HHsearch alignment for GI: 254780530 and conserved domain: PRK06032
>PRK06032 fliH flagellar assembly protein H; Validated.
Probab=97.89 E-value=0.0027 Score=41.75 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35789999999999999999999999999999999999999999999999999999999999999999989999999999
Q gi|254780530|r 43 DFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKS 122 (216)
Q Consensus 43 Dveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~P 122 (216)
T Consensus 31 ~~~~Ara~ay~~G~~aG~~eA~a~~e~~~A~AL~~ia~~l~~l~~~~~~~~~---------~~e~eav~lA~avaRkla~ 101 (208)
T PRK06032 31 AVAAAEAAAYARGFAAGQREAAAQSERRLALALERIAIAMAGLLARLAAVED---------EMETEAAEVALAVARKIAG 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999998889999---------9999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHHHCCCCC------CCEEEECCCC---CEEEEEECCC
Q ss_conf 987799999999999999999504-68761888488899999998458750------0056405898---4289996820
Q gi|254780530|r 123 VLDIGLSRKAAIEFAAVVVDFLKK-GDCGKIVIHGPKNLHSLIEECLGEYS------SAVCYENADT---VEFSTKIFGS 192 (216)
Q Consensus 123 vL~e~l~~qAv~~la~~i~~~~~d-g~~~~I~V~GP~~L~e~L~~~Lg~~~------~~i~~~~ad~---~Elsv~iget 192 (216)
T Consensus 102 ~ll~~~---p~a~v~a~v~e~l~~l~~~P~LvIrV~~~l~e~l~~~le~~a~~~Gf~Grl~i~~Dp~l~~GDcrieW~dG 178 (208)
T PRK06032 102 AALAAE---PLAEITALVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGFEGRLVVLADPDIAPGDCRIEWADG 178 (208)
T ss_pred HHHHHC---CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCC
T ss_conf 999748---65889999999999874497289997876579999999999996698823898308998988658886797
Q ss_pred HHHHHHH
Q ss_conf 0211379
Q gi|254780530|r 193 VIKTRLE 199 (216)
Q Consensus 193 VieTRLa 199 (216)
T Consensus 179 g~~rd~~ 185 (208)
T PRK06032 179 GVVRERA 185 (208)
T ss_pred CEEECHH
T ss_conf 7343799