HHsearch alignment for GI: 254780530 and conserved domain: PRK06328
>PRK06328 type III secretion system protein; Validated.
Probab=96.62 E-value=0.045 Score=33.78 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHCCCCCCC------
Q ss_conf 999999998999999999998779999--999999999999950-46876188848889999999845875000------
Q gi|254780530|r 104 SFKCFSDSLECEVIRILKSVLDIGLSR--KAAIEFAAVVVDFLK-KGDCGKIVIHGPKNLHSLIEECLGEYSSA------ 174 (216)
Q Consensus 104 ~~~~le~~Is~~vArIL~PvL~e~l~~--qAv~~la~~i~~~~~-dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~------ 174 (216)
T Consensus 86 ~~~~~e~~lv~lvl~aarKIIg~el~~~pe~vl~---iVr~aL~~vr~~~~V~IrV~P~d~~~V~~~~~~L~~~~~~~~~ 162 (223)
T PRK06328 86 LRIQVKEALVPLAIASVKKIIGKELELHPETIVS---IISEALKELTQNKHIIIHVNPKDLAIVEQNRPELKKIVEYADS 162 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999999988887608899999---9999999986188179998887699999989999974677776
Q ss_pred EEEECCC-----CCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf 5640589-----842899968--20021137999999999998
Q gi|254780530|r 175 VCYENAD-----TVEFSTKIF--GSVIKTRLESWLSDVKAKIV 210 (216)
Q Consensus 175 i~~~~ad-----~~Elsv~ig--etVieTRLaaW~~~Lkaav~ 210 (216)
T Consensus 163 L~i~~D~~l~~GgCiIETe~G~VDAsldtQL~aL~~Al~~~Lk 205 (223)
T PRK06328 163 LILSPKADVTPGGCIIETEAGIVNAQLDVQLAALEKAFSTILK 205 (223)
T ss_pred EEEEECCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf 2673089879998699558856961289999999999999997