| ompA family protein [Burkholderia pseudomallei NCTC 13177] gi|254192034|ref|ZP_04898534.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] gi|121230130|gb|ABM52648.1| OmpA family protein [Burkholderia mallei SAVP1] gi|157987856|gb|EDO95621.1| ompA family protein [Burkholderia pseudomallei Pasteur 52237] Length = 209 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 86 LFDFDKAVLKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 143 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 199 >gi|119483418|ref|ZP_01618832.1| outer membrane protein F [Lyngbya sp. PCC 8106] gi|119458185|gb|EAW39307.1| outer membrane protein F [Lyngbya sp. PCC 8106] Length = 296 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 90/253 (35%), Gaps = 13/253 (5%) Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 P RS ++ + S + N L++ ++ + Sbjct: 52 PSSRSQAPLVETLLFRTSEPQSSQTSTPALNPTPLSPSPTTPQVQLTSGERQQLQTQLQE 111 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + + ++ LE + ++++ + R+ L D ++T + Sbjct: 112 LQQQLNTLIGRTAALETQLGISRPS---ETLEKRLQIVDRQLSLSDQTVPNAATPTPTRT 168 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVIS 267 + G+++++ + +F +++ P V+L I ++ + + Sbjct: 169 TTSTQAQTRFRASQGLVVTL---PSDVLFATNTNSLRPGASVILDTLIADLENYKGASVR 225 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-- 325 + HTD + A+DN LSL +A + L + SE I G+ + + +D Sbjct: 226 VAAHTDDT---GKAQDNLSLSLQQAEAIVAYLSTAIGSEYHWVAI-GYGEGQPTVENDST 281 Query: 326 PMNSANRRIDILV 338 NRRI++ + Sbjct: 282 TNKQLNRRIEVAI 294 >gi|94968752|ref|YP_590800.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94550802|gb|ABF40726.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 286 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 22/243 (9%) Query: 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLE 164 TK +G Q+ + L + K + DL ++ ++ Sbjct: 56 DSTKVQSPKGLGLRKQQMSWASLIPGLKVSVKGALDAGGKFIAEEITFSKDDLQTASMIQ 115 Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGI 224 + E + K + K+ + ++I V F+ + + Sbjct: 116 AGLTPTEQK----VDANKQSIGENKENIDTNKQQIDEN-QQAVNKRFDDLTDFDVKKEAV 170 Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 + F S L + T +I ++G D++ A Sbjct: 171 V----------YFVSGKSSLAAADKKALTDLAAEATKLTGYIIEVKGFADST---GNAAM 217 Query: 284 NWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 N LS DRA++ LM+ V I +++ NRR+++ V Sbjct: 218 NQTLSKDRAFAVVNFLMQDCSVPPRHIVSPGAMGISNPVASNETATGRKENRRVEVKVMV 277 Query: 341 RQG 343 +G Sbjct: 278 NKG 280 >gi|146311126|ref|YP_001176200.1| outer membrane protein A [Enterobacter sp. 638] gi|145318002|gb|ABP60149.1| OmpA domain protein transmembrane region-containing protein [Enterobacter sp. 638] Length = 351 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 223 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 279 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G + P + +RR++I Sbjct: 280 EKRAQSVVDYLVSKGIPANKISP-RGMGESNPVTGATCDNVKPRAALIDCLAPDRRVEIE 338 Query: 338 VE 339 V+ Sbjct: 339 VK 340 >gi|90412812|ref|ZP_01220812.1| hypothetical protein P3TCK_26075 [Photobacterium profundum 3TCK] gi|90326171|gb|EAS42598.1| hypothetical protein P3TCK_26075 [Photobacterium profundum 3TCK] Length = 319 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + L ++ + L + E I G TD++ I N ++S RA + Sbjct: 220 YQTGQVDVNDYGRYNLNEVAQTLQANPELTAEIIGRTDSTGTAAI---NAKVSEARANAV 276 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 Q L+ +GV R++ ++ A + R ++++++ Sbjct: 277 SQYLIDNGVDASRLT-VTSVADQNPLTDDSGKSLIERSVEVVIK 319 >gi|301156335|emb|CBW15806.1| unnamed protein product [Haemophilus parainfluenzae T3T1] Length = 285 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 18/116 (15%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD P V+ + L + + + G+TD N LS R Sbjct: 148 GDFLFDFDKDTLTPRGKEVVDNVAAQLKETGAKEVKVAGYTDRL---GSDAYNLDLSQRR 204 Query: 292 AYSAYQVLMKSGVSEDRISKISGFA-----------HHRLKIASDPMNSANRRIDI 336 A L++ GV+ + I+ + G+ H K D + NRR++I Sbjct: 205 ANRVKARLIEDGVTSE-ITAV-GYGKVPQVKACNGYKHASKAEKDCLRP-NRRVEI 257 >gi|241667271|ref|ZP_04754849.1| OmpA family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875822|ref|ZP_05248532.1| OmpA family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841843|gb|EET20257.1| OmpA family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 418 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH---------TDASPFRNIARDNWR 286 FD S + +L K+ L + +IRG+ TD + + N R Sbjct: 71 FDADSYNLNDQAKQILNKLYAYLKLTDTTTFTIRGYAGKVESKLLTDKN---ILTEYNIR 127 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS +RA S + L++ G+ ++ I + +D + N+R++I ++ R Sbjct: 128 LSKNRAESVEEYLVRRGLDKNNGIIIKALGYQDPIAPNDTSSNRAINQRVEITLKSR 184 >gi|167626696|ref|YP_001677196.1| OmpA family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596697|gb|ABZ86695.1| OmpA family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 418 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGH---------TDASPFRNIARDNWR 286 FD S + +L K+ L + +IRG+ TD + + N R Sbjct: 71 FDADSYNLNDQAKQILNKLYAYLKLTDTTTFTIRGYAGKVESKLLTDKN---ILTEYNIR 127 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 LS +RA S + L++ G+ ++ I + +D + N+R++I ++ R Sbjct: 128 LSKNRAESVEEYLVRRGLDKNNGIIIKALGYQDPIAPNDTSSNRAINQRVEITLKSR 184 >gi|24374850|ref|NP_718893.1| OmpA family protein [Shewanella oneidensis MR-1] gi|24349542|gb|AAN56337.1|AE015771_7 OmpA family protein [Shewanella oneidensis MR-1] Length = 196 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHH 318 A++ +++ GHTD N++LSL RA + ++L++ G + +R + + G Sbjct: 116 ANTETKLTLVGHTD---IVGTPEFNYQLSLQRAQNVKRILVEDYGFNPNRFT-VVGKGIS 171 Query: 319 RLKIASDPMNSA--NRRIDILVED 340 + NRR+ +V + Sbjct: 172 EPVADNRSSEGRGLNRRVQFIVNN 195 >gi|315126010|ref|YP_004068013.1| sodium-type flagellar protein MotY precursor [Pseudoalteromonas sp. SM9913] gi|315014524|gb|ADT67862.1| putative sodium-type flagellar protein MotY precursor [Pseudoalteromonas sp. SM9913] Length = 290 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPE-TIVVLQKIGEVLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRA 292 F E + L+ + ++ +S + GHTD + N LS +RA Sbjct: 184 FASGQRTVTAEKDLKFLKDLVHYIS-LDNRVSKVLVDGHTDNT---GSPLSNRLLSKERA 239 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSANRRI 334 L++ G+ +D + ++ I + S+NRR+ Sbjct: 240 DDVAARLIEFGLPKD-MLEVRAHGQRYPIIKNSKQGASSNRRV 281 >gi|254975524|ref|ZP_05271996.1| hypothetical protein CdifQC_09444 [Clostridium difficile QCD-66c26] gi|255092912|ref|ZP_05322390.1| hypothetical protein CdifC_09699 [Clostridium difficile CIP 107932] gi|255314653|ref|ZP_05356236.1| hypothetical protein CdifQCD-7_09900 [Clostridium difficile QCD-76w55] gi|255517327|ref|ZP_05385003.1| hypothetical protein CdifQCD-_09486 [Clostridium difficile QCD-97b34] gi|255650433|ref|ZP_05397335.1| hypothetical protein CdifQCD_09639 [Clostridium difficile QCD-37x79] gi|260683545|ref|YP_003214830.1| hypothetical protein CD196_1809 [Clostridium difficile CD196] gi|260687205|ref|YP_003218339.1| hypothetical protein CDR20291_1852 [Clostridium difficile R20291] gi|306520411|ref|ZP_07406758.1| hypothetical protein CdifQ_11096 [Clostridium difficile QCD-32g58] gi|260209708|emb|CBA63457.1| putative membrane protein [Clostridium difficile CD196] gi|260213222|emb|CBE04721.1| putative membrane protein [Clostridium difficile R20291] Length = 210 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%) Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249 S ++SG V ++ K V E T I + +D+ N MFD S + PE Sbjct: 40 SESISGSVEQDLAKNVNASVEETFKKSKIPVKVDKSNGQVTFGEKTMFDVDSDVLKPEAK 99 Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +L+ + + IS I GHTD N LS RAYS + ++ Sbjct: 100 EMLKMFVPKYIETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156 Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336 + + D+++K I + ++ + NS N RR+++ Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200 >gi|58422899|gb|AAW73249.1| OmpA [Serratia sp. MF 426] Length = 228 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F+ + + PE L ++ L+ + + G TDA A+ N RLS RA Sbjct: 122 LFNFNKATLKPEGQHALDQLYTQLSSLDPKDGSVVVLGFTDAV---GSAQYNQRLSEQRA 178 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 S L+ G+ D+IS G Sbjct: 179 QSVVDYLVSKGIPSDKISA-RGMGKSNPVTGD 209 >gi|330977950|gb|EGH77853.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 378 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 218 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 274 RALNRRVEILMTPQ 287 >gi|119944462|ref|YP_942142.1| OmpA/MotB domain-containing protein [Psychromonas ingrahamii 37] gi|119863066|gb|ABM02543.1| OmpA/MotB domain protein [Psychromonas ingrahamii 37] Length = 331 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIAR 282 ++I I F S P+ I L+ I + L E + + GHTD++ Sbjct: 217 LIIEIP-------FAFDSVKLAPKYIDQLKPIAQQLIKYPEAELIVIGHTDST---GPES 266 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDIL 337 N +LS RA L ++++RI + SG K ++ + NRR+ + Sbjct: 267 YNQQLSERRAALVADYLATHFAIAKNRIKE-SGRGELAPKASNATKDGRALNRRVSVF 323 >gi|89889605|ref|ZP_01201116.1| insulin-like peptidase, M16 family [Flavobacteria bacterium BBFL7] gi|89517878|gb|EAS20534.1| insulin-like peptidase, M16 family [Flavobacteria bacterium BBFL7] Length = 573 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 26/247 (10%) Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 +DE I K +L QK Q Q + S + + + K Sbjct: 346 MDEEIVKLQTELISEREYQKLQNQFETRFVSSNSRVEGIAASLATYNMLKGDTGLINKEL 405 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 D+ +SI +E+ + K L ++ L LA + + Sbjct: 406 DIYRSITREDIKRV----ANKYLKPNQRLELDYLAGS-----EPTEEEVAAAADEVKVVD 456 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI-GEVLAHSTEVISIRGHTDASPFRNI 280 + I N FD + L +I ++ +S+ I +TD R Sbjct: 457 NKLQI------NRIYFDNDKAAITTSAAKELDRIVAMMMKNSSMEILAETYTDT---RGS 507 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA------SDPMNSANRRI 334 N LS RA + L+ G++ +R+ + G + +D +RR Sbjct: 508 DSYNKTLSQKRADAVRGYLISKGIAANRVKAV-GRGEDNPVVDCESKTCTDEEYEQSRRT 566 Query: 335 DILVEDR 341 + + + Sbjct: 567 EFTITKK 573 >gi|83941418|ref|ZP_00953880.1| OmpA domain protein [Sulfitobacter sp. EE-36] gi|83847238|gb|EAP85113.1| OmpA domain protein [Sulfitobacter sp. EE-36] Length = 632 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ + + +I E+L + ++G+TD+ N LS RA S Sbjct: 498 FEPGSATIDASALGTMDQIAEILQDCRDIALEVQGYTDSQ---GREEMNLALSQSRAQSV 554 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 L V G+ ++D ANRRI+ + + Sbjct: 555 LNELRARRVITGSFVA-KGYGEESPVASNDTEEGREANRRIEFKLIN 600 >gi|317404170|gb|EFV84613.1| OmpA family domain-containing protein [Achromobacter xylosoxidans C54] Length = 312 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + E+ L ++G++L + + + + GHTD N LS RA + Sbjct: 219 FDTDKAEVKAESKAALDEMGKLLNANPKLKVYVVGHTDNQ---GTLAGNLELSQKRADAV 275 Query: 296 YQVLMKS 302 + L Sbjct: 276 VKALEAG 282 >gi|294663979|ref|ZP_06729397.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606252|gb|EFF49485.1| OmpA family outer membrane lipoprotein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 144 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 16/129 (12%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFR 278 T G LI++ D +FD S + VL +G L T + +RGHTDA + Sbjct: 24 TPCGYLITLND---RILFDFDKSDIRADAARVLDTLGAALTKVTAKDMQVRGHTDA---K 77 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS------DP-MNSAN 331 N LS RA + + + G + + +P N Sbjct: 78 GSDDYNQALSERRANAVLA--ALRARGAAQSANAKGDGESQPVAPNTVNGQDNPGGRQLN 135 Query: 332 RRIDILVED 340 RR++I + Sbjct: 136 RRVEIFLRT 144 >gi|253699085|ref|YP_003020274.1| OmpA/MotB domain protein [Geobacter sp. M21] gi|251773935|gb|ACT16516.1| OmpA/MotB domain protein [Geobacter sp. M21] Length = 1709 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 7/109 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD----ASPFRNIARDNWRLSLDR 291 F + E + +L+ + E + + GH D + P + DN LS +R Sbjct: 109 FRTGDAEISSEYLELLRGVLEKMRGRDNVRLHFVGHADTQQLSGPLKEKFGDNTGLSRER 168 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A + + ++ G + + + + NRR+++ V Sbjct: 169 AGTTAEYCQRALALPPEAISYQGLGDAKPVAPNSTEEGRALNRRVEVEV 217 >gi|209886401|ref|YP_002290258.1| OmpA/MotB domain protein [Oligotropha carboxidovorans OM5] gi|209874597|gb|ACI94393.1| OmpA/MotB domain protein [Oligotropha carboxidovorans OM5] Length = 160 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + + I L+K + L +I GH D R N L R Sbjct: 52 DRVFFESDQTELSQQAINTLEKQAQWLQQYPRYTFTIEGHADE---RGTREYNIALGAKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G++ R+ IS + R + ++ S NRR Sbjct: 109 AQSVRNFLASRGINPSRMRTIS-YGKERPVAVCNDISCWSQNRR 151 >gi|167581046|ref|ZP_02373920.1| OmpA family protein [Burkholderia thailandensis TXDOH] Length = 200 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 77 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 133 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G I + N RR+++ V Q Sbjct: 134 VKSYLVSKGVPANKVY-TEGKGKRNP-ITGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 190 >gi|302187242|ref|ZP_07263915.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 386 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 218 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 274 RALNRRVEILMTPQ 287 >gi|299773247|gb|ADJ38698.1| outer membrane protein P5 [Haemophilus parasuis] Length = 369 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L E++ + + G+TD N LS RA Sbjct: 249 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 305 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + + +RR++I V+ Sbjct: 306 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDALKARKSLIVCLAPDRRVEIQVQGS 364 Query: 342 Q 342 + Sbjct: 365 K 365 >gi|331010144|gb|EGH90200.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 381 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%) Query: 42 TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 ++++A + + T A ++ FG +A G + P + + Sbjct: 6 SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSPAPAPVAKAA 65 Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + +++ + +L SE Sbjct: 66 AAPAAPAAGAENSAPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E ++ + +P + + + RL+ +K F+ R Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 L++I ++ ++ LP T+ + ++ +V+ + I GH D Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N ++S +RA S + SG+ +R+S+ G + A+D + NRR++IL+ Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285 Query: 339 EDR 341 + Sbjct: 286 TPQ 288 >gi|323493119|ref|ZP_08098250.1| putative sodium-type flagellar protein MotY precursor [Vibrio brasiliensis LMG 20546] gi|323312590|gb|EGA65723.1| putative sodium-type flagellar protein MotY precursor [Vibrio brasiliensis LMG 20546] Length = 304 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ E + L + L I + GHTD+ N LS RA Sbjct: 180 FNIGQKSLSSEQLTTLAALNSYLQADPSVSKILVDGHTDS---SGARASNLALSRVRAEL 236 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L GVS+ + ++ + + NRR+ + Sbjct: 237 VSKQLHHLGVSQS-MIEVRAHGSRYPIATNTTTAGKAKNRRVTL 279 >gi|315180476|gb|ADT87390.1| hypothetical protein vfu_A02253 [Vibrio furnissii NCTC 11218] Length = 271 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L+ I E++ ++ + I GH+D+ N +S RA Sbjct: 167 FQSGVLALTQNQRSQLEAISELVLFDPKIKTVRITGHSDS---HGDTVVNLSVSRRRADD 223 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 +M +GV + + +I G A++ ANRR++I + R Sbjct: 224 VAYWMMMAGVPTE-MMEIRGQGGRYPVGNNATEEGRLANRRVEIELVRR 271 >gi|298488773|ref|ZP_07006801.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156691|gb|EFH97783.1| OmpA family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 376 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 23/303 (7%) Query: 42 TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 ++++A + + T A ++ FG +A G + P + + Sbjct: 6 SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSPAPAPVAKAA 65 Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + +++ + +L SE Sbjct: 66 AAPAAPAAGAENSAPWYWPFGSKDNAQAKPDAVADKPADKPAAPALVAKSETDSKWWWPF 125 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E ++ + +P + + + RL+ +K F+ R Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 L++I ++ ++ LP T+ + ++ +V+ + I GH D Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N ++S +RA S + SG+ +R+S+ G + A+D + NRR++IL+ Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285 Query: 339 EDR 341 + Sbjct: 286 TPQ 288 >gi|149184887|ref|ZP_01863204.1| hypothetical protein ED21_17577 [Erythrobacter sp. SD-21] gi|148830998|gb|EDL49432.1| hypothetical protein ED21_17577 [Erythrobacter sp. SD-21] Length = 242 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 44/168 (26%) Query: 210 NIVKGVLFETTRTGILISI------IDQRNTPMFDKSSSIPLPETIVVLQKIGEVL---- 259 I+ + G+ + I + + +FDK + K+ + Sbjct: 58 EILNDLQQSLKDRGLQVEIDTKTGVLRLPDDVLFDKGQWELTERGQAAISKVASAMVEVL 117 Query: 260 --------------AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS--- 302 H + + + GHTD+ + +N+ LS+ RA + + +L ++ Sbjct: 118 PCYTASDLCEGERSPHLIDAVFVEGHTDSD-VMSGGMNNYGLSVRRAETTFTMLQRNQPA 176 Query: 303 ------------GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 G + I +SG+ R D + NRRID+ Sbjct: 177 LRGFLNRPAGEDGSAP--ILSLSGYGPDRPVDRGDSEEAKKRNRRIDL 222 >gi|186472020|ref|YP_001859362.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184194352|gb|ACC72316.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 371 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 14/113 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S+ E + + L +V+++ G+TD N LS RA Sbjct: 206 LFDFDSAKLKAEGFEAVDVLASNLKRVKAIDVVTVIGYTDRF---GSVAHNRDLSRRRAQ 262 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPM----NSANRRIDILV 338 + L + GV + G + P + NRR++I V Sbjct: 263 AVADALKQRGVDPGHFD-VRGAGSTAPVVTCPGPKKPAVIECLAPNRRVEIRV 314 >gi|71066157|ref|YP_264884.1| outer membrane protein OprF [Psychrobacter arcticus 273-4] gi|71039142|gb|AAZ19450.1| outer membrane protein OprF, OmpA/OmpF family [Psychrobacter arcticus 273-4] Length = 240 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 + +FD ++ + VL+ + + ++ +++ GHTD + + +LS Sbjct: 129 QFNVLFDFDNAGIKSKHSAVLRGMTNFIQAYPQIAVTLEGHTDN---KGPESYHLKLSES 185 Query: 291 RAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 R +L+ GV R+S + G+ +++ NRR+ +V R Sbjct: 186 RVNMVKNILVDKYGVDAMRLSTV-GYGETMPVDSNNTEKGRQNNRRVVAIVSQR 238 >gi|320325666|gb|EFW81728.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. B076] Length = 381 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 103/303 (33%), Gaps = 23/303 (7%) Query: 42 TVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLS 101 ++++A + + T A ++ FG +A G + P + + Sbjct: 6 SLVLALCIAVTGCAQTPQSDSAATGGHWWQFGSGSESADAGAAAKAPAPSLAPAPVAKAA 65 Query: 102 IDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKST 161 + + + +++ + +L SE Sbjct: 66 AAPAAPAAGAENSAPWYWPFGSKDKAQAKPDAVADKTADKPAAPALVAKSETDSKWWWPF 125 Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 E ++ + +P + + + RL+ +K F+ R Sbjct: 126 GSEGKKDEPKALPMPDPKVTQAWLDEYEPRLRA----------------AIKDSPFQLER 169 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNI 280 L++I ++ ++ LP T+ + ++ +V+ + I GH D Sbjct: 170 REDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGP 226 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N ++S +RA S + SG+ +R+S+ G + A+D + NRR++IL+ Sbjct: 227 TEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILM 285 Query: 339 EDR 341 + Sbjct: 286 TPQ 288 >gi|37498966|gb|AAQ86765.2| hemagglutinin antigen [Avibacterium paragallinarum] gi|48249488|gb|AAT40990.1| hemagglutinin antigen [Avibacterium paragallinarum] Length = 345 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 232 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 288 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 289 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 342 >gi|312142545|ref|YP_003993991.1| OmpA/MotB domain protein [Halanaerobium sp. 'sapolanicus'] gi|311903196|gb|ADQ13637.1| OmpA/MotB domain protein [Halanaerobium sp. 'sapolanicus'] Length = 352 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SS L ++ VL +I ++L + E + + GHTD ++ N LS RA S Sbjct: 248 FEFDSSQILADSHDVLAEIAKLLLENPELRLYVVGHTDD--LGSLQY-NRNLSERRAESV 304 Query: 296 YQVLMKS-GVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+ + ++ DR IS G ++ + NRR+ ++ Sbjct: 305 VDFLIDNHDIASDRLISAGVGPLAPESTNKTESGRALNRRVVLV 348 >gi|157736533|ref|YP_001489216.1| periplasmic protein [Arcobacter butzleri RM4018] gi|157698387|gb|ABV66547.1| conserved hypothetical protein, probable periplasmic protein [Arcobacter butzleri RM4018] Length = 329 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 130/335 (38%), Gaps = 55/335 (16%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD M L F+ + +I A + +Y Q+ E Sbjct: 13 W-ISYADLMAGL--LFVFILVIGAI-------VIKY---------------VYAQSSLES 47 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + K L + TKN + ++ K L+ + + E+ NS + Sbjct: 48 SEEAKSQLFYELAKTKNLYESTKDELDKAKNQINLKLSEIEKLKALLLEYELNSKDEKDK 107 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ--DLAKKISSTLSGL---- 206 K + ++ I+ +++ K +L +K ++ D+AK TL+G+ Sbjct: 108 SEKLALELSEKTNLISLKDDELKLLADKLLVLTQVHQKMVEEFDIAKLKIKTLTGIKLNV 167 Query: 207 ---VADNIVKGVLFETTRTGILIS---IIDQRNTPMFDKS----SSIPLPETIVVLQKIG 256 + + + K + + I S + DQ + + ++S S++ +L Sbjct: 168 ISKLREKLGKSINIDEKSGAIKFSSNILFDQNSYILKEESKKELSTVLKQYLNTLLDD-- 225 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI---- 312 + + E I+I GHT++ N +LS RA + Q L +S + + ++ Sbjct: 226 KEIKKYIESITIEGHTNSD---GTYLSNLQLSQQRALAVMQFLYESNIIDKKLLGTYVNS 282 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDI--LVEDRQG 343 SG + L + + +++ RRI+I +++ + Sbjct: 283 SGRSSSDLILKDGVEDKDAS-RRIEIKFTIKNEEA 316 >gi|260890422|ref|ZP_05901685.1| fibronectin-binding protein [Leptotrichia hofstadii F0254] gi|260860042|gb|EEX74542.1| fibronectin-binding protein [Leptotrichia hofstadii F0254] Length = 149 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 10/110 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ ++ +++I L + I + GHTD++ + N +LS RA + Sbjct: 36 FNIDGNVLNESEASTIREIVNDLNKYGKSGTIDVIGHTDST---GSQKHNLKLSETRAKN 92 Query: 295 AYQVLMKSGVSEDRIS--KISGFAHHRLKIASDPMNSA--NRRIDILVED 340 +++ + G+ R S KI G + D + NRR++IL+ + Sbjct: 93 FARLMREFGLD-KRFSFGKIKGGGANSPVDTDDRVEGRYNNRRVEILLNN 141 >gi|260219497|emb|CBA26342.1| Peptidoglycan-associated lipoprotein [Curvibacter putative symbiont of Hydra magnipapillata] Length = 167 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + E L+ + L A + +SI GHTD R N L RA + Sbjct: 66 FDYDSFVIRSEFQATLEAHAKYLKADKSRKVSIEGHTDE---RGGREYNLALGQKRAEAV 122 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRID 335 + L GVS+ ++ IS + + + + + NRR + Sbjct: 123 RKALQLQGVSDAQMEAIS-YGKEKPAVLGNSEAALEKNRRAE 163 >gi|48249486|gb|AAT40989.1| hemagglutinin antigen [Avibacterium paragallinarum] Length = 345 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 232 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 288 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 289 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 342 >gi|313191694|emb|CBW30515.1| putative outer membrane protein A [Bordetella petrii] gi|313191698|emb|CBW30516.1| putative outer membrane protein A [Bordetella petrii] gi|313191702|emb|CBW30517.1| putative outer membrane protein A [Bordetella petrii] Length = 164 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE +L ++ + + I GHTD+ A N +LS RA S Sbjct: 87 FFDFDKSTLKPEGRQLLDQVAQQASGIDLETIIAVGHTDS--IGTEAY-NQKLSERRAAS 143 Query: 295 AYQVLMKSGVSEDRIS 310 L+ GV +RI Sbjct: 144 VKSYLVSKGVDPNRIY 159 >gi|209519335|ref|ZP_03268134.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209500219|gb|EEA00276.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 215 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD +I P L ++ + + + GHTD + A ++ RLSL Sbjct: 97 QADALFDFDKAILKPAGKDRLSELASKIQGINLEVVVATGHTD--RIGSDAYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ GV +RI G N N RR+++ V Sbjct: 154 RAQAVKAFLVSKGVEANRIY-TEGKGRRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|320327051|gb|EFW83065.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330876989|gb|EGH11138.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 381 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 159 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 218 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 219 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 274 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 275 RALNRRVEILMTPQ 288 >gi|150024426|ref|YP_001295252.1| OmpA family outer membrane protein [Flavobacterium psychrophilum JIP02/86] gi|150025241|ref|YP_001296067.1| OmpA family outer membrane protein [Flavobacterium psychrophilum JIP02/86] gi|149770967|emb|CAL42434.1| Probable outer membrane protein, OmpA family [Flavobacterium psychrophilum JIP02/86] gi|149771782|emb|CAL43256.1| Probable outer membrane protein, OmpA family [Flavobacterium psychrophilum JIP02/86] Length = 644 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S+ + V L KI VL + I IR HTD+ LS RA S Sbjct: 536 FDLNKSVIRKDASVELAKILTVLNLNPTIKIDIRSHTDSRQTAAYNMS---LSDRRAKST 592 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 + L++ G+S DR++ G+ +L + + NRR + ++ Sbjct: 593 IEWLVQKGISPDRLTG-RGYGESQLVNECSDGVNCTGEQHQLNRRSEFII 641 >gi|145633105|ref|ZP_01788837.1| Outer membrane protein P5 [Haemophilus influenzae 3655] gi|144986331|gb|EDJ92910.1| Outer membrane protein P5 [Haemophilus influenzae 3655] Length = 359 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L + ++ + +++ G+TD + A + +LS +RA S Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 303 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355 >gi|148555193|ref|YP_001262775.1| OmpA/MotB domain-containing protein [Sphingomonas wittichii RW1] gi|148500383|gb|ABQ68637.1| OmpA/MotB domain protein [Sphingomonas wittichii RW1] Length = 373 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S E +L A + + + + GH D + N LS RA S Sbjct: 269 FFDWDKSDITAEAASILDNAANAYATTGQARVQLAGHADK---SGSDQYNVGLSQRRADS 325 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 L GV + I+ F R + + NRR++I Sbjct: 326 VKAYLAGKGVPDSAIT-TEAFGESRPLVETADGVREPQNRRVEI 368 >gi|163756036|ref|ZP_02163152.1| OmpA/MotB [Kordia algicida OT-1] gi|161323910|gb|EDP95243.1| OmpA/MotB [Kordia algicida OT-1] Length = 277 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 17/178 (9%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQR---- 232 + L + K+ + + K +S + N K + E ++ I + R Sbjct: 98 EQEAKGELPTETTKQNERIGVKKHRKVSISASKNDHKPKVVERKENIYVVPINELRVGNT 157 Query: 233 ---NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT-----DASPFRNIARD 283 F + + L+K+ L + I ++GH D S N Sbjct: 158 YALGKINFKTGRVTLIKSSKKELEKLVRFLKKNRNIHIEVQGHVCCGGDDDSDALNSETG 217 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL---KIASDPMNSANRRIDILV 338 LS+DRA Y+ L+ G+S++R++ G+A SANRR++I + Sbjct: 218 TETLSVDRARFIYKYLISRGISKERLT-YKGYAFKAPLRFPEKGSRDRSANRRVEIEI 274 >gi|153831593|ref|ZP_01984260.1| OmpA family protein [Vibrio harveyi HY01] gi|148872103|gb|EDL70920.1| OmpA family protein [Vibrio harveyi HY01] Length = 350 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + ++ I + GHTD N +S RA Sbjct: 212 FQFGQKTLSRSQQSTLAALYSYISVDDRVTKILVDGHTDNV---GSQLANLNVSRQRAEQ 268 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L++ GV + ++ +++ + NRR+ + Sbjct: 269 VAEALVQQGVDRS-LIEVRAHGSRYPIASNNTQAGQAKNRRVTL 311 >gi|66047081|ref|YP_236922.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63257788|gb|AAY38884.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 386 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 218 GHADT---SGPTDANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 274 RALNRRVEILMTPQ 287 >gi|251793057|ref|YP_003007783.1| peptidoglycan-associated lipoprotein [Aggregatibacter aphrophilus NJ8700] gi|247534450|gb|ACS97696.1| peptidoglycan-associated lipoprotein [Aggregatibacter aphrophilus NJ8700] Length = 154 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%) Query: 220 TRTGILIS-IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPF 277 T G + + + NT +F E + +L L + + + GHTD Sbjct: 36 TFGGYSVQDLQQRYNTVLFGFDKYDIQGEYVQILDAHAAYLNATPATSVRVEGHTDE--- 92 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333 R N L RA++ L GV +IS +S + + + S NRR Sbjct: 93 RGTPEYNMALGERRAHAVQNYLTSKGVQAGQISTVS-YGEEKPAELGHDEAAYSKNRR 149 >gi|229844879|ref|ZP_04465017.1| outer membrane protein P5 [Haemophilus influenzae 6P18H1] gi|229812260|gb|EEP47951.1| outer membrane protein P5 [Haemophilus influenzae 6P18H1] Length = 355 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L + ++ + +++ G+TD + A + +LS +RA S Sbjct: 242 FAFGKANLKPQAQATLNSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 298 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 299 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 351 >gi|114766590|ref|ZP_01445546.1| OmpA family protein [Pelagibaca bermudensis HTCC2601] gi|114541206|gb|EAU44258.1| OmpA family protein [Roseovarius sp. HTCC2601] Length = 194 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F P+ L++ + + I GHTDA +I N RLS +RA + Sbjct: 97 FATDKYYISPKGKARLEEFFN--SATAFGFIIAGHTDAR--ASIEY-NRRLSYNRANAVA 151 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 V +G RI + G+ + + + NRR++IL Sbjct: 152 SVARGTG---ARIIDVRGYGEEYPVATNRTVEGMAKNRRVEIL 191 >gi|322832273|ref|YP_004212300.1| OmpA/MotB domain protein [Rahnella sp. Y9602] gi|321167474|gb|ADW73173.1| OmpA/MotB domain protein [Rahnella sp. Y9602] Length = 358 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 24/125 (19%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G+TD + N +LS Sbjct: 230 KSDVLFNFNKATLKPEGQQALDQLYSQLSSIDPKDGSVIVLGYTD--RIGSEQY-NQKLS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334 RA S L+ G+ ++IS ++G L P RR+ Sbjct: 287 EQRAQSVVDYLVSKGIPANKISAQGQGKSNPVTGSTCDSVKGRAALIDCLAPD----RRV 342 Query: 335 DILVE 339 +I V+ Sbjct: 343 EIEVK 347 >gi|262066137|ref|ZP_06025749.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC 33693] gi|291380232|gb|EFE87750.1| fibronectin-binding protein [Fusobacterium periodonticum ATCC 33693] Length = 93 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%) Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +L + + + + +++ GHTD+ + N LS RA + L++ G++E+RI Sbjct: 3 EMLNNLKDFIEQNNYEVTLEGHTDS--IGSNQY-NIGLSRRRAEAVKAKLIEFGLAEERI 59 Query: 310 SKISGFAHHRLKIASDPMNSA--NRRIDILVEDR 341 I ++ NRR++ + R Sbjct: 60 VGIEAKGEEYPVATNETPEGRLQNRRVEFRLVQR 93 >gi|156976199|ref|YP_001447105.1| hypothetical protein VIBHAR_04970 [Vibrio harveyi ATCC BAA-1116] gi|156527793|gb|ABU72878.1| hypothetical protein VIBHAR_04970 [Vibrio harveyi ATCC BAA-1116] Length = 350 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + ++ I + GHTD N +S RA Sbjct: 212 FQFGQKTLSRSQQSTLAALYSYISVDDRVTKILVDGHTDNV---GSQLANLNVSRQRAEQ 268 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L++ GV + ++ +++ + NRR+ + Sbjct: 269 VAEALIQQGVDRS-LIEVRAHGSRYPIASNNTQAGQAKNRRVTL 311 >gi|83854895|ref|ZP_00948425.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1] gi|83842738|gb|EAP81905.1| OmpA domain protein [Sulfitobacter sp. NAS-14.1] Length = 632 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ T+ + +I E+L + ++G+TD+ N LS RA S Sbjct: 498 FEPGSATIDASTLGTMDQIAEILQDCRDIALEVQGYTDSQ---GREEMNLALSQSRAQSV 554 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVED 340 L V G+ ++D ANRRI+ + + Sbjct: 555 LNELRARRVITGSFVA-KGYGEESPVASNDTEEGREANRRIEFKLIN 600 >gi|261855938|ref|YP_003263221.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261836407|gb|ACX96174.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 207 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 6/101 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD P L K+ + I + G+TD+ + N LS RA + Sbjct: 100 FDFDKYNLKPAGKEALDKLISEMGDMNSIAKIKVVGYTDSI---GTEKYNIGLSERRANT 156 Query: 295 AYQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRI 334 + L + D+I ++ G A + + NRR+ Sbjct: 157 VAKYLTAHNIPADKIETQGMGEADPVASNKTKEGRAKNRRV 197 >gi|19881377|gb|AAM00931.1|AF491823_1 hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341 >gi|293390286|ref|ZP_06634620.1| OmpA-like outer membrane protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950820|gb|EFE00939.1| OmpA-like outer membrane protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 346 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I +A + + G+TD + A N +LS RA + Sbjct: 233 FAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTD--RIGSDAY-NQKLSQRRAETV 289 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 L+ GVS+ IS +G S D + +RR++I V Sbjct: 290 ANYLVSKGVSQQAISA-TGHGKANPVTGSKCDAVKGRKALIACLADDRRVEIAV 342 >gi|157962526|ref|YP_001502560.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847526|gb|ABV88025.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 324 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 10/142 (7%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 + + + + VL T I + + R +F SS +T + + I Sbjct: 186 VRPAIDPMHKPLDKQQVLITPT---INVQSVSIRGNSVFGFDSSKLT-DTSALDEVIKSA 241 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 LA IS+ +TD+ R N L+ RA + + GV+ RI I Sbjct: 242 LASKNASISVTAYTDSL---GAERYNLALAKRRAEATQAYFITHGVAPSRIH-IDWKGEE 297 Query: 319 RLKIASDP--MNSANRRIDILV 338 ++ + NRR++I + Sbjct: 298 NPVSSNMTAKGRALNRRVEIEI 319 >gi|126668392|ref|ZP_01739349.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] gi|126627101|gb|EAZ97741.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter sp. ELB17] Length = 189 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ E+ VL L+ + + GH D R + N L RA + Sbjct: 88 FDFDTAEISAESRDVLVAHARYLSANPSMNARLEGHADD---RGTSEYNLALGERRANAV 144 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337 + L+ +G S ++ IS + + + SD S NRR++++ Sbjct: 145 QRFLIVNGASRGQLETIS-YGEEKPAVQGMSDSARSQNRRVELI 187 >gi|86358030|ref|YP_469922.1| OmpA family membrane protein [Rhizobium etli CFN 42] gi|86282132|gb|ABC91195.1| putative outer membrane protein, OmpA family [Rhizobium etli CFN 42] Length = 738 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ L+K+ + + +E I GHTDA + N LS R Sbjct: 623 FATGSAEIPMTQARTLRKVADAINQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 679 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S VL G+ + + G+ LK+ + NRR+ I Sbjct: 680 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTPGPEQENRRVTI 724 >gi|300776237|ref|ZP_07086095.1| possible outer membrane protein [Chryseobacterium gleum ATCC 35910] gi|300501747|gb|EFK32887.1| possible outer membrane protein [Chryseobacterium gleum ATCC 35910] Length = 508 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 5/113 (4%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 + + F+ + + PE+ L ++ + + GHTD + A N Sbjct: 364 VEVEKTLKDIYFNFNKATIRPESNEKLDLAASIIKENGGNYLLTGHTD---IKGNAAYNL 420 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRIDI 336 RLS +RA + L G++++ + S+ G A ASD A+R++ + Sbjct: 421 RLSKERAAAVVGALESRGINKNVLKSRGVGSAEATIPASASDAERMADRKVTV 473 >gi|148555047|ref|YP_001262629.1| peptidoglycan-associated lipoprotein [Sphingomonas wittichii RW1] gi|148500237|gb|ABQ68491.1| Peptidoglycan-associated lipoprotein [Sphingomonas wittichii RW1] Length = 175 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + E +L + LA V +++ GH D R N L RA +A Sbjct: 73 FATDAYDVDAEDQAILTRQASWLAKYPNVSVTLEGHCDE---RGTREYNLALGERRANAA 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDIL 337 L+ +GVS RIS IS + SD + NRR + I+ Sbjct: 130 KNFLVSAGVSASRISVISYGKERPVATGSDEAAWAQNRRAVTIV 173 >gi|320577120|gb|ADW54069.1| outer membrane protein A [Sodalis glossinidius] Length = 290 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 7/96 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + PE L ++ L+ + + G+TD N +LS Sbjct: 182 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 238 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 +RA S L+ G+ D+IS G + Sbjct: 239 QERAQSVVSYLVSKGIPSDKISA-RGMGKSNPVTGN 273 >gi|315635693|ref|ZP_07890956.1| chemotaxis protein MotB [Arcobacter butzleri JV22] gi|315479990|gb|EFU70660.1| chemotaxis protein MotB [Arcobacter butzleri JV22] Length = 329 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 130/335 (38%), Gaps = 55/335 (16%) Query: 33 WKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER 92 W I YAD M L F+ + +I A + +Y Q+ E Sbjct: 13 W-ISYADLMAGL--LFVFILVIGAI-------VIKY---------------VYAQSSLES 47 Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 S + K L + TKN + ++ K L+ + + E+ NS + Sbjct: 48 SEEAKSQLFYELAKTKNLYESTKDELDKAKNQINLKLSEIEKLKALLLEYELNSKDEKDK 107 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQ--DLAKKISSTLSGL---- 206 K + ++ I+ +++ K +L +K ++ D+AK TL+G+ Sbjct: 108 NEKLALELSEKTNLISLKDDELKLLADKLLVLTQVHQKMVEEFDIAKLKIKTLTGIKLNV 167 Query: 207 ---VADNIVKGVLFETTRTGILIS---IIDQRNTPMFDKS----SSIPLPETIVVLQKIG 256 + + + K + + I S + DQ + + ++S S++ +L Sbjct: 168 ISKLREKLGKSINIDEKSGAIKFSSNILFDQNSYILKEESKKELSTVLKQYLNTLLDD-- 225 Query: 257 EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI---- 312 + + E I+I GHT++ N +LS RA + Q L +S + + ++ Sbjct: 226 KEIKKYIESITIEGHTNSD---GTYLSNLQLSQQRALAVMQFLYESNIIDKKLLGTYVNS 282 Query: 313 SGFAHHRLKIAS--DPMNSANRRIDI--LVEDRQG 343 SG + L + + +++ RRI+I +++ + Sbjct: 283 SGRSSSDLILKDGVEDKDAS-RRIEIKFTIKNEEA 316 >gi|260555968|ref|ZP_05828188.1| small protein A [Acinetobacter baumannii ATCC 19606] gi|260410879|gb|EEX04177.1| small protein A [Acinetobacter baumannii ATCC 19606] Length = 259 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 14/110 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD+ + + E + KI E + S I + G TD P + N LS RA + Sbjct: 152 FDRFDASAIEEGTNSVVKIAEQIKKSPTTTPIIVSGFTD--PLGKFSY-NQELSSKRANT 208 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDI 336 ++L++ GV RI +I + L N + NRR++I Sbjct: 209 VAKLLVRQGVEPSRI-QIQANSQTDLYKQCSDNNSSQLIQCLAPNRRVNI 257 >gi|163815615|ref|ZP_02206988.1| hypothetical protein COPEUT_01790 [Coprococcus eutactus ATCC 27759] gi|158449252|gb|EDP26247.1| hypothetical protein COPEUT_01790 [Coprococcus eutactus ATCC 27759] Length = 251 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 33/198 (16%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 ++ L ++K + ++K L + K++ + ++VK + E + + + Sbjct: 40 QSKRQYESKQEQLDEQKKIIADQEKMLGEQQKELDRIAG--IRSDLVKALRDEFSGSSLN 97 Query: 226 ISIIDQRNT------PMFDKSSSIPLPETIVVLQKIGE----VL-----AHSTEVISIRG 270 + I ++ +FD S S + + + VL I I G Sbjct: 98 VKIDEKTGAITFDAGVLFDVSDSELKEDGKKFINQFLPKYCSVLLSDDYRDYVSEIIIEG 157 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGV----SEDRISKI---SGFAHHRLK 321 HTD + N LS RA+S + +G+ E+++ + +G ++ Sbjct: 158 HTDTN---GSYIYNLELSQQRAFSVARYCLTESNGIISSGQEEQLRTVLTANGKSYSNPI 214 Query: 322 IASD---PMNSANRRIDI 336 D M+++ RR++I Sbjct: 215 YGDDGEVDMDAS-RRVEI 231 >gi|213620924|ref|ZP_03373707.1| hypothetical protein SentesTyp_26862 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 67 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%) Query: 276 PFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANR 332 P + N LS RA +L GV R+ I G + + NR Sbjct: 1 PIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVH-IVGKGDTVPVADNGSKAGRAKNR 59 Query: 333 RIDILVED 340 R++ILV + Sbjct: 60 RVEILVVE 67 >gi|85860625|ref|YP_462827.1| outer membrane protein [Syntrophus aciditrophicus SB] gi|85723716|gb|ABC78659.1| outer membrane protein [Syntrophus aciditrophicus SB] Length = 204 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S ++ VL E ++ +E IS+ GHTD N+ LS RA S Sbjct: 103 FKTNSFELNIPSLKVLNSAHEAISSRQSEDISVIGHTDRV---GTDEKNYILSRKRALSV 159 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + L+ GV D I + + + NRR++++V Sbjct: 160 KKYLVVKGVHPDAIE-LDYHGEANPLVKTAEGVAEPRNRRVEVIV 203 >gi|330896311|gb|EGH28406.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 384 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 218 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 273 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 274 RALNRRVEILMTPQ 287 >gi|323963914|gb|EGB59407.1| OmpA family protein [Escherichia coli M863] Length = 160 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G R G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAMGGQIPRRNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|315058013|gb|ADT72342.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni S3] Length = 317 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 118/328 (35%), Gaps = 66/328 (20%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ Q + ++T Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + KDL + D + +K+ L L K+ ++ Q +K+ + GL+ Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156 Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256 +N++K + + I+I ++ + +FDK S + E L+KI Sbjct: 157 ENLIKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213 Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309 ++ ++ I I GHTD+ N LS RAY + S+ ++ Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269 Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + +RRI+I Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297 >gi|290957838|ref|YP_003489020.1| hypothetical protein SCAB_33721 [Streptomyces scabiei 87.22] gi|260647364|emb|CBG70469.1| putative secreted protein [Streptomyces scabiei 87.22] Length = 206 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 20/217 (9%) Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 L+ + + S E + P L + Sbjct: 2 TMTAPTPRTTVLAGAVAVLAALTLAAPAHAADDPSEPPGTVTTSPPPEVDANSPALKLAQ 61 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSS 242 + K L I S + L + + T + +F K+S+ Sbjct: 62 GATLAPAKVLD-----IKSVVEDLGGEERREDTNENVT--------FALQAEVLFPKNSA 108 Query: 243 IPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 P+ +Q I E + + + G TD LS RA + + +L Sbjct: 109 KLNPQARSRIQTIAEEIKKQDAVKVRVFGFTDNL---GSYAHGLTLSKKRAEAVHDLLAT 165 Query: 302 SGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 + + ++ G++ A++ NRR+++ Sbjct: 166 D-LDGNVTFEVRGYSEDYPIADNATEEGRKKNRRVEV 201 >gi|229523201|ref|ZP_04412608.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae TM 11079-80] gi|229339564|gb|EEO04579.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae TM 11079-80] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++ + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIDDNASPIGKDKNRRVVISLGRTQ 293 >gi|255037333|ref|YP_003087954.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950089|gb|ACT94789.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 366 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 7/116 (6%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 I T F +S ++ L + + + + I GHTD N Sbjct: 249 ISASDKTLYFPRSDYKLPMQSRTYLDSVAMYILENKNKGLRITGHTDNV---GNPSLNLT 305 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVED 340 LS R + L+ GV E I+ + G +D NRR+++ + D Sbjct: 306 LSEYRVRVISRYLIGKGVPEGVIAAV-GVGSRFPVRPNDSEENRRMNRRVEVQIID 360 >gi|283850887|ref|ZP_06368173.1| peptidoglycan-associated lipoprotein [Desulfovibrio sp. FW1012B] gi|283573810|gb|EFC21784.1| peptidoglycan-associated lipoprotein [Desulfovibrio sp. FW1012B] Length = 171 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS PE +L + +++ + + + G+ D R A N L RA +A Sbjct: 69 FAFDSSNLTPEARQILTRKADIMKQYPQIKVIVEGNCDQ---RGTAEYNLALGERRAQAA 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 Q L G+ DR+S +S + R + + NRR Sbjct: 126 AQYLSNLGIPADRLSTVS-YGKERPLDPGTGEAAYAKNRR 164 >gi|255602974|ref|XP_002537961.1| Outer membrane protein A precursor, putative [Ricinus communis] gi|223514409|gb|EEF24422.1| Outer membrane protein A precursor, putative [Ricinus communis] Length = 295 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S+ P L I VL +++ + + I G+ D + N +LS RA Sbjct: 213 LFSFDSAKLNPN-QPKLDDIANVLNNNSSIDNVVITGYADRL---GSEKYNQKLSERRAN 268 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLK 321 S + L+ GVS +R++ + G Sbjct: 269 SVKEYLVSKGVSANRLNAV-GKGESNPV 295 >gi|30250467|ref|NP_842537.1| outer membrane protein [Nitrosomonas europaea ATCC 19718] gi|30139308|emb|CAD86460.1| Bacterial outer membrane protein [Nitrosomonas europaea ATCC 19718] Length = 231 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 22/118 (18%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P L L + I G+TD + A N LS+ RA + Sbjct: 113 LFDFDKAVLKPAGKQALDDFAANLEGVNYDLIIAVGYTD--RIGSEAY-NKNLSIKRAEA 169 Query: 295 AYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRIDILV 338 L+ G+ DRI ++G A L P RR++I V Sbjct: 170 VKSYLVSKGIGSDRIFTDGKGEANPVTGDSCHGTKATRALIDCLAPD----RRVEIEV 223 >gi|332293247|ref|YP_004431856.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171333|gb|AEE20588.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 275 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 13/114 (11%) Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR------- 286 F + L + V+ L+K+ L I I GH SP R D + Sbjct: 166 FFKGGTDKMLGSSSVITLRKVVRFLEGYPTRKILITGHICCSPDREPQLDGYNNRTGSMT 225 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 LS DR Y L+K+G+S R+ K G A+ + NRR+++ + + Sbjct: 226 LSEDRGKMVYDYLIKNGISAGRL-KYRGKAYTEPLDWEET---KNRRVEMTILE 275 >gi|189463696|ref|ZP_03012481.1| hypothetical protein BACINT_00027 [Bacteroides intestinalis DSM 17393] gi|189438646|gb|EDV07631.1| hypothetical protein BACINT_00027 [Bacteroides intestinalis DSM 17393] Length = 397 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 7/136 (5%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID-QRNTP 235 P +I + +L + + + + L+ + E T T +++ D T Sbjct: 240 PQLISQIELAAMQDKLAAMGAQNAQLKNALI--QAQNQPVAEVTETEVIVPDPDIAPRTV 297 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ P I+ L + E + V ++ G+ D++ N LSL RA + Sbjct: 298 FFTIGSAELSPREIMNLSYLAEQMKQFPNVTYTVNGYADSATGTPAF--NKELSLKRAQA 355 Query: 295 AYQVLMKS-GVSEDRI 309 L+K+ G++ DR+ Sbjct: 356 VKDALVKNYGIAADRL 371 >gi|297538146|ref|YP_003673915.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297257493|gb|ADI29338.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 378 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F + +L + + E + + GHTD + A N +LS RA Sbjct: 261 LFGFDKAKLQDGAKPILDDTVAKIKANPELKTVIVTGHTD--RIGSTAY-NQKLSEKRAS 317 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--------NSANRRIDI 336 + L+ GV I+ + G A + + NRR+ I Sbjct: 318 IVKEYLVSQGVDAGIITSV-GKGESEPVEACKGVTGKKLISCLAPNRRVVI 367 >gi|295677286|ref|YP_003605810.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] gi|295437129|gb|ADG16299.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1002] Length = 215 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD +I P L ++ + + + GHTD + A ++ RLSL Sbjct: 97 QADALFDFDKAILKPAGKERLSELASKIQGINLEVVVATGHTD--RIGSDAYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ GV +RI G N N RR+++ V Sbjct: 154 RAQAVKAFLVSKGVEANRIY-TEGKGRRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|254506228|ref|ZP_05118371.1| outer membrane protein [Vibrio parahaemolyticus 16] gi|219550708|gb|EED27690.1| outer membrane protein [Vibrio parahaemolyticus 16] Length = 203 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S + P + ++++ + L + ++G+ AS N LS RA + Sbjct: 83 LFANDSDVVQPIFMTQIRELADFLEEYPSTTVELQGY--ASKVGRPDY-NLELSKRRAEA 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDRQG 343 +L+ + DR++ I GF L + D ++ NR++ V +G Sbjct: 140 VENLLLDYQLDADRVT-IVGFGDTNLSVEGDDEQAHAQNRKVVASVIGHKG 189 >gi|258621333|ref|ZP_05716367.1| Outer membrane protein [Vibrio mimicus VM573] gi|258586721|gb|EEW11436.1| Outer membrane protein [Vibrio mimicus VM573] Length = 278 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 24/198 (12%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 LEK L + ++KRL L +++ S F + Sbjct: 83 QALEKQNRIARQLDGGLLLDAANDLVIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142 Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274 +S+I++ N + F +S+ P+ + L + L A +S+ GH D+ Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKARQDLTLSVTGHADS 197 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 A N +L++ RA + L G++ +RI+ S + NR Sbjct: 198 ---SGNAEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253 Query: 333 RIDILV-------EDRQG 343 R+ I + +QG Sbjct: 254 RVSIEIITADSPNLSKQG 271 >gi|258545746|ref|ZP_05705980.1| peptidoglycan-associated lipoprotein [Cardiobacterium hominis ATCC 15826] gi|258518991|gb|EEV87850.1| peptidoglycan-associated lipoprotein [Cardiobacterium hominis ATCC 15826] Length = 189 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 D+ F SS + V+++ + L + + + GHTD R N L Sbjct: 82 DKDRIIYFSYDSSAIDSRSEAVIREHAKYLRAHPQTRVVLEGHTDE---RGTREYNIGLG 138 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 RAYS + + +G+S ++ ++ + R +S+ + NRR I+ Sbjct: 139 ERRAYSVKERFVAAGISPQQM-RVLSYGEERPAAFGSSEEDYAKNRRAVIV 188 >gi|42528870|gb|AAS18468.1| outer membrane protein A [Salmonella enterica subsp. enterica serovar Gallinarum] Length = 319 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%) Query: 241 SSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 S PE L ++ L++ + + G TD + A N LS RA S Sbjct: 206 KSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLSEKRAQSVVD 262 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDILVE 339 L+ G+ D+IS G + P + +RR++I V+ Sbjct: 263 YLISKGIPSDKISA-RGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVK 314 >gi|88658586|ref|YP_507279.1| OmpA family protein [Ehrlichia chaffeensis str. Arkansas] gi|88600043|gb|ABD45512.1| OmpA family protein [Ehrlichia chaffeensis str. Arkansas] Length = 175 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +L+K+ + + I I GHTD R N L RA + Sbjct: 46 FGFGKATIEDSDKTILEKVMQKAEEYPDTNIIIVGHTDT---RGTDEYNLELGKQRANAV 102 Query: 296 YQ-VLMKSGVSEDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340 +L ++ EDRI + G + + + +++P + NRR+ I + D Sbjct: 103 KDFILERNKSLEDRIIIESKGKSEPAVLVYSNNPEEAEYAHTKNRRVVITLTD 155 >gi|154245935|ref|YP_001416893.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160020|gb|ABS67236.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2] Length = 220 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD +S++ PE+ L I + + + + G+TDA+ R + N +LS +R+ Sbjct: 109 FDLNSAMIKPESYRTLGSIADAMHNPVLLGYKFLVVGNTDATGTREL---NMKLSQERSD 165 Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + + L V R+ + G L+ P + NRR+ I Sbjct: 166 AVVEALSTTFRVDPRRLQSV-GLGEEALQDPKHPDAAINRRVQI 208 >gi|148265117|ref|YP_001231823.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146398617|gb|ABQ27250.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 1700 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 71/207 (34%), Gaps = 30/207 (14%) Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 +E + + ++ S + ++ ++ P L + A + R + + Sbjct: 24 AETAPAETVKTAAGTREAAASGETTETHLPKDQALTPWLLDPSVFAEDQGDRTEK-RRVA 82 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE-V 258 + + N+V + F + E + +L+ + E + Sbjct: 83 EKEVKTIKLANVVPPIR--------------------FRTGEADIPDEYVALLRGVLEKM 122 Query: 259 LAHSTEVISIRGHTD----ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKIS 313 + GH D + P + DN LS +RA + + ++ G+ + I Sbjct: 123 RGRLNVRLHFVGHADPQSLSDPLKAKYGDNTGLSRERAGTTAEYCQRALGLPPEAI-SYE 181 Query: 314 GFAHHRLK--IASDPMNSANRRIDILV 338 G + A++ + NRR+++ V Sbjct: 182 GVGESKPVAGNATEDGRALNRRVEVEV 208 >gi|68171722|ref|ZP_00545076.1| OmpA/MotB [Ehrlichia chaffeensis str. Sapulpa] gi|67998855|gb|EAM85553.1| OmpA/MotB [Ehrlichia chaffeensis str. Sapulpa] Length = 175 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +L+K+ + + I I GHTD R N L RA + Sbjct: 46 FGFGKATIEDSDKTILEKVMQKAEEYPDTNIIIVGHTDT---RGTDEYNLELGKQRANAV 102 Query: 296 YQ-VLMKSGVSEDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340 +L ++ EDRI + G + + + +++P + NRR+ I + D Sbjct: 103 KDFILERNKSLEDRIIIESKGKSEPAVLVYSNNPEEAEYAHTKNRRVVITLTD 155 >gi|285019182|ref|YP_003376893.1| pal family outer membrane lipoprotein [Xanthomonas albilineans GPE PC73] gi|283474400|emb|CBA16901.1| probable pal family outer membrane lipoprotein [Xanthomonas albilineans] Length = 172 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L I+++G+TD R N L RA S Sbjct: 69 FDLDKDTVKPEFQAIMACHAKYLRDRPSSRITLQGNTDE---RGSREYNMGLGERRANSV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDIL 337 + L +G S +++ +S F +++ S NRR++I+ Sbjct: 126 FSALQANGGSAAQLTVVS-FGEEHPVCTESNESCWSQNRRVEIV 168 >gi|154508361|ref|ZP_02044003.1| hypothetical protein ACTODO_00858 [Actinomyces odontolyticus ATCC 17982] gi|153797995|gb|EDN80415.1| hypothetical protein ACTODO_00858 [Actinomyces odontolyticus ATCC 17982] Length = 177 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S VL + E +S+ GHTD+ N LS RA + Sbjct: 76 FEVDSDQLTARAKEVLDSLASEWTKAKPSTVSVMGHTDSVA---DDAHNLDLSKRRAKAV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L K V I+ G +D + NRR++I Sbjct: 133 GDYL-KGKVPGLSIT-TDGKGEAEPIGDNETDEGRAQNRRVEI 173 >gi|303245612|ref|ZP_07331895.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] gi|302492875|gb|EFL52740.1| OmpA/MotB domain protein [Desulfovibrio fructosovorans JJ] Length = 345 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE + VL++ ++ + + G+TD+ N +L RA S Sbjct: 242 FDFDKYNIKPEFVPVLEEGTAIIKSKPTMKVILEGNTDS--IGTPQY-NMKLGQRRADSV 298 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 +K G+ RI IS G + + NRR I Sbjct: 299 KAFFVKKGIDASRIEAISLGLTDPVATNKTAQGRALNRRCVI 340 >gi|296113590|ref|YP_003627528.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis RH4] gi|295921284|gb|ADG61635.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis RH4] Length = 171 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ +L + + L + T + + GHTD R N L RA + Sbjct: 71 FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 127 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L+ G+++ + IS F R ++ S NRR ++ Sbjct: 128 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 169 >gi|156977089|ref|YP_001447995.1| hypothetical protein VIBHAR_05874 [Vibrio harveyi ATCC BAA-1116] gi|156528683|gb|ABU73768.1| hypothetical protein VIBHAR_05874 [Vibrio harveyi ATCC BAA-1116] Length = 1211 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 22/201 (10%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + DL I + + + +++ Q+ ++ + + L + Sbjct: 186 SGSQAAQGSAHGDLLSKIQEYMATTASVQADKAQAFQGTEEKYQNAVNQLRNEMPDLFVE 245 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---TEVI 266 + + +++ F+ S + V ++I E L I Sbjct: 246 EGSVSLDQRVEDVLLRLNMT------FFEFDSYQVTEKG-SVHKRIAEQLQALISNPFEI 298 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-----ISKIS--GFAHHR 319 I GHT N LS RA S + ++ + + R + KI G+A Sbjct: 299 VITGHTCNM---GSEAYNLALSEKRAVSVKEAILDAMSPDARSVWSPLFKIVAKGYAVSL 355 Query: 320 LKIASDP--MNSANRRIDILV 338 + NRR++I + Sbjct: 356 PGNTNRTIEERVKNRRVEIYL 376 >gi|254490152|ref|ZP_05103343.1| peptidoglycan-associated lipoprotein, putative [Methylophaga thiooxidans DMS010] gi|224464638|gb|EEF80896.1| peptidoglycan-associated lipoprotein, putative [Methylophaga thiooxydans DMS010] Length = 188 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ E LQ LA + + GHTD R N L RA S Sbjct: 85 FEYDSATVRVEDQETLQAHAAYLAKKPNLTLRLEGHTDE---RGAREYNLALGERRALSI 141 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 Q+LM G S ++ +++ F R + NRR++++ Sbjct: 142 RQILMLQGASINQF-QVTSFGEERPAEEGSSEYAWSQNRRVELV 184 >gi|94987344|ref|YP_595277.1| outer membrane protein [Lawsonia intracellularis PHE/MN1-00] gi|94731593|emb|CAJ54956.1| outer membrane protein [Lawsonia intracellularis PHE/MN1-00] Length = 340 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S +L++ ++ + + + + G TD++ N RLS +RA + Sbjct: 239 FAFDSFALDDTAKAILEETVRLIRANPDFNVRLLGWTDST---GPDAYNLRLSQERADAV 295 Query: 296 YQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDIL 337 L+K G+ +R+ G ++ A+ NRR +++ Sbjct: 296 KNFLVKMGIPSNRLFA-KGMGKSYQYNNATKEGRYMNRRTELV 337 >gi|84687704|ref|ZP_01015577.1| OmpA/MotB family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664287|gb|EAQ10778.1| OmpA/MotB family protein [Rhodobacterales bacterium HTCC2654] Length = 165 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S P+ +L + + L +T I GH D N L R Sbjct: 55 DRVLFMVDQSTLSPQAQGILDQQAQWLNSNTAYSAIIEGHADEQ---GTREYNVALGARR 111 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANRR 333 A S L++ GV+ R+ +S L I SD NRR Sbjct: 112 ASSVQSYLIERGVAPGRLKTVSYGKERPLAICSDESCYQQNRR 154 >gi|295395658|ref|ZP_06805850.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971474|gb|EFG47357.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 607 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 21/114 (18%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S ++ I L + + ++I GHTD + N LS RA Sbjct: 295 LFDFDSDKVKDSDSKLIDGIANELKKSAAGQKVTIEGHTDDE---GDEKYNVDLSNRRAE 351 Query: 294 SAYQVLM----KSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335 S +VL SG+S + GF + + + + NRR+ Sbjct: 352 SVKKVLEPKVKGSGIS----FETKGFGESQPILPNRTAGGDAIKKNQAKNRRVS 401 >gi|294787834|ref|ZP_06753078.1| OmpA family protein [Simonsiella muelleri ATCC 29453] gi|294484127|gb|EFG31810.1| OmpA family protein [Simonsiella muelleri ATCC 29453] Length = 229 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 5/96 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNW 285 +I ++ +F S E + L + L + + + GHTD F N Sbjct: 82 EVISFQSNFLFGFDKSTLRSEAVAKLNETAAKLRGTEVQSVRVEGHTD---FMGKDTYNQ 138 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 LS RA L GV +IS + G+ + + Sbjct: 139 ALSERRANVVANYLANQGVPAGKISAV-GYGESQAR 173 >gi|222149664|ref|YP_002550621.1| peptidoglycan-associated lipoprotein [Agrobacterium vitis S4] gi|221736646|gb|ACM37609.1| peptidoglycan-associated lipoprotein [Agrobacterium vitis S4] Length = 177 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD S+ + L + + L + I++ GH D R N L R Sbjct: 68 DRIFFDTDSTSIRADAQQTLDRQAQWLQRYSQYPITVEGHADE---RGTREYNLALGARR 124 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L+ G+ +RI IS + R D ++ S NRR Sbjct: 125 AASTKAYLVSRGIPANRIKTIS-YGKERPVATCDDISCWSQNRR 167 >gi|110086793|gb|ABG49460.1| hemagglutinin antigen [Avibacterium paragallinarum] Length = 345 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 232 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 288 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 289 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 342 >gi|37704672|gb|AAR01608.1| OprF [Pseudomonas sp. MFY245] Length = 314 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + ++ + + + + + GHTD+ N +LS RA + Sbjct: 231 FDFDKSVVKENSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 287 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 288 KQVLTNQYGVESSRVQSV-GYGESRPVA 314 >gi|229525621|ref|ZP_04415026.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae bv. albensis VL426] gi|297578614|ref|ZP_06940542.1| sodium-type flagellar protein MotY [Vibrio cholerae RC385] gi|229339202|gb|EEO04219.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae bv. albensis VL426] gi|297536208|gb|EFH75041.1| sodium-type flagellar protein MotY [Vibrio cholerae RC385] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++ + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|103485733|ref|YP_615294.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] gi|98975810|gb|ABF51961.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] Length = 170 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 8/124 (6%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFR 278 T + + +F + S E ++ I L + GHTD++ Sbjct: 47 VETALGWELS-MPERLLFPTNESAVPAEQQERMRAIAMRLVSVGITTARVEGHTDST--- 102 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + N LS RA + + G++ +I G +D NRR+ + Sbjct: 103 GSSAYNLTLSRARAEAVAAPMRAGGMTFT-ADQIVGRGETLPLSGNDTAEGRQDNRRVVV 161 Query: 337 LVED 340 +V Sbjct: 162 IVTP 165 >gi|296313331|ref|ZP_06863272.1| OmpA family protein [Neisseria polysaccharea ATCC 43768] gi|296840145|gb|EFH24083.1| OmpA family protein [Neisseria polysaccharea ATCC 43768] Length = 231 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F + E L+ + + L + + + GHTD F + N LS RA Sbjct: 93 LFGFDKDVLRAEAQDNLKVLAQRLGQTNVQSVRVEGHTD---FMGSEKYNQTLSERRANV 149 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV + S + G + Sbjct: 150 VANYLVSNGVPASKTSAV-GLGESQ 173 >gi|238754341|ref|ZP_04615697.1| Outer membrane protein A [Yersinia ruckeri ATCC 29473] gi|238707374|gb|EEP99735.1| Outer membrane protein A [Yersinia ruckeri ATCC 29473] Length = 355 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L+ + + G D A N +LS Sbjct: 227 KSDVLFAFNKATLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQAAPNLKLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 +RA S + L+ G+ D+IS G + P + +RR++I Sbjct: 284 ENRARSVVEYLVAKGIPADKISA-RGMGQADPVTGNTCDNVKPRAALIECLAPDRRVEIE 342 Query: 338 VE 339 V+ Sbjct: 343 VK 344 >gi|153829514|ref|ZP_01982181.1| sodium-type flagellar protein MotY [Vibrio cholerae 623-39] gi|148874974|gb|EDL73109.1| sodium-type flagellar protein MotY [Vibrio cholerae 623-39] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++ + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|327405082|ref|YP_004345920.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320590|gb|AEA45082.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 694 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S P + VL K+ E L + V+ I HTDA R N LS RA S L Sbjct: 566 SDKLRPASEAVLDKLLEFLELNNNIVVEINSHTDA---RGKDIYNLDLSQRRAKSCVDYL 622 Query: 300 MKSGVSEDRISKISGFAHHRL 320 + G++ +R+ G+ + Sbjct: 623 VSKGITPERLIA-KGYGETQP 642 >gi|323138982|ref|ZP_08074042.1| peptidoglycan-associated lipoprotein [Methylocystis sp. ATCC 49242] gi|322395736|gb|EFX98277.1| peptidoglycan-associated lipoprotein [Methylocystis sp. ATCC 49242] Length = 179 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ S+ L K E L ++ GH D R N+ L R Sbjct: 70 DRIFFETDSTDLTSTAQATLDKQAEWLNRYGRYSFTVEGHADE---RGTREYNFALGARR 126 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A L+ GVS RI +S + R D ++ S NRR Sbjct: 127 AEVTKNYLISKGVSGSRIRTVS-YGKERPVAVCDDISCWSQNRR 169 >gi|260779363|ref|ZP_05888255.1| sodium-type flagellar protein MotY precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260605527|gb|EEX31822.1| sodium-type flagellar protein MotY precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 293 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D+SS + L +I E + H+ ++ + + +T ++ +++ LS RA Sbjct: 187 YDRSSVQLNKASQKRLAQIAEYIRHNQDIDLVLVSTYTSNEESKSASQN---LSEQRAEV 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 244 LRDYFKSLGLPEDRI-QVQGYGRRRPVADNASPLGKDKNRRVVISLGRTQ 292 >gi|213963879|ref|ZP_03392126.1| immunogenic 75 kDa protein PG4 [Capnocytophaga sputigena Capno] gi|213953469|gb|EEB64804.1| immunogenic 75 kDa protein PG4 [Capnocytophaga sputigena Capno] Length = 658 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + L KI ++ + +R HTD+ R + N LS RA S Sbjct: 550 FDYDKANIRKDAAEQLAKIVAIMKEYPTMKVDVRLHTDS---RGSDKYNLALSERRAKST 606 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 + ++ G+ ++RI+ G+ +L ++ + ANRR + ++ Sbjct: 607 IKWIVSHGIKKNRITG-KGYGETQLVNGCSNGVPCTEEEHQANRRSEFII 655 >gi|332292047|ref|YP_004430656.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170133|gb|AEE19388.1| OmpA/MotB domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 650 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 99/263 (37%), Gaps = 24/263 (9%) Query: 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQS--------EHCKNSL 147 I+ S D+ + D ++G ++ ++I+ + K+S Sbjct: 388 EPINSSFDDFTFILNEDTQVGYFASNRKRGMGSDDIYKFLKEEIPCDIKLVGVVTDKDSG 447 Query: 148 TRDSEKGKDL--CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST--L 203 E L + +E + + ++ K A+ I++T + Sbjct: 448 NPIPEATVQLINSEGVVVEAVQATNMGTYAFEATCVTQYVVRASKEEYTTAEAITTTPDI 507 Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +G +A+++V +L + G ++ + + N FD P+ + L+K+ V+ Sbjct: 508 TGTLANDLVLSLLQKPINIGDDLAKVLELNPIYFDFDRFNIRPDAALELEKVIAVMREYP 567 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI 322 V+ R HTD+ R N LS RA + ++ G+S RIS G+ + Sbjct: 568 NLVLDARSHTDS---RGKDSYNLSLSDKRAKATVAYIINQGISSSRISG-QGYGEKQPVN 623 Query: 323 A-------SDPMNSANRRIDILV 338 S+ + NRR + +V Sbjct: 624 TCSNGVNCSEEEHQLNRRSEFIV 646 >gi|258622021|ref|ZP_05717050.1| sodium-type flagellar protein MotY [Vibrio mimicus VM573] gi|258627110|ref|ZP_05721906.1| sodium-type flagellar protein MotY [Vibrio mimicus VM603] gi|262165241|ref|ZP_06032978.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus VM223] gi|258580628|gb|EEW05581.1| sodium-type flagellar protein MotY [Vibrio mimicus VM603] gi|258585774|gb|EEW10494.1| sodium-type flagellar protein MotY [Vibrio mimicus VM573] gi|262024957|gb|EEY43625.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus VM223] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++++ + + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|212693934|ref|ZP_03302062.1| hypothetical protein BACDOR_03458 [Bacteroides dorei DSM 17855] gi|237723935|ref|ZP_04554416.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265751214|ref|ZP_06087277.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212663466|gb|EEB24040.1| hypothetical protein BACDOR_03458 [Bacteroides dorei DSM 17855] gi|229437761|gb|EEO47838.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|263238110|gb|EEZ23560.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 401 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEV-LAHSTEVISIRGHTDASPFRNIARDNWR 286 + D N F+ + P+ ++ +I ++ L +++ I G TDA + ++ N Sbjct: 280 LCDLFNNIYFEFDKTEITPKAATIIDEIAQIMLTDTSKKYLITGCTDA---KGSSQYNME 336 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 LS RA + L+K GV +++ K G + + N Sbjct: 337 LSQKRADAVVNALIKKGV-PNKMLKAKGVGAKISYASQNAPN 377 >gi|26987864|ref|NP_743289.1| OmpA/MotB domain protein [Pseudomonas putida KT2440] gi|24982567|gb|AAN66753.1|AE016303_8 OmpA family protein [Pseudomonas putida KT2440] Length = 344 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 16/213 (7%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+ + K+++T + K +S+ ++ KI + Sbjct: 55 PFGSDKVAEQEVKSAVTENVAKADAKSESSSRWWWPFGGDDKQAKGPVVPKIDQKATQAW 114 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + K+ + + + + T + + + P ++ LP ++ Sbjct: 115 LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 165 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + ++ + + + + + GH D+ A N +LSL+RA S + SG+ DR++ Sbjct: 166 ITRVAKTVEGDPKTAVLVLGHADS---SGAAVANQKLSLERAASVSAIFRLSGLQRDRLT 222 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + G + A+D + NRR+++L+ + Sbjct: 223 -LKGMGSVMPRAANDSAEGRALNRRVEMLLTPQ 254 >gi|15641023|ref|NP_230654.1| sodium-type flagellar protein MotY [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081182|ref|YP_002809733.1| sodium-type flagellar protein MotY [Vibrio cholerae M66-2] gi|229505393|ref|ZP_04394903.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae BX 330286] gi|229510937|ref|ZP_04400416.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae B33] gi|229518058|ref|ZP_04407502.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae RC9] gi|229608412|ref|YP_002879060.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae MJ-1236] gi|254848138|ref|ZP_05237488.1| sodium-type flagellar protein MotY [Vibrio cholerae MO10] gi|255744790|ref|ZP_05418741.1| sodium-type flagellar protein MotY precursor [Vibrio cholera CIRS 101] gi|298498879|ref|ZP_07008686.1| sodium-type flagellar protein MotY [Vibrio cholerae MAK 757] gi|9655471|gb|AAF94169.1| sodium-type flagellar protein MotY [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009070|gb|ACP05282.1| sodium-type flagellar protein MotY [Vibrio cholerae M66-2] gi|229344773|gb|EEO09747.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae RC9] gi|229350902|gb|EEO15843.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae B33] gi|229357616|gb|EEO22533.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae BX 330286] gi|229371067|gb|ACQ61490.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae MJ-1236] gi|254843843|gb|EET22257.1| sodium-type flagellar protein MotY [Vibrio cholerae MO10] gi|255737821|gb|EET93215.1| sodium-type flagellar protein MotY precursor [Vibrio cholera CIRS 101] gi|297543212|gb|EFH79262.1| sodium-type flagellar protein MotY [Vibrio cholerae MAK 757] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++ + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|19881369|gb|AAM00927.1|AF491819_1 hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341 >gi|109896581|ref|YP_659836.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] gi|109698862|gb|ABG38782.1| OmpA/MotB [Pseudoalteromonas atlantica T6c] Length = 368 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 +++ +F +S+ ++ + I G+ AS + W L Sbjct: 249 VEETLRILFANNSAEIANRANSDIRDFAAFMKRFPSTDTVIEGY--ASAPGESDYNQW-L 305 Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 S +RA + VL++ + RI+ + GF +L A + NRRI Sbjct: 306 SEERAKAVRMVLIEDYDIKPARITAV-GFGESKLLDAPTAKEANKINRRI 354 >gi|147674163|ref|YP_001216480.1| sodium-type flagellar protein MotY [Vibrio cholerae O395] gi|229529898|ref|ZP_04419288.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae 12129(1)] gi|146316046|gb|ABQ20585.1| sodium-type flagellar protein MotY [Vibrio cholerae O395] gi|227012825|gb|ACP09035.1| sodium-type flagellar protein MotY [Vibrio cholerae O395] gi|229333672|gb|EEN99158.1| sodium-type flagellar protein MotY precursor [Vibrio cholerae 12129(1)] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++ + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQN---LSEQRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|326572627|gb|EGE22616.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis CO72] Length = 186 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ +L + + L + T + + GHTD R N L RA + Sbjct: 86 FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 142 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L+ G+++ + IS F R ++ S NRR ++ Sbjct: 143 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 184 >gi|167563638|ref|ZP_02356554.1| ompA family protein [Burkholderia oklahomensis EO147] Length = 209 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 86 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G + + N RR+++ V Q Sbjct: 143 VKSYLVSKGVPANKVY-TEGKGKRNP-VTGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 199 >gi|288225941|gb|ADC44455.1| OmpA [Candidatus Erwinia dacicola] gi|288225945|gb|ADC44457.1| OmpA [Candidatus Erwinia dacicola] Length = 324 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + N +LS Sbjct: 196 KSDVLFNFNKNTLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 252 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDIL 337 RA S L+ G+ +I G I S D + N RR++I Sbjct: 253 EKRAQSVVDHLVSKGIPASKIYA-RGKGKSNPIIGSTCDSVKGRNALIDCLAPDRRVEIE 311 Query: 338 VE 339 V+ Sbjct: 312 VK 313 >gi|262402652|ref|ZP_06079213.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC586] gi|262351434|gb|EEZ00567.1| sodium-type flagellar protein MotY precursor [Vibrio sp. RC586] Length = 294 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++++ + + +TD++ N +++ LS RA + Sbjct: 192 SVELNKASQKRLAQIAEYVRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 248 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 249 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 293 >gi|224371704|ref|YP_002605868.1| OmpA3 [Desulfobacterium autotrophicum HRM2] gi|223694421|gb|ACN17704.1| OmpA3 [Desulfobacterium autotrophicum HRM2] Length = 196 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + E++ ++ ++ + + ISI GHTD +N +LSL+RA Sbjct: 95 FNTGDTSLTKESLDLIPEVLNSVKERAPSEISIIGHTDTK--GASVYNN-KLSLERANKV 151 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 +++ + I I + + + NRR++I+V Sbjct: 152 AKIITHIDANLKNIY-IQFHGENDPLVITGDNVSEKRNRRVEIMV 195 >gi|218675048|ref|ZP_03524717.1| OmpA family membrane protein [Rhizobium etli GR56] Length = 500 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ L+K+ + + +E I GHTDA + N LS R Sbjct: 385 FATGSAEIPMTQARTLRKVADAINQVLEKDPSETFLIEGHTDAV---GSDQSNLILSDQR 441 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S VL G++ + + G+ LK+ + NRR+ I Sbjct: 442 AESVANVLTDVYGIAPENL-ATQGYGERYLKVNTSDPEQENRRVTI 486 >gi|59711130|ref|YP_203906.1| outer membrane protein [Vibrio fischeri ES114] gi|59479231|gb|AAW85018.1| outer membrane protein [Vibrio fischeri ES114] Length = 219 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F+ + +LQ + E L + + + GHTD + N L L R+ Sbjct: 111 RVLFNFDQYSLTERSKYILQSVTEKLETQKDTVLLNGHTDN---KGRENYNINLGLARSN 167 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 S L+ G S++++ S F + + + NRR+DI Sbjct: 168 SVKAFLLAQGASKEQLESYS-FGEQQPIDDNTTLEGQHHNRRVDI 211 >gi|260426487|ref|ZP_05780466.1| outer membrane protein, OmpA/MotB family [Citreicella sp. SE45] gi|260420979|gb|EEX14230.1| outer membrane protein, OmpA/MotB family [Citreicella sp. SE45] Length = 695 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 31/250 (12%) Query: 92 RSSQNKIDLSIDEHITKNSVDLKIGSTNQ--KKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 R + D+ T++ V+ G+ + K R+ L + Q ++ Sbjct: 456 RPGSDVTTYRYDDGSTRSVVEYDDGNVVETVKAADGRVLRRTRTLPDGQSIVLFDDTQAE 515 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 DL ++T+ + +N +E + + R + +L+ + Sbjct: 516 TEVVVNDLPQTTETPRRMNFQEVDETELAAALAAESGTSVDR--------TFSLNQIRNI 567 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG----EVLAHSTEV 265 + V+ ++ E + +D N F+ S+ PE L +G +V+A Sbjct: 568 DAVRHLVPEVS--------VDSIN---FETGSAAIRPEEARALAALGNAMKQVIAERPGE 616 Query: 266 I-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIA 323 + I GHTDA + N LS RA S L + V + + + G+ L + Sbjct: 617 VFLIEGHTDA--VGSWTY-NLALSDRRAESVALALTEYFDVPPENMV-LQGYGEGDLAVQ 672 Query: 324 SDPMNSANRR 333 SD NRR Sbjct: 673 SDAAERENRR 682 >gi|226227699|ref|YP_002761805.1| putative outer membrane protein [Gemmatimonas aurantiaca T-27] gi|226090890|dbj|BAH39335.1| putative outer membrane protein [Gemmatimonas aurantiaca T-27] Length = 233 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 16/179 (8%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD--NIVKGVLFETTRTGILISIIDQR-N 233 LS E+ LQ+ + + ++ L D + + T G I+ ++ Sbjct: 47 ALSTERTERTTADNALQNDVRGVRGSVDSLRTDLNALRTDLQTLRTEYGAKITALEGAVK 106 Query: 234 TPM---FDKSSSIPLPETIVVLQKIGEVL-AHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 M F + E L+K +V +H I++ G +D P + A N RLS Sbjct: 107 FAMPVHFGFDDAAVRQEDQAALEKFAQVAQSHYPGATITVEGFSD--PAGSAAY-NLRLS 163 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPMNSANRRIDILVEDRQG 343 +RA + L+ G+ + + G+ RL + NRR+ ++E G Sbjct: 164 RERADAVRDFLVTKGMDGAAL-RTVGYGKARLVRPGAKGDESGAELNRRVTFVIESSGG 221 >gi|58200723|gb|AAW66611.1| hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341 >gi|2499351|sp|Q99124|OMPA_ESCBL RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II gi|146989|gb|AAA24235.1| outer membrane protein II [Escherichia blattae] Length = 241 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G+TD + A N RLS Sbjct: 122 KSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTD--RIGSDAY-NQRLS 178 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 RA S L+ G+ +I+ G + N + +RR++I Sbjct: 179 QQRAQSVVDYLVSKGIPAGKITA-QGQGESNPVTGNTCDNVKKRAALIDCLAPDRRVEIE 237 Query: 338 VE 339 V+ Sbjct: 238 VK 239 >gi|19881365|gb|AAM00925.1|AF491817_1 hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341 >gi|326795240|ref|YP_004313060.1| peptidoglycan-associated lipoprotein [Marinomonas mediterranea MMB-1] gi|326546004|gb|ADZ91224.1| peptidoglycan-associated lipoprotein [Marinomonas mediterranea MMB-1] Length = 200 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 18/182 (9%) Query: 166 SINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL 225 S N E ++++ A + + + S G D + V+ + + + Sbjct: 23 STNATETDSSSTVAEDSASATEEQSADAAGQEAGSDQSFGAGEDGSITSVVVDDSGSA-- 80 Query: 226 ISIIDQRNTPM--------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 S +DQ + FD SI PE L K E L + + + + GH D Sbjct: 81 -SAVDQDVDLLAGVETVFYFDFDKSIVRPEAREALAKHAEFLVANPDARVVLEGHADE-- 137 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRI 334 R N L RA + + L GV+ +I +S F D NRR+ Sbjct: 138 -RGTREYNMALGERRAKAVARYLTIQGVAASQIESVS-FGEEVPVAFGHDDASWQLNRRV 195 Query: 335 DI 336 ++ Sbjct: 196 EV 197 >gi|296103033|ref|YP_003613179.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057492|gb|ADF62230.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 359 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N +LS Sbjct: 231 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQKLS 287 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ ++IS G + D + + +RR++I Sbjct: 288 EKRAQSVVDYLISKGIPANKISP-RGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIE 346 Query: 338 VE 339 V+ Sbjct: 347 VK 348 >gi|227822263|ref|YP_002826234.1| OmpA family protein [Sinorhizobium fredii NGR234] gi|227341263|gb|ACP25481.1| OmpA family protein [Sinorhizobium fredii NGR234] Length = 758 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V + +VL I GHTDA R N LS +R Sbjct: 644 FATGSAEVSMSQAKTLRNVADAMSKVLEKDPGETFFIEGHTDAV---GSDRSNLVLSDER 700 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + GV + + G+ LKI + NRR+ I Sbjct: 701 AESVAVLLTEVYGVPAENLV-TQGYGERFLKIRTPEAEQENRRVTI 745 >gi|223041430|ref|ZP_03611633.1| lipoprotein Plp4 [Actinobacillus minor 202] gi|223017688|gb|EEF16095.1| lipoprotein Plp4 [Actinobacillus minor 202] Length = 294 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 11/106 (10%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD E + + + + L I + G+TD N LS RA + Sbjct: 142 LFDFDKDSLTAEGVRTVNALADKLKSLPVKSIVVEGYTDRM---GTVEYNLDLSQRRANT 198 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-----NRRI 334 L + GV+ + ++ + G A+ + + NRR+ Sbjct: 199 VKAELQRLGVTTE-LNAVGYGKANQVKHCDGNDQAAKDCLRPNRRV 243 >gi|126699538|ref|YP_001088435.1| hypothetical protein CD1929 [Clostridium difficile 630] gi|255306922|ref|ZP_05351093.1| hypothetical protein CdifA_10067 [Clostridium difficile ATCC 43255] gi|115250975|emb|CAJ68804.1| putative membrane protein [Clostridium difficile] Length = 210 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%) Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249 S ++SG V ++ K V E T I + +D+ N MFD S + PE Sbjct: 40 SESISGSVEQDLAKNVNASVEETFKKSGIPVKVDKSNGQVTFGEKTMFDVDSDVLKPEAK 99 Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +L+ + + IS I GHTD N LS RAYS + ++ Sbjct: 100 EMLKMFVPKYIETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156 Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336 + + D+++K I + ++ + NS N RR+++ Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200 >gi|58422897|gb|AAW73248.1| OmpA [Citrobacter freundii] Length = 222 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 114 KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 170 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 RA S L+ G+ D+IS G + Sbjct: 171 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGN 205 >gi|255020103|ref|ZP_05292174.1| outer membrane protein [Acidithiobacillus caldus ATCC 51756] gi|254970465|gb|EET27956.1| outer membrane protein [Acidithiobacillus caldus ATCC 51756] Length = 183 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +SS L I VL ++ E + VI++ G+ AS A N +LS RA S Sbjct: 73 FKFNSSKLLDRDIKVLDEVAEFAQKHPDAVINVNGY--ASKVGTYAY-NLKLSQQRAESV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L + GV DR+ + G ++ ++ N+R++I Sbjct: 130 ARYLEQHGVPRDRMV-LKGHSYEDPIASNATPQGRFENQRVEI 171 >gi|89067611|ref|ZP_01155065.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola granulosus HTCC2516] gi|89046581|gb|EAR52636.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola granulosus HTCC2516] Length = 675 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 F+ +S+ PE L +G+ ++ + + I GHTDA A N LS R Sbjct: 566 FETASAAIRPEEAEELAALGQAITAIIRENPRAVFLIEGHTDAV---GNASYNLALSDRR 622 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRR 333 A S L + GV + + G+ +L + + ANRR Sbjct: 623 AESVALALTEYFGVPPENLV-TQGYGESQLLVPTAEAERANRR 664 >gi|238792361|ref|ZP_04635995.1| Outer membrane protein A [Yersinia intermedia ATCC 29909] gi|238728287|gb|EEQ19807.1| Outer membrane protein A [Yersinia intermedia ATCC 29909] Length = 358 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L+ + + G D N LS Sbjct: 230 KSDVLFAFNKATLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISGF--AHHRLKIASDPMNSANRRIDILV 338 RA S L+ G+ D+I+ ++G A + + A + +RR++I V Sbjct: 287 QRRADSVRDYLVSKGIPADKITARGEGQANPVTGSTCATVKPRAALIECLAPDRRVEIEV 346 Query: 339 E 339 + Sbjct: 347 K 347 >gi|307944546|ref|ZP_07659886.1| outer membrane lipoprotein Omp16 [Roseibium sp. TrichSKD4] gi|307772295|gb|EFO31516.1| outer membrane lipoprotein Omp16 [Roseibium sp. TrichSKD4] Length = 163 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F + S + L K + L + +++ GH D R + N L R Sbjct: 54 DRIYFAEDQSTLSSQARATLDKQVQWLNRYSQYTVTVEGHADE---RGTRQYNLALGARR 110 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A SA L+ G+S RI IS + R +D + NRR Sbjct: 111 ANSARDYLVSRGISTTRIKTIS-YGKERPVAVCNNDSCWTQNRR 153 >gi|158318192|ref|YP_001510700.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec] gi|158113597|gb|ABW15794.1| OmpA/MotB domain protein [Frankia sp. EAN1pec] Length = 186 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD +S+ PE L + + + G++D N LS RA + Sbjct: 89 LFDANSADLRPEAATALAGTVPQIREHDGRVQVVGYSDGL---GTTEHNLDLSRRRAVAV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L+ + + ++ +++ RR++I++ Sbjct: 146 QAYLVSQDIPAS-LLEVEAKGEQ--GATDGVADASRRRVEIVL 185 >gi|326559589|gb|EGE10003.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis 7169] gi|326562671|gb|EGE12973.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis 103P14B1] gi|326564691|gb|EGE14909.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis 46P47B1] gi|326565509|gb|EGE15680.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis 12P80B1] gi|326567731|gb|EGE17837.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis BC1] gi|326568633|gb|EGE18704.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis BC7] gi|326574224|gb|EGE24172.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis 101P30B1] gi|326575009|gb|EGE24938.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis O35E] Length = 171 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ +L + + L + T + + GHTD R N L RA + Sbjct: 71 FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 127 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L+ G+++ + IS F R ++ S NRR ++ Sbjct: 128 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 169 >gi|315057756|gb|ADT72085.1| Flagellar motor rotation protein MotB [Campylobacter jejuni subsp. jejuni S3] Length = 247 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 32/190 (16%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ K+ K+ + K KEE+ L L + + + KRLQ + + VA Sbjct: 60 STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266 N+ V F++ S+ + L++I E+ + I Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRIAELTTYLPPQAKI 155 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 IRG+TD S + L+ RA + + ++ G + I I + + +P Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210 Query: 327 MNSANRRIDI 336 N R++I Sbjct: 211 QALENNRVEI 220 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 IFD + ++K + S +LK Q + ++ L Sbjct: 53 ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183 S + E+G S D++ + + +LPP +K +I Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRIAELTTYLPPQAKIEI 157 >gi|294637420|ref|ZP_06715711.1| peptidoglycan-associated lipoprotein [Edwardsiella tarda ATCC 23685] gi|291089413|gb|EFE21974.1| peptidoglycan-associated lipoprotein [Edwardsiella tarda ATCC 23685] Length = 170 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 7/113 (6%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282 + + + + N F PE + L L ++ +++ GHTD R Sbjct: 57 LQMQELQKNNIVYFGLDKYDVTPEYMQELDAHAAFLRNNPSYKVTVEGHTDE---RGTPE 113 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 N L RA + L GVS D+I +S + + + + + NRR Sbjct: 114 YNIALGERRANAVKMYLQGKGVSADQIDIVS-YGKEKPAVLGHDEAAYAKNRR 165 >gi|239817427|ref|YP_002946337.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110] gi|239804004|gb|ACS21071.1| peptidoglycan-associated lipoprotein [Variovorax paradoxus S110] Length = 168 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 5/101 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P+ V++ L + + I GHTD R N L RA S Sbjct: 67 FDFDKYDVKPQYRNVVEAHASYLRNRPASKVVIEGHTD---LRGGREYNLALGQRRAESV 123 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRID 335 + L + GV +RI +S G ++ + NRR + Sbjct: 124 QRALTQLGVPGERIEAVSWGIEKPASLETTEEGHQLNRRAE 164 >gi|117618437|ref|YP_858623.1| outer membrane protein A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559844|gb|ABK36792.1| outer-membrane protein A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 368 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F+ + + P L + +++A + V ++ GHTD + A N LS RA Sbjct: 249 LFEFNKATLKPAASQALDNLFSQIVAANPKDGVATVIGHTD--RIGSDAY-NQALSEQRA 305 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD----------PMNSANRRIDILVE 339 S L+ G+ D++ ++ G ++ + +RR+++ +E Sbjct: 306 RSVADYLIAKGLFADKV-RVEGRGKSSPITGNNCSSGSKPALIACLAPDRRVEVRLE 361 >gi|86160063|ref|YP_466848.1| OmpA/MotB family outer membrane protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776574|gb|ABC83411.1| outer membrane protein, OmpA/MotB family [Anaeromyxobacter dehalogenans 2CP-C] Length = 412 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 LP + V+L ++ + L +++ HTD + ++ RLS RA + L Sbjct: 313 DDLLPSSAVLLDELAQALRDRPRLRVAVEVHTDGAGDAAASK---RLSQARAEAVRAALA 369 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 G+ +R+ G ++ + NRR ++ + Sbjct: 370 GRGIEGERVEA-RGIGAEHPIASNKTARGRAQNRRTEVRILP 410 >gi|146985|gb|AAA24233.1| outer membrane protein II [Escherichia vulneris] Length = 238 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + G+TD + N +LS Sbjct: 119 KSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTD--RIGSEQY-NQKLS 175 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ ++IS G + D + + +RR+ I Sbjct: 176 EKRAQSVVDYLVAKGIPANKISA-RGMGESDPVTGNTCDNVKARAALIDCLAPDRRVAIE 234 Query: 338 VE 339 V+ Sbjct: 235 VK 236 >gi|262171987|ref|ZP_06039665.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus MB-451] gi|261893063|gb|EEY39049.1| sodium-type flagellar protein MotY precursor [Vibrio mimicus MB-451] Length = 286 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L +I E + +++++ + + +TD++ N +++ LS RA + Sbjct: 184 SVELNKASQKRLAQIAEYVRYNSDIDLVLVSTYTDSTDTNNNSQN---LSEKRAEVLREY 240 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQ 342 G+ EDRI ++ G+ R + NRR+ I + Q Sbjct: 241 FKSIGLPEDRI-QVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQ 285 >gi|262171113|ref|ZP_06038791.1| outer membrane protein [Vibrio mimicus MB-451] gi|261892189|gb|EEY38175.1| outer membrane protein [Vibrio mimicus MB-451] Length = 278 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 24/198 (12%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 LEK L + ++KRL L +++ S F + Sbjct: 83 QALEKQNRIARQLDGGLLLDAANDLVIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142 Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274 +S+I++ N + F +S+ P+ + L + L A +S+ GH D+ Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKARQDLTLSVTGHADS 197 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 + N +L++ RA + L G++ +RI+ S + NR Sbjct: 198 ---SGNSEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253 Query: 333 RIDILV-------EDRQG 343 R+ I + +QG Sbjct: 254 RVSIEIITADSPNLSKQG 271 >gi|33519799|ref|NP_878631.1| peptidoglycan-associated lipoprotein precursor [Candidatus Blochmannia floridanus] gi|33504144|emb|CAD83406.1| peptidoglycan-associated lipoprotein precursor [Candidatus Blochmannia floridanus] Length = 174 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDN 284 I + +NT F LP +L + L ++ I I GHTD R N Sbjct: 63 IQNLKLKNTIYFSLDQYCVLPIFFEILDLHADFLCNNPLYKIIIEGHTDE---RGTPEYN 119 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 L RAY+ + L GV ++I +S + + ++ S NRR+ +L Sbjct: 120 IGLGERRAYAVKKYLQSKGVLSNQIDTVS-YGKEKPIAFGQNEESYSKNRRVVLL 173 >gi|126046419|gb|ABN73094.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD R A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VRGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|19881375|gb|AAM00930.1|AF491822_1 hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDVAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDTVKGRKALIACLADDRRVEISVK 341 >gi|77462481|ref|YP_351985.1| OmpA/MotB family outer membrane protein [Rhodobacter sphaeroides 2.4.1] gi|77386899|gb|ABA78084.1| Outer membrane protein, OmpA/MotB family [Rhodobacter sphaeroides 2.4.1] Length = 701 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 14/235 (5%) Query: 108 KNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 S + + + + + + + T +G+++ DLE Sbjct: 463 PGSEVVTQSFDDGSTRSVVTRADGTQIVTIRDASGRVLRRTAVDGQGREVMLIDDLESYQ 522 Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 + + P + + ++ L+ ++ + L ++ + + + Sbjct: 523 AVDVSRLPEPAPVYSFVQTRDQRDLRQALEQTRTR--DLDRTYSLRQIREYREVRALAPA 580 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIAR 282 I + FD S+ P+ L +G+ +A EV I GHTDA A Sbjct: 581 I--DVDQITFDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAA 635 Query: 283 DNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 N LS RA S L + V + + + G+ L++ SD NRR+ + Sbjct: 636 SNLALSDRRAESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 689 >gi|284039792|ref|YP_003389722.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] gi|283819085|gb|ADB40923.1| OmpA/MotB domain protein [Spirosoma linguale DSM 74] Length = 813 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%) Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 SS+ + + + + + + +I IR HTD+ R A N LSL RA + L Sbjct: 709 SSLREDAARELDKVVATMRKYPSLIIEIRSHTDS---RGDAERNKALSLQRAKAVAAYLA 765 Query: 301 KSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVEDRQ 342 G+S R+ G +L ++ + NRR + V + + Sbjct: 766 SKGISRKRM-ATLGMGESQLVNNCTDGVICTEAEHQRNRRTEFRVVEIK 813 >gi|146302267|ref|YP_001196858.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156685|gb|ABQ07539.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 643 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S E + L+KI +VL + + IR HTD+ R + N LS RA S Sbjct: 535 FDLDKSNIRTEAALDLEKILDVLNQNPTMKLDIRSHTDS---RASHQYNEALSDRRAKST 591 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 L+++GV+++R++ G+ +L ++ + NRR + ++ Sbjct: 592 ISWLIQNGVAKNRLTG-KGYGETQLVNQCSDGVNCTEEEHQMNRRSEFII 640 >gi|87118951|ref|ZP_01074849.1| peptidoglycan-associated lipoprotein OprL [Marinomonas sp. MED121] gi|86165342|gb|EAQ66609.1| peptidoglycan-associated lipoprotein OprL [Marinomonas sp. MED121] Length = 208 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SI PE L K + L + + + + GH D R N L RA + Sbjct: 107 FDFDKSIVRPEAREALAKHAKFLVANPDARVVLEGHADE---RGTREYNMALGERRAKAV 163 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + L GV+ +I +S F + + ANRR+++ Sbjct: 164 SRYLTIQGVAAAQIESVS-FGEEKPLEFGHDKAAWQANRRVEV 205 >gi|148368|gb|AAA24807.1| outer membrane protein II [Enterobacter aerogenes] Length = 238 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N LS Sbjct: 119 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 175 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++IS G S P + +RR++I Sbjct: 176 EKRAQSVVDYLVSKGIPANKISP-RGMGESNPVTGSTCDNVKPRAALIDCLAPDRRVEIE 234 Query: 338 VE 339 V+ Sbjct: 235 VK 236 >gi|23012822|ref|ZP_00052818.1| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum magnetotacticum MS-1] Length = 278 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S E L+++ I + GHTD + D +LS RA + Sbjct: 178 FDFNKSTLTKEAQKTLKEVVASAGQIKPSSIYVAGHTDTV-GKAGYND--KLSKARAAAV 234 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + L K GV +K GFA + ++ + NRR++I Sbjct: 235 EKQLAKLGVKSID-AKAFGFAKLAVPTKANTKEAKNRRVEI 274 >gi|260768773|ref|ZP_05877707.1| putative sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP 102972] gi|260616803|gb|EEX41988.1| putative sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP 102972] Length = 254 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L+ I E++ ++ + I GH+D+ N +S RA Sbjct: 150 FQSGVLALTQNQRSQLEAISELVLFDPKIKTVRITGHSDS---HGDTVVNLSVSRRRADD 206 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 +M +GV + + +I G A++ ANRR++I + R Sbjct: 207 VAYWMMMAGVPTE-MMEIRGQGGRYPVANNATEEGRLANRRVEIELVRR 254 >gi|206580983|ref|YP_002237058.1| OmpA family protein [Klebsiella pneumoniae 342] gi|288934021|ref|YP_003438080.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|290510919|ref|ZP_06550288.1| lipoprotein yfiB [Klebsiella sp. 1_1_55] gi|206570041|gb|ACI11817.1| OmpA family protein [Klebsiella pneumoniae 342] gi|288888750|gb|ADC57068.1| OmpA/MotB domain protein [Klebsiella variicola At-22] gi|289775912|gb|EFD83911.1| lipoprotein yfiB [Klebsiella sp. 1_1_55] Length = 160 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 ++ +FDK+ P++ + + LA + + GHTD N LSL R Sbjct: 52 DSILFDKNDYRLRPDSRQQITTMASRLAATGITHSRLEGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338 A S G R ++ G ++D + NRR+ +++ Sbjct: 109 ANSVADA-WAEGAHVPRSHLVTRGLGKKYPIASNDTAAGRAENRRVTVVI 157 >gi|188534230|ref|YP_001908027.1| outer membrane protein A [Erwinia tasmaniensis Et1/99] gi|188029272|emb|CAO97149.1| Outer membrane protein A [Erwinia tasmaniensis Et1/99] Length = 355 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + + PE L ++ L++ + + G+TD + N +LS Sbjct: 227 KSDVLFTFNKASLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ G+ +IS G + D + + +RR++I Sbjct: 284 EKRAQSVVDYLVSKGIPSSKISA-RGEGKSNPVTGNTCDSVKARKALIDCLGPDRRVEIE 342 Query: 338 VE 339 V+ Sbjct: 343 VK 344 >gi|209695366|ref|YP_002263295.1| peptidoglycan-associated lipoprotein precursor [Aliivibrio salmonicida LFI1238] gi|208009318|emb|CAQ79584.1| peptidoglycan-associated lipoprotein precursor [Aliivibrio salmonicida LFI1238] Length = 185 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFR 278 T + + Q T F +S E +L L+ + +++ GH D R Sbjct: 68 TEQEVKEQALRQVQTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGHADE---R 124 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 N L RA + + L GVS D+IS +S + + + + + NRR Sbjct: 125 GTPEYNIALGERRANAVAKYLQALGVSADQISIVS-YGEEKPLVLGQTAEDYAKNRR 180 >gi|254463477|ref|ZP_05076893.1| OmpA family protein [Rhodobacterales bacterium HTCC2083] gi|206680066|gb|EDZ44553.1| OmpA family protein [Rhodobacteraceae bacterium HTCC2083] Length = 211 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP- 326 I GHTD+ R N RLS +RA + + +G R++ + G+ ++ Sbjct: 143 IAGHTDS---RASDEYNMRLSYNRATTVANIARSAG---ARVADVRGYGERMPVASNKSQ 196 Query: 327 -MNSANRRIDIL 337 S NRR++I+ Sbjct: 197 VGMSKNRRVEII 208 >gi|50120684|ref|YP_049851.1| outer membrane protein A [Pectobacterium atrosepticum SCRI1043] gi|49611210|emb|CAG74656.1| outer-membrane protein A [Pectobacterium atrosepticum SCRI1043] Length = 366 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G TD + N LS Sbjct: 238 KSDVLFNFNKATLKPEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQALS 294 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ +++S G + S P + +RR++I Sbjct: 295 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 353 Query: 338 VE 339 V+ Sbjct: 354 VK 355 >gi|239908713|ref|YP_002955455.1| hypothetical protein DMR_40780 [Desulfovibrio magneticus RS-1] gi|239798580|dbj|BAH77569.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 1002 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 15/187 (8%) Query: 158 CKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLF 217 T + + + + + L + +K+ + + A Sbjct: 822 EAQTRILAEFETLKERLAGADAGAAAVRAETAGHLVAVLQKLDALKTSEAAPGPGPAPAT 881 Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASP 276 T + I+I F P+ + + + L + + + G+TD S Sbjct: 882 RTGSGAVKITIP-------FSSEQGSVPPDAAGQIAEAAQRLKAAGVGSVLVIGYTDNSR 934 Query: 277 FRNI----ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSA 330 R N LS RA S + L+K+G+ ++ +I GF +D Sbjct: 935 LRRALLRQYGTNAVLSQARAASVAEGLVKNGIDAGKV-QIHGFGSAMPVSPNDTPFNREK 993 Query: 331 NRRIDIL 337 NRR++I+ Sbjct: 994 NRRVEII 1000 >gi|254476085|ref|ZP_05089471.1| OmpA family protein [Ruegeria sp. R11] gi|214030328|gb|EEB71163.1| OmpA family protein [Ruegeria sp. R11] Length = 196 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S+ PE L ++ VL+ + + + GHTD+ + N RLS RA Sbjct: 86 FPFNSNALTPEYEAHLARLAAVLSSAQLQNSCVKLVGHTDSI---GSDQFNMRLSKTRAQ 142 Query: 294 SAYQVL-MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L ++ GV+ +RI S L + NRR++IL Sbjct: 143 RVAAYLALEGGVAMERIQTAS-LGEKHLIKGLPGPHPLNRRVEIL 186 >gi|327402931|ref|YP_004343769.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318439|gb|AEA42931.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 254 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 19/107 (17%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGH----TDASPFRNIARDNWRLSLDR 291 F LP + + + E L A T I++ GH TD+ LS R Sbjct: 153 FAYGLDAMLPSSYNDIHFLIETLQADKTLFITLAGHVCCGTDSK----------NLSGMR 202 Query: 292 AYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRID 335 A Q+L+ G +S RI+ I GF + + D ANRR++ Sbjct: 203 AERIKQILIMEGSISSSRINAI-GFGNKKPLFEDDTEIHRQANRRVE 248 >gi|119477236|ref|ZP_01617472.1| peptidoglycan-associated lipoprotein OprL [marine gamma proteobacterium HTCC2143] gi|119449599|gb|EAW30837.1| peptidoglycan-associated lipoprotein OprL [marine gamma proteobacterium HTCC2143] Length = 175 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD + +T L VL ++ + + GH D R N L+ RA + Sbjct: 77 FDFDQATLSADTREALDSQIAVLNENSNKVRLEGHADE---RGTREYNMALAERRANAIA 133 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 ++ +GV+ R+ +S + R +S+ S NRR+++ Sbjct: 134 NYMIINGVARYRVETVS-YGEERPVSAGSSESSYSENRRVEL 174 >gi|91786622|ref|YP_547574.1| Type I secretion outer membrane protein TolC [Polaromonas sp. JS666] gi|91695847|gb|ABE42676.1| Type I secretion outer membrane protein, TolC [Polaromonas sp. JS666] Length = 658 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 21/294 (7%) Query: 57 TDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIG 116 + + +++A Q F + L+ + D QN +++++ ++ S D+ I + +G Sbjct: 373 STEKSREAYLQQFELGQRTLLD----LLDSQNEYFQANRSYVNASYDQIIAQARTLAGMG 428 Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY--- 173 +R + + ++ L E ++ Sbjct: 429 QLVTALNVKRGDVPSAQDAGQDRTGIDPAELCPQDETVVATVDQIKARFAVAPRRTGSYV 488 Query: 174 ---FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-- 228 P S +++ + + + L G V V V E G I+ Sbjct: 489 VLLPNPDNSVGRVVVQGNRGEQTLAQAQQGTLLDGSVKPFEVSKVQVER-DFGAAIAARP 547 Query: 229 -IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWR 286 + + T F + S+ + V+ +I E+ I++ GHTD A N Sbjct: 548 PLPESFTLYFQRGSTELTAASKAVMSRIKELAKARKALDITVIGHTDTM---GTAESNEV 604 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 L L RA + + + + G+ I + L +A+ + NRR +I V Sbjct: 605 LGLRRANAIAKQMQQLGLRNTAII-VESNGERNLFVATPQNTNEPRNRRAEITV 657 >gi|326568759|gb|EGE18829.1| peptidoglycan-associated lipoprotein [Moraxella catarrhalis BC8] Length = 171 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ +L + + L + T + + GHTD R N L RA + Sbjct: 71 FDFDSDEIKPQAAAILDEQAQFLTTNQTARVLVAGHTDE---RGSREYNMSLGERRAVAV 127 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 L+ G+++ + IS F R ++ S NRR ++ Sbjct: 128 RNYLLGKGINQASVEIIS-FGEERPIAFGTNEEAWSQNRRAEL 169 >gi|320533459|ref|ZP_08034136.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320134317|gb|EFW26588.1| OmpA family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 490 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 255 IGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISK 311 + +A ++I GHTD N LS RA + L +G+ + Sbjct: 202 VAGQIAQYPDGGTLTIVGHTDDVQ---DDAYNQALSEKRANTVKTRLGQLTGLDKWN-PS 257 Query: 312 ISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 ++G +++ +D +ANRR++I + G Sbjct: 258 VAGKGESEPRVSGTTDEARAANRRVEITLTPTGG 291 >gi|37704606|gb|AAR01575.1| OprF [Pseudomonas sp. MFY33] Length = 316 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + ++ + + + ++ GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKENSYGDIKNLADFMKQYPSTSTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESTRVQSV-GYGESRPVA 316 >gi|303248654|ref|ZP_07334908.1| peptidoglycan-associated lipoprotein [Desulfovibrio fructosovorans JJ] gi|302489910|gb|EFL49836.1| peptidoglycan-associated lipoprotein [Desulfovibrio fructosovorans JJ] Length = 171 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS E+ +L + E++ + + + G+ D R A N L RA +A Sbjct: 69 FAFDSSNLTAESRQILTRKAEIMRQYPQIKVIVEGNCDQ---RGTAEYNLALGERRAQAA 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 Q L G+ DR+S +S + R S+ + NRR Sbjct: 126 AQYLSNLGIPADRLSTVS-YGKERPLDPGHSEAAYAKNRR 164 >gi|59711533|ref|YP_204309.1| flagellar motor protein MotY [Vibrio fischeri ES114] gi|59479634|gb|AAW85421.1| flagellar motor protein MotY [Vibrio fischeri ES114] Length = 292 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FDK+S + L +I + + ++ +V + + +TD+ N ++S RA Sbjct: 186 FDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDS---SGGKNVNQQVSERRALK 242 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G+ DRI ++ + R + + NRR+ I + Sbjct: 243 LQNYFESIGLPADRI-RVHSYGERRPIADNATPIGKNKNRRVVISL 287 >gi|224536169|ref|ZP_03676708.1| hypothetical protein BACCELL_01035 [Bacteroides cellulosilyticus DSM 14838] gi|224522209|gb|EEF91314.1| hypothetical protein BACCELL_01035 [Bacteroides cellulosilyticus DSM 14838] Length = 396 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 7/143 (4%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID-QRNTP 235 P +I + +L + + + + LV + E T T +++ D T Sbjct: 239 PQLISQIELAAMQDKLAMMGAQNAELKNALVQAE--NQPVAEVTETQVIVPDPDIAPRTV 296 Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S+ P I+ L + E + ++ G+ D++ N LSL RA + Sbjct: 297 FFQIGSAELSPREIMNLSYLAEQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRAQA 354 Query: 295 AYQVLMKS-GVSEDRISKISGFA 316 L+K+ G++ DR++ +G Sbjct: 355 VKNALVKNYGIAADRLNVEAGGG 377 >gi|209809438|ref|YP_002264976.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] gi|208011000|emb|CAQ81413.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] Length = 307 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ S L + + I+I GHTD ++ N LS RA S Sbjct: 62 FEFDKSELKETDYASLNQFVNSIKRFKGRIAIVGHTD---YQGSVSYNEELSRQRAESIK 118 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 L + V + ++ + R I N+ANRR Sbjct: 119 AYLSEKLVVSNYEWEVKYYGEKRPFIKGRSLEANAANRR 157 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F V L ++ L T I I GHTD ++ N +L+ +R+ + Sbjct: 191 FAFDKDELQNTDKVELDELALKLTGLTGRILIAGHTD---YQGSQSYNEQLAKERSMAVQ 247 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333 L I +I F I + N+ANRR Sbjct: 248 NYLKTKVDPSQFIWEIKSFGEDSPIIEERSLKANAANRR 286 >gi|17230523|ref|NP_487071.1| hypothetical protein all3031 [Nostoc sp. PCC 7120] gi|17132125|dbj|BAB74730.1| all3031 [Nostoc sp. PCC 7120] Length = 599 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS---------TEVISIRGHTDASPFRNIA 281 +R F + S +P + L + + I I GHT+ + Sbjct: 476 EREIIFFPEGSQEIIPSELSKLNNLVLAIKKLLPIAKYLEKDVHIQIIGHTNTT---GTE 532 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID--IL 337 N +LS R+ L G+S ++ ++ G + + +D NRR+ ++ Sbjct: 533 SRNAQLSAGRSQRVLSYLSSQGISTSQL-QVLGVSSSQPLQPELTDEGKKFNRRVSFKVI 591 Query: 338 VED 340 + Sbjct: 592 IMR 594 >gi|126461359|ref|YP_001042473.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103023|gb|ABN75701.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 701 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 FD S+ P+ L +G+ +A EV I GHTDA A N LS R Sbjct: 588 FDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAASNLALSDRR 644 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S L + V + + + G+ L++ SD NRR+ + Sbjct: 645 AESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 689 >gi|258625023|ref|ZP_05719945.1| Outer membrane protein [Vibrio mimicus VM603] gi|258582691|gb|EEW07518.1| Outer membrane protein [Vibrio mimicus VM603] Length = 278 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 24/198 (12%) Query: 161 TDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETT 220 LEK L + ++KRL L +++ S F + Sbjct: 83 QALEKQNRIARQLDGGLLLDAANDLVIQRKRLNQLEQQLDYVTSQTRCVPPQNEQSFVNS 142 Query: 221 RTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274 +S+I++ N + F +S+ P+ + L + L A +S+ GH D+ Sbjct: 143 -----LSLIEELNRLLNVDNQFAINSTEINPKYMGNLAIAADKLKARQDLTLSVTGHADS 197 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NR 332 + N +L++ RA + L G++ +RI+ S + NR Sbjct: 198 ---SGNSEFNEKLAMGRAEQVKRYLTIFGLAPERITTHS-LGESLPLYVGETPGVKLTNR 253 Query: 333 RIDILV-------EDRQG 343 R+ I + +QG Sbjct: 254 RVSIEIITADSPNLSKQG 271 >gi|187479386|ref|YP_787411.1| peptidoglycan-associated lipoprotein [Bordetella avium 197N] gi|115423973|emb|CAJ50526.1| peptidoglycan-associated lipoprotein [Bordetella avium 197N] Length = 165 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNW 285 SI+ Q+ + FD S + +++ LA + I I G+TD R A N Sbjct: 53 SILAQQRSVYFDFDSYGVSDQYRGLVETHARYLASHPQQRIKIEGNTDD---RGGAEYNL 109 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 L RA + +++ GV++ +I IS G + +++ + NRR DI+ Sbjct: 110 ALGQRRADAVRRMMTLLGVADAQIEAISFGKEKPKATGSTEADFAENRRADIV 162 >gi|86130725|ref|ZP_01049325.1| OmpA family protein [Dokdonia donghaensis MED134] gi|85819400|gb|EAQ40559.1| OmpA family protein [Dokdonia donghaensis MED134] Length = 649 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 12/147 (8%) Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 LSG + + + + + G I+ I N FD P+ + L K+ + Sbjct: 505 NLSGEIQEFLQLERAVQIAKPGDDIAKILNLNPIYFDFDKYYIRPDAEIELAKVLVYMET 564 Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 I +R HTD+ R N LS +R S L+ G++ R+S G+ +L Sbjct: 565 YPSVRIDVRSHTDS---RGNDEYNRTLSQNRNVSTRDWLIAKGINPSRLSG-RGYGESQL 620 Query: 321 KIA-------SDPMNSANRRIDILVED 340 S+ + NRR + +V Sbjct: 621 VNECSNGVQCSEEQHQLNRRSEFIVLS 647 >gi|57238205|ref|YP_178714.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221] gi|86149924|ref|ZP_01068153.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|148925958|ref|ZP_01809645.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|283956011|ref|ZP_06373500.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 1336] gi|57167009|gb|AAW35788.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221] gi|85839742|gb|EAQ57002.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|145844944|gb|EDK22048.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|283792487|gb|EFC31267.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 1336] gi|315927335|gb|EFV06679.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 317 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ Q + ++T Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + KDL + D + +K+ L L K+ ++ Q +K+ + GL+ Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156 Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256 +N+ K + + I+I ++ + +FDK S + E L+KI Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213 Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309 ++ ++ I I GHTD+ N LS RAY + S+ ++ Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269 Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + +RRI+I Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297 >gi|289549271|ref|YP_003474259.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484] gi|289182888|gb|ADC90132.1| OmpA/MotB domain protein [Thermocrinis albus DSM 14484] Length = 335 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 64/163 (39%), Gaps = 12/163 (7%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 ++ L + +++ L+ K ++ + R +++ F+ Sbjct: 175 EAKRKLEVAKREGLECYVGKREVVKEEEPQESPISTGEKTVEREYLMV-----PARVHFE 229 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 +S E I +L ++ +L + + + I G+TD + N +L+ RA + Sbjct: 230 FNSYTIKKEYIPLLLEVARILKENPQIRVRIEGYTDN--IGSKEY-NEKLAFKRAKAVAD 286 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 L K GV +D+I I+GF + NRR D +V Sbjct: 287 FLKKQGVPQDKIE-IAGFGKEGYIAPNTTPIGRFTNRRADFIV 328 >gi|269104382|ref|ZP_06157078.1| outer membrane protein A precursor [Photobacterium damselae subsp. damselae CIP 102761] gi|268161022|gb|EEZ39519.1| outer membrane protein A precursor [Photobacterium damselae subsp. damselae CIP 102761] Length = 335 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%) Query: 237 FDKSS------SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 FD SS + +P + ++ I + G+TD+ + N +LS Sbjct: 222 FDSSSISTGDAAKLVPFEQRLQEQDAA-------QIYVVGYTDS---KGSEAYNQKLSER 271 Query: 291 RAYSAYQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDIL 337 RA + L V RI G A ++ + NRR++I+ Sbjct: 272 RADAVADALRAHLNVDGSRIIAEGRGEADPVASNQTEEGRAQNRRVEIV 320 >gi|331015715|gb|EGH95771.1| ompA family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 320 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 98 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 214 RALNRRVEILMTPQ 227 >gi|197335579|ref|YP_002155689.1| sodium-type flagellar protein MotY [Vibrio fischeri MJ11] gi|197317069|gb|ACH66516.1| sodium-type flagellar protein MotY [Vibrio fischeri MJ11] Length = 292 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FDK+S + L +I + + ++ +V + + +TD+ N ++S RA Sbjct: 186 FDKNSDELNKASKKRLSQIADFIKYTKDVDLVLVATYTDS---SGGKNVNQQVSERRALK 242 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G+ DRI ++ + R + + NRR+ I + Sbjct: 243 LQNYFESIGLPADRI-RVHSYGERRPIADNATPIGKNKNRRVVISL 287 >gi|167619124|ref|ZP_02387755.1| OmpA family protein [Burkholderia thailandensis Bt4] gi|257138357|ref|ZP_05586619.1| OmpA family protein [Burkholderia thailandensis E264] Length = 209 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L ++ + + + G+TD + ++ RLSL RA + Sbjct: 86 LFDFDKAILKPAGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLRRAQA 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVEDRQ 342 L+ GV +++ G I + N RR+++ V Q Sbjct: 143 VKSYLVSKGVPANKVY-TEGKGKRNP-ITGNTCKQKNRKQLIACLAPDRRVEVEVVGTQ 199 >gi|289640922|ref|ZP_06473092.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata] gi|289509237|gb|EFD30166.1| OmpA/MotB domain protein [Frankia symbiont of Datisca glomerata] Length = 394 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 F SS V L +I VL S + + GH DA R N LSL RA Sbjct: 288 GRITFATDSSELTEADRVHLDRIAAVLRESELSVLLAGHADA---RGPGVLNETLSLARA 344 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 +A L GVS D + + +GFA A++ +ANRR++I Sbjct: 345 RAAAAYLADQGVSADHL-RAAGFASEHPVATNATEAGRAANRRVEI 389 >gi|255101058|ref|ZP_05330035.1| hypothetical protein CdifQCD-6_09624 [Clostridium difficile QCD-63q42] Length = 210 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%) Query: 200 SSTLSGLVADNIVKGV--LFETTRTGILISI-IDQRN-------TPMFDKSSSIPLPETI 249 S ++SG V ++ K V E T I + +D+ N MFD S + PE Sbjct: 40 SESISGSVEQDLAKNVNASVEETFKKSGIPVKVDKSNGQVTFGEKTMFDIDSDVLKPEAK 99 Query: 250 VVLQKIGE-----VLAHSTEVIS---IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +L+ + + IS I GHTD N LS RAYS + ++ Sbjct: 100 EMLKMFVPKYIETIYKDYGDYISKIVIEGHTDDV---GSYIYNLDLSQRRAYSVAKFIVG 156 Query: 302 SGVSE----DRISK-ISGFAHHRLKIASDPMNSAN----RRIDI 336 + + D+++K I + ++ + NS N RR+++ Sbjct: 157 DEIGDYKYKDKVTKHIIAIGRSKAELIKNGDNSVNRDASRRVEL 200 >gi|330971005|gb|EGH71071.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 317 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 158 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 217 Query: 270 GHTD-ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP-- 326 GH D + P N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 218 GHADTSGPIEA----NQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQ 272 Query: 327 MNSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 273 GRALNRRVEILMTPQ 287 >gi|205355449|ref|ZP_03222220.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346683|gb|EDZ33315.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 317 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ Q + ++T Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + KDL + D + +K+ L L K+ ++ Q +K+ + GL+ Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156 Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256 +N+ K + + I+I ++ + +FDK S + E L+KI Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKTSLRKILSEYFDA 213 Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309 ++ ++ I I GHTD+ N LS RAY + S+ ++ Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269 Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + +RRI+I Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297 >gi|38422322|emb|CAE45324.1| unnamed protein product [Magnetospirillum gryphiswaldense] gi|144897900|emb|CAM74764.1| Outer membrane protein and related peptidoglycan-associated (lipo) [Magnetospirillum gryphiswaldense MSR-1] Length = 163 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWR 286 I + + FD + L K L ++I GH D R N Sbjct: 52 IANVGDRVFFDFDKYALRADAKGSLDKQAAWLKKYPTYSLTIEGHADE---RGTREYNLA 108 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 L RA S + L+ +GV R+ IS G +++ S NRR Sbjct: 109 LGERRANSVKEYLVGAGVPAARVKTISYGKERPVALGSNEAAWSQNRR 156 >gi|163731712|ref|ZP_02139159.1| hypothetical protein RLO149_20449 [Roseobacter litoralis Och 149] gi|161395166|gb|EDQ19488.1| hypothetical protein RLO149_20449 [Roseobacter litoralis Och 149] Length = 344 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 108/349 (30%), Gaps = 67/349 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + S I D ++ L++ P ++ Sbjct: 5 RHHARYGDEEDESAFISMTDMTVSILFIVLILLAF----------FASQLRPEQTVTVSE 54 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + + + ER +Q ++ S E T ++D+ ++ + + + + Sbjct: 55 YERVVAQ--LDEREAQLRVAQSAIEDWTDGTLDVATLLRLREDVLRLTTEVTNLQARAGR 112 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 SE + + E+ L + P +A +R+ L L +I Sbjct: 113 SEDLEQDIVVLREELNRARTQLSLIEVN--------PLEMYNSSVAQERENLLTSLRDQI 164 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + L GV + + +F S + + +++I +++ Sbjct: 165 AEEFPEL-------GVRVSDGKDALQFQ-----GEGLFASGSPRLSAGSQIKIERIADLI 212 Query: 260 AHS----------------------TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 E + I GHTD+ A N LS RA + Y Sbjct: 213 HAVLPCYTMGPQSAYDAQCNPSFAIVEALQIEGHTDS---DGSANANVSLSSQRAATTYG 269 Query: 298 VLMKS--GVSEDR------ISKISGFAHHRL--KIASDPMNSANRRIDI 336 ++ G++ + + ++G+ R +S SANRRID+ Sbjct: 270 AMISHQPGLNIHQNFTDQPVLSVAGYGEDRPVTLNSSPEGKSANRRIDL 318 >gi|332534626|ref|ZP_08410458.1| putative component of sodium-driven polar flagellar motor [Pseudoalteromonas haloplanktis ANT/505] gi|332035906|gb|EGI72387.1| putative component of sodium-driven polar flagellar motor [Pseudoalteromonas haloplanktis ANT/505] Length = 292 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 227 SIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARD 283 S D T M + +SS + L KI E L + E ISI +TD+ + Sbjct: 177 SFEDISFTVMNYQSNSSKLTKSSQQRLDKIAEYLKNDASIESISIDSYTDSY---GGRWN 233 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 N LS RA + ++ GV E ++ + +G R +D NRR+ I +E Sbjct: 234 NLDLSRKRAKTIKDYMVSLGVDEAKV-QTTGLGEKRFVDNNDNILGRDKNRRLIIQIE 290 >gi|257469789|ref|ZP_05633881.1| putative autotransporter protein [Fusobacterium ulcerans ATCC 49185] Length = 1198 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289 +N FD+SS + V++KI E + +++ ++I GHTD+ N +LS Sbjct: 1091 KNHFSFDESS--LTEDGKKVIRKISEEIDKNSKRGILTIEGHTDS--IGTTEY-NQKLSE 1145 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 RA S + ++ + + + G+ R + + NRR+DI Sbjct: 1146 KRAESVEKEFKEN-LKTEIKYETKGYGKSRPVADNKIAEGRAKNRRVDI 1193 >gi|255020134|ref|ZP_05292204.1| peptidoglycan-associated outer membrane lipoprotein [Acidithiobacillus caldus ATCC 51756] gi|254970427|gb|EET27919.1| peptidoglycan-associated outer membrane lipoprotein [Acidithiobacillus caldus ATCC 51756] Length = 193 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S + + + ++ H+ + + G+TD R N L RA + Sbjct: 86 FGFNSDSLDARAQEIASQNAQFMMNHAHVKVRLEGNTDD---RGTQEYNLALGERRAEAV 142 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + L GVS RIS +S F + + + NRR+D + Sbjct: 143 KRYLEAQGVSAARISTVS-FGKDNPLCNQNDESCWAKNRRVDFV 185 >gi|90426219|ref|YP_534589.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] gi|90108233|gb|ABD90270.1| OmpA/MotB [Rhodopseudomonas palustris BisB18] Length = 166 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ I L K + L +I GH D R N L R Sbjct: 58 DRVFFESDQTDLSPQAIATLDKQAQWLQSYNRYSFTIEGHADE---RGTREYNIALGARR 114 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G+ R+ IS + R + ++ S NRR Sbjct: 115 AQSVRTYLTSRGIDSSRMRTIS-YGKERPVAVCNDISCWSQNRR 157 >gi|301384367|ref|ZP_07232785.1| ompA family protein [Pseudomonas syringae pv. tomato Max13] gi|302133682|ref|ZP_07259672.1| ompA family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 320 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 98 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 214 RALNRRVEILMTPQ 227 >gi|1171900|sp|P45996|OMP53_HAEIN RecName: Full=Outer membrane protein P5; Short=OMP P5; AltName: Full=Fimbrin; Flags: Precursor gi|305373|gb|AAA24959.1| fimbrial protein [Haemophilus influenzae] Length = 359 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L + ++ + +++ G+T + + A + +LS +RA S Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSRKVAVAGYT--NRIGSDAFNV-KLSQERADSV 302 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 303 ANYFVAKGVAADAISA-TGYGEANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355 >gi|70732082|ref|YP_261838.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens Pf-5] gi|68346381|gb|AAY93987.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens Pf-5] Length = 165 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 66 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GVS ++ +S + D + + NRR+++ Sbjct: 123 RYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 163 >gi|317064019|ref|ZP_07928504.1| autotransporter protease [Fusobacterium ulcerans ATCC 49185] gi|313689695|gb|EFS26530.1| autotransporter protease [Fusobacterium ulcerans ATCC 49185] Length = 805 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSL 289 +N FD+SS + V++KI E + +++ ++I GHTD+ N +LS Sbjct: 698 KNHFSFDESS--LTEDGKKVIRKISEEIDKNSKRGILTIEGHTDS--IGTTEY-NQKLSE 752 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 RA S + ++ + + + G+ R + + NRR+DI Sbjct: 753 KRAESVEKEFKEN-LKTEIKYETKGYGKSRPVADNKIAEGRAKNRRVDI 800 >gi|111220228|ref|YP_711022.1| hypothetical protein FRAAL0749 [Frankia alni ACN14a] gi|111147760|emb|CAJ59419.1| Putative outer membrane protein [Frankia alni ACN14a] Length = 186 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +FD +SS E + LQ++ + IS+ G++D DN +LSL+RA S Sbjct: 89 LFDSNSSELRGEAMTALQQVLPAIREHPGPISVIGYSDGL---GRTEDNQKLSLERAKSV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L + + + G +++ RR++I++ Sbjct: 146 EAWLATQNIPSS-VLDVEGRGEQ--GAQDGVADASRRRVEIVL 185 >gi|300790394|ref|YP_003770685.1| OmpA family protein [Amycolatopsis mediterranei U32] gi|299799908|gb|ADJ50283.1| OmpA family protein [Amycolatopsis mediterranei U32] Length = 242 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ ++ P+ + + LA + + GH P +LS DRA + Sbjct: 145 FEPDTAKLTPDGEQAARSVAIALAKAPAGFRYRVTGHVARGP--GGESAALKLSRDRARA 202 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 ++L +G++ R++ G R + RR++I V Sbjct: 203 VARILTTNGLTVARVT-YRGLGDTRPATGGEED----RRVEITV 241 >gi|124004937|ref|ZP_01689780.1| peptidoglycan-associated cytoplasmic membrane protein, putative [Microscilla marina ATCC 23134] gi|123989615|gb|EAY29161.1| peptidoglycan-associated cytoplasmic membrane protein, putative [Microscilla marina ATCC 23134] Length = 693 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S E L+K+ L + + + + GH D + N +LS DRA Sbjct: 581 FFDYKSDNIKKEHEKDLEKLVSYLISNPDANLVLNGHADQT---GTETRNKQLSSDRARK 637 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRID 335 + L+ ++ +R++ + + +L ++ + NRR++ Sbjct: 638 VMEYLIGRDINPNRVT-LKAWGEQKLIDKRDNEKGRARNRRVE 679 >gi|86136016|ref|ZP_01054595.1| OmpA family protein [Roseobacter sp. MED193] gi|85826890|gb|EAQ47086.1| OmpA family protein [Roseobacter sp. MED193] Length = 188 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F L++ + I GHTD+ R N RLS RA + Sbjct: 88 FFATDKHYISAAGKTRLKEFFNSNKGNVRSFVIAGHTDS---RASDEYNIRLSQRRANAV 144 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 V G RI+ I + ++ + + + NRR++I Sbjct: 145 AGVAKSVG---ARIADIRAYGERDPRVPNTSASNMAQNRRVEI 184 >gi|88597019|ref|ZP_01100255.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218562250|ref|YP_002344029.1| putative OmpA family membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88190708|gb|EAQ94681.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112359956|emb|CAL34745.1| putative OmpA family membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925860|gb|ADC28212.1| putative OmpA family membrane protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315928819|gb|EFV08086.1| ompA family protein [Campylobacter jejuni subsp. jejuni 305] Length = 317 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ Q + ++T Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + KDL + D + +K+ L L K+ ++ Q +K+ + GL+ Sbjct: 102 NYKQLSKDLNSTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156 Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256 +N+ K + + I+I ++ + +FDK S + E L+KI Sbjct: 157 ENLSKELQSKLDNN---ITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213 Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309 ++ ++ I I GHTD+ N LS RAY + S+ ++ Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269 Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + +RRI+I Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297 >gi|58422903|gb|AAW73251.1| OmpA [Serratia sp. MF 416] Length = 225 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + + PE L ++ L+ + + G TDA A N RLS RA Sbjct: 119 LFAFNKATLKPEGQHALDQLYTQLSSLDPKDGSVVVLGFTDAV---GSAEYNLRLSEQRA 175 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 S L+ G+ D+IS G Sbjct: 176 QSVVDYLISKGIPSDKISA-RGMGKANPITGD 206 >gi|54302262|ref|YP_132255.1| putative outer membrane protein [Photobacterium profundum SS9] gi|46915683|emb|CAG22455.1| putative outer membrane protein [Photobacterium profundum SS9] Length = 196 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + +F S+ + +Q++ + L E I ++G+ ASP N N LS Sbjct: 70 ENDVRVLFANDSAAIPEAFLSEIQRMADFLEIYPETYIELKGY--ASPVGNAEY-NIGLS 126 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334 RA + L+ GV+ RI I GF A S+ N+ +RR+ Sbjct: 127 KRRATKVREQLIAEGVAPQRIKTI-GFGDAEPIAAESSEATNTLSRRV 173 >gi|197335718|ref|YP_002155279.1| outer membrane protein [Vibrio fischeri MJ11] gi|197317208|gb|ACH66655.1| outer membrane protein [Vibrio fischeri MJ11] Length = 219 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F+ + +LQ + E L + + + GHTD + N L L R+ Sbjct: 111 RVLFNFDQYSLTERSKYILQNVTEKLETQKDTVLLNGHTDN---KGRDNYNINLGLARSN 167 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 S L+ G S++++ S F + + + NRR+DI Sbjct: 168 SVKAFLLDQGASKEQLESYS-FGEQQPIDDNTTLEGQHHNRRVDI 211 >gi|148546407|ref|YP_001266509.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148510465|gb|ABQ77325.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 16/213 (7%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+ + K+++T + K +S+ ++ KI + Sbjct: 36 PFGSDKVAEQEVKSAVTENVAKADAKSESSSRWWWPFGGDDKQAKGPVVPKIDQKATQAW 95 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + K+ + + + + T + + + P ++ LP ++ Sbjct: 96 LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 146 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + ++ + + + + + GH D+ A N +LSL+RA S + SG+ DR++ Sbjct: 147 ITRVAKTVEGDPKTAVLVLGHADS---SGAAVANQKLSLERAASVSAIFRLSGLQRDRLT 203 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + G + A+D + NRR+++L+ + Sbjct: 204 -LKGMGSVMPRAANDSAEGRALNRRVEMLLTPQ 235 >gi|332560366|ref|ZP_08414688.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N] gi|332278078|gb|EGJ23393.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides WS8N] Length = 701 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 FD S+ P+ L +G+ +A EV I GHTDA A N LS R Sbjct: 588 FDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAASNLALSDRR 644 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S L + V + + + G+ L++ SD NRR+ + Sbjct: 645 AESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 689 >gi|254507025|ref|ZP_05119163.1| outer membrane protein [Vibrio parahaemolyticus 16] gi|219550020|gb|EED27007.1| outer membrane protein [Vibrio parahaemolyticus 16] Length = 204 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLS 288 +++ +F S P ++ + E L + + I I+G AS + N LS Sbjct: 78 ERQLRILFANDSYEINPIFSDQIKTMAEFLQKYQSASIQIQGF--ASKVGSPEY-NLALS 134 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 RA++ L+ V R+ I G+ RL+ + ++ NR++ Sbjct: 135 RKRAHAVQDELISFDVDPSRV-SIVGYGETRLEAEGDDETSHALNRKVT 182 >gi|114765730|ref|ZP_01444828.1| peptidoglycan-associated lipoprotein [Pelagibaca bermudensis HTCC2601] gi|114541947|gb|EAU44982.1| peptidoglycan-associated lipoprotein [Roseovarius sp. HTCC2601] Length = 174 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 + +F S PE L L +++ ++ I GH D N L R Sbjct: 64 DRVLFLVDQSSLTPEAQATLDAQAGWLMTNSDYLAVIEGHADEQ---GTREYNIALGARR 120 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337 A + + L+ GV+ +R+ IS + R + + + NRR + ++ Sbjct: 121 ANATMEYLISKGVAPNRLKIIS-YGKERPVEICSEESCYAKNRRAVTVI 168 >gi|39934198|ref|NP_946474.1| OmpA/MotB [Rhodopseudomonas palustris CGA009] gi|192289724|ref|YP_001990329.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris TIE-1] gi|39648046|emb|CAE26566.1| omp16 protein [Rhodopseudomonas palustris CGA009] gi|192283473|gb|ACE99853.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris TIE-1] Length = 165 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ S P+ L K + L + +I GH D R N L R Sbjct: 57 DRVFFESDQSDLSPQAAATLDKQVQWLQTYSRYTFTIEGHADE---RGTREYNIALGARR 113 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L+ G+ R+ IS + R + ++ S NRR Sbjct: 114 AQSVRNYLVSRGIDAQRMRTIS-YGKERPVAVCNDISCWSQNRR 156 >gi|8928233|sp|Q9S3P9|MOTY_VIBAN RecName: Full=Sodium-type flagellar protein motY; AltName: Full=Polar flagellum motor protein; Flags: Precursor gi|5802659|gb|AAD51752.1|AF176946_1 polar flagellum motor protein [Listonella anguillarum] Length = 293 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 10/147 (6%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM-FDKSSSIPLPETIVVLQKI 255 ++I LS ++ V + + S D T + +D+ + + L +I Sbjct: 147 QRIEVALSSVLFQEKY-NVFSDCVSNLLTYSFEDISFTILHYDRDNVQLNKASQKRLAQI 205 Query: 256 GEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + + +++ + +TD+ R +++ LS RA G+ EDRI ++ Sbjct: 206 ADYIRYNQDIDLVLVSTYTDSVDSRGVSQ---DLSERRAEVLRDYFKSLGLPEDRI-QVQ 261 Query: 314 GFAHHRLKIASDP--MNSANRRIDILV 338 G+ R + NRR+ I + Sbjct: 262 GYGKRRPIADNASPIGKDKNRRVVISL 288 >gi|209695330|ref|YP_002263259.1| sodium-type flagellar protein MotY precursor [Aliivibrio salmonicida LFI1238] gi|208009282|emb|CAQ79548.1| sodium-type flagellar protein MotY precursor [Aliivibrio salmonicida LFI1238] Length = 292 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FDK+S + L +I + + ++ ++ + + +TD+ N ++S RA Sbjct: 186 FDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDS---SGAKNVNQQVSERRAVK 242 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G+ DRI ++ + R + + NRR+ I + Sbjct: 243 LQNYFESIGLPADRI-RVHSYGERRPIADNSTPIGKNKNRRVVISL 287 >gi|134095585|ref|YP_001100660.1| putative peptidoglycan-associated lipoprotein (pal) [Herminiimonas arsenicoxydans] gi|133739488|emb|CAL62539.1| putative peptidoglycan-associated lipoprotein precursor pal-like [Herminiimonas arsenicoxydans] Length = 167 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE V+ + L ++ T I I+G+TD R A N L RA + Sbjct: 67 FDYDSYVVKPEYQQVVANHAKYLQSNRTRKIIIQGNTDE---RGGAEYNLALGQKRAEAV 123 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + L GV E ++ +S G + + + + NRR DI+ Sbjct: 124 RKSLSLLGVPESQMEAVSLGKEKPKALGSDEAAWAENRRADIV 166 >gi|332304548|ref|YP_004432399.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171877|gb|AEE21131.1| OmpA/MotB domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 368 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 229 IDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 +++ +F +SS ++ + I G+ AS + W L Sbjct: 249 VEETLRILFANNSSEIANRANSDIRDFAAFMKRFPSTDTVIEGY--ASAPGESDYNQW-L 305 Query: 288 SLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPMNS--ANRRI 334 S +RA + VL++ + RI+ + G+ +L A + NRRI Sbjct: 306 SEERAKAVRMVLIEDYDIKPARITAV-GYGESKLLDAPTAKEANKINRRI 354 >gi|327399144|ref|YP_004340013.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411] gi|327181773|gb|AEA33954.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411] Length = 188 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + +L +I +L H T + I G+ D R N L RA +A + L+ Sbjct: 92 INEKPKAILDRIAAFMLKHPTLKVRIEGNCDE---RGTVEYNLALGQKRALAAKKYLVAK 148 Query: 303 GVSEDRISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDR 341 GV+ DRI IS + R + + + NRR ++ +R Sbjct: 149 GVNPDRIDIIS-YGESRPLDPAHNEYAWAKNRRDHFVLLER 188 >gi|325955198|ref|YP_004238858.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] gi|323437816|gb|ADX68280.1| OmpA/MotB domain protein [Weeksella virosa DSM 16922] Length = 753 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 13/109 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ SI L K+ +L + I GHTDA N LS RA++ Sbjct: 643 FNFDQSIIRDHDFSFLDKLALLLVDNPTVNFIIEGHTDA---AGTESYNLTLSEKRAFAV 699 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-DP-------MNSANRRIDI 336 Q L GV R+ I G +K P N NRR+ I Sbjct: 700 AQYLEGKGVDFSRMH-ILGIGTSAMKYPECKPVEMCEEWKNFENRRVVI 747 >gi|313497490|gb|ADR58856.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 84/213 (39%), Gaps = 16/213 (7%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+ + K+++T + K +S+ ++ KI + Sbjct: 36 PFGSDKVAEQEVKSAVTENVAKADAKSESSSRWWWPFGGDDKQAKGPVVPKIDQKATQAW 95 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + K+ + + + + T + + + P ++ LP ++ Sbjct: 96 LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 146 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + ++ + + + + + GH D+ A N +LSL+RA S + SG+ DR++ Sbjct: 147 ITRVAKTVEGDPKTAVLVLGHADS---SGAAVANQKLSLERAASVSAIFRLSGLQRDRLT 203 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + G + A+D + NRR+++L+ + Sbjct: 204 -LKGMGSVMPRAANDSAEGRALNRRVEMLLTPQ 235 >gi|221638345|ref|YP_002524607.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides KD131] gi|221159126|gb|ACM00106.1| OmpA/MotB domain protein precursor [Rhodobacter sphaeroides KD131] Length = 696 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 FD S+ P+ L +G+ +A EV I GHTDA A N LS R Sbjct: 583 FDTGSAAIDPDEAEKLASLGQTIADMIAERPEEVFLIEGHTDAV---GDAASNLALSDRR 639 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S L + V + + + G+ L++ SD NRR+ + Sbjct: 640 AESVALALTEYFDVPPENMV-VQGYGEEDLRVDSDGPEQRNRRVAV 684 >gi|187924070|ref|YP_001895712.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] gi|187715264|gb|ACD16488.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 204 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ PE+ +QK+ VLA + + GHTD N RLS+ RA + Sbjct: 103 LFDSAT-ELAPESAATVQKLKTVLATWPAPQLVVVGHTD---LAGSQEFNDRLSMQRAQT 158 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVE 339 L+K G+ RI + + + NRR I ++ Sbjct: 159 VAAFLIKQGIPAQRIETAA-RGKREPLVPTADGVPHRMNRRAVITIQ 204 >gi|91794083|ref|YP_563734.1| OmpA/MotB [Shewanella denitrificans OS217] gi|91716085|gb|ABE56011.1| OmpA/MotB [Shewanella denitrificans OS217] Length = 373 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 + +FD SS+ P ++ + L + I GH AS N LS Sbjct: 256 DLGSILFDNDSSVIKPGAYSDVEILVSHLEKYPQHTVVIEGH--ASNVGTPDY-NLLLSE 312 Query: 290 DRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 RA + ++ ++ RI + G+ + ++A + + NRRI+ +V Sbjct: 313 RRANAVAALVTSKYKINGSRIKSV-GYGLTKPQMAGNSAEAHRLNRRIEAIV 363 >gi|91978605|ref|YP_571264.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91685061|gb|ABE41363.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 165 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 12/134 (8%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +GL AD + ++ ++++ D F+ + P+ L K + L + Sbjct: 31 TGLGADGAMASAATPGSQQDFVVNVGD---RVFFESDQTELSPQAAATLDKQAQWL-QTY 86 Query: 264 EV--ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +I GH D R N L RA S L G+ R+ IS + R Sbjct: 87 NRYSFTIEGHADE---RGTREYNIALGARRAQSVRNYLSSRGIEPSRMRTIS-YGKERPV 142 Query: 322 IASDPMN--SANRR 333 + ++ S NRR Sbjct: 143 AVCNDISCWSQNRR 156 >gi|330966520|gb|EGH66780.1| ompA family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 320 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 98 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 214 RALNRRVEILMTPQ 227 >gi|330446544|ref|ZP_08310196.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490735|dbj|GAA04693.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS L + L I + GHTD+ R N +LS RA + Sbjct: 210 FAFDSSTITAGDAAKLAPFEQRLKDQGAAQIYVIGHTDS---RGSEAYNQKLSEKRAQAV 266 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDIL 337 L + V E RI G ++ + + NRR+DI+ Sbjct: 267 ADALRQHLNVGETRIIA-QGRGESDPVASNQTEEGRAQNRRVDII 310 >gi|296284884|ref|ZP_06862882.1| outer membrane protein [Citromicrobium bathyomarinum JL354] Length = 210 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 13/116 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + + L + + E + +RGH+DA R N R+S +RA + Sbjct: 63 FGAGGTELDETAMAELNGLLDTDQWKQVERVILRGHSDA---GGPDRVNMRVSEERAQAV 119 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--------IASDPMNSANRRIDILVEDRQG 343 LM+ G++ED+I +I F ++ +ANRR++I + +G Sbjct: 120 ADWLMEQGLTEDQI-RIIAFGAQNPVQPNLLPNGEPNERGRAANRRVEITILVPKG 174 >gi|294669045|ref|ZP_06734131.1| putative cytochrome c oxidase, subunit II [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309037|gb|EFE50280.1| putative cytochrome c oxidase, subunit II [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 241 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + P L+ + V A + I + G+ D++ A+ N LS RA++ Sbjct: 149 FATGKADVAPGAQEALKDVL-VAALGGKKIVVSGYHDST---GNAQVNEELSKQRAFAVR 204 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 VL+ GV + +I + + RR+++ VE Sbjct: 205 TVLLGFGVPDKQIEL------RKPSDTEAGSGAEARRVEVFVE 241 >gi|149186387|ref|ZP_01864700.1| hypothetical protein ED21_22898 [Erythrobacter sp. SD-21] gi|148829976|gb|EDL48414.1| hypothetical protein ED21_22898 [Erythrobacter sp. SD-21] Length = 288 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 12/170 (7%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 S + AM R Q A+ + + A +KG + + + F Sbjct: 123 ASDMETAAMIRGATQQQFAEHRADIDANAAAAEALKGRMANIDQYNVR-----GVTNVYF 177 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAY 296 D PE + I + + G+TD+ N LS RA Sbjct: 178 DSGKWNISPEGQREICDIASQAEAMDNALLLVVGYTDSD---GNEDYNQVLSERRAGRVV 234 Query: 297 QVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L + G R+ +G + + + NRR+ + + + Sbjct: 235 NYLQQKCGWQPWRMLTPTGMSESDPAADNSTPEGKAQNRRVSVNILVSKA 284 >gi|301597288|ref|ZP_07242296.1| OmpA/MotB domain protein [Acinetobacter baumannii AB059] Length = 216 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 14/113 (12%) Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 + Q L + S L + + ++ + II+ F+ S++ Sbjct: 117 QSFQSLVQPPYQLFSQLSVNQAEQKII----DDALKNRIIE------FESGSAVLTEAGQ 166 Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +L ++ L + I GHTD+ A N +LS DRA + L+ Sbjct: 167 KILDEMAVALNKVGGKKVKIVGHTDS---SGDATKNLKLSQDRALAVKNYLIS 216 >gi|283782103|ref|YP_003372858.1| OmpA/MotB domain-containing protein [Pirellula staleyi DSM 6068] gi|283440556|gb|ADB18998.1| OmpA/MotB domain protein [Pirellula staleyi DSM 6068] Length = 261 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 7/132 (5%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHT 272 + R G +I F + S+ + V L E A + I +RGHT Sbjct: 102 ENQHVRIVRPGDRTTI---GTVVYFSEDSATLSEDAEVDLLGAAETFAGKPQKIELRGHT 158 Query: 273 -DASPFR-NIARDNWRLSLDRAYSAYQVLMKS-GVSEDRIS-KISGFAHHRLKIASDPMN 328 +P ++ +DNW L+ R+ + VL+ + RI ++G Sbjct: 159 SRGTPAADSVFKDNWELAYKRSLAVMHVLVDRMKIDPKRIRISVAGPFEPVHTGIDPEKL 218 Query: 329 SANRRIDILVED 340 N R+++ + + Sbjct: 219 KQNPRVEVFLLE 230 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 19/224 (8%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDD-DTKKAIEQYFNP--FGKNLMTAS 80 +D P + W + + D M++L+ FF+++ ++ D + + + + M+ Sbjct: 5 EDPPAGIPEWVVTFGDMMSLLLTFFILLASMSEIKQNDKFQGVADSMHEQFGYDSSMSHV 64 Query: 81 KGIFDEQNPP-------ERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFY 133 G +N R+ + K+ + + + + F Sbjct: 65 PGEMSPRNSSMAAMALTGRAKRAKVVQGGVKSKGTTGENQHVRIVRPGDRTTIGTVVYFS 124 Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK---- 189 ++ SE + L +E + +L ++ LA KR Sbjct: 125 EDSATLSEDAEVDLLGAAETFAGKPQKIELRGHTSRGTPAADSVFKDNWELAYKRSLAVM 184 Query: 190 ----KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISII 229 R++ K+I +++G + + G+ E + + + Sbjct: 185 HVLVDRMKIDPKRIRISVAGPF-EPVHTGIDPEKLKQNPRVEVF 227 >gi|75676898|ref|YP_319319.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74421768|gb|ABA05967.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 167 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ I L+K L +I GH D R N L R Sbjct: 59 DRVFFESDQTSLSPQAITTLEKQAHWLQTYHRYSFTIEGHADE---RGTREYNIALGARR 115 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G+ R+ IS + R + ++ S NRR Sbjct: 116 AQSVRSFLASRGIDPSRMRTIS-YGKERPVAVCNDISCWSQNRR 158 >gi|329849877|ref|ZP_08264723.1| ompA family protein [Asticcacaulis biprosthecum C19] gi|328841788|gb|EGF91358.1| ompA family protein [Asticcacaulis biprosthecum C19] Length = 254 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI--SIRGHTDASPFRNIARDNWRLSL 289 F S+ ++ +L I + + + S+ G+TD DN +LS Sbjct: 139 DRRLQFISGSAELTGDSQAILIDIYNTIQTCPQNLALSVEGYTDNV---GQDNDNMKLST 195 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 RA +A L+ G+++ +S G+ + + + NRR+D ++ R Sbjct: 196 ARAEAAAFALIDLGLAQASVSS-RGYGAQNPIADNTSEDGRARNRRVDFILRPR 248 >gi|308126356|ref|ZP_07663725.1| OmpA family protein [Vibrio parahaemolyticus AQ4037] gi|308109333|gb|EFO46873.1| OmpA family protein [Vibrio parahaemolyticus AQ4037] Length = 290 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F L + L+ + I GH D N +S RA Sbjct: 162 FQFGQKTLNATQQQTLAALYSYLSVDDRVTKVLIDGHADNV---GPRLTNLSVSRLRAQQ 218 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L+ GV+ + I ++ ++ + NRR+ + Sbjct: 219 VADALIAHGVNPN-IIEVRSHGDRYPVANNNTAAGQAKNRRVTL 261 >gi|297537840|ref|YP_003673609.1| OmpA/MotB domain-containing protein [Methylotenera sp. 301] gi|297257187|gb|ADI29032.1| OmpA/MotB domain protein [Methylotenera sp. 301] Length = 261 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 11/105 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + L + L + I G++D R N LS RA + Sbjct: 166 FDTGKTTLPSDASQTLAATIKWLKAYSSMKAVISGYSDP---RGDLAKNEELSKSRAKAV 222 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVE 339 ++L +G+ EDRI + +I + A RR+++ +E Sbjct: 223 REMLEDAGIDEDRIEM------RKPEIVESGGDLGAARRVEVSIE 261 >gi|188997203|ref|YP_001931454.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932270|gb|ACD66900.1| OmpA/MotB domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 260 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 103/284 (36%), Gaps = 32/284 (11%) Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITK-NSVDLKIGSTN 119 KK I F ++ + +F EQN Q + D ++H + + + I + Sbjct: 2 KKKIITSTF------ILAFTSNVFAEQNVDMSKIQERFDKLKEKHALECSPEEYGILESY 55 Query: 120 QKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLS 179 + ++ L + E + ++ KD ++ + Sbjct: 56 LESIKIENNQSVDSLRLITKIEDLLTKIKKNINSDKDNDGIPCYKEIELGLNPKIPDAIE 115 Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 K KI K+ ++L AK+ S + D I + V F Sbjct: 116 KAKIAQNKKPEKLDIGAKEKESPKTYKSTDAITQPVRVH------------------FYL 157 Query: 240 SSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 +SS E + L + + L + I+G+TD + ++ +L+L RA + Q Sbjct: 158 NSSKIKKEYLPYLNIVAKYLKTHPDVKVKIKGYTDN--IGSKKYND-KLALKRAKTVKQY 214 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 L+K GVS +RI I G ++++ NRR + + + Sbjct: 215 LVKLGVSPNRIM-IDGVGKSEYIVSNNNELDRFTNRRAEFYIIN 257 >gi|259416355|ref|ZP_05740275.1| outer membrane protein, OmpA/MotB family [Silicibacter sp. TrichCH4B] gi|259347794|gb|EEW59571.1| outer membrane protein, OmpA/MotB family [Silicibacter sp. TrichCH4B] Length = 624 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-----VISIRGHTDASPFRNIARDNWRLSLDR 291 F+ SS+ PE L +G L + V I GHTDA A N LS R Sbjct: 512 FETGSSVIRPEQAEELTDLGNALRQMVDTNPTEVFLIEGHTDAV---GAATYNLALSDRR 568 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A + L + V + + I G+ L + ANRR+ + Sbjct: 569 AETVALALTEYFDVPPENMV-IQGYGESDLAVPVLDAERANRRVTV 613 >gi|149377601|ref|ZP_01895340.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] gi|149358143|gb|EDM46626.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Marinobacter algicola DG893] Length = 148 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 243 IPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 + + +L++ L H+ V + I GH D F +++ LS RA SA +VL++ Sbjct: 48 RLDEQDLAILRQHALYLRHNPGVTVRIHGHADN--FGVSEYNHF-LSRLRASSAAKVLIR 104 Query: 302 SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 GV E ++ +SG+ R + ++ANRR+++ Sbjct: 105 EGVRESQVL-VSGWGSDRPLARPE-DHAANRRLEL 137 >gi|21223388|ref|NP_629167.1| secreted protein [Streptomyces coelicolor A3(2)] gi|8218177|emb|CAB92608.1| putative secreted protein [Streptomyces coelicolor A3(2)] Length = 203 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 19/186 (10%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 D T+ S E + P L + + K L I S + D + Sbjct: 27 AADDPPGTEPSASAPVEVDPNDPDLKLPDGATLAQAKVLD-----IKSVVEEQSGDERRE 81 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHT 272 T + + +F K SS E ++ I E+ + + + G T Sbjct: 82 DTNTSVT--------LALQAEVLFGKDSSKLGAEAKSRIRGIADEIRTQNATRVRVFGFT 133 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-- 330 D + D LS RA + + VL +S ++ G+ + Sbjct: 134 DDL-GSSAHGDV--LSKRRANAVHDVLSQSLNDAGITYEVRGYGEQYPIADNSTEAGRKK 190 Query: 331 NRRIDI 336 NRR+++ Sbjct: 191 NRRVEV 196 >gi|320095241|ref|ZP_08026939.1| outer membrane protein OprF [Actinomyces sp. oral taxon 178 str. F0338] gi|319977825|gb|EFW09470.1| outer membrane protein OprF [Actinomyces sp. oral taxon 178 str. F0338] Length = 174 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S VL + E +++ GHTD+ N LS RA + Sbjct: 73 FEVDSDQLTARAKEVLDSLASEWSKAKPSTVTVTGHTDSVA---DDAHNLDLSKRRAKAV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 L +G G ++ + NRR++I Sbjct: 130 GDYL--AGKVPGLSLTTDGKGEAEPIGDNETEEGRAQNRRVEI 170 >gi|299067718|emb|CBJ38927.1| Peptidoglycan-associated lipoprotein, protein pal, component of tol-pal system [Ralstonia solanacearum CMR15] Length = 171 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE +L + L +H+ + I+G+TD R + N L RA + Sbjct: 71 FDFDSYAVKPEYQGLLTQHAHYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 127 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + L GV + ++ +S G + + + NRR DI+ Sbjct: 128 RRALSSLGVPDSQMESVSLGKEKPQASGHDEESWAQNRRSDIV 170 >gi|332669626|ref|YP_004452634.1| OmpA/MotB domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338664|gb|AEE45247.1| OmpA/MotB domain protein [Cellulomonas fimi ATCC 484] Length = 517 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 15/262 (5%) Query: 83 IFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEH 142 +F+ + P S +D + V + +++ Sbjct: 89 VFENLSSPGPSGVRLVDTE------EGVVRPVARDELDRAVMSGNSTPGGPATDAGDEAA 142 Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 + + + D + + + + P +L + ++ + Sbjct: 143 DGDEVVYAAFAAPDAGRVDVMLPQGGWVADVPVVPADDAGVLTVPPEELAEGGVADAPVV 202 Query: 203 LSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS 262 + + V T + + + +F S + PE L + Sbjct: 203 PLEAYTEVVGGTVRARQTPEAVTVQVASD---VLFAVDSDLLGPEAEAALAAAAAQVTAY 259 Query: 263 TEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 +++ GHTD + A N LS RA + L + + + Sbjct: 260 PGGTLTVVGHTDD--VADDAY-NLDLSQRRAATVAARLAQVADLSGFDVTVDAKGESQPA 316 Query: 322 IA--SDPMNSANRRIDILVEDR 341 +A S + NRR++I++ + Sbjct: 317 VAGTSPDARALNRRVEIVLVPQ 338 >gi|283954121|ref|ZP_06371646.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794400|gb|EFC33144.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 414] Length = 317 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 118/322 (36%), Gaps = 54/322 (16%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNRQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ Q+ E S Q S+ ++L Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANS------QKAELEANITSYKQLSKDLNSTLD 115 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 K + ++++ L L ++ A ++ + L + + +S L + Sbjct: 116 NKD-------KQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLSKELQSKLD 168 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-----------E 257 +NI + E T + IS+ +FDK S + E L+KI + Sbjct: 169 NNIT---IDEKTGS---ISL---PAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPK 219 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGF 315 +L++ I I GHTD+ N LS RAY + S+ ++ SG Sbjct: 220 ILSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGR 275 Query: 316 AHHRLKIASDPMN-SANRRIDI 336 + + + +RRI+I Sbjct: 276 SFSDPVFLNGVEDKDKSRRIEI 297 >gi|257092704|ref|YP_003166345.1| OmpA/MotB domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045228|gb|ACV34416.1| OmpA/MotB domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 221 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 16/113 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD + + PE L ++ + I GHTD + A N +LS RA + Sbjct: 107 LFDFNKATLRPEGKAKLDEVVAKAGAIKLEVIIAVGHTD--RIGSDAY-NQKLSERRAAA 163 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP----MNSA-------NRRIDI 336 Q L+ G+ +R+ G D + +RR+DI Sbjct: 164 VKQYLVSKGIDANRVY-TEGKGKKNPVTKPDQCLGKTSPKVIACLQPDRRVDI 215 >gi|4704601|gb|AAD28174.1|AF104303_1 fibronectin binding protein [Campylobacter jejuni] Length = 287 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 206 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 262 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK 321 L K GV + RI + G+ + Sbjct: 263 ANELEKYGVEKSRIKTV-GYGQDNPR 287 >gi|4704599|gb|AAD28173.1|AF104302_1 fibronectin binding protein [Campylobacter jejuni] Length = 287 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P +++I +VL + +I GHTD + A N +LS RA S Sbjct: 206 FGFDKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDN--IGSRAY-NQKLSERRAKSV 262 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK 321 L K GV + RI + G+ + Sbjct: 263 ANELEKYGVEKSRIKTV-GYGQDNPR 287 >gi|115526690|ref|YP_783601.1| OmpA/MotB domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520637|gb|ABJ08621.1| OmpA/MotB domain protein [Rhodopseudomonas palustris BisA53] Length = 165 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 + F+ + P+ I L+K + L +I GH D R N L R Sbjct: 57 DRVFFESDQTDLSPQAIATLEKQAQWLQQYNRYAFTIEGHADE---RGTREYNIALGARR 113 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L G+ R+ IS + R + ++ S NRR Sbjct: 114 AQSVRSYLASRGIDASRMRTIS-YGKERPVAVCNDISCWSQNRR 156 >gi|330878862|gb|EGH13011.1| ompA family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 320 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 98 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 157 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PM 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 158 GHADT---SGPTEGNQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLEG 213 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 214 RALNRRVEILMTPQ 227 >gi|126725971|ref|ZP_01741813.1| OmpA family protein [Rhodobacterales bacterium HTCC2150] gi|126705175|gb|EBA04266.1| OmpA family protein [Rhodobacterales bacterium HTCC2150] Length = 224 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ LQ+ + + GHTD R N RL L RA S Sbjct: 77 FAFNSAKLDGAAQATLQQQATWIRQFPEVRFRVYGHTD---LVGGNRFNKRLGLRRAQSV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + G+ DR+ ++ F + + + NRR Sbjct: 134 VNFFISQGIGRDRLEAVASFGEEQPIVFTQTEERQNRR 171 >gi|300870375|ref|YP_003785246.1| peptidoglycan-associated lipoprotein [Brachyspira pilosicoli 95/1000] gi|300688074|gb|ADK30745.1| outer membrane protein, peptidoglycan-associated lipoprotein [Brachyspira pilosicoli 95/1000] Length = 202 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSS 241 ++ + + + ++ ++ + +G ++ G + + +F + Sbjct: 26 EMAPAENAEPVALAVQEEPQAVANTGELYLPQGTSIRDSQRG---RVFETNPKIIFGFAK 82 Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + V ++ E L + + + GHT N+ LS++R +A L+ Sbjct: 83 TTMPANANVAFAQVIEFLDKNPNVRLVVEGHTSNKGI--AYPYNYNLSVNRVKNARAYLV 140 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMN--SAN-RRIDILVEDRQG 343 +GV +R+ + + + P + AN RR + ++ + Q Sbjct: 141 NNGVDANRLIE-------KPLGEALPESNVQANLRRYEFIIIENQA 179 >gi|302532142|ref|ZP_07284484.1| type VI secretion system OmpA/MotB [Streptomyces sp. C] gi|302441037|gb|EFL12853.1| type VI secretion system OmpA/MotB [Streptomyces sp. C] Length = 214 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 ++ +F K S+ + ++ E+ +S + + G TD + LS Sbjct: 102 QSEVLFAKDSAELSGAAGARIAEVAQEIRQNSPRKVMVCGFTDNLGTYAHGKT---LSTQ 158 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 RA + ++ L + ++ G + +++ NRR++I Sbjct: 159 RAEAVHKALAAQLSASGIAYEVVGKSEDDPIADNSTEEGRKKNRRVEI 206 >gi|197337853|ref|YP_002158755.1| outer membrane protein [Vibrio fischeri MJ11] gi|197315105|gb|ACH64554.1| outer membrane protein [Vibrio fischeri MJ11] Length = 322 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL-SLDRAYSAYQVLMKSGVSEDRISK 311 ++ + +SI G+TDA + N + SL RA A +L+K+GV E+RI Sbjct: 232 NELALSVKQGQGKVSITGYTDA---KGTDSAN-DIESLRRATYAADMLIKAGVDEERIL- 286 Query: 312 ISGFAHHRLKIASDPMN---SANRRIDILVEDRQG 343 I+ + D M + NRR+ I R G Sbjct: 287 INSKGSADPLVNEDLMRNESALNRRVVIQFNRRVG 321 >gi|59714283|ref|YP_207058.1| outer membrane protein A [Vibrio fischeri ES114] gi|59482531|gb|AAW88170.1| outer membrane protein A [Vibrio fischeri ES114] Length = 324 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 253 QKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL-SLDRAYSAYQVLMKSGVSEDRISK 311 ++ + +SI G+TDA + N + SL RA A +L+K+GV E+RI Sbjct: 234 NELALSVKQGQGKVSITGYTDA---KGTDSAN-DIESLRRATYAADMLIKAGVDEERIL- 288 Query: 312 ISGFAHHRLKIASDPMN---SANRRIDILVEDRQG 343 I+ + D M + NRR+ I R G Sbjct: 289 INSKGSADPLVNEDLMRNESALNRRVVIQFNRRVG 323 >gi|190892104|ref|YP_001978646.1| outer membrane protein, OmpA family [Rhizobium etli CIAT 652] gi|190697383|gb|ACE91468.1| putative outer membrane protein, OmpA family [Rhizobium etli CIAT 652] Length = 722 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ L+K+ + ++ +E I GHTDA + N LS R Sbjct: 607 FATGSAEIPMTQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 663 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S VL G+ + + G+ LK+ + NRR+ I Sbjct: 664 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTAGPEQENRRVTI 708 >gi|229591316|ref|YP_002873435.1| putative phosphate-related ABC transporter exported protein [Pseudomonas fluorescens SBW25] gi|229363182|emb|CAY50235.1| putative phosphate-related ABC transport system, exported protein [Pseudomonas fluorescens SBW25] Length = 443 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F++ S+ + LQ++ + + +++ G DA P R LS R Sbjct: 342 FEEGSASLDNKARQDLQRVVAYIKSHDKLDKQVTLVGFGDAKNDPQRAAL-----LSKLR 396 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A + + L+KSGV + +I GF A+ D NRR+++ V Sbjct: 397 AMAVRRELVKSGVV---LREIRGFGAQMPVAANTADEGRIKNRRVEVWV 442 >gi|218440795|ref|YP_002379124.1| OmpA/MotB domain protein [Cyanothece sp. PCC 7424] gi|218173523|gb|ACK72256.1| OmpA/MotB domain protein [Cyanothece sp. PCC 7424] Length = 222 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 21/129 (16%) Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 L ++ K K+ + L KI L+ + ++ + ++ T + N + Sbjct: 46 QLLHKQDELQKYKEAIDQLPVKIIKALNETIPNSGI--IVHPETGD------VSLDNRIL 97 Query: 237 FDKSSSIPLPETIVVLQKIGEV----------LAHSTEVISIRGHTDASPFRNIARDNWR 286 FD+ S+ PE LQ+ + L + I GHT + + DN Sbjct: 98 FDEGSASLKPEGKQFLQQFIPIYSQHIFSNTLLDQQIIRVIIEGHTSS---KGSDSDNME 154 Query: 287 LSLDRAYSA 295 LSL RA S Sbjct: 155 LSLRRALSV 163 >gi|327189348|gb|EGE56516.1| putative outer membrane protein, OmpA family [Rhizobium etli CNPAF512] Length = 722 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ L+K+ + ++ +E I GHTDA + N LS R Sbjct: 607 FATGSAEIPMAQARTLRKVADAISQVLKKDPSETFLIEGHTDAV---GSDQSNLVLSDQR 663 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S VL G+ + + G+ LK+ + NRR+ I Sbjct: 664 AESVANVLSDVYGIPPENM-ATQGYGERYLKVNTAGPEQENRRVTI 708 >gi|224418309|ref|ZP_03656315.1| putative flagellar motor protein [Helicobacter canadensis MIT 98-5491] gi|253827631|ref|ZP_04870516.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491] gi|253511037|gb|EES89696.1| flagellar motor protein MotB [Helicobacter canadensis MIT 98-5491] Length = 276 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 13/193 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKE-------KILAMKRKKRLQDLAKKISSTLSGLVA 208 D K T+ E SI + + E + + + K+ S + Sbjct: 42 DAKKLTEAEGSIRGSLSVLSGGIKIEESRNRILQQADITTDPETAEQIIKVQSEILEFKE 101 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTE--V 265 D V G I+ +FD+ ++I + I+ L+++ +L + Sbjct: 102 DARVSLGPSVVEDDGKEGFILRFHGRLLFDEEKTAIENADEILFLKRLALILQKMPQTMH 161 Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322 + I G+ D + +D+ LS RA + ++L+++ V+ +I+ + G A + L Sbjct: 162 LDIIGYADNVEGKPNLKYQDSLGLSALRASNVAKILIENQVNPQKITSLGGGATNFLLPN 221 Query: 323 ASDPMNSANRRID 335 + + NRR++ Sbjct: 222 TNAENRAQNRRVE 234 >gi|167765428|ref|ZP_02437541.1| hypothetical protein BACSTE_03818 [Bacteroides stercoris ATCC 43183] gi|167697056|gb|EDS13635.1| hypothetical protein BACSTE_03818 [Bacteroides stercoris ATCC 43183] Length = 396 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTP---MF 237 + I A++ Q +A+ ++ A + E T ++++ D P F Sbjct: 241 QLISALELSAMQQQIAEMAAANQQLESALTAAQNKPMEVAETEVVVT--DPNIAPRTVFF 298 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 S+ P ++ + + + + ++ G+ D++ N LSL RA + Sbjct: 299 KIGSAEVSPREVMNISYLAKQMQEFPNTTYTVNGYADSA--TGTPEFNKELSLKRAQAVV 356 Query: 297 QVLMKS-GVSEDRI 309 VL+K G+ +R+ Sbjct: 357 DVLVKDYGIPANRL 370 >gi|86151560|ref|ZP_01069774.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|121613602|ref|YP_001000300.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|167005251|ref|ZP_02271009.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|315124117|ref|YP_004066121.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841189|gb|EAQ58437.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|87250368|gb|EAQ73326.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|315017839|gb|ADT65932.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 317 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 117/322 (36%), Gaps = 54/322 (16%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ + + + N Q S+ ++L Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN------YKQLSKDLNSTLD 115 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 K + ++++ L L ++ A ++ + L + + +S L + Sbjct: 116 NKD-------KQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGFIRENLSKELQSKLD 168 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-----------E 257 +NI + E T + IS+ +FDK S + E L+KI + Sbjct: 169 NNIT---IDEKTGS---ISL---PAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPK 219 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGF 315 + ++ I I GHTD+ N LS RAY + S+ ++ SG Sbjct: 220 IFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGR 275 Query: 316 AHHRLKIASDPMN-SANRRIDI 336 + + + +RRI+I Sbjct: 276 SFSDPVFVNGVEDKDKSRRIEI 297 >gi|327399143|ref|YP_004340012.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411] gi|327181772|gb|AEA33953.1| peptidoglycan-associated lipoprotein [Hippea maritima DSM 10411] Length = 172 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 7/95 (7%) Query: 250 VVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 VL I + + I I G+ D R N L RA +A + L+ GV+ DR Sbjct: 82 AVLDGIAQYMVKHPNVRIRIEGNCDE---RGTVEYNLALGQKRALAAKKYLVAKGVNPDR 138 Query: 309 ISKISGFAHHRLKIAS-DPMN-SANRRIDILVEDR 341 I IS + R + + + NRR ++ + Sbjct: 139 IDIIS-YGESRPLDPAHNEYAWAKNRRDHFVILSK 172 >gi|258545495|ref|ZP_05705729.1| outer membrane protein A (outer membrane protein II) [Cardiobacterium hominis ATCC 15826] gi|258519195|gb|EEV88054.1| outer membrane protein A (outer membrane protein II) [Cardiobacterium hominis ATCC 15826] Length = 324 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 20/118 (16%) Query: 237 FDKSS-SIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 FD+S + LPE LQ+I +T VI I G+TD P A N RLS RA Sbjct: 205 FDRSDYASILPEGKRQLQEIAAAAAQYRDATSVIYIDGYTD--PEGKPAY-NQRLSQRRA 261 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA--------NRRIDILV 338 + +V++++G + G + + +P N++ NRR++I + Sbjct: 262 QTVKRVMIENGFPAASLKA-RGHGENDPVVTGCRKRNPRNASARAACDQPNRRVEIKL 318 >gi|330443988|ref|YP_004376974.1| peptidoglycan-associated lipoprotein [Chlamydophila pecorum E58] gi|328807098|gb|AEB41271.1| peptidoglycan-associated lipoprotein [Chlamydophila pecorum E58] Length = 189 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S E + +L + + S +V + I GHTD R A N L RA + Sbjct: 85 FETDSYSIKGEENLSILTTLVHHMKKSPKVTLYIEGHTDE---RGAASYNLALGSRRANA 141 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 L+K G+S +R+ IS + + + NRR + + R Sbjct: 142 VKNYLIKQGISAERLFTIS-YGKEHPRNPGHDELAWQQNRRTEFKIYAR 189 >gi|312961750|ref|ZP_07776248.1| phosphate transport system substrate-binding protein [Pseudomonas fluorescens WH6] gi|311284009|gb|EFQ62592.1| phosphate transport system substrate-binding protein [Pseudomonas fluorescens WH6] Length = 443 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F++ S+ + L+++ L + +++ G DA P R LS R Sbjct: 342 FEEGSASLDNKARQDLRRVVAYLKGHDKLDKQVTLVGFGDAKNDPQRAAL-----LSKLR 396 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A + + L+K+GV + +I GF A+ D NRR+++ V Sbjct: 397 AMAVRRELVKNGVV---LREIRGFGAQMPVAANTADEGRIKNRRVEVWV 442 >gi|163800131|ref|ZP_02194032.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp. AND4] gi|159175574|gb|EDP60368.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp. AND4] Length = 356 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + L + ++ I + GHTD N +S RA Sbjct: 218 FQFGQKKLNASQQITLAALYSYISVDERVTKILVDGHTDNV---GSQLTNLTVSRQRAEQ 274 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 Q L++ G+ + ++ ++ + NRR+ + Sbjct: 275 VAQALIQKGMDRS-LIEVRAHGSRYPIASNKTQLGQAKNRRVTL 317 >gi|288225947|gb|ADC44458.1| OmpA [Candidatus Erwinia dacicola] Length = 324 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + N +LS Sbjct: 196 KSDVLFNFNKNTLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIDSEQY-NQKLS 252 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN---------RRIDIL 337 RA S L+ G+ +I G I S D + N RR++I Sbjct: 253 EKRAQSVVDHLVSKGIPASKIYA-RGKGKSNPIIGSTCDSVKGRNALIDCLAPDRRVEIE 311 Query: 338 VE 339 V+ Sbjct: 312 VK 313 >gi|87199040|ref|YP_496297.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444] gi|87134721|gb|ABD25463.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444] Length = 170 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 9/114 (7%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWR 286 I D N FD VLQ LA I+I GH D R N Sbjct: 62 ISDTVN---FDTDRYNIDAADQGVLQSQAAWLARYPGKAITIEGHCDE---RGTRDYNIA 115 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338 L RA SA L+ GV RI+ +S L + SD + + NRR + + V Sbjct: 116 LGERRANSAKNYLVSLGVDPGRITTVSYGKERPLALGSDEDSWAKNRRAVTVTV 169 >gi|332667957|ref|YP_004450745.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336771|gb|AEE53872.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 279 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P+ L+K+ + +A + E + + GHTD A N +L RA +L+K GV Sbjct: 186 PKVDAYLEKLAKRVAKTEERVELTGHTDN---DGEADYNLKLGASRARQIRDLLVKLGVK 242 Query: 306 EDRISKISGFAHHRLKIAS--DPMNSANRRIDILVEDR 341 D IS S + D NRR+++ + + Sbjct: 243 ADLISTAS-KGETLPVAPNTTDENRHNNRRVEVRLIKK 279 >gi|283955761|ref|ZP_06373252.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 1336] gi|283792716|gb|EFC31494.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 1336] Length = 247 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 32/190 (16%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ K+ K+ + K KEE+ L L + + + KRLQ + + VA Sbjct: 60 STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266 N+ V F++ S+ + L+++ E+ + I Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 IRG+TD S + L+ RA + + ++ G + I I + + +P Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210 Query: 327 MNSANRRIDI 336 N R++I Sbjct: 211 QALENNRVEI 220 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 IFD + ++K + S +LK Q + ++ L Sbjct: 53 ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183 S + E+G S D++ + + +LPP +K +I Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157 >gi|316932667|ref|YP_004107649.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris DX-1] gi|315600381|gb|ADU42916.1| peptidoglycan-associated lipoprotein [Rhodopseudomonas palustris DX-1] Length = 165 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ S P+ L K + L + +I GH D R N L R Sbjct: 57 DRVFFESDQSDLSPQAAATLDKQVQWLQTYARYTFTIEGHADE---RGTREYNIALGARR 113 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A S L+ G+ R+ IS + R + ++ S NRR Sbjct: 114 AQSVRNYLVSRGIDASRMRTIS-YGKERPVAVCNDISCWSQNRR 156 >gi|225849664|ref|YP_002729898.1| OmpA/MotB [Persephonella marina EX-H1] gi|225646381|gb|ACO04567.1| OmpA/MotB [Persephonella marina EX-H1] Length = 286 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 29/181 (16%) Query: 165 KSINKEENYFLPPLSKEKILAMKR--KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRT 222 + I + + F+P K L ++ +K+++ + I G + + FE Sbjct: 127 QEIEQGTDPFVPEGEKVAKLEERKTPEKKVEKEREIIEEQFEGYYPLKLHARIHFE---- 182 Query: 223 GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 FD E + L I + L + I G+TD+ + + Sbjct: 183 --------------FD--KYQIKKEYLPYLNVISKYLKSKPNLKVKIVGYTDS--IGSKS 224 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 ++ RL+ RA + + L+K G+ +RI I G + + + NRR D V Sbjct: 225 YND-RLAYKRALAVKEYLIKQGIPAERIE-IVGRGKENYLVDNKTWLNRFTNRRADFFVM 282 Query: 340 D 340 + Sbjct: 283 E 283 >gi|212709831|ref|ZP_03317959.1| hypothetical protein PROVALCAL_00879 [Providencia alcalifaciens DSM 30120] gi|212687642|gb|EEB47170.1| hypothetical protein PROVALCAL_00879 [Providencia alcalifaciens DSM 30120] Length = 357 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 R+ +F+ + + PE L ++ L++ + + G TD N LS Sbjct: 229 RSDVLFNFNKATLKPEGQQALNELYNELSNIDPTQGRVLVVGFTDRI---GSQNYNLPLS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ GV I+ G + D + +RR++I Sbjct: 286 QKRAQSVVDYLVAKGVPASAIAA-EGRGKEDPVTGNKCDAVKGRAALIECLAPDRRVEIE 344 Query: 338 VE 339 ++ Sbjct: 345 IQ 346 >gi|121594094|ref|YP_985990.1| TonB box domain-containing protein [Acidovorax sp. JS42] gi|222111172|ref|YP_002553436.1| peptidoglycan-associated lipoprotein [Acidovorax ebreus TPSY] gi|120606174|gb|ABM41914.1| TonB box domain protein [Acidovorax sp. JS42] gi|221730616|gb|ACM33436.1| peptidoglycan-associated lipoprotein [Acidovorax ebreus TPSY] Length = 180 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S I PE VL+ + S+ + + GHTD R N L RA + Sbjct: 79 FDFDSFIVKPEFQSVLEAHARFMKASSARKVVLEGHTDE---RGGREYNLALGQKRAEAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + L GV + ++ +S F + + ++ NRR+++ Sbjct: 136 RRSLGLLGVQDAQVEAVS-FGKEKPAVQGHTEDAHSQNRRVEL 177 >gi|313676967|ref|YP_004054963.1| ompa/motb domain protein [Marivirga tractuosa DSM 4126] gi|312943665|gb|ADR22855.1| OmpA/MotB domain protein [Marivirga tractuosa DSM 4126] Length = 618 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 10/110 (9%) Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + G ++ + N F+ S ++ + K+ ++L+ + I I G+T Sbjct: 504 NFALKPIEKGAIVEL----NNIYFEFDSYELSEKSSNEINKVADLLSQNPNLKIEIGGYT 559 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSEDRISKISGFAHHRLK 321 D + + N LS RA + Y+ L +K GV E+ I + G+ +L Sbjct: 560 DE--IGSASY-NKELSRKRAKAVYEKLIIKDGVLEENIKAV-GYGAKKLP 605 >gi|296104273|ref|YP_003614419.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058732|gb|ADF63470.1| putative outer membrane lipoprotein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 161 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +T +FDK+ + PE+ ++ + LA + + GHTD N LSL R Sbjct: 53 DTILFDKNDARLRPESEAQIRTMASRLAATGLKHARMDGHTDNY---GEESYNEALSLKR 109 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + V K G ++ + NRR+ +++ Sbjct: 110 ANAVADVWAKGANIPRSNLTTQGLGKKYPVSSNSTAQGRAENRRVAVVI 158 >gi|257126466|ref|YP_003164580.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] gi|257050405|gb|ACV39589.1| OmpA/MotB domain protein [Leptotrichia buccalis C-1013-b] Length = 149 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + I I L++I +L + + G+TD++ + N +LSL RA + Sbjct: 37 FKVNGRIITEYQIFDLKEIVNILNKFGESGTVDFVGYTDST---GTKKYNQKLSLIRARN 93 Query: 295 AYQVLMKSGVSED-RISKISGFAHHRLKIASDPMNSA--NRRIDIL 337 ++ + G+ + I KISG +D NRR++IL Sbjct: 94 VARLFREFGLKDAISIGKISGKGEEDPVDLNDTDQGKYSNRRVEIL 139 >gi|311696332|gb|ADP99205.1| OmpA/MotB domain protein [marine bacterium HP15] Length = 146 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 + I LQ+ L + I GH+D N LS RA + + L++ Sbjct: 47 LDKDDIAFLQQHAAYLKEHPSVSVRIHGHSDNF---GSEDYNQFLSRLRANAVARSLIQE 103 Query: 303 GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 GV E RI + L D +ANRR+++ Sbjct: 104 GVEESRILMRHWGSARPLATPED--RAANRRVEL 135 >gi|310814990|ref|YP_003962954.1| OmpA domain protein [Ketogulonicigenium vulgare Y25] gi|308753725|gb|ADO41654.1| OmpA domain protein [Ketogulonicigenium vulgare Y25] Length = 299 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ PLP V L + + L + I GHTDA N +S RA + Sbjct: 193 FETGSAAPLPGADVALGALADWLRADPARRVLIVGHTDA---SGSLAANMTISQARAEAV 249 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRID 335 Q L + +G + + +D + NRR++ Sbjct: 250 AQRLRSEFAVPAAQLQAAGAGYMAPRAPNDDEAGRALNRRVE 291 >gi|37704608|gb|AAR01576.1| OprF [Pseudomonas sp. MFY52] gi|37704630|gb|AAR01587.1| OprF [Pseudomonas sp. MFY76] Length = 316 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKTNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESSRVQSV-GYGESRPVA 316 >gi|262039316|ref|ZP_06012632.1| outer membrane porin F [Leptotrichia goodfellowii F0264] gi|261746660|gb|EEY34183.1| outer membrane porin F [Leptotrichia goodfellowii F0264] Length = 104 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 ++++ + +FD S P+ +LQ + E + + ++I GHTD+ + N Sbjct: 9 VTVVLDERSLLFDFDKSNVKPQYYGILQNLKEYIEVNDYDVTIIGHTDS---KGTNEYNM 65 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 +L + RA S +++ GV RI + + Sbjct: 66 KLGMRRAESVKAKMIEFGVPASRIVGVESRGEEEPVATN 104 >gi|184157314|ref|YP_001845653.1| small protein A [Acinetobacter baumannii ACICU] gi|332876511|ref|ZP_08444276.1| OmpA family protein [Acinetobacter baumannii 6014059] gi|183208908|gb|ACC56306.1| Small protein A (tmRNA-binding) [Acinetobacter baumannii ACICU] gi|322507199|gb|ADX02653.1| small protein A (tmRNA-binding) [Acinetobacter baumannii 1656-2] gi|323517176|gb|ADX91557.1| small protein A (tmRNA-binding) [Acinetobacter baumannii TCDC-AB0715] gi|332735280|gb|EGJ66342.1| OmpA family protein [Acinetobacter baumannii 6014059] Length = 259 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 16/121 (13%) Query: 228 IIDQRNTPMFD--KSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283 I D+ + +F + + + E + KI E + S I + G TD P + Sbjct: 141 IADRTASVLFAFERFDASAIEEGTNSVVKIAEQIKKSPTTTPIIVSGFTD--PLGKFSY- 197 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335 N LS RA + ++L++ GV RI +I + L N + NRR++ Sbjct: 198 NQELSSKRANTVAKLLVRQGVEPSRI-QIQANSQTDLYKQCSDNNSSQLIQCLAPNRRVN 256 Query: 336 I 336 I Sbjct: 257 I 257 >gi|294140610|ref|YP_003556588.1| OmpA family protein [Shewanella violacea DSS12] gi|293327079|dbj|BAJ01810.1| OmpA family protein [Shewanella violacea DSS12] Length = 252 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 21/188 (11%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + K + + ++ S +L + + L ++ + S L + + Sbjct: 68 GGIIGKLVGDDTEMESQQLKLTEQASTINLLN-EDNQSLAIISNQYESLQDELTELRLAR 126 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHT 272 G+ I F SS L ++ VL + + + G+ Sbjct: 127 QQKLTELELGLNIQ---------FKTGSSQLETHFQPQLDELASVLRISNDLRLDLMGYA 177 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN- 331 D R + N LS R L+ GV E +++ S + A N Sbjct: 178 DR---RGESTYNQALSEQRVAEVKSYLLTKGVDEKKLAA-SAYGASAPLTAEQSF--END 231 Query: 332 ---RRIDI 336 RR+ I Sbjct: 232 FFDRRVTI 239 >gi|146997|gb|AAA24239.1| outer membrane protein II [Escherichia blattae] Length = 241 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G+TD + A N RLS Sbjct: 122 KSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTD--RIGSDAY-NQRLS 178 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ +I+ G S N RR++I Sbjct: 179 QQRAQSVVDYLVSKGIPAGKITA-QGQGESNPVTGSTCDNVKQRAALIDCLAPDRRVEIE 237 Query: 338 VE 339 V+ Sbjct: 238 VK 239 >gi|269139917|ref|YP_003296618.1| peptidoglycan-associated outer membrane lipoprotein [Edwardsiella tarda EIB202] gi|267985578|gb|ACY85407.1| peptidoglycan-associated outer membrane lipoprotein [Edwardsiella tarda EIB202] gi|304559752|gb|ADM42416.1| Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor [Edwardsiella tarda FL6-60] Length = 170 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 7/138 (5%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGE 257 + G+ A+ + ++ + + + + + F P+ + L Sbjct: 31 DQSGMGMGANGMENSSSNLSSDEQARLQMQELQKNNIVYFGLDKYDVTPDYMQELDAHAA 90 Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GF 315 L + +++ GHTD R N L RA + L GVS D+I +S G Sbjct: 91 FLRSNPSYKVTVEGHTDE---RGTPEYNIALGERRANAVKMYLQGKGVSADQIDIVSYGK 147 Query: 316 AHHRLKIASDPMNSANRR 333 + + + NRR Sbjct: 148 EKPAVLGHDEAAYAKNRR 165 >gi|332993882|gb|AEF03937.1| peptidoglycan-associated lipoprotein [Alteromonas sp. SN2] Length = 188 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK-GVLFETTRTGILISIIDQRNTPM 236 ++ LA ++ + QD + + + A + + + + + T Sbjct: 32 AAERNRLAQEQAQAEQDARQAEAQRVEAEAAQRMKRSEEMVQQEMEALK-----NEQTVY 86 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + PE +L K L + ++I GHTD+ R N L RA S Sbjct: 87 FDFDRASIKPEFQRLLDKHAAFLVKNPSTKVTIEGHTDS---RGTPEYNIALGERRAQSV 143 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333 LM +GVS +I+ +S + S + NRR Sbjct: 144 ETYLMNAGVSSSQITVVSYGEEKSAVMGSTEYAFAQNRR 182 >gi|124514981|gb|EAY56492.1| putative Outer membrane protein, OmpAfamily [Leptospirillum rubarum] Length = 521 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 224 ILISIID-QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 +L I D R F + +L++ +L I + GH+D R Sbjct: 75 LLRRIQDLSRKDLSFATGKADLNQRDRRILREDAVLLKRYPKVEILLIGHSDE---RGNQ 131 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 N+RL LDR SA Q L G++ RI +S Sbjct: 132 IYNFRLGLDRGKSARQFLESLGIAASRIHVVS 163 >gi|332534695|ref|ZP_08410524.1| OmpA/MotB domain protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035845|gb|EGI72328.1| OmpA/MotB domain protein [Pseudoalteromonas haloplanktis ANT/505] Length = 432 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS + I + ++ + L + + I+GH + N +LS RA++ Sbjct: 328 FSADSSDVRSQYIQEISRLADFLKENPTKQVEIQGHAS---LDGDRKYNRKLSEKRAFAV 384 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVED 340 ++L+K V R+ G+ + ++ S N+ANRRI+ ++ D Sbjct: 385 AEILIKQFDVEPKRVKS-FGYGIDQPRVNEISVRANAANRRIEAVITD 431 >gi|147003|gb|AAA24242.1| outer membrane protein II [Escherichia blattae] Length = 240 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G+TD + A N RLS Sbjct: 121 KSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTD--RIGSDAY-NQRLS 177 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDIL 337 RA S L+ G+ +I+ G S N RR++I Sbjct: 178 QQRAQSVVDYLVSKGIPAGKITA-QGQGESNPVTGSTCDNVKQRAALIDCLAPDRRVEIE 236 Query: 338 VE 339 V+ Sbjct: 237 VK 238 >gi|117619075|ref|YP_857151.1| sodium-type flagellar protein MotY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560482|gb|ABK37430.1| sodium-type flagellar protein MotY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 287 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +DK+S + L IGE + S +V+ I ++D+ N +LS RA + Sbjct: 180 YDKNSDELSLASKRRLAMIGEYVKVDKSIDVVVIDAYSDSY---GGRWPNQKLSEKRADA 236 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 +V M G+ +I + G + +++ + NRR+ I Sbjct: 237 IKKVFMDLGIEPGKI-SVEGHGEKQHIASNETEDGRAKNRRVVI 279 >gi|327404493|ref|YP_004345331.1| OmpA/MotB domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320001|gb|AEA44493.1| OmpA/MotB domain protein [Fluviicola taffensis DSM 16823] Length = 279 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 14/133 (10%) Query: 213 KGVLFETTRTGILI-SIIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLA-HSTE 264 + + + + G I D FD S PE L +I V+ H+ Sbjct: 147 RSIFVDDVKNGRKSKEIRDLERKNFDFKPIYFDYDKSDIRPEFESFLNRIVYVINSHTDL 206 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--I 322 + + G+TDA + D LS RA + +K+G+ DRI I Sbjct: 207 RVKVTGNTDAD-GSDQYNDG--LSERRAEAIIAFFVKAGLKRDRIV-IDFKGEKNPVSDN 262 Query: 323 ASDPMNSANRRID 335 SD NRR+D Sbjct: 263 NSDEGKQLNRRVD 275 >gi|307295611|ref|ZP_07575447.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] gi|306878650|gb|EFN09870.1| OmpA/MotB domain protein [Sphingobium chlorophenolicum L-1] Length = 234 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 + FD + PLPE + + + + A + G+TD R N LSL RA Sbjct: 128 SIFFDWNMDAPLPEGVGTISTLTQTAAQCGWTRFGVTGYTDT---SGSNRYNDGLSLRRA 184 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 + ++ + G++ D ++ ++G +LKI + NRR++I Sbjct: 185 RNVASLMSQGGIATDAMT-VTGLGETQLKIETADGVREPMNRRVEI 229 >gi|83647670|ref|YP_436105.1| outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] gi|83635713|gb|ABC31680.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [Hahella chejuensis KCTC 2396] Length = 346 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLS 288 +R F S+ + L K+ + V I + GHTD++ N RLS Sbjct: 218 ERTAVFFKLDESVLTDQDKRELDKVVLYVKADPSVTAIFVDGHTDST---GRRIYNRRLS 274 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMN-SANRRIDILVED 340 DRA + LM GV+ ++I+ + + P N + NRR + +E Sbjct: 275 KDRAEAVTAYLMDKGVASEKIT-TRYHGERYPVVQNAGPKNLARNRRATVRLER 327 >gi|114570410|ref|YP_757090.1| OmpA/MotB domain-containing protein [Maricaulis maris MCS10] gi|114340872|gb|ABI66152.1| OmpA/MotB domain protein [Maricaulis maris MCS10] Length = 359 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 8/113 (7%) Query: 230 DQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRL 287 D + P+ F+ SS + V+ + +++ G TD A N L Sbjct: 248 DDVSFPVYFEWDSSTLTAQARAVIAQASNQRGSCGVTRVTVAGFTDR---SGAASYNVGL 304 Query: 288 SLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 S RA + L++ GV IS F R +A+ NRR ++++ Sbjct: 305 SERRARVVREELVRLGVPASTISM-EAFGETRNAVATADGVREPLNRRTEVVI 356 >gi|305665970|ref|YP_003862257.1| OmpA domain-containing protein [Maribacter sp. HTCC2170] gi|88710745|gb|EAR02977.1| OmpA domain protein [Maribacter sp. HTCC2170] Length = 301 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 ++S E I L + + +I GHTD + R+ N +L +RA A Sbjct: 201 AEASINLRAEQRQKFANISRYLDKEDDAVANIVGHTDNTGQRDA---NIKLGQERADFAK 257 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 LM++G+ E RI+ + ++D + NRR I + Sbjct: 258 SYLMRNGIPESRINA-TSKGPDEPIASNDTEEGRAKNRRTVITL 300 >gi|91762267|ref|ZP_01264232.1| OmpA family protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718069|gb|EAS84719.1| OmpA family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 180 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 + F + ++ + L+K L +++ + + GH D R N L Sbjct: 73 PDRVFFATNETVLTTASRETLRKQAAWLRKNSDINVVLEGHADE---RGTREYNLALGER 129 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRR 333 RA SA LM G+S +RI + + R + S+P+ S NRR Sbjct: 130 RANSAKDYLMTYGISSERI-SVLSYGKERPVDSGSNPLAWSKNRR 173 >gi|124266540|ref|YP_001020544.1| putative peptidoglycan-associated lipoprotein [Methylibium petroleiphilum PM1] gi|124259315|gb|ABM94309.1| putative peptidoglycan-associated lipoprotein precursor [Methylibium petroleiphilum PM1] Length = 179 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + E ++ +VL + + I GHTD R N L RA + Sbjct: 78 FDFDSFLVKDEYRPIVDNYSKVLNSDRKKRVVIEGHTDE---RGGREYNLALGQKRAEAV 134 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L GV + +I +S SD + NRR ++ Sbjct: 135 AKSLTLLGVQDGQIESVSYGKERPAVTGSDEAAWAKNRRAEL 176 >gi|260576643|ref|ZP_05844630.1| peptidoglycan-associated lipoprotein [Rhodobacter sp. SW2] gi|259021128|gb|EEW24437.1| peptidoglycan-associated lipoprotein [Rhodobacter sp. SW2] Length = 177 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F S + L + L + I I GH D N L R Sbjct: 67 DRVFFAVDQSNLSDQARATLAGQAQWLNTNRDYAIIIEGHADEQ---GTREYNLALGARR 123 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI-ASDPMNSANRR 333 A + L+ GV+ R+ +S +++ +++ S NRR Sbjct: 124 ASAVQNYLISQGVTASRMRTVSYGKERPIEVCSTEDCYSRNRR 166 >gi|157414881|ref|YP_001482137.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81116] gi|157385845|gb|ABV52160.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81116] gi|307747518|gb|ADN90788.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni M1] gi|315931798|gb|EFV10753.1| ompA family protein [Campylobacter jejuni subsp. jejuni 327] Length = 317 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 66/328 (20%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ Q + ++T Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANS--------------------QKAELEANIT 101 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + KDL + D + +K+ L L K+ ++ Q +K+ + GL+ Sbjct: 102 NYKQLSKDLNLTLDNK---DKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNL--GLIR 156 Query: 209 DNIVKGVLFETTRTGILISIIDQRNT------PMFDKSSSIPLPETIVVLQKIG------ 256 +N+ K + + I+I ++ + +FDK S + E L+KI Sbjct: 157 ENLSKELQSKLDNN---ITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDA 213 Query: 257 -----EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RI 309 ++ ++ I I GHTD+ N LS RAY + S+ ++ Sbjct: 214 ILEDPKIFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKL 269 Query: 310 SKISGFAHHRLKIASDPMN-SANRRIDI 336 SG + + + +RRI+I Sbjct: 270 LMASGRSFSDPVFVNGVEDKDKSRRIEI 297 >gi|187918870|ref|YP_001887901.1| RND family efflux transporter MFP subunit [Burkholderia phytofirmans PsJN] gi|187717308|gb|ACD18531.1| efflux transporter, RND family, MFP subunit [Burkholderia phytofirmans PsJN] Length = 560 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 13/115 (11%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 + F S+ ++ L + L + I G+TD+ N +L+ Sbjct: 455 QTAVFFALGSASLDSQSADALAGVARRLLAAPGSRAVISGYTDS---SGSYEANVKLAAA 511 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRIDILVEDRQG 343 RA + L+ +GV RI R +ASD + + RR+D+ + G Sbjct: 512 RAATVRSALIVAGVDVARIDM------RRPARIVASDAPDKS-RRVDVTLAPSTG 559 >gi|19881379|gb|AAM00932.1|AF491824_1 hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDLAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 341 >gi|296158506|ref|ZP_06841336.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295891074|gb|EFG70862.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 372 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 12/109 (11%) Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD+ + LP L ++ L +V I I G+TD N +LS RA Sbjct: 237 FDRGDLAGMLPAGKAKLDELVRNLKQVDDVTSIRIDGYTDRL---GSDSYNRQLSAKRAE 293 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA------NRRIDI 336 + + L GVS ++ G ++ + NRR+++ Sbjct: 294 TVKRYLQSGGVSAPISARGRGKEDPVVQCNDRNHEALIACLGPNRRVEL 342 >gi|270339898|ref|ZP_06203472.1| OmpA family protein [Prevotella bergensis DSM 17361] gi|270333364|gb|EFA44150.1| OmpA family protein [Prevotella bergensis DSM 17361] Length = 694 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 12/110 (10%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 IS+ + +D + + V L ++ +L + + I + H D ++ + N Sbjct: 517 ISVPTLIDNIFYDFDKATLRDTSKVALDRLVTMLNENPNITIELSAHAD---YKGASTYN 573 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 RLS RA S L+ G++ DR++ + G+ + K NR++ Sbjct: 574 KRLSQRRAESVVNYLIAHGIAADRLTPM-GYGKEKPKT-------VNRKV 615 >gi|261344255|ref|ZP_05971899.1| outer membrane protein A [Providencia rustigianii DSM 4541] gi|282567857|gb|EFB73392.1| outer membrane protein A [Providencia rustigianii DSM 4541] Length = 353 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 R+ +F+ + + PE L ++ L++ + + G TD N LS Sbjct: 225 RSDVLFNFNKASLKPEGQQALNELYNELSNIDPTQGRVLVVGFTDRI---GSQNYNLPLS 281 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDIL 337 RA S L+ GV I+ G + D + +RR++I Sbjct: 282 QKRAQSVVDYLVAKGVPASAIAA-EGRGKEDPVTGNKCDAVKGRAALIECLAPDRRVEIE 340 Query: 338 VE 339 ++ Sbjct: 341 IQ 342 >gi|146276382|ref|YP_001166541.1| OmpA/MotB domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554623|gb|ABP69236.1| OmpA/MotB domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 730 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLP----ETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 F S+ P V+ Q I +++A + I GHTDA N LS R Sbjct: 617 FATGSAAIDPGQAERLAVLGQTIADMVAERPGEVFLIEGHTDAV---GDEASNLALSDRR 673 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S L + V + + + G+ L+I +D NRR+ + Sbjct: 674 AESVALALSEYFDVPPENMV-VQGYGEGDLRIDTDGPEQRNRRVAV 718 >gi|327396327|dbj|BAK13749.1| OmpA/MotB domain protein [Pantoea ananatis AJ13355] Length = 287 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 47/199 (23%) Query: 172 NYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 P A R L L + + L D I + G+ Sbjct: 77 KQVDPLEQYMSQAAAARLNLLYQLRNNLKQSFPELPVDVIPEEGTLRFQGEGL------- 129 Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLA----------------------HSTEVISIR 269 F +S + +++ + + L E + I Sbjct: 130 -----FTSNSFTLSDDKRKIVEALAKTLDSLLPCYTFSQSVGWNKSCNPSFAIIEAVQIE 184 Query: 270 GHTDASPFRNIARDNWRLSLDRA-------YSAYQVLMKS-GVSEDRISKISGFAHHRLK 321 GHTD+ + N LS +RA +A L+ + + ++G+ R Sbjct: 185 GHTDS---KGEDVYNLNLSTNRAITTFTSMLAAAPDLVAHFNMRSQPVLSVAGYGKMRPV 241 Query: 322 IASDP--MNSANRRIDILV 338 +D + NRRID+ + Sbjct: 242 KPNDTPQNMAMNRRIDLRI 260 >gi|260778540|ref|ZP_05887432.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604704|gb|EEX30999.1| outer membrane protein [Vibrio coralliilyticus ATCC BAA-450] Length = 203 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F+ SS P + ++++ + L I ++G+ N LS RA Sbjct: 83 LFENDSSDIQPVFLTQIREMADFLKIYPSTSIELQGYASKVGNHGH---NMALSQRRAEE 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L+ +GVS RI +I GF L D ++ NR++ V +G Sbjct: 140 VESALINNGVSHTRI-RIVGFGDTNLADTGDDEITHAKNRKVVATVVGHKG 189 >gi|113970538|ref|YP_734331.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-4] gi|113885222|gb|ABI39274.1| OmpA/MotB domain protein [Shewanella sp. MR-4] Length = 264 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 86/278 (30%), Gaps = 26/278 (9%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 N++ S + R S + + D G L Sbjct: 2 MKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLSGGALL 61 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +L S D K+ ++ +++ L LS ++ + +R Sbjct: 62 GALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQ---LASLSSKQQASEQR 118 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K++ L+ + L G+ + F SS Sbjct: 119 AAEYASTQKQLDELLAE-------QQQLLSELALGMNVQ---------FRTGSSELESHF 162 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + L + +V+ S+E + ++G+ D R N LS R L+K GV+ + Sbjct: 163 LPQLDNVAKVMKRSSESNLELKGYADR---RGDLAYNQALSEQRLLEVRGYLIKQGVAPE 219 Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 RI+ F + +RR+ + ++ QG Sbjct: 220 RIT-TQAFGARMPLNDQQDSESDVFDRRVTLTMQPNQG 256 >gi|57237387|ref|YP_178400.1| flagellar motor protein MotB [Campylobacter jejuni RM1221] gi|86151261|ref|ZP_01069476.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|86153764|ref|ZP_01071967.1| flagellar motor component MotB [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612816|ref|YP_001000046.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni 81-176] gi|148926431|ref|ZP_01810114.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414633|ref|YP_001481889.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni 81116] gi|167005002|ref|ZP_02270760.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|205356014|ref|ZP_03222782.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315123901|ref|YP_004065905.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57166191|gb|AAW34970.1| chemotaxis protein MotB, putative [Campylobacter jejuni RM1221] gi|85841608|gb|EAQ58855.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|85842725|gb|EAQ59937.1| flagellar motor component MotB [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250338|gb|EAQ73296.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|145844594|gb|EDK21700.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385597|gb|ABV51912.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 81116] gi|205346138|gb|EDZ32773.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni CG8421] gi|307747273|gb|ADN90543.1| Chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni M1] gi|315017623|gb|ADT65716.1| flagellar motor protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931586|gb|EFV10552.1| ompA family protein [Campylobacter jejuni subsp. jejuni 327] Length = 247 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 32/190 (16%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ K+ K+ + K KEE+ L L + + + KRLQ + + VA Sbjct: 60 STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266 N+ V F++ S+ + L+++ E+ + I Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 IRG+TD S + L+ RA + + ++ G + I I + + +P Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210 Query: 327 MNSANRRIDI 336 N R++I Sbjct: 211 QALENNRVEI 220 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 IFD + ++K + S +LK Q + ++ L Sbjct: 53 ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183 S + E+G S D++ + + +LPP +K +I Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157 >gi|328675505|gb|AEB28180.1| Outer membrane lipoprotein omp16 precursor [Francisella cf. novicida 3523] Length = 417 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGH---------TDASPFRNIARDNWR 286 FD S + VL K+ L + +I+G+ TD + + N R Sbjct: 70 FDADSYTLNAQAKEVLDKLFAYLKLTDTTRFTIKGYAGKVESKILTDQ---KILTDYNIR 126 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 LS +RA S + L+ G+ I + +D + N+R++I +E R Sbjct: 127 LSKNRASSVEEYLVNKGLDSSDGITIKALGYQDPIAPNDSTSSRAINQRVEITLESR 183 >gi|325336487|gb|ADZ12761.1| OmpA3 [Riemerella anatipestifer RA-GD] Length = 473 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S + P++ L ++ + + G TD R A N LS RA Sbjct: 364 FALNSDVIRPQSFGKLDNAANIIKGMGLSKQYLVVVGATDT---RGSASYNLNLSKRRAN 420 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 S + L+ GVS + K G + LK +P N ANRR+ Sbjct: 421 SVVKYLVNKGVSAS-VLKAEGRGKNDLKYPECNPATKCPEWKNEANRRV 468 >gi|315022385|gb|EFT35413.1| Thrombospondin type 3 repeat:OmpA/MotB [Riemerella anatipestifer RA-YM] Length = 145 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S + P++ L ++ + + G TD R A N LS RA Sbjct: 36 FALNSDVIRPQSFGKLDNAANIIKGMGLSKQYLVVVGATDT---RGSASYNLNLSKRRAN 92 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 S + L+ GVS + K G + LK +P N ANRR+ Sbjct: 93 SVVKYLVNKGVSAS-VLKAEGRGKNDLKYPECNPATKCPEWKNEANRRV 140 >gi|313206072|ref|YP_004045249.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868] gi|312445388|gb|ADQ81743.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868] Length = 473 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +S + P++ L ++ + + G TD R A N LS RA Sbjct: 364 FALNSDVIRPQSFGKLDNAANIIKGMGLSKQYLVVVGATDT---RGSASYNLNLSKRRAN 420 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 S + L+ GVS + K G + LK +P N ANRR+ Sbjct: 421 SVVKYLVNKGVSAS-VLKAEGRGKNDLKYPECNPATKCPEWKNEANRRV 468 >gi|294012218|ref|YP_003545678.1| OmpA-family protein [Sphingobium japonicum UT26S] gi|292675548|dbj|BAI97066.1| OmpA-family protein [Sphingobium japonicum UT26S] Length = 236 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 + FD + PLPE + + + A + G+TD R N LSL RA Sbjct: 130 SIFFDWNMDTPLPEGAGTISTLTQTAAQCGWTRFGVTGYTDT---SGSNRYNDGLSLRRA 186 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 + ++ + GVS D I+ ++G +LKI + NRR++I Sbjct: 187 RNVASLMSQGGVSADAIT-VTGLGETQLKIETADGVREPMNRRVEI 231 >gi|149202387|ref|ZP_01879360.1| OmpA domain protein [Roseovarius sp. TM1035] gi|149144485|gb|EDM32516.1| OmpA domain protein [Roseovarius sp. TM1035] Length = 311 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + L + E L S E +++ GH+D+ N LS RA + Sbjct: 204 FGLGDNALGAGPYRSLVTLAEFLTASPETRVALVGHSDSI---GGLEQNSALSRARAEAV 260 Query: 296 YQVLMKS-GVSEDRISK-ISGFAHHRLKIASDPMNSANRRIDILVED 340 +L++ GV+ ++ G+ S NRR+++++ D Sbjct: 261 LNLLVEQHGVAPAQVEAHGIGYLSPIASNTSPEGRERNRRVEVVLLD 307 >gi|94970145|ref|YP_592193.1| OmpA/MotB family outer membrane protein [Candidatus Koribacter versatilis Ellin345] gi|94552195|gb|ABF42119.1| outer membrane protein, OmpA/MotB family [Candidatus Koribacter versatilis Ellin345] Length = 242 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 67/206 (32%), Gaps = 10/206 (4%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 E + + +E K++ K ++ + + A + + A + Sbjct: 29 EQAAPIINKTNELDDLTAKNSRDIKDTDRRAQSGIADAQAKATTADQHAVQAGQQADAAN 88 Query: 201 STLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + + E + ++ F + + L ++G + Sbjct: 89 KNATQVNGQVASLAGTVENLDNYKPV----AESSVHFGFDKADLTKKAKDALDQLGGQFS 144 Query: 261 HSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 + +I + G TD++ A N++LS RA + Q L + G + Sbjct: 145 STKHFIIEVEGSTDST---GDADYNYQLSKRRADAVIQYLADKYQIPAHKIYLIGLGKDK 201 Query: 320 L--KIASDPMNSANRRIDILVEDRQG 343 K A+ + NRR+D+ + G Sbjct: 202 PVEKNATSEGRAKNRRVDVRLMTNTG 227 >gi|19881371|gb|AAM00928.1|AF491820_1 hemagglutinin antigen [Avibacterium paragallinarum] gi|19881381|gb|AAM00933.1|AF491825_1 hemagglutinin antigen [Avibacterium paragallinarum] gi|19881383|gb|AAM00934.1|AF491826_1 hemagglutinin antigen [Avibacterium paragallinarum] gi|38385761|gb|AAR19399.1| hemagglutinin antigen [Avibacterium paragallinarum] gi|89147814|gb|ABD62756.1| hemagglutinin antigen [Avibacterium paragallinarum] Length = 344 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 231 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDLAGYTDRI---GSEAANLKLSQRRADTV 287 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 288 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 341 >gi|294140499|ref|YP_003556477.1| OmpA family protein [Shewanella violacea DSS12] gi|293326968|dbj|BAJ01699.1| OmpA family protein [Shewanella violacea DSS12] Length = 197 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD SS+ E + L K+ ++ + I+GHTD ++ N LS+ RA + Sbjct: 94 FDFDSSLLKDEDKMELDKLIALVNSLDGKLVIKGHTD---YQGSNAYNENLSMRRARTIQ 150 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333 L + + F + I S + N+ NRR Sbjct: 151 DYLEGQLTQGEYEYSVEHFGELQPIIESHTLQANALNRR 189 >gi|85713237|ref|ZP_01044263.1| Sodium-type flagellar protein motY precursor [Idiomarina baltica OS145] gi|85692932|gb|EAQ30904.1| Sodium-type flagellar protein motY precursor [Idiomarina baltica OS145] Length = 303 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%) Query: 241 SSIPLPETIVVLQKIGEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S + L++I + L + + I +TDA N L+ RA + Sbjct: 198 SDELTAPSQRKLKQISDYLKVDADLKLVLIDSYTDAL---GAREPNQTLTEQRANAIKSF 254 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 ++ G+ DRI ++ R +D NRR+ I+ ++ Sbjct: 255 FVERGIKADRIQTVA-HGEDRPIDHNDNEIGRQKNRRV-IVQLNK 297 >gi|330957696|gb|EGH57956.1| ompA family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 388 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 12/215 (5%) Query: 130 NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRK 189 N+Q S D L ++ + + K L M Sbjct: 83 PFGSNDNAQAKPDAVASKPADKPAAPSLVAKSETDTKWWWPFGANDGKTDEPKALPMPDP 142 Query: 190 KRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETI 249 K Q + L + D+ F+ R L++I ++ ++ LP T+ Sbjct: 143 KVTQAWLDEYEPRLRAAIKDSP-----FQLERREDLLAITAPVDSSFNPDRPAMLLPNTL 197 Query: 250 VVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 + ++ + + + I GH D N ++S +RA S + SG+ +R Sbjct: 198 GPITRLAKAVEGDQKTAVLILGHADT---SGPTDANQKISQERAQSVAAIFRLSGLERNR 254 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + + G + A+D + NRR++IL+ + Sbjct: 255 L-SLRGMGAVMPRAANDSLQGRALNRRVEILMTPQ 288 >gi|315023542|gb|EFT36546.1| OmpA [Riemerella anatipestifer RA-YM] Length = 488 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 359 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 415 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 416 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 457 >gi|296280733|gb|ADH04664.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|225350154|gb|ACN87987.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|225350146|gb|ACN87983.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|225350140|gb|ACN87980.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|225350134|gb|ACN87977.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|225350128|gb|ACN87974.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|163750646|ref|ZP_02157883.1| OmpA family protein [Shewanella benthica KT99] gi|161329641|gb|EDQ00632.1| OmpA family protein [Shewanella benthica KT99] Length = 388 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 + ETT L SI F +SS+ E+ ++K+ + E + I GH Sbjct: 262 IYTETTEQRDLGSIQ-------FANNSSVVKTESFAHIEKLATYMNKKPESTVLISGHAS 314 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNS--A 330 A N LS RA + ++L++ G+S+DR+ GF + I + + A Sbjct: 315 DV---GKADYNMALSDKRAKAVAKILVEKYGISQDRVEA-KGFGITQAVIQGNSAEANKA 370 Query: 331 NRRID 335 NRRI+ Sbjct: 371 NRRIE 375 >gi|156106757|gb|ABU49601.1| outer membrane protein [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|126046387|gb|ABN73088.1| OmpA [Riemerella anatipestifer] gi|126046398|gb|ABN73090.1| OmpA [Riemerella anatipestifer] gi|126046413|gb|ABN73093.1| OmpA [Riemerella anatipestifer] gi|225350132|gb|ACN87976.1| OmpA [Riemerella anatipestifer] gi|225350136|gb|ACN87978.1| OmpA [Riemerella anatipestifer] gi|225350138|gb|ACN87979.1| OmpA [Riemerella anatipestifer] gi|225350142|gb|ACN87981.1| OmpA [Riemerella anatipestifer] gi|225350144|gb|ACN87982.1| OmpA [Riemerella anatipestifer] gi|225350148|gb|ACN87984.1| OmpA [Riemerella anatipestifer] gi|225350150|gb|ACN87985.1| OmpA [Riemerella anatipestifer] gi|225350152|gb|ACN87986.1| OmpA [Riemerella anatipestifer] gi|225350156|gb|ACN87988.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|119382554|gb|ABL73889.1| outer membrane protein A [synthetic construct] Length = 395 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|119382556|gb|ABL73890.1| outer membrane protein A [synthetic construct] Length = 388 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|106647238|gb|ABF82272.1| outer membrane protein A precursor [Riemerella anatipestifer] gi|318068275|gb|ADV36925.1| outer membrane protein A [Riemerella anatipestifer] gi|318068277|gb|ADV36926.1| outer membrane protein A [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235065|gb|AAT70735.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|728644|emb|CAA59448.1| MotB [Rhodobacter sphaeroides] Length = 332 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 12/180 (6%) Query: 23 IDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF----GKNLMT 78 P +W +AD T LMAFF+++ D+ + + T Sbjct: 24 PKCPPPGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDAT 83 Query: 79 ASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGST--------NQKKQYQRLENN 130 + + D P + D D +++ D + K Q + E Sbjct: 84 SGNTMIDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAEALKKALEDGKLQVRSDEGE 143 Query: 131 IFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKK 190 + + + SL R + L + + + ++ + + E++ + + Sbjct: 144 VVIELSGEDGRQQAQSLARALAETAGLGPLPEPQTTSSRGPSRRSGRRAPERVTGARAAR 203 >gi|312962752|ref|ZP_07777240.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens WH6] gi|311282969|gb|EFQ61562.1| peptidoglycan-associated lipoprotein [Pseudomonas fluorescens WH6] Length = 166 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + + + G+TD R N L RA + Sbjct: 67 FEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDE---RGTREYNMALGERRAKAVQ 123 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 + L+ GV+ ++ +S + D + + NRR+++ Sbjct: 124 RYLVLQGVAPGQLELVSYGKERPVATGHDEQSWAQNRRVEL 164 >gi|300726777|ref|ZP_07060207.1| immunogenic 75 kDa protein PG4 [Prevotella bryantii B14] gi|299775890|gb|EFI72470.1| immunogenic 75 kDa protein PG4 [Prevotella bryantii B14] Length = 689 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + ++ + E+ L ++ +L + V I + H D ++ N +LS R Sbjct: 519 DNIFYEFDKANLTSESTKALDELVNLLNENPNVTIELSAHCD---YKGSEDYNKQLSQRR 575 Query: 292 AYSAYQVLMKSGVSEDRISKISGFA 316 A S L+ G+++DR++ + G+ Sbjct: 576 AESVVNYLIAKGIAKDRLTPV-GYG 599 >gi|146298626|ref|YP_001193217.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153044|gb|ABQ03898.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 376 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 5/175 (2%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLS-GLVADNIVKGVLFETTRTGIL 225 + K + + E + R+ DL +I + S +V + V + + Sbjct: 205 LGKNTKHADWTVVSENVDLSAYDNRIADLENQIKNIPSKQVVVEKPVNNTTVVNDKDVVK 264 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 I D+ + FD + + P+ + + + L + + I G+ D A N Sbjct: 265 ELINDKYYSVYFDFNKATPIENSTAAIDVVLTYLRKNPSASLDIIGYADQV---GKAEYN 321 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 +LS RA + + K+G++ R++ I A ++ S+ RR+ V+ Sbjct: 322 EKLSNQRAENVKTIFEKAGIASSRLNVIPAGADTSIQKDSEEARRLARRVTFKVK 376 >gi|86144088|ref|ZP_01062426.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] gi|85829548|gb|EAQ48012.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] Length = 638 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 103/296 (34%), Gaps = 30/296 (10%) Query: 68 YFNPFGKNLMTASK-GIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YF+ G+ + ++D ++ + ++ + D+ + D G + Sbjct: 349 YFSTDGRAGLGGLDVYVYDFESETLENVGAPVNSTKDDFTFIINSDTGKGFFASNRANDP 408 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 L+++I+ + + K + N + Sbjct: 409 LDDDIYSFIKAACESTLIVKVVDKETKEPLNGALVGIRNLDNDLIASGSAEAPEATYTFQ 468 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI----------IDQ---RN 233 + + A+ + + G + D + + E++ +++ + D N Sbjct: 469 DPECGEEYFAR---AEMEGYMTDEKLVEIPSESSEVTVILELEPAVTAIPPSFDLGKLIN 525 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 FD S P+ V L KI E+L E I +R HTD+ R N LS R Sbjct: 526 PIYFDFDKSNIRPDAAVELAKIIEILKEYPELHIDVRSHTDS---RGNDAYNLALSERRN 582 Query: 293 YSAY-QVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVED 340 S ++ + G++ +R+S G+ +L + + NRR + +V+D Sbjct: 583 QSTIDYIVEEGGIARERLSG-RGYGETQLLNECSNGVDCTKEQHQLNRRSEFIVQD 637 >gi|304383837|ref|ZP_07366295.1| OmpA family protein [Prevotella marshii DSM 16973] gi|304335093|gb|EFM01365.1| OmpA family protein [Prevotella marshii DSM 16973] Length = 689 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 34/138 (24%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + +D + + PE+ L ++ ++L + V I +R H D +R N LS R Sbjct: 520 DNIFYDFNRATLRPESTAALDELVKLLQENPHVTIELRAHCD---YRGSDIYNKVLSQRR 576 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI----------------------------- 322 A + L+ G+++DR+S + G+ R KI Sbjct: 577 AEAVTAYLVAHGIAKDRLSPV-GYGKERPKIIRRKLTERYPWMKEGDVLSESYIKRLDAS 635 Query: 323 ASDPMNSANRRIDILVED 340 D N NRR + +V Sbjct: 636 RQDVCNQLNRRTEFIVLR 653 >gi|156325823|ref|XP_001618597.1| hypothetical protein NEMVEDRAFT_v1g224978 [Nematostella vectensis] gi|156199492|gb|EDO26497.1| predicted protein [Nematostella vectensis] Length = 563 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 +D + P ++ L + + + +S+ ++ A N N LSL RA S Sbjct: 34 YDYNKDELRPSSVASLDTLVNFMNDNP-SLSVEIYSFADAHGNPQY-NRDLSLRRAESVM 91 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS-DP-------MNSANRRIDILVEDRQG 343 L +G+ R++ GF A+ +P NRR ++ + G Sbjct: 92 SYLETAGIERSRMTA-KGFGESMPAAANKNPDGSDNPAGRQLNRRTELRIISDDG 145 >gi|59714204|ref|YP_206979.1| outer membrane protein [Vibrio fischeri ES114] gi|59482452|gb|AAW88091.1| outer membrane protein [Vibrio fischeri ES114] Length = 274 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + ++ E ++ A ++L K++ L V ++ Sbjct: 76 PATVHQAKQNEARIARELEGGLQLDAANDLVIQRNLLKRLERQLD-YVKRQETCQPPTDS 134 Query: 220 TRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273 I + + + + F +S+ P+ IV L + ++L H + I GH D Sbjct: 135 NNGNSDIELAQKIHDLLNRDNQFAFNSAELNPKYIVNLSEASQLLNQHKDFKLLITGHAD 194 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANR 332 A N L+L+RA + L G+S+ RI S ++ ++P NR Sbjct: 195 AL---GEEDANQNLALERAKQVKRYLSIFGLSQQRIHVDSVGSNDPYLSGTEPHVRLTNR 251 Query: 333 RIDILVE 339 R+ I + Sbjct: 252 RVTIELL 258 >gi|325275254|ref|ZP_08141211.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] gi|324099595|gb|EGB97484.1| OmpA/MotB domain-containing protein [Pseudomonas sp. TJI-51] Length = 323 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 82/213 (38%), Gaps = 16/213 (7%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+ + K ++T + K +ST ++ KI + Sbjct: 36 PFGSDKVAEQEVKAAVTDNVAKADAKSESTSRWWWPFGGDDQQAKGPVVPKIDQQATQAW 95 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVV 251 L + K+ + + + + T + + + P ++ LP ++ Sbjct: 96 LDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP------NMLLPMSLGP 146 Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 + ++ + + + + + GH D A N +LSL+RA S + SG+ DR++ Sbjct: 147 ITRVAKTVEGDPKTAVLVLGHADT---SGAAAANQKLSLERAASVSAIFRLSGLQRDRLT 203 Query: 311 KISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + G + A+D + NRR+++L+ + Sbjct: 204 -LKGMGSVMPRAANDSPEGRALNRRVEMLLTPQ 235 >gi|300870376|ref|YP_003785247.1| peptidoglycan-associated lipoprotein [Brachyspira pilosicoli 95/1000] gi|300688075|gb|ADK30746.1| outer membrane protein, peptidoglycan-associated lipoprotein [Brachyspira pilosicoli 95/1000] Length = 194 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 20/144 (13%) Query: 210 NIVKGVLFETTRTGILISIIDQRNTP-----------MFDKSSSIPLPETIVVLQKIGEV 258 N+ GV T G ++ + D + F ++ + E + + Sbjct: 38 NLPDGVRVRETPRGKVLELYDPKAKSDVGKQTGIYEVKFQFDKAVEIGEYKQAYNLVYTI 97 Query: 259 LAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH 317 L ++ E I + G S A N+ LS+ R+ ++Y L+K G +R+ K + F Sbjct: 98 LNNNPEIRIMVEG---NSSKEGKAPYNYNLSVRRSDTSYNYLIKLGTKNNRLLK-NAFGE 153 Query: 318 HRLKIASDPMNSANRRID-ILVED 340 + P ANRR + I++ + Sbjct: 154 GLPEY---PTLEANRRTEFIVIMN 174 >gi|238920737|ref|YP_002934252.1| peptidoglycan-associated outer membrane lipoprotein [Edwardsiella ictaluri 93-146] gi|238870306|gb|ACR70017.1| peptidoglycan-associated lipoprotein, putative [Edwardsiella ictaluri 93-146] Length = 170 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 7/138 (5%) Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM--FDKSSSIPLPETIVVLQKIGE 257 + G+ A + ++ + + + + + F P+ + L Sbjct: 31 DQSGMGMGAKGMENSSSNLSSDEQARLQMQELQKNNIVYFGLDKYDVTPDYMQELDAHAA 90 Query: 258 VLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GF 315 L + +++ GHTD R N L RA + L GVS D+I +S G Sbjct: 91 FLRSNPSYKVTVEGHTDE---RGTPEYNIALGERRANAVKMYLQGKGVSADQIDIVSYGK 147 Query: 316 AHHRLKIASDPMNSANRR 333 + + + NRR Sbjct: 148 EKPAVLGHDEAAYAKNRR 165 >gi|161525435|ref|YP_001580447.1| OmpA/MotB domain-containing protein [Burkholderia multivorans ATCC 17616] gi|171316170|ref|ZP_02905394.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|189349827|ref|YP_001945455.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616] gi|221201252|ref|ZP_03574292.1| OmpA family protein [Burkholderia multivorans CGD2M] gi|221206294|ref|ZP_03579307.1| OmpA family protein [Burkholderia multivorans CGD2] gi|221213575|ref|ZP_03586549.1| OmpA family protein [Burkholderia multivorans CGD1] gi|254252935|ref|ZP_04946253.1| OmpA/MotB [Burkholderia dolosa AUO158] gi|124895544|gb|EAY69424.1| OmpA/MotB [Burkholderia dolosa AUO158] gi|160342864|gb|ABX15950.1| OmpA/MotB domain protein [Burkholderia multivorans ATCC 17616] gi|171098679|gb|EDT43474.1| OmpA/MotB domain protein [Burkholderia ambifaria MEX-5] gi|189333849|dbj|BAG42919.1| OOP family OmpA-OmpF porin [Burkholderia multivorans ATCC 17616] gi|221166364|gb|EED98836.1| OmpA family protein [Burkholderia multivorans CGD1] gi|221173603|gb|EEE06037.1| OmpA family protein [Burkholderia multivorans CGD2] gi|221179102|gb|EEE11509.1| OmpA family protein [Burkholderia multivorans CGD2M] Length = 222 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 96 QADALFDFDKATLKPLGKQKLDELASKIQGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++I G N N RR+++ V Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209 Query: 340 DRQ 342 Q Sbjct: 210 GTQ 212 >gi|115350969|ref|YP_772808.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria AMMD] gi|170698423|ref|ZP_02889496.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|172059974|ref|YP_001807626.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gi|115280957|gb|ABI86474.1| OmpA/MotB domain protein [Burkholderia ambifaria AMMD] gi|170136676|gb|EDT04931.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|171992491|gb|ACB63410.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 222 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 96 QADALFDFDKATLKPLGKQKLDELASKIQGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++I G N N RR+++ V Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209 Query: 340 DRQ 342 Q Sbjct: 210 GTQ 212 >gi|149375118|ref|ZP_01892890.1| OmpA/MotB domain protein [Marinobacter algicola DG893] gi|149360482|gb|EDM48934.1| OmpA/MotB domain protein [Marinobacter algicola DG893] Length = 192 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ E VL L + + I GH D R N L RA + Sbjct: 91 FDFDTAEIKAEAREVLVAHARFLQANPGQNVRIEGHADE---RGTKEYNLALGERRANAI 147 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 + L+ +G S + IS + + + +S+ + NRR++++ Sbjct: 148 ERFLIVNGASRGQTETIS-YGEEKPAVMGSSESAWAQNRRVELV 190 >gi|148547176|ref|YP_001267278.1| OmpA/MotB domain-containing protein [Pseudomonas putida F1] gi|148511234|gb|ABQ78094.1| OmpA/MotB domain protein [Pseudomonas putida F1] Length = 435 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291 F + S+ + + +Q++ E L + + G D +P R LS R Sbjct: 334 FQEGSARLDNKALRDVQRVAEYLRQAGKLQGKAVLVGFGDPKETPGRAAL-----LSRLR 388 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 A + + L + GV + +++G ++ NRR+++ V Sbjct: 389 AQAVRRELARGGVE---VLQVTGMGDELPVAGNEQEQGRLRNRRVEVWV 434 >gi|332290107|ref|YP_004420959.1| peptidoglycan-associated outer membrane lipoprotein [Gallibacterium anatis UMN179] gi|330433003|gb|AEC18062.1| peptidoglycan-associated outer membrane lipoprotein [Gallibacterium anatis UMN179] Length = 150 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 + + NT F PE +L + L ++ + + GHTD P N Sbjct: 41 ELQQRYNTVYFGFDKYDIQPEYAQLLDAHAQYLTDTSSKVQVEGHTD--PRGTPEY-NIA 97 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 L RA + L GV ++S IS + + + ++ + +RR Sbjct: 98 LGQRRADAVKSYLEGKGVQGGQLSTIS-YGEEKPAVLGHTEADYAKDRR 145 >gi|289673872|ref|ZP_06494762.1| OmpA/MotB [Pseudomonas syringae pv. syringae FF5] Length = 447 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKTSGKLDQHVTLVGFGDAKSDPERAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|197336852|ref|YP_002158687.1| OmpA family protein [Vibrio fischeri MJ11] gi|197314104|gb|ACH63553.1| OmpA family protein [Vibrio fischeri MJ11] Length = 274 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%) Query: 160 STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFET 219 + ++ E ++ A ++L K++ L V ++ Sbjct: 76 PATVHQAKQNEARIARELEGGLQLDAANDLVIQRNLLKRLERQLD-YVKRQETCQPPTDS 134 Query: 220 TRTGILISIIDQRNTPM-----FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273 I + + + + F +S+ P+ IV L + ++L H + I GH D Sbjct: 135 NNGNSDIELAQKIHDLLNRDNQFAFNSAELNPKYIVNLSEASQLLNQHKDFKLLITGHAD 194 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-NSANR 332 A N L+L+RA + L G+S+ RI S ++ ++P NR Sbjct: 195 AL---GEEDANQNLALERAKQVKRYLSIFGLSQQRIHVDSVGSNDPYLSGTEPHVRLTNR 251 Query: 333 RIDILVE 339 R+ I + Sbjct: 252 RVTIELL 258 >gi|183598397|ref|ZP_02959890.1| hypothetical protein PROSTU_01791 [Providencia stuartii ATCC 25827] gi|188020575|gb|EDU58615.1| hypothetical protein PROSTU_01791 [Providencia stuartii ATCC 25827] Length = 357 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 R+ +F+ + + PE L ++ L+ + + G TD N LS Sbjct: 229 RSDVLFNFNKATLKPEGQQALNELYNELSSIDPTQGRVLVVGFTDRI---GSQNYNLPLS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 RA S L+ GV I+ G + N + +RR++I Sbjct: 286 QKRAQSVVDYLVAKGVPASAIAA-EGRGKEDPVTGNKCDNVKGRAALIECLAPDRRVEIE 344 Query: 338 VE 339 ++ Sbjct: 345 IQ 346 >gi|92119081|ref|YP_578810.1| OmpA/MotB [Nitrobacter hamburgensis X14] gi|91801975|gb|ABE64350.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 673 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S P+ L+ I + + + +EV I GHTDA DN LS R Sbjct: 552 FATGSWDIPPDQAAKLRVIADGINRAISRNPSEVFLIEGHTDAV---GNDVDNLSLSDRR 608 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA ++L + G+ LK+ +D + NRR+ + Sbjct: 609 AQSAAELLTQQFQVPPENLVTQGYGEQNLKVETDGPSRENRRVTV 653 >gi|62185545|ref|YP_220330.1| putative peptidoglycan-associated protein (periplasmic) [Chlamydophila abortus S26/3] gi|62148612|emb|CAH64384.1| putative peptidoglycan-associated protein (periplasmic) [Chlamydophila abortus S26/3] Length = 191 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + + S + + I GHTD R A N L RA + Sbjct: 87 FATDSYTIKGEENLAILSSLVRQMQKSPKATLYIEGHTDE---RGAAAYNLALGARRANA 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 Q L+K G+S DR+ +S + + + + NRR + + R Sbjct: 144 VKQHLIKQGISADRLFTVS-YGKEQPINSGHNELAWQQNRRTEFKIHAR 191 >gi|268316443|ref|YP_003290162.1| OmpA/MotB domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333977|gb|ACY47774.1| OmpA/MotB domain protein [Rhodothermus marinus DSM 4252] Length = 496 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 + L D++ ++ E T ++ ++ + F+ S VL++ VL Sbjct: 361 NELGRDSVQARIVVEPTACDLISTL----ESVSFEFGRSTLTDSARAVLERNARVLQSCP 416 Query: 264 E-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR-ISKISGFAHHRLK 321 E V+ + G+TD + N LSL RA + Y + G+ +R I + G Sbjct: 417 ELVVQLVGYTD---YVGGEAFNALLSLRRALAVYNYYQQQGIEPERLIFR--GLGELPPP 471 Query: 322 IASDPMNS---ANRRIDILVED 340 + RR+D +V Sbjct: 472 CPNPADRPGCRELRRVDTIVIR 493 >gi|78065624|ref|YP_368393.1| OmpA/MotB family outer membrane protein [Burkholderia sp. 383] gi|77966369|gb|ABB07749.1| outer membrane protein, OmpA/MotB family [Burkholderia sp. 383] Length = 222 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 96 QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++I G N N RR+++ V Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209 Query: 340 DRQ 342 Q Sbjct: 210 GTQ 212 >gi|107022117|ref|YP_620444.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116689062|ref|YP_834685.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia HI2424] gi|170732350|ref|YP_001764297.1| OmpA/MotB domain-containing protein [Burkholderia cenocepacia MC0-3] gi|206561293|ref|YP_002232058.1| putative ompA family protein [Burkholderia cenocepacia J2315] gi|254245998|ref|ZP_04939319.1| Outer membrane protein, OmpA/MotB family [Burkholderia cenocepacia PC184] gi|105892306|gb|ABF75471.1| OmpA/MotB [Burkholderia cenocepacia AU 1054] gi|116647151|gb|ABK07792.1| OmpA/MotB domain protein [Burkholderia cenocepacia HI2424] gi|124870774|gb|EAY62490.1| Outer membrane protein, OmpA/MotB family [Burkholderia cenocepacia PC184] gi|169815592|gb|ACA90175.1| OmpA/MotB domain protein [Burkholderia cenocepacia MC0-3] gi|198037335|emb|CAR53262.1| putative ompA family protein [Burkholderia cenocepacia J2315] Length = 222 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 96 QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 152 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++I G N N RR+++ V Sbjct: 153 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 209 Query: 340 DRQ 342 Q Sbjct: 210 GTQ 212 >gi|262276102|ref|ZP_06053911.1| peptidoglycan-associated outer membrane lipoprotein [Grimontia hollisae CIP 101886] gi|262219910|gb|EEY71226.1| peptidoglycan-associated outer membrane lipoprotein [Grimontia hollisae CIP 101886] Length = 173 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFR 278 T I + + Q T F LP+ +L E L A++ + + GH D R Sbjct: 56 TEQEIRNNELRQSQTVYFSFDDYSVLPQFEDMLDAHAEFLRANADIKVVVEGHADE---R 112 Query: 279 NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333 N L RA + + L GV +IS +S + + + ++ NRR Sbjct: 113 GTPEYNIALGERRANAVAKYLQALGVPSSQISIVS-YGEEKPLVLGQGEDAYSKNRR 168 >gi|260581134|ref|ZP_05848955.1| outer membrane protein P5 [Haemophilus influenzae RdAW] gi|260092263|gb|EEW76205.1| outer membrane protein P5 [Haemophilus influenzae RdAW] Length = 353 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 240 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 297 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 349 >gi|229846196|ref|ZP_04466308.1| Outer membrane protein P5 [Haemophilus influenzae 7P49H1] gi|229811200|gb|EEP46917.1| Outer membrane protein P5 [Haemophilus influenzae 7P49H1] Length = 359 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 246 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 303 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355 >gi|206603884|gb|EDZ40364.1| Putative Outer membrane protein, OmpAfamily [Leptospirillum sp. Group II '5-way CG'] Length = 521 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 224 ILISIIDQRNTPM-FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIA 281 +L I D + F + +L++ +L I + GH+D R Sbjct: 75 LLRRIQDLSRQDLSFATGKADLNQRDRRILREDAVLLKRYPKVEILLIGHSDE---RGNE 131 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 N+RL LDR SA Q L G++ RI +S Sbjct: 132 IYNFRLGLDRGKSARQFLEDLGIAASRIHVVS 163 >gi|145641242|ref|ZP_01796822.1| Outer membrane protein P5 [Haemophilus influenzae R3021] gi|145274079|gb|EDK13945.1| Outer membrane protein P5 [Haemophilus influenzae 22.4-21] Length = 358 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 302 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354 >gi|145639315|ref|ZP_01794921.1| Outer membrane protein P5 [Haemophilus influenzae PittII] gi|145271618|gb|EDK11529.1| Outer membrane protein P5 [Haemophilus influenzae PittII] Length = 361 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 248 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 304 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 305 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 357 >gi|145631210|ref|ZP_01786983.1| Outer membrane protein P5 [Haemophilus influenzae R3021] gi|144983137|gb|EDJ90632.1| Outer membrane protein P5 [Haemophilus influenzae R3021] Length = 314 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 201 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 257 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 258 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 310 >gi|145627861|ref|ZP_01783662.1| Outer membrane protein P5 [Haemophilus influenzae 22.1-21] gi|144979636|gb|EDJ89295.1| Outer membrane protein P5 [Haemophilus influenzae 22.1-21] Length = 358 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 302 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354 >gi|37704660|gb|AAR01602.1| OprF [Pseudomonas sp. MFY160] Length = 316 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ + ++ + + + + + GHTD+ N +LS RA + Sbjct: 233 FDFDKSVVKTNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERRANAV 289 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 290 KQVLTNQYGVESARVQSV-GYGESRPVA 316 >gi|330830632|ref|YP_004393584.1| major outer membrane protein OmpAII [Aeromonas veronii B565] gi|328805768|gb|AEB50967.1| Major outer membrane protein OmpAII [Aeromonas veronii B565] Length = 345 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F + E + L + + + + G+TD +N RLS RA Sbjct: 225 LFAFGKADLKQEGMSALDDLYQQIVDVQPKDGSAVVIGYTDRI---GSDANNQRLSEARA 281 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + L+ G+ D++ I G + D + + +RR+++ V Sbjct: 282 QTVADFLISKGLPADKV-SIQGNGASNPVTGNQCDAIKAKAALIDCLGPDRRVEVRVTGV 340 Query: 342 QG 343 QG Sbjct: 341 QG 342 >gi|307726644|ref|YP_003909857.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307587169|gb|ADN60566.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 357 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 16/111 (14%) Query: 237 FDKS-SSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD + LP L ++ L + ++I G+TD N RLSL RA Sbjct: 245 FDGGNDAAMLPAGRRELDEVARSLKTVSALRELAITGYTDRL---GENAHNQRLSLQRAQ 301 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRIDI 336 + + L GV+ + G A + + NRR++I Sbjct: 302 TVARYLRAHGVTSP--ISVRGLASAKPVTECRQTRRDELVRCLAPNRRVEI 350 >gi|242240116|ref|YP_002988297.1| outer membrane protein A [Dickeya dadantii Ech703] gi|242132173|gb|ACS86475.1| OmpA domain protein transmembrane region-containing protein [Dickeya dadantii Ech703] Length = 354 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G TD + N LS Sbjct: 226 KSDVLFNFNKATLKPEGQRSLDQLYTQLSTIDPKDGSVVVLGFTDRL---GSDQYNQTLS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDIL 337 RA S L+ GV ++IS G A+ +A +RR++I Sbjct: 283 TKRAQSVVDYLVHKGVPANKISA-RGMGKANPVSGATCANVKARAALIDCLAPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|240948744|ref|ZP_04753116.1| lipoprotein Plp4 [Actinobacillus minor NM305] gi|240296960|gb|EER47538.1| lipoprotein Plp4 [Actinobacillus minor NM305] Length = 282 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + V+ + L S + + + G+TD N LS R Sbjct: 141 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAQQVKVAGYTDRL---GSVNYNLDLSQRR 197 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336 A L++ GV +I + G A+ + + NRR++I Sbjct: 198 ANMVKARLVQQGV-TAQIEAVGYGKANQVKACDGESGQALRDCLRPNRRVEI 248 >gi|283955187|ref|ZP_06372689.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 414] gi|283793400|gb|EFC32167.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 414] Length = 247 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 32/190 (16%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ K+ K+ + KS KEE+ L L + + + KRLQ + + + A Sbjct: 60 STQTVKEESKTQEKYKSTAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQI----AL 115 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266 N+ V F++ S+ + L+++ E+ + I Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 IRG+TD S + L+ RA + + ++ G + I I + + +P Sbjct: 156 EIRGYTDNSDSILRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210 Query: 327 MNSANRRIDI 336 N R++I Sbjct: 211 QTLENNRVEI 220 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 IFD + ++K + S +LK Q + ++ L Sbjct: 53 ----VKIFDYTSTQTVKEESKTQEKYKSTAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183 S + E+G S D++ + + +LPP +K +I Sbjct: 109 SDNQIALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157 >gi|251792544|ref|YP_003007270.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700] gi|247533937|gb|ACS97183.1| outer membrane protein A [Aggregatibacter aphrophilus NJ8700] Length = 363 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 18/119 (15%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + + P L I +A +++ G+TD + A N +LS RA + Sbjct: 250 FAFNKANLRPNAQATLDGIYSEIAKVNKPN-VAVSGYTD--RIGSDAY-NQKLSQKRAET 305 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDILVEDRQ 342 L+ GV++D IS +G+ + + +RR++I V Q Sbjct: 306 VANYLVSKGVAQDTISA-TGYGKANPVTGNQCNAVKGRKALIACLADDRRVEIAVNGNQ 363 >gi|150006545|ref|YP_001301289.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482] gi|254881554|ref|ZP_05254264.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA] gi|294778836|ref|ZP_06744253.1| OmpA family protein [Bacteroides vulgatus PC510] gi|319642938|ref|ZP_07997574.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A] gi|149934969|gb|ABR41667.1| major outer membrane protein OmpA [Bacteroides vulgatus ATCC 8482] gi|254834347|gb|EET14656.1| major outer membrane protein OmpA [Bacteroides sp. 4_3_47FAA] gi|294447289|gb|EFG15872.1| OmpA family protein [Bacteroides vulgatus PC510] gi|317385486|gb|EFV66429.1| major outer membrane protein OmpA [Bacteroides sp. 3_1_40A] Length = 364 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 12/148 (8%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + AK + V +V+ V E + I F + E +V + Sbjct: 223 KKFAKVEDRVVEKEVIKEVVREVPKEVVKEVIKEVPSAAEVAIFFKIGKAKISSEGMVNV 282 Query: 253 QKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 Q + + + + I G D + A N LS RA + Y L+ GV E ++ K Sbjct: 283 QLMAKAIKANPNAKYKIAGFADKA--TGSASFNQTLSEKRAQAVYDALVAEGVKESQLEK 340 Query: 312 ISGFAHHRLKIASDPMNSAN--RRIDIL 337 ++ +D M N R+ IL Sbjct: 341 VAMGG-------TDNMFGKNYLNRVVIL 361 >gi|57505391|ref|ZP_00371319.1| probable flagellar motor protein Cj0336c [Campylobacter upsaliensis RM3195] gi|57016216|gb|EAL53002.1| probable flagellar motor protein Cj0336c [Campylobacter upsaliensis RM3195] Length = 244 Score = 56.8 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 4/186 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F + Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISETNPAKVEALKTEFVKI-FDY 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T + QN + + ++ E + + ++ + K + EN I Sbjct: 59 TTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQETIKKLKAALDQSENQIALNLP 118 Query: 137 SQQSEHCKNSLTRDSEKGKD-LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 S+ E KNS S +D L + L S+ + + + A++ + + Sbjct: 119 SR-VEFAKNSAEIVSADMQDYLKRMAQLSLSLPPQAKIEIRGFTDNSDSALRSFELGYER 177 Query: 196 AKKISS 201 AK + + Sbjct: 178 AKAVMN 183 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 30/208 (14%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE--KILAMKRKKR 191 +N + E K + + T+ + + P E K L + +++ Sbjct: 39 ETNPAKVEALKTEFVKIFDYTTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQET 98 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIV 250 ++ L + + +A N+ V F K+S+ + Sbjct: 99 IKKLKAALDQS-ENQIALNLPSRVE--------------------FAKNSAEIVSADMQD 137 Query: 251 VLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+++ ++ I IRG TD + A ++ L +RA + + GVS ++ Sbjct: 138 YLKRMAQLSLSLPPQAKIEIRGFTDN---SDSALRSFELGYERAKAVMNYFIDGGVSVEK 194 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDI 336 + I + + + + AN R++I Sbjct: 195 L-SIKSYGFNEPLLNHASSDLANNRVEI 221 >gi|162451716|ref|YP_001614084.1| hypothetical protein sce3444 [Sorangium cellulosum 'So ce 56'] gi|161162298|emb|CAN93603.1| putative membrane protein [Sorangium cellulosum 'So ce 56'] Length = 357 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F P + +L + ++L ++ + + + + N A L+ RA + Sbjct: 135 FVAGKPEFEPASQGLLANVAQILKDHPQIQFVEVAAY--SEKVGNDAATV-TLTKKRAEA 191 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDRQG 343 + L GV ++R+ + +G+ H + + NRR++I + G Sbjct: 192 VVKALTALGVEKNRV-RAAGYGAHCATDPGETEEAKEKNRRVEIKIMRLDG 241 >gi|19881367|gb|AAM00926.1|AF491818_1 hemagglutinin antigen [Avibacterium paragallinarum] gi|19881373|gb|AAM00929.1|AF491821_1 hemagglutinin antigen [Avibacterium paragallinarum] gi|19881385|gb|AAM00935.1|AF491827_1 hemagglutinin antigen [Avibacterium paragallinarum] Length = 341 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE VL I +A + + + G+TD N +LS RA + Sbjct: 228 FAFGKANLRPEAQNVLDGIYGEIAQLKSVQVDLAGYTDRI---GSEAANLKLSQRRADTV 284 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVE 339 L+ GV+++ IS +G+ + D + +RR++I V+ Sbjct: 285 ANYLVSKGVAQEVISS-TGYGEANPVTGAKCDAVKGRKALIACLADDRRVEISVK 338 >gi|239833809|ref|ZP_04682137.1| OmpA/MotB domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239821872|gb|EEQ93441.1| OmpA/MotB domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 765 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ L+K+ +VLA I GHTDA R N LS R Sbjct: 651 FATGSAEVSMSQAKTLRKVATAMQKVLAKDPGETFFIEGHTDAV---GSDRSNLVLSDKR 707 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + G+ LKI + NRR+ I Sbjct: 708 AESVASLLTEVYDIPAENLVTQGYGERFLKIRTQAAEQENRRVTI 752 >gi|39995135|ref|NP_951086.1| OmpA domain-containing protein [Geobacter sulfurreducens PCA] gi|39981897|gb|AAR33359.1| OmpA domain protein [Geobacter sulfurreducens PCA] gi|298504165|gb|ADI82888.1| OmpA family outer membrane lipoprotein [Geobacter sulfurreducens KN400] Length = 194 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 FD + + L + E +L +SI GH D R N L Sbjct: 87 ERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNAKVSIEGHCDE---RGSDEYNLALGEK 143 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 RA +A L+ GV R+S IS + + + NRR + ++ Sbjct: 144 RAKTAMNYLITLGVPAARLSIIS-YGEEKPLDPGHTEEAWAKNRRDEFVI 192 >gi|262068311|ref|ZP_06027923.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693] gi|291377972|gb|EFE85490.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693] Length = 122 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWR 286 +I+ FD S+ P+ +L + + + + +++ GHTD+ + N Sbjct: 28 TIVLDERALNFDFDKSVVKPQYFEMLNNLKDFIEQNNYEVTLEGHTDS--IGSNQY-NIG 84 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 LS RA + L++ G++E+RI I + Sbjct: 85 LSRRRAEAVKAKLIEFGLAEERIVGIEAKGEEYPVATN 122 >gi|238896049|ref|YP_002920785.1| putative outer membrane lipoprotein [Klebsiella pneumoniae NTUH-K2044] gi|262043847|ref|ZP_06016937.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|238548367|dbj|BAH64718.1| iron-regulated membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038817|gb|EEW39998.1| OmpA family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 160 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 ++ +FDK+ P++ + + LA + + GHTD N LSL R Sbjct: 52 DSILFDKNDYRLRPDSRQQITTMASRLAATGITHSRLEGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338 A S G R + ++ G ++D + NRR+ +++ Sbjct: 109 ANSVADA-WAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVI 157 >gi|330831536|ref|YP_004394488.1| outer membrane protein A [Aeromonas veronii B565] gi|328806672|gb|AEB51871.1| Outer membrane protein A [Aeromonas veronii B565] Length = 364 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 17/117 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRA 292 +F+ + + P L + +++A + V ++ G+TD N LS RA Sbjct: 245 LFEFNKATLKPAANQALDALFSQIVAANPKDGVATVIGYTDRI---GSDNYNLALSEKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD----------PMNSANRRIDILVE 339 S L+ G+ D++ ++ G S + +RR++I +E Sbjct: 302 QSVASYLVSKGLYADKV-RVEGRGKANPVTGSSCASRSKQELIACLAPDRRVEIHLE 357 >gi|315104919|gb|EFT76895.1| OmpA family protein [Propionibacterium acnes HL050PA2] Length = 284 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 11/175 (6%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 SQ N + D G L T +++ N +P L Sbjct: 101 FSTPPLRADVSQVDVTVANRIFHDVPVGDGLLGPTIDKEAATGRWNKGMPLGVAWPALDP 160 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 K + D++K +++ ++ + T+ + I D + +FD S + P Sbjct: 161 KDLAGV-DVSKFVNALVTTT--GDASDASRERVTKESMKI---DLDASVLFDLDSDVVKP 214 Query: 247 ETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 + ++ + + L + I + G+TD+ A N LS RA S +VL Sbjct: 215 AGLQIIDRTAKQLVARKVSGKIEVTGYTDS---SGSASHNLDLSRRRAASVAKVL 266 >gi|163733522|ref|ZP_02140965.1| peptidoglycan-associated lipoprotein, putative [Roseobacter litoralis Och 149] gi|161393310|gb|EDQ17636.1| peptidoglycan-associated lipoprotein, putative [Roseobacter litoralis Och 149] Length = 173 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F S ++ + +LA++ I GH D N L R Sbjct: 63 DRVLFSVDESAINAVGQTTVEGQAQWLLANTDYTAVIEGHADEQ---GTREYNVALGARR 119 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 A + + L+ GV+ +R+ +S + R +S+ + NRR Sbjct: 120 ANAVREYLISRGVAGNRLQTVS-YGKERPIEICSSEECYAKNRR 162 >gi|114563969|ref|YP_751483.1| OmpA/MotB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335262|gb|ABI72644.1| OmpA/MotB domain protein [Shewanella frigidimarina NCIMB 400] Length = 215 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ L L ++ + + I + GHTD + R LSL RA + Sbjct: 111 FDFDKSVVLLTQRPTLVRVQQYIEQHPQVAIRLEGHTDNIGSDAVNRS---LSLKRAATI 167 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 +L+ + +I G ++ + NRR++ ++ Sbjct: 168 KDLLVNEYQFQPTSIEIVGMSNKNPVADNATIEGRQRNRRVEFII 212 >gi|302186190|ref|ZP_07262863.1| OmpA/MotB [Pseudomonas syringae pv. syringae 642] Length = 447 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447 >gi|329962616|ref|ZP_08300564.1| OmpA family protein [Bacteroides fluxus YIT 12057] gi|328529647|gb|EGF56545.1| OmpA family protein [Bacteroides fluxus YIT 12057] Length = 397 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 182 KILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTP---MF 237 ++++ +QD ++ + L A + E +I + D P F Sbjct: 241 QLVSQAELAIMQDQLAELGAANQQLQNALTAAQNQPVEEVAETEVI-LTDPDIAPRTVFF 299 Query: 238 DKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 + S+ + L + + + ++ G+ D++ N LSL RA + Sbjct: 300 NIGSAEVSAREAMNLSYLADQMKQFPNATYTVNGYADSATGTPAF--NKELSLKRAQAVV 357 Query: 297 QVLMKS-GVSEDRI 309 VL+K G+ DR+ Sbjct: 358 DVLVKQYGIPADRL 371 >gi|90408384|ref|ZP_01216546.1| OmpA family protein [Psychromonas sp. CNPT3] gi|90310477|gb|EAS38600.1| OmpA family protein [Psychromonas sp. CNPT3] Length = 201 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S + + ++ + + + + ++I GHT R A N LS RA Sbjct: 79 FETDSYVVSSNYLPKIEHLSQFMHEYPQTTVTIEGHTSH---RGTASYNKILSQQRADMI 135 Query: 296 YQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSANRRI--DI 336 ++L++ V RI+ I G+ +L + D ++ NRRI +I Sbjct: 136 KKILIEEYQVEASRITAI-GYGFDQLLLEGDDEYVHARNRRIVAEI 180 >gi|323496692|ref|ZP_08101743.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326] gi|323318274|gb|EGA71234.1| putative outer membrane protein [Vibrio sinaloensis DSM 21326] Length = 204 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLS 288 +++ +F S P +Q + E L + + I I+G AS N LS Sbjct: 78 ERQLRILFANDSYEINPIFSDQIQTMAEFLEKYQSASIQIQGF--ASKVGEPEY-NLELS 134 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 RA++ L+ V R+ I G+ RL+ + ++ NR++ Sbjct: 135 KKRAHAVEDELLSYYVEPSRV-SIIGYGETRLEAQGDDETSHALNRKVT 182 >gi|291278841|ref|YP_003495676.1| hypothetical protein DEFDS_0426 [Deferribacter desulfuricans SSM1] gi|290753543|dbj|BAI79920.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 200 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 268 IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIAS 324 I GHTD+ P + N R+N+ LS+ RA +++ K SG+ + +KI GF +++ Sbjct: 126 IYGHTDSLPVKPNNKYRNNYELSILRAEFIKELIRKYSGIDSN--AKIVGFGAFFPLVSN 183 Query: 325 D-PMNSANRRIDI 336 NRR+++ Sbjct: 184 GLQGAEKNRRVEL 196 >gi|269123085|ref|YP_003305662.1| YadA domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314411|gb|ACZ00785.1| YadA domain protein [Streptobacillus moniliformis DSM 12112] Length = 2075 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 27/187 (14%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 L + + K + ++ N + +K K L++L KIS V + I Sbjct: 1908 NSLDELDGINKKLEEQNNKLIAQNNKLNEKRGDLSKELKELKDKIS------VIEKIKMN 1961 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHT 272 T G + I +L+ I L + I I G+T Sbjct: 1962 EDDLYTLDGYRLGIH-------------ELTKSQEEMLKNIVRELNENYKNRKIYITGYT 2008 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED---RISKISGFAHHRLKIASDPMNS 329 D + N L L RA + L + G+ R SG+ + S S Sbjct: 2009 DNV---SGENLNLELGLKRANVVAKKLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRS 2065 Query: 330 ANRRIDI 336 +NRR++I Sbjct: 2066 SNRRVEI 2072 >gi|150396796|ref|YP_001327263.1| OmpA/MotB domain-containing protein [Sinorhizobium medicae WSM419] gi|150028311|gb|ABR60428.1| OmpA/MotB domain protein [Sinorhizobium medicae WSM419] Length = 720 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V + + +VL I GHTDA + N LS +R Sbjct: 606 FATGSAEVSMSQAKTMRKVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 662 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + GV + + G+ LKI +D NRR+ I Sbjct: 663 AESVAVLLTEVYGVPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 707 >gi|330982164|gb|EGH80267.1| OmpA/MotB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 447 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKTSGKLDQHVTLVGFGDAKSDPERAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|88861307|ref|ZP_01135938.1| outer membrane protein A [Pseudoalteromonas tunicata D2] gi|88816686|gb|EAR26510.1| outer membrane protein A [Pseudoalteromonas tunicata D2] Length = 358 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 9/106 (8%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD S L+ + LA + + ++ G+TD+ N +L+L RA Sbjct: 252 FALFDFDKSAVKE--TQALKDLAAHLAANPQAQAAVTGYTDSQ---GSKEYNEKLALRRA 306 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + + L +GV+ +++ + L ++ + NRR+ I Sbjct: 307 NAIAKYLTANGVNASQLT-VKSVGETDLFASNATIAERLNNRRVTI 351 >gi|190574772|ref|YP_001972617.1| putative OmpA family protein [Stenotrophomonas maltophilia K279a] gi|190012694|emb|CAQ46322.1| putative OmpA family protein [Stenotrophomonas maltophilia K279a] Length = 300 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 14/111 (12%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S++ E +Q I +V + I + G+TD + + N LS RA Sbjct: 187 LFGFDSAVLSAEGQQAVQGILAQVREAAQVQSIRVTGYTD--RIGSASY-NQTLSQQRAE 243 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 + L++ GV IS G + + N NRR+ I Sbjct: 244 AVRSALVQGGVPAASISA-EGRGAAEPIVQCEQRNRRELIACLAPNRRVQI 293 >gi|170720335|ref|YP_001748023.1| OmpA/MotB domain-containing protein [Pseudomonas putida W619] gi|169758338|gb|ACA71654.1| OmpA/MotB domain protein [Pseudomonas putida W619] Length = 327 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 24/217 (11%) Query: 132 FYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKR 191 + S+ + K ++T K +S ++ KI + Sbjct: 36 PFGSDEVAEQEVKQAVTEKVAKADAKSESASRWWWPFGGDDKQAKGPVVPKIDEKATQAW 95 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ----RNTPMFDKSSSIPLPE 247 L K+ + + E ++++I + P ++ LP Sbjct: 96 LDQYEPKLREAIKD-------SKLELERRENVLVVTIPADSSYNPDRP------NMLLPM 142 Query: 248 TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE 306 ++ + ++ + + + + + GH D A N +LSL+RA S + SG+ Sbjct: 143 SLGPITRVAKAVEGDPKTAVLVLGHADT---SGAAATNQKLSLERAASVSAIFRLSGLKR 199 Query: 307 DRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 DR+ + G + A+D + NRR+++L+ + Sbjct: 200 DRL-SLKGMGSEMPRAANDSVEGRALNRRVEMLLTPQ 235 >gi|217970135|ref|YP_002355369.1| OmpA/MotB domain protein [Thauera sp. MZ1T] gi|217507462|gb|ACK54473.1| OmpA/MotB domain protein [Thauera sp. MZ1T] Length = 232 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ E L ++ + + GHTD N RLS RA + Sbjct: 118 LFDFDKAVLKAEGKAKLDQLAAQAKSLKLEVILAVGHTDRL---GSNTYNQRLSERRAAA 174 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD----PMNSAN-------RRIDILV 338 L+ GV +R+ G + + +A RR+++ V Sbjct: 175 VKTYLVSKGVDANRVY-TEGKGETQPVTGNKCDKVGGRAAQISCLQPDRRVEVEV 228 >gi|163795725|ref|ZP_02189690.1| OmpA/MotB [alpha proteobacterium BAL199] gi|159179021|gb|EDP63556.1| OmpA/MotB [alpha proteobacterium BAL199] Length = 313 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 21/229 (9%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENY 173 + G+ + + NI + + E + L + G+ + + Sbjct: 81 RAGAGDTPMPVELANRNIANPTKLAELEAARADLVSTLQTGRTIAP-------VEAGVAQ 133 Query: 174 FLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN 233 E+ + + + L A V +ET + + RN Sbjct: 134 AKFDCWAEQQEEGHQFDHIAACQTAYLMAMEALKAAMQPTNVTYETVQQEV------ARN 187 Query: 234 TPMFDKSSSIPLPETIVVLQK-IGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 T FD P+ L K + E+ A + I GHTD N LS RA Sbjct: 188 TVYFDWDKDTIRPDQQAALDKFLAEMKAIGPVTLYIEGHTDT---SGPNDYNAELSRRRA 244 Query: 293 YSAYQVLMKSGVSEDRI--SKISGFAHHRLKIASDPM--NSANRRIDIL 337 + L + G++ + ++ + L +A+ NRR+ I+ Sbjct: 245 ENVRTDLRQQGMTVGEVKDLQLLAKGENDLAVATGDGVKEQQNRRVVII 293 >gi|138894940|ref|YP_001125393.1| putative periplasmic protein [Geobacillus thermodenitrificans NG80-2] gi|196248493|ref|ZP_03147194.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16] gi|134266453|gb|ABO66648.1| Putative periplasmic protein [Geobacillus thermodenitrificans NG80-2] gi|196212218|gb|EDY06976.1| OmpA/MotB domain protein [Geobacillus sp. G11MC16] Length = 223 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 33/175 (18%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ------RNTPMFDKSSS 242 ++ L++ KKI +S V I++ + ++ + I I Q + +F+ S+ Sbjct: 38 RELLEEKEKKIEQVVS--VKSEIIRALTEAFKQSNMTIEIDQQTGAIRFPGSILFESDSA 95 Query: 243 IPLPETIVVLQK-----IGEVLAHS-TEVIS---IRGHTDASPFRNIARDNWRLSLDRAY 293 PE LQ+ +G +L IS I GHTD + N LS RAY Sbjct: 96 EISPEGKKFLQQFIPKYMGILLQDRFQNEISSIIIEGHTDRN---GTYMYNMSLSQRRAY 152 Query: 294 SAYQVLMKSGVS-------EDRISKISGFAHHRLKIAS----DPMNSANRRIDIL 337 + + + + +G + DP S RR++ L Sbjct: 153 AVLEYIYSKEFPNFKERELSKKYITANGRSFSSPLTDENGKYDPDRS--RRVEFL 205 >gi|170693710|ref|ZP_02884868.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] gi|170141492|gb|EDT09662.1| OmpA/MotB domain protein [Burkholderia graminis C4D1M] Length = 215 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD ++ P L + + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKAVLKPAGKEKLDDLASKIQGLNLEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ G+ +RI G N N RR+++ V Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|134295071|ref|YP_001118806.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134138228|gb|ABO53971.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 223 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ G+ ++I G N N RR+++ V Sbjct: 154 RAQAVKSYLVSKGIPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 210 Query: 340 DRQ 342 Q Sbjct: 211 GTQ 213 >gi|307729365|ref|YP_003906589.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|307583900|gb|ADN57298.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] Length = 242 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 17/127 (13%) Query: 229 IDQRNTPMFDKSSSI---PLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARD 283 + +F S LP L +I + V I++ GHTD Sbjct: 120 FSLESDTLFPFGKSSRESMLPAAKARLDEIAARIRQHEHVSAITVVGHTDRL---GPESI 176 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRID 335 N LSL RA + L+ G+ + G + ++ +R + Sbjct: 177 NGPLSLARANTVRDYLVAHGLDGSIVLA-KGVGSSEPRTHCAEHDARALIACLQEDRYVS 235 Query: 336 ILVEDRQ 342 I VE R+ Sbjct: 236 ITVEGRK 242 >gi|145635014|ref|ZP_01790720.1| outer membrane protein P5 [Haemophilus influenzae PittAA] gi|145267622|gb|EDK07620.1| outer membrane protein P5 [Haemophilus influenzae PittAA] Length = 355 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 242 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 298 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 299 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 351 >gi|89897844|ref|YP_514954.1| outer membrane protein [Chlamydophila felis Fe/C-56] gi|89331216|dbj|BAE80809.1| outer membrane protein [Chlamydophila felis Fe/C-56] Length = 191 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + + S + + I GHTD R A N L RA + Sbjct: 87 FATDSYTIKGEENLAILSSLVRQMQKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 Q L+K G+S +R+ IS + + + + NRR + V R Sbjct: 144 VKQHLIKQGISPERLFTIS-YGKEQPINSGHNELAWQQNRRTEFKVHAR 191 >gi|261252913|ref|ZP_05945486.1| outer membrane protein [Vibrio orientalis CIP 102891] gi|260936304|gb|EEX92293.1| outer membrane protein [Vibrio orientalis CIP 102891] Length = 203 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F SSI P + ++++ E L I ++G+ AS N +LS RA + Sbjct: 83 LFQNDSSIIQPMFLAQIREMSEFLEAYPSTSIELQGY--ASKVGKAEY-NQKLSERRAEA 139 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRRI 334 L+ +GVS R+ +I GF RL + ++ NR++ Sbjct: 140 VEAALLDNGVSSSRV-RIVGFGDTRLDELGDDEVSHAMNRKV 180 >gi|84515731|ref|ZP_01003092.1| OmpA/MotB family protein [Loktanella vestfoldensis SKA53] gi|84510173|gb|EAQ06629.1| OmpA/MotB family protein [Loktanella vestfoldensis SKA53] Length = 307 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ L ++ LA + +++ GHTD+ N LS RA + Sbjct: 202 FTIGSAQLSEAAFASLAELAAYLAAYPDRSVALVGHTDS---AGALDINIALSQRRARAV 258 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVED 340 L+ R G + ++ + ANRR++++V Sbjct: 259 LDRLVTRHGVNRRQLAAEGMGYLAPIASNQTETGRDANRRVEVIVTS 305 >gi|327252310|gb|EGE63982.1| ompA family protein [Escherichia coli STEC_7v] Length = 127 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 19 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 75 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G R G ++ + NRR+ +++ Sbjct: 76 ANVVADAWAMGGQIPRRNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 126 >gi|295110189|emb|CBL24142.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Ruminococcus obeum A2-162] Length = 331 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 102/338 (30%), Gaps = 67/338 (19%) Query: 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTA 79 + N W+ Y+D M ++ F+++ + Sbjct: 2 RKKKKSEGNGFNVWR-SYSDMMAGVLLLFVLIMCVTLFQAQK------------------ 42 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 + E + ++I E T+ +D + + + Q Q Sbjct: 43 --------SYNESLQERDEKIAIQEQYTQELLDKQNAIDEKDETLQN------------Q 82 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 E K + +E+ K L K N L ++ ++ ++ + Sbjct: 83 DEQLKTQDEKLAEQQKQLEALAAKLKEQESTLNAQQTALDEKTAQLKDQQVQIDQIIGVK 142 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL 259 + + L + + + +++ + MFD + L++I + Sbjct: 143 ADVIEALKNEFSKNNINVDIDAQTGALTL---EASVMFDYDQAELTDSGKQALEQILPIY 199 Query: 260 ---------AHSTEVISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVLM--------- 300 I I G+TD + N +LS R+ + Q L+ Sbjct: 200 CKVLLQDDYKDYLAEIIIDGYTD----TDGDYSYNLQLSQQRSLAVAQYLIDIQGNFLND 255 Query: 301 KSGVSEDRISKISG--FAHHRLKIASDPMNSANRRIDI 336 + ++ ++G A+ L + A+RR+++ Sbjct: 256 EQSQELEKYLTVNGHSMANPVLDADGNVDKDASRRVEV 293 >gi|261401169|ref|ZP_05987294.1| OmpA family protein [Neisseria lactamica ATCC 23970] gi|269208842|gb|EEZ75297.1| OmpA family protein [Neisseria lactamica ATCC 23970] gi|309379032|emb|CBX22334.1| reduction-modifiable protein of the meningococcus [Neisseria lactamica Y92-1009] Length = 230 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + LA + + + GHTD F + N LS RA Sbjct: 94 LFGFDKDSLRAEAQDNLKVLAQRLAQTNVQSVRVEGHTD---FMGSEKYNQALSERRANV 150 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV + + +G + Sbjct: 151 VANYLVSNGVPASK-TSAAGLGESQ 174 >gi|68249712|ref|YP_248824.1| outer membrane protein P5 [Haemophilus influenzae 86-028NP] gi|68057911|gb|AAX88164.1| Outer membrane protein P5 [Haemophilus influenzae 86-028NP] Length = 359 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L + ++ + +++ G+TD + A + +LS +RA S Sbjct: 246 FAFGKANLKPQAQATLDSVYGEISQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 302 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 303 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 355 >gi|269962895|ref|ZP_06177235.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832449|gb|EEZ86568.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 301 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD S PE + L L I + GHTD +++ N L+ RA Sbjct: 188 TPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTD--QVGSLSY-NEELAERRAQ 244 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + L + ++ F + I + N+ NRR Sbjct: 245 TVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRR 286 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD SI V L + + I+I GHTD F+ N +LS+ RA S Sbjct: 62 FDFDKSIIREADAVSLDAFIRDIQGLSGRITIVGHTD---FKGSDEYNEKLSMRRAESVE 118 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 L + E ++ F + SD + NRR Sbjct: 119 AYLQQQLDPEQYDWEVKHFGESQPLALGKSDQARAENRR 157 >gi|126661869|ref|ZP_01732868.1| possible outer membrane protein [Flavobacteria bacterium BAL38] gi|126625248|gb|EAZ95937.1| possible outer membrane protein [Flavobacteria bacterium BAL38] Length = 295 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLD 290 N F S I +PE++ V++++ E ++AH I I+GH + D ++L Sbjct: 186 MNNLYFYDRSGIFVPESLPVMEELLEFMIAHPKVKIEIQGHICCQ----LGEDPEDIALI 241 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRL----KIASDPMNSANRRIDILVED 340 RA + + L+ + + + R+ F + ++ + NRR++IL+ + Sbjct: 242 RAIAVHNYLVANDIDDKRLM-YKSFGSTQPLHKIPEKNEKERNENRRVEILILE 294 >gi|323494859|ref|ZP_08099951.1| OmpA family protein [Vibrio brasiliensis LMG 20546] gi|323310823|gb|EGA63995.1| OmpA family protein [Vibrio brasiliensis LMG 20546] Length = 296 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S + + ++ + ISI GHTD ++ N +LSL RA + Sbjct: 60 FDFDKSELKEQDKQSIDQLMASIGKLHGQISIVGHTD---YQGSDDYNVKLSLRRAEAVK 116 Query: 297 QVLMKSGVSEDRIS-KISGFAHHRLKI--ASDPMNSANRR 333 + + R ++ + + + S N+ NRR Sbjct: 117 AYMQSK-LDASRYDWEVKYYGESKPLVEGVSKQANAENRR 155 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD + P L + L + I GHTD ++ N +L+ RA S Sbjct: 189 FDFDKAQLNPADKASLDEFASNLTGLNGRVLIAGHTD---YQGSISYNEKLAQLRAESVM 245 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333 Q L + ++ F + N+ NRR Sbjct: 246 QYLQTKLDPSQFVWEVKSFGELNPVTQEQDLDANALNRR 284 >gi|319899363|ref|YP_004159460.1| Outer membrane lipoprotein omp16 homolog precursor [Bartonella clarridgeiae 73] gi|319403331|emb|CBI76890.1| Outer membrane lipoprotein omp16 homolog precursor [Bartonella clarridgeiae 73] Length = 172 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 7/109 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + F +SS + +L + E L ++I GH D R N L R Sbjct: 62 DRVFFSLNSSSIELDAEYILARQAEWLLRYPHYFVTIEGHADE---RGTREYNLALGQRR 118 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILV 338 A + L+ GVS R+ IS + R D ++ + NRR ++V Sbjct: 119 AVAVRDHLISLGVSSQRMKTIS-YGKERPVALCDDISCWNQNRRAVLVV 166 >gi|294631150|ref|ZP_06709710.1| secreted protein [Streptomyces sp. e14] gi|292834483|gb|EFF92832.1| secreted protein [Streptomyces sp. e14] Length = 215 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 19/185 (10%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 T+ S + + P L + + K L I S + + + Sbjct: 40 PSEPPGTEASASAPVQVDPNDPDLKLPEGATLAAPKVLD-----IKSVVEDQGGEERRED 94 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTD 273 + T + +F K S+ + + I + + + + G TD Sbjct: 95 TNTDVT--------FALQAEVLFPKDSAKLSDQAKSRIDAIAQEIKKQHATQVRVFGFTD 146 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--N 331 LS RA + VL + D + G+A + + N Sbjct: 147 NLGSHEHGV---VLSKQRANAVQDVLSQELNDPDITFDVRGYAEDYPIADNSTEDGRKKN 203 Query: 332 RRIDI 336 RR+++ Sbjct: 204 RRVEV 208 >gi|15602451|ref|NP_245523.1| Plp4 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720855|gb|AAK02670.1| Plp4 [Pasteurella multocida subsp. multocida str. Pm70] Length = 272 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 12/112 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + V+ + L S + + G TD N +LS R Sbjct: 138 GDFLFDFNKDSLTAKGKEVVDSVATQLKASDAKEVKVAGFTDRL---GSEAYNLKLSQRR 194 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA-------NRRIDI 336 A L++ GV+ + I + ++K D +A NRR++I Sbjct: 195 ADRVKARLIEQGVAAN-IHAVGYGKAQQVKACDDVQGAALRDCLRPNRRVEI 245 >gi|333030282|ref|ZP_08458343.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011] gi|332740879|gb|EGJ71361.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011] Length = 227 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +SS P + L + ++L I++ G TD N +S RA S Sbjct: 113 LFDFNSSTLSPASRSSLSQFADILRQDPTIDIAVFGKTDKV---GTYDANMTVSNRRAQS 169 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L GV++ + + G + + A P + NR +DI Sbjct: 170 VKSFLQSQGVNDYQFKSVQGVGYTQYDEALLP--AQNRVVDI 209 >gi|194366090|ref|YP_002028700.1| OmpA/MotB domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194348894|gb|ACF52017.1| OmpA/MotB domain protein [Stenotrophomonas maltophilia R551-3] Length = 278 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 14/111 (12%) Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F S++ E +Q + +V A + I + G+TD + + N LS RA Sbjct: 165 LFGFDSAVLSAEGQQAVQGVLAQVREASQVQSIRVTGYTD--RIGSASY-NQALSQRRAE 221 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 + L++ GV IS G + + N NRR+ I Sbjct: 222 AVRSALVQGGVPAASISA-EGRGAAEPIVQCEQRNRRELIACLAPNRRVQI 271 >gi|119775220|ref|YP_927960.1| peptidoglycan-associated lipoprotein [Shewanella amazonensis SB2B] gi|119767720|gb|ABM00291.1| peptidoglycan-associated lipoprotein [Shewanella amazonensis SB2B] Length = 178 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 12/133 (9%) Query: 204 SGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST 263 +G V+ + + + + N FD S P + +L G L + Sbjct: 50 TGSVSGMLTPEEQMRMKQEELR-----RENVIYFDFDRSEVSPLSADILLAHGNYLLENP 104 Query: 264 -EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-- 320 I I GH+D R N L RA + + L GV ++S +S + + Sbjct: 105 SVRILIEGHSDE---RGTPEYNIALGERRAKAVAKYLQAMGVQPAQMSIVS-YGEEKPQD 160 Query: 321 KIASDPMNSANRR 333 +D S NRR Sbjct: 161 LTRTDEGFSKNRR 173 >gi|313667783|ref|YP_004048067.1| outer membrane protein class 4 (RmpM) [Neisseria lactamica ST-640] gi|313005245|emb|CBN86678.1| outer membrane protein class 4 (RmpM) [Neisseria lactamica 020-06] Length = 230 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + LA + + + GHTD F + N LS RA Sbjct: 94 LFGFDKDSLRAEAQDNLKVLAQRLAQTNVQSVRVEGHTD---FMGSEKYNQALSERRANV 150 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV + + +G + Sbjct: 151 VANYLVSNGVPASK-TSAAGLGESQ 174 >gi|260779320|ref|ZP_05888212.1| putative sodium-type flagellar protein MotY precursor [Vibrio coralliilyticus ATCC BAA-450] gi|260605484|gb|EEX31779.1| putative sodium-type flagellar protein MotY precursor [Vibrio coralliilyticus ATCC BAA-450] Length = 303 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + L + L + I G+TD N +S RA Sbjct: 181 FDLGQRHLTVQQTNTLGALYTYLRADKNISKVLIDGYTDNV---GSNVANLTISKQRADL 237 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI-LVEDRQG 343 + L KSGV RI + ++ + NRR+ + LV + + Sbjct: 238 VAKALKKSGVEAARIE-VRSHGSRYPIASNSTPEGQAKNRRVTLRLVRNDEA 288 >gi|260428791|ref|ZP_05782768.1| OmpA domain protein [Citreicella sp. SE45] gi|260419414|gb|EEX12667.1| OmpA domain protein [Citreicella sp. SE45] Length = 174 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDR 291 + F S P+ L + L +++ ++ I GH D N L R Sbjct: 64 DRVFFAVDQSTLSPQAQATLDAQAQWLMTNSDYLAVIEGHADEQ---GTREYNIALGARR 120 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR-IDIL 337 A + + L+ G++ +R+ IS G A + S NRR + ++ Sbjct: 121 ANATMEYLVSKGIASNRLRFISYGKERPVEVCAEEACYSKNRRAVTVI 168 >gi|149188836|ref|ZP_01867126.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1] gi|148837256|gb|EDL54203.1| Conserved hypothetical outer membrane protein [Vibrio shilonii AK1] Length = 221 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPF 277 E T G L++ F P L + + LA + +++ GHTD + Sbjct: 100 EPTDKGYLVA------RVHFAFDKYNLTPLAHKTLTGVAKQLAANNFEVTVEGHTD---W 150 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 N L + RA + L +GV ++ + + F ++ + NRR D Sbjct: 151 VGSDEYNQALGMRRATATANELASNGVRKENTTLKT-FGESEPLASNKTADGRSQNRRSD 209 Query: 336 ILV 338 + + Sbjct: 210 VYI 212 >gi|27366370|ref|NP_761898.1| sodium-type flagellar protein motY [Vibrio vulnificus CMCP6] gi|27362571|gb|AAO11425.1| Sodium-type flagellar protein motY precursor [Vibrio vulnificus CMCP6] Length = 293 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++++ + L +I E + +++++ + + +TD++ +++++ LS RA S Sbjct: 187 YERNGDKLTKASQKRLSQIAEYVRYNSDIDLVLVSTYTDSTDGTSVSQN---LSERRAES 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G++EDRI ++ G+ R + NRR+ I + Sbjct: 244 LRDYFKALGLTEDRI-QVQGYGKRRPIADNATPIGKDKNRRVVISL 288 >gi|585614|sp|P38368|OMP52_HAEIN RecName: Full=Outer membrane protein P5; Short=OMP P5; Flags: Precursor gi|388301|gb|AAA03346.1| outer membrane protein P5 [Haemophilus influenzae] gi|301169904|emb|CBW29508.1| outer membrane protein A (3a;II*;G;d) [Haemophilus influenzae 10810] Length = 353 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 240 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 297 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 349 >gi|160894083|ref|ZP_02074861.1| hypothetical protein CLOL250_01637 [Clostridium sp. L2-50] gi|156864116|gb|EDO57547.1| hypothetical protein CLOL250_01637 [Clostridium sp. L2-50] Length = 251 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 26/201 (12%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 L +S +S E + + +++ L +++ L +A S ++ L + + Sbjct: 38 LMQSKSQYESKQAELDKQKEIIKEQEQLLKDQQEELDRIAGIRSDLVAALRDEFADSSLN 97 Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI----GEVL-----AHSTEVIS 267 + I+ + +FD + S E L++ +VL I Sbjct: 98 VKVDEKTGAITF---DASVLFDVADSDLKEEGKTFLKEFLPKYCKVLLDEKYRDYVSEII 154 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGVSED-------RISKISGFAHH 318 I GHTD + N LS RA+S + +G+ + +G ++ Sbjct: 155 IEGHTDTN---GSYIYNLELSQHRAFSVAKYCLTESNGIISSTDVELLRSVLTANGKSYS 211 Query: 319 RLKIASDPM--NSANRRIDIL 337 D A+RR++IL Sbjct: 212 NPIYKEDGAVDLEASRRVEIL 232 >gi|153831565|ref|ZP_01984232.1| OmpA family protein [Vibrio harveyi HY01] gi|148872075|gb|EDL70892.1| OmpA family protein [Vibrio harveyi HY01] Length = 297 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS- 310 L + + I+I GHTD ++ N LSL RA S L K + D Sbjct: 77 LNAFVHEIEGLSGRITIVGHTD---YKGSLEYNEALSLRRAQSVESFL-KEKLDPDHYDW 132 Query: 311 KISGFAHHRLKI--ASDPMNSANRR 333 ++ F + +D + NRR Sbjct: 133 EVKYFGETQPLALGKTDEDRAENRR 157 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD S PE + L + L I + GHTD +++ N +L+ RA Sbjct: 188 TPHFDFDKSQLKPEDLAKLDSFTDKLQGLQGSILVAGHTD--QIGSLSY-NEKLAQRRAS 244 Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKI--ASDPMNSANRR 333 + L K+ + + ++ F + I S N+ NRR Sbjct: 245 EVVKYL-KTKIDPSQFLWEVKSFGELQPAIDERSKEANALNRR 286 >gi|145637084|ref|ZP_01792747.1| Outer membrane protein P5 [Haemophilus influenzae PittHH] gi|145269738|gb|EDK09678.1| Outer membrane protein P5 [Haemophilus influenzae PittHH] Length = 358 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 245 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 302 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 354 >gi|295395643|ref|ZP_06805835.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971459|gb|EFG47342.1| OmpA family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 563 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 23/114 (20%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +FD S + VL + + L + + + + GHTDA + N +LS DRA Sbjct: 275 LFDFDKSEINDKGHKVLGNVAKTLNQQAAGQTVKVVGHTDA---KGDENYNKKLSEDRAK 331 Query: 294 SAYQVLMKSGVSEDRISKI----SGFAHHRLKIAS--------DPMNSANRRID 335 + + L +++ + G + + + + NRR+ Sbjct: 332 AVQKELQ------PQLNNVKLETEGRGETQPIAKNFDDKGNDLEANQAKNRRVS 379 >gi|108755187|emb|CAK32579.1| outer membrane protein [uncultured organism] Length = 178 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F+ L+K L I++ GH D R N L R Sbjct: 68 DRIFFEFDKYNLKAGARGTLEKQAAWLKKWPAVTITVEGHCDE---RGTREYNLALGERR 124 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333 A S L+ GV+ RI IS + + S+ + NRR Sbjct: 125 ANSVKDYLVALGVNPSRIKTISYGKERPVALGSNESAWAQNRR 167 >gi|264677754|ref|YP_003277660.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|299529322|ref|ZP_07042761.1| OmpA/MotB [Comamonas testosteroni S44] gi|262208266|gb|ACY32364.1| OmpA/MotB [Comamonas testosteroni CNB-2] gi|298722700|gb|EFI63618.1| OmpA/MotB [Comamonas testosteroni S44] Length = 175 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + ++ + + + + + GHTD R N L RA + Sbjct: 74 FDFDSYSVKADAQPQIEAHAKFIKANPAAKVQLEGHTDE---RGGREYNLALGQKRAEAV 130 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + L GV++ ++ +S + + S+ + NRR++I Sbjct: 131 RRSLGLLGVNDAQVEAVS-YGKEKPAAEGHSEDAYAQNRRVEI 172 >gi|268590120|ref|ZP_06124341.1| outer membrane protein P5 [Providencia rettgeri DSM 1131] gi|291314389|gb|EFE54842.1| outer membrane protein P5 [Providencia rettgeri DSM 1131] Length = 363 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 R+ +F+ + + PE L ++ L+ + + G TD N LS Sbjct: 235 RSDVLFNFNKASLKPEGQQALNELYNELSSIDPTQGRVLVVGFTDRI---GSQNYNLPLS 291 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 RA S L+ GV I+ G + N + +RR++I Sbjct: 292 QKRAQSVVDYLVSKGVPASAIAA-EGRGKEDPVTGNKCDNVKGRAALIECLAPDRRVEIE 350 Query: 338 VE 339 ++ Sbjct: 351 IQ 352 >gi|153876506|ref|ZP_02003792.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152067030|gb|EDN66208.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 240 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 37/203 (18%) Query: 162 DLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTR 221 D+++S N+ E+ ++ R + Q+L ++ S L AD + + + Sbjct: 34 DVQRSKNQIEHQKNAMAEIVEVAEHSRLRLHQELLQEFISDLKRWNADILEDNTVRFNSP 93 Query: 222 TGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVI---SIRGHTD- 273 +F + S+ P+ +L +L H E I I GHT Sbjct: 94 Q------------VLFHQGKSMLQPQFKNILDSFFPRYLAILLHYQEDIEAIRIEGHTSS 141 Query: 274 ----ASPFRNIARDNWRLSLDRAYSAYQVL-MKSGVSED------RISKISGFAHHRLKI 322 A +N LS RA + + + + + E+ ++ + +G + + Sbjct: 142 DWLNADDIATRYLNNVELSQQRALATLEYCYLLASLDENLRKWLPQVLRANGLSFAKPIF 201 Query: 323 ASDPMNSAN----RRIDILVEDR 341 +D S N RR++ V + Sbjct: 202 NAD--GSENAEQSRRVEFKVVTK 222 >gi|144898283|emb|CAM75147.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Magnetospirillum gryphiswaldense MSR-1] Length = 157 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + +V+ + V ++ +++ G TD N LS RA Sbjct: 52 FDTNKTDIDSRGRMVVNSVAHVATNNGLTRVTVIGKTDRV---GSTAGNVALSQRRADQV 108 Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDILV 338 L+ +GV DRI + +G A + A+D NR +D+ V Sbjct: 109 RDALIAAGVPADRIDTSWTGEARQAVSTANDAEEQRNRVVDVTV 152 >gi|330953391|gb|EGH53651.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 447 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447 >gi|193076753|gb|ABO11465.2| putative antigen [Acinetobacter baumannii ATCC 17978] Length = 259 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%) Query: 228 IIDQRNTPMF--DKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283 I D+ + +F D+ + + E + KI E + S I + G TD P + Sbjct: 141 IADRIASVLFAFDRFDASAIEEGTNSVVKIAEQIKKSPTITPIIVSGFTD--PLGKFSY- 197 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK---IASDPM-----NSANRRID 335 N LS RA + ++L++ GV RI +I + + +++ + NRR++ Sbjct: 198 NQELSSKRANTVAKLLVQQGVDASRI-QIQANSQTDIYKQCSSNNSSQLIQCLAPNRRVN 256 Query: 336 I 336 I Sbjct: 257 I 257 >gi|83815059|ref|YP_446342.1| OmpA domain-containing protein [Salinibacter ruber DSM 13855] gi|83756453|gb|ABC44566.1| OmpA domain protein, putative [Salinibacter ruber DSM 13855] Length = 208 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 6/69 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEV-ISIRGHTDASPF----RNIARDNWRLSLD 290 F S+ L + + I+G+TD P ++ NW LS Sbjct: 95 FPSGSAWIPDRGRRRLDEHAATIKDEYPNAGFRIQGYTDPVPIGPSLQDTYPSNWYLSAQ 154 Query: 291 RAYSAYQVL 299 RA + L Sbjct: 155 RAAAVAHYL 163 >gi|329943316|ref|ZP_08292090.1| ompA family protein [Chlamydophila psittaci Cal10] gi|332287892|ref|YP_004422793.1| putative peptidoglycan-associated protein [Chlamydophila psittaci 6BC] gi|313848464|emb|CBY17468.1| putative peptidoglycan-associated protein (periplasmic) [Chlamydophila psittaci RD1] gi|325507092|gb|ADZ18730.1| putative peptidoglycan-associated protein [Chlamydophila psittaci 6BC] gi|328814863|gb|EGF84853.1| ompA family protein [Chlamydophila psittaci Cal10] gi|328915156|gb|AEB55989.1| outer membrane protein, OmpA family [Chlamydophila psittaci 6BC] Length = 191 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + + S ++ + I GHTD R A N L RA + Sbjct: 87 FATDSYTIKGEENLAILSSLVRQMQKSPKMTLYIEGHTDE---RGAASYNLALGARRANA 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 Q L+K G+S DR+ +S + + + + NRR + + R Sbjct: 144 VKQHLIKQGISADRLFTVSYGKEQPINLGHNELAWQQNRRTEFKIHAR 191 >gi|257487833|ref|ZP_05641874.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008545|gb|EGH88601.1| OmpA family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 447 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSAKLDNKAQQDLKRVAEYLKTSNQLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|189500639|ref|YP_001960109.1| peptidoglycan-associated lipoprotein [Chlorobium phaeobacteroides BS1] gi|189496080|gb|ACE04628.1| peptidoglycan-associated lipoprotein [Chlorobium phaeobacteroides BS1] Length = 158 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ P + L+ E L T I GH D R + N L R Sbjct: 53 KDVFFQYDSAELEPVAVSQLKNNAEWLNQNRTISAMIEGHCDE---RGTSEYNMALGEKR 109 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333 A + L+++GV+ R+ +S F R + + NRR Sbjct: 110 AETTKSFLVRAGVAASRLETVS-FGEERPFDSGHTEAAWSKNRR 152 >gi|87198413|ref|YP_495670.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444] gi|87134094|gb|ABD24836.1| OmpA/MotB [Novosphingobium aromaticivorans DSM 12444] Length = 174 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 + FD S L + LA V ++I GH D R N L R Sbjct: 68 DRVFFDFDSYGLDDTDRATLTRQASWLAQYPNVNVTIEGHADE---RGTRDYNLALGERR 124 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338 A +A L GV+ R+S +S + SD + + NRR + +++ Sbjct: 125 ANAAKNFLASLGVATTRMSVVSYGKERPEALGSDEQSWAQNRRAVTMVI 173 >gi|71083303|ref|YP_266022.1| OmpA family protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062416|gb|AAZ21419.1| OmpA family [Candidatus Pelagibacter ubique HTCC1062] Length = 159 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 + F + ++ + L+K L +++ + + GH D R N L Sbjct: 52 PDRVFFATNETVLTTASRETLRKQAAWLRKNSDINVVLEGHADE---RGTREYNLALGER 108 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333 RA SA LM G+S +RIS +S + S+P+ S NRR Sbjct: 109 RANSAKDYLMTYGISSERISVLSYGKERPVDSGSNPLAWSKNRR 152 >gi|297748730|gb|ADI51276.1| Peptidoglycan-associated lipoprotein [Chlamydia trachomatis D-EC] gi|297749610|gb|ADI52288.1| Peptidoglycan-associated lipoprotein [Chlamydia trachomatis D-LC] Length = 202 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + L S + + I GHTD R A N L RA + Sbjct: 98 FATDSYSIKGEDNLTILASLVRHLHKSPKATLYIEGHTDE---RGAAAYNLALGARRANA 154 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 Q L+K G++ DR+ IS G H ++ NRR + + R Sbjct: 155 VKQYLIKQGIAADRLFTISYGKEHPVHPGHNELAWQQNRRTEFKIHAR 202 >gi|15605330|ref|NP_220116.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis D/UW-3/CX] gi|76789338|ref|YP_328424.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis A/HAR-13] gi|166154814|ref|YP_001654932.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 434/Bu] gi|166155689|ref|YP_001653944.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237803028|ref|YP_002888222.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis B/Jali20/OT] gi|237804949|ref|YP_002889103.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311421|ref|ZP_05353991.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 6276] gi|255317722|ref|ZP_05358968.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 6276s] gi|255348981|ref|ZP_05380988.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 70] gi|255503520|ref|ZP_05381910.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 70s] gi|255507198|ref|ZP_05382837.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis D(s)2923] gi|301336092|ref|ZP_07224336.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis L2tet1] gi|3329044|gb|AAC68202.1| Peptidoglycan-Associated Lipoprotein [Chlamydia trachomatis D/UW-3/CX] gi|76167868|gb|AAX50876.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis A/HAR-13] gi|165930802|emb|CAP04300.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis 434/Bu] gi|165931677|emb|CAP07254.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273249|emb|CAX10164.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274262|emb|CAX11057.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis B/Jali20/OT] gi|289525642|emb|CBJ15123.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis Sweden2] gi|296435206|gb|ADH17384.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis E/150] gi|296436135|gb|ADH18309.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis G/9768] gi|296437063|gb|ADH19233.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis G/11222] gi|296437995|gb|ADH20156.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis G/11074] gi|296438925|gb|ADH21078.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis E/11023] gi|297140497|gb|ADH97255.1| peptidoglycan-associated lipoprotein [Chlamydia trachomatis G/9301] Length = 188 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + L S + + I GHTD R A N L RA + Sbjct: 84 FATDSYSIKGEDNLTILASLVRHLHKSPKATLYIEGHTDE---RGAAAYNLALGARRANA 140 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDR 341 Q L+K G++ DR+ IS G H ++ NRR + + R Sbjct: 141 VKQYLIKQGIAADRLFTISYGKEHPVHPGHNELAWQQNRRTEFKIHAR 188 >gi|15835503|ref|NP_297262.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Nigg] gi|7190917|gb|AAF39684.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Nigg] Length = 202 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + L S + + I GHTD R A N L RA + Sbjct: 98 FATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 154 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 Q L+K G++ DR+ IS H + + + NRR + + R Sbjct: 155 VKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 202 >gi|49083180|gb|AAT50966.1| PA1048 [synthetic construct] Length = 294 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +P T L K+ ++ I + GHTD++ N +LS +RA S + S Sbjct: 187 LMPITRNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 G+ D++ ++ G + AS + NRR+++L R Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 283 >gi|329755860|gb|AEC04327.1| outer membrane protein A [Pasteurella multocida] gi|329755868|gb|AEC04331.1| outer membrane protein A [Pasteurella multocida] gi|329755870|gb|AEC04332.1| outer membrane protein A [Pasteurella multocida] gi|329755872|gb|AEC04333.1| outer membrane protein A [Pasteurella multocida] Length = 348 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 292 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 348 >gi|329755856|gb|AEC04325.1| outer membrane protein A [Pasteurella multocida] Length = 354 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 241 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 297 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 298 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 354 >gi|329755848|gb|AEC04321.1| outer membrane protein A [Pasteurella multocida] Length = 358 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358 >gi|329755832|gb|AEC04313.1| outer membrane protein A [Pasteurella multocida] gi|329755834|gb|AEC04314.1| outer membrane protein A [Pasteurella multocida] gi|329755836|gb|AEC04315.1| outer membrane protein A [Pasteurella multocida] gi|329755838|gb|AEC04316.1| outer membrane protein A [Pasteurella multocida] gi|329755844|gb|AEC04319.1| outer membrane protein A [Pasteurella multocida] gi|329755850|gb|AEC04322.1| outer membrane protein A [Pasteurella multocida] Length = 358 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358 >gi|329755830|gb|AEC04312.1| outer membrane protein A [Pasteurella multocida] Length = 358 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358 >gi|289661910|ref|ZP_06483491.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667001|ref|ZP_06488076.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 172 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L I+++G+TD R N L R + Sbjct: 69 FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNTDE---RGSREYNMGLGERRGNAV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S +++ +S + R + S NRR++I+ Sbjct: 126 SSSLQAAGGSASQLTVVS-YGEERPVCTESGESCWSQNRRVEIV 168 >gi|260767963|ref|ZP_05876897.1| putative sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP 102972] gi|260615993|gb|EEX41178.1| putative sodium-type flagellar protein MotY precursor [Vibrio furnissii CIP 102972] Length = 227 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 13/118 (11%) Query: 226 ISIIDQRNTPM-FDKS----SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI 280 I+ + R+T + F S+ ++ + + I GHTD R Sbjct: 93 ITFTEARDTSLYFASGQQSLSAAQQRTLRDLISYVA--RDKRVTHLLIDGHTDNVGSRLA 150 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK--IASDPMNSANRRIDI 336 N +S RA VL GV+ D+I +I A++ + NRR+ I Sbjct: 151 ---NLSVSRSRAEQVAAVLETLGVAADKI-QIRAHGSRYPVASNATESGRAQNRRVVI 204 >gi|222111846|ref|YP_002554110.1| ompa/motb domain-containing protein [Acidovorax ebreus TPSY] gi|221731290|gb|ACM34110.1| OmpA/MotB domain protein [Acidovorax ebreus TPSY] Length = 233 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 19/206 (9%) Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 + SL + + + + +P ++ ++ A L A+ Sbjct: 32 RSRQSLAATPTHLQPADAAPLTQLQPHVTHGGLVPRETETRLQAAAGPATLLRAAEVPPQ 91 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 L A ++ + + T ISI D +FD + + L K E+L Sbjct: 92 RLEQTHA--LLVELQAQPTPEQ-AISI-DLPADVLFDFDKAELRADAARSLDKAAELLKS 147 Query: 262 STE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I + GHTD + N LS RA + L R G + Sbjct: 148 YPQAPIDVVGHTDG---KGGDTYNDALSQRRAAAVAAALQS---RTGRPIATRGMGKRQP 201 Query: 321 KIAS-------DP-MNSANRRIDILV 338 + DP NRR+ I++ Sbjct: 202 VAPNTTPDGRDDPDGRQRNRRVQIVI 227 >gi|62548381|gb|AAX86828.1| outer membrane protein [Pasteurella multocida] Length = 358 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 358 >gi|49182350|gb|AAT57677.1| OmpA [Pasteurella multocida] Length = 351 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 238 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 294 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 295 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 351 >gi|49182356|gb|AAT57680.1| OmpA [Pasteurella multocida] Length = 353 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 240 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 297 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 353 >gi|58422905|gb|AAW73252.1| OmpA [Salmonella sp. CDC 156-87] Length = 226 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S PE L ++ L++ + + G TD + A N LS Sbjct: 118 KSDVLFNFNKSTLKPEGQQALDQLYNQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQGLS 174 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 RA S L+ G+ D+IS G + Sbjct: 175 EKRAQSVVDYLISKGIPSDKISA-RGMGESNPVTGN 209 >gi|77464239|ref|YP_353743.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1] gi|126463081|ref|YP_001044195.1| OmpA domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221640123|ref|YP_002526385.1| OmpA domain-containing protein [Rhodobacter sphaeroides KD131] gi|332559128|ref|ZP_08413450.1| OmpA domain protein precursor [Rhodobacter sphaeroides WS8N] gi|77388657|gb|ABA79842.1| OmpA/MotB family protein [Rhodobacter sphaeroides 2.4.1] gi|126104745|gb|ABN77423.1| OmpA domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221160904|gb|ACM01884.1| OmpA domain protein precursor [Rhodobacter sphaeroides KD131] gi|332276840|gb|EGJ22155.1| OmpA domain protein precursor [Rhodobacter sphaeroides WS8N] Length = 182 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F S L + L +++ I I GH D N L R Sbjct: 72 DRVFFTVDQSTLNDAARATLDTQSQWLMSNADYAIIIEGHADEQ---GTREYNLALGARR 128 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A + L+ G++ R+ +S G +++ S NRR Sbjct: 129 ASAVQDYLISKGIAPSRMKTVSYGKERPVEVCSTEACYSKNRR 171 >gi|15602651|ref|NP_245723.1| hypothetical protein PM0786 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721089|gb|AAK02870.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 353 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 240 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 297 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 353 >gi|332288152|ref|YP_004419004.1| outer membrane protein A [Gallibacterium anatis UMN179] gi|330431048|gb|AEC16107.1| outer membrane protein A [Gallibacterium anatis UMN179] Length = 361 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 17/120 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F + PE L + + + + + G+TD + N +LS +RA Sbjct: 240 LFAFGKANLKPEAAQSLDNLQQEITKVGSLSSVEVAGYTD--RIGSDKY-NQKLSQERAN 296 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDRQ 342 + L+ +S D I + G+ + D + +RR+++ V +Q Sbjct: 297 TVANYLVSKSISPDVIKAV-GYGEANPVTGNTCDAVKGRKALIACLAPDRRVEVSVSGQQ 355 >gi|255014570|ref|ZP_05286696.1| hypothetical protein B2_11729 [Bacteroides sp. 2_1_7] gi|293373684|ref|ZP_06620031.1| chemotaxis protein MotB family protein [Bacteroides ovatus SD CMC 3f] gi|292631339|gb|EFF49970.1| chemotaxis protein MotB family protein [Bacteroides ovatus SD CMC 3f] Length = 231 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 23/215 (10%) Query: 144 KNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTL 203 K + ++ + DL S+ L + ++ + + +I + L Sbjct: 4 KRTEYESKDENAFALSTGDLMASLLFIFILLLMGALLQVQEKAEQDEEIVKRYDQIKTQL 63 Query: 204 SGLVADNIVKGVLF--ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE---- 257 + + T + + I Q + +FD+ S+ P+ +L Sbjct: 64 YIDLQQEFKDDLAVWRATIDSTLCIRF--QEPSMLFDEGQSLLKPKFKNILDDFFPRYIA 121 Query: 258 VLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV---LMKSGVSE--D 307 VL+ I I GHT+++ N LS DR + Q LM + E Sbjct: 122 VLSRDEYRDNIEEIRIEGHTNSN---GGYYSNMELSQDRTRAVLQYCFSLMSDDLEEWLK 178 Query: 308 RISKISGFAHHRLKIASDPMNSAN--RRIDILVED 340 + +G + L + + + RR++ V Sbjct: 179 GLVTANGLSSSHLILKMNGEEDKDLSRRVEFRVRT 213 >gi|332664693|ref|YP_004447481.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333507|gb|AEE50608.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 662 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 11/105 (10%) Query: 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 +I + + +L + T + + HTD+ R N +LS+ RA +A + L++ Sbjct: 547 AIRTTDARDLEALTRLMLKYPTMEVELGAHTDS---RGTTEYNQQLSVRRAEAAKEFLVR 603 Query: 302 SGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILVE 339 GV+ +RI + +GF +++ ++ + NRR ++ V Sbjct: 604 KGVAANRI-RTTGFGETQIRNHCKEGIECAEKEHQFNRRTEVKVL 647 >gi|261251019|ref|ZP_05943593.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] gi|260937892|gb|EEX93880.1| outer membrane protein A precursor [Vibrio orientalis CIP 102891] Length = 305 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 14/141 (9%) Query: 196 AKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 + I LV +++ + I I++ FD S + + ++ Sbjct: 28 KENIDKFGDPLVEKFLIRECIVP--ERDIRIAMASH-----FDFDKSELKEQDKQSIDRL 80 Query: 256 GEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS-KISG 314 + I+I GHTD ++ N +LSL RA + + + R ++ Sbjct: 81 ISSIRKLHGQIAIVGHTD---YQGSDDYNVKLSLRRAEAVKAYMQTQ-LDASRYDWEVKY 136 Query: 315 FAHHRLKI--ASDPMNSANRR 333 + + + S N+ NRR Sbjct: 137 YGESKPLVEGQSKQANAENRR 157 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + P L + L + I GHTD ++ N RL+ RA S Sbjct: 191 FGFDEAKLKPIDKTSLDEFANQLNGLNGRVLIAGHTD---YQGSISYNERLAEQRAESVL 247 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRR 333 Q L + ++ F + N+ NRR Sbjct: 248 QYLQTKLDPNQFVWEVKSFGELNPVTQEQDLDANALNRR 286 >gi|259415649|ref|ZP_05739570.1| OmpA/MotB [Silicibacter sp. TrichCH4B] gi|259348879|gb|EEW60641.1| OmpA/MotB [Silicibacter sp. TrichCH4B] Length = 136 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 8/103 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S LQ+ T + GHTD+ R N LS RA + Sbjct: 35 FFATDGSTVNAAGRKRLQEWFRNAMPGTRSFVVAGHTDS---RASDEYNMALSQRRADAV 91 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 Q+ G RI + + ++ + + NRR++I Sbjct: 92 AQIGRSVG---ARIKDVRAYGERSPRVPNRGAANLAQNRRVEI 131 >gi|187924986|ref|YP_001896628.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] gi|187716180|gb|ACD17404.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 215 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD +I P L + + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKAILKPAGKEKLDDLASKIGALNLEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ G+ +RI G N N RR+++ V Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|103487471|ref|YP_617032.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] gi|98977548|gb|ABF53699.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] Length = 373 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S PE L + I + GH D AR N LS R + Sbjct: 266 FDWDQSNITPEAASTLDNAISAYNRGCTGTQIMLAGHADR---SGSARYNVGLSERRNDA 322 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 L G+S+ IS F R +A+ N NRR++I Sbjct: 323 VRSYLTARGISDGSISA-QAFGETRPAVATADGVRNDQNRRVEI 365 >gi|325102935|ref|YP_004272589.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] gi|324971783|gb|ADY50767.1| OmpA/MotB domain protein [Pedobacter saltans DSM 12145] Length = 668 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 18/192 (9%) Query: 157 LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL 216 + KS EKS+ +E+ +++ + R + L K+ + + ++ + V Sbjct: 467 VNKSKGEEKSVLSKEDGTFSFDLEKETDYVLRGDSDKFLLKQEGQLSTKGIKESTIFNVR 526 Query: 217 FETT--RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 FE L+ + N +D + L K+ + V I +R HTD Sbjct: 527 FEVEKAEDAYLVKL----NNIYYDFDKYTIRKDAEPELNKVLAFMKKMPYVNIELRAHTD 582 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDP 326 + R A N LS +RA SA L+ G R+ GF +L + Sbjct: 583 S---RGKASYNMLLSENRANSAKLFLLNGGADGSRLLA-KGFGETQLLNHCKDGVKCTKE 638 Query: 327 MNSANRRIDILV 338 + NRR + V Sbjct: 639 EHQLNRRTEFKV 650 >gi|289625126|ref|ZP_06458080.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648705|ref|ZP_06480048.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867997|gb|EGH02706.1| OmpA family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 447 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSAKLDNKAQQDLKRVAEYLKTSNQLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447 >gi|73667180|ref|YP_303196.1| OmpA/MotB domain-containing protein [Ehrlichia canis str. Jake] gi|72394321|gb|AAZ68598.1| OmpA/MotB domain [Ehrlichia canis str. Jake] Length = 162 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + +L+K+ + T I I GHTD R N L RA + Sbjct: 46 FDFGKATIGDSDKAILEKVIQKAQKDTNTNIVIVGHTDT---RGTDEYNLELGEQRANAV 102 Query: 296 YQVLMKSGVS-EDRIS-KISGFAHHRLKI-ASDPMNS-----ANRRIDILVED 340 +++ S E+RI+ + G + + + +S+P + NRR+ I + D Sbjct: 103 KDFIIEHDKSLENRITVQSKGKSEPAVLVYSSNPEEAEHAHAKNRRVVITLTD 155 >gi|170698906|ref|ZP_02889966.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] gi|170136159|gb|EDT04427.1| OmpA/MotB domain protein [Burkholderia ambifaria IOP40-10] Length = 85 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 255 IGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L+ + I GHTD S R LS RA + L+ + +++ + Sbjct: 1 MAAALSKLQNRTVDIIGHTDNSGNRTSHI---ALSQARADAVKGYLITKSIPPQQMT-TT 56 Query: 314 GFAHHRLKIASDP--MNSANRRID 335 G + +D + NRRID Sbjct: 57 GVGPDQPIAPNDTADGRARNRRID 80 >gi|332704881|ref|ZP_08424969.1| peptidoglycan-associated lipoprotein [Desulfovibrio africanus str. Walvis Bay] gi|332555030|gb|EGJ52074.1| peptidoglycan-associated lipoprotein [Desulfovibrio africanus str. Walvis Bay] Length = 198 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 36/204 (17%) Query: 135 SNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQD 194 + Q S + + D + D EE + ++ ++RLQ Sbjct: 24 AKKQVSSTPDQTSAAAQGEMTDGTPTDDEAARRAAEEEAYRRSELQDDQTGQTEQERLQA 83 Query: 195 LAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK 254 ++ ++ LV F S + VLQ+ Sbjct: 84 -EQQAKQNINELV----------------------------FFAYDSYELDSKAREVLQR 114 Query: 255 IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 + L + ++I+G D R N L RA +++ L+ GV+ +RI+ +S Sbjct: 115 KAQALKLMPDTRVTIKGFCDE---RGTEEYNLALGERRARASFDFLVLMGVNPNRINIVS 171 Query: 314 GFAHHRLKIASDPMN--SANRRID 335 + ++ + NRR + Sbjct: 172 -YGEDNPLDPANSEAAYAKNRRCE 194 >gi|53804447|ref|YP_113694.1| OmpA family protein [Methylococcus capsulatus str. Bath] gi|53758208|gb|AAU92499.1| OmpA family protein [Methylococcus capsulatus str. Bath] Length = 215 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS LPE + ++ LA V +++ GH D R N L RA S Sbjct: 112 FGYDSSEVLPEYVPIVNAHAAYLASHPNVTVTLEGHCDE---RGSPEYNIALGEQRARSI 168 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDIL 337 + G S+ ++ +I F + + NRR++I+ Sbjct: 169 ANTMRFQGASDGQM-QIVSFGEEKPADPGSGEAAWAKNRRVEIV 211 >gi|86153447|ref|ZP_01071651.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843173|gb|EAQ60384.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni HB93-13] Length = 317 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 54/322 (16%) Query: 33 WKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 W I YAD M L+ F+++ + K I+ N L E++ Sbjct: 12 W-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARL---------EES 61 Query: 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLT 148 E ++ I + + S L + ++ + + + N Q S+ ++L Sbjct: 62 KEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN------YKQLSKDLNSTLD 115 Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 K + ++++ L L ++ A ++ + L + + +S L + Sbjct: 116 NKD-------KQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGFIRENLSKELQSKLD 168 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG-----------E 257 +NI + E T + IS+ +FDK S + E L+KI + Sbjct: 169 NNIT---IDEKTGS---ISL---PAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPK 219 Query: 258 VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED--RISKISGF 315 + ++ I I GHTD+ N LS RAY + S ++ SG Sbjct: 220 IFSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKSNKLQKLLMASGR 275 Query: 316 AHHRLKIASDPMN-SANRRIDI 336 + + + +RRI+I Sbjct: 276 SFSDPVFVNGVEDKDKSRRIEI 297 >gi|270285686|ref|ZP_06195080.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Nigg] gi|270289694|ref|ZP_06195996.1| peptidoglycan associated lipoprotein, putative [Chlamydia muridarum Weiss] gi|301337081|ref|ZP_07225283.1| peptidoglycan-associated lipoprotein [Chlamydia muridarum MopnTet14] Length = 188 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + L S + + I GHTD R A N L RA + Sbjct: 84 FATDSYSIKGEDNLTILASLVRHLRKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 140 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 Q L+K G++ DR+ IS H + + + NRR + + R Sbjct: 141 VKQYLIKQGIASDRLFTISYGKEHPVHSGHNELAWQQNRRTEFKIHAR 188 >gi|315638943|ref|ZP_07894114.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21] gi|315480972|gb|EFU71605.1| flagellar motor protein MotB [Campylobacter upsaliensis JV21] Length = 244 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 4/186 (2%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F + Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISETNPAKVEALKTEFVKI-FDY 58 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T + QN + + ++ E + + ++ + K + EN I Sbjct: 59 TTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQETIRKLKAALDQSENQIALNLP 118 Query: 137 SQQSEHCKNSLTRDSEKGKD-LCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL 195 S+ E KNS S +D L + L S+ + + + A++ + + Sbjct: 119 SR-VEFAKNSAEIVSADVQDYLKRMAQLSLSLPPQAKIEIRGFTDNSDSALRSFELGYER 177 Query: 196 AKKISS 201 AK + + Sbjct: 178 AKAVMN 183 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 30/208 (14%) Query: 134 LSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE--KILAMKRKKR 191 +N + E K + + T+ + + P E K L + +++ Sbjct: 39 ETNPAKVEALKTEFVKIFDYTTTQAVKTESQNTEKHAGASRTPNDEVEALKRLTLSQQET 98 Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIV 250 ++ L + + +A N+ V F K+S+ + Sbjct: 99 IRKLKAALDQS-ENQIALNLPSRVE--------------------FAKNSAEIVSADVQD 137 Query: 251 VLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 L+++ ++ I IRG TD + A ++ L +RA + + GVS + Sbjct: 138 YLKRMAQLSLSLPPQAKIEIRGFTDN---SDSALRSFELGYERAKAVMNYFIDGGVSVGK 194 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDI 336 + I + + + P + AN R++I Sbjct: 195 L-SIKSYGFNEPLLNHAPSDLANNRVEI 221 >gi|298487201|ref|ZP_07005250.1| Phosphate-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158225|gb|EFH99296.1| Phosphate-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 408 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL---AHSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 307 FAQGSAKLDNKAQQDLKRVAEYLKTSNQLNQHVTLVGFGDAKSDPARAAL-----LSRLR 361 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 362 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNDIDDGRIKNRRVEVWVQ 408 >gi|312962647|ref|ZP_07777136.1| hypothetical protein PFWH6_4568 [Pseudomonas fluorescens WH6] gi|311283022|gb|EFQ61614.1| hypothetical protein PFWH6_4568 [Pseudomonas fluorescens WH6] Length = 437 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%) Query: 235 PMFDKSSSIPLP-------ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL 287 +F+ + + P E L+ + S SI G+ D P + N L Sbjct: 311 SLFESNGAEPTALGKRKINEFRRQLRAFAKTSGLSVVEASITGYADRQPLKAKGDTNLEL 370 Query: 288 SLDRAYSAYQVLMKSGVS---EDRISKISGFAHHRL-----KIASDPMN--SANRRIDIL 337 S RA S Q L V +++ G A R +D + S++RR++++ Sbjct: 371 SRRRALSVSQYLGSILVPLSEDNKSIVGRGVAQTRAECPAGLAPADMSSCLSSDRRVEVV 430 Query: 338 VE 339 VE Sbjct: 431 VE 432 >gi|295691255|ref|YP_003594948.1| OmpA/MotB domain-containing protein [Caulobacter segnis ATCC 21756] gi|295433158|gb|ADG12330.1| OmpA/MotB domain protein [Caulobacter segnis ATCC 21756] Length = 406 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE V+ + + I + GHTD + N +LS RA + Sbjct: 304 FPFDQSVLTPEAQSVVTEAAKYSNDGKATKIIVVGHTDT---SGSPKYNVKLSERRAKAV 360 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GVS+D + + +A+ NRR I + Sbjct: 361 ADALVSQGVSKD-VLGVDWKGESAPAVATGDGVKEPLNRRSTISI 404 >gi|260914077|ref|ZP_05920550.1| lipoprotein PlpD [Pasteurella dagmatis ATCC 43325] gi|260631710|gb|EEX49888.1| lipoprotein PlpD [Pasteurella dagmatis ATCC 43325] Length = 275 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 13/113 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + V+ + L S + + G TD A N LS R Sbjct: 138 GDFLFDFDKDALTAKGKEVVDSVATQLKSSGAKEVKVAGFTDRL---GSAAYNLDLSQRR 194 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336 A L++ GV+ + I+ + G A P NRR++I Sbjct: 195 ANRVKARLIEQGVNAN-INAVGYGKAQQVKACEEYPFGKQLKDCLRPNRRVEI 246 >gi|330971267|gb|EGH71333.1| OmpA/MotB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 447 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+K GV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKRGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|163745646|ref|ZP_02153006.1| OmpA domain protein [Oceanibulbus indolifex HEL-45] gi|161382464|gb|EDQ06873.1| OmpA domain protein [Oceanibulbus indolifex HEL-45] Length = 641 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 17/307 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSS 94 I +AD L+A TD D+ + ++ + + ++P Sbjct: 300 ISFADADITLLA-------APGTDSDSFDRVVGELENALPDVFALTAKLPKVEDPNAGPP 352 Query: 95 QNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE-NNIFYLSNSQQSEHCKNSLTRDSEK 153 + LS + + G + Y + + + ++ E Sbjct: 353 EFTATLSPEGQVQLRGRLTTEGLRDLADSYAKSHFGSSNVYTAARLDETLPADWATRVLT 412 Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G + S + + + +K L D + + + + Sbjct: 413 GLEAMASLANGSVTVTPDRLEVTGNTGKKEANTTVASLLADKLGESADYSIDITYQEKLD 472 Query: 214 GVLFETTRTGILISIID--QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 + T I + F+ ++ + + I EVL + + I+G Sbjct: 473 PIAGLPTPEECEAEIGEILTIGKITFEPGNATIDASALGTMDDIAEVLKRCGDIPLEIQG 532 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN 328 +TD+ N LS RA S L V G+ + + Sbjct: 533 YTDSQ---GRETMNLSLSQSRAESVLNELRARRVLTSSFLA-KGYGEENPIADNQTEEGR 588 Query: 329 SANRRID 335 ANRRI+ Sbjct: 589 EANRRIE 595 >gi|124002746|ref|ZP_01687598.1| OmpA family protein [Microscilla marina ATCC 23134] gi|123991974|gb|EAY31361.1| OmpA family protein [Microscilla marina ATCC 23134] Length = 775 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 7/108 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSL 289 F S L K+ L + + + G++D + N LS Sbjct: 666 SDFRIYFKFGSRKIEKYCHPSLDKLVNFLETNPKVKVELAGYSDEL---GSKKGNVGLSE 722 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRID 335 DRA + L++ G+ R++ G+ K + + NRR++ Sbjct: 723 DRAKAVVDYLIEKGIDFSRLT-YKGYGKVSPKHPNKTKHGRILNRRVE 769 >gi|189466361|ref|ZP_03015146.1| hypothetical protein BACINT_02736 [Bacteroides intestinalis DSM 17393] gi|189434625|gb|EDV03610.1| hypothetical protein BACINT_02736 [Bacteroides intestinalis DSM 17393] Length = 385 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 30/189 (15%) Query: 151 SEKGKDLCKSTDL-EKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 + GK K +D+ E +IN E N + L++ + K L ++ ++ + + Sbjct: 224 TFGGKKFAKVSDIDEDAINAEINRYRSELAQAQADLANCKNSLANMKPEVKEVIKEIQTA 283 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISI 268 F S+ V +Q ++L + + + Sbjct: 284 G---------------------PRAIFFKIGSARLDDYGKVNIQLAAKILKANPDKKYKV 322 Query: 269 RGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN 328 G+ D + A N +LS RA Y L+ GV +D++ + GF + + +N Sbjct: 323 AGYCDKA--TGSAAYNQKLSEKRAQVVYDALIAEGVDKDQLEFV-GFGGTENMFSKNYLN 379 Query: 329 SANRRIDIL 337 R+ IL Sbjct: 380 ----RVVIL 384 >gi|320156881|ref|YP_004189260.1| sodium-type flagellar protein motY [Vibrio vulnificus MO6-24/O] gi|319932193|gb|ADV87057.1| sodium-type flagellar protein motY precursor [Vibrio vulnificus MO6-24/O] Length = 254 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 ++++ + L +I E + +++++ + + +TD++ +++++ LS RA S Sbjct: 148 YERNGDKLTKASQKRLSQIAEYVRYNSDIDLVLVSTYTDSTDGTSVSQN---LSERRAES 204 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 G++EDRI ++ G+ R + NRR+ I + Sbjct: 205 LRDYFKALGLTEDRI-QVQGYGKRRPIADNATPIGKDKNRRVVISL 249 >gi|300716387|ref|YP_003741190.1| outer membrane protein [Erwinia billingiae Eb661] gi|299062223|emb|CAX59340.1| predicted outer membrane protein [Erwinia billingiae Eb661] Length = 294 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Query: 233 NTPMFDKSSS---IPLPETIVVLQK-IGEVLAHSTE--VISIRGHTDASPFRNIARDNWR 286 +F S P+ + K IG++ I + GHTD P N+ Sbjct: 175 GDVLFKFGKSMRHDMTPQGRQAVGKLIGQLHEDHVNLDSIEVIGHTD--PI-GKESSNYA 231 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 L RA + ++L+ G+ I S + +AS Sbjct: 232 LGARRASTVREMLIDGGLPAANIQATSA-GSSQPLVAS 268 >gi|269960160|ref|ZP_06174536.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835131|gb|EEZ89214.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 345 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + + ++ I + GHTD N +S RA Sbjct: 212 FQFGQKTLSRSQQSTIAALYSYISVDDRVTKILVDGHTDNV---GSQLANLTVSRQRAEQ 268 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 L++ GV + ++ +++ + NRR+ + Sbjct: 269 VADALVQQGVDRS-LIEVRAHGSRYPIASNNTQAGQAKNRRVTL 311 >gi|158318969|ref|YP_001511477.1| OmpA/MotB domain-containing protein [Frankia sp. EAN1pec] gi|158114374|gb|ABW16571.1| OmpA/MotB domain protein [Frankia sp. EAN1pec] Length = 200 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 12/178 (6%) Query: 167 INKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGV-LFETTRTGIL 225 E L S A + + + + + S L D + L R+G Sbjct: 22 AGAESPGALGATSAPPPPADVPAEEITRSVRPLDAAGSVLTIDPADSVLPLVTEERSGDR 81 Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNW 285 +++ + +F S + + + +T +++ GHTD+ N Sbjct: 82 VTVTISAD-VLFAFDSDDLTEAARTEIATLAGRVGPATRTVTVLGHTDSL---GTPAYNV 137 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH-----HRLKIASD-PMNSANRRIDI 336 LS RA + +L + S R+S G A R + D + NRR+ I Sbjct: 138 ILSQRRANAVADLLRPAVPSGTRVSATGRGGADPVAPNTRPDGSDDAAGRALNRRVQI 195 >gi|17545455|ref|NP_518857.1| peptidoglycan-associated lipoprotein precursor [Ralstonia solanacearum GMI1000] gi|17427747|emb|CAD14266.1| probable peptidoglycan-associated lipoprotein precursor [Ralstonia solanacearum GMI1000] Length = 172 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE +L + L +H+ + I+G+TD R + N L RA + Sbjct: 72 FDFDSYTVKPEYQGLLTQHARYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 128 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + L GV + ++ +S G + + + NRR DI+ Sbjct: 129 RRALSSLGVPDSQMESVSLGKEKPQASGHDEESWAQNRRSDIV 171 >gi|319783370|ref|YP_004142846.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169258|gb|ADV12796.1| OmpA/MotB domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 185 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ ++ I + L + I GHTDA + N LS R Sbjct: 76 FAFGSAAIANSQYDKIETIADALRRILRRDPGARVLIEGHTDAV---GSFQSNQALSEQR 132 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S + L++ + G+ L + + N NRR+ + Sbjct: 133 AASLKRTLVREFRVPGHALETVGYGEEFLLVQTQNENWQNRRVTL 177 >gi|124006521|ref|ZP_01691354.1| fibronectin-binding protein, putative [Microscilla marina ATCC 23134] gi|123987934|gb|EAY27614.1| fibronectin-binding protein, putative [Microscilla marina ATCC 23134] Length = 130 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 14/130 (10%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIR 269 ++ G F I +SI F S + + K+ + + + ISI Sbjct: 6 LINGFAFAQKHKAIRVSIY-------FGGGSYYIDAKQKRNIVKVIKQIKDLSKYQISIT 58 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 HTD + W LS R+ + + L++ + + ++ I F +D N Sbjct: 59 SHTDN--IGGKEYNEW-LSKMRSNAVLKQLIEHQIKKGKVL-IKDFGQDNPMYTNDSHNG 114 Query: 330 --ANRRIDIL 337 NRR+D+L Sbjct: 115 RIRNRRVDLL 124 >gi|332519342|ref|ZP_08395809.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045190|gb|EGI81383.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 311 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 13/254 (5%) Query: 93 SSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSE 152 ++ I + ++ + I +LE YL ++ E Sbjct: 62 DEKSSIRFTASDNFNFKVSNFAILEPVSDGLKTQLERVAAYLKDNPDKAIDVTGYYTAEE 121 Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K + + L ++ + + +S +KI L +S SG +I Sbjct: 122 KNESAFPNLGLARANAIKNYFVSIGVSTKKINTYGELN--DSLVPDNNSIFSGPAEYSIA 179 Query: 213 KGVLFETTRTGILISIIDQ--RNTPM--FDKSSS--IPLPETIVVLQKIGEVLAHSTE-V 265 +T+ L+++ + N+ M FD ++ + + KI + Sbjct: 180 TIDANDTSEQEALVALKEDIKANSLMLYFDTGAASINLTTQQREKVSKIVRYIDKVDNAK 239 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIAS 324 I I GHTD + N L +RA A L+++G++ ++I+ S G ++ Sbjct: 240 IRITGHTDNT---GNRETNIGLGKNRAEFAKSYLVQNGITSNKINTFSKGPDEPIADNST 296 Query: 325 DPMNSANRRIDILV 338 + + NRR+ + + Sbjct: 297 EAGKAKNRRLVVTI 310 >gi|313141840|ref|ZP_07804033.1| OmpA/MotB [Helicobacter canadensis MIT 98-5491] gi|313130871|gb|EFR48488.1| OmpA/MotB [Helicobacter canadensis MIT 98-5491] Length = 263 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 13/193 (6%) Query: 156 DLCKSTDLEKSINKEENYFLPPLSKE-------KILAMKRKKRLQDLAKKISSTLSGLVA 208 D K T+ E SI + + E + + + K+ S + Sbjct: 29 DAKKLTEAEGSIRGSLSVLSGGIKIEESRNRILQQADITTDPETAEQIIKVQSEILEFKE 88 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPMFDKS-SSIPLPETIVVLQKIGEVLAHSTE--V 265 D V G I+ +FD+ ++I + I+ L+++ +L + Sbjct: 89 DARVSLGPSVVEDDGKEGFILRFHGRLLFDEEKTAIENADEILFLKRLALILQKMPQTMH 148 Query: 266 ISIRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA-HHRLKI 322 + I G+ D + +D+ LS RA + ++L+++ V+ +I+ + G A + L Sbjct: 149 LDIIGYADNVEGKPNLKYQDSLGLSALRASNVAKILIENQVNPQKITSLGGGATNFLLPN 208 Query: 323 ASDPMNSANRRID 335 + + NRR++ Sbjct: 209 TNAENRAQNRRVE 221 >gi|221066746|ref|ZP_03542851.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] gi|220711769|gb|EED67137.1| OmpA/MotB domain protein [Comamonas testosteroni KF-1] Length = 170 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P +++ + + ++ I RGHTD+ R N L R+ S Sbjct: 69 FDFDSYTVRPSDRGIVESHAQWMRNNPRQALILRGHTDS---RGGTEYNLALGQKRSESV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 Q L G+ R+ IS + RL +S+ + NRR++ Sbjct: 126 LQSLQILGIDPSRVEAIS-YGKERLVDLGSSNDAHQLNRRVE 166 >gi|111219587|ref|YP_710381.1| lipoprotein [Frankia alni ACN14a] gi|111147119|emb|CAJ58764.1| hypothetical protein; putative lipoprotein [Frankia alni ACN14a] Length = 168 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ + + LA S I + G+TD+ F A + LS RA + Sbjct: 59 LFAFDSAELTATARRQIADVAGRLAGSAAPIRVDGYTDS--FGTPAYNV-ILSQRRASAV 115 Query: 296 YQVLMKSGVSEDRISKISGFA-------HHRLKIASDP-MNSANRRIDI 336 +L + + G + DP + NRR+ I Sbjct: 116 ADLLRPA-APAGFLVSARGHGSADPIAHDTLPDGSDDPAGRAINRRVTI 163 >gi|269962899|ref|ZP_06177239.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832453|gb|EEZ86572.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 305 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 252 LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS- 310 L + + I+I GHTD ++ N LSL RA S L K + D Sbjct: 77 LNAFVHEIEGLSGRITIVGHTD---YKGSLEYNEALSLRRAQSVESFL-KEKLDPDHYDW 132 Query: 311 KISGFAHHRLKI--ASDPMNSANRR 333 ++ F + +D + NRR Sbjct: 133 EVKYFGETQPLALGKTDEDRAENRR 157 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD S PE + L + L I + GHTD ++ N +L+ RA Sbjct: 188 TPHFDFDESELKPEDLAKLDSFTDKLQGLQGSILVAGHTD--QIGSLLY-NEKLAQRRAS 244 Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIA--SDPMNSANRR 333 + L K+ + + ++ F + I S N+ NRR Sbjct: 245 EVVKYL-KTKIDPSQFLWEVKSFGELQPVINERSKEANALNRR 286 >gi|154252570|ref|YP_001413394.1| peptidoglycan-associated lipoprotein [Parvibaculum lavamentivorans DS-1] gi|154156520|gb|ABS63737.1| Peptidoglycan-associated lipoprotein [Parvibaculum lavamentivorans DS-1] Length = 166 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + FD S E LQ+ + ++ GH D R N L R Sbjct: 56 DRVFFDTDQSSLSDEARATLQRQAAWMQLYPNLTFTVEGHADE---RGTREYNLALGGRR 112 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRL--KIASDPMNSANRR 333 A SA L+ GV R++ +S + R +++ + NRR Sbjct: 113 ANSAKDYLVSLGVDGGRLNTVS-YGKERPVCLDSNENCWAQNRR 155 >gi|53725459|ref|YP_102587.1| ompA family protein [Burkholderia mallei ATCC 23344] gi|52428882|gb|AAU49475.1| ompA family protein [Burkholderia mallei ATCC 23344] Length = 223 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 MF ++ + L ++ + L + +SI G+TD N +LS R Sbjct: 107 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 163 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337 A + L+ +GV D + G + D A NRR++++ Sbjct: 164 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLSPNRRVEVV 216 >gi|49182348|gb|AAT57676.1| OmpA [Pasteurella multocida] Length = 349 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 236 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 292 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 293 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 349 >gi|153812960|ref|ZP_01965628.1| hypothetical protein RUMOBE_03367 [Ruminococcus obeum ATCC 29174] gi|149830907|gb|EDM85997.1| hypothetical protein RUMOBE_03367 [Ruminococcus obeum ATCC 29174] Length = 335 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 109/341 (31%), Gaps = 69/341 (20%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 +++K ++ N W+ Y+D M ++ F+++ + Sbjct: 1 MRRKKKSENNGFN--VWR-SYSDMMAGVLLLFVLIMCVTLFQAQK--------------- 42 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 + E + +++ E T+ +D + + + Q Sbjct: 43 -----------SYNESLQERDEKIALQEEYTQELLDKQNALDKKDETLQN---------- 81 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLA 196 Q K + +E+ + L K N L ++ ++ ++ + Sbjct: 82 --QDAQLKTQDEKLAEQEQQLAALAAKLKEQESTLNAQQSALDEKTAQLKDQQAQIDQII 139 Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI- 255 + + L + + + +++ + MFD + L++I Sbjct: 140 GVKADVIEALKNEFSKNNINVDIDAQTGALTL---EASVMFDYDQAELTDAGKQALEQIL 196 Query: 256 ---GEVLAHSTE-----VISIRGHTDASPFRNIARD-NWRLSLDRAYSAYQVL--MKSGV 304 +VL I I G+TD + N +LS R+ + Q L ++ Sbjct: 197 PIYCKVLLQDDYMKYLAEIIIDGYTD----TDGDYSYNLQLSQQRSLAVAQYLLDIQGNF 252 Query: 305 SE-------DRISKISG--FAHHRLKIASDPMNSANRRIDI 336 + ++ ++G A+ L + A+RR+++ Sbjct: 253 LDTTQSQNLEKYLTVNGHSMANPVLDANGNVDKDASRRVEV 293 >gi|153831615|ref|ZP_01984282.1| OmpA family protein [Vibrio harveyi HY01] gi|148872125|gb|EDL70942.1| OmpA family protein [Vibrio harveyi HY01] Length = 301 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD SI L + + I+I GHTD F+ N +LS+ RA S Sbjct: 62 FDFDKSIIREADAASLDAFIRDIQGLSGRITIVGHTD---FKGSDEYNEKLSMRRAESVE 118 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 L + E ++ F + SD + NRR Sbjct: 119 AYLQQQLNPEQYDWEVKHFGESQPLALGKSDQARAENRR 157 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD S PE + L L I + GHTD +++ N +L+ RA Sbjct: 188 TPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTD--QVGSLSY-NEQLAERRAQ 244 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + L + ++ F + I + N+ NRR Sbjct: 245 TVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRR 286 >gi|253990221|ref|YP_003041577.1| outer membrane protein A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781671|emb|CAQ84834.1| outer membrane protein a (outer membrane protein ii*) [Photorhabdus asymbiotica] Length = 366 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 17/124 (13%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 R+ +F +SS E L ++ LAH + + G+TD N +LS Sbjct: 237 RSDVLFAFASSELKAEGKHTLDQLYTELAHIDPTQGKVLVLGYTDRI---GKDVYNQKLS 293 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN--------RRIDILV 338 RA S L+ G+ IS G S D + N RR++I + Sbjct: 294 QKRAQSVVDYLVTKGIPAGSISA-EGHGKANPVTGSTCDKVLKPNLISCLAPDRRVEIEI 352 Query: 339 EDRQ 342 + + Sbjct: 353 QGTK 356 >gi|239504183|ref|ZP_04663493.1| small protein A (tmRNA-binding) [Acinetobacter baumannii AB900] Length = 259 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%) Query: 228 IIDQRNTPMF--DKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283 I D+ + +F D+ + + E + KI E + S I + G TD P + Sbjct: 141 IADRIASVLFAFDRFDASAIEEGTNSVVKIAEQIKKSPTITPIIVSGFTD--PLGKFSY- 197 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--------SANRRID 335 N LS RA + ++L++ GV RI +I + + N + NRR++ Sbjct: 198 NQELSSKRANTVAKLLVQQGVDASRI-QIQANSQTDIYKQCSDNNSSQLIQCLAPNRRVN 256 Query: 336 I 336 I Sbjct: 257 I 257 >gi|126046392|gb|ABN73089.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVNPSQLKSKGVGSAEATVPASASNKERMKDRKV 356 >gi|114332455|ref|YP_748677.1| OmpA/MotB domain-containing protein [Nitrosomonas eutropha C91] gi|114309469|gb|ABI60712.1| OmpA/MotB domain protein [Nitrosomonas eutropha C91] Length = 231 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 22/118 (18%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 +FD ++ P + L L + I G+TD + A N +LS+ RA + Sbjct: 113 LFDFDKAVLKPAGMQALDDFSRNLEGVNYDLIIAVGYTD--RIGSEAY-NKKLSVRRAEA 169 Query: 295 AYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRIDILV 338 L+ G+ DRI ++G A L P RR++I V Sbjct: 170 VKNYLVSKGIGADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPD----RRVEIEV 223 >gi|296534740|ref|ZP_06897115.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957] gi|296264932|gb|EFH11182.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957] Length = 97 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 242 SIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + ++ + + + + T I + GH D + N RLS RA + L+ Sbjct: 1 ADLTDRARQIISEAAQNSSRTQTTRIEVAGHADR---SGSPQYNQRLSQRRADAVAAELV 57 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + GVS I+ + F R + + NRR++I++ Sbjct: 58 RQGVSRSAIT-VQAFGESRPLVPTADGVREPQNRRVEIVL 96 >gi|288957826|ref|YP_003448167.1| peptidoglycan-associated lipoprotein [Azospirillum sp. B510] gi|288910134|dbj|BAI71623.1| peptidoglycan-associated lipoprotein [Azospirillum sp. B510] Length = 155 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F PE L + + L + +++ GH D R N L R Sbjct: 50 DRVFFGLDRFDLSPEARATLDRQAKWLQTYGSVTVTVEGHADE---RGTREYNLALGERR 106 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333 A S L G+ R++ +S + S+ S NRR Sbjct: 107 ANSVKNYLAAKGIPASRVNVVSYGKERPAVVGSNEAAWSQNRR 149 >gi|254429094|ref|ZP_05042801.1| OmpA family protein [Alcanivorax sp. DG881] gi|196195263|gb|EDX90222.1| OmpA family protein [Alcanivorax sp. DG881] Length = 203 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 E + + VL +S++ TD + A N +L+ R Q L G+S Sbjct: 85 EARRLESNLA-VLKQYPTLQVSVQAFTDE---KGAASYNQKLAARRLDRVVQYLRDGGIS 140 Query: 306 EDRISKIS-GFAHHRLKIASDPMNSANRRIDILVEDRQ 342 RI +++ G L A++ NRR++++ D Q Sbjct: 141 NGRIKRVALGEELPILPDANNEQRVINRRVELMPLDAQ 178 >gi|305666576|ref|YP_003862863.1| OmpA/MotB family outer membrane protein [Maribacter sp. HTCC2170] gi|88708847|gb|EAR01082.1| outer membrane protein, OmpA/MotB family [Maribacter sp. HTCC2170] Length = 393 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 24/207 (11%) Query: 143 CKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISST 202 K LTR EK L + + E+ ++ + +E LA + K + A+ + Sbjct: 201 VKKGLTRKGEKKLALIQEMEKEQQRVQDSLANELRIKEEATLAQRLAKEKEK-ARLAAIE 259 Query: 203 LSGLVADNIVKGVLFETTRT-GILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + + A+N K L + + G++ F +SS + VL + +L Sbjct: 260 KARIDAENQRKQQLENSIKELGLV----------YFGFNSSYLNKNSKSVLGLLANLLKE 309 Query: 262 ST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL 320 + I HTD+ + W LS R LM G+SE+R+ F +L Sbjct: 310 KPSVHLKITSHTDSR--GASDYNKW-LSERRVERTKNYLMSIGISENRLVA-EAFGEEQL 365 Query: 321 KIA-------SDPMNSANRRIDILVED 340 S + NRR + V + Sbjct: 366 TNECGDGVRCSAEKHRKNRRSEFEVTE 392 >gi|319897366|ref|YP_004135562.1| outer membrane protein p5 precursor (omp p5) [Haemophilus influenzae F3031] gi|317432871|emb|CBY81237.1| outer membrane protein p5 precursor (omp p5) [Haemophilus influenzae F3031] Length = 348 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + + +LS RA S Sbjct: 235 FAFGKANLKPQAQATLDSIYGQMSQVKSAKVAVAGYTD--RIGSDEFNV-KLSQKRADSV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 292 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 344 >gi|238749729|ref|ZP_04611234.1| Outer membrane protein A [Yersinia rohdei ATCC 43380] gi|238712384|gb|EEQ04597.1| Outer membrane protein A [Yersinia rohdei ATCC 43380] Length = 358 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 230 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 286 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+I+ G + P + +RR++I Sbjct: 287 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 345 Query: 338 VE 339 V+ Sbjct: 346 VK 347 >gi|238022763|ref|ZP_04603189.1| hypothetical protein GCWU000324_02674 [Kingella oralis ATCC 51147] gi|237865966|gb|EEP67102.1| hypothetical protein GCWU000324_02674 [Kingella oralis ATCC 51147] Length = 230 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F PE I L + L+ S + + G+TD F + N LS RA + Sbjct: 89 LFGFDKYNLRPEAITTLNDLSAKLSQSNVQSVRVEGNTD---FMGSDKYNQALSERRANT 145 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L++ GV DRIS + G + Sbjct: 146 VANYLVQQGVPADRISAV-GLGETQ 169 >gi|319776591|ref|YP_004139079.1| outer membrane protein p5 precursor (omp p5) [Haemophilus influenzae F3047] gi|317451182|emb|CBY87415.1| outer membrane protein p5 precursor (omp p5) [Haemophilus influenzae F3047] Length = 348 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + + +LS RA S Sbjct: 235 FAFGKANLKPQAQATLDSIYGQMSQVKSAKVAVAGYTD--RIGSDEFNV-KLSQKRADSV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 292 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 344 >gi|307730629|ref|YP_003907853.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1003] gi|323526963|ref|YP_004229116.1| OmpA/MotB domain-containing protein [Burkholderia sp. CCGE1001] gi|307585164|gb|ADN58562.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1003] gi|323383965|gb|ADX56056.1| OmpA/MotB domain protein [Burkholderia sp. CCGE1001] Length = 215 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD +I P L + + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKAILKPAGKEKLDDLASKIQGLNLEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ G+ +RI G N N RR+++ V Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|261856832|ref|YP_003264115.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] gi|261837301|gb|ACX97068.1| OmpA/MotB domain protein [Halothiobacillus neapolitanus c2] Length = 373 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 87/287 (30%), Gaps = 29/287 (10%) Query: 67 QYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQR 126 YFN + + N + + K S+ ++G K Q Q Sbjct: 93 GYFNLGKFGYTAYTTPQGTLTGEIKLQGVNLDVVGLWPITDKFSLFGRVGVNYAKAQDQF 152 Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + ++N S N + + N + +++ Sbjct: 153 VGTGAVLVTNPSPSARDTNYKFGVGVQYALTESLDVRAEVERYRINDAVGNKGDIDLISA 212 Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 R A++ + + L A V+ + +S +FD + S+ P Sbjct: 213 GLVYRFGQKAREPALAPAPLAAIATPAPVVERHAPKKVTLS-----ADSLFDFNKSVVKP 267 Query: 247 ETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-V 304 L ++ L + I + GHTD + A N +LS RA + L+ SG + Sbjct: 268 AGKRALDQLARDLNGTDYDQIMVIGHTD--RIGSHAY-NLKLSTRRAEAVKDYLISSGQI 324 Query: 305 SEDRISK---------------ISGFAHHRLKIASDPMNSANRRIDI 336 +IS + A L P RR+++ Sbjct: 325 PAHKISAKGVDGADPVTKPGDCVGSKATPALIACLQPD----RRVEV 367 >gi|94502195|ref|ZP_01308691.1| OmpA family protein [Oceanobacter sp. RED65] gi|94425675|gb|EAT10687.1| OmpA family protein [Oceanobacter sp. RED65] Length = 143 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 9/107 (8%) Query: 237 FDKSSSIPLPETI-VVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD SS + +L K+ ++ +S+ G TD N L+ DRA + Sbjct: 43 FDFDSSELTGKARMKLLAKMADLQKQGVSSVSVFGFTDNV---GAEAYNKNLAKDRASTV 99 Query: 296 YQVLMKSGVSEDRISKISGF--AHHRLKIASDPMNSANRRIDILVED 340 + L GV +I+++ G + + SD NRR +I + + Sbjct: 100 ARFLANGGV---QINEVVGKPLCCYLVDNESDQNRHVNRRAEIHLGN 143 >gi|330901158|gb|EGH32577.1| OmpA/MotB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 451 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L + +++ G DA P R LS R Sbjct: 350 FAQGSARLDNKAQQDLKRVADYLKTSGKLNQHVTLVGFGDAKSDPERAAL-----LSRLR 404 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 405 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 451 >gi|209809116|ref|YP_002264654.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] gi|208010678|emb|CAQ81065.1| outer membrane protein, OmpA family [Aliivibrio salmonicida LFI1238] Length = 275 Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S+ P+ +V L + ++L H + I GH DA N L+++RA Sbjct: 164 FAFNSAELNPKYVVNLSEASQLLKKHEDFKLLITGHADAI---GEEDGNQELAIERAKQV 220 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-ASDPM-NSANRRIDILVED 340 + L G++ +RI + + ++P NRR+ I + + Sbjct: 221 KRYLSIFGLALNRIH-VDAVGSNDPYFEGTEPHVRLTNRRVTIELLE 266 >gi|251788834|ref|YP_003003555.1| outer membrane protein A [Dickeya zeae Ech1591] gi|247537455|gb|ACT06076.1| OmpA domain protein transmembrane region-containing protein [Dickeya zeae Ech1591] Length = 355 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G TD + N LS Sbjct: 227 KSDVLFNFNKATLKPEGQRSLDQLYSQLSSLDPKDGSVVVLGFTDRL---GSDQYNQTLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDIL 337 RA + L+ G+ ++IS G A+ +A +RR++I Sbjct: 284 TKRAQTVVDYLVHKGIPSNKISA-RGMGKANPVSGSTCANVKARAALIDCLAPDRRVEIE 342 Query: 338 VE 339 V+ Sbjct: 343 VK 344 >gi|149927733|ref|ZP_01915985.1| outer membrane protein [Limnobacter sp. MED105] gi|149823559|gb|EDM82789.1| outer membrane protein [Limnobacter sp. MED105] Length = 174 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S E ++Q + L + + ++G+TD R A N L RA + Sbjct: 73 FDYDSYTVKSEYRELVQNHAKYLVANPNRKVVVQGNTDE---RGGAEYNLALGQRRADAV 129 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 +++ GV E +I +S G + +++ + NRR DI+ Sbjct: 130 KTLMLALGVKEGQIETVSFGKEKPKATGSNEAAYAENRRSDIV 172 >gi|160897524|ref|YP_001563106.1| OmpA/MotB domain-containing protein [Delftia acidovorans SPH-1] gi|160363108|gb|ABX34721.1| OmpA/MotB domain protein [Delftia acidovorans SPH-1] Length = 174 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + +++ + L + + +RGHTD R N L RA + Sbjct: 73 FDFDAYTIRNSDRAIVESHAQWLRSNPGRSVMLRGHTDR---RGGIEYNLALGQKRADAV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 L GV+ R+ +S + RL S+ + NRR++ Sbjct: 130 RNSLQLLGVNPARVESVS-YGKERLADEGTSEEAHQRNRRVE 170 >gi|75676986|ref|YP_319407.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] gi|74421856|gb|ABA06055.1| OmpA/MotB [Nitrobacter winogradskyi Nb-255] Length = 663 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDR 291 F+ S + LQ I + V+A + + I GHTDA DN LS R Sbjct: 542 FETGSWDISDDQAAKLQVIADGINRVVARNPGEVFLIEGHTDAV---GNDVDNLSLSDRR 598 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA ++L + G+ LKI +D + NRR+ + Sbjct: 599 AQSAAELLTQQFQVPPENLVTQGYGEQNLKIQTDGPSRENRRVTV 643 >gi|222086232|ref|YP_002544764.1| outer membrane protein [Agrobacterium radiobacter K84] gi|221723680|gb|ACM26836.1| outer membrane protein [Agrobacterium radiobacter K84] Length = 838 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 10/106 (9%) Query: 237 FDKSSSIP----LPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V IG+++ E I GHTDA A N LS R Sbjct: 723 FATGSAEIPMSQASTLRGVADAIGQIIKKDPTETFLIEGHTDAV---GSAESNLILSDQR 779 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +VL GV + + G+ LK+ + NRR+ I Sbjct: 780 AESVAKVLSDVYGVPPENLVA-QGYGEQYLKVNTQGPEQENRRVTI 824 >gi|59801906|ref|YP_208618.1| Omp3 [Neisseria gonorrhoeae FA 1090] gi|194099400|ref|YP_002002501.1| Omp3 [Neisseria gonorrhoeae NCCP11945] gi|239999644|ref|ZP_04719568.1| Omp3 [Neisseria gonorrhoeae 35/02] gi|240014818|ref|ZP_04721731.1| Omp3 [Neisseria gonorrhoeae DGI18] gi|240017267|ref|ZP_04723807.1| Omp3 [Neisseria gonorrhoeae FA6140] gi|240081094|ref|ZP_04725637.1| Omp3 [Neisseria gonorrhoeae FA19] gi|240113304|ref|ZP_04727794.1| Omp3 [Neisseria gonorrhoeae MS11] gi|240116345|ref|ZP_04730407.1| Omp3 [Neisseria gonorrhoeae PID18] gi|240118630|ref|ZP_04732692.1| Omp3 [Neisseria gonorrhoeae PID1] gi|240121340|ref|ZP_04734302.1| Omp3 [Neisseria gonorrhoeae PID24-1] gi|240124175|ref|ZP_04737131.1| Omp3 [Neisseria gonorrhoeae PID332] gi|240126207|ref|ZP_04739093.1| Omp3 [Neisseria gonorrhoeae SK-92-679] gi|240128845|ref|ZP_04741506.1| Omp3 [Neisseria gonorrhoeae SK-93-1035] gi|254494359|ref|ZP_05107530.1| outer membrane protein P.III [Neisseria gonorrhoeae 1291] gi|260439836|ref|ZP_05793652.1| Omp3 [Neisseria gonorrhoeae DGI2] gi|268595455|ref|ZP_06129622.1| outer membrane protein PIII [Neisseria gonorrhoeae 35/02] gi|268597207|ref|ZP_06131374.1| outer membrane protein PIII [Neisseria gonorrhoeae FA19] gi|268599383|ref|ZP_06133550.1| outer membrane protein P.III [Neisseria gonorrhoeae MS11] gi|268602011|ref|ZP_06136178.1| outer membrane protein P.III [Neisseria gonorrhoeae PID18] gi|268604343|ref|ZP_06138510.1| outer membrane protein P.III [Neisseria gonorrhoeae PID1] gi|268682799|ref|ZP_06149661.1| outer membrane protein P.III [Neisseria gonorrhoeae PID332] gi|268684790|ref|ZP_06151652.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-92-679] gi|268687227|ref|ZP_06154089.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-93-1035] gi|291043111|ref|ZP_06568834.1| outer membrane protein PIII [Neisseria gonorrhoeae DGI2] gi|293398450|ref|ZP_06642628.1| outer membrane protein P.III [Neisseria gonorrhoeae F62] gi|129131|sp|P07050|OMP3_NEIGO RecName: Full=Outer membrane protein P.III; AltName: Full=Gonococcal protein III; Short=PIII; Flags: Precursor gi|44890|emb|CAA28752.1| unnamed protein product [Neisseria gonorrhoeae] gi|59718801|gb|AAW90206.1| outer membrane protein PIII [Neisseria gonorrhoeae FA 1090] gi|193934690|gb|ACF30514.1| Omp3 [Neisseria gonorrhoeae NCCP11945] gi|226513399|gb|EEH62744.1| outer membrane protein P.III [Neisseria gonorrhoeae 1291] gi|268548844|gb|EEZ44262.1| outer membrane protein PIII [Neisseria gonorrhoeae 35/02] gi|268550995|gb|EEZ46014.1| outer membrane protein PIII [Neisseria gonorrhoeae FA19] gi|268583514|gb|EEZ48190.1| outer membrane protein P.III [Neisseria gonorrhoeae MS11] gi|268586142|gb|EEZ50818.1| outer membrane protein P.III [Neisseria gonorrhoeae PID18] gi|268588474|gb|EEZ53150.1| outer membrane protein P.III [Neisseria gonorrhoeae PID1] gi|268623083|gb|EEZ55483.1| outer membrane protein P.III [Neisseria gonorrhoeae PID332] gi|268625074|gb|EEZ57474.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-92-679] gi|268627511|gb|EEZ59911.1| outer membrane protein P.III [Neisseria gonorrhoeae SK-93-1035] gi|291012717|gb|EFE04700.1| outer membrane protein PIII [Neisseria gonorrhoeae DGI2] gi|291610921|gb|EFF40018.1| outer membrane protein P.III [Neisseria gonorrhoeae F62] gi|317164900|gb|ADV08441.1| Omp3 [Neisseria gonorrhoeae TCDC-NG08107] Length = 236 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + L+ + + + GHTD F + N LS RAY Sbjct: 98 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSEKYNQALSERRAYV 154 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV RIS + G + Sbjct: 155 VANNLVSNGVPASRISAV-GLGESQ 178 >gi|190571199|ref|YP_001975557.1| peptidoglycan-associated lipoprotein, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018599|ref|ZP_03334407.1| peptidoglycan-associated lipoprotein, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357471|emb|CAQ54905.1| peptidoglycan-associated lipoprotein, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995550|gb|EEB56190.1| peptidoglycan-associated lipoprotein, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 159 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 17/135 (12%) Query: 212 VKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRG 270 KGV ++ I D F S + L + EVL ++ + +++ G Sbjct: 23 KKGVNTTNKMNAVVKQIGD--KRVFFGYDESSISEVSADALLDVMEVLQNNPDAKVTLTG 80 Query: 271 HTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPM 327 HTD R N L RA +A + ++ + E+RI S + D Sbjct: 81 HTDN---RGSHEYNLALGARRADAAKKFMVSCTPYLENRIKTAS-KGETEPLVNVKDDSR 136 Query: 328 N-------SANRRID 335 N + NRR++ Sbjct: 137 NSKYEKEHAKNRRVE 151 >gi|262193343|ref|YP_003264552.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] gi|262076690|gb|ACY12659.1| OmpA/MotB domain protein [Haliangium ochraceum DSM 14365] Length = 254 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + + VL + E + + + + GHTD N LS RA + Sbjct: 157 FDFDEAGIRDDAREVLTQAAECIRQAPADSGVYVEGHTDG---SGTEEYNVALSERRART 213 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + L + G+ R + + S +RR++ Sbjct: 214 VTEFLERLGIDPGRF-SVIAKGEG---VPSGEGTDKDRRVE 250 >gi|84687224|ref|ZP_01015105.1| Outer membrane protein, OmpA/MotB family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664812|gb|EAQ11295.1| Outer membrane protein, OmpA/MotB family protein [Rhodobacterales bacterium HTCC2654] Length = 647 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 15/267 (5%) Query: 73 GKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIF 132 GK +++ S QNP K D +I + + +R Sbjct: 379 GKEIVSNSGDRIVVQNPDGTYQVLKNDDTILRQPGVVVSTKSYNDGSTRTVVERDNGVRI 438 Query: 133 YLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRL 192 + K + + L T + +++++ P+ + Sbjct: 439 VTIRAADGTVLKRTRVMPNGDQYVLFDDTVEAQPVSQQDVQDYEPIDDIRASDSDEAALR 498 Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL----PET 248 + L + + V+ +I + + FD S++ E Sbjct: 499 EALMASMDRDPGRTYSLRQVRQFS-GVRDLAPVIEV----DAITFDTGSAVIRSGQAEEL 553 Query: 249 IVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSE 306 + Q I V+ + + I GHTDA A N LS RA S L + V Sbjct: 554 AALGQAIRSVIEERPDAVFLIEGHTDAV---GGAAYNLALSDRRAESVALALTEYFDVPP 610 Query: 307 DRISKISGFAHHRLKIASDPMNSANRR 333 + + G+ LKI + NRR Sbjct: 611 ENMI-TQGYGESELKIVTSEAERQNRR 636 >gi|83950087|ref|ZP_00958820.1| peptidoglycan-associated lipoprotein [Roseovarius nubinhibens ISM] gi|83837986|gb|EAP77282.1| peptidoglycan-associated lipoprotein [Roseovarius nubinhibens ISM] Length = 186 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + +F L + +L ++ I GH D N L R Sbjct: 76 DRVLFPVDQHTLTSTAQQTLNGQAQWLLRNTDYDALIEGHADEQ---GTREYNLALGARR 132 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337 A S + L+ GV R+ K+ + R + + + NRR + ++ Sbjct: 133 ANSVQEYLISQGVPSTRL-KVISYGKERPIEICSEESCYAQNRRSVTVI 180 >gi|332525605|ref|ZP_08401760.1| peptidoglycan-associated lipoprotein [Rubrivivax benzoatilyticus JA2] gi|332109170|gb|EGJ10093.1| peptidoglycan-associated lipoprotein [Rubrivivax benzoatilyticus JA2] Length = 180 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + E V+ + L T ++ GHTD R N L RA + Sbjct: 79 FDFDSYVVKDEYKPVIDANAKFLTLDKTVRLTAEGHTDE---RGGREYNLALGQKRAEAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDI 336 + L G + ++ +S F R + NRR+++ Sbjct: 136 VKALQVMGAAAGQVEPVS-FGKERPADPGHDEAAWSKNRRVEL 177 >gi|307132015|ref|YP_003884031.1| outer membrane protein A (3a;II*;G;d) [Dickeya dadantii 3937] gi|306529544|gb|ADM99474.1| outer membrane protein A (3a;II*;G;d) [Dickeya dadantii 3937] Length = 353 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G TD + N LS Sbjct: 225 KSDVLFNFNKATLKPEGQRSLDQLYSQLSTLDPKDGSVVVLGFTDRL---GSDQYNQTLS 281 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-----------SANRRIDIL 337 RA + L+ G+ ++IS G S N + +RR++I Sbjct: 282 TKRAQTVVDYLVHKGIPANKISA-RGMGKANPVSGSTCTNVKARAALIDCLAPDRRVEIE 340 Query: 338 VE 339 V+ Sbjct: 341 VK 342 >gi|218531252|ref|YP_002422068.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] gi|218523555|gb|ACK84140.1| OmpA/MotB domain protein [Methylobacterium chloromethanicum CM4] Length = 296 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDL--AKKISSTLSGLVADNI 211 L + ++ L+ E + RL+D ++ + + L A + Sbjct: 40 ASQLKDDQTVPLPEYRQIERERDRLATENADLSREVARLEDELRKERTNRLQTYLSAVSS 99 Query: 212 VKGVLFETTRTGILISIIDQRN-------------TPMFDKSSSIPLPETIVVLQKIGEV 258 + + T R +++ + N +F + V+ I Sbjct: 100 ERDRILRTLRDRLVVDFPELENIVSIETGALRFKGDGLFKTDRWQLAEDKRRVVTAIATR 159 Query: 259 LAH----------------------STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 L E + I GHTDA R N+ LS +RA Sbjct: 160 LNELLPCYTFGKAARWQASCNAAGAVIEAVQIEGHTDA---SGQDRSNFSLSTERAVETL 216 Query: 297 QVLMKS--GVSEDR------ISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 ++ + ++R + +SG+ R + NRRID+ + Sbjct: 217 FAMIGREPALLDNRNSAGQPVLSVSGYGRLRPVADNTSERGRATNRRIDLRI 268 >gi|186475502|ref|YP_001856972.1| OmpA/MotB domain-containing protein [Burkholderia phymatum STM815] gi|184191961|gb|ACC69926.1| OmpA/MotB domain protein [Burkholderia phymatum STM815] Length = 215 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYS 294 +FD +I P L + + + + G+TD + ++ RLSL RA + Sbjct: 101 LFDFDKAILKPAGKEKLDDLASKIQGLNLEVVVATGYTD--RIGSDKYND-RLSLRRAQA 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 L+ G+ +RI G N N RR+++ V Sbjct: 158 VKAYLVSKGIEANRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|146281899|ref|YP_001172052.1| putative outer membrane protein [Pseudomonas stutzeri A1501] gi|145570104|gb|ABP79210.1| putative outer membrane protein [Pseudomonas stutzeri A1501] Length = 229 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 216 LFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDA 274 FE R ++ + ++ + LP T+ + ++ +++ + I GH D+ Sbjct: 78 RFEVERRDNVLVVTAPVDSSFNPDRPGMLLPVTLGPITRVAKLVEKDEKTAVVILGHADS 137 Query: 275 SPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANR 332 + N +S +RA + + SG DR+ +I G + A+D + NR Sbjct: 138 T---GADDVNRTISRERASAVAAIFRLSGFKHDRL-RIRGLGSDMPRAANDSKEGRAMNR 193 Query: 333 RIDILVEDR 341 R+++++ + Sbjct: 194 RVEMVLAPQ 202 >gi|269123013|ref|YP_003305590.1| YadA domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314339|gb|ACZ00713.1| YadA domain protein [Streptobacillus moniliformis DSM 12112] Length = 2092 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 27/187 (14%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 L + + K + ++ N + +K K L++L KIS V + I Sbjct: 1925 NSLGELDGINKKLEEQNNKLIAQNNKLNEKRGDLSKELKELKDKIS------VIEKIKMN 1978 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHT 272 T G + I +L I L + I I G+T Sbjct: 1979 EDDLYTLDGYRLGIH-------------ELTKSQEEMLMNIVRELNENYKNRKIYITGYT 2025 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED---RISKISGFAHHRLKIASDPMNS 329 D + N L L RA + L + G+ R SG+ + S S Sbjct: 2026 DNV---SGEDLNLELGLKRANVVAKKLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRS 2082 Query: 330 ANRRIDI 336 +NRR++I Sbjct: 2083 SNRRVEI 2089 >gi|167035280|ref|YP_001670511.1| OmpA/MotB domain-containing protein [Pseudomonas putida GB-1] gi|166861768|gb|ABZ00176.1| OmpA/MotB domain protein [Pseudomonas putida GB-1] Length = 325 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 16/228 (7%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 S + + N + S+ + K ++T + K +S ++ Sbjct: 21 SHSPDGSKEGGSNWWPFGSDKVAEQEVKAAVTENVAKADAKSESASRWWWPFGGDDKQAK 80 Query: 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 KI + L + K+ + + + + T + + + P Sbjct: 81 GPVVPKIDQKATQAWLDEYEPKLREAIKDSKLELERRDNVLAVT---LPVDSSYNPDRP- 136 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 ++ LP T+ + ++ + + + + + GH D+ A N +LSL+RA S Sbjct: 137 -----NMLLPMTLGPITRVAKTVEGDPKTAVLVLGHADS---SGAAAANQKLSLERAASV 188 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVEDR 341 + SG+ DR++ + G + A+D S NRR+++L+ + Sbjct: 189 SAIFRLSGLQRDRLT-LKGMGSVMPRAANDSAEGRSLNRRVEMLLTPQ 235 >gi|17861366|gb|AAK61593.1| OmpA [Pasteurella multocida] Length = 348 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDCL---GSDAYNLKLSQRRADTV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 292 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 348 >gi|117920854|ref|YP_870046.1| OmpA/MotB domain-containing protein [Shewanella sp. ANA-3] gi|117613186|gb|ABK48640.1| OmpA/MotB domain protein [Shewanella sp. ANA-3] Length = 264 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 86/278 (30%), Gaps = 26/278 (9%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 N++ S + R S + + D G L Sbjct: 2 MKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLGGGALL 61 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +L S D K+ ++ +++ L +S ++ + +R Sbjct: 62 GALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQ---LASISAKQQASEQR 118 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K++ L+ + L G+ + F SS Sbjct: 119 AAEYASTQKQLDELLAE-------QQQLLSELALGMNVQ---------FRTGSSELESHF 162 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + L + +V+ S+E + ++G+ D R N LS R L+K GV+ + Sbjct: 163 LPQLDNVAKVMKRSSESNLELKGYADR---RGDLAYNQALSEQRLLEVRGYLIKQGVAPE 219 Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 RI+ F + +RR+ + ++ QG Sbjct: 220 RIT-TQAFGARMPLNDQQDSESDVFDRRVTLTMQPNQG 256 >gi|301060006|ref|ZP_07200880.1| OmpA family protein [delta proteobacterium NaphS2] gi|300445885|gb|EFK09776.1| OmpA family protein [delta proteobacterium NaphS2] Length = 218 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 59/152 (38%), Gaps = 23/152 (15%) Query: 192 LQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL--ISIIDQRNTPMFDKSSSIPLPETI 249 + D K ++ L+ + E T + + ++ Q F SS+ + I Sbjct: 83 MDDRKKDLTKALAPQINAG-------EVTLQVLKGNVILVTQTGETAFAPGSSVVKQDFI 135 Query: 250 VVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 +Q + ++ ++ + I GH D + + + L+ RA + + + G+S Sbjct: 136 STIQTVANIMKTYGKMTVDIIGHPDRTGTKTERQT---LADQRAEAVRTMFLGMGISPA- 191 Query: 309 ISKISGFAHHRLKIASDPMNSANRRIDILVED 340 + + SG A+ + R+++++ Sbjct: 192 LVRSSGNANSQYLDG---------RVELVITP 214 >gi|291288745|ref|YP_003505561.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885905|gb|ADD69605.1| OmpA/MotB domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 296 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 20/139 (14%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKS--SSIPLPETIVVLQKIGEVLAHST----EVI 266 + + G ++ + + T D S+ + + +GE T +I Sbjct: 152 SHTIENIEKEGSVVVVFEANGTECADNGILSANLNEQG-AIYFALGEFRKELTDKEINII 210 Query: 267 S---------IRGHTDASPFR--NIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 S I GHTD DN+ LS RA L ++G+ + + + G Sbjct: 211 SNANNAKKYVIIGHTDDVRVVPNTEYADNFELSAKRAAFFLNKLTEAGIPAENV-QTLGL 269 Query: 316 AHHRLKIASDPMN-SANRR 333 + NRR Sbjct: 270 GPAFPAAPNKKNGQPLNRR 288 >gi|254496226|ref|ZP_05109120.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella drancourtii LLAP12] gi|254354531|gb|EET13172.1| peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL) [Legionella drancourtii LLAP12] Length = 175 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S P+ + + E L H+ + + GHTD R N L RA + Sbjct: 70 LFSYDDSNLNPKYLPSVNAQAEYLKSHAGARVLVAGHTDE---RGSREYNVALGERRANT 126 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRID 335 +L +GVS +I +I + R + + NRR++ Sbjct: 127 VADILRMAGVSRQQI-RIVSYGKERPINLGHDEASHLQNRRVE 168 >gi|237798824|ref|ZP_04587285.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021677|gb|EGI01734.1| ompA family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 389 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + + Sbjct: 161 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLVL 220 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+ + G + A+D Sbjct: 221 GHGDT---SGPTEANQKISQERAQSVAAIFRLSGLERNRL-SLRGMGAVMPRAANDSLQG 276 Query: 328 NSANRRIDILVEDR 341 + NRR++IL+ + Sbjct: 277 RALNRRVEILMTPQ 290 >gi|148652725|ref|YP_001279818.1| peptidoglycan-associated lipoprotein [Psychrobacter sp. PRwf-1] gi|148571809|gb|ABQ93868.1| Peptidoglycan-associated lipoprotein [Psychrobacter sp. PRwf-1] Length = 170 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E +L + L+ + + + GHTD R + N L RA + Sbjct: 70 FAFDSYDIDAEAANILDEQVAFLSSHPDARVLVAGHTDE---RGSSEYNHALGERRAQAV 126 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDI 336 L G+ + R+ IS + R A + S NRR ++ Sbjct: 127 RSYLASKGIMDARVETIS-YGEDRPVAAGSDEASYSQNRRAEL 168 >gi|312270721|gb|ADQ55761.1| OmpA [Haemophilus parasuis] gi|312270723|gb|ADQ55762.1| OmpA [Haemophilus parasuis] Length = 366 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L E++ + + G+TD N LS RA Sbjct: 246 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 302 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 303 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 361 Query: 342 Q 342 + Sbjct: 362 K 362 >gi|299773241|gb|ADJ38695.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773245|gb|ADJ38697.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|209968924|gb|ACJ02823.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|209968918|gb|ACJ02820.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968922|gb|ACJ02822.1| outer membrane protein P5 [Haemophilus parasuis] gi|224714277|gb|ACN62133.1| outer membrane protein A [Haemophilus parasuis] gi|224714281|gb|ACN62135.1| outer membrane protein A [Haemophilus parasuis] Length = 367 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|152971453|ref|YP_001336562.1| putative outer membrane lipoprotein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956302|gb|ABR78332.1| iron-regulated membrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 127 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 ++ +FDK+ P++ + + LA + + GHTD N LSL R Sbjct: 19 DSILFDKNDYRLRPDSRQQITTMASRLAATGITHSRLEGHTDNY---GEDSYNEALSLKR 75 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDP--MNSANRRIDILV 338 A S G R + ++ G ++D + NRR+ +++ Sbjct: 76 ANSVADA-WAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVI 124 >gi|114778405|ref|ZP_01453252.1| outer membrane protein A precursor [Mariprofundus ferrooxydans PV-1] gi|114551368|gb|EAU53925.1| outer membrane protein A precursor [Mariprofundus ferrooxydans PV-1] Length = 360 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLS 288 D +F + S E L K E L ++ + + G+TD N +LS Sbjct: 236 DSSANSLFGFNRSTLRNEGKRALDKFVESLKGASFETMVVTGYTD--RIGTDEY-NQKLS 292 Query: 289 LDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASD--PMNSAN---------RRIDI 336 RA + L+K G+ D+I+ G + S N RR+++ Sbjct: 293 ERRANAVRDYLVKFGGIPADKITA-RGAGESNPVTKREDCAGKSGNPLITCLAPDRRVEV 351 Query: 337 LV 338 V Sbjct: 352 EV 353 >gi|103488202|ref|YP_617763.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] gi|98978279|gb|ABF54430.1| OmpA/MotB [Sphingopyxis alaskensis RB2256] Length = 294 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ + L + + G+TD++ N LS RA + Sbjct: 183 FDVGKAVLSAQAKADLCATAAAAEAMDNALLLVVGYTDST---GSQEFNQMLSEKRAGAV 239 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDRQG 343 L ++ G R+ +G A ++ + NRR+ + V +G Sbjct: 240 VNHLQQACGWKPYRMLTPTGMAEADPAADNETPEGKAQNRRVAVNVLVSKG 290 >gi|333029776|ref|ZP_08457837.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011] gi|332740373|gb|EGJ70855.1| OmpA/MotB domain protein [Bacteroides coprosuis DSM 18011] Length = 389 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S +V +Q + E + + + + G+ D++ N RLS RA + Sbjct: 293 FFQIGKSNLTSRDLVTVQMMAESIKATDKTYKVVGYADSA--TGSKALNQRLSEARANAV 350 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GV E ++ + G D S R+ I+ Sbjct: 351 KDALIKEGVKESQLE-VVGMGGVDSVFGKDNQLS---RVVIV 388 >gi|89052778|ref|YP_508229.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88862327|gb|ABD53204.1| phosphate ABC transporter substrate-binding protein, PhoT family [Jannaschia sp. CCS1] Length = 513 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 16/160 (10%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGI--LISIIDQRNTPM----FDKSSSIPLP 246 L + L G N ++ + + ++ ++D F+ + Sbjct: 357 NQLLTRTPLALQGERLSNAIRAAGEDVDLQELQTVMEVLDSAERLSTTLRFNAGGADLDI 416 Query: 247 ETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 ++ + ++ + T + G +D + N RLSL RA +M +G Sbjct: 417 QSRASVGRLAAAIERGTFDGRQLIFAGFSDGDGPSTV---NARLSLRRADVVRDAVMAAG 473 Query: 304 VSE-DRISKIS-GFAHHRLKIASDP--MNSANRRIDILVE 339 V+ DR+ ++ GF D + NRR+++ V+ Sbjct: 474 VAALDRVELVTVGFGEAMPMACDDTDWGRAVNRRVEVWVD 513 >gi|49182354|gb|AAT57679.1| OmpA [Pasteurella multocida] Length = 353 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 240 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 L+ GV+++ IS +G + + +RR++I V Sbjct: 297 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIAV 349 >gi|330955558|gb|EGH55818.1| OmpA/MotB [Pseudomonas syringae Cit 7] Length = 265 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 7/130 (5%) Query: 211 IVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIR 269 +K F+ R L++I ++ ++ LP T+ + ++ +V+ + I Sbjct: 105 AIKDSPFQLERREDLLAITAPVDSSFNPDRPAMLLPNTLGPITRLAKVVEGDQKTAVLIL 164 Query: 270 GHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M 327 GH D N ++S +RA S + SG+ +R+S+ G + A+D Sbjct: 165 GHADT---SGPTEANQKISQERAQSVAAIFRLSGLERNRLSQ-RGMGAVMPRAANDSLQG 220 Query: 328 NSANRRIDIL 337 + NRR++IL Sbjct: 221 RALNRRVEIL 230 >gi|330828258|ref|YP_004391210.1| outer membrane protein A [Aeromonas veronii B565] gi|328803394|gb|AEB48593.1| Outer membrane protein A [Aeromonas veronii B565] Length = 345 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + + PE L + + + V ++ GHTD + A N +LS RA Sbjct: 226 LFDFNKATLKPEASQALDSLYSQIEEARPKDGVATVIGHTD--RIGSDAY-NQKLSEQRA 282 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + L+ G+ +I+ + G Sbjct: 283 QTVANYLVGKGIPAAKIN-VEGRGKSSPVTGD 313 >gi|296159971|ref|ZP_06842791.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] gi|295889717|gb|EFG69515.1| OmpA/MotB domain protein [Burkholderia sp. Ch1-1] Length = 215 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD +I P L + + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKAILKPGGKEKLDDLASKIGALNLEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ G+ +RI G N N RR+++ V Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|148262285|ref|YP_001228991.1| OmpA/MotB domain-containing protein [Geobacter uraniireducens Rf4] gi|146395785|gb|ABQ24418.1| OmpA/MotB domain protein [Geobacter uraniireducens Rf4] Length = 194 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + + +L + +L + I GH D R N L RA SA Sbjct: 92 FDFDSFVLTQTSRDILSNNAKWLLKTGRAKVQIEGHCDE---RGSDEYNLALGEKRAKSA 148 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 L+ GV D++S IS + + ++ + NRR + ++ Sbjct: 149 MNYLVTLGVPADQLSVIS-YGKEKPADPGHNEAAWAKNRRAEFVI 192 >gi|294139759|ref|YP_003555737.1| OmpA family protein [Shewanella violacea DSS12] gi|293326228|dbj|BAJ00959.1| OmpA family protein [Shewanella violacea DSS12] Length = 361 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTD 273 V ETT + SI F +SS E+ ++K+ + + + + I GH Sbjct: 235 VYTETTEQRDVGSIQ-------FANNSSAVKTESFERIEKLATYMNTNPKSTVLISGHAS 287 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKS-GVSEDRISKISGFAHHRLKI--ASDPMNSA 330 A N LS RA + ++L++ G+S+DR+ GF + I S N A Sbjct: 288 NV---GKADYNMILSDKRAKAVAKILVEKFGISQDRVEA-KGFGVTQPIIQGRSVEANKA 343 Query: 331 NRRID 335 NRRI+ Sbjct: 344 NRRIE 348 >gi|292487869|ref|YP_003530744.1| outer membrane protein A [Erwinia amylovora CFBP1430] gi|292899094|ref|YP_003538463.1| outer membrane protein A [Erwinia amylovora ATCC 49946] gi|291198942|emb|CBJ46052.1| outer membrane protein A [Erwinia amylovora ATCC 49946] gi|291553291|emb|CBA20336.1| Outer membrane protein A precursor [Erwinia amylovora CFBP1430] gi|312171991|emb|CBX80248.1| Outer membrane protein A precursor [Erwinia amylovora ATCC BAA-2158] Length = 355 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 24/125 (19%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L++ + + G+TD + N +LS Sbjct: 227 KSDVLFTFNKSTLKPEGQQALDQLYTQLSNLDPKDGSVVVLGYTD--RIGSEQY-NQKLS 283 Query: 289 LDRAYSAYQVLMKSGVSEDRISK--------ISG------FAHHRLKIASDPMNSANRRI 334 RA S L+ G+ ++IS ++G L P RR+ Sbjct: 284 EKRAQSVVDYLVSKGIPSNKISARGEGKSNPVTGNTCDSVKGRKALIDCLAPD----RRV 339 Query: 335 DILVE 339 +I V+ Sbjct: 340 EIQVK 344 >gi|167586522|ref|ZP_02378910.1| OmpA/MotB domain protein [Burkholderia ubonensis Bu] Length = 223 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L + + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKATLKPLGKQKLDDLAGKIQGMNTEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ G+ ++I G N N RR+++ V Sbjct: 154 RAQAVKSYLVSKGIPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 210 Query: 340 DRQ 342 Q Sbjct: 211 GTQ 213 >gi|37704654|gb|AAR01599.1| OprF [Pseudomonas sp. MFY143] Length = 297 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD ++ + + ++ + + + ++ G+TD+ N +LS RA S Sbjct: 215 FDFDKAVVKSQYLPDIKNVAQFMQQYPATSTTVNGYTDSV---GTDAYNLKLSQRRADSV 271 Query: 296 YQVLMKSGVSEDRISKIS-GFAHH 318 Q L++ GVS R+ + G A Sbjct: 272 RQALVQQGVSACRVDAVGHGKADP 295 >gi|319641322|ref|ZP_07996019.1| outer membrane protein [Bacteroides sp. 3_1_40A] gi|317387068|gb|EFV67950.1| outer membrane protein [Bacteroides sp. 3_1_40A] Length = 474 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 236 MFDKSSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +++ + + L ++ V + + G D+S + D+ LS RA Sbjct: 377 FFTLNTARLTDVSQKLNLDELARVAKKYDLHVRVTGAADSSTGTSGINDS--LSQSRADF 434 Query: 295 AYQVLMKSGVSEDRISKIS--GFAHHRLKIAS 324 L + G+ +RI+KIS G A H+ A+ Sbjct: 435 IVSELKQRGIPAERITKISRGGIADHQPTEAN 466 >gi|157373221|ref|YP_001471821.1| hypothetical protein Ssed_0080 [Shewanella sediminis HAW-EB3] gi|157315595|gb|ABV34693.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 304 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL--AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ +S V L+ I + + + + I + H DA N LS +RA Sbjct: 183 FESGTSKLTAAHEVDLEAIAQYVQADATVKEILVDAHADA---SGEHLANLVLSKERADE 239 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDI 336 L + G+ + +I ++ ++++ NRR+ I Sbjct: 240 VASRLFELGIQKQKI-QVRHHGARSPIVSNNSPEGREINRRVTI 282 >gi|91784820|ref|YP_560026.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans LB400] gi|91688774|gb|ABE31974.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 215 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 18/119 (15%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD +I P L + + + + G+TD + ++ RLSL Sbjct: 97 QADALFDFDKAILKPGGKEKLDDLASKIGSLNLEVVVATGYTD--RIGSDKYND-RLSLR 153 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILV 338 RA + L+ G+ +RI G N N RR+++ V Sbjct: 154 RAQAVKAYLVSKGIESNRIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEV 209 >gi|271501514|ref|YP_003334540.1| OmpA domain-containing protein transmembrane region-containing protein [Dickeya dadantii Ech586] gi|270345069|gb|ACZ77834.1| OmpA domain protein transmembrane region-containing protein [Dickeya dadantii Ech586] Length = 354 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L+ + + G TD + N LS Sbjct: 226 KSDVLFNFNKATLKPEGQRSLDQLYTQLSTLDPKDGSVVVLGFTDRL---GSDQYNQTLS 282 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI----ASDPMNSA-------NRRIDIL 337 RA + L+ G+ ++IS G A+ +A +RR++I Sbjct: 283 AKRAQTVVDYLVHKGIPSNKISA-RGMGKANPVTGSTCANVKARAALIECLSPDRRVEIE 341 Query: 338 VE 339 V+ Sbjct: 342 VK 343 >gi|221134028|ref|ZP_03560333.1| outer membrane protein [Glaciecola sp. HTCC2999] Length = 249 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 10/147 (6%) Query: 193 QDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVL 252 + + L +V + +++ V + TT + + + ++ F S L Sbjct: 98 HQTQAQTIAQLQQMVDEPVIQQVNY-TTPS--VFDFPEMQSHIQFTTGISEVASAYHGQL 154 Query: 253 QKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 + +VL +++ G D R DN LS R + +L+K GVSED+I Sbjct: 155 ALLAQVLTKQPQLQVTLTGFAD---LRGTDDDNLALSSARVAAVKSMLVKEGVSEDQIKT 211 Query: 312 ISGFAHHRLKIAS--DPMNSANRRIDI 336 I+ R S D +RR+ I Sbjct: 212 IA-LGEARALQTSNWDESLVFDRRVTI 237 >gi|238789280|ref|ZP_04633067.1| Outer membrane protein A [Yersinia frederiksenii ATCC 33641] gi|238722612|gb|EEQ14265.1| Outer membrane protein A [Yersinia frederiksenii ATCC 33641] Length = 357 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 229 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++I+ G + P + +RR++I Sbjct: 286 QRRADSVRDYLVSKGIPAEKITA-RGEGQANPVTGNTCDNVKPRAALIDCLAPDRRVEIE 344 Query: 338 VE 339 V+ Sbjct: 345 VK 346 >gi|258650298|ref|YP_003199454.1| OmpA/MotB domain-containing protein [Nakamurella multipartita DSM 44233] gi|258553523|gb|ACV76465.1| OmpA/MotB domain protein [Nakamurella multipartita DSM 44233] Length = 378 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 5/99 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F + + + + L + E + IS+ G T A P + LS RA Sbjct: 273 LFLPNQAALIDKA-ATLTALSECVGTVDPSTKISVEGRTAAVPGGDPQ-GAIDLSTQRAT 330 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 +L + GV + I+ + G + + NR Sbjct: 331 EVAVLLQEVGVPGENITSVVGLGDSSPLVQP-ASDPENR 368 >gi|255527288|ref|ZP_05394168.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|255509026|gb|EET85386.1| conserved hypothetical protein [Clostridium carboxidivorans P7] Length = 107 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 +KKK + N W + Y+DFMT+LM F+V++ ++ D + Q + Sbjct: 1 MKKKKQEEHE--NSERWLLSYSDFMTLLMILFVVLYAMSNVDKAKFSQLSQSMS 52 >gi|109390002|gb|ABG29730.1| OmpA [Riemerella anatipestifer] Length = 255 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 145 FFNFNKASIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 201 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GV+ ++ SK G A AS+ +R++ Sbjct: 202 VVAALEARGVNPSQLKSKGVGSAEATVPASASNEERMKDRKV 243 >gi|16273088|ref|NP_439322.1| outer membrane protein P5 [Haemophilus influenzae Rd KW20] gi|1171899|sp|P43840|OMP51_HAEIN RecName: Full=Outer membrane protein P5; Short=OMP P5; Flags: Precursor gi|1574091|gb|AAC22819.1| outer membrane protein P5 (ompA) [Haemophilus influenzae Rd KW20] Length = 353 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 240 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 296 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILV 338 + GV+ D IS +G+ + D + +RR++I V Sbjct: 297 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACFAPDRRVEIAV 349 >gi|294085867|ref|YP_003552627.1| peptidoglycan-associated lipoprotein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665442|gb|ADE40543.1| Peptidoglycan-associated lipoprotein [Candidatus Puniceispirillum marinum IMCC1322] Length = 186 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 NT FD S++ + V L + L + E V+ I GH D R N L R Sbjct: 81 NTVYFDFDSAVLSYDAQVTLSRQSAFLQLNPEAVVVIEGHCDE---RGTREYNLALGDRR 137 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A +A L+ G+ RI +S G + +++ + NRR Sbjct: 138 ASAARDFLLAKGIDAARIRTVSYGKERPAMLGSNEESWAKNRR 180 >gi|57168163|ref|ZP_00367302.1| probable periplasmic protein Cj0599 [Campylobacter coli RM2228] gi|57020537|gb|EAL57206.1| probable periplasmic protein Cj0599 [Campylobacter coli RM2228] Length = 316 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 106/332 (31%), Gaps = 56/332 (16%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTA 79 + W I YAD M L+ F+++ + + I+ N L Sbjct: 2 KNEQEEGNFW-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLREIKDNLNKQEARL--- 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 E++ E ++ I + + S L N+ ++ Sbjct: 58 ------EESKEELRNKEAIVFKLSSDLNNASSAL----------------NLINSQKAEL 95 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + N E + + + + + K K+++Q+L+ I Sbjct: 96 EANITNYEQLSKELNSSIDNKDKQILILLGQLEKKDEEIRNLQESFDKAKEKVQNLS-LI 154 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--- 256 LS + + + + IS+ + +FDK S E L+KI Sbjct: 155 RENLSKELQAKLDSNITIDQKTG--SISL---PSEVLFDKDSYTLKNEAKASLRKILSEY 209 Query: 257 --------EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSE-- 306 ++L++ I I GHTD+ N LS RAY + Sbjct: 210 FNAIINDPKILSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKDTRL 265 Query: 307 DRISKISG--FAHHRLKIASDPMNSANRRIDI 336 ++ SG F+ L + + + RRI+I Sbjct: 266 QKLLMASGRSFSDPVLVNGVEDKDKS-RRIEI 296 >gi|51595793|ref|YP_069984.1| outer membrane protein A [Yersinia pseudotuberculosis IP 32953] gi|108806724|ref|YP_650640.1| outer membrane protein A [Yersinia pestis Antiqua] gi|108812705|ref|YP_648472.1| outer membrane protein A [Yersinia pestis Nepal516] gi|145598823|ref|YP_001162899.1| outer membrane protein A [Yersinia pestis Pestoides F] gi|149366590|ref|ZP_01888624.1| putative outer membrane porin A protein [Yersinia pestis CA88-4125] gi|162418551|ref|YP_001607555.1| outer membrane protein A [Yersinia pestis Angola] gi|165924613|ref|ZP_02220445.1| outer membrane protein A [Yersinia pestis biovar Orientalis str. F1991016] gi|165940134|ref|ZP_02228667.1| outer membrane protein A [Yersinia pestis biovar Orientalis str. IP275] gi|166011945|ref|ZP_02232843.1| outer membrane protein A [Yersinia pestis biovar Antiqua str. E1979001] gi|166211728|ref|ZP_02237763.1| outer membrane protein A [Yersinia pestis biovar Antiqua str. B42003004] gi|167402334|ref|ZP_02307802.1| outer membrane protein A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419876|ref|ZP_02311629.1| outer membrane protein A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424140|ref|ZP_02315893.1| outer membrane protein A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024855|ref|YP_001721360.1| outer membrane protein A [Yersinia pseudotuberculosis YPIII] gi|186894876|ref|YP_001871988.1| outer membrane protein A [Yersinia pseudotuberculosis PB1/+] gi|218928581|ref|YP_002346456.1| outer membrane protein A [Yersinia pestis CO92] gi|229841410|ref|ZP_04461569.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843520|ref|ZP_04463663.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar Orientalis str. India 195] gi|229894379|ref|ZP_04509562.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis Pestoides A] gi|270486903|ref|ZP_06203977.1| outer membrane protein A [Yersinia pestis KIM D27] gi|294503419|ref|YP_003567481.1| putative outer membrane porin A protein [Yersinia pestis Z176003] gi|55976558|sp|Q8ZG77|OMPA_YERPE RecName: Full=Outer membrane protein A; Flags: Precursor gi|55977792|sp|P38399|OMPA_YERPS RecName: Full=Outer membrane protein A; AltName: Full=Outer membrane protein II; Flags: Precursor gi|51589075|emb|CAH20693.1| putative outer membrane porin A protein [Yersinia pseudotuberculosis IP 32953] gi|108776353|gb|ABG18872.1| outer membrane porin A protein [Yersinia pestis Nepal516] gi|108778637|gb|ABG12695.1| putative outer membrane porin A protein [Yersinia pestis Antiqua] gi|115347192|emb|CAL20086.1| putative outer membrane porin A protein [Yersinia pestis CO92] gi|145210519|gb|ABP39926.1| outer membrane porin A protein [Yersinia pestis Pestoides F] gi|149290964|gb|EDM41039.1| putative outer membrane porin A protein [Yersinia pestis CA88-4125] gi|162351366|gb|ABX85314.1| outer membrane protein A [Yersinia pestis Angola] gi|165911957|gb|EDR30601.1| outer membrane protein A [Yersinia pestis biovar Orientalis str. IP275] gi|165923673|gb|EDR40805.1| outer membrane protein A [Yersinia pestis biovar Orientalis str. F1991016] gi|165989112|gb|EDR41413.1| outer membrane protein A [Yersinia pestis biovar Antiqua str. E1979001] gi|166207499|gb|EDR51979.1| outer membrane protein A [Yersinia pestis biovar Antiqua str. B42003004] gi|166962617|gb|EDR58638.1| outer membrane protein A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048300|gb|EDR59708.1| outer membrane protein A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056989|gb|EDR66752.1| outer membrane protein A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751389|gb|ACA68907.1| OmpA domain protein transmembrane region-containing protein [Yersinia pseudotuberculosis YPIII] gi|186697902|gb|ACC88531.1| OmpA domain protein transmembrane region-containing protein [Yersinia pseudotuberculosis PB1/+] gi|229689128|gb|EEO81191.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar Orientalis str. India 195] gi|229697776|gb|EEO87823.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703777|gb|EEO90793.1| outer membrane protein A (3a;II*;G;d) [Yersinia pestis Pestoides A] gi|262361462|gb|ACY58183.1| putative outer membrane porin A protein [Yersinia pestis D106004] gi|262365389|gb|ACY61946.1| putative outer membrane porin A protein [Yersinia pestis D182038] gi|270335407|gb|EFA46184.1| outer membrane protein A [Yersinia pestis KIM D27] gi|294353878|gb|ADE64219.1| putative outer membrane porin A protein [Yersinia pestis Z176003] gi|320015699|gb|ADV99270.1| outer membrane protein A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 353 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%) Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279 I+D + + +F + + PE L ++ L+ + + G D Sbjct: 216 IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 272 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330 N LS RA S L+ G+ D+I+ G + P + Sbjct: 273 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 331 Query: 331 --NRRIDILVE 339 +RR++I V+ Sbjct: 332 APDRRVEIEVK 342 >gi|329902808|ref|ZP_08273256.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium IMCC9480] gi|327548603|gb|EGF33260.1| Outer membrane protein A precursor [Oxalobacteraceae bacterium IMCC9480] Length = 392 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + L + +S+ G+TD + N LS RA + Sbjct: 281 FAFGQATLTAAGKTQLDMLITAANAGGYGSVSVDGYTDQI---GSDKVNLALSTARATTI 337 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI-----------ASDPMNSANRRIDILV 338 L+ G+S +I + +G LK+ A + NRR+D+ + Sbjct: 338 RDYLLAHGLSALQI-RATGHGATSLKVELAQCAGSTGAALQTCLAPNRRVDVTL 390 >gi|302536573|ref|ZP_07288915.1| type VI secretion system OmpA/MotB [Streptomyces sp. C] gi|302445468|gb|EFL17284.1| type VI secretion system OmpA/MotB [Streptomyces sp. C] Length = 212 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 9/135 (6%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HST 263 V +++ + T +++++ ++ +F ++S++ + +Q I + + Sbjct: 76 AEVVEDLGGEQRRQETNQNVMMAL---QSEVLFPENSAVFNAQAASRIQAIAQEINTQKA 132 Query: 264 EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK-- 321 I + G TD LS RA + L K+ + + G++ Sbjct: 133 TRIRVFGFTDDQ---GSYEHGKELSKQRADAVQAELAKTVTNPAVTYDVRGYSEDYPIAD 189 Query: 322 IASDPMNSANRRIDI 336 +++ NRR++I Sbjct: 190 NSTEEGRKKNRRVEI 204 >gi|237800676|ref|ZP_04589137.1| OmpA family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023535|gb|EGI03592.1| OmpA family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 446 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L + +++ G DA P R LS R Sbjct: 345 FAQGSARLDNKAQQDLKRVADYLKAQDKLDQHVTLVGFGDAKSDPARATL-----LSRLR 399 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ +I G + D NRR+++ V+ Sbjct: 400 AMAVRRELLKSGVT---FREILGLGDEMPVANNDIDDGRIKNRRVEVWVQ 446 >gi|71906104|ref|YP_283691.1| OmpA/MotB [Dechloromonas aromatica RCB] gi|71845725|gb|AAZ45221.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 217 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 19/132 (14%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPF 277 +G I++ +FD + ++ P L ++ + + GHTD Sbjct: 89 VKPSGEKITVAAD---ALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTD--RI 143 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA------ 330 + + N +LS RA + + L+ G+ +R+ G + N+ Sbjct: 144 GSDSY-NQKLSEKRAAAVKEYLVAKGIEANRVY-TEGKGEKQPVTGDKCKGNAKTKALID 201 Query: 331 ----NRRIDILV 338 +RR+DI V Sbjct: 202 CLQPDRRVDIEV 213 >gi|71906867|ref|YP_284454.1| OmpA/MotB [Dechloromonas aromatica RCB] gi|71846488|gb|AAZ45984.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 219 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 19/132 (14%) Query: 219 TTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPF 277 +G I++ +FD + ++ P L ++ + + GHTD Sbjct: 91 VKPSGEKITVAAD---ALFDFNKAVLRPAGKAKLDELVSKAKAIKLEVILAVGHTD--RI 145 Query: 278 RNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-PMNSA------ 330 + + N +LS RA + + L+ G+ +R+ G + N+ Sbjct: 146 GSDSY-NQKLSEKRAAAVKEYLVAKGIEANRVY-TEGKGEKQPVTGDKCKGNAKTKALID 203 Query: 331 ----NRRIDILV 338 +RR+DI V Sbjct: 204 CLQPDRRVDIEV 215 >gi|312892475|ref|ZP_07751968.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] gi|311295055|gb|EFQ72231.1| OmpA/MotB domain protein [Mucilaginibacter paludis DSM 18603] Length = 724 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 91/302 (30%), Gaps = 38/302 (12%) Query: 68 YFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK--QYQ 125 YF+ G + IF R + +L + + + L Sbjct: 410 YFSSTGHPGL-GGLDIFKVTLKGPRPINSPANLGAPVNSSVDDFGLIRSEDGASGFFSSN 468 Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 R ++ Y Q L D++ G+ + S +S N K L Sbjct: 469 RRGSDDIYGFTYQPFNLALKGLVVDADSGQPIPNSYVAIRSKNNISLKTNAQGGFSKSLN 528 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS-------------IIDQR 232 + L S+ + IV T + IS I+ Sbjct: 529 KETDYSLSATKDGYSTDEGTVTTKGIVSDTTLTIT---LRISKKAQDQQFDGPKKILCDS 585 Query: 233 NTPMFDKSS-------SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDN 284 +F S P+ L + +L + + H D +I N Sbjct: 586 LRELFSIGKIYYDLDKSFIRPDAEGALNHLINLLNSYPGLKVIVASHCDTR--ASIDY-N 642 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDIL 337 LS R+ SA L+ GVSE+RI ++ F RL ++ + NRR + + Sbjct: 643 IGLSQRRSLSARAYLLAHGVSENRI-QMEYFGKSRLANKCADGVPCTEADHQLNRRTEFV 701 Query: 338 VE 339 + Sbjct: 702 LL 703 >gi|305431690|ref|ZP_07400859.1| chemotaxis protein MotB [Campylobacter coli JV20] gi|304445285|gb|EFM37929.1| chemotaxis protein MotB [Campylobacter coli JV20] Length = 316 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 107/332 (32%), Gaps = 56/332 (16%) Query: 24 DDTPNNLGSWKIVYADFMTVLMAFFLVM----WIINATDDDTKKAIEQYFNPFGKNLMTA 79 + W I YAD M L+ F+++ + + I+ N L Sbjct: 2 KNEQEEGNFW-IAYADLMAGLLFVFILLIGAIVVKYVLTQSDLREIKDNLNKQEARL--- 57 Query: 80 SKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQ 139 E++ E ++ I + + S L N+ ++ Sbjct: 58 ------EESKEELRNKEAIVFKLSSDLNNASSAL----------------NLINSQKAEL 95 Query: 140 SEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKI 199 + N E + + + + + K K+++Q+L+ I Sbjct: 96 EANITNYEQLSKELNSSIDNKDKQILILLGQLEKKDEEIRNLQESFDKAKEKVQNLS-LI 154 Query: 200 SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG--- 256 LS + + + + IS+ + +FDK S E L+KI Sbjct: 155 RENLSKELQAKLDSNITIDQKTG--SISL---PSEVLFDKDSYTLKNEAKASLRKILSEY 209 Query: 257 --------EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK--SGVSE 306 ++L++ I I GHTD+ N LS RAY + + Sbjct: 210 FNAIINDPKILSNIEN-IIIEGHTDS---DGSYIYNLDLSQKRAYEVMNFIYTFYKDIRL 265 Query: 307 DRISKISG--FAHHRLKIASDPMNSANRRIDI 336 ++ SG F+ L + + + RRI+I Sbjct: 266 QKLLMASGRSFSDPVLVNGVEDKDKS-RRIEI 296 >gi|85706710|ref|ZP_01037802.1| peptidoglycan-associated lipoprotein [Roseovarius sp. 217] gi|85668768|gb|EAQ23637.1| peptidoglycan-associated lipoprotein [Roseovarius sp. 217] Length = 170 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 11/106 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSL 289 + +F+ L L T I GH D N L Sbjct: 60 DRVLFEVDQPTLNATAQSTLDGQANWL--MTNRDFTAVIEGHADEQ---GTREYNLALGA 114 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 RA + + L+ GV+ +R+ ++ F R +++ + NRR Sbjct: 115 RRANAVQEYLITQGVAPNRL-RVVSFGKERPIEICSNEACYTKNRR 159 >gi|325518447|gb|EGC98149.1| OOP family OmpA-OmpF porin [Burkholderia sp. TJI49] Length = 207 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 81 QADALFDFDKATLKPLGKQKLDELASKIEGMNTEVVVATGYTD--RIGSDKYND-RLSLR 137 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++I G N N RR+++ V Sbjct: 138 RAQAVKSYLVSKGVPANKIY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 194 Query: 340 DRQ 342 Q Sbjct: 195 GTQ 197 >gi|296534564|ref|ZP_06896978.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957] gi|296265104|gb|EFH11315.1| outer membrane protein MopB [Roseomonas cervicalis ATCC 49957] Length = 97 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Query: 242 SIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 + ++ + + T I + GH D + N RLS RA + L+ Sbjct: 1 ADLTDRARQIISEAAQNSGRVQTTRIEVAGHADR---AGSPQYNQRLSQRRADAVAAELV 57 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + GV+ I + F R + + NRR++I++ Sbjct: 58 RLGVARSAI-SVQAFGESRPLVPTADGVREPQNRRVEIVL 96 >gi|90411166|ref|ZP_01219179.1| putative outer membrane protein [Photobacterium profundum 3TCK] gi|90328012|gb|EAS44333.1| putative outer membrane protein [Photobacterium profundum 3TCK] Length = 196 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLS 288 + +F S+ + +Q++ + L E I ++G+ ASP N N LS Sbjct: 70 ENDVRVLFANDSTAIPEAFLSEIQRMADFLDVYPEAYIELKGY--ASPVGNSEY-NIGLS 126 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334 RA + L+ GV+ RI I GF A S+ N+ +RR+ Sbjct: 127 KRRATKVREQLIAEGVAPQRIKTI-GFGDAEPIAAESSEATNTLSRRV 173 >gi|66045711|ref|YP_235552.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] gi|63256418|gb|AAY37514.1| OmpA/MotB [Pseudomonas syringae pv. syringae B728a] Length = 447 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ + L +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVADYLKSSDKLDRHVTLVGFGDAKSDPERAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+K GV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKRGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|297184084|gb|ADI20203.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 863 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + S E+ V L + +L + + I +R HTD +R+ N LS RA S Sbjct: 599 FFDLAQSELREESKVALDTVFSILQRNPTITIGLRSHTD---YRDTDAKNDVLSQARAQS 655 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKI 322 L++ G++ +R++ + G + Sbjct: 656 CVDYLIQKGITAERLTAV-GMGEKEPFV 682 >gi|332519351|ref|ZP_08395818.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045199|gb|EGI81392.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 636 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 24/291 (8%) Query: 68 YFNPFGKNLMTASKGI----FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 YF+ G + D + P R+ ++ + D+ + + G + ++ Sbjct: 347 YFSSIGHLGLGGMDVFYTKEIDGKMAPVRNVGIPVNSNGDDFAFHINEETGEGFVSSNRE 406 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE----ENYFLPPLS 179 + +++I+ + Q T K K +K Sbjct: 407 GGKGDDDIYQIKKIQPLCDVLIVATIVDNKTKAPIAGASASLVDSKGNVLSTKTTNAEGK 466 Query: 180 KEKILAMKRKKRLQDLAKKISS---TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 E I+ LQ + S ++G + + + + +I + + P+ Sbjct: 467 VEYIVECDTDTELQVTMQDYESNKLAIAGDDVEEVAVELALDPIEK--IIEVEEVVLRPI 524 Query: 237 -FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S + L + +V+ + VI HTD R + N LS RA + Sbjct: 525 YFDYDKSNITAKAAFELDNLVQVMNKYPDMVIYATSHTD---IRASNKYNDALSDRRAKT 581 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340 Q ++ G+ RIS +G L + ++ + NRR + + Sbjct: 582 TVQYIISKGIDATRISG-AGKGERELAVDCGTNCTEEQHQLNRRSEFKILS 631 >gi|332520148|ref|ZP_08396612.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044707|gb|EGI80901.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 636 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 24/291 (8%) Query: 68 YFNPFGKNLMTASKGI----FDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQ 123 YF+ G + D + P R+ ++ + D+ + + G + ++ Sbjct: 347 YFSSIGHLGLGGMDVFYTKEIDGKMAPVRNVGIPVNSNGDDFAFHINEETGEGFVSSNRE 406 Query: 124 YQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKE----ENYFLPPLS 179 + +++I+ + Q T K K +K Sbjct: 407 GGKGDDDIYQIKKIQPLCDVLIVATIVDNKTKAPIAGASASLVDSKGNVLSTKTTNAEGK 466 Query: 180 KEKILAMKRKKRLQDLAKKISS---TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPM 236 E I+ LQ + S ++G + + + + +I + + P+ Sbjct: 467 VEYIVECDTDTELQVTMQDYESNKLAIAGDDVEEVAVELALDPIEK--IIEVEEVVLRPI 524 Query: 237 -FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S + L + +V+ + VI HTD R + N LS RA + Sbjct: 525 YFDYDKSNITAKAAFELDNLVQVMNKYPDMVIYATSHTD---IRASNKYNDALSDRRAKT 581 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIA-----SDPMNSANRRIDILVED 340 Q ++ G+ RIS +G L + ++ + NRR + + Sbjct: 582 TVQYIISKGIDATRISG-AGKGERELAVDCGTNCTEEQHQLNRRSEFKILS 631 >gi|194290406|ref|YP_002006313.1| colicin transport component, peptidoglycan-associated outer membrane lipoprotein [Cupriavidus taiwanensis LMG 19424] gi|193224241|emb|CAQ70250.1| colicin transport component, peptidoglycan-associated outer membrane lipoprotein [Cupriavidus taiwanensis LMG 19424] Length = 169 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ +L + L + I I+G+TD R + N L RA + Sbjct: 69 FDFDSYTVKPDYQGMLGAHAKYLGTNQGRKILIQGNTDE---RGTSEYNLALGQKRAEAV 125 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 + L GV + ++ +S G + + + NRR DI Sbjct: 126 RRSLASMGVPDSQMEAVSLGKEKPKATGHDEASWAENRRADI 167 >gi|197106554|ref|YP_002131931.1| OmpA family protein [Phenylobacterium zucineum HLK1] gi|196479974|gb|ACG79502.1| OmpA family protein [Phenylobacterium zucineum HLK1] Length = 186 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 9/115 (7%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + FD + +L E L + I G+ D R N L R Sbjct: 76 DRVYFDLDQHDVRTDARPLLDAQAEWLRRYPQVRVRIEGNADE---RGTREYNLALGARR 132 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANR--RIDILVEDRQ 342 A S L+ GV+ DRIS IS F + + NR R I+ RQ Sbjct: 133 ANSVRDYLVNRGVTSDRISTIS-FGKEQPLDPGTTEEAYQKNRNARTAIVSGARQ 186 >gi|126641083|ref|YP_001084067.1| putative antigen [Acinetobacter baumannii ATCC 17978] Length = 174 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%) Query: 228 IIDQRNTPMF--DKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARD 283 I D+ + +F D+ + + E + KI E + S I + G TD P + Sbjct: 56 IADRIASVLFAFDRFDASAIEEGTNSVVKIAEQIKKSPTITPIIVSGFTD--PLGKFSY- 112 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK---IASDPM-----NSANRRID 335 N LS RA + ++L++ GV RI +I + + +++ + NRR++ Sbjct: 113 NQELSSKRANTVAKLLVQQGVDASRI-QIQANSQTDIYKQCSSNNSSQLIQCLAPNRRVN 171 Query: 336 I 336 I Sbjct: 172 I 172 >gi|84514866|ref|ZP_01002229.1| OmpA domain protein [Loktanella vestfoldensis SKA53] gi|84511025|gb|EAQ07479.1| OmpA domain protein [Loktanella vestfoldensis SKA53] Length = 531 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 17/138 (12%) Query: 217 FETTRTGIL--ISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLA--HSTEV-IS 267 E T + ++ + F SS + ++ ++A + + Sbjct: 391 VEVTLRQLRDMTQLLTAADRSSITFRFALGSSRLDARAQDDILRLANLIATSDISNKELL 450 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL--MKSGVSEDRI-SKISGFAHHRLKIAS 324 + G+TDA N LS RA Q L + ++ D + + GF + Sbjct: 451 LIGYTDAI---GDGASNLALSQQRAEEVRQALFAVAPSLASDDLPVRALGFGEISPLSCN 507 Query: 325 DPMNSA--NRRIDILVED 340 + N NRR+++ + D Sbjct: 508 ETANGRRINRRVEVWLRD 525 >gi|28869933|ref|NP_792552.1| OmpA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853178|gb|AAO56247.1| OmpA family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 451 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 350 FAQGSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 404 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 405 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 451 >gi|330965346|gb|EGH65606.1| OmpA family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 451 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 350 FAQGSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 404 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 405 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 451 >gi|301162664|emb|CBW22211.1| putative outer membrane protein [Bacteroides fragilis 638R] Length = 366 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L ++S S L + T+ + + F Sbjct: 214 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 273 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + I G+ D + A+ N +LS RA + Y Sbjct: 274 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 331 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ + GF + +N R+ IL Sbjct: 332 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 365 >gi|265763060|ref|ZP_06091628.1| outer membrane porin F [Bacteroides sp. 2_1_16] gi|263255668|gb|EEZ27014.1| outer membrane porin F [Bacteroides sp. 2_1_16] Length = 373 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L ++S S L + T+ + + F Sbjct: 221 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 280 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + I G+ D + A+ N +LS RA + Y Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 338 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ + GF + +N R+ IL Sbjct: 339 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 372 >gi|253563059|ref|ZP_04840516.1| outer membrane porin F [Bacteroides sp. 3_2_5] gi|251946835|gb|EES87117.1| outer membrane porin F [Bacteroides sp. 3_2_5] Length = 373 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L ++S S L + T+ + + F Sbjct: 221 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 280 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + I G+ D + A+ N +LS RA + Y Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 338 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ + GF + +N R+ IL Sbjct: 339 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 372 >gi|53712963|ref|YP_098955.1| outer membrane porin F [Bacteroides fragilis YCH46] gi|52215828|dbj|BAD48421.1| outer membrane porin F precursor [Bacteroides fragilis YCH46] Length = 373 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L ++S S L + T+ + + F Sbjct: 221 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 280 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + I G+ D + A+ N +LS RA + Y Sbjct: 281 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 338 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ + GF + +N R+ IL Sbjct: 339 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 372 >gi|323436025|ref|ZP_01049805.2| peptidoglycan-associated lipoprotein [Dokdonia donghaensis MED134] gi|321496340|gb|EAQ39777.2| peptidoglycan-associated lipoprotein [Dokdonia donghaensis MED134] Length = 306 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 + ++S + L I L I++ GHTD+ N RL L+RA Sbjct: 205 YSEASVNLNAQQRKKLGNITRYLDKVEGSSITVEGHTDSQ---GSMATNDRLGLERAEFG 261 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILV 338 Q L +G++ +I ++ +D NRR I + Sbjct: 262 KQYLQNNGIAGAKIKTVT-KGERNPIATNDTEEGRTQNRRAVITI 305 Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%) Query: 242 SIPLPETIVVLQKIGEV-----LAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +I P V I ++ + ++I G+ D+ N A N L L RA + Sbjct: 76 AIITPVAGDVNNGIAKLKGYFDAEGNDNKMVNITGYYDSDEVNNSAYAN--LGLARATAV 133 Query: 296 YQVLMKSGVSEDRI 309 + G+S RI Sbjct: 134 KNYFVDQGISSSRI 147 >gi|260574834|ref|ZP_05842836.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] gi|259022839|gb|EEW26133.1| OmpA/MotB domain protein [Rhodobacter sp. SW2] Length = 190 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 10/104 (9%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F S+ L + + +I GHTD+ R N RLS RA S Sbjct: 91 LFATDSATLTAHGRSFLTQFFQQAGAFGY--AIYGHTDS---RASDEYNMRLSQRRAASV 145 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 + G + + GF + ++ + NRR++++ Sbjct: 146 ANIARSVGAV---VEREIGFGERQPIASNGSASGMQQNRRVEVV 186 >gi|171463937|ref|YP_001798050.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193475|gb|ACB44436.1| OmpA/MotB domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 188 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR-GHTDASPFRNIARDNWRLSLDRAYS 294 ++D + S PE L KI L + I G+TD+ N L RA S Sbjct: 81 LYDFNKSDLKPEGKATLDKIAADLKKIKLEVIITVGNTDSV---GTDAYNMALGQRRAQS 137 Query: 295 AYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338 L+ V RI + G ++ A+ + NRR DI V Sbjct: 138 VKTYLVSKDVDGSRIYTESKGKSNPVASNATAEGRAKNRRTDIEV 182 >gi|121600552|ref|YP_992694.1| ompA family protein [Burkholderia mallei SAVP1] gi|124384797|ref|YP_001026510.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126450730|ref|YP_001080211.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|167002004|ref|ZP_02267794.1| OmpA family protein [Burkholderia mallei PRL-20] gi|238562245|ref|ZP_00440713.2| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|254177630|ref|ZP_04884285.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|254199515|ref|ZP_04905881.1| OmpA family protein [Burkholderia mallei FMH] gi|254205830|ref|ZP_04912182.1| OmpA family protein [Burkholderia mallei JHU] gi|254358770|ref|ZP_04975043.1| OmpA family protein [Burkholderia mallei 2002721280] gi|121229362|gb|ABM51880.1| ompA family protein [Burkholderia mallei SAVP1] gi|124292817|gb|ABN02086.1| ompA family protein [Burkholderia mallei NCTC 10229] gi|126243600|gb|ABO06693.1| ompA family protein [Burkholderia mallei NCTC 10247] gi|147749111|gb|EDK56185.1| OmpA family protein [Burkholderia mallei FMH] gi|147753273|gb|EDK60338.1| OmpA family protein [Burkholderia mallei JHU] gi|148027897|gb|EDK85918.1| OmpA family protein [Burkholderia mallei 2002721280] gi|160698669|gb|EDP88639.1| ompA family protein [Burkholderia mallei ATCC 10399] gi|238522977|gb|EEP86418.1| OmpA family protein [Burkholderia mallei GB8 horse 4] gi|243062249|gb|EES44435.1| OmpA family protein [Burkholderia mallei PRL-20] Length = 236 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 MF ++ + L ++ + L + +SI G+TD N +LS R Sbjct: 120 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 176 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337 A + L+ +GV D + G + D A NRR++++ Sbjct: 177 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLSPNRRVEVV 229 >gi|307302740|ref|ZP_07582496.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] gi|306903104|gb|EFN33695.1| OmpA/MotB domain protein [Sinorhizobium meliloti BL225C] Length = 633 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V + + +VL I GHTDA + N LS +R Sbjct: 519 FATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 575 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + G+ + + G+ LKI +D NRR+ I Sbjct: 576 AESVAVLLTEVYGIPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 620 >gi|301062462|ref|ZP_07203113.1| putative peptidoglycan-associated lipoprotein [delta proteobacterium NaphS2] gi|300443436|gb|EFK07550.1| putative peptidoglycan-associated lipoprotein [delta proteobacterium NaphS2] Length = 103 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE +L+ + L A+ + + I G+ D R N L RA SA Sbjct: 1 FDFDRSNLKPEAQEILRDKADFLRANRSYSVLIAGNCDD---RGTEEYNLALGERRAMSA 57 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMN-SANRR 333 + L+ G+S DRI IS + R ++P+ + NRR Sbjct: 58 KKFLVALGISPDRIKTIS-YGELRPADPANNPVAWALNRR 96 >gi|262274549|ref|ZP_06052360.1| sodium-type flagellar protein MotY precursor [Grimontia hollisae CIP 101886] gi|262221112|gb|EEY72426.1| sodium-type flagellar protein MotY precursor [Grimontia hollisae CIP 101886] Length = 292 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +D++ + ++ L +I E + +S ++ + + +TD R N RLS RA Sbjct: 186 YDENGAELNKASMARLAQIAEFVRYSPDIDLVLMATYTDN---RGAKVANQRLSEIRAQK 242 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 M G+ +DRI ++ + R ++ + NRR+ I + Sbjct: 243 LEAYFMSLGLPKDRI-QVEAYGERRPIAENESPIGRNKNRRVVISL 287 >gi|29346911|ref|NP_810414.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron VPI-5482] gi|29338809|gb|AAO76608.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron VPI-5482] Length = 363 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284 + I + F +S+ + + + E L ++T +S+ G+ D AR N Sbjct: 255 VVIEPLKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKG--TGNARIN 312 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +LS RA + + L G++ DRI+ ++ + R+ I + Sbjct: 313 SKLSEKRANNVVEALKAKGIAADRIT-VAYKGDTVQPYNT----PEENRVSICI 361 >gi|332162167|ref|YP_004298744.1| outer membrane protein A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606220|emb|CBY27718.1| outer membrane protein A precursor [Yersinia enterocolitica subsp. palearctica Y11] gi|325666397|gb|ADZ43041.1| outer membrane protein A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 357 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 229 KSDVLFAFNKSTLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+I+ G + P + +RR++I Sbjct: 286 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 344 Query: 338 VE 339 V+ Sbjct: 345 VK 346 >gi|261415252|ref|YP_003248935.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371708|gb|ACX74453.1| OmpA/MotB domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325746|gb|ADL24947.1| OmpA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 654 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA--SPFRNIARDNWRLSLDRAY 293 F S E+ L ++ L + I I HTD P R+ L+L RA Sbjct: 483 FGVGQSKFTRESSDGLNRLAAHLRNYNGKTIEIVSHTDNLDRPERSRV-----LALKRAE 537 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 L+ +G+S I +G + + N RI++ V Sbjct: 538 EVKSYLVMAGLSGQDIIA-TGKGGDEPLVPNTTPDNRMKNNRIEVFV 583 >gi|148284999|ref|YP_001249089.1| peptidoglycan-associated lipoprotein precursor [Orientia tsutsugamushi str. Boryong] gi|146740438|emb|CAM80934.1| peptidoglycan-associated lipoprotein precursor [Orientia tsutsugamushi str. Boryong] Length = 202 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 11/158 (6%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 + + ++ I++ S V N + + + + I +++ F Sbjct: 44 EDNDDIAEIVSSINAESSDQVTSNNAQQEGYVDVKHEQFLQAIHRKHKVYFATEKFDLSE 103 Query: 247 ETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 E+ VL+ + L ++ I I GH D R N L RA S Q L+ GVS Sbjct: 104 ESKRVLRAQSDWLKNNPDVKIIIEGHCDE---RGTREYNLALGKKRADSVKQFLVTLGVS 160 Query: 306 EDRISKISGFAHHRL-----KIASDPMNSANRR-IDIL 337 D+I + + + K D NRR + I+ Sbjct: 161 RDKIE-TTSYGKDKPEVEVTKDNKDEAYRLNRRSVTII 197 >gi|86148944|ref|ZP_01067176.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597451|ref|ZP_01100686.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218561995|ref|YP_002343774.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840302|gb|EAQ57559.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190512|gb|EAQ94486.1| chemotaxis protein MotB, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112359701|emb|CAL34487.1| putative flagellar motor protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925608|gb|ADC27960.1| flagellar motor protein MotB [Campylobacter jejuni subsp. jejuni IA3902] gi|315927861|gb|EFV07186.1| ompA family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928678|gb|EFV07961.1| ompA family protein [Campylobacter jejuni subsp. jejuni 305] Length = 247 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 32/190 (16%) Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 ++ K+ K+ + K KEE+ L L + + + KRLQ + + VA Sbjct: 60 STQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDNQ----VAL 115 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVI 266 N+ V F++ S+ + L+++ E+ + I Sbjct: 116 NLPSKVE--------------------FERGSAQIVSADIQDYLKRMAELTTYLPPQAKI 155 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP 326 IRG+TD S + L+ RA + + ++ G + I I + + +P Sbjct: 156 EIRGYTDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NP 210 Query: 327 MNSANRRIDI 336 N R++I Sbjct: 211 QTLENNRVEI 220 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEF------- 52 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 IFD + ++K + S +LK Q + ++ L Sbjct: 53 ----VKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQ 108 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEEN--YFLPPLSKEKI 183 S + E+G S D++ + + +LPP +K +I Sbjct: 109 SDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEI 157 >gi|209520168|ref|ZP_03268940.1| OmpA/MotB domain protein [Burkholderia sp. H160] gi|209499375|gb|EDZ99458.1| OmpA/MotB domain protein [Burkholderia sp. H160] Length = 116 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+I L + V ++I G+TD++ R N +LS RA S Sbjct: 9 FATDSAILSSAAKASLDQFLRVNEGINFRRVTIIGYTDSTGSRGH---NQKLSEARAQSV 65 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLK-IASDPMNSANRRIDILV 338 + L G+ A + A+ + NRR+++ V Sbjct: 66 LRYLRDHGLIAQSFVAEGAAADDPVASNATAEGRALNRRVEVRV 109 >gi|71734119|ref|YP_274824.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554672|gb|AAZ33883.1| OmpA family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 447 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|330985312|gb|EGH83415.1| OmpA family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 447 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|85714376|ref|ZP_01045364.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85698823|gb|EAQ36692.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 154 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLD 290 + F+ + P+ I L+K L + +I GH D R N L Sbjct: 46 DRVFFESDQTSLSPQAITTLEKQARWL-QTYNRYSFTIEGHADE---RGTREYNIALGAR 101 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 RA + L G+ R+ IS + R + ++ S NRR Sbjct: 102 RAQTVRSFLASRGIDPGRMRTIS-YGKERPVAVCNDISCWSQNRR 145 >gi|325205456|gb|ADZ00909.1| ompA family protein [Neisseria meningitidis M04-240196] Length = 244 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + L+ + + + GHTD F + N LS RAY Sbjct: 106 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSDKYNQALSERRAYV 162 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV RIS + G + Sbjct: 163 VANNLVSNGVPVSRISAV-GLGESQ 186 >gi|92113977|ref|YP_573905.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] gi|91797067|gb|ABE59206.1| OmpA/MotB [Chromohalobacter salexigens DSM 3043] Length = 177 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 7/101 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F PE VL E L + + GH D R N L RA + Sbjct: 77 FAFDRDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADE---RGTREYNLGLGERRARAV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRI 334 Q L GVS +I +S + R + + + NRR+ Sbjct: 134 EQYLTVEGVSASQIEIVS-YGEERPAVRGHDEESYAQNRRV 173 >gi|325278790|ref|YP_004251332.1| OmpA/MotB domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324310599|gb|ADY31152.1| OmpA/MotB domain protein [Odoribacter splanchnicus DSM 20712] Length = 366 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 8/104 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S++ PE + ++ L + +++ G+ D R N LS RA + Sbjct: 263 FFKINSAVIRPEEAGKVDELAAYLQKNPAAQVTLTGYADVQ--TGNHRLNKTLSARRAQA 320 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 L G++ DRI+ S A+ R+ I + Sbjct: 321 VADALTAKGIAADRITADS-QGDTVQPFAT----PEENRVTICI 359 >gi|312270773|gb|ADQ55787.1| OmpA [Haemophilus parasuis] gi|312270775|gb|ADQ55788.1| OmpA [Haemophilus parasuis] Length = 371 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 251 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 307 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 308 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 366 Query: 342 Q 342 + Sbjct: 367 K 367 >gi|312270751|gb|ADQ55776.1| OmpA [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|312270745|gb|ADQ55773.1| OmpA [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|312270741|gb|ADQ55771.1| OmpA [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|312270727|gb|ADQ55764.1| OmpA [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|312270725|gb|ADQ55763.1| OmpA [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|307720703|ref|YP_003891843.1| OmpA/MotB domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978796|gb|ADN08831.1| OmpA/MotB domain protein [Sulfurimonas autotrophica DSM 16294] Length = 180 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 10/166 (6%) Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 +KE + K ++ + +++ + + VA + +T + +I + T FD Sbjct: 21 TKEPAVQKKTEEVASPVVQEVEAVTTETVASENS--TINSSTNELSMNAIESKLPTIYFD 78 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTEVISI--RGHTDASPFRNIARDNWRLSLDRAYSAY 296 PE + E+ + S+ G+ D N+ L L RA + Sbjct: 79 FDKYNIKPEMQERIDAAAELGKTGAKAFSVKLEGNCDEW---GSDEYNFALGLKRANAVK 135 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 + L+ G+ RIS +S + + NRR++ + Sbjct: 136 KALVADGIDPSRISMVS-YGESNPVCTEHTRACWAKNRRVNFKLLP 180 >gi|299773291|gb|ADJ38720.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|299773285|gb|ADJ38717.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKAIITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773283|gb|ADJ38716.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773281|gb|ADJ38715.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKAIITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773277|gb|ADJ38713.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773263|gb|ADJ38706.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773261|gb|ADJ38705.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773267|gb|ADJ38708.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773257|gb|ADJ38703.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|299773255|gb|ADJ38702.1| outer membrane protein P5 [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKAIITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|299773251|gb|ADJ38700.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|281357860|ref|ZP_06244346.1| OmpA/MotB domain protein [Victivallis vadensis ATCC BAA-548] gi|281315807|gb|EFA99834.1| OmpA/MotB domain protein [Victivallis vadensis ATCC BAA-548] Length = 216 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + +P L +I ++ E + + GH D R N L RA + Sbjct: 110 FAYDSDVLVPSETANLDRIAAYMSDKPELGLLVEGHCDQ---RGTEEYNRALGERRANAI 166 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333 L G+++ R+ IS + + + + + NRR Sbjct: 167 RAYLAGKGLADTRMKTIS-YGEDKPAVEGNNEEAWRQNRR 205 >gi|209968962|gb|ACJ02842.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|209968954|gb|ACJ02838.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|237746664|ref|ZP_04577144.1| peptidoglycan-associated lipoprotein [Oxalobacter formigenes HOxBLS] gi|229378015|gb|EEO28106.1| peptidoglycan-associated lipoprotein [Oxalobacter formigenes HOxBLS] Length = 167 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLD 290 + + FD S + E V+ L + I+G+TD R + N L Sbjct: 61 QKSVYFDFDSYVVKGEYQPVVDAHARYLNGHRNRTVVIQGNTDE---RGGSEYNLALGQK 117 Query: 291 RAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 RA + + + GV + ++ +S G R ++ + NRR DI+ Sbjct: 118 RAEAVRKAMALMGVPDSQMEAVSFGKEKPRATGNNEAAWAENRRADIV 165 >gi|224714311|gb|ACN62150.1| outer membrane protein A [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|224714275|gb|ACN62132.1| outer membrane protein A [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|209968936|gb|ACJ02829.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968942|gb|ACJ02832.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968946|gb|ACJ02834.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968956|gb|ACJ02839.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968958|gb|ACJ02840.1| outer membrane protein P5 [Haemophilus parasuis] gi|224714295|gb|ACN62142.1| outer membrane protein A [Haemophilus parasuis] gi|312270743|gb|ADQ55772.1| OmpA [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|209968926|gb|ACJ02824.1| outer membrane protein P5 [Haemophilus parasuis] gi|224714285|gb|ACN62137.1| outer membrane protein A [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|209968908|gb|ACJ02815.1| outer membrane protein P5 [Haemophilus parasuis] gi|224714283|gb|ACN62136.1| outer membrane protein A [Haemophilus parasuis] Length = 369 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L E++ + + G+TD N LS RA Sbjct: 249 LFDFGKANLKPAAAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 305 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 306 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 364 Query: 342 Q 342 + Sbjct: 365 K 365 >gi|209968902|gb|ACJ02812.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968930|gb|ACJ02826.1| outer membrane protein P5 [Haemophilus parasuis] gi|224714289|gb|ACN62139.1| outer membrane protein A [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|209968934|gb|ACJ02828.1| outer membrane protein P5 [Haemophilus parasuis] gi|222831779|gb|ACJ23249.2| OmpA [Haemophilus parasuis] gi|224714293|gb|ACN62141.1| outer membrane protein A [Haemophilus parasuis] gi|224714317|gb|ACN62153.1| outer membrane protein A [Haemophilus parasuis] gi|224714319|gb|ACN62154.1| outer membrane protein A [Haemophilus parasuis] gi|224714321|gb|ACN62155.1| outer membrane protein A [Haemophilus parasuis] gi|224714335|gb|ACN62162.1| outer membrane protein A [Haemophilus parasuis] gi|299773259|gb|ADJ38704.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773265|gb|ADJ38707.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773271|gb|ADJ38710.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773273|gb|ADJ38711.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773275|gb|ADJ38712.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773279|gb|ADJ38714.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773287|gb|ADJ38718.1| outer membrane protein P5 [Haemophilus parasuis] gi|312270747|gb|ADQ55774.1| OmpA [Haemophilus parasuis] gi|312270749|gb|ADQ55775.1| OmpA [Haemophilus parasuis] gi|312270753|gb|ADQ55777.1| OmpA [Haemophilus parasuis] gi|312270755|gb|ADQ55778.1| OmpA [Haemophilus parasuis] gi|312270757|gb|ADQ55779.1| OmpA [Haemophilus parasuis] gi|312270759|gb|ADQ55780.1| OmpA [Haemophilus parasuis] gi|312270761|gb|ADQ55781.1| OmpA [Haemophilus parasuis] gi|312270763|gb|ADQ55782.1| OmpA [Haemophilus parasuis] gi|312270765|gb|ADQ55783.1| OmpA [Haemophilus parasuis] gi|312270767|gb|ADQ55784.1| OmpA [Haemophilus parasuis] gi|312270769|gb|ADQ55785.1| OmpA [Haemophilus parasuis] gi|312270771|gb|ADQ55786.1| OmpA [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|167856409|ref|ZP_02479133.1| outer membrane protein P5 precursor [Haemophilus parasuis 29755] gi|167852469|gb|EDS23759.1| outer membrane protein P5 precursor [Haemophilus parasuis 29755] gi|209968896|gb|ACJ02809.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968900|gb|ACJ02811.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968904|gb|ACJ02813.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968916|gb|ACJ02819.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968932|gb|ACJ02827.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968960|gb|ACJ02841.1| outer membrane protein P5 [Haemophilus parasuis] gi|209968964|gb|ACJ02843.1| outer membrane protein P5 [Haemophilus parasuis] gi|222831781|gb|ACJ23250.2| OmpA [Haemophilus parasuis] gi|224714297|gb|ACN62143.1| outer membrane protein A [Haemophilus parasuis] gi|224714299|gb|ACN62144.1| outer membrane protein A [Haemophilus parasuis] gi|224714301|gb|ACN62145.1| outer membrane protein A [Haemophilus parasuis] gi|224714309|gb|ACN62149.1| outer membrane protein A [Haemophilus parasuis] gi|224714313|gb|ACN62151.1| outer membrane protein A [Haemophilus parasuis] gi|224714315|gb|ACN62152.1| outer membrane protein A [Haemophilus parasuis] gi|224714323|gb|ACN62156.1| outer membrane protein A [Haemophilus parasuis] gi|224714325|gb|ACN62157.1| outer membrane protein A [Haemophilus parasuis] gi|224714327|gb|ACN62158.1| outer membrane protein A [Haemophilus parasuis] gi|224714329|gb|ACN62159.1| outer membrane protein A [Haemophilus parasuis] gi|224714331|gb|ACN62160.1| outer membrane protein A [Haemophilus parasuis] gi|224714333|gb|ACN62161.1| outer membrane protein A [Haemophilus parasuis] gi|299773239|gb|ADJ38694.1| outer membrane protein P5 [Haemophilus parasuis] gi|299773269|gb|ADJ38709.1| outer membrane protein P5 [Haemophilus parasuis] gi|312270735|gb|ADQ55768.1| OmpA [Haemophilus parasuis] gi|312270737|gb|ADQ55769.1| OmpA [Haemophilus parasuis] gi|312270739|gb|ADQ55770.1| OmpA [Haemophilus parasuis] Length = 367 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 247 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 303 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 304 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 362 Query: 342 Q 342 + Sbjct: 363 K 363 >gi|221068061|ref|ZP_03544166.1| peptidoglycan-associated lipoprotein [Comamonas testosteroni KF-1] gi|220713084|gb|EED68452.1| peptidoglycan-associated lipoprotein [Comamonas testosteroni KF-1] Length = 175 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + ++ + + + + + GHTD R N L RA + Sbjct: 74 FDFDSYSVKADAQPQIEAHAKFIKANPAAKVQLEGHTDE---RGGREYNLALGQKRAEAV 130 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 + L GV++ ++ +S + + + + NRR++I Sbjct: 131 RRSLGLLGVNDAQVEAVS-YGKEKPAAEGHGEDAYAQNRRVEI 172 >gi|109675220|gb|ABG37059.1| outer membrane protein A [Acinetobacter baumannii] Length = 282 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 218 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 274 Query: 293 YSAYQVLM 300 S L+ Sbjct: 275 NSVKSALV 282 >gi|22126613|ref|NP_670036.1| outer membrane protein A [Yersinia pestis KIM 10] gi|45441153|ref|NP_992692.1| outer membrane protein A [Yersinia pestis biovar Microtus str. 91001] gi|21959622|gb|AAM86287.1|AE013876_5 outer membrane porin A [Yersinia pestis KIM 10] gi|45436013|gb|AAS61569.1| putative outer membrane porin A protein [Yersinia pestis biovar Microtus str. 91001] Length = 363 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%) Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279 I+D + + +F + + PE L ++ L+ + + G D Sbjct: 226 IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 282 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330 N LS RA S L+ G+ D+I+ G + P + Sbjct: 283 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 341 Query: 331 --NRRIDILVE 339 +RR++I V+ Sbjct: 342 APDRRVEIEVK 352 >gi|238795889|ref|ZP_04639402.1| Outer membrane protein A [Yersinia mollaretii ATCC 43969] gi|238720352|gb|EEQ12155.1| Outer membrane protein A [Yersinia mollaretii ATCC 43969] Length = 350 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 222 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+I+ G + P + +RR++I Sbjct: 279 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|123441891|ref|YP_001005874.1| outer membrane protein A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088852|emb|CAL11658.1| putative outer membrane porin A protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 357 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 229 KSDVLFAFNKSTLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+I+ G + P + +RR++I Sbjct: 286 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 344 Query: 338 VE 339 V+ Sbjct: 345 VK 346 >gi|320324614|gb|EFW80691.1| OmpA family protein [Pseudomonas syringae pv. glycinea str. B076] Length = 447 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|315182421|gb|ADT89334.1| outer membrane protein OmpA [Vibrio furnissii NCTC 11218] Length = 316 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + GH D + N+ LSL RA + +L++ GV ++I I + Sbjct: 243 KVLLVGHADNQ---GSNQYNYALSLRRAVTISNILVELGVDPEQIV-IEARGDSEPIANN 298 Query: 325 D--PMNSANRRIDILV 338 NRR+++++ Sbjct: 299 AILEQRKKNRRVEMIL 314 >gi|288225943|gb|ADC44456.1| OmpA [Enterobacter sp. i1] Length = 111 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G+TD + A N LS Sbjct: 23 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD--RIGSDAY-NQGLS 79 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 RA S L+ G+ D+IS G Sbjct: 80 ERRAQSVVDYLISKGIPADKISA-RGMGESNPV 111 >gi|260769571|ref|ZP_05878504.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972] gi|260614909|gb|EEX40095.1| outer membrane protein A precursor [Vibrio furnissii CIP 102972] Length = 316 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + + GH D + N+ LSL RA + +L++ GV ++I I + Sbjct: 243 KVLLVGHADNQ---GSNQYNYALSLRRAVTISNILVELGVDPEQIV-IEARGDSEPIANN 298 Query: 325 D--PMNSANRRIDILV 338 NRR+++++ Sbjct: 299 AILEQRKKNRRVEMIL 314 >gi|197117521|ref|YP_002137948.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] gi|197086881|gb|ACH38152.1| OmpA family outer membrane lipoprotein [Geobacter bemidjiensis Bem] Length = 450 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 48/297 (16%), Positives = 85/297 (28%), Gaps = 31/297 (10%) Query: 63 KAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKK 122 + F K ++ P + + S+ K+ I K Sbjct: 164 AGVSFVFGGEKKQPRHRARPQIAAATPMTNPAATEASTSLSTQTAKDQP--VITHRETPK 221 Query: 123 QYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEK 182 + Q + + + ++ +P + Sbjct: 222 PVPASPAPATVATTPQSLAVPVIATPGIASSASSVQPPPVAATVATTPQSLAVPVIVTPG 281 Query: 183 ILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN--------- 233 I + + +A +I+ T A + E T I + ++ Sbjct: 282 IASSASSVQPPPVAAEIAKT-----APAPRENDSTEATDQAKQIELEAEKKPASTPSVPV 336 Query: 234 -TPM------FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNW 285 P+ FD +S P I V +KIG + + ++I+ I GH D N Sbjct: 337 AAPLLKATFEFDCNSYKIRPSFIDVGRKIGLFMKRNPQIIAQIHGHAD---ITGSDDHNL 393 Query: 286 RLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 LS RA Q LMK +S DR I + NRR +++ Sbjct: 394 ALSEKRAVRTKQYLMKMYNLSADRFE-IRTMGSSEPIADNTTEVGRKKNRRALVIIL 449 >gi|91974956|ref|YP_567615.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] gi|91681412|gb|ABE37714.1| OmpA/MotB [Rhodopseudomonas palustris BisB5] Length = 697 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-----ISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S P+ LQ I + L S I GHTDA+ DN LS R Sbjct: 571 FELGSWDISPDQASKLQAIADGLNRSISRNPREVFLIEGHTDAT---GNDTDNLSLSDRR 627 Query: 292 AYSAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A SA +L + V + ++ G+ LK+ SD NRR+ + Sbjct: 628 AESAAALLTQQFAVPAENLTS-QGYGEQYLKVQSDGPERQNRRVTV 672 >gi|88801593|ref|ZP_01117121.1| OmpA family protein [Polaribacter irgensii 23-P] gi|88782251|gb|EAR13428.1| OmpA family protein [Polaribacter irgensii 23-P] Length = 651 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 18/128 (14%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRG-HTDASPFRNIARDNW 285 +I + NT FD + E + L KI ++ ++I HTDA + N Sbjct: 510 ELIIKINTIYFDSNKWNIRSEAAIELDKIVSIMTKYPKIIVASASHTDA---KGNRAYNK 566 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMNSA----------NR 332 LS RA SA ++ G+S +RI GF L +D ++ NR Sbjct: 567 ILSQRRAKSAVDYIIYKGISPERIYG-KGFGEDELTNKCVDNDAHSNRVKCSKLQHQENR 625 Query: 333 RIDILVED 340 R LV + Sbjct: 626 RTSFLVLN 633 >gi|330890787|gb|EGH23448.1| OmpA family protein [Pseudomonas syringae pv. mori str. 301020] Length = 447 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKTSDKLNQHVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELLKSGVT---FRDIVGLGDEMPVATNEIDDGRIKNRRVEVWVQ 447 >gi|315453876|ref|YP_004074146.1| peptidoglycan-associated lipoprotein [Helicobacter felis ATCC 49179] gi|315132928|emb|CBY83556.1| peptidoglycan-associated lipoprotein [Helicobacter felis ATCC 49179] Length = 227 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 73/215 (33%), Gaps = 13/215 (6%) Query: 127 LENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAM 186 + QS S K + E + K + P+S+ K Sbjct: 21 SKGAKPSKPPKSQSAENVQEQPTQSVKNTTVHPEGVQESTPAKSQTPQTSPISQTKEGQP 80 Query: 187 KRKKRLQ-DLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 L+ A+K ++ S V E ++G ++ FD Sbjct: 81 GTAHELETQNAQKNANATSETVPAPQEPQSEQEQFKSGEIV------GQVYFDFDKYNVR 134 Query: 246 PETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVS 305 P+ + + + + S + + G+TD F N+ L RA S + L+ G++ Sbjct: 135 PDMQDAVDQGAQKIQDSKMKVLLEGNTDE--FGTGEY-NFALGNKRALSVKEALVVKGIA 191 Query: 306 EDRISKISGFAHHRL--KIASDPMNSANRRIDILV 338 +D I IS F + + NRR+DI V Sbjct: 192 QDNIRTIS-FGESKPICLEKTKECYQKNRRVDIKV 225 >gi|262277489|ref|ZP_06055282.1| OmpA family protein [alpha proteobacterium HIMB114] gi|262224592|gb|EEY75051.1| OmpA family protein [alpha proteobacterium HIMB114] Length = 155 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F + S + L K + S + + GH D R N L R Sbjct: 49 PDRVFFATNKSGLHTASKSTLNKQAAYIKSSGISVVVEGHADE---RGTREYNLALGERR 105 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 A + LM GVS ++ IS + R + NRR + V+ + Sbjct: 106 ANAVRDYLMSQGVSGSNVTVIS-YGKERPVNPESSRLAWSQNRR-SVTVKAK 155 >gi|153010830|ref|YP_001372044.1| OmpA/MotB domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151562718|gb|ABS16215.1| OmpA/MotB domain protein [Ochrobactrum anthropi ATCC 49188] Length = 742 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIG----EVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ L+K+ +VLA I GHTDA R N LS R Sbjct: 628 FATGSAEVSLSQAKTLRKVATAMQKVLAKDPGETFFIEGHTDAV---GSDRSNLVLSDKR 684 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + G+ LKI + NRR+ I Sbjct: 685 AESVASLLTEVYEIPPENLVTQGYGERFLKIRTQAAEQENRRVTI 729 >gi|53719675|ref|YP_108661.1| OmpA family protein [Burkholderia pseudomallei K96243] gi|76810742|ref|YP_333152.1| OmpA family protein [Burkholderia pseudomallei 1710b] gi|126453035|ref|YP_001065862.1| OmpA family outer membrane protein [Burkholderia pseudomallei 1106a] gi|134282791|ref|ZP_01769494.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 305] gi|167720016|ref|ZP_02403252.1| outer membrane protein, OmpA family [Burkholderia pseudomallei DM98] gi|167739026|ref|ZP_02411800.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 14] gi|167816239|ref|ZP_02447919.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 91] gi|167824618|ref|ZP_02456089.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 9] gi|167846148|ref|ZP_02471656.1| outer membrane protein, OmpA family [Burkholderia pseudomallei B7210] gi|167894724|ref|ZP_02482126.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 7894] gi|167903126|ref|ZP_02490331.1| outer membrane protein, OmpA family [Burkholderia pseudomallei NCTC 13177] gi|167911363|ref|ZP_02498454.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 112] gi|167919383|ref|ZP_02506474.1| outer membrane protein, OmpA family [Burkholderia pseudomallei BCC215] gi|217423544|ref|ZP_03455045.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 576] gi|226196265|ref|ZP_03791848.1| outer membrane protein, OmpA family [Burkholderia pseudomallei Pakistan 9] gi|237811866|ref|YP_002896317.1| outer membrane protein, OmpA family [Burkholderia pseudomallei MSHR346] gi|242314198|ref|ZP_04813214.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1106b] gi|254180141|ref|ZP_04886740.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1655] gi|254188449|ref|ZP_04894960.1| outer membrane protein, OmpA family [Burkholderia pseudomallei Pasteur 52237] gi|254198064|ref|ZP_04904486.1| outer membrane protein, OmpA family [Burkholderia pseudomallei S13] gi|254259492|ref|ZP_04950546.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1710a] gi|254297974|ref|ZP_04965427.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 406e] gi|52210089|emb|CAH36063.1| OmpA family protein [Burkholderia pseudomallei K96243] gi|76580195|gb|ABA49670.1| OmpA family protein [Burkholderia pseudomallei 1710b] gi|126226677|gb|ABN90217.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1106a] gi|134245877|gb|EBA45968.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 305] gi|157808001|gb|EDO85171.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 406e] gi|157936128|gb|EDO91798.1| outer membrane protein, OmpA family [Burkholderia pseudomallei Pasteur 52237] gi|169654805|gb|EDS87498.1| outer membrane protein, OmpA family [Burkholderia pseudomallei S13] gi|184210681|gb|EDU07724.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1655] gi|217393402|gb|EEC33423.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 576] gi|225931663|gb|EEH27667.1| outer membrane protein, OmpA family [Burkholderia pseudomallei Pakistan 9] gi|237506719|gb|ACQ99037.1| outer membrane protein, OmpA family [Burkholderia pseudomallei MSHR346] gi|242137437|gb|EES23839.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1106b] gi|254218181|gb|EET07565.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 1710a] Length = 236 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 MF ++ + L ++ + L + +SI G+TD N +LS R Sbjct: 120 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 176 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337 A + L+ +GV D + G + D A NRR++++ Sbjct: 177 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLAPNRRVEVV 229 >gi|323978486|gb|EGB73569.1| OmpA family protein [Escherichia coli TW10509] Length = 160 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTRARMDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|300728041|ref|ZP_07061414.1| putative outer membrane protein [Prevotella bryantii B14] gi|299774643|gb|EFI71262.1| putative outer membrane protein [Prevotella bryantii B14] Length = 410 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S + L + E+L +V +SI G+ + A N RL+ RA + Sbjct: 312 FAHNSHRLTQKEADKLNAVAEMLKAQPDVTLSINGYASDT---GSAGYNLRLTQLRADTV 368 Query: 296 YQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDILVEDR 341 +L + G+ R+ + G + + RR+++++ ++ Sbjct: 369 KMLLKRLGIDGHRLHPVIGKGIDRKAPTGKEA-----RRVELMMNEK 410 >gi|71282015|ref|YP_270145.1| sodium-type flagellar protein MotY [Colwellia psychrerythraea 34H] gi|71147755|gb|AAZ28228.1| sodium-type flagellar protein MotY [Colwellia psychrerythraea 34H] Length = 291 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 + SS + ++ I + L+ E+ + I ++D+ N +LS RA Sbjct: 187 YQSSSDKFTKASQRRIEMIRQYLSLDPELELVLIDAYSDSY---GGRWSNLKLSERRAAK 243 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 +++G+ RI G+ R ++D NRR+ I Sbjct: 244 IRDYFVENGIEVSRIEA-KGYGEKRHISSNDTTLGRGKNRRVVI 286 >gi|295097172|emb|CBK86262.1| Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 146 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FDK+ + PE+ +Q + LA + + GHTD N LSL R Sbjct: 38 DKILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNY---GEESYNEALSLKR 94 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A K G ++ + NRR+ +++ Sbjct: 95 ANVVADAWAKGANIPRSNLTTRGLGKKYPISSNRTAQGRAENRRVAVVI 143 >gi|148826224|ref|YP_001290977.1| outer membrane protein P5 [Haemophilus influenzae PittEE] gi|148716384|gb|ABQ98594.1| Outer membrane protein P5 [Haemophilus influenzae PittEE] Length = 238 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + +++ G+TD + A + +LS +RA S Sbjct: 125 FAFGKANLKPQAQATLDSIYGEMSQVKSAKVAVAGYTD--RIGSDAFNV-KLSQERADSV 181 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 182 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 234 >gi|91777230|ref|YP_552438.1| OmpA/MotB family outer membrane protein [Burkholderia xenovorans LB400] gi|91689890|gb|ABE33088.1| outer membrane protein, OmpA/MotB family [Burkholderia xenovorans LB400] Length = 372 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 16/111 (14%) Query: 237 FDKSS-SIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD+ + LP L ++ L + +V I I G+TD N +LS RA Sbjct: 237 FDRGDLAGMLPAGKAKLDELVRNLKQADDVTSIRIDGYTDRL---GSDSYNRQLSAKRAE 293 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDI 336 + + L+ GV+ G + + N NRR+++ Sbjct: 294 TVKRYLLSGGVTAP--ISARGRGKEDPVVQCNDHNREALIACLAPNRRVEL 342 >gi|329124105|ref|ZP_08252652.1| outer membrane protein A [Haemophilus aegyptius ATCC 11116] gi|327467530|gb|EGF13028.1| outer membrane protein A [Haemophilus aegyptius ATCC 11116] Length = 348 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P+ L I ++ + + + G+TD + A + +LS RA S Sbjct: 235 FAFGKANLKPQAQATLDSIYGQMSQVKSAKVVVAGYTD--RIGSDAFNV-KLSQKRADSV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILV 338 + GV+ D IS +G+ + + +RR++I V Sbjct: 292 ANYFVAKGVAADAISA-TGYGKANPVTGATCDQVKGRKALIACLAPDRRVEIAV 344 >gi|298386442|ref|ZP_06995998.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14] gi|298260819|gb|EFI03687.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14] Length = 363 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDN 284 + I + F +S+ + + + E L ++T +S+ G+ D AR N Sbjct: 255 VVIEPMKQNIFFAINSAKIQDDQQAKIASLVEYLEKNATAKVSVTGYADKG--TGNARIN 312 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +LS RA + + L G++ DRI+ ++ + R+ I + Sbjct: 313 SKLSEKRANNVVEALKAKGIAADRIT-VAYKGDTVQPYNT----PEENRVSICI 361 >gi|127512457|ref|YP_001093654.1| OmpA domain-containing protein [Shewanella loihica PV-4] gi|126637752|gb|ABO23395.1| OmpA domain protein [Shewanella loihica PV-4] Length = 180 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 7/132 (5%) Query: 205 GLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 G V V +L + I + + + FD S + VL GE L Sbjct: 48 GGVETGGVAPILTPEEQQRIKYQELRKEHIIYFDFDRSSVSSDFSEVLNAHGEYLLEHPN 107 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI- 322 + I GH D R N L RA + + L GV ++S +S + + + Sbjct: 108 VRVMIEGHADE---RGTPEYNIALGERRAKAVAKYLQSMGVLPSQMSIVS-YGEEKPQDF 163 Query: 323 -ASDPMNSANRR 333 +D + NRR Sbjct: 164 SRTDDGFAKNRR 175 >gi|262404181|ref|ZP_06080736.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio sp. RC586] gi|262349213|gb|EEY98351.1| peptidoglycan-associated outer membrane lipoprotein [Vibrio sp. RC586] Length = 172 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 7/119 (5%) Query: 218 ETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP 276 + T + + + T F ++ + +L L + ++I GH D Sbjct: 53 QLTEQELKEQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLKVTIEGHADE-- 110 Query: 277 FRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 R N L RA + + L GV D++S +S + + + SD + NRR Sbjct: 111 -RGTPEYNIALGERRAQAVAKYLEALGVQADQVSIVS-YGEEKPLVLGQSDEAYAKNRR 167 >gi|332520207|ref|ZP_08396671.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044766|gb|EGI80960.1| OmpA/MotB domain protein [Lacinutrix algicola 5H-3-7-4] Length = 648 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 13/111 (11%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + V L+KI + + + I +R HTD+ RN + N LS RA + Sbjct: 540 FDLDKHYIRQDAEVELRKIIDFMNVYSNIKIDVRSHTDS---RNTSEYNLDLSNRRAQAT 596 Query: 296 YQVLMK-SGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 L+ G++ R++ G+ +L+ S+ + NRR + ++ Sbjct: 597 IDYLVNVGGINRARLTG-KGYGELQLRNRCGDGVPCSESEHQLNRRSEFII 646 >gi|330815889|ref|YP_004359594.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3] gi|327368282|gb|AEA59638.1| OmpA/MotB domain protein [Burkholderia gladioli BSR3] Length = 218 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 98 QADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLR 154 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++ G N N RR+++ V Sbjct: 155 RAQAVKSYLVSKGVESSKVY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 211 Query: 340 DRQ 342 Q Sbjct: 212 GTQ 214 >gi|294678711|ref|YP_003579326.1| OmpA/MotB domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477531|gb|ADE86919.1| OmpA/MotB domain protein [Rhodobacter capsulatus SB 1003] Length = 173 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 8/105 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLDRAYSA 295 F S E L + L +I GH D N L RA S Sbjct: 67 FVVDQSTLTDEARATLSGQAQWLNSHGNYAAIIEGHADEQ---GTREYNLALGARRASSV 123 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR-IDIL 337 Q L+ GV R+ +S + R AS+ S NRR + ++ Sbjct: 124 QQYLISQGVPATRLRTVS-YGKERPIATCASESCFSQNRRAVTVI 167 >gi|238026527|ref|YP_002910758.1| OmpA/MotB domain-containing protein [Burkholderia glumae BGR1] gi|237875721|gb|ACR28054.1| OmpA/MotB domain protein [Burkholderia glumae BGR1] Length = 218 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI-RGHTDASPFRNIARDNWRLSLD 290 + +FD + P L ++ + + + G+TD + ++ RLSL Sbjct: 98 QADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTD--RIGSDKYND-RLSLR 154 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN-----------RRIDILVE 339 RA + L+ GV ++ G N N RR+++ V Sbjct: 155 RAQAVKSYLVSKGVESSKVY-TEGKGKRNPVTTG--CNQKNRKQLIACLAPDRRVEVEVV 211 Query: 340 DRQ 342 Q Sbjct: 212 GTQ 214 >gi|153947861|ref|YP_001401507.1| outer membrane protein A [Yersinia pseudotuberculosis IP 31758] gi|152959356|gb|ABS46817.1| outer membrane protein A [Yersinia pseudotuberculosis IP 31758] Length = 357 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%) Query: 228 IIDQR-----NTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRN 279 I+D + + +F + + PE L ++ L+ + + G D Sbjct: 220 IVDTKRFTLKSDVLFGFNKANLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---G 276 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA---- 330 N LS RA S L+ G+ D+I+ G + P + Sbjct: 277 QPAPNLALSQRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECL 335 Query: 331 --NRRIDILVE 339 +RR++I V+ Sbjct: 336 APDRRVEIEVK 346 >gi|330448107|ref|ZP_08311755.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492298|dbj|GAA06252.1| ompA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 348 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 7/96 (7%) Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 E LQ + + L + + G+T + A N +LS RA + +L + Sbjct: 232 LTAEDQQKLQPMMQRLTRYPSATVEVTGYTSNT---GSAAYNQKLSEKRAKNVAHLLSQY 288 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + ++I+ G ++D +ANRR+++ Sbjct: 289 VANPNQITA-KGMGEATPVASNDTAEGRAANRRVEV 323 >gi|29840731|ref|NP_829837.1| peptidoglycan-associated lipoprotein [Chlamydophila caviae GPIC] gi|29835081|gb|AAP05715.1| peptidoglycan-associated lipoprotein [Chlamydophila caviae GPIC] Length = 191 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + + S + + I GHTD R A N L RA + Sbjct: 87 FATDSYTIKGEENLAILSSLVRQMQKSPKTTLYIEGHTDE---RGAAAYNLALGARRANA 143 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILVEDR 341 Q L+K G+S DR+ IS + + + + NRR + V R Sbjct: 144 VKQHLIKQGISADRLFTIS-YGKEQPVNSGHNELAWQQNRRTEFKVHAR 191 >gi|330860773|emb|CBX71062.1| outer membrane protein A [Yersinia enterocolitica W22703] Length = 363 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 235 KSDVLFAFNKSTLKPEGQQALDQLYAQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 291 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+I+ G + P + +RR++I Sbjct: 292 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 350 Query: 338 VE 339 V+ Sbjct: 351 VK 352 >gi|107101995|ref|ZP_01365913.1| hypothetical protein PaerPA_01003042 [Pseudomonas aeruginosa PACS2] Length = 461 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + S++ + ++ +Q++ + L E + G D P + R LS RA Sbjct: 360 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 416 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + + L + GVS +I+GF ++D NRR+++ V Sbjct: 417 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 460 >gi|146276615|ref|YP_001166774.1| OmpA domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554856|gb|ABP69469.1| OmpA domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 182 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 + F S L + L A++ I I GH D N L R Sbjct: 72 DRVFFLVDQSTLNDSARTTLDTQSQWLMANADYAIIIEGHADEQ---GTREYNLALGARR 128 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 A + L+ G++ R+ +S G +++ S NRR Sbjct: 129 ASAVQDYLISKGIAPSRMKTVSYGKERPVEVCSTEECYSKNRR 171 >gi|239906031|ref|YP_002952770.1| putative peptidoglycan-associated lipoprotein [Desulfovibrio magneticus RS-1] gi|239795895|dbj|BAH74884.1| putative peptidoglycan-associated lipoprotein [Desulfovibrio magneticus RS-1] Length = 171 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS E L + E+L + + + G+ D R A N L RA +A Sbjct: 69 FALDSSNLSAEARQNLTRKAEILRQYPQIKLIVEGNCDQ---RGTAEYNLALGERRAQAA 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 Q L+ G+ DR+S +S + R S+ + NRR Sbjct: 126 AQYLVNLGIGADRLSTVS-YGKERPLDPGTSEAAYAKNRR 164 >gi|90408691|ref|ZP_01216841.1| putative outer membrane protein OmpA [Psychromonas sp. CNPT3] gi|90310205|gb|EAS38340.1| putative outer membrane protein OmpA [Psychromonas sp. CNPT3] Length = 415 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 +F +SS ++ I + L I I G++D ++ + W +S RA Sbjct: 296 LFSVNSSQFKTNP-DLIDLIMKSLQSKEGNIIITGYSDN--LGSVKYNQW-ISEKRAKVV 351 Query: 296 YQVLMKSGVSEDR-ISKISGFAHHRLKIASDPMNSANRRIDI 336 ++ G+S R I K G + + + NRR+++ Sbjct: 352 ANYIISEGISSSRLIVKSEGEFYPVASNKTATGRAENRRVEL 393 >gi|254805583|ref|YP_003083804.1| class 4 outer membrane protein [Neisseria meningitidis alpha14] gi|254669125|emb|CBA07752.1| class 4 outer membrane protein [Neisseria meningitidis alpha14] Length = 242 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + L+ + + + GHTD F + N LS RAY Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSDKYNQALSERRAYV 160 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV RIS + G + Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184 >gi|15597744|ref|NP_251238.1| hypothetical protein PA2548 [Pseudomonas aeruginosa PAO1] gi|9948606|gb|AAG05936.1|AE004682_8 hypothetical protein PA2548 [Pseudomonas aeruginosa PAO1] Length = 464 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + S++ + ++ +Q++ + L E + G D P + R LS RA Sbjct: 363 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 419 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + + L + GVS +I+GF ++D NRR+++ V Sbjct: 420 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 463 >gi|15676296|ref|NP_273431.1| outer membrane protein class 4 [Neisseria meningitidis MC58] gi|304386635|ref|ZP_07368919.1| outer membrane protein class 4 [Neisseria meningitidis ATCC 13091] gi|60416397|sp|P0A0V3|OMP4_NEIMB RecName: Full=Outer membrane protein class 4; Flags: Precursor gi|7225603|gb|AAF40822.1| outer membrane protein class 4 [Neisseria meningitidis MC58] gi|304339285|gb|EFM05361.1| outer membrane protein class 4 [Neisseria meningitidis ATCC 13091] gi|316984886|gb|EFV63842.1| ompA family protein [Neisseria meningitidis H44/76] gi|325128875|gb|EGC51731.1| ompA family protein [Neisseria meningitidis N1568] gi|325141028|gb|EGC63534.1| ompA family protein [Neisseria meningitidis CU385] gi|325199575|gb|ADY95030.1| ompA family protein [Neisseria meningitidis H44/76] gi|325203490|gb|ADY98943.1| ompA family protein [Neisseria meningitidis M01-240355] Length = 242 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + L+ + + + GHTD F + N LS RAY Sbjct: 104 LFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTD---FMGSDKYNQALSERRAYV 160 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 L+ +GV RIS + G + Sbjct: 161 VANNLVSNGVPVSRISAV-GLGESQ 184 >gi|299773253|gb|ADJ38701.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|296389028|ref|ZP_06878503.1| putative ABC-type periplasmic phosphate-binding protein [Pseudomonas aeruginosa PAb1] Length = 461 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + S++ + ++ +Q++ + L E + G D P + R LS RA Sbjct: 360 FQEGSALLDNKALLDVQRLLDYLRQNQKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 416 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + + L + GVS +I+GF ++D NRR+++ V Sbjct: 417 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 460 >gi|313107451|ref|ZP_07793639.1| putative ABC-type periplasmic phosphate-binding protein [Pseudomonas aeruginosa 39016] gi|310880141|gb|EFQ38735.1| putative ABC-type periplasmic phosphate-binding protein [Pseudomonas aeruginosa 39016] Length = 461 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + S++ + ++ +Q++ + L E + G D P + R LS RA Sbjct: 360 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 416 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + + L + GVS +I+GF ++D NRR+++ V Sbjct: 417 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 460 >gi|254240978|ref|ZP_04934300.1| hypothetical protein PA2G_01659 [Pseudomonas aeruginosa 2192] gi|126194356|gb|EAZ58419.1| hypothetical protein PA2G_01659 [Pseudomonas aeruginosa 2192] Length = 464 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + S++ + ++ +Q++ + L E + G D P + R LS RA Sbjct: 363 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 419 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + + L + GVS +I+GF ++D NRR+++ V Sbjct: 420 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 463 >gi|315223455|ref|ZP_07865312.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287] gi|314946628|gb|EFS98619.1| OmpA/MotB domain protein [Capnocytophaga ochracea F0287] Length = 397 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 78/241 (32%), Gaps = 13/241 (5%) Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 P+ N+I +D + NS T Q + N F L+ K Sbjct: 148 PQLRISNRIAFLLDASMYINSKQQLTYDTKSANGQQGFQGNHFTLTAGLNIALGK---HG 204 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 K +LE+ + N + +A K+ K + + + D Sbjct: 205 KHADWAAASKKDELEEVAQRVANLENNVADLKSEVANKQNKMNDANGNNVPDEIESYLND 264 Query: 210 NIVKGVLF----ETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 N E + +I + FD +SS P + + + + + + Sbjct: 265 NYKAKDKVGENGEVKDDDVAADLIRKGYINAYFDFNSSKPQISSSWAVDFVAKYMKSNPN 324 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I+I G+ D + N LS RA + +L+K+G+ RI+ G Sbjct: 325 AHININGYADEL---GGTQYNQTLSQKRADAVKDLLVKAGIDGSRITA-EGKGVDASVDK 380 Query: 324 S 324 + Sbjct: 381 N 381 >gi|15607090|ref|NP_214472.1| peptidoglycan associated lipoprotein [Aquifex aeolicus VF5] gi|2984343|gb|AAC07863.1| peptidoglycan associated lipoprotein [Aquifex aeolicus VF5] Length = 203 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K+ + +L K++S L V + + I+ +Q FD + + Sbjct: 58 KENIANLDKRVS-ALESDVDSLRREHEEIRAEIEKLKITGKEQV-RVYFDSNKFTLRDDA 115 Query: 249 IVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 L ++ + + + + + G+ D R N+ LS+ RA + L+K+G+ + Sbjct: 116 KATLDELIDAVRDKDIKKVIVVGYADPRGTRGY---NFELSMKRAQNVAAYLIKNGIPVE 172 Query: 308 RISKISGFAHHRLKIASDPMNSANRRIDILVE 339 ++ +I+ + L + R +D++V Sbjct: 173 KV-RIASYGE-ELANLIGERHPEQRAVDVIVL 202 >gi|300867579|ref|ZP_07112229.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300334467|emb|CBN57399.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 982 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 12/200 (6%) Query: 115 IGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 G+ + + E + + + ++ ++ + + + +N+ E Sbjct: 762 TGNLPNQGLRAKAEKIAQATAPNLKVDNKIIAIDVPPDPASVAAEVKRVTAVLNQIEGVS 821 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNT 234 + E+ + ++ A+KI+ ++ + V+ V+ + I+ Sbjct: 822 ISSRYGERKVTVEGTVMQMTDAQKIAQSMKQVPG---VQSVISTVKLNPLKIT-----TR 873 Query: 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F+ S+ E V+ I E L + + I GH+D + N +L+ RA Sbjct: 874 IYFNVGSATLNSEYGEVIGNIKEFLKQYPQKHLKIIGHSDR---KGNLAINQQLARKRAE 930 Query: 294 SAYQVLMKSGVSEDRISKIS 313 + L++ GV R+ ++ Sbjct: 931 AVRVALVQQGVDPRRLQVVA 950 >gi|297620366|ref|YP_003708503.1| Sodium-type flagellar protein motY precursor [Waddlia chondrophila WSU 86-1044] gi|297375667|gb|ADI37497.1| Sodium-type flagellar protein motY precursor [Waddlia chondrophila WSU 86-1044] Length = 248 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 252 LQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 L+ I + + + + GH D R N L R+ S ++L+K GV +RI Sbjct: 158 LRTIAAYMQKHPDTYLFVEGHCDE---RGAEAYNLALGAKRSNSVRELLIKEGVRPERIF 214 Query: 311 KISGFAHHRLKIA--SDPMNSANRRIDILVED 340 +S + R + ++ S NRR + + + Sbjct: 215 TVS-YGKERPADSGHNEESWSKNRRAEFKIFN 245 >gi|157959916|ref|YP_001499950.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157844916|gb|ABV85415.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 303 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F SSS+ L + L + + GH DA N LS +RA Sbjct: 182 LFAPSSSLLNAAHEQDLYAVYRYLQADPSIVEVLVDGHADA---SGDHLANLVLSKERAD 238 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L++ GVS ++ + +++ NRR+ + Sbjct: 239 EVVSRLIELGVSP-KMIQTRHHGTRTPVASNNSTQGRELNRRVTL 282 >gi|295395656|ref|ZP_06805848.1| peptidoglycan-associated lipoprotein OprL [Brevibacterium mcbrellneri ATCC 49030] gi|294971472|gb|EFG47355.1| peptidoglycan-associated lipoprotein OprL [Brevibacterium mcbrellneri ATCC 49030] Length = 602 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 21/114 (18%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAY 293 +F+ S + + + E L S + + + GHTD N LS RA Sbjct: 295 LFEFDSDKLNKDAQKTIDSVAEELKKSAKGQKVVVEGHTDDE---GDEGYNQGLSERRAE 351 Query: 294 SAYQV----LMKSGVSEDRISKISGFAHHRLKIAS-----DP---MNSANRRID 335 S + L +G+ + GF + + + +P + NRR+ Sbjct: 352 SVKKAVEPKLSGAGIQ----LETKGFGETKPIVPNRDGKGNPIKKNQAKNRRVS 401 >gi|332664418|ref|YP_004447206.1| OmpA/MotB domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333232|gb|AEE50333.1| OmpA/MotB domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 289 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 11/101 (10%) Query: 247 ETIVVL------QKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 E +L + + LA +SI GHTD++ A++N +L L+RA + + Sbjct: 192 EFRPILPLVQYADSVRQYLALHKNKKLSIIGHTDST---GDAKNNLKLGLERAQNTMRYF 248 Query: 300 MKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339 + G+ +++ S G H +++ NRRI+ ++E Sbjct: 249 RELGIPPSQMAAYSEGSKHPVSDNSTEVGKRRNRRINFIIE 289 Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 251 VLQKIGEVLAHSTEVI-SIRGH--TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 L KI L + ++ +I G TD + +N LS RA + +++++ G+S Sbjct: 81 FLDKIANHLQQNPTILLNITGGYGTDEETAASGFFENLGLS--RADAVRKLMIQRGISPG 138 Query: 308 RI 309 R+ Sbjct: 139 RV 140 >gi|254000099|ref|YP_003052162.1| peptidoglycan-associated lipoprotein [Methylovorus sp. SIP3-4] gi|313202058|ref|YP_004040716.1| peptidoglycan-associated lipoprotein [Methylovorus sp. MP688] gi|253986778|gb|ACT51635.1| peptidoglycan-associated lipoprotein [Methylovorus sp. SIP3-4] gi|312441374|gb|ADQ85480.1| peptidoglycan-associated lipoprotein [Methylovorus sp. MP688] Length = 178 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L + + ++G+TD R N L RA + Sbjct: 75 FDFDKDEVKPEYRDLVNAHAKYLVEHPDAKVILQGNTDE---RGTREYNLALGQRRAVAV 131 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDIL 337 QVL GVS+ +I IS + + + A + S NRR DI+ Sbjct: 132 KQVLNLQGVSDKQIETIS-YGEEKPQAAGSDEAAYSKNRRADIV 174 >gi|213967029|ref|ZP_03395179.1| OmpA family protein [Pseudomonas syringae pv. tomato T1] gi|301385214|ref|ZP_07233632.1| OmpA family protein [Pseudomonas syringae pv. tomato Max13] gi|302059607|ref|ZP_07251148.1| OmpA family protein [Pseudomonas syringae pv. tomato K40] gi|302130155|ref|ZP_07256145.1| OmpA family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928351|gb|EEB61896.1| OmpA family protein [Pseudomonas syringae pv. tomato T1] Length = 447 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSAKLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447 >gi|115377102|ref|ZP_01464317.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|310822806|ref|YP_003955164.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] gi|115365877|gb|EAU64897.1| OmpA/MotB [Stigmatella aurantiaca DW4/3-1] gi|309395878|gb|ADO73337.1| OmpA family protein [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 15/112 (13%) Query: 237 FDKSSSIPLPETIVVLQ----KIGEVLAH----STEVISIRGHTDASPFRNIARDNWRLS 288 F S+ L +I E ++ + + + GHTD+ N LS Sbjct: 256 FASGSAELAVGERGKLDHSHARIAEAVSRYGRFAALRLYVLGHTDSV---GATASNRELS 312 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILV 338 L RA S K G+ GF + + NRR + ++ Sbjct: 313 LQRARSIAAYFHKRGLRLPIFY--EGFGEQAPAVMTPDETAEVGNRRAEYIL 362 >gi|330810626|ref|YP_004355088.1| hypothetical protein PSEBR_a3732 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378734|gb|AEA70084.1| Conserved hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 449 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F++ S+ + L ++ + + + +++ G DA P R LS R Sbjct: 348 FEEGSASLDNKAHQDLGRVFDYIKQHGKTDRSVTLVGFGDAKDDPARADL-----LSKLR 402 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A + + L+K GV+ + ++ GF A+ D NRR+++ V Sbjct: 403 AMAVRRELVKYGVA---LREVRGFGALMPVAANSEDAGRVRNRRVEVWV 448 >gi|167374415|gb|ABZ79137.1| outer membrane protein [Riemerella anatipestifer] Length = 338 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 235 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 291 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 292 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 333 >gi|167374413|gb|ABZ79136.1| outer membrane protein [Riemerella anatipestifer] Length = 338 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 235 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 291 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 292 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 333 >gi|170739243|ref|YP_001767898.1| OmpA/MotB domain-containing protein [Methylobacterium sp. 4-46] gi|168193517|gb|ACA15464.1| OmpA/MotB domain protein [Methylobacterium sp. 4-46] Length = 210 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F +SS + + +G LA I I GHTD + R N RLS RA Sbjct: 99 FAYNSSKIGHGALAQVSALGASLARPELRDSTILIVGHTDG---KGSDRGNQRLSERRAR 155 Query: 294 SAYQVLMKS-GVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 + +++ GV+ + + GF LK A++P +ANRR+ Sbjct: 156 AVKDYIVRHYGVAAGNLIGV-GFGKSHLKEAANPYAAANRRVT 197 >gi|50235099|gb|AAT70752.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235103|gb|AAT70754.1| OmpA [Riemerella anatipestifer] gi|50235105|gb|AAT70755.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235075|gb|AAT70740.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235077|gb|AAT70741.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235095|gb|AAT70750.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235081|gb|AAT70743.1| OmpA [Riemerella anatipestifer] gi|50235097|gb|AAT70751.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235093|gb|AAT70749.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|50235107|gb|AAT70756.1| OmpA [Riemerella anatipestifer] Length = 387 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + S PE+ L + EV+ + + GHTD + A N +LS +RA S Sbjct: 258 FFHFNKSSIRPESNTKLDQAAEVIKSSNGGTFLVVGHTD---VKGNANYNLKLSRERAAS 314 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH-HRLKIASDPMNSANRRI 334 L GVS ++ SK G A AS+ +R++ Sbjct: 315 VVAALEARGVSPSQLKSKGVGSAEATVPASASNEERMKDRKV 356 >gi|83859799|ref|ZP_00953319.1| Peptidoglycan-associated lipoprotein [Oceanicaulis alexandrii HTCC2633] gi|83852158|gb|EAP90012.1| Peptidoglycan-associated lipoprotein [Oceanicaulis alexandrii HTCC2633] Length = 170 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 7/103 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + F E L++ L+ I I G+ D R N L R Sbjct: 60 DRVFFALDQHTLSNEARATLRRQAAWLSSYPGARILIAGNCDE---RGTREYNLALGARR 116 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 A +A L+ GV RIS +S + R + NR Sbjct: 117 ANAARDFLVSQGVDPSRISTVS-YGKERPVCNQSTEQCWATNR 158 >gi|126441843|ref|YP_001058607.1| OmpA family outer membrane protein [Burkholderia pseudomallei 668] gi|126221336|gb|ABN84842.1| outer membrane protein, OmpA family [Burkholderia pseudomallei 668] Length = 236 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 236 MFD---KSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 MF ++ + L ++ + L + +SI G+TD N +LS R Sbjct: 120 MFAFDRADAASMTEQGRQQLSQLAQRLTDRHAQTVSIVGYTDRL---GSDAYNRQLSQAR 176 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--------NRRIDIL 337 A + L+ +GV D + G + D A NRR++++ Sbjct: 177 AKTVGDYLIAAGVPADSVHA-EGRGASDPLVQCDQRERAALIACLAPNRRVEVV 229 >gi|84387079|ref|ZP_00990102.1| putative outer membrane protein [Vibrio splendidus 12B01] gi|84378154|gb|EAP95014.1| putative outer membrane protein [Vibrio splendidus 12B01] Length = 205 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F +S+ P + ++++ L I ++G+ A+ N +LS +RA Sbjct: 86 LFANNSTEINPVFLGQIRQMAAFLKRYEGTSIELQGYASKV---GNAKHNLKLSKERASH 142 Query: 295 AYQVLMKSGVSEDRISKISGFAHHR 319 + L+ +G+ R++ I G Sbjct: 143 VRRALISNGIQPSRVN-IVGHGDSE 166 >gi|330875090|gb|EGH09239.1| OmpA family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 447 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA---HSTEVISIRGHTDAS--PFRNIARDNWRLSLDR 291 F + S+ + L+++ E L + +++ G DA P R LS R Sbjct: 346 FAQGSARLDNKAQQDLKRVAEYLKASGKLNQQVTLVGFGDAKSDPARAAL-----LSRLR 400 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 A + + L+KSGV+ I G + D NRR+++ V+ Sbjct: 401 AMAVRRELIKSGVT---FRDILGLGDEMPVATNDIDDGRIKNRRVEVWVQ 447 >gi|299773249|gb|ADJ38699.1| outer membrane protein P5 [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P + L E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPASAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|224714291|gb|ACN62140.1| outer membrane protein A [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P + L E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPASAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|209968928|gb|ACJ02825.1| outer membrane protein P5 [Haemophilus parasuis] gi|224714287|gb|ACN62138.1| outer membrane protein A [Haemophilus parasuis] Length = 365 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P + L E++ + + G+TD N LS RA Sbjct: 245 LFDFGKANLKPASAQTLDAAHAEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 301 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ GV+ ++ + G+ + D + +RR++I V+ Sbjct: 302 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALIVCLAPDRRVEIQVQGS 360 Query: 342 Q 342 + Sbjct: 361 K 361 >gi|126662707|ref|ZP_01733706.1| possible outer membrane protein [Flavobacteria bacterium BAL38] gi|126626086|gb|EAZ96775.1| possible outer membrane protein [Flavobacteria bacterium BAL38] Length = 283 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%) Query: 227 SIIDQR---NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF---RN 279 IID R + +F++ SS + L +I L I+GH +P Sbjct: 155 RIIDDRIYLDHVLFERGSSQLTYKAKKELDRIALELHKYKNIHFEIQGHVCCTPTFQKEA 214 Query: 280 IARDNW--RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 I RD LS++RA Y + +S+ R++ G+ + + ++ RR+++L Sbjct: 215 IDRDTKKRELSINRAKRVYNYFLMKRISKTRMT-FKGYGNTQSLKKGSTLD---RRVELL 270 Query: 338 V 338 + Sbjct: 271 I 271 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 11/121 (9%) Query: 226 ISIIDQRN---TPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIA 281 ISI + + F+ + E V+ + ++ E + I G+ D R Sbjct: 15 ISIAQEDEEVHSIFFEFNKFNLKEEQADAVVAFVSKIDTSRIESVQIFGYCDD---RGKD 71 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFA----HHRLKIASDPMNSANRRIDIL 337 N+ LS +RA + L++ G+ I + G ++ S NRR+D++ Sbjct: 72 AYNYTLSTNRANTVKDKLIEKGIKSKIIITLEGKGRIMLDEDMQTNIPEARSKNRRVDVV 131 Query: 338 V 338 V Sbjct: 132 V 132 >gi|116050492|ref|YP_790689.1| hypothetical protein PA14_31620 [Pseudomonas aeruginosa UCBPP-PA14] gi|218891473|ref|YP_002440340.1| putative ABC-type periplasmic phosphate-binding protein [Pseudomonas aeruginosa LESB58] gi|254235540|ref|ZP_04928863.1| hypothetical protein PACG_01464 [Pseudomonas aeruginosa C3719] gi|115585713|gb|ABJ11728.1| putative ABC-type periplasmic phosphate-binding protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126167471|gb|EAZ52982.1| hypothetical protein PACG_01464 [Pseudomonas aeruginosa C3719] gi|218771699|emb|CAW27473.1| putative ABC-type periplasmic phosphate-binding protein [Pseudomonas aeruginosa LESB58] Length = 464 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 F + S++ + ++ +Q++ + L E + G D P + R LS RA Sbjct: 363 FQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGD--PKSDAERSVL-LSRLRAM 419 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 + + L + GVS +I+GF ++D NRR+++ V Sbjct: 420 AVRRELARGGVS---FREIAGFGDELPVASNDQELGRQKNRRVEVWV 463 >gi|86141821|ref|ZP_01060345.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] gi|85831384|gb|EAQ49840.1| OmpA family protein [Leeuwenhoekiella blandensis MED217] Length = 653 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P+ L K+ V+ + V+ IR HTD+ R N LS RA S Sbjct: 545 FDFDRFNIRPDAAEELTKVLAVMESNPSLVVEIRSHTDS---RGNDAYNLSLSDKRAKST 601 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 ++ G+ RIS GF +L ++ + NRR + +V Sbjct: 602 ADWIVNRGIEPSRISG-EGFGETQLINDCGNGADCTEEQHQLNRRSEFIV 650 >gi|238757655|ref|ZP_04618839.1| Outer membrane protein A [Yersinia aldovae ATCC 35236] gi|238704160|gb|EEP96693.1| Outer membrane protein A [Yersinia aldovae ATCC 35236] Length = 350 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 222 KSDVLFAFNKSNLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ D+I+ G + P + +RR++I Sbjct: 279 QRRADSVRDYLVSKGIPADKITA-RGEGQANPVTGNTCDNVKPRAALIDCLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|187735188|ref|YP_001877300.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425240|gb|ACD04519.1| OmpA/MotB domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 439 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 14/114 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F + + LQ + E + S + + I GHTD R N LS RA + Sbjct: 329 FFGFNEDTLSKRSERQLQIVAEAIKMDSGKKLEISGHTDDV---GSERYNQGLSERRAAA 385 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLK---------IASDPMNSANRRIDILVE 339 L++ GV +RI GF + + D NRR ++ ++ Sbjct: 386 VKAQLVQFGVPAERIV-TKGFGKSQPRRTYSPTADEETRDEARKENRRAEMYLD 438 >gi|54298967|ref|YP_125336.1| hypothetical protein lpp3034 [Legionella pneumophila str. Paris] gi|53752752|emb|CAH14187.1| hypothetical protein lpp3034 [Legionella pneumophila str. Paris] Length = 294 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + LQ+I + + +VI I GH D S +N +S RA S Sbjct: 190 FGVDSKLLSDADKAQLQRIAQYVDADVQIDVIKIIGHADDS--GRKGYNN-AISQYRAES 246 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L++ GV R I+ + +D +ANRR+ + + + Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294 >gi|298529977|ref|ZP_07017379.1| peptidoglycan-associated lipoprotein [Desulfonatronospira thiodismutans ASO3-1] gi|298509351|gb|EFI33255.1| peptidoglycan-associated lipoprotein [Desulfonatronospira thiodismutans ASO3-1] Length = 200 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 N F S + LQKI E + E + I GHTD R A N L Sbjct: 92 TANRIHFAFDSYELDADARSALQKISEHMKRFDELRLVIEGHTDE---RGTAEYNLALGE 148 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVED 340 RA +AY+ L+ GVS DR+ IS + L S+ + NRR + V D Sbjct: 149 RRARAAYEFLVLLGVSSDRLQIISYGEENPLVDESNESAWAQNRRAEFKVLD 200 >gi|219872299|ref|YP_002476674.1| outer membrane protein P5 , heat-modifiable outer membrane protein [Haemophilus parasuis SH0165] gi|219692503|gb|ACL33726.1| outer membrane protein P5 precursor, heat-modifiable outer membrane protein [Haemophilus parasuis SH0165] gi|253807583|gb|ACT36164.1| outer membrane protein P5 [Haemophilus parasuis] gi|312270777|gb|ADQ55789.1| OmpA [Haemophilus parasuis] gi|312270779|gb|ADQ55790.1| OmpA [Haemophilus parasuis] Length = 371 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKIG-EVLA-HSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD + P L + E++ + + G+TD N LS RA Sbjct: 251 LFDFGKANLKPAAAQTLDAVHTEIVNLGLANPAVQVNGYTDRI---GKDAANLTLSQKRA 307 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDR 341 + ++ GV+ ++ + G+ + + +RR++I V+ Sbjct: 308 ETVANYIVSKGVNPANVTAV-GYGEANPVTGNTCDAVKGRKALITCLAPDRRVEIQVQGS 366 Query: 342 Q 342 + Sbjct: 367 K 367 >gi|227821156|ref|YP_002825126.1| OmpA/MotB domain protein [Sinorhizobium fredii NGR234] gi|227340155|gb|ACP24373.1| OmpA/MotB domain protein [Sinorhizobium fredii NGR234] Length = 309 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 50/252 (19%) Query: 126 RLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILA 185 + E + +E + + +++ + + + +A Sbjct: 58 KDEKDRIQRDIDAIAEIVEANGRPVVTATREMKDELERLRKLLNTPEKANKMEVYNSAVA 117 Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL 245 RK L L +I+S + G+ V + +FD +P Sbjct: 118 DARKNLLTSLKSEINSRIPGV-------NVAVSANYDAL-----QFAGDGLFDSGKEVPT 165 Query: 246 PETIVVLQKIGEVLAHSTE----------------------VISIRGHTDASPFRNIARD 283 V +++I EVL + + + GHTD+ Sbjct: 166 TVGAVRMRQIAEVLDQNLGCYSLGSRRAFTENCNPAFALIDSLQVEGHTDSV---GSEVL 222 Query: 284 NWRLSLDRAYSAYQVLMKSGV--------SEDRISKISGFAHHRLKIASDPMNSA--NRR 333 N LS RA S Y ++++ E + ++GF R ++ + NRR Sbjct: 223 NMDLSAKRAASIYALMIEQKPDLVLYQNRDEQPVLSVAGFGKGRPIQQNETESGRDANRR 282 Query: 334 ID---ILVEDRQ 342 ID I+V + Sbjct: 283 IDLRFIMVVPSK 294 >gi|227356660|ref|ZP_03841046.1| peptidoglycan-associated lipoprotein [Proteus mirabilis ATCC 29906] gi|227163168|gb|EEI48099.1| peptidoglycan-associated lipoprotein [Proteus mirabilis ATCC 29906] Length = 176 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 GK + + +++ + + PL + + D + + T G A+ + + Sbjct: 3 GKQIKEQLEMQLNKVFKGLMLALPLVAVAACSSNKNDDQTDTSNNVPVTEQGPTAEELAR 62 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHT 272 L + +T I+ F E +L L + I+I GH Sbjct: 63 QQLEQLKQTNIV----------YFGFDKYDVTSEYAQLLDAHAAFLRANPSVRITIEGHA 112 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSA 330 D R N L RA + L GVS D++S +S + + + + + Sbjct: 113 DE---RGTPEYNIALGERRANAVKMYLQGKGVSADQLSIVS-YGKEKPAVLGHDEAAYAK 168 Query: 331 NRR 333 NRR Sbjct: 169 NRR 171 >gi|323143608|ref|ZP_08078285.1| peptidoglycan-associated lipoprotein [Succinatimonas hippei YIT 12066] gi|322416671|gb|EFY07328.1| peptidoglycan-associated lipoprotein [Succinatimonas hippei YIT 12066] Length = 181 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 12/119 (10%) Query: 221 RTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRN 279 + + NT F+ S + V+Q + L + + I I GHTD R Sbjct: 70 PEALR-----ENNTIYFNYDSDQIHDNYVGVMQAHAKYLRENPDAHIIIEGHTDE---RG 121 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDI 336 N L RA S + + GV +++S +S + + + N + NRR I Sbjct: 122 TPEYNIALGERRARSVARYMQNLGVDVNQLSIVS-YGEEKPLVVGHNENAWAKNRRAVI 179 >gi|116048976|ref|YP_792222.1| hypothetical protein PA14_50810 [Pseudomonas aeruginosa UCBPP-PA14] gi|296390590|ref|ZP_06880065.1| hypothetical protein PaerPAb_20651 [Pseudomonas aeruginosa PAb1] gi|115584197|gb|ABJ10212.1| probable outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 293 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +P T+ L K+ ++ I + GHTD++ N +LS +RA S + S Sbjct: 187 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 G+ D++ ++ G + AS + NRR+++L R Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 283 >gi|300023927|ref|YP_003756538.1| peptidoglycan-associated lipoprotein [Hyphomicrobium denitrificans ATCC 51888] gi|299525748|gb|ADJ24217.1| peptidoglycan-associated lipoprotein [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S PE L K + L + I+I GH D R N L RA + Sbjct: 62 FSTDSIDLTPEAQQTLSKQAQWLQQYSQYAITIEGHADE---RGTREYNIALGARRATTV 118 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 L + G++ RI IS + R + ++ S NRR Sbjct: 119 RNFLSQHGINGARIRTIS-YGKERPVAVCNDISCWSQNRR 157 >gi|152993089|ref|YP_001358810.1| hypothetical protein SUN_1502 [Sulfurovum sp. NBC37-1] gi|151424950|dbj|BAF72453.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 405 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 34/203 (16%) Query: 159 KSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKK---------ISSTLSGLVAD 209 + +D+ +++ +++ L L+ K +++L K+ I + + + Sbjct: 192 QLSDVNETVQEKDKKLLELLNALDEKETKYDTLVENLQKQKAKIKSLTGIKLKVIAALKE 251 Query: 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQK-----IGEV-----L 259 + + + + +S + +FDK S++ E L+K IG + + Sbjct: 252 ALGDKIDIDKKSGSLRLS-----SNILFDKGSAVLKDEAKAQLKKAFEEYIGTLVTNPKI 306 Query: 260 AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM------KSGVSEDRISKIS 313 + I I GHTD+ N LS RA++ L+ K + I+ Sbjct: 307 KPHLDKIIIEGHTDS---DGGYLYNLDLSQRRAFAVMHYLLTLDFAKKYNLQPLMIASGR 363 Query: 314 GFAHHRLKIASDPMNSANRRIDI 336 + + +++ RRI+I Sbjct: 364 SYLDAIKVNGVEDKDAS-RRIEI 385 >gi|16127724|ref|NP_422288.1| OmpA family protein [Caulobacter crescentus CB15] gi|221236545|ref|YP_002518982.1| cell surface antigen Sca2 [Caulobacter crescentus NA1000] gi|13425220|gb|AAK25456.1| OmpA family protein [Caulobacter crescentus CB15] gi|220965718|gb|ACL97074.1| cell surface antigen Sca2 [Caulobacter crescentus NA1000] Length = 449 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S+ PE V+ + + I + GHTD + N +LS RA + Sbjct: 347 FPFDQSVLTPEAQSVVTEAAKYSNDGKATKIIVVGHTDT---SGSPKYNAKLSERRARAV 403 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILV 338 L+ GVS++ + + +A+ NRR I + Sbjct: 404 ADALVSQGVSQN-VLGVDWKGESAPAVATGDGVKEPLNRRSTISI 447 >gi|238785957|ref|ZP_04629921.1| Outer membrane protein A [Yersinia bercovieri ATCC 43970] gi|238713147|gb|EEQ05195.1| Outer membrane protein A [Yersinia bercovieri ATCC 43970] Length = 350 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F + S PE L ++ L+ + + G D N LS Sbjct: 222 KSDVLFAFNKSTLKPEGQQALDQLYSQLSSIDPKDGSVVVLGFADRI---GQPAPNLALS 278 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ ++I+ G + P + +RR++I Sbjct: 279 QRRADSVRDYLVSKGIPAEKITA-RGEGQANPVTGNTCDNVKPRAALIECLAPDRRVEIE 337 Query: 338 VE 339 V+ Sbjct: 338 VK 339 >gi|121582538|ref|YP_974070.1| OmpA/MotB domain-containing protein [Acidovorax sp. JS42] gi|120608596|gb|ABM44335.1| OmpA/MotB domain protein [Acidovorax sp. JS42] Length = 347 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 11/197 (5%) Query: 149 RDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVA 208 + K L + ++ K P + + + A I + + L Sbjct: 153 APTPKTPMLGSTDAAPEATGKAAARPQPSVLVKLDAHTVATLAMPAEADAIPAGSAQLTD 212 Query: 209 DNIVKGVLFETTRTGILISIIDQRNTPM----FDKSSSIPLPETIVVLQKIGEVLAHSTE 264 D V+ V + + + + +TP+ F + +I + L ++ LA E Sbjct: 213 D--VQPVTVIASGPSVTTPVTETASTPLRSIPFPSAVAILNDDAKRGLSELLP-LAMKAE 269 Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 + IRG TD++ N L++ RA + GV ++ + Sbjct: 270 RVFIRGRTDST---GTVAGNRALAIARAATVRAAFASGGVDPRKLKVSYCVTCFVASNDT 326 Query: 325 DPMNSANRRIDI-LVED 340 + SANRR+++ LV Sbjct: 327 EAGRSANRRVEVELVMP 343 >gi|94501021|ref|ZP_01307545.1| peptidoglycan-associated lipoprotein, putative [Oceanobacter sp. RED65] gi|94426768|gb|EAT11752.1| peptidoglycan-associated lipoprotein, putative [Oceanobacter sp. RED65] Length = 180 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S PE VL E L + + +++ GH D R N L RA + Sbjct: 77 FGFDRSELRPEFKDVLNAHAEYLVANPQASLTVEGHCDE---RGTVEYNLALGERRAETV 133 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 + L+ GV+ ++ +S + R + + + S NRR ++ ++R Sbjct: 134 KRYLIVQGVAPSQLETVS-YGEERPAVMGSDESAWSKNRRAELDYQNR 180 >gi|85375617|ref|YP_459679.1| peptidoglycan-associated protein [Erythrobacter litoralis HTCC2594] gi|84788700|gb|ABC64882.1| peptidoglycan-associated protein [Erythrobacter litoralis HTCC2594] Length = 367 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S PE +L + T + + GH D N LS R S Sbjct: 260 FFNWDESNITPEAATILNNAVTAYANCGTASVMLAGHADR---SGPQTYNVGLSQRRNAS 316 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 + L G+ + RIS F + ++ + NRR++I Sbjct: 317 VREYLNGRGIPDARISS-EAFGESQPRVPTADGVRELQNRRVEI 359 >gi|294508280|ref|YP_003572338.1| Motility protein B [Salinibacter ruber M8] gi|294344608|emb|CBH25386.1| Motility protein B [Salinibacter ruber M8] Length = 181 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 6/69 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEV-ISIRGHTDASPF----RNIARDNWRLSLD 290 F S+ L + + I+G+TD P ++ NW LS Sbjct: 68 FPSGSAWIPDRGRRRLDEHAATIKDEYPNAGFRIQGYTDPVPIGPSLQDTYPSNWYLSAQ 127 Query: 291 RAYSAYQVL 299 RA + L Sbjct: 128 RAAAVAHYL 136 >gi|114319403|ref|YP_741086.1| OmpA/MotB domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225797|gb|ABI55596.1| OmpA/MotB domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 184 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 13/119 (10%) Query: 228 IIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNI 280 ++D P+ FD S E + V++ L+ + ++I GHTD R Sbjct: 67 LMDDPEGPLSRQTVYFDFDRSEIRNEDMPVIEAHARFLSGHPDRRMTIEGHTDE---RGS 123 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDIL 337 N L RA + ++++ +GV ED++ ++ + +++ NRR +++ Sbjct: 124 REYNLALGERRAEAVKRIMVLNGVDEDQLE-VTSYGEENPVALGSNEEAWQQNRRAELI 181 >gi|261822111|ref|YP_003260217.1| outer membrane protein A [Pectobacterium wasabiae WPP163] gi|261606124|gb|ACX88610.1| OmpA domain protein transmembrane region-containing protein [Pectobacterium wasabiae WPP163] Length = 361 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + E L ++ L+ + + G TD + N LS Sbjct: 233 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQALS 289 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ +++S G + S P + +RR++I Sbjct: 290 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 348 Query: 338 VE 339 V+ Sbjct: 349 VK 350 >gi|289207539|ref|YP_003459605.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] gi|288943170|gb|ADC70869.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix] Length = 315 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 8/101 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + + E L + + G TDA N RLS RA + Sbjct: 182 FATGSRELDSRGRETVARAAETLRTVERPRVRLVGLTDAE---GPRELNERLSRQRAEAV 238 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L+++GV D ++ +G +D +RR+DI Sbjct: 239 RAALVEAGVPGDGLTVEAGGVDPE----ADGEREGSRRVDI 275 >gi|309783317|ref|ZP_07678027.1| OmpA family protein [Ralstonia sp. 5_7_47FAA] gi|308917861|gb|EFP63548.1| OmpA family protein [Ralstonia sp. 5_7_47FAA] Length = 351 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S + E L ++ LA + E + IRG TD++ N L++ RA + Sbjct: 243 FSSSVANLNDEAKRSLSELLP-LAMTAERVLIRGRTDST---GTVAGNRALAIARAATVR 298 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI-LVED 340 + GV ++ ++ SANRR+++ LV Sbjct: 299 AAFARGGVDPRKLKVSYCVTCFVASNDTEAGRSANRRVEVELVMP 343 >gi|110589616|gb|ABG77310.1| outer membrane protein A [Acinetobacter baumannii] Length = 286 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 217 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 273 Query: 293 YSAYQVLMKS 302 S L+ Sbjct: 274 NSVKSALVNE 283 >gi|269123033|ref|YP_003305610.1| OmpA/MotB domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314359|gb|ACZ00733.1| OmpA/MotB domain protein [Streptobacillus moniliformis DSM 12112] Length = 367 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 22/198 (11%) Query: 142 HCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISS 201 S E G L S K +K + P+ ++ ++++L KI Sbjct: 192 GANASFNSRLEVGAGLGMSYTFGKDDDKPVLNAVEPIVIKEDDG-----KIRELENKIE- 245 Query: 202 TLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH 261 + ++ +N+ K E I + FD E ++ + L Sbjct: 246 -MLTMLINNMDKNRDKE---------IKEIYFISGFDSGKFTLKQEHKNIIDSLISGLKD 295 Query: 262 STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLK 321 + I + G+TD + N L L+RA S L GV ++ +GF Sbjct: 296 --KEIIVVGYTDTD---GTDKYNLNLGLNRAKSVKIYLENKGVKVKE-TRSAGFNELIRD 349 Query: 322 IASDPMNSANRRIDILVE 339 + + NRR++I+V+ Sbjct: 350 NKTSENKALNRRVEIMVK 367 >gi|307256515|ref|ZP_07538296.1| hypothetical protein appser10_5200 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864925|gb|EFM96827.1| hypothetical protein appser10_5200 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 283 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + V+ + L S E + + G+TD + N LS R Sbjct: 141 GDFLFDFDKDTLTAKGKDVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 197 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336 A L++ GV+ + I+ + G A P NRR+++ Sbjct: 198 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249 >gi|15596245|ref|NP_249739.1| outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|218892990|ref|YP_002441859.1| putative outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|254234184|ref|ZP_04927507.1| hypothetical protein PACG_00018 [Pseudomonas aeruginosa C3719] gi|254239405|ref|ZP_04932727.1| hypothetical protein PA2G_00018 [Pseudomonas aeruginosa 2192] gi|313105999|ref|ZP_07792260.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|9946962|gb|AAG04437.1|AE004537_2 probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|126166115|gb|EAZ51626.1| hypothetical protein PACG_00018 [Pseudomonas aeruginosa C3719] gi|126192783|gb|EAZ56846.1| hypothetical protein PA2G_00018 [Pseudomonas aeruginosa 2192] gi|218773218|emb|CAW29030.1| probable outer membrane protein precursor [Pseudomonas aeruginosa LESB58] gi|310878762|gb|EFQ37356.1| putative outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 293 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +P T+ L K+ ++ I + GHTD++ N +LS +RA S + S Sbjct: 187 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 G+ D++ ++ G + AS + NRR+++L R Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 283 >gi|329755858|gb|AEC04326.1| outer membrane protein A [Pasteurella multocida] Length = 348 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 292 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIPVKGNK 348 >gi|329755842|gb|AEC04318.1| outer membrane protein A [Pasteurella multocida] gi|329755852|gb|AEC04323.1| outer membrane protein A [Pasteurella multocida] Length = 358 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 245 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 301 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 302 ANYLVAKGVAQNAISA-TGHGEANPVTGNKCDSVKGRKALIACLADDRRVEIPVKGNK 358 >gi|192360106|ref|YP_001981638.1| OmpA family protein [Cellvibrio japonicus Ueda107] gi|190686271|gb|ACE83949.1| OmpA family protein [Cellvibrio japonicus Ueda107] Length = 576 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S +++ L+++ + + ++ + + + G +D+ +N LSL RA Sbjct: 477 FKDGSDQLDSKSLSDLERLVKYVEVNAPKRLQLFGFSDSE---GDKHENLALSLRRAKVV 533 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVE 339 L+K G+ G +SD NRR+++ + Sbjct: 534 EDHLIKRGIYP---LVAKGMGDEAPLASSDTEAGRHINRRVEVWIL 576 >gi|129141|sp|P04845|OMPA_SERMA RecName: Full=Outer membrane protein A; Flags: Precursor gi|758300|emb|CAA25254.1| ompA protein [Serratia marcescens] Length = 359 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 27/135 (20%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + S E L ++ L+ + + G+TDA + N +LS Sbjct: 229 KSDVLFNFNKSTLKAEGQQALDQLYTQLSSMDPKDGSVVVLGYTDAV---GSDQYNQKLS 285 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM-------------NSANRRID 335 RA S L+ G+ D+IS G + + +RR++ Sbjct: 286 EQRAQSVVDYLVSKGIPSDKISA-RGMGEADAVTGNTCGYKSGRATKAQIVCLAPDRRVE 344 Query: 336 I-------LVEDRQG 343 I +V QG Sbjct: 345 IEVKGIKDVVTQPQG 359 >gi|110806727|ref|YP_690247.1| putative outer membrane lipoprotein [Shigella flexneri 5 str. 8401] gi|110616275|gb|ABF04942.1| putative outer membrane protein [Shigella flexneri 5 str. 8401] Length = 160 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A + G G ++ + NRR+ +++ Sbjct: 109 ANVVADAWVIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|89076013|ref|ZP_01162376.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34] gi|89048248|gb|EAR53829.1| hypothetical outer membrane protein OmpA [Photobacterium sp. SKA34] Length = 355 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S L I + L + E + + GHTD+ + N +LS +RA Sbjct: 237 FAFDSYKITHADKERLAPIAKRLQDNPETELVVVGHTDS---KGAEAYNQKLSEERAQKV 293 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 LM + + R+ + G ++ NRR+D+ Sbjct: 294 ATFLMNEYNLDSSRV-RAEGRGELNPVASNKTEAGRTDNRRVDV 336 >gi|254466910|ref|ZP_05080321.1| OmpA/MotB [Rhodobacterales bacterium Y4I] gi|206687818|gb|EDZ48300.1| OmpA/MotB [Rhodobacterales bacterium Y4I] Length = 192 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%) Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPM 327 I GHTD+ R N LS RA + QV +G ++ I + ++ + Sbjct: 124 IAGHTDS---RASDEYNIGLSQRRANAVAQVARSAG---AHVNDIRAYGEREPQVPNTSA 177 Query: 328 N--SANRRIDI 336 + NRR++I Sbjct: 178 ANMAKNRRVEI 188 >gi|29829787|ref|NP_824421.1| secreted protein [Streptomyces avermitilis MA-4680] gi|29606896|dbj|BAC70956.1| putative secreted protein [Streptomyces avermitilis MA-4680] Length = 226 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 19/222 (8%) Query: 118 TNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 T ++ + + + + ++ G + S + + P Sbjct: 4 TPRRATATATATATTLTALAVLATLTLTVPSAVADDGDPSAPPGSVTTSPPPDVDANSPG 63 Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMF 237 L + K L I S + L + + + T + +F Sbjct: 64 LKLADGATLAPAKVLD-----IKSVVEDLGGEERREDTNADVT--------FALQAEVLF 110 Query: 238 DKSSSIPLPETIVVLQKIG-EVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 K S PE + I E+ + + + G TD LS RA + + Sbjct: 111 PKDSPKLNPEARSRINAIADEIKKQNATNVRVFGFTDNL---GSYAHGLTLSKKRAEAVH 167 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDI 336 L + S+D ++ G++ + + NRR+++ Sbjct: 168 DQLASALGSQDVTFEVRGYSEDYPIADNTSEQGRRKNRRVEV 209 >gi|256820385|ref|YP_003141664.1| OmpA/MotB domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581968|gb|ACU93103.1| OmpA/MotB domain protein [Capnocytophaga ochracea DSM 7271] Length = 397 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 78/241 (32%), Gaps = 13/241 (5%) Query: 90 PERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR 149 P+ N+I +D + NS T Q + N F L+ K Sbjct: 148 PQLRISNRIAFLLDASMYINSKQQLTYDTKSANGQQGFQGNHFTLTAGLNIALGK---HG 204 Query: 150 DSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVAD 209 K +LE+ + N + +A K+ K + + + D Sbjct: 205 KHADWAAASKKDELEEVAQRVANLENNVADLKSEVANKQNKMNDANGNNVPDEIESYLND 264 Query: 210 NIVKGVLF----ETTRTGILISIIDQRN-TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 N E + +I + FD +SS P + + + + + + Sbjct: 265 NYKAKDKVGENGEVKDDDVAADLIRKGYINAYFDFNSSKPQISSSWAVDFVAKYMKSNPN 324 Query: 265 -VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA 323 I+I G+ D + N LS RA + +L+K+G+ RI+ G Sbjct: 325 AHININGYADEL---GGTQYNQTLSQKRADAVKDLLVKAGIDGSRITA-EGKGVDASVDK 380 Query: 324 S 324 + Sbjct: 381 N 381 >gi|300024245|ref|YP_003756856.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526066|gb|ADJ24535.1| OmpA/MotB domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 602 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 12/117 (10%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE----VLAHSTEVI-SIRGHTDASPFRN 279 I + D F+ S P L+++ V++ + + I G+TDA Sbjct: 447 RIDLDDIN----FEFGSWEVDPGEYRKLERVARAMKRVISRNPNEVFMIEGYTDAV---G 499 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 DN LS RA S +VL + G+ LK+ + NRR+ + Sbjct: 500 SQEDNLSLSDRRAESVAEVLTEEFQVPFENLVTQGYGEDYLKVPTQAAERLNRRVAV 556 >gi|189424872|ref|YP_001952049.1| peptidoglycan-associated lipoprotein [Geobacter lovleyi SZ] gi|189421131|gb|ACD95529.1| peptidoglycan-associated lipoprotein [Geobacter lovleyi SZ] Length = 185 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 6/105 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD S ++ +L K + L I I GH D R N L RA + Sbjct: 82 FDFDRSDLRQDSRDMLTKNAQALMKDLVDSKIKIEGHCDE---RGSDEYNLALGDRRAKA 138 Query: 295 AYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILV 338 L+ GV +DRIS +S G ++ + + S NRR + ++ Sbjct: 139 VATYLITLGVKQDRISTVSFGKEKPAMQGSDETAWSKNRRAEFVI 183 >gi|146298734|ref|YP_001193325.1| OmpA/MotB domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153152|gb|ABQ04006.1| OmpA/MotB domain protein [Flavobacterium johnsoniae UW101] Length = 267 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAH--HRLKIA 323 I I G+ D R N+RLS DR + +L+ SG E +I + G R Sbjct: 57 IQIYGYCDD---RGTDDYNFRLSHDRVNTIQNLLVSSGFKESKIVILEGKGRVVVRPDTV 113 Query: 324 SD--PMNSANRRIDILVEDR 341 + NRR+D++V R Sbjct: 114 ENLYETRLRNRRVDLIVVKR 133 Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 10/112 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASP--FRNI-ARDNWR-- 286 + +FD S+ + L KI L IRGH +P + + +D Sbjct: 157 ESILFDMGSARLTHNSKRELDKIALTLLKQKNIQFEIRGHVCCTPEIYSDGIDKDTKERR 216 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 LS +RA + + L VS++R+ + G + D + RR++ L+ Sbjct: 217 LSWNRAKNVFNYLSSKKVSKNRM-RYQGCGNKFPLRMGDNYD---RRVEFLI 264 >gi|301026373|ref|ZP_07189819.1| OmpA family protein [Escherichia coli MS 69-1] gi|300395559|gb|EFJ79097.1| OmpA family protein [Escherichia coli MS 69-1] Length = 160 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|269122960|ref|YP_003305537.1| YadA domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314286|gb|ACZ00660.1| YadA domain protein [Streptobacillus moniliformis DSM 12112] Length = 2078 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 14/162 (8%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGIL----ISIIDQRNTPM--FDK 239 +++ ++L + KK+ L +N G + R I I + + + + Sbjct: 1917 IEQNEKLINQNKKLEEDNDRLRRENDRIGDEIKELRERIKAIEKIKMNEDDLYTLDGYRL 1976 Query: 240 SSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 +L I L + I I G+TD + N L L RA + Sbjct: 1977 GIHELTKSQEEMLMNIVRELNENYKNRKIYITGYTDNV---SGENLNLELGLKRANVVAK 2033 Query: 298 VLMKSGVSED---RISKISGFAHHRLKIASDPMNSANRRIDI 336 L + G+ R SG+ + S S+NRR++I Sbjct: 2034 KLRELGLDMSISIRKVSSSGYNNIVETNKSSNGRSSNRRVEI 2075 >gi|254463781|ref|ZP_05077192.1| OmpA domain protein [Rhodobacterales bacterium Y4I] gi|206684689|gb|EDZ45171.1| OmpA domain protein [Rhodobacterales bacterium Y4I] Length = 310 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 6/106 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ S+ L ++ E LA + + + GHTD N +S RA S Sbjct: 206 FESGSTRLREGRYDSLVQLAEYLAANPEYRLLLVGHTDTV---GSQEQNAGISERRAQSV 262 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILVE 339 + L+++ +E+ ++G ++ ANRR++ ++ Sbjct: 263 KERLIEAYGAEESQIGVAGAGFLAPIASNLTPEGREANRRVEAVLL 308 >gi|157962338|ref|YP_001502372.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847338|gb|ABV87837.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 249 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 20/176 (11%) Query: 171 ENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID 230 + L ++ + + L +L+ + L + + G+ + Sbjct: 78 QQTMLSEQEQQVVALNQENTSLVELSDQYEQAQQQLTTLKMAQEQKLTELALGLNVQ--- 134 Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 F SS+ P L I ++ S E + + G+ D R + N LS Sbjct: 135 ------FKTGSSVIEPHFQQQLNDIAYAMSLSPELTLDLTGYADR---RGDSDYNQALSE 185 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN----RRIDILVEDR 341 R L + GV E+R+ F +A N N RR+ + ++++ Sbjct: 186 QRVAEVKNYLTEQGVEEERLHN-QAFGDSSPLMAE--QNFENDFFDRRVTLKLQNQ 238 >gi|296108643|ref|YP_003620344.1| hypothetical protein lpa_04343 [Legionella pneumophila 2300/99 Alcoy] gi|295650545|gb|ADG26392.1| Hypothetical protein lpa_04343 [Legionella pneumophila 2300/99 Alcoy] Length = 294 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + L++I + + +VI + GH D S +N +S RA S Sbjct: 190 FGVDSKLLSDADKAQLRRIAQYVDADVQIDVIKVIGHADDS--GRKGYNN-AISQYRAES 246 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L++ GV R I+ + +D +ANRR+ + + + Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294 >gi|94496180|ref|ZP_01302758.1| OmpA/MotB [Sphingomonas sp. SKA58] gi|94424359|gb|EAT09382.1| OmpA/MotB [Sphingomonas sp. SKA58] Length = 172 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + F E LQ L + ++I GH D R N L R Sbjct: 65 DRIFFGLDQYDVDAEDQATLQSQAAWLQQNPSVRVTIEGHADE---RGTRDYNIALGERR 121 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILVE 339 A +A L G+ RI+ +S + SD + NRR + + ++ Sbjct: 122 ANAAKNYLASLGIDPGRITTVSYGKERPAALGSDEAAWAQNRRAVTVTIQ 171 >gi|184216035|gb|ACC77464.1| outer membrane protein [Lawsonia intracellularis] Length = 340 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F S + ++ ++ + + + + G TD++ N RLS +RA + Sbjct: 239 FAFDSFALDDTAKAISEETVRLIRANPDFNVRLLGWTDST---GPDAYNLRLSQERADAV 295 Query: 296 YQVLMKSGVSEDRISKISGFA-HHRLKIASDPMNSANRRIDIL 337 L+K G+ +R+ G ++ A+ NRR +++ Sbjct: 296 KNFLVKMGIPSNRLFA-KGMGKSYQYNNATKEGRYMNRRTELV 337 >gi|332999380|gb|EGK18965.1| ompA family protein [Shigella flexneri VA-6] Length = 160 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ LQ + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQLQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEGLSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|319902641|ref|YP_004162369.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108] gi|319417672|gb|ADV44783.1| OmpA/MotB domain protein [Bacteroides helcogenes P 36-108] Length = 386 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 8/158 (5%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 + + +++ + L + T+ + + F Sbjct: 235 SNVDEDALNAEINKYRSELAQAQADLANAKNALANVKPETKEVVKEVQVAGPRAIFFKIG 294 Query: 241 SSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 S+ V ++ +VL + + I G+ D + A N +LS RA + Y L Sbjct: 295 SAKIDDYGKVNIELAAKVLKANSDKKYKIAGYADKA--TGSASWNQKLSEKRAQAVYDAL 352 Query: 300 MKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 + GV +D++ + GF + +N R+ IL Sbjct: 353 IAQGVDKDQLELV-GFGGTENMFGKNFLN----RVVIL 385 >gi|260550726|ref|ZP_05824934.1| small protein A [Acinetobacter sp. RUH2624] gi|260406232|gb|EEW99716.1| small protein A [Acinetobacter sp. RUH2624] Length = 260 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD+S + + + + + + + + S I + G D P + N LS RA + Sbjct: 153 FDRSDASAIQQGLNNIDNVVDQIKQSPSTAPIIVSGFAD--PLGKFSY-NQELSSKRANT 209 Query: 295 AYQVLMKSGVSEDRI-----------SKISGFAHHRLKIASDPMNSANRRIDI 336 ++L+K GV +RI + SG + +L P NRR++I Sbjct: 210 VAKLLVKQGVDPNRIQIHANSQTDLYQQCSGGHNSQLIQCLAP----NRRVNI 258 >gi|58422901|gb|AAW73250.1| OmpA [Enterobacter cloacae] Length = 223 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 7/96 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + PE L ++ L++ + + G TD + A N +LS Sbjct: 115 KSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTD--RIGSDAY-NQKLS 171 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 RA S L+ G+ ++IS G + Sbjct: 172 EKRAQSVVDYLISKGIPANKISP-RGMGESNPVTGN 206 >gi|296282485|ref|ZP_06860483.1| hypothetical protein CbatJ_02635 [Citromicrobium bathyomarinum JL354] Length = 305 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 13/167 (7%) Query: 186 MKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRN-----TPMFDKS 240 + ++ ++D K ++ + + G ++ ID N FD Sbjct: 137 IAQRISMKDSDLKTAAMIQRGTEQGFAEQTAATEALRG-RVADIDNYNVKGTTNVYFDTG 195 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSAYQVL 299 + L + + G+TD++ N LS RA L Sbjct: 196 EYKLSGQAQAELCSAAAQADQMDNALLLVVGYTDST---GSYEINQELSEKRAERVVNYL 252 Query: 300 MKS-GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDRQG 343 + G R+ +G A ++D NRR+ + + + Sbjct: 253 QQQCGWKPYRMLTPTGMAQADPVADNSTDYGKQQNRRVAVNILVSKA 299 >gi|254495661|ref|ZP_05108581.1| outer membrane protein [Legionella drancourtii LLAP12] gi|254355112|gb|EET13727.1| outer membrane protein [Legionella drancourtii LLAP12] Length = 235 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 11/110 (10%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSL 289 MF+ S LQ I +L E + + G TD + + RLS Sbjct: 110 TDKYFMFE--SPRLNEINYKGLQNIIALLRLYPESHVYVAGFTDNVGTEDHKK---RLSQ 164 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP---MNSANRRIDI 336 +A S L +G+ R+ K G+ + +A + ++ NRRI+I Sbjct: 165 AQAESMMTYLWANGIQAQRL-KPEGYGD-KNTVADNALIHGSAMNRRIEI 212 >gi|317402473|gb|EFV83041.1| peptidoglycan-associated lipoprotein [Achromobacter xylosoxidans C54] Length = 166 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285 SI+ Q+ + FD S + +++ LA H + I I G+TD R A N Sbjct: 54 SILAQQRSVYFDFDSYTVSDQYRGLVETHARYLASHQQQKIKIEGNTDE---RGGAEYNL 110 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 L RA + +++ GVS+++I IS G + +S+ + NRR DI+ Sbjct: 111 ALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKATGSSEADFAENRRADIV 163 >gi|255035472|ref|YP_003086093.1| OmpA/MotB domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254948228|gb|ACT92928.1| OmpA/MotB domain protein [Dyadobacter fermentans DSM 18053] Length = 314 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F++S++ + L KI L+ + I++ HTD + N RL+ +RA Sbjct: 211 FEQSTTNLSKSSTKNLSKILNCLSENRSVKITLESHTDNV---GDLKKNLRLAEERAARI 267 Query: 296 YQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILVE 339 Q L+ + +SE RI +I G ++ S NRRI + V+ Sbjct: 268 RQYLVDNKISESRIQCRILGPLLPLAPNNNEYNRSLNRRIVVKVQ 312 >gi|90412653|ref|ZP_01220655.1| hypothetical protein P3TCK_08471 [Photobacterium profundum 3TCK] gi|90326461|gb|EAS42873.1| hypothetical protein P3TCK_08471 [Photobacterium profundum 3TCK] Length = 208 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 10/133 (7%) Query: 211 IVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVIS 267 + + + T +L + +Q++ FD + + +L I L H + Sbjct: 67 VTDSITYTATPDASILLAQLPEQKDVIYFDNMNYELSVKNQQLLDPIALRLKLHLDSYLI 126 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326 + GH+D +N LS +RA+S + G+ E+RI +I L + Sbjct: 127 VIGHSDD---AGSKEENLVLSFERAFSVAIYISSVFGIEEERI-QIVALGDDELISNGNS 182 Query: 327 M--NSANRRIDIL 337 NRR++++ Sbjct: 183 EQERQLNRRVEVI 195 >gi|261867947|ref|YP_003255869.1| Plp4 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413279|gb|ACX82650.1| Plp4 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 274 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 14/110 (12%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +FD + V+ K+ L S + + + G+TD N LS RA Sbjct: 144 LFDFDKDTLTVKGREVVDKVAAQLKESKAQEVKVAGYTDRL---GSKVYNMDLSQRRADR 200 Query: 295 AYQVLMKSGVSEDRISKISGFAH-HRLKIASDPMNSA-------NRRIDI 336 L++ G+ +I+ + G+ H+++ ++ +S NRR++I Sbjct: 201 VKNRLIEQGID-VQINAV-GYGEAHQVQACNNVKSSQLISCLRPNRRVEI 248 >gi|156976391|ref|YP_001447297.1| hypothetical protein VIBHAR_05164 [Vibrio harveyi ATCC BAA-1116] gi|156527985|gb|ABU73070.1| hypothetical protein VIBHAR_05164 [Vibrio harveyi ATCC BAA-1116] Length = 301 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD S PE + L L I + GHTD +++ N +L+ RA Sbjct: 188 TPHFDFDKSELKPEDLSQLDDFIAKLQGLEGSIMVAGHTD--QVGSLSY-NEQLAERRAQ 244 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRR 333 + L + ++ F + I + N+ NRR Sbjct: 245 TVVAYLKTKLDPSQFVWEVKAFGELQPVINEESPEANALNRR 286 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S V L + + I+I GHTD F+ N +LS+ RA S Sbjct: 62 FDFDKSFIREADAVSLDVFIRNIQGLSGRITIVGHTD---FKGSDEYNDKLSMRRAESVE 118 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 L + E ++ F + SD + NRR Sbjct: 119 AYLQQQLDPEQYDWEVKHFGESQPLALGKSDQDRAENRR 157 >gi|53712971|ref|YP_098963.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46] gi|60681183|ref|YP_211327.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|253563051|ref|ZP_04840508.1| major outer membrane protein OmpA [Bacteroides sp. 3_2_5] gi|265763068|ref|ZP_06091636.1| major outer membrane protein OmpA [Bacteroides sp. 2_1_16] gi|52215836|dbj|BAD48429.1| major outer membrane protein OmpA [Bacteroides fragilis YCH46] gi|60492617|emb|CAH07389.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|251946827|gb|EES87109.1| major outer membrane protein OmpA [Bacteroides sp. 3_2_5] gi|263255676|gb|EEZ27022.1| major outer membrane protein OmpA [Bacteroides sp. 2_1_16] gi|301162672|emb|CBW22219.1| putative outer membrane protein [Bacteroides fragilis 638R] Length = 372 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L +++ S L + T+ + + F Sbjct: 220 GSQVDQNAINEELNRYRSELAKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAIFFQI 279 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + + G+ D + A+ N +LS RA + Y Sbjct: 280 GKSKIDDYGMVNIQLAAKILKANPDKKYKVAGYADKA--TGSAKWNQKLSEARAQAVYDA 337 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ + GF + +N R+ IL Sbjct: 338 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 371 >gi|300727149|ref|ZP_07060568.1| putative immunoreactive 42kD antigen PG33 [Prevotella bryantii B14] gi|299775693|gb|EFI72284.1| putative immunoreactive 42kD antigen PG33 [Prevotella bryantii B14] Length = 382 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 14/152 (9%) Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 + +L L ++ + + + + + + + + F+ + Sbjct: 240 QSQLDALNSQLED--ANAENERLRGELEAKQSNQTSSVVYKSAPVSVFFNIGKTKIASSK 297 Query: 249 IVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 +V L+ + + I + G+ D+ A N +LS RA + + L+K GV + Sbjct: 298 DMVNLESFAKSAKENNNKILVTGYADSK--TGSAEYNQKLSQSRADAVVEALVKFGVDKS 355 Query: 308 RI-SKISGFAHHRLKIASDPMNSANRR--IDI 336 I ++ G + + NRR ++I Sbjct: 356 MITTQAKGGVDDLSPVDN------NRRATVEI 381 >gi|262396480|ref|YP_003288333.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp. Ex25] gi|262340074|gb|ACY53868.1| putative sodium-type flagellar protein MotY precursor [Vibrio sp. Ex25] Length = 339 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLA--HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 FD + + L + ++ I I GHTD + N +S RA Sbjct: 211 FDFGQKVLSRKQQETLAALNSYVSVDDRVTKILIDGHTDNV---GSSLANLSVSRTRAEQ 267 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDI 336 + L++ G+ + + + +++ + NRR+ + Sbjct: 268 VAEALVELGIDKS-MIETRAHGSRYPIASNNSTKGQAKNRRVTL 310 >gi|74318223|ref|YP_315963.1| outer membrane protein, porin-associated lipoprotein [Thiobacillus denitrificans ATCC 25259] gi|74057718|gb|AAZ98158.1| outer membrane protein, porin-associated lipoprotein [Thiobacillus denitrificans ATCC 25259] Length = 188 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289 + + FD S + E VL+ LA I+++G+ D R N L Sbjct: 79 SKRSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGNADE---RGSREYNLALGQ 135 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 RA + + L GVS+ ++ IS F + + +D + NRR DI+ Sbjct: 136 KRAEAVRKALAVLGVSDAQMEAIS-FGEEKPRNEADTEEAYAENRRTDIV 184 >gi|296283270|ref|ZP_06861268.1| hypothetical protein CbatJ_06596 [Citromicrobium bathyomarinum JL354] Length = 168 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Query: 226 ISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDN 284 + ++ +N FD LQ + ++ + ++I GH D R N Sbjct: 55 VRAVNGQNVIYFDTDRYNIDTADAAALQTQAQYMSQYPNITVTIEGHADE---RGTREYN 111 Query: 285 WRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR-IDILV 338 L RA SA L+ G++ +RI +S + AS P + NRR + ++V Sbjct: 112 LALGERRANSAKNYLVSLGIAANRIRTVSYGEERPVATASTPEAWAKNRRAVTVVV 167 >gi|284922551|emb|CBG35638.1| outer membrane lipoprotein [Escherichia coli 042] Length = 160 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|134288289|ref|YP_001110452.1| OmpA/MotB domain-containing protein [Burkholderia vietnamiensis G4] gi|134132939|gb|ABO59649.1| OmpA/MotB domain protein [Burkholderia vietnamiensis G4] Length = 202 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 15/117 (12%) Query: 220 TRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN 279 T G + + + N S+IP L I I + GH D Sbjct: 93 TEQGNRVVLHYRFN-------SAIPTSWA--PLSSIVTRARGDDSPIKVVGHADEV---G 140 Query: 280 IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 N RLS+ RA + L+ GV+ +RI G + NRR+ I Sbjct: 141 GDDYNQRLSVRRATAVSNYLVAKGVARNRIES-EGHGKREPVSPG--AGAQNRRVVI 194 >gi|303250252|ref|ZP_07336452.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252017|ref|ZP_07533917.1| hypothetical protein appser6_5360 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650868|gb|EFL81024.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860486|gb|EFM92499.1| hypothetical protein appser6_5360 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 283 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + V+ + L S E + + G+TD + N LS R Sbjct: 141 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 197 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336 A L++ GV+ + I+ + G A P NRR+++ Sbjct: 198 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249 >gi|126207944|ref|YP_001053169.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae L20] gi|165975919|ref|YP_001651512.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149806|ref|YP_001968331.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245299|ref|ZP_07527387.1| hypothetical protein appser1_5040 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254248|ref|ZP_07536089.1| hypothetical protein appser9_4990 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258710|ref|ZP_07540442.1| hypothetical protein appser11_5080 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260944|ref|ZP_07542627.1| hypothetical protein appser12_5120 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263126|ref|ZP_07544747.1| hypothetical protein appser13_5480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096736|gb|ABN73564.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876020|gb|ABY69068.1| lipoprotein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914937|gb|ACE61189.1| lipoprotein Plp4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853640|gb|EFM85857.1| hypothetical protein appser1_5040 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862795|gb|EFM94748.1| hypothetical protein appser9_4990 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867061|gb|EFM98917.1| hypothetical protein appser11_5080 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869356|gb|EFN01150.1| hypothetical protein appser12_5120 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871488|gb|EFN03211.1| hypothetical protein appser13_5480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 283 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + V+ + L S E + + G+TD + N LS R Sbjct: 141 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 197 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336 A L++ GV+ + I+ + G A P NRR+++ Sbjct: 198 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 249 >gi|110638196|ref|YP_678405.1| outer membrane protein 3a [Cytophaga hutchinsonii ATCC 33406] gi|110280877|gb|ABG59063.1| outer membrane protein 3a [Cytophaga hutchinsonii ATCC 33406] Length = 903 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 7/106 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S PE L ++ + + I + +TD N LS R +A Sbjct: 564 FDFNQSDLRPEAKKTLDELAAYSNKNPQIQIELNANTDGL---GTDTYNRALSEKRGQAA 620 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVE 339 L+ GV RI + R ++D NRR++ + Sbjct: 621 IDYLIGKGVDHSRIVM-NPLGKERPLTSNDNEVGRQLNRRVEFYIL 665 >gi|94497343|ref|ZP_01303914.1| OmpA/MotB [Sphingomonas sp. SKA58] gi|94423206|gb|EAT08236.1| OmpA/MotB [Sphingomonas sp. SKA58] Length = 358 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQ-KIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ S P+ +L + + + + + GH D A N LS RA S Sbjct: 251 FFEWDKSDITPDAATILDNAVSAYSSCGSAQVMLAGHADK---SGSASYNVGLSQRRADS 307 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L G+ + + F R ++ + NRR++I Sbjct: 308 VKAYLASKGIPDG-VMTTEAFGESRPRVETADGVREVQNRRVEI 350 >gi|53728845|ref|ZP_00134888.2| COG2885: Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 294 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + V+ + L S E + + G+TD + N LS R Sbjct: 152 GDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGYTDRL---GSEKYNLDLSQRR 208 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA-------NRRIDI 336 A L++ GV+ + I+ + G A P NRR+++ Sbjct: 209 ANMVKARLVQQGVTAN-INAVGYGKAQQVKACDGIPHGQELKDCLRPNRRVEV 260 >gi|90407927|ref|ZP_01216101.1| hypothetical protein PCNPT3_06126 [Psychromonas sp. CNPT3] gi|90310941|gb|EAS39052.1| hypothetical protein PCNPT3_06126 [Psychromonas sp. CNPT3] Length = 304 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ S + L LA I I GHTD + A N L+ RA + Sbjct: 189 FEFDKSQLAEKDKKTLDAFINKLAGLNGRILIAGHTD---IQGAADYNQALATFRARAVE 245 Query: 297 QVLMKSGVSEDR-ISKISGFAHHRLKI--ASDPMNSANRR 333 + L ++ + + I +++ F + + N++NRR Sbjct: 246 KYL-RNKLDASQFIWEVTSFGESKPIDVKHNALANASNRR 284 Score = 40.2 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + + I+I GHTD + + N LS RA + Sbjct: 60 FKFDKYDLQASDQASIDLFIREIKDLKGRIAIVGHTD---VQGSLKYNVHLSAQRAQTIK 116 Query: 297 QVLMKSGVSEDRISKISGFAHHRLK 321 L K ++ +I + + Sbjct: 117 DYLSKQLEVKNYDWEIKYYGETKPL 141 >gi|15618690|ref|NP_224976.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae CWL029] gi|15836314|ref|NP_300838.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae J138] gi|16752260|ref|NP_445628.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae AR39] gi|33242140|ref|NP_877081.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila pneumoniae TW-183] gi|4377090|gb|AAD18919.1| Peptidoglycan-Associated Lipoprotein [Chlamydophila pneumoniae CWL029] gi|7190005|gb|AAF38862.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae AR39] gi|8979154|dbj|BAA98989.1| peptidoglycan-associated lipoprotein [Chlamydophila pneumoniae J138] gi|33236650|gb|AAP98738.1| peptidoglycan-associated lipoprotein precursor [Chlamydophila pneumoniae TW-183] Length = 192 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 237 FDKSSSIPLPET-IVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S E + +L + + + + + I GHTD R A N L RA + Sbjct: 88 FATDSYTIKGEENLAILTNLVHYMKKNPKATLYIEGHTDE---RGAASYNLALGARRANA 144 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDILVEDR 341 + L K G+S DR+S IS H L + + NRR + + R Sbjct: 145 IKEHLRKQGISADRLSTISYGKEHPLNSGHNELAWQQNRRTEFKIHAR 192 >gi|325285434|ref|YP_004261224.1| OmpA/MotB domain-containing protein [Cellulophaga lytica DSM 7489] gi|324320888|gb|ADY28353.1| OmpA/MotB domain protein [Cellulophaga lytica DSM 7489] Length = 645 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + P+ + +QK+ + I + HTD+ + + W LS RA + Sbjct: 538 FDLNKFDIRPDAEIEIQKVIVAMEKFPSLKIKVNSHTDSR--GKDSYNLW-LSQKRAEAT 594 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS-------ANRRIDILV 338 ++ G+ R+ + GF +L + NRR + ++ Sbjct: 595 VNYMISKGIDASRL-QGEGFGETKLVNKCENGVPCTVKEHQLNRRSEFII 643 >gi|291278013|gb|ADD91481.1| outer mebrane protein A [Riemerella columbina] gi|291278015|gb|ADD91482.1| outer mebrane protein A [Riemerella columbina] Length = 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F+ + + PE+ L + +++ + + GHTDA + A N RLS +RA S Sbjct: 244 FFNFNKASIRPESNGKLDQAADIIKSSNGGTFLVTGHTDA---KGNANYNLRLSRERAAS 300 Query: 295 AYQVLMKSGVSEDRI-SKISGFAH 317 L GVS ++ S+ G A Sbjct: 301 VVAALEARGVSSSQLKSRGVGSAE 324 >gi|255008471|ref|ZP_05280597.1| putative outer membrane protein [Bacteroides fragilis 3_1_12] gi|313146200|ref|ZP_07808393.1| major outer membrane protein OmpA [Bacteroides fragilis 3_1_12] gi|313134967|gb|EFR52327.1| major outer membrane protein OmpA [Bacteroides fragilis 3_1_12] Length = 372 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L +++ S L + T+ + + F Sbjct: 220 GSQVDQNAINEELNRYRSELAKAQSDLADAKNALANVKPVTKEVVKEVEVAGPRAIFFQI 279 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + + G+ D + A+ N +LS RA + Y Sbjct: 280 GKSKIDDYGMVNIQLAAKILKANPDKKYKVAGYADKA--TGSAKWNQKLSEARAQAVYDA 337 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ + GF + +N R+ IL Sbjct: 338 LIKEGVSKDQLELV-GFGGTANMFGKNFLN----RVVIL 371 >gi|313498243|gb|ADR59609.1| OmpA/MotB domain protein [Pseudomonas putida BIRD-1] Length = 435 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDA--SPFRNIARDNWRLSLDR 291 F + S+ + + +Q++ E L + + G D +P R LS R Sbjct: 334 FQEGSASLDNKALRDVQRVTEYLRQAGKLQGKAVLVGFGDPKETPGRAAL-----LSRLR 388 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSANRRIDILV 338 A + + L + GV + +++G + + NRR+++ V Sbjct: 389 AQAVRRELARGGVE---VLQVTGMGDELPVAGNELEQGRLRNRRVEVWV 434 >gi|288919975|ref|ZP_06414296.1| OmpA/MotB domain protein [Frankia sp. EUN1f] gi|288348628|gb|EFC82884.1| OmpA/MotB domain protein [Frankia sp. EUN1f] Length = 212 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVI 266 +AD + E ++++I +F S+ + K+ + TE + Sbjct: 77 LADAVSPLHTEERRDDQVVVTISAD---VLFAFDSADLTDVARAEITKLAPRVRPGTETV 133 Query: 267 SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAH-----HRL 320 ++ GHTD N LS RA + VL + R+S G A Sbjct: 134 TVLGHTDKL---GTPAYNVMLSQRRADAVAGVLRSLLPAGTRVSATGRGGADPVTPNSHP 190 Query: 321 KIASDP-MNSANRRIDI 336 + DP + NRR+ I Sbjct: 191 DGSDDPDGRALNRRVQI 207 >gi|153952261|ref|YP_001398613.1| flagellar motor protein MotB [Campylobacter jejuni subsp. doylei 269.97] gi|152939707|gb|ABS44448.1| putative chemotaxis protein MotB [Campylobacter jejuni subsp. doylei 269.97] Length = 247 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 9/165 (5%) Query: 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL 76 + KK + P W + YADF+++L+A F+ +W I+ T+ +A++ F Sbjct: 1 MAKKHKCPECPA-GEKWAVPYADFLSLLLALFIALWAISKTNPAKVEALKTEFVKIFDYT 59 Query: 77 MTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSN 136 T Q E S K + + LK + Q++ +RL+ + N Sbjct: 60 ST--------QTVKEESKTQKKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQSDN 111 Query: 137 SQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKE 181 S D K + + Y P E Sbjct: 112 QIALNLPSKVEFERSSAQIVSADIQDYLKRMAELTTYLPPQAKIE 156 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 29/185 (15%) Query: 155 KDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG 214 + + + + +K L K + M +++ ++ L + + +A N+ Sbjct: 62 QTVKEESKTQKKYKGAAKEESDELKSLKQMTMTQQETIKRLQAALDQS-DNQIALNLPSK 120 Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSI-PLPETIVVLQKIGEVLAHST--EVISIRGH 271 V F++SS+ + L+++ E+ + I IRG+ Sbjct: 121 VE--------------------FERSSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY 160 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSAN 331 TD S + L+ RA + + ++ G + I I + + +P N Sbjct: 161 TDNSDSIIRSY---ELAYQRAENVLKYFIEGGANLKNI-SIKSYGLNNPING-NPQALEN 215 Query: 332 RRIDI 336 R++I Sbjct: 216 NRVEI 220 >gi|308048254|ref|YP_003911820.1| hypothetical protein Fbal_0532 [Ferrimonas balearica DSM 9799] gi|307630444|gb|ADN74746.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799] Length = 3058 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAH-STEVISIRGHTDASPFRNIARD 283 ++ +F S+ VVLQ + E LA + + I GH ++P + Sbjct: 2935 RTEAMELELVLLFANDSATIPATYDVVLQNLSEQLAPLADYQVVIEGH-ASAPASSRY-- 2991 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRRIDILV 338 N LS RA + + L + GV I+ ++ +A + ++ NRR ++V Sbjct: 2992 NLSLSERRAQAVGEALNQRGVESANITYVA-RGEEMPAVAGNTEHAYGQNRRAVVMV 3047 >gi|331674046|ref|ZP_08374808.1| YfiB [Escherichia coli TA280] gi|331068785|gb|EGI40178.1| YfiB [Escherichia coli TA280] Length = 160 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 + +F K+ LPE+ +Q + LA + + GHTD N LSL R Sbjct: 52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A G G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159 >gi|237729519|ref|ZP_04560000.1| OmpA family protein [Citrobacter sp. 30_2] gi|226908125|gb|EEH94043.1| OmpA family protein [Citrobacter sp. 30_2] Length = 160 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 6/111 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 +T +FDK+ PE+ ++++ LA + + GHTD N LSL R Sbjct: 52 DTILFDKNDYKLRPESEKQIKEMASKLAATGLNHARLDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 A + G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAQGANIPRTNLTTQGLGKKYPIASNQTSKGRAENRRVAVVITT 159 >gi|116255792|ref|YP_771625.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260440|emb|CAK03544.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 649 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 13/107 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + S Q++ E L I + GHTD R N +LS RA + Sbjct: 544 FDFNKSSFTSIGTEAAQELLEALKEQKPGRIILVGHTDR---RGGDDYNQKLSERRAQAV 600 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS-------DPMNSANRRID 335 L +G+ G + D +++ NRR++ Sbjct: 601 ADFLKSNGLDAT--IDAEGRGASEPVDVTATANLTEDDVDALNRRVE 645 >gi|37525710|ref|NP_929054.1| outer membrane protein A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785139|emb|CAE14068.1| Outer membrane protein A precursor (Outer membrane protein II*) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 368 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 17/124 (13%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 R+ +F+ +SS E L ++ LA+ + + G+TD N +LS Sbjct: 237 RSDVLFEFASSELKAEGKHNLDQLYTELANIDPNQGKVLVLGYTDRI---GKDVYNQKLS 293 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSAN--------RRIDILV 338 RA S L+ G+ IS G S D ++ N RR++I + Sbjct: 294 QKRAQSVVDYLVSKGIPSGSISA-EGHGKANPVTGSTCDKVHKPNLINCLAPDRRVEIEI 352 Query: 339 EDRQ 342 + + Sbjct: 353 QGTK 356 >gi|239787605|emb|CAX84073.1| OmpA/MotB domain protein [uncultured bacterium] Length = 263 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 13/161 (8%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 ++ + ++ +L + +++ S S L + +G+ + G L+ + +F + Sbjct: 84 QEAIEFEQAVQLVRIKERLESMQSRLPS---AQGLEVKPVEEGFLVRLS---RAALFPEG 137 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHT-DAS-PFRNIARDNWRLSLDRAYSAYQV 298 S PE + +L+++ E+ A + I H DA P W L+ A + Sbjct: 138 SLAIRPEALPLLKQMAELFAKLPNTVRIDSHAGDARLPVAAPVTSLWALTAAEAATLADY 197 Query: 299 LM-KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 + G+ R+ +G R + S I+IL+ Sbjct: 198 FVTAGGLDPARLVA-TGHHPSRDSASGGTRGSG---IEILL 234 >gi|238897411|ref|YP_002923088.1| pal protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465166|gb|ACQ66940.1| pal protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 173 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGE-VLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD P +L + +L + + + I GHTD + N L RA + Sbjct: 73 FDFDKYNIKPNFAEILNAHADFLLNNPSFKVDIEGHTDQ---SGTSEYNMALGERRANAV 129 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRR 333 L GVS ++S +S + ++ + S NRR Sbjct: 130 KMYLQGKGVSAQQMSIVSYGKEKPVYRGNNKEDYSQNRR 168 >gi|91787861|ref|YP_548813.1| OmpA/MotB [Polaromonas sp. JS666] gi|91697086|gb|ABE43915.1| OmpA/MotB [Polaromonas sp. JS666] Length = 180 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S + PE +++ L A+ ++I GHTD R N L R+ + Sbjct: 79 FDFDSYVIKPEFQGIVEAHARYLTANKARKMAIEGHTDE---RGGREYNLALGQRRSEAV 135 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDI 336 + L GV++ ++ +S F + + + + NRR +I Sbjct: 136 RRALGLLGVADAQVEAVS-FGKEKPAATGSDEDSMAKNRRAEI 177 >gi|308273805|emb|CBX30406.1| hypothetical protein N47_Q17290 [uncultured Desulfobacterium sp.] Length = 185 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ E+ ++ I + + I + GHTD N+ LS+ RA + Sbjct: 84 FDFDSNNLTAESNKLIDDILQAIKERDSQDIPVVGHTDR---AGNPDYNFSLSMQRATAV 140 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA 330 +L+ G+ + +IS I + + Sbjct: 141 RDLLVNRGIKSE-FIQISSHGEGNPLIPTADNVAE 174 >gi|37704652|gb|AAR01598.1| OprF [Pseudomonas sp. MFY140] Length = 320 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ P + ++ + + + + + GHTD+ N +LS A + Sbjct: 237 FDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSV---GPDAYNQKLSERLANAV 293 Query: 296 YQVLM-KSGVSEDRISKISGFAHHRLKI 322 QVL + GV R+ + G+ R Sbjct: 294 KQVLTNQYGVEASRVQSV-GYGESRPVA 320 >gi|330827372|ref|YP_004390610.1| OmpA/MotB domain-containing protein [Alicycliphilus denitrificans K601] gi|329312680|gb|AEB87094.1| OmpA/MotB domain protein [Alicycliphilus denitrificans K601] Length = 351 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F S + E L ++ LA + E + IRG TD++ N L++ RA + Sbjct: 243 FSSSVANLNDEAKRNLSELLP-LAMTAERVLIRGRTDST---GTVAGNRALAIARAATVR 298 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 + GV ++ ++ SANRR+++ Sbjct: 299 AAFARGGVDPRKLKVSYCVTCFVASNDTEAGRSANRRVEV 338 >gi|312114255|ref|YP_004011851.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219384|gb|ADP70752.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 213 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 8/100 (8%) Query: 241 SSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 S++ + + + + +G L + I GHTDA R N LS RA + Sbjct: 98 SALTMSDAQITVDTLGRALNDPRLARSRFMIIGHTDA---RGGDGYNLGLSQRRANAVAA 154 Query: 298 VLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 L V+ +R+ G LK P+ NRR+ I Sbjct: 155 RLRDFHAVAANRLVA-EGRGMRELKDPVRPLGGINRRVQI 193 >gi|271499765|ref|YP_003332790.1| peptidoglycan-associated lipoprotein [Dickeya dadantii Ech586] gi|270343320|gb|ACZ76085.1| peptidoglycan-associated lipoprotein [Dickeya dadantii Ech586] Length = 168 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 5/112 (4%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282 + + + + N FD P+ +L L + ++I GH D R Sbjct: 55 LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTIEGHADE---RGTPE 111 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 N L RA + L GVS D+IS +S G + + S NRR Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163 >gi|242238603|ref|YP_002986784.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya dadantii Ech703] gi|242130660|gb|ACS84962.1| peptidoglycan-associated lipoprotein [Dickeya dadantii Ech703] Length = 168 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282 + + + + N FD P+ +L L + +++ GH D R Sbjct: 55 LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTVEGHADE---RGTPE 111 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 N L RA + L GVS D+IS +S G + + S NRR Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163 >gi|157963679|ref|YP_001503713.1| OmpA/MotB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848679|gb|ABV89178.1| OmpA/MotB domain protein [Shewanella pealeana ATCC 700345] Length = 404 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNW 285 +++ + T +++ S +QK+ + + + I++ GHT A N Sbjct: 287 RVVEMKLTVLYENDSDKIDLSNTDKIQKLADFIEQYDIKQITVFGHTSAV---GSQAYNQ 343 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 +LS RA S ++L I K G P NRRI++ + Sbjct: 344 KLSERRAASVAEMLAADFNIATGIIKAVGKGESEPISHI-PE--QNRRIEVYL 393 >gi|94499552|ref|ZP_01306089.1| hypothetical protein RED65_00925 [Oceanobacter sp. RED65] gi|94428306|gb|EAT13279.1| hypothetical protein RED65_00925 [Oceanobacter sp. RED65] Length = 1644 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 27/198 (13%) Query: 153 KGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIV 212 K D+ + S+ + E+ + + K + D AK++ + V+D+ Sbjct: 519 KADDIVGTPIDALSLVNSIKEIVDVYEDEEKSSARYKSLMLDYAKQVQMVVRTEVSDSEK 578 Query: 213 K------------GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260 + V E G + ++ F S P+ + E+ Sbjct: 579 QKAKEKIIEFKNQHVYVEKKPDGDVYNLFVT-----FAFDRSQFKPD--NSFEDFKELFN 631 Query: 261 HSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +++ GHT + N LSL RA S + L S +R+ + G Sbjct: 632 SLPSSTKLTLIGHTCS--IGTAEY-NLGLSLRRAESVRKALGFSDKDSERVF-VEGRGMT 687 Query: 319 RLK--IASDPMNSANRRI 334 +++ NRR+ Sbjct: 688 DPAYDNSTEAGRQKNRRV 705 >gi|92118969|ref|YP_578698.1| OmpA/MotB [Nitrobacter hamburgensis X14] gi|91801863|gb|ABE64238.1| OmpA/MotB [Nitrobacter hamburgensis X14] Length = 164 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 9/105 (8%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLSLD 290 + F+ + P+ I L+K L + +I GH D R N L Sbjct: 56 DRVFFESDQTNLSPQAITTLEKQARWL-QTYNRYSFTIEGHADE---RGTREYNIALGAR 111 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 RA + L G++ R+ IS + R + ++ S NRR Sbjct: 112 RAQTVRSFLASRGINPSRMRTIS-YGKERPVAVCNDISCWSQNRR 155 >gi|312897410|ref|ZP_07756834.1| OmpA family protein [Megasphaera micronuciformis F0359] gi|310621471|gb|EFQ05007.1| OmpA family protein [Megasphaera micronuciformis F0359] Length = 397 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F P+ L V + + G+TDA R N LS R + Sbjct: 295 FAFDVDTPIAYDQGKLDHFVAVAKEYPHDMFKLVGNTDA---RGTDAYNDDLSKRRVVNV 351 Query: 296 YQVLMKSGVSEDRI-SKISGFAHHRLKIASDPMNSANRRIDI 336 + + GV+ +++ G A+D + NRR+DI Sbjct: 352 ARYAVDHGVNPEQLELSYEGKNDPVATNATDQGRADNRRVDI 393 >gi|15965621|ref|NP_385974.1| hypothetical protein SMc00141 [Sinorhizobium meliloti 1021] gi|15074802|emb|CAC46447.1| Hypothetical protein SMc00141 [Sinorhizobium meliloti 1021] Length = 671 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 237 FDKSSSIPL----PETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 F S+ V + + +VL I GHTDA + N LS +R Sbjct: 557 FATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAV---GADQSNLVLSDER 613 Query: 292 AYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A S +L + G+ + + G+ LKI +D NRR+ I Sbjct: 614 AESVAVLLTEVYGIPAENLV-TQGYGERFLKIRTDGPEQENRRVTI 658 >gi|85714482|ref|ZP_01045470.1| OmpA/MotB [Nitrobacter sp. Nb-311A] gi|85698929|gb|EAQ36798.1| OmpA/MotB [Nitrobacter sp. Nb-311A] Length = 318 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-----TEVISIRGHTDASPFRNIARDNWRLSLDR 291 F+ S + LQ I + + + +EV I GHTDA DN LS R Sbjct: 197 FETGSWDIPDDQAAKLQVIADGINRAISRNPSEVFLIEGHTDAV---GNDVDNLSLSDRR 253 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRID 335 A SA ++L + G+ LK+ +D + NRR+ Sbjct: 254 AQSAAELLTQQFQVPPENLVTQGYGEQNLKVQTDGPSRENRRVT 297 >gi|197106106|ref|YP_002131483.1| OmpA family protein [Phenylobacterium zucineum HLK1] gi|196479526|gb|ACG79054.1| OmpA family protein [Phenylobacterium zucineum HLK1] Length = 178 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 7/103 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 F S + E VLQ L + I G+ D R N L R Sbjct: 68 ERVYFALDSDLLDAEARSVLQLQAAWLQRNPTVRARIEGNADE---RGTREYNLALGARR 124 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 A +A Q L++SGV R+ IS + R + NR Sbjct: 125 AQAARQFLIRSGVDSTRLETIS-YGKERPIDPGSTEEAWARNR 166 >gi|307611849|emb|CBX01563.1| hypothetical protein LPW_32501 [Legionella pneumophila 130b] Length = 294 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + V L++I + + +VI I GH D S +N +S RA S Sbjct: 190 FGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDS--GRKGYNN-AISQYRAES 246 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L++ GV R I+ + +D +ANRR+ + + + Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294 >gi|298385171|ref|ZP_06994730.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14] gi|298262315|gb|EFI05180.1| major outer membrane protein OmpA [Bacteroides sp. 1_1_14] Length = 365 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 ++++ + F +S+ + + ++ E L + + + G+ D + +R Sbjct: 256 VVTVQPMKQDIFFALNSARIQDDQKSKIDELAEYLQKNPSAKVQVTGYADVN--TGNSRI 313 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILV 338 N LS RA + L G+S DRI I + R+ I + Sbjct: 314 NKTLSDKRAVNVADALKTKGISTDRII-IDSKGDTVQPYKT----PEENRVSICI 363 >gi|148979316|ref|ZP_01815448.1| hypothetical protein VSWAT3_05151 [Vibrionales bacterium SWAT-3] gi|145961856|gb|EDK27148.1| hypothetical protein VSWAT3_05151 [Vibrionales bacterium SWAT-3] Length = 322 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 5/108 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + L E + I+I GHTD ++ N RLS RA S Sbjct: 62 FAFDKYKLRDLDKINLDTFVEEIRGLKGRITIVGHTD---YKGSLEYNQRLSQRRAKSVA 118 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDRQ 342 L + ++ + + +D + NRR I+ E+ Q Sbjct: 119 DYLKAYLDPTNYDWEVKHLGETQPLLLGKTDKDRAENRRAFIVFEEAQ 166 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD S+ PE + L L+ I + GHTD N +L+ RA Sbjct: 188 TPHFDFDKSVLKPEDLTQLDDFASQLSGLQGNIMVAGHTDQ---AGSVSYNEKLAERRAE 244 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 + + L + I ++ F + I S+ ++ NRR Sbjct: 245 TVVKYLKTKLNPKQFIWEVKSFGKLQPAINERSEKADALNRR 286 >gi|54295802|ref|YP_128217.1| hypothetical protein lpl2892 [Legionella pneumophila str. Lens] gi|53755634|emb|CAH17136.1| hypothetical protein lpl2892 [Legionella pneumophila str. Lens] Length = 294 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST--EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F S + V L++I + + +VI I GH D S +N +S RA S Sbjct: 190 FGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDS--GRKGYNN-AISQYRAES 246 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 L++ GV R I+ + +D +ANRR+ + + + Sbjct: 247 VKNYLIRLGV-PQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK 294 >gi|153808398|ref|ZP_01961066.1| hypothetical protein BACCAC_02692 [Bacteroides caccae ATCC 43185] gi|149128720|gb|EDM19937.1| hypothetical protein BACCAC_02692 [Bacteroides caccae ATCC 43185] Length = 274 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 215 VLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTD 273 V+ ++ I + + F +S+ E + + E L + I I G+ D Sbjct: 155 VVEQSKPKEDKIVVEPMKQNIFFALNSARIQDEQQQKISSLVEYLEKNPAAKICITGYAD 214 Query: 274 ASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 + A N++LS RA + + L G++ DRI K+ ++ R Sbjct: 215 VN--TGNATINFKLSEARAKNVAEALKSKGIAADRI-KVDFKGDTVQPYST----PKENR 267 Query: 334 IDILVED 340 + I + + Sbjct: 268 VSICITE 274 >gi|84502672|ref|ZP_01000791.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola batsensis HTCC2597] gi|84389067|gb|EAQ01865.1| Outer membrane protein, OmpA/MotB family protein [Oceanicola batsensis HTCC2597] Length = 681 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 85/263 (32%), Gaps = 15/263 (5%) Query: 70 NPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQ-RLE 128 N KN D + K+ + D + + D+K + + Sbjct: 404 NEILKNGSEVVSNSGDRVVVQQPDGSYKVYRNDDVLMFQPGTDVKTYAYDDGSTRTVATR 463 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 ++ + + ++ TR G+++ D S E N + + Sbjct: 464 DDGVTIETIRAADGTVLRRTRILPDGQEVVLFDDTRDSQEVEVNELPQVTDTRNRIDFQS 523 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISI-IDQRNTPMFDKSSSIPLPE 247 + + A + + + V ++ I +D N F+ S++ P Sbjct: 524 AQEDELRAALQARAPEAVDRRFSLSQVRNINAVRQLVPEIDVDNIN---FETGSAVIRPA 580 Query: 248 TIVVLQKIGEVLAHS----TEVI-SIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 L ++G+++ I I GHTDA N LS RA S L + Sbjct: 581 EAEELARLGQLMRERIEENPGEIFLIEGHTDAV---GSGSYNLALSDRRAESVALALTEY 637 Query: 303 -GVSEDRISKISGFAHHRLKIAS 324 V + + I G+ LK+ + Sbjct: 638 FDVPPENMV-IQGYGETDLKVRT 659 >gi|110636551|ref|YP_676758.1| outer membrane peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC 33406] gi|110279232|gb|ABG57418.1| outer membrane protein, peptidoglycan-associated lipoprotein [Cytophaga hutchinsonii ATCC 33406] Length = 656 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 225 LISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 I I+ ++D P+ V L + ++ + E I + HTD R A Sbjct: 532 RIVIV---RNILYDYDKWDIRPDAAVELDTMVMLMNANPEIQIELGSHTDE---RGSAEY 585 Query: 284 NWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS---ANRRIDILVED 340 N L+ RA +A ++ G+S+DRI G+ I + + NRR V + Sbjct: 586 NRVLAQKRAQAAVDYIIAHGISKDRIIA-KGYGEDEPAIRNAKTEADHQTNRRTTFKVLN 644 >gi|311103960|ref|YP_003976813.1| peptidoglycan-associated lipoprotein [Achromobacter xylosoxidans A8] gi|310758649|gb|ADP14098.1| peptidoglycan-associated lipoprotein [Achromobacter xylosoxidans A8] Length = 166 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNW 285 SI+ Q+ + FD S + +++ + LA H + I I G+TD R A N Sbjct: 54 SILAQQRSVYFDFDSYTVSDQYRSLVETHAKYLASHQQQTIKIEGNTDE---RGGAEYNL 110 Query: 286 RLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 L RA + +++ GVS+++I IS G + S+ + NRR DI+ Sbjct: 111 ALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKSTGTSEADFAENRRADIV 163 >gi|82523947|emb|CAI78669.1| OmpA protein [uncultured delta proteobacterium] Length = 408 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F + + L+ + ++ I I GHTD + N + SL+RA + + Sbjct: 305 FGMNELAMNEAALAELKVFYNKVKDASGKIVIEGHTDG---HGDSAANLKASLERAVNTW 361 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 + L G+S+ ++ G + ++ NRR+++ Sbjct: 362 RKLQSMGLSDKIKVELRGVGGSKPVADNNTQEGRDKNRRVEL 403 >gi|110589614|gb|ABG77309.1| outer membrane protein A [Acinetobacter baumannii] Length = 273 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRA 292 FD + S + + K+ E L+ I GHTD + + N RLSL RA Sbjct: 210 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNT---GPRKLNERLSLARA 266 Query: 293 YSAYQVL 299 S L Sbjct: 267 NSVKSAL 273 >gi|107100492|ref|ZP_01364410.1| hypothetical protein PaerPA_01001517 [Pseudomonas aeruginosa PACS2] Length = 281 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +P T+ L K+ ++ I + GHTD++ N +LS +RA S + S Sbjct: 175 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 231 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 G+ D++ ++ G + AS + NRR+++L R Sbjct: 232 GLKGDQL-RLKGVGSDMPRADNASAAGRAQNRRVEVLYTQR 271 >gi|88857215|ref|ZP_01131858.1| ompA family protein [Pseudoalteromonas tunicata D2] gi|88820412|gb|EAR30224.1| ompA family protein [Pseudoalteromonas tunicata D2] Length = 580 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F+ + L ++ E + + + + G++D+ N +LSL+RA + Sbjct: 481 FNYGDQDLDNKGKRDLDRLIEFMEENPGRRLVLMGYSDSI---GAKLKNTQLSLNRAKAV 537 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD--PMNSANRRIDILVE 339 + L G+ + + G +D NRR+++ + Sbjct: 538 EKELQARGIG---VMAVEGLGEALPVANNDNESGRERNRRVEVWLL 580 >gi|307579950|gb|ADN63919.1| outer membrane protein P6 precursor [Xylella fastidiosa subsp. fastidiosa GB514] Length = 149 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E VL + L + I+++G+TD R N L R S Sbjct: 46 FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 102 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S +++ +S + R + S NRR++I+ Sbjct: 103 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 145 >gi|126736760|ref|ZP_01752498.1| OmpA/MotB [Roseobacter sp. CCS2] gi|126713731|gb|EBA10604.1| OmpA/MotB [Roseobacter sp. CCS2] Length = 592 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 10/112 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLSLDRAY 293 F ++ + I +++I ++ + + + G TD+ +N L+ RA Sbjct: 483 FLTGQAVLDTKAIADIKRISSIVRSAEYEGYEVLVFGFTDSV---GTINNNIALAERRAQ 539 Query: 294 SAYQVLMK--SGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 + VL+ +G+ +D I G +D NRR+++ + R Sbjct: 540 TVKDVLIAENAGILDDETVSIFGMGPIAPVNCNDTSVGRDLNRRVEVWIRPR 591 >gi|28198797|ref|NP_779111.1| outer membrane protein P6 precursor [Xylella fastidiosa Temecula1] gi|28056888|gb|AAO28760.1| outer membrane protein P6 precursor [Xylella fastidiosa Temecula1] Length = 187 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E VL + L + I+++G+TD R N L R S Sbjct: 84 FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 140 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S +++ +S + R + S NRR++I+ Sbjct: 141 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 183 >gi|71901734|ref|ZP_00683806.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|182681496|ref|YP_001829656.1| peptidoglycan-associated lipoprotein [Xylella fastidiosa M23] gi|71728506|gb|EAO30665.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|182631606|gb|ACB92382.1| peptidoglycan-associated lipoprotein [Xylella fastidiosa M23] Length = 179 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E VL + L + I+++G+TD R N L R S Sbjct: 76 FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 132 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S +++ +S + R + S NRR++I+ Sbjct: 133 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 175 >gi|71275795|ref|ZP_00652079.1| OmpA/MotB [Xylella fastidiosa Dixon] gi|71900394|ref|ZP_00682527.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|170730225|ref|YP_001775658.1| outer membrane protein P6 [Xylella fastidiosa M12] gi|71163373|gb|EAO13091.1| OmpA/MotB [Xylella fastidiosa Dixon] gi|71729826|gb|EAO31924.1| OmpA/MotB [Xylella fastidiosa Ann-1] gi|167965018|gb|ACA12028.1| outer membrane protein P6 precursor [Xylella fastidiosa M12] Length = 178 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD E VL + L + I+++G+TD R N L R S Sbjct: 75 FDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDE---RGSREYNIALGERRGNSV 131 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S +++ +S + R + S NRR++I+ Sbjct: 132 LYSLQANGASSGQLNVVS-YGEERPVCTESTESCWSRNRRVEIV 174 >gi|320577070|gb|ADW54044.1| outer membrane protein A [Sodalis glossinidius] Length = 267 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + PE L ++ L+ + + G+TD N +LS Sbjct: 188 KSDVLFNFDKATLKPEGQQALDQLYSQLSSMDPKDGSVVVLGYTD--RIGTEQY-NQKLS 244 Query: 289 LDRAYSAYQVLMKSGVSEDRISK 311 +RA S L+ G+ D+IS Sbjct: 245 QERAQSVVSYLVSKGIPSDKISA 267 >gi|54302595|ref|YP_132588.1| hypothetical protein PBPRB0916 [Photobacterium profundum SS9] gi|46916019|emb|CAG22788.1| hypothetical protein PBPRB0916 [Photobacterium profundum SS9] Length = 208 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 211 IVKGVLFETTRTG--ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVIS 267 + + + T +L + +Q+ FD + + +L I L H + Sbjct: 67 VTDSITYTATPDASILLAQLPEQKEVIYFDNMNYELSVKNQQLLDPIALRLKLHLDSYLI 126 Query: 268 IRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDP 326 + GH+D +N LS +RA+S + G+ E+RI +I L + Sbjct: 127 VIGHSDD---AGSKEENLVLSFERAFSVAIYISSVFGIEEERI-QIVALGDDELISNGNS 182 Query: 327 M--NSANRRIDIL 337 NRR++++ Sbjct: 183 EQERRLNRRVEVI 195 >gi|212219329|ref|YP_002306116.1| IcmN protein, OmpA family [Coxiella burnetii CbuK_Q154] gi|212013591|gb|ACJ20971.1| IcmN protein, OmpA family [Coxiella burnetii CbuK_Q154] Length = 212 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ + L+ + ++ + + +TD + + L+ +A Sbjct: 101 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L G++ R++ G+ + + NRR++I Sbjct: 158 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 200 >gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] gi|254040224|gb|ACT57020.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 6/103 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 ++ FD SS P I VL +G L I GH D + L L RA Sbjct: 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL---GSRNSSIALGLRRA 106 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 Y+ + + G+S R+ K++ + + + + NRR Sbjct: 107 YAVFNYFVARGISASRM-KVTSYGKEMPSVYGHDEDAYAKNRR 148 >gi|209363772|ref|YP_001423789.2| IcmN protein, OmpA family [Coxiella burnetii Dugway 5J108-111] gi|212212032|ref|YP_002302968.1| IcmN protein, OmpA family [Coxiella burnetii CbuG_Q212] gi|207081705|gb|ABS76937.2| IcmN protein, OmpA family [Coxiella burnetii Dugway 5J108-111] gi|212010442|gb|ACJ17823.1| IcmN protein, OmpA family [Coxiella burnetii CbuG_Q212] Length = 212 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ + L+ + ++ + + +TD + + L+ +A Sbjct: 101 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L G++ R++ G+ + + NRR++I Sbjct: 158 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 200 >gi|215919216|ref|NP_820613.2| ompA family protein [Coxiella burnetii RSA 493] gi|206584100|gb|AAO91127.2| IcmN protein, OmpA family [Coxiella burnetii RSA 493] Length = 212 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ + L+ + ++ + + +TD + + L+ +A Sbjct: 101 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 157 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L G++ R++ G+ + + NRR++I Sbjct: 158 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 200 >gi|161830197|ref|YP_001597454.1| ompA family protein [Coxiella burnetii RSA 331] gi|164685809|ref|ZP_01945857.2| ompA family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165919482|ref|ZP_02219502.1| ompA family protein [Coxiella burnetii RSA 334] gi|161762064|gb|ABX77706.1| ompA family protein [Coxiella burnetii RSA 331] gi|164601325|gb|EAX33525.2| ompA family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916897|gb|EDR35501.1| ompA family protein [Coxiella burnetii RSA 334] Length = 170 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F S+ + L+ + ++ + + +TD + + L+ +A Sbjct: 59 LFKPDSANLRSDYRPTLKALARLMKTYDKVNVQVAAYTDNNGHIERQQ---ALTTRQAQV 115 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDI 336 L G++ R++ G+ + + NRR++I Sbjct: 116 VASFLWSRGINA-RLAYAVGYNRKNPVDYNGSSHGRFNNRRVEI 158 >gi|319786286|ref|YP_004145761.1| peptidoglycan-associated lipoprotein [Pseudoxanthomonas suwonensis 11-1] gi|317464798|gb|ADV26530.1| peptidoglycan-associated lipoprotein [Pseudoxanthomonas suwonensis 11-1] Length = 170 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L I+++G+ D R N L R + Sbjct: 67 FDFDQDALKPEFQAIVGCHAKYLRDRPSARITLQGNADE---RGSRAYNQALGERRGNAV 123 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S ++ +S + R + + NRR++I+ Sbjct: 124 NSALQAAGGSASQLEVVS-YGEERPVCTESTESCWAQNRRVEIV 166 >gi|152984801|ref|YP_001349685.1| hypothetical protein PSPA7_4332 [Pseudomonas aeruginosa PA7] gi|150959959|gb|ABR81984.1| probable outer membrane protein [Pseudomonas aeruginosa PA7] Length = 293 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 7/101 (6%) Query: 244 PLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 +P T+ L K+ ++ I + GHTD++ N +LS +RA S + S Sbjct: 187 LMPITLNPLGKVAKMAQADPQSGILVLGHTDST---GSKAVNDKLSFERAQSVAAIFRLS 243 Query: 303 GVSEDRISKISGFAHHRLK--IASDPMNSANRRIDILVEDR 341 G+ D++ ++ G + +S + NRR+++L R Sbjct: 244 GLKGDQL-RLKGVGSDMPRADNSSAAGRAQNRRVEVLYTQR 283 >gi|119478304|ref|ZP_01618335.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [marine gamma proteobacterium HTCC2143] gi|119448644|gb|EAW29889.1| Outer membrane protein and related peptidoglycan-associated (lipo)protein [marine gamma proteobacterium HTCC2143] Length = 300 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV--ISIRGHTDASPFRNIARDNWRLS 288 R+ F + + L + + + V I GHTD+ N LS Sbjct: 188 NRSRVHFITAKFELTRDAKTQLDDVVRYVKADSSVTGFYIDGHTDSI---GRRLYNLELS 244 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVED 340 RA + + L+ +GV E + I + ANRR+ + +E Sbjct: 245 KQRAEAVTKYLVSNGVDEA-MITTRYHGERYPVIDNSSAKNRYANRRVTLRLER 297 >gi|283835685|ref|ZP_06355426.1| OmpA family protein [Citrobacter youngae ATCC 29220] gi|291068900|gb|EFE07009.1| OmpA family protein [Citrobacter youngae ATCC 29220] Length = 160 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 + +FDK+ PE+ +Q++ LA + + GHTD N LSL R Sbjct: 52 DNILFDKNDYKLRPESEKQIQEMASKLAATGLNHARLDGHTDNY---GEDSYNEALSLKR 108 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 A + G ++ + NRR+ +++ Sbjct: 109 ANVVADAWAQGANIPRTNLTTQGLGKKYPIASNQTSKGRAENRRVAVVI 157 >gi|229588858|ref|YP_002870977.1| hypothetical protein PFLU1327 [Pseudomonas fluorescens SBW25] gi|229360724|emb|CAY47582.1| putative outer membrane protein [Pseudomonas fluorescens SBW25] Length = 381 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 242 SIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 ++ LP T+ ++ + + + + + GH DA+ ++ L+ +RA S + Sbjct: 202 AMLLPVTLGPFTRVAKAVEADPKTAVLVLGHVDATGTAPASQ---ALTKERAQSIASIFS 258 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 SG+ +DR+ + G + A+D + NRR++I+ R Sbjct: 259 LSGLKQDRLM-LRGMGDLMPRAANDSNQGRALNRRMEIMFTQR 300 >gi|126731139|ref|ZP_01746947.1| hypothetical protein SSE37_21910 [Sagittula stellata E-37] gi|126708441|gb|EBA07499.1| hypothetical protein SSE37_21910 [Sagittula stellata E-37] Length = 242 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH---STEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 FD S+ + L + L+ + ++ GHTDA N LS RA Sbjct: 125 FDFDSANIRGDQFGKLTALVAALSDPALAGTSYAVIGHTDA---SGSEGYNCDLSRRRAA 181 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 S L + V+ + + GF H LK DP NRR+ + Sbjct: 182 SVAGALNAAYVTLP-LYPV-GFGEHVLKNVYDPRAPENRRVTFM 223 >gi|238755499|ref|ZP_04616838.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia ruckeri ATCC 29473] gi|238706255|gb|EEP98633.1| Outer membrane protein and peptidoglycan-associated (lipo)protein [Yersinia ruckeri ATCC 29473] Length = 92 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%) Query: 250 VVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 ++KIG L I + GHTD+ N RLS RA + L G+ Sbjct: 2 QTVEKIGRALKAVDINHIRLNGHTDSM---GEDSYNDRLSYGRASAVADTLATIGMPRAN 58 Query: 309 ISKISGFAHHRLKIASDP--MNSANRRIDILV 338 I + G + + NRR+ ++V Sbjct: 59 ID-VRGLGKLNPVADNHTAKGRAENRRVAMIV 89 >gi|237809441|ref|YP_002893881.1| peptidoglycan-associated lipoprotein [Tolumonas auensis DSM 9187] gi|237501702|gb|ACQ94295.1| peptidoglycan-associated lipoprotein [Tolumonas auensis DSM 9187] Length = 171 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 231 QRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSL 289 Q N F+ S + +LQ + L H++ + I GHTD R N L Sbjct: 65 QDNVIYFNYDSDAIEGQYAQLLQTHADFLRGHNSVKVLIEGHTDE---RGTPEYNIALGE 121 Query: 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNS--ANRR 333 RA + + + GV ++S +S + + ++ NRR Sbjct: 122 RRAKAVAKYMQNLGVDVSQLSVVS-YGEEKPADPGHAEDAFGHNRR 166 >gi|89053189|ref|YP_508640.1| OmpA/MotB [Jannaschia sp. CCS1] gi|88862738|gb|ABD53615.1| OmpA/MotB [Jannaschia sp. CCS1] Length = 195 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 16/141 (11%) Query: 199 ISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 I + G V V + G+ MF S+ LQ+ Sbjct: 66 IEGYMEGRVNPENGMPVCLDVNPCGV------ANTDTMFQSGSARLTGSGRQYLQQF--F 117 Query: 259 LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHH 318 +I GHTD+ R N RLS RA + V G R+++ G+ Sbjct: 118 AGAGAYAYAIYGHTDS---RASDEYNMRLSERRAAAVANVARSVG---ARVAREIGYGER 171 Query: 319 RLKIASDPMN--SANRRIDIL 337 R +D NRR++I+ Sbjct: 172 RPVAPNDSAANMQRNRRVEIV 192 >gi|254361857|ref|ZP_04977991.1| lipoprotein PlpD [Mannheimia haemolytica PHL213] gi|3283200|gb|AAC32565.1| lipoprotein Plp4 [Mannheimia haemolytica] gi|153093396|gb|EDN74387.1| lipoprotein PlpD [Mannheimia haemolytica PHL213] Length = 284 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDR 291 +FD + + V+ + + L S + + + G+TD A N LS R Sbjct: 143 GDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQVKVAGYTDRL---GSAAYNLDLSQRR 199 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDI 336 + + L++ GV +I + G A+ + + NRR++I Sbjct: 200 SNTVKARLVQQGV-TAQIEAVGYGKANQVKACDGETGQALKDCLRPNRRVEI 250 >gi|21232447|ref|NP_638364.1| outer membrane protein P6 precursor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767470|ref|YP_242232.1| outer membrane protein P6 precursor [Xanthomonas campestris pv. campestris str. 8004] gi|188990576|ref|YP_001902586.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv. campestris str. B100] gi|21114228|gb|AAM42288.1| outer membrane protein P6 precursor [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572802|gb|AAY48212.1| outer membrane protein P6 precursor [Xanthomonas campestris pv. campestris str. 8004] gi|167732336|emb|CAP50528.1| PAL family outer membrane lipoprotein [Xanthomonas campestris pv. campestris] Length = 172 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD PE ++ + L I+++G+ D R N L R + Sbjct: 69 FDLDQDSLKPEFQAIMACHAKYLRDRPSSRITLQGNADE---RGSREYNMGLGERRGNAV 125 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDIL 337 L +G S +++ +S + R + S NRR++I+ Sbjct: 126 SSALQAAGGSASQLTVVS-YGEERPVCTETSESCWSQNRRVEIV 168 >gi|322418107|ref|YP_004197330.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18] gi|320124494|gb|ADW12054.1| peptidoglycan-associated lipoprotein [Geobacter sp. M18] Length = 196 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 13/174 (7%) Query: 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILIS 227 ++ P ++ A + K + + + +VA ++ + T Sbjct: 31 EEQAPAVTAPSTETAKPAREAKPEQKAPVTEQTPVREPVVAQDLRETTKAPATD------ 84 Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWR 286 + Q F+ SS E+ L + E L + + I G+ D R N Sbjct: 85 LQSQLQKVYFNFDSSDLSEESRNTLSRNAEYLSKQGSLKVLIEGNCDE---RGSDDYNMA 141 Query: 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILV 338 L RA +A L+ G++ +RIS IS + + + + NRR + +V Sbjct: 142 LGERRAKAAKDYLVNLGIASERISTIS-YGEEKPADPGHDEAAWAKNRRAEFVV 194 >gi|149371838|ref|ZP_01891157.1| outer membrane protein, peptidoglycan-associated lipoprotein [unidentified eubacterium SCB49] gi|149354978|gb|EDM43539.1| outer membrane protein, peptidoglycan-associated lipoprotein [unidentified eubacterium SCB49] Length = 647 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 15/125 (12%) Query: 227 SIIDQRNTPM--FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARD 283 + D + M FD + + LQK+ + + I +R HTD+ RN Sbjct: 527 DLNDILDLNMIYFDLDKDFIRADAQIELQKVIKYMKKYPNLKIDVRSHTDS---RNSHAY 583 Query: 284 NWRLSLDR-AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRID 335 N LS R + ++ G+S R++ G+ +L S+ ++ NRR + Sbjct: 584 NEDLSSRRNKNTIAYIVNHGGISAARLTG-RGYGETQLTNHCSDGVQCSEALHQLNRRSE 642 Query: 336 ILVED 340 ++ + Sbjct: 643 FIIVE 647 >gi|110598626|ref|ZP_01386892.1| OmpA/MotB [Chlorobium ferrooxidans DSM 13031] gi|110339738|gb|EAT58247.1| OmpA/MotB [Chlorobium ferrooxidans DSM 13031] Length = 150 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 FD S + + L+ + L + + + GH D R A N L R Sbjct: 45 GDVFFDFDKSDIRTDAVDQLKTNAQWLQANPSQKVVVEGHCDN---RGTAEYNLALGERR 101 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 A +A ++ G R+ +S + R + + NRR Sbjct: 102 AAAARDFVVNLGTDAARVKTVS-YGEERPFAQGNTEEAWAQNRR 144 >gi|90577941|ref|ZP_01233752.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14] gi|90441027|gb|EAS66207.1| hypothetical outer membrane protein OmpA [Vibrio angustum S14] Length = 347 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 244 PLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKS 302 E LQ + + L + + G+T + ++A N +LS RA + +L + Sbjct: 231 LTQEDKQRLQPMIQRLTRYPSATVEVTGYTSNT--GSVAY-NQKLSEKRAKNVADLLSQY 287 Query: 303 GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDI 336 +I+ G +D + NRR++I Sbjct: 288 VADASQITA-KGMGEANPIATNDTAKGRAENRRVEI 322 >gi|152978942|ref|YP_001344571.1| SmpA/OmlA domain-containing protein [Actinobacillus succinogenes 130Z] gi|150840665|gb|ABR74636.1| SmpA/OmlA domain protein [Actinobacillus succinogenes 130Z] Length = 282 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 18/115 (15%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD E V+ + L S +S+ G+TD N LS R Sbjct: 147 GDFLFDFDKDTLTTEGKKVVDNVASQLKSSEAKEVSVAGYTDRL---GSDAYNLDLSQRR 203 Query: 292 AYSAYQVLMKSGVS----------EDRISKISGFAHHRLKIASDPMNSANRRIDI 336 A L++ GVS +++ G L P NRR++I Sbjct: 204 ADRVKNRLIEQGVSAQITATGYGKANQVKACEGERGQALINCLHP----NRRVEI 254 >gi|309780841|ref|ZP_07675582.1| peptidoglycan-associated outer-membrane lipoprotein [Ralstonia sp. 5_7_47FAA] gi|308920523|gb|EFP66179.1| peptidoglycan-associated outer-membrane lipoprotein [Ralstonia sp. 5_7_47FAA] Length = 167 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE +L + L +H+ + I+G+TD R + N L RA + Sbjct: 67 FDFDSYSVKPEYQGLLGQHSRYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 123 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDIL 337 + L GV + ++ +S G + + + NRR DI+ Sbjct: 124 RRALSSMGVPDSQMEAVSLGKEKPQATGHDEDSWAQNRRADIV 166 >gi|21673470|ref|NP_661535.1| peptidoglycan-associated lipoprotein [Chlorobium tepidum TLS] gi|21646575|gb|AAM71877.1| peptidoglycan-associated lipoprotein [Chlorobium tepidum TLS] Length = 170 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDR 291 FD SS E L + + + + I GH D R N L R Sbjct: 65 GDIFFDFDSSALSSEAQEQLNQNAAWMQKNPTSAVIIEGHCDE---RGTDEYNIALGERR 121 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 A +A L+ GVS R+S +S + + ++ + NRR Sbjct: 122 AEAARMYLVNLGVSGGRLSTVS-YGEEKPFDPGHNEEAWAKNRR 164 >gi|121998997|ref|YP_001003784.1| OmpA/MotB domain-containing protein [Halorhodospira halophila SL1] gi|121590402|gb|ABM62982.1| OmpA/MotB domain protein [Halorhodospira halophila SL1] Length = 208 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 11/118 (9%) Query: 228 IIDQRNTPM------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNI 280 ++D+ +P+ F SS + I VL+ E L + ++I GHTD R Sbjct: 91 VLDEPESPLATRRVHFAFDSSNIRDDDIPVLEAHAEFLREHPDERMTIEGHTDE---RGS 147 Query: 281 ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDIL 337 N L RA + ++L +G D++ +S L S+ + NRR ++L Sbjct: 148 REYNLALGERRAEAVERLLRANGARSDQLEVVSYGEEDPLVDESNEDAWAENRRAELL 205 >gi|116621983|ref|YP_824139.1| OmpA/MotB domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116225145|gb|ABJ83854.1| OmpA/MotB domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 199 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 227 SIIDQRNTPMFDKSSSIPLPETIVVLQ----KIGEVLAHST-EVISIRGHTDASPFRNIA 281 ++ + FD + P+ + L ++ ++L + I GH D R A Sbjct: 80 QLLAKIEDAYFDYDKASLRPDAMKALNADSTELRDILKDYPDYKLRIEGHADE---RGSA 136 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 N L RA +A + L++ G+ ++ ++ F R N NRRI I+ E Sbjct: 137 EYNVALGDRRAATAKEYLVQVGIPSTQLD-VTSFGKERPVCQDHNENCWQKNRRIHIVAE 195 Query: 340 DR 341 + Sbjct: 196 AK 197 >gi|119474630|ref|ZP_01614983.1| flagellar motor protein [marine gamma proteobacterium HTCC2143] gi|119450833|gb|EAW32066.1| flagellar motor protein [marine gamma proteobacterium HTCC2143] Length = 110 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 7/74 (9%) Query: 34 KIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYF-------NPFGKNLMTASKGIFDE 86 +AD M++LM FF+++ + D K + N I + Sbjct: 1 MSTFADLMSLLMCFFVLLLSFSEMDAMKFKRLAGSMAQAFGVQNKLDMKDPPKGTSIIAQ 60 Query: 87 QNPPERSSQNKIDL 100 + P R I+ Sbjct: 61 EFSPGRPDPTPINQ 74 >gi|300692236|ref|YP_003753231.1| peptidoglycan-associated lipoprotein, protein pal, component of tol-pal system [Ralstonia solanacearum PSI07] gi|299079296|emb|CBJ51968.1| Peptidoglycan-associated lipoprotein, protein pal, component of tol-pal system [Ralstonia solanacearum PSI07] Length = 172 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S PE +L + L +H+ + I+G+TD R + N L RA + Sbjct: 72 FDFDSYTVKPEYQGLLTQHARYLQSHNQRKVLIQGNTDE---RGTSEYNLALGQKRAEAV 128 Query: 296 YQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDI 336 + L GV + ++ +S G + + + NRR DI Sbjct: 129 RRALSSLGVPDSQMEAVSLGKEKPQATGHDEESWAQNRRSDI 170 >gi|299136066|ref|ZP_07029250.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8] gi|298602190|gb|EFI58344.1| OmpA/MotB domain protein [Acidobacterium sp. MP5ACTX8] Length = 269 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 31/185 (16%) Query: 187 KRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIID---------QRNTPM- 236 ++ QD K + D +TT+ G+ ++ D Q N Sbjct: 85 QQVAAAQDQLKSDRKDIEQNQQDTAKNSQDIDTTKQGLAVTTADTATNKQAIGQANQRFT 144 Query: 237 --------------FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIA 281 F + + L + A++ +I ++G+ A A Sbjct: 145 TLDQYEDKGSITVNFANGKATVSKKDKDQLTDFVKSAANTPGYMIEVQGYASAV---GSA 201 Query: 282 RDNWRLSLDRAYSAYQVLMKSGVSE-DRISKISGFAHHRLKIASDP--MNSANRRIDILV 338 N RLS +RA + ++ ++GV RI + ++ NRR+ + + Sbjct: 202 ALNQRLSSERADAVLAIIQQTGVVPMTRILAPAAMGTTNPVSEDHTRSAHAQNRRVVVTI 261 Query: 339 EDRQG 343 +G Sbjct: 262 VVNKG 266 >gi|225848487|ref|YP_002728650.1| OmpA/MotB [Sulfurihydrogenibium azorense Az-Fu1] gi|225643425|gb|ACN98475.1| putative OmpA/MotB [Sulfurihydrogenibium azorense Az-Fu1] Length = 281 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 22/162 (13%) Query: 197 KKISSTLSGLVADNIVKGVLFETTRTGI----LI---SIIDQRN--------TPMFDKSS 241 K+I L+ + D K V T + +I I + + F +S Sbjct: 121 KEIELGLNPNIPDKAQKEVKVATEPQEMKPSDVITKNEIKEVKEKQALEEPVRVHFYLNS 180 Query: 242 SIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 E + L + L + I G+TD + A ++ +L+L RA + + L+ Sbjct: 181 VSIKKEYLPYLNVVARYLKTHPDVKVKIVGYTDN--IGSKAYND-KLALKRAETVKKYLV 237 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSA--NRRIDILVED 340 K G+ +RI I G + +++ NRR + V + Sbjct: 238 KMGIDPNRIL-IEGVGKDKYIVSNKNEIDRFTNRRAEFYVIN 278 >gi|194337185|ref|YP_002018979.1| peptidoglycan-associated lipoprotein [Pelodictyon phaeoclathratiforme BU-1] gi|194309662|gb|ACF44362.1| peptidoglycan-associated lipoprotein [Pelodictyon phaeoclathratiforme BU-1] Length = 173 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 FD S+ E L + G + + I GH D R + N L R Sbjct: 68 GDVFFDYDSATLSAEAQEQLHQNGVWMGSNARKGALIEGHCDE---RGTSEYNLALGDRR 124 Query: 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRR 333 A SA + L++ GV+ R+ +S + R A ++ + NRR Sbjct: 125 AISAKEYLVRFGVAPSRLETVS-YGEERPFAAGSNEESWAKNRR 167 >gi|330947103|gb|EGH47879.1| OmpA/MotB [Pseudomonas syringae pv. pisi str. 1704B] Length = 156 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 242 SIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 ++ LP T+ + ++ +V+ + I GH D N ++S +RA S + Sbjct: 1 AMLLPNTLGPITRLAKVVEGDQKTAVLILGHADT---SGSTEANQKISQERAQSVAAIFR 57 Query: 301 KSGVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVEDR 341 SG+ +R+S+ G + A+D + NRR++IL+ + Sbjct: 58 LSGLERNRLSQ-RGMGAVMPRAANDSLQGRALNRRVEILMTPQ 99 >gi|85710327|ref|ZP_01041392.1| ompA family protein [Erythrobacter sp. NAP1] gi|85689037|gb|EAQ29041.1| ompA family protein [Erythrobacter sp. NAP1] Length = 320 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 7/107 (6%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + L + + + G+TD++ N RLS RA S Sbjct: 201 FDTGRHNLSQQARAELCNAAAQAEATDNALLLVVGYTDST---GSQEVNQRLSERRAGSV 257 Query: 296 YQVLMKS-GVSEDRISKISGFAHHRLKIASDP--MNSANRRIDILVE 339 L + G R+ +G A + + NRR+ + V Sbjct: 258 VNFLQQQCGWKPWRMLSPTGMAEADPAADNTTAYGKAQNRRVAVNVL 304 >gi|153875680|ref|ZP_02003374.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152067857|gb|EDN66627.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 238 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARD-----NWRLSLD 290 F+ + I L+++ I I HT+ F+ I ++ N LS + Sbjct: 129 FNSGKASLKRGAIYQLKEMAAAFKTIAPLKIKIHSHTNIQTFKGIEQEESSKRNQILSEE 188 Query: 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSANRRIDILVE 339 RA + L + G+ D I K G + + + + N+RI+I VE Sbjct: 189 RADTIADTLARLGIDRDYI-KTFGHGYSQPLTYELTKAALAKNKRIEIKVE 238 >gi|307130110|ref|YP_003882126.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya dadantii 3937] gi|16116638|emb|CAC82710.1| peptidoglycan-associated lipoprotein [Erwinia chrysanthemi] gi|306527639|gb|ADM97569.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya dadantii 3937] Length = 168 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282 + + + + N FD P+ +L L + +++ GH D R Sbjct: 55 LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTVEGHADE---RGTPE 111 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 N L RA + L GVS D+IS +S G + + S NRR Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163 >gi|114047773|ref|YP_738323.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gi|113889215|gb|ABI43266.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 264 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 86/278 (30%), Gaps = 26/278 (9%) Query: 69 FNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLE 128 N++ S + R S + + D G L Sbjct: 2 MKKTLINILVLSVFAAPIASVSARVSLQNQPVLSEPQTEMLEQDEDDGEALIGLGGGALL 61 Query: 129 NNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKR 188 + +L S D K+ ++ +++ L LS ++ + +R Sbjct: 62 GALVGGPVGAIIGGFTGTLIGQSVSDTDTVKTQQQHIALQRQQ---LASLSSKQQASEQR 118 Query: 189 KKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPET 248 K++ L+ + L G+ + F SS Sbjct: 119 AAEYASTQKQLDELLAE-------QQQLLSELALGMNVQ---------FRTGSSELESHF 162 Query: 249 IVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSED 307 + L + +V+ S+E + ++G+ D R N LS R L+K GV+ + Sbjct: 163 LPQLDNVVKVMKRSSESNLELKGYADR---RGDLAYNQALSEQRLLEVRGYLIKQGVAPE 219 Query: 308 RISKISGFAHHRLKIA--SDPMNSANRRIDILVEDRQG 343 RI+ F + +RR+ + ++ QG Sbjct: 220 RIT-TQAFGARMPLNDQQDSESDVFDRRVTLTMQPNQG 256 >gi|332877757|ref|ZP_08445498.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684337|gb|EGJ57193.1| OmpA family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 660 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD + + + L KI +V+ + + +R HTD+ R + N LS RA S Sbjct: 552 FDYNKANIRKDAAEQLAKIVKVMQEHPTMTVDVRLHTDS---RGSDKYNLALSQRRAKST 608 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-------SDPMNSANRRIDILV 338 + + G+ ++RI+ G+ +L ++ + ANRR + ++ Sbjct: 609 IKWITSHGIKKNRITG-KGYGETQLVNECSNGVPCTEEQHQANRRSEFII 657 >gi|325268738|ref|ZP_08135366.1| major outer membrane protein OmpA family protein [Prevotella multiformis DSM 16608] gi|324988906|gb|EGC20861.1| major outer membrane protein OmpA family protein [Prevotella multiformis DSM 16608] Length = 387 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 182 KILAMKRKKRLQDLAKKI--SSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 + + + + L L K+ S + + D + ETT + +++ + F+ Sbjct: 234 EAINAQHQAALDALNAKLRDSEAENARLRDQLANQKPVETTSESVK-QLVNTPVSVFFNI 292 Query: 240 SSSIPLPETIVV-LQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 + S + +V +Q + + + + + G+ D++ N +LS RA + Sbjct: 293 NKSTIASQKDLVNVQALAKYAKDNNNSLLVTGYADSA--TGTPAYNQKLSERRANTVANE 350 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRR 333 L+K GV +I+ + G S NRR Sbjct: 351 LVKMGVENSKITAV-GKGGVETLSPI----SFNRR 380 >gi|149918137|ref|ZP_01906630.1| OmpA family protein [Plesiocystis pacifica SIR-1] gi|149821142|gb|EDM80548.1| OmpA family protein [Plesiocystis pacifica SIR-1] Length = 158 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 10/109 (9%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV---ISIRGHTDASPFRNIARDNWRLS 288 ++ +F S+ + L + + + GHTD R N L Sbjct: 52 KDEALFAYDSAKLSEKAERTLALLARCFDTGPMRYQDLLVTGHTDP---RGSDEYNLDLG 108 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN-SANRRIDI 336 L+RA + L+ GV + RI S R ++DP + +R+++I Sbjct: 109 LERAVAVRDYLVDEGVEDFRIEARS-VGERR--ASNDPEDWDDDRKVEI 154 >gi|149910558|ref|ZP_01899197.1| putative peptidoglycan-associated lipoprotein [Moritella sp. PE36] gi|149806401|gb|EDM66374.1| putative peptidoglycan-associated lipoprotein [Moritella sp. PE36] Length = 196 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 8/130 (6%) Query: 207 VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EV 265 V+ + V+ + E + ++ + +R+ F E +LQ L + Sbjct: 67 VSIDSVENLTVEEVKKQVMDELR-KRHVVYFGFDQQAVTAEYGELLQDHANFLIDNPAVK 125 Query: 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 + I GH D R N L RA + + L GVS +IS +S + + S Sbjct: 126 VLIEGHADE---RGTPGYNIALGERRANAVVKYLNNLGVSSSQISTVS-YGEEKPVNTSH 181 Query: 326 PMNS--ANRR 333 + NRR Sbjct: 182 TDAAFTQNRR 191 >gi|238650590|ref|YP_002916442.1| peptidoglycan-associated lipoprotein precursor [Rickettsia peacockii str. Rustic] gi|238624688|gb|ACR47394.1| peptidoglycan-associated lipoprotein precursor [Rickettsia peacockii str. Rustic] Length = 155 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F SS P+ L++ L+ +++ GH D R N L RA +A Sbjct: 53 FAFDSSALSPKAKEELERQACWLSKHPEVKVTVEGHCDE---RGTKNYNLGLGERRAAAA 109 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRR 333 + L G+ +R++ IS + R + + + NRR Sbjct: 110 KKFLAHKGIDHNRLNTIS-YGKDRPAMMGNTEEAFAYNRR 148 >gi|223041650|ref|ZP_03611847.1| hypothetical protein AM202_0258 [Actinobacillus minor 202] gi|223017514|gb|EEF15928.1| hypothetical protein AM202_0258 [Actinobacillus minor 202] Length = 162 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 12/113 (10%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDR 291 +FD S+ + L I + + + +++ G+TD A N +LS R Sbjct: 52 GDFLFDFDKSVLSAKGKSTLNGIAKEIKDTGAKNVTVTGYTDRL---GSATYNQKLSQAR 108 Query: 292 AYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA------NRRIDIL 337 A + L GVS + I + G A+ + + NRR+ I+ Sbjct: 109 ANTTKAYLQSQGVSAN-IKAVGRGAANQVKACKGETGQALKDCLKPNRRVHII 160 >gi|171059731|ref|YP_001792080.1| OmpA/MotB domain-containing protein [Leptothrix cholodnii SP-6] gi|170777176|gb|ACB35315.1| OmpA/MotB domain protein [Leptothrix cholodnii SP-6] Length = 534 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 15/112 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S P+ L I E L + + + I G D R + N+RLS RA + Sbjct: 412 FDTGSDQPMAGEEAKLDGIQEYLDNYPDATLGIDGFAD---IRGSEQFNFRLSDQRAQTV 468 Query: 296 YQVLMKSGVSEDRISKISGFAHHR-------LKIASDPMNS----ANRRIDI 336 +++ G++ RI G + + P+++ ANRR+ I Sbjct: 469 QALVLAEGIAAGRIDWAVGVGETQDFSQHGTAPGTAQPVDAGRLRANRRVVI 520 >gi|49182352|gb|AAT57678.1| OmpA [Pasteurella multocida] Length = 348 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS-TEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + P VL I +A + +++ G+TD N +LS RA + Sbjct: 235 FGFDKADLKPAAQNVLDGIYGEIAQLKSASVAVAGYTDRL---GSDAYNLKLSQRRADTV 291 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIASD-----------PMNSANRRIDILVEDRQ 342 L+ GV+++ IS +G + + +RR++I V+ + Sbjct: 292 ANYLVAKGVAQNAISA-TGRGEANPVTGNKCDSVKGRKALIACLADDRRVEIAVKGNK 348 >gi|52425273|ref|YP_088410.1| OmpA protein [Mannheimia succiniciproducens MBEL55E] gi|52307325|gb|AAU37825.1| OmpA protein [Mannheimia succiniciproducens MBEL55E] Length = 368 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 16/118 (13%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + PE L I +A +S+ G+ D N +LS RA + Sbjct: 255 FAFGKATLKPEASASLDNIYGEIAQVQSPAVSVAGYADRI---GKEAANLKLSQRRAETV 311 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDRQ 342 L+ GV+++ I+ +G+ + D + +RR+++ V+ + Sbjct: 312 ANYLVSKGVAQNAITA-TGYGEANPVTGNTCDAVKGRKALIACLAPDRRVEVSVQGTK 368 >gi|60681175|ref|YP_211319.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] gi|60492609|emb|CAH07381.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343] Length = 366 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 180 KEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDK 239 ++ + L ++S S L + T+ + + F Sbjct: 214 GAQVDQNAINEELNRYRSELSKAQSDLADAKNALANVKPVTKEVVKEIEVAGPRAVFFQI 273 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQV 298 S +V +Q ++L + + I G+ D + A+ N +LS RA + Y Sbjct: 274 GKSKIDDYGMVNIQLAAKILKANPDKKYKIAGYADKA--TGSAKWNQKLSEARAQAVYDA 331 Query: 299 LMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDIL 337 L+K GVS+D++ I GF + +N R+ IL Sbjct: 332 LIKEGVSKDQLELI-GFGGTANMFGKNFLN----RVVIL 365 >gi|253688926|ref|YP_003018116.1| OmpA domain protein transmembrane region-containing protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755504|gb|ACT13580.1| OmpA domain protein transmembrane region-containing protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 366 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 18/122 (14%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHST---EVISIRGHTDASPFRNIARDNWRLS 288 ++ +F+ + + E L ++ L+ + + G TD + N LS Sbjct: 238 KSDVLFNFNKATLKAEGQQSLDQLYTQLSSLDPKDGSVVVLGFTDRL---GSEQYNQGLS 294 Query: 289 LDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD-----PMNSA------NRRIDIL 337 RA S L+ G+ +++S G + S P + +RR++I Sbjct: 295 EKRAQSVVDYLVSKGIPANKVSA-RGLGKSQPVTGSTCDNVKPRAALIDCLAPDRRVEIE 353 Query: 338 VE 339 V+ Sbjct: 354 VK 355 >gi|251790481|ref|YP_003005202.1| peptidoglycan-associated outer membrane lipoprotein [Dickeya zeae Ech1591] gi|247539102|gb|ACT07723.1| peptidoglycan-associated lipoprotein [Dickeya zeae Ech1591] Length = 168 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 5/112 (4%) Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHST-EVISIRGHTDASPFRNIAR 282 + + + + N FD P+ +L L + +++ GH D R Sbjct: 55 LQMQELQRNNIVYFDLDKYDIRPDFAQMLDAHAAFLRSNPSYKVTVEGHADE---RGTPE 111 Query: 283 DNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRR 333 N L RA + L GVS D+IS +S G + + S NRR Sbjct: 112 YNIALGERRANAVQMYLQGKGVSADQISVVSYGKEKPAVLGHDEAAWSKNRR 163 >gi|213964189|ref|ZP_03392425.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno] gi|213953156|gb|EEB64502.1| OmpA/MotB domain protein [Capnocytophaga sputigena Capno] Length = 399 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 21/212 (9%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 N Q + +Q E + DL +++ + N P Sbjct: 197 NIAIGKQGKHADWAGADMREQEEDVAQRIAALESNVADLKGEVANKQNRMNDANGNRIPD 256 Query: 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFD 238 E L + + + S SG VA ++++ + FD Sbjct: 257 EIESYLNDNYQAKAGNAVANDSDVASGDVAADLIRKGYI----------------SAYFD 300 Query: 239 KSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 +SS P + + +G+ + + I++ G+ D N LS RA + Sbjct: 301 FNSSEPQVSSSWSIDFVGKYMKENPNAHITVNGYADEL---GGTNYNTTLSQKRADAVKN 357 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNS 329 +L+K+G+ +RI+ G + P Sbjct: 358 LLVKAGIDANRITA-QGKGVDNSVDKNSPKAR 388 >gi|258620771|ref|ZP_05715806.1| Outer membrane protein A [Vibrio mimicus VM573] gi|258586969|gb|EEW11683.1| Outer membrane protein A [Vibrio mimicus VM573] Length = 213 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 FD S+ ++ L ++ + LA + I + GHTD + + N LS RA S Sbjct: 99 FDTGSAKVSVQSKQWLDRMAQFLASESGIDIVLEGHTDNT---GAQKFNDTLSEKRASSV 155 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS 324 L++ V+++ I G+ H + Sbjct: 156 KTALVQRQVAQNAIY-TRGYGEHVPACTN 183 >gi|313206073|ref|YP_004045250.1| ompa/motb domain protein [Riemerella anatipestifer DSM 15868] gi|312445389|gb|ADQ81744.1| OmpA/MotB domain protein [Riemerella anatipestifer DSM 15868] gi|325336486|gb|ADZ12760.1| OmpA2 [Riemerella anatipestifer RA-GD] Length = 473 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHS--TEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 F +S + P++ L ++ ++ + G TD R A N +LS RA + Sbjct: 365 FALNSDVIRPQSFGKLDNAANIIKGMNTSKQYLVIGATDT---RGSASYNKKLSQRRADA 421 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIAS-DPM-------NSANRRI 334 + L+ GVS + G LK +P N ANRR+ Sbjct: 422 VVKYLVNKGVSTS-MLVAEGRGQEDLKYPECNPATKCPEWKNEANRRV 468 >gi|45758047|gb|AAO85782.1| heat-modifiable outer membrane protein [Mannheimia haemolytica] Length = 378 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%) Query: 236 MFDKSSSIPLPETIVVLQKI-GEV--LAHSTEVISIRGHTDASPFRNIARDNWRLSLDRA 292 +FD S P L E+ L + I + G+TD N +LS RA Sbjct: 258 LFDFGKSSLKPAAATSLDAAHAEISNLGLANLAIQVNGYTDRI---GKEASNLKLSQRRA 314 Query: 293 YSAYQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMNSA---------NRRIDILVEDR 341 + ++ G++ ++ + G+ D + +RR++I V+ Sbjct: 315 ETVANYIVSKGINPANVTAV-GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGS 373 Query: 342 Q 342 + Sbjct: 374 K 374 >gi|42521052|ref|NP_966967.1| peptidoglycan-associated lipoprotein, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034094|ref|ZP_01314208.1| hypothetical protein Wendoof_01001001 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42410793|gb|AAS14901.1| peptidoglycan-associated lipoprotein, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 159 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 15/115 (13%) Query: 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLD 290 F S + L + EVL + + +++ GHTD R N L Sbjct: 41 DKRVFFGYDESSIAEVSADALLDVMEVLQDNPDAKVTLTGHTDN---RGSHEYNLALGAR 97 Query: 291 RAYSAYQVLMK-SGVSEDRISKISGFAHHRLK--IASDPMN-------SANRRID 335 RA +A + ++ + E+RI S + D N + NRR++ Sbjct: 98 RADAAKKFMVSCTPYIENRIKTAS-KGETEPLVNVKDDSRNSKYEKEHAKNRRVE 151 >gi|309244383|gb|ADO52196.1| OprL [Pseudomonas sp. AF23] gi|309244387|gb|ADO52198.1| OprL [Pseudomonas sp. AF33] gi|309244389|gb|ADO52199.1| OprL [Pseudomonas sp. AF70] gi|309244391|gb|ADO52200.1| OprL [Pseudomonas sp. AF76] gi|309244393|gb|ADO52201.1| OprL [Pseudomonas sp. BcB122] gi|309244395|gb|ADO52202.1| OprL [Pseudomonas sp. BcB153] Length = 156 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 F+ SS PE + L + L + +++ G+TD R N L RA + Sbjct: 66 FEYDSSDLKPEAMRALDVHAKDLKANGNRVTLEGNTDE---RGTREYNMALGERRAKAVQ 122 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKIASD 325 + L+ GVS ++ +S + R + Sbjct: 123 RYLVLQGVSPAQLELVS-YGEERPVATGN 150 >gi|253702173|ref|YP_003023362.1| peptidoglycan-associated lipoprotein [Geobacter sp. M21] gi|251777023|gb|ACT19604.1| peptidoglycan-associated lipoprotein [Geobacter sp. M21] Length = 200 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 7/188 (3%) Query: 154 GKDLCKSTDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVK 213 G L + + EE + + A + + A + T + + V Sbjct: 15 GALLSAGCAKKDVVRTEEPISAAQSAPTQAPATQARPEADSGAAQQPITETTPSREQAVT 74 Query: 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHT 272 + TG + + F+ ++ E L K E L+ + I G+ Sbjct: 75 QETAKEAGTGATQEVQAELQKVYFNFDAADLSEEARGSLSKNAEYLSRQAGIKVRIEGNC 134 Query: 273 DASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA--SDPMNSA 330 D R N L RA +A L+ G++ DR+S IS + + + + Sbjct: 135 DE---RGSDDYNMALGERRAKAARDYLVNLGIASDRLSTIS-YGEEKPADPGHDEAAWAK 190 Query: 331 NRRIDILV 338 NRR + ++ Sbjct: 191 NRRAEFVI 198 >gi|163800218|ref|ZP_02194119.1| hypothetical protein 1103602000595_AND4_06044 [Vibrio sp. AND4] gi|159175661|gb|EDP60455.1| hypothetical protein AND4_06044 [Vibrio sp. AND4] Length = 298 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAY 296 FD S+ L + + I+I GHTD F+ N +LS+ RA S Sbjct: 62 FDFDESVIREADAASLDAFIRDIQGLSGRITIVGHTD---FKGSDEYNEKLSMRRAESVK 118 Query: 297 QVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRR 333 L + + ++ F + + SD + NRR Sbjct: 119 AYLEQQLDLDQYDWEVKHFGESQPLVLGESDQARAENRR 157 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAY 293 TP FD +S PE + L L I + GHTD N +L+ RA Sbjct: 188 TPHFDFDNSELKPEELSQLDDFIAKLQGLEGSIMVAGHTDQV---GALSYNEQLAERRAQ 244 Query: 294 SAYQVLMKSGVSEDRIS-KISGFAHHRLKIA--SDPMNSANRR 333 + L K+ + + + ++ F + I S N+ NRR Sbjct: 245 NVVAYL-KTKLDPSQFAWEVKAFGELQPVINEVSPQANALNRR 286 >gi|15803127|ref|NP_289158.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 EDL933] gi|15832722|ref|NP_311495.1| outer membrane lipoprotein [Escherichia coli O157:H7 str. Sakai] gi|168752055|ref|ZP_02777077.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113] gi|168762397|ref|ZP_02787404.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501] gi|168773468|ref|ZP_02798475.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196] gi|168778583|ref|ZP_02803590.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076] gi|195940199|ref|ZP_03085581.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. EC4024] gi|208807469|ref|ZP_03249806.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206] gi|208813697|ref|ZP_03255026.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045] gi|208820246|ref|ZP_03260566.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042] gi|209399323|ref|YP_002272076.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115] gi|217327416|ref|ZP_03443499.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588] gi|254794551|ref|YP_003079388.1| putative outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14359] gi|12517027|gb|AAG57716.1|AE005490_11 putative outer membrane protein [Escherichia coli O157:H7 str. EDL933] gi|13362939|dbj|BAB36891.1| putative outer membrane protein [Escherichia coli O157:H7 str. Sakai] gi|187770670|gb|EDU34514.1| OmpA family protein [Escherichia coli O157:H7 str. EC4196] gi|188014012|gb|EDU52134.1| OmpA family protein [Escherichia coli O157:H7 str. EC4113] gi|189003592|gb|EDU72578.1| OmpA family protein [Escherichia coli O157:H7 str. EC4076] gi|189367264|gb|EDU85680.1| OmpA family protein [Escherichia coli O157:H7 str. EC4501] gi|208727270|gb|EDZ76871.1| OmpA family protein [Escherichia coli O157:H7 str. EC4206] gi|208734974|gb|EDZ83661.1| OmpA family protein [Escherichia coli O157:H7 str. EC4045] gi|208740369|gb|EDZ88051.1| OmpA family protein [Escherichia coli O157:H7 str. EC4042] gi|209160723|gb|ACI38156.1| OmpA family protein [Escherichia coli O157:H7 str. EC4115] gi|209762580|gb|ACI79602.1| putative outer membrane protein [Escherichia coli] gi|209762582|gb|ACI79603.1| putative outer membrane protein [Escherichia coli] gi|209762586|gb|ACI79605.1| putative outer membrane protein [Escherichia coli] gi|217319783|gb|EEC28208.1| OmpA family protein [Escherichia coli O157:H7 str. TW14588] gi|254593951|gb|ACT73312.1| predicted outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14359] gi|320188940|gb|EFW63599.1| Integral membrane protein YfiB [Escherichia coli O157:H7 str. EC1212] gi|326344357|gb|EGD68115.1| Integral membrane protein YfiB [Escherichia coli O157:H7 str. 1125] gi|326347726|gb|EGD71443.1| Integral membrane protein YfiB [Escherichia coli O157:H7 str. 1044] Length = 160 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (3