HHsearch alignment for GI: 254780530 and conserved domain: TIGR03321
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.02 E-value=0.0017 Score=43.17 Aligned_cols=152 Identities=11% Similarity=0.132 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999899999999999877999999999
Q gi|254780530|r 56 YNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDIGLSRKAAIE 135 (216)
Q Consensus 56 ~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e~l~~qAv~~ 135 (216)
T Consensus 73 ~~~~l~~A~~eAe~er~~ll~~Ar~eae~~r~~~~~~l~~E~~~~~~~l~~r~~~~~~~ia~k~L~~Lad~~le~~~v~~ 152 (246)
T TIGR03321 73 REVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDV 152 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999986632479999999
Q ss_pred HHHHHHH-----------HHCCCCCCEEEEEC-------CHHHHHHHHHHCCCCCCCEEEECCC--CCEEEEEECCCHHH
Q ss_conf 9999999-----------95046876188848-------8899999998458750005640589--84289996820021
Q gi|254780530|r 136 FAAVVVD-----------FLKKGDCGKIVIHG-------PKNLHSLIEECLGEYSSAVCYENAD--TVEFSTKIFGSVIK 195 (216)
Q Consensus 136 la~~i~~-----------~~~dg~~~~I~V~G-------P~~L~e~L~~~Lg~~~~~i~~~~ad--~~Elsv~igetVie 195 (216)
T Consensus 153 f~~rL~~l~~~~~~~l~~al~~~~~~v~v~sa~~L~~~~~~~i~~~l~~~lg~-~~~l~F~~dp~Li~GieL~~gg~~i~ 231 (246)
T TIGR03321 153 FVQRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTIRETLGP-EIRLRFQTEPDLIGGIELTAGGHKLA 231 (246)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCEEEEECCEEEE
T ss_conf 99998719998999999888568997288518999999999999999997388-88614642734004748876895330
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1379999999999
Q gi|254780530|r 196 TRLESWLSDVKAK 208 (216)
Q Consensus 196 TRLaaW~~~Lkaa 208 (216)
T Consensus 232 Ws~~~yL~~le~~ 244 (246)
T TIGR03321 232 WSVDDYLESLEED 244 (246)
T ss_pred CCHHHHHHHHHHH
T ss_conf 3499999999751