HHsearch alignment for GI: 254780530 and conserved domain: PRK13386
>PRK13386 fliH flagellar assembly protein H; Provisional.
Probab=94.48 E-value=0.43 Score=27.29 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC---EEEEEEC----CCHHHHHHHHHHHHHHH
Q ss_conf 9999999504--6876188848889999999845875000564058984---2899968----20021137999999999
Q gi|254780530|r 137 AAVVVDFLKK--GDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTV---EFSTKIF----GSVIKTRLESWLSDVKA 207 (216)
Q Consensus 137 a~~i~~~~~d--g~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~---Elsv~ig----etVieTRLaaW~~~Lka 207 (216)
T Consensus 148 L~~vreaL~~LP~~~~~v~i~LnP~D~~~v~~~~~e~~~~W~L~aD~~L~~GgCrv~t~~s~vDasletRl~~v~~~l~~ 227 (236)
T PRK13386 148 LALVEETLAALPDDPEQLKVHLNPAEFGRLKDLAPEKVQAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVKE 227 (236)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHH
T ss_conf 99999999847677888179989889999999744031286674479758888699858953531499999999999863
Q ss_pred HHHHHHH
Q ss_conf 9988663
Q gi|254780530|r 208 KIVSQQV 214 (216)
Q Consensus 208 av~~~~~ 214 (216)
T Consensus 228 ~l~~~~~ 234 (236)
T PRK13386 228 HLLTEPH 234 (236)
T ss_pred HCCCCCC
T ss_conf 1768899