RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB
[Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)



>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
           C-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 140

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 25/126 (19%)

Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294
           +F         E    L+ + + L+  + + + + GHTD          N  LS  RAY 
Sbjct: 15  LFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDK---YNQALSERRAYV 71

Query: 295 AYQVLMKSGVSEDRISKIS---------------------GFAHHRLKIASDPMNSANRR 333
               L+ +GV   RIS +                        +  + + A       +RR
Sbjct: 72  VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRR 131

Query: 334 IDILVE 339
           +D+ + 
Sbjct: 132 VDVKIR 137


>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi
           [TaxId: 556]}
          Length = 325

 Score = 27.0 bits (59), Expect = 2.7
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
            + +D +    A  L+M  +  T D   K I++YF+ +
Sbjct: 290 GLVSDSLNPAHARILLMLALTRTSD--PKVIQEYFHTY 325


>d1l3la2 d.110.5.1 (A:2-169) Transcription factor TraR, N-terminal
           domain {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 168

 Score = 26.6 bits (58), Expect = 3.5
 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 12/63 (19%)

Query: 265 VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRL-KIA 323
            I I+          +A D   + LDR   A                  G  H R+  + 
Sbjct: 114 TIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAA-----------TIGQIHARISFLR 162

Query: 324 SDP 326
           + P
Sbjct: 163 TTP 165


>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
           [TaxId: 844]}
          Length = 328

 Score = 26.2 bits (57), Expect = 3.8
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            V  + +    A  L+M  +  T D  ++AI++ F+
Sbjct: 293 FVATESLNPQKARVLLMLALTKTSD--REAIQKIFS 326


>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
           [TaxId: 306]}
          Length = 330

 Score = 25.9 bits (56), Expect = 5.5
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
            V A  +    A  L M  +  T D   K +++ F  +
Sbjct: 295 WVVAHDLNPEKARILAMVAMTKTQD--SKELQRIFWEY 330


>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
           glutaminasificans [TaxId: 474]}
          Length = 331

 Score = 25.5 bits (55), Expect = 7.6
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72
            + A  +    A  L+   +  T+D   K I+  F  +
Sbjct: 296 WIAAHDLNPQKARLLMALALTKTND--AKEIQNMFWNY 331


>d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli
           [TaxId: 562]}
          Length = 326

 Score = 25.1 bits (54), Expect = 8.0
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 35  IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70
            V +  +    A  L+   +  T D   + I+Q FN
Sbjct: 291 FVASGTLNPQKARVLLQLALTQTKD--PQQIQQIFN 324


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,197,984
Number of extensions: 54297
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 19
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)