HHsearch alignment for GI: 254780530 and conserved domain: PRK06032

>PRK06032 fliH flagellar assembly protein H; Validated.
Probab=97.89  E-value=0.0027  Score=41.75  Aligned_cols=145  Identities=11%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             35789999999999999999999999999999999999999999999999999999999999999999989999999999
Q gi|254780530|r   43 DFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKS  122 (216)
Q Consensus        43 Dveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~P  122 (216)
T Consensus        31 ~~~~Ara~ay~~G~~aG~~eA~a~~e~~~A~AL~~ia~~l~~l~~~~~~~~~---------~~e~eav~lA~avaRkla~  101 (208)
T PRK06032         31 AVAAAEAAAYARGFAAGQREAAAQSERRLALALERIAIAMAGLLARLAAVED---------EMETEAAEVALAVARKIAG  101 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999998889999---------9999999999999999989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHHHCCCCC------CCEEEECCCC---CEEEEEECCC
Q ss_conf             987799999999999999999504-68761888488899999998458750------0056405898---4289996820
Q gi|254780530|r  123 VLDIGLSRKAAIEFAAVVVDFLKK-GDCGKIVIHGPKNLHSLIEECLGEYS------SAVCYENADT---VEFSTKIFGS  192 (216)
Q Consensus       123 vL~e~l~~qAv~~la~~i~~~~~d-g~~~~I~V~GP~~L~e~L~~~Lg~~~------~~i~~~~ad~---~Elsv~iget  192 (216)
T Consensus       102 ~ll~~~---p~a~v~a~v~e~l~~l~~~P~LvIrV~~~l~e~l~~~le~~a~~~Gf~Grl~i~~Dp~l~~GDcrieW~dG  178 (208)
T PRK06032        102 AALAAE---PLAEITALVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGFEGRLVVLADPDIAPGDCRIEWADG  178 (208)
T ss_pred             HHHHHC---CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCC
T ss_conf             999748---65889999999999874497289997876579999999999996698823898308998988658886797


Q ss_pred             HHHHHHH
Q ss_conf             0211379
Q gi|254780530|r  193 VIKTRLE  199 (216)
Q Consensus       193 VieTRLa  199 (216)
T Consensus       179 g~~rd~~  185 (208)
T PRK06032        179 GVVRERA  185 (208)
T ss_pred             CEEECHH
T ss_conf             7343799