HHsearch alignment for GI: 254780530 and conserved domain: PRK05687

>PRK05687 fliH flagellar assembly protein H; Validated.
Probab=97.61  E-value=0.0074  Score=38.90  Aligned_cols=163  Identities=11%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3335789999999999999999999-9999-9999999999999999999999999--9999999999999999989999
Q gi|254780530|r   41 IADFQKEQDKAYQEGYNKAIHDREL-YWKS-KNDFIQRSHDNEIADLRELFESSTS--KAIAIAVRDSFKCFSDSLECEV  116 (216)
Q Consensus        41 ~iDveaer~eAya~G~a~a~~e~~~-~~e~-e~~~l~~~Ha~eLeelR~~~~ee~A--~~IA~~i~e~~~~le~~Is~~v  116 (216)
T Consensus        60 ~~ele~ir~~A~~eG~~~G~~eG~~~G~~~G~~eG~~~G~~qG~~e~~~~~~~~~~~l~~L~~~l~~~l~~~d~~i~~~L  139 (252)
T PRK05687         60 LEELEAIRQQAEEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEAQEQAAQLAARLQQLAEQFQEPLALLDSQIEKRL  139 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999998999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHH----CCCCCCEEEEECCHHHHHHHHHHCCCCC--CCEEEECCC-----
Q ss_conf             99999998779999999----99999999995----0468761888488899999998458750--005640589-----
Q gi|254780530|r  117 IRILKSVLDIGLSRKAA----IEFAAVVVDFL----KKGDCGKIVIHGPKNLHSLIEECLGEYS--SAVCYENAD-----  181 (216)
Q Consensus       117 ArIL~PvL~e~l~~qAv----~~la~~i~~~~----~dg~~~~I~V~GP~~L~e~L~~~Lg~~~--~~i~~~~ad-----  181 (216)
T Consensus       140 v~Lal-~lArqVi~~el~~~pe~Il~~vreal~~lP~~~~~--v~l~lhPdD~~~V~~~l~~el~~~~W~l~~D~~l~~G  216 (252)
T PRK05687        140 VQLAL-ELAKQVIGQELKTDPEAILAAVREVLQALPIFAGA--PQLRVNPDDLELVEALLGAELSEHGWRLLADPSLHRG  216 (252)
T ss_pred             HHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--CEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             99999-99999999886059999999999999963145678--1799888899999998767776358368637875888


Q ss_pred             CCEEEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf             842899968--2002113799999999
Q gi|254780530|r  182 TVEFSTKIF--GSVIKTRLESWLSDVK  206 (216)
Q Consensus       182 ~~Elsv~ig--etVieTRLaaW~~~Lk  206 (216)
T Consensus       217 GC~iet~~s~vDatletR~~~v~~~l~  243 (252)
T PRK05687        217 GCRISAAEGDVDATLETRWQEVCRSLG  243 (252)
T ss_pred             CEEEEECCCEEECCHHHHHHHHHHHHC
T ss_conf             869987895364229999999999866