HHsearch alignment for GI: 254780530 and conserved domain: PRK06937
>PRK06937 type III secretion system protein; Reviewed.
Probab=94.28 E-value=0.48 Score=27.01 Aligned_cols=104 Identities=7% Similarity=0.077 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33578999999999999999999999999999999999999999999999999999999999999999998999999999
Q gi|254780530|r 42 ADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILK 121 (216)
Q Consensus 42 iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~ 121 (216)
T Consensus 48 ~~A~~~~e~~~~~Gy~eG~~ea~~e~ae~i~~~----~~~~-------------------~~~~~~le~~l~~lv~~av~ 104 (204)
T PRK06937 48 AEAREVYEQQKQLGYEAGLDEARTEQAELILET----VLQC-------------------QEFYRGIEQQMSEVVLEAVR 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999----9999-------------------99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 9987799999999999999999504687618884888999999984587
Q gi|254780530|r 122 SVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGE 170 (216)
Q Consensus 122 PvL~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~ 170 (216)
T Consensus 105 kIlg~~d~~el~~~~v~~al~~v~~~~~v~I--~V~P~d~~~v~~~~~~ 151 (204)
T PRK06937 105 KILNDYDDVERTLQVVREALALVSNQKQVVV--RVAPDQAGAVREQIAK 151 (204)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCEEEE--EECHHHHHHHHHHHHH
T ss_conf 9865468389999999999999735973999--9994669999999999