HHsearch alignment for GI: 254780530 and conserved domain: COG1317
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.75 E-value=0.056 Score=33.15 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23335789999999999999999999999999999999999999999999999999999999999999999989999999
Q gi|254780530|r 40 SIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRI 119 (216)
Q Consensus 40 ~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArI 119 (216)
T Consensus 60 ~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~-~~e~~~~li~~~~------------~~~~~~~~~~e~qLv~lvl~i 126 (234)
T COG1317 60 LQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR-VLERLAKLIAEFQ------------AELEALKEVVEKQLVQLVLEI 126 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998888778-9999999999999------------999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHH-HHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCC
Q ss_conf 99998779999--99999999-999995046876188848889999999845875000
Q gi|254780530|r 120 LKSVLDIGLSR--KAAIEFAA-VVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSA 174 (216)
Q Consensus 120 L~PvL~e~l~~--qAv~~la~-~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~ 174 (216)
T Consensus 127 a~~Vi~~~~~~~~~~ll~~v~e~L~~~~~~~~~i~l--~VnP~d~e~i~~~~~~~~~~ 182 (234)
T COG1317 127 ARKVIGKELELDPEALLAAVREALEEVPLFAAAITL--RVNPDDLEIIRQQLDEELSL 182 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEE--EECHHHHHHHHHHHHHHHHH
T ss_conf 999985653128899999999999971166667389--98888899999998888742