HHsearch alignment for GI: 254780530 and conserved domain: PRK13386

>PRK13386 fliH flagellar assembly protein H; Provisional.
Probab=94.48  E-value=0.43  Score=27.29  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             HHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC---EEEEEEC----CCHHHHHHHHHHHHHHH
Q ss_conf             9999999504--6876188848889999999845875000564058984---2899968----20021137999999999
Q gi|254780530|r  137 AAVVVDFLKK--GDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTV---EFSTKIF----GSVIKTRLESWLSDVKA  207 (216)
Q Consensus       137 a~~i~~~~~d--g~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~---Elsv~ig----etVieTRLaaW~~~Lka  207 (216)
T Consensus       148 L~~vreaL~~LP~~~~~v~i~LnP~D~~~v~~~~~e~~~~W~L~aD~~L~~GgCrv~t~~s~vDasletRl~~v~~~l~~  227 (236)
T PRK13386        148 LALVEETLAALPDDPEQLKVHLNPAEFGRLKDLAPEKVQAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVKE  227 (236)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHH
T ss_conf             99999999847677888179989889999999744031286674479758888699858953531499999999999863


Q ss_pred             HHHHHHH
Q ss_conf             9988663
Q gi|254780530|r  208 KIVSQQV  214 (216)
Q Consensus       208 av~~~~~  214 (216)
T Consensus       228 ~l~~~~~  234 (236)
T PRK13386        228 HLLTEPH  234 (236)
T ss_pred             HCCCCCC
T ss_conf             1768899