HHsearch alignment for GI: 254780530 and conserved domain: PRK06328

>PRK06328 type III secretion system protein; Validated.
Probab=96.62  E-value=0.045  Score=33.78  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHCCCCCCC------
Q ss_conf             999999998999999999998779999--999999999999950-46876188848889999999845875000------
Q gi|254780530|r  104 SFKCFSDSLECEVIRILKSVLDIGLSR--KAAIEFAAVVVDFLK-KGDCGKIVIHGPKNLHSLIEECLGEYSSA------  174 (216)
Q Consensus       104 ~~~~le~~Is~~vArIL~PvL~e~l~~--qAv~~la~~i~~~~~-dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~------  174 (216)
T Consensus        86 ~~~~~e~~lv~lvl~aarKIIg~el~~~pe~vl~---iVr~aL~~vr~~~~V~IrV~P~d~~~V~~~~~~L~~~~~~~~~  162 (223)
T PRK06328         86 LRIQVKEALVPLAIASVKKIIGKELELHPETIVS---IISEALKELTQNKHIIIHVNPKDLAIVEQNRPELKKIVEYADS  162 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999999999999988887608899999---9999999986188179998887699999989999974677776


Q ss_pred             EEEECCC-----CCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf             5640589-----842899968--20021137999999999998
Q gi|254780530|r  175 VCYENAD-----TVEFSTKIF--GSVIKTRLESWLSDVKAKIV  210 (216)
Q Consensus       175 i~~~~ad-----~~Elsv~ig--etVieTRLaaW~~~Lkaav~  210 (216)
T Consensus       163 L~i~~D~~l~~GgCiIETe~G~VDAsldtQL~aL~~Al~~~Lk  205 (223)
T PRK06328        163 LILSPKADVTPGGCIIETEAGIVNAQLDVQLAALEKAFSTILK  205 (223)
T ss_pred             EEEEECCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf             2673089879998699558856961289999999999999997