BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB
[Candidatus Liberibacter asiaticus str. psy62]
(343 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
str. psy62]
Length = 343
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD
Sbjct: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60
Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ
Sbjct: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120
Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK
Sbjct: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180
Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS
Sbjct: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240
Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM
Sbjct: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300
Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG
Sbjct: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343
>gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
Length = 190
Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309
+LQ I +L + VI+I+ HTD+ ++N +S +RA L++ GVS +R
Sbjct: 95 MLQLIATILNKFPSTVIAIQSHTDSI---GTLKNNLLISQERADVIKSYLIQRGVSSNRF 151
Query: 310 SKISGFAH 317
+ GFA+
Sbjct: 152 ISVRGFAY 159
>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
Length = 160
Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291
++ FD SS P I VL +G L H + + I GH D RN + L L R
Sbjct: 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFL-IEGHADELGSRN---SSIALGLRR 105
Query: 292 AYSAYQVLMKSGVSEDRI 309
AY+ + + G+S R+
Sbjct: 106 AYAVFNYFVARGISASRM 123
>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 864
Score = 26.2 bits (56), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPL 245
F TT TG+ ++I+D N+ K +S+ L
Sbjct: 668 FTTTPTGMFLNILDLSNSAKMPKGASMAL 696
>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF 277
V++++ GEV+ ++I H DA PF
Sbjct: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPF 428
>gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 492
Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 43 VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87
L+ F ++++ + DDD ++Q + F + ++ + +FD+Q
Sbjct: 276 ALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQ 320
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 23.5 bits (49), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157
+D S+ E+I + I N K YQR + + Y+ SQ + + ++ ++ +
Sbjct: 101 MDFSVIENIIFPQI---IAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAI 157
Query: 158 CKS 160
C++
Sbjct: 158 CRA 160
>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 503
Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
EH +NS+ R E K LE+ NK E L
Sbjct: 28 EHARNSVARRLESMKPRLPKEILERQFNKLEQAIL 62
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 247 ETIVVLQKIGEVLAHSTEVISIRGH 271
ETI+VL + V+ S ++SI+ +
Sbjct: 107 ETIIVLTTVSAVMCRSVNIMSIKDY 131
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,075
Number of Sequences: 1233
Number of extensions: 9263
Number of successful extensions: 40
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 17
length of query: 343
length of database: 328,796
effective HSP length: 75
effective length of query: 268
effective length of database: 236,321
effective search space: 63334028
effective search space used: 63334028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)