RPSBLAST alignment of GI: 254780529 and protein with PDBid: 1r1m

>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 Length = 164

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 25/126 (19%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+  + + + + GHTD        + N  LS  RAY 
Sbjct: 18  LFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSD---KYNQALSERRAYV 74

Query: 295 AYQVLMKSGVSEDRISKIS--------------GFAHHRLKIASDPMNSA-------NRR 333
               L+ +GV   RIS +                 A    K++      A       +RR
Sbjct: 75  VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRR 134

Query: 334 IDILVE 339
           +D+ + 
Sbjct: 135 VDVKIR 140