HHsearch alignment for GI: 254780530 and conserved domain: PRK05687
>PRK05687 fliH flagellar assembly protein H; Validated.
Probab=97.61 E-value=0.0074 Score=38.90 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3335789999999999999999999-9999-9999999999999999999999999--9999999999999999989999
Q gi|254780530|r 41 IADFQKEQDKAYQEGYNKAIHDREL-YWKS-KNDFIQRSHDNEIADLRELFESSTS--KAIAIAVRDSFKCFSDSLECEV 116 (216)
Q Consensus 41 ~iDveaer~eAya~G~a~a~~e~~~-~~e~-e~~~l~~~Ha~eLeelR~~~~ee~A--~~IA~~i~e~~~~le~~Is~~v 116 (216)
T Consensus 60 ~~ele~ir~~A~~eG~~~G~~eG~~~G~~~G~~eG~~~G~~qG~~e~~~~~~~~~~~l~~L~~~l~~~l~~~d~~i~~~L 139 (252)
T PRK05687 60 LEELEAIRQQAEEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEAQEQAAQLAARLQQLAEQFQEPLALLDSQIEKRL 139 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHH----CCCCCCEEEEECCHHHHHHHHHHCCCCC--CCEEEECCC-----
Q ss_conf 99999998779999999----99999999995----0468761888488899999998458750--005640589-----
Q gi|254780530|r 117 IRILKSVLDIGLSRKAA----IEFAAVVVDFL----KKGDCGKIVIHGPKNLHSLIEECLGEYS--SAVCYENAD----- 181 (216)
Q Consensus 117 ArIL~PvL~e~l~~qAv----~~la~~i~~~~----~dg~~~~I~V~GP~~L~e~L~~~Lg~~~--~~i~~~~ad----- 181 (216)
T Consensus 140 v~Lal-~lArqVi~~el~~~pe~Il~~vreal~~lP~~~~~--v~l~lhPdD~~~V~~~l~~el~~~~W~l~~D~~l~~G 216 (252)
T PRK05687 140 VQLAL-ELAKQVIGQELKTDPEAILAAVREVLQALPIFAGA--PQLRVNPDDLELVEALLGAELSEHGWRLLADPSLHRG 216 (252)
T ss_pred HHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--CEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 99999-99999999886059999999999999963145678--1799888899999998767776358368637875888
Q ss_pred CCEEEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf 842899968--2002113799999999
Q gi|254780530|r 182 TVEFSTKIF--GSVIKTRLESWLSDVK 206 (216)
Q Consensus 182 ~~Elsv~ig--etVieTRLaaW~~~Lk 206 (216)
T Consensus 217 GC~iet~~s~vDatletR~~~v~~~l~ 243 (252)
T PRK05687 217 GCRISAAEGDVDATLETRWQEVCRSLG 243 (252)
T ss_pred CEEEEECCCEEECCHHHHHHHHHHHHC
T ss_conf 869987895364229999999999866