HHsearch alignment for GI: 254780530 and conserved domain: TIGR03321

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.02  E-value=0.0017  Score=43.17  Aligned_cols=152  Identities=11%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999899999999999877999999999
Q gi|254780530|r   56 YNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDIGLSRKAAIE  135 (216)
Q Consensus        56 ~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e~l~~qAv~~  135 (216)
T Consensus        73 ~~~~l~~A~~eAe~er~~ll~~Ar~eae~~r~~~~~~l~~E~~~~~~~l~~r~~~~~~~ia~k~L~~Lad~~le~~~v~~  152 (246)
T TIGR03321        73 REVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDV  152 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999999999999999999999999999986632479999999


Q ss_pred             HHHHHHH-----------HHCCCCCCEEEEEC-------CHHHHHHHHHHCCCCCCCEEEECCC--CCEEEEEECCCHHH
Q ss_conf             9999999-----------95046876188848-------8899999998458750005640589--84289996820021
Q gi|254780530|r  136 FAAVVVD-----------FLKKGDCGKIVIHG-------PKNLHSLIEECLGEYSSAVCYENAD--TVEFSTKIFGSVIK  195 (216)
Q Consensus       136 la~~i~~-----------~~~dg~~~~I~V~G-------P~~L~e~L~~~Lg~~~~~i~~~~ad--~~Elsv~igetVie  195 (216)
T Consensus       153 f~~rL~~l~~~~~~~l~~al~~~~~~v~v~sa~~L~~~~~~~i~~~l~~~lg~-~~~l~F~~dp~Li~GieL~~gg~~i~  231 (246)
T TIGR03321       153 FVQRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTIRETLGP-EIRLRFQTEPDLIGGIELTAGGHKLA  231 (246)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCEEEEECCEEEE
T ss_conf             99998719998999999888568997288518999999999999999997388-88614642734004748876895330


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1379999999999
Q gi|254780530|r  196 TRLESWLSDVKAK  208 (216)
Q Consensus       196 TRLaaW~~~Lkaa  208 (216)
T Consensus       232 Ws~~~yL~~le~~  244 (246)
T TIGR03321       232 WSVDDYLESLEED  244 (246)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             3499999999751