RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]} Length = 140 Score = 36.8 bits (84), Expect = 0.003 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 25/126 (19%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + L+ + + + + GHTD N LS RAY Sbjct: 15 LFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDK---YNQALSERRAYV 71 Query: 295 AYQVLMKSGVSEDRISKIS---------------------GFAHHRLKIASDPMNSANRR 333 L+ +GV RIS + + + + A +RR Sbjct: 72 VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRR 131 Query: 334 IDILVE 339 +D+ + Sbjct: 132 VDVKIR 137 >d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi [TaxId: 556]} Length = 325 Score = 27.0 bits (59), Expect = 2.7 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + +D + A L+M + T D K I++YF+ + Sbjct: 290 GLVSDSLNPAHARILLMLALTRTSD--PKVIQEYFHTY 325 >d1l3la2 d.110.5.1 (A:2-169) Transcription factor TraR, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 168 Score = 26.6 bits (58), Expect = 3.5 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 12/63 (19%) Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-KIA 323 I I+ +A D + LDR A G H R+ + Sbjct: 114 TIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAA-----------TIGQIHARISFLR 162 Query: 324 SDP 326 + P Sbjct: 163 TTP 165 >d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes [TaxId: 844]} Length = 328 Score = 26.2 bits (57), Expect = 3.8 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 V + + A L+M + T D ++AI++ F+ Sbjct: 293 FVATESLNPQKARVLLMLALTKTSD--REAIQKIFS 326 >d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A [TaxId: 306]} Length = 330 Score = 25.9 bits (56), Expect = 5.5 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 V A + A L M + T D K +++ F + Sbjct: 295 WVVAHDLNPEKARILAMVAMTKTQD--SKELQRIFWEY 330 >d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter glutaminasificans [TaxId: 474]} Length = 331 Score = 25.5 bits (55), Expect = 7.6 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + A + A L+ + T+D K I+ F + Sbjct: 296 WIAAHDLNPQKARLLMALALTKTND--AKEIQNMFWNY 331 >d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli [TaxId: 562]} Length = 326 Score = 25.1 bits (54), Expect = 8.0 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 V + + A L+ + T D + I+Q FN Sbjct: 291 FVASGTLNPQKARVLLQLALTQTKD--PQQIQQIFN 324 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.131 0.366 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,197,984 Number of extensions: 54297 Number of successful extensions: 164 Number of sequences better than 10.0: 1 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 19 Length of query: 343 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 257 Effective length of database: 1,226,816 Effective search space: 315291712 Effective search space used: 315291712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (24.7 bits)