Query gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs 32 out of 34
Neff 4.3
Searched_HMMs 39220
Date Sun May 29 23:44:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03321 alt_F1F0_F0_B altern 98.0 0.0017 4.2E-08 43.2 20.6 152 56-208 73-244 (246)
2 PRK06032 fliH flagellar assemb 97.9 0.0027 7E-08 41.8 18.7 145 43-199 31-185 (208)
3 PRK05687 fliH flagellar assemb 97.6 0.0074 1.9E-07 38.9 19.6 163 41-206 60-243 (252)
4 COG1317 FliH Flagellar biosynt 96.7 0.056 1.4E-06 33.1 16.4 120 40-174 60-182 (234)
5 PRK06328 type III secretion sy 96.6 0.045 1.1E-06 33.8 10.4 104 104-210 86-205 (223)
6 PRK09098 type III secretion sy 94.8 0.36 9.1E-06 27.8 17.5 99 47-170 73-171 (229)
7 PRK06669 fliH flagellar assemb 94.6 0.4 1E-05 27.5 19.1 148 40-210 104-267 (268)
8 PRK13386 fliH flagellar assemb 94.5 0.43 1.1E-05 27.3 17.6 78 137-214 148-234 (236)
9 PRK06937 type III secretion sy 94.3 0.48 1.2E-05 27.0 17.7 104 42-170 48-151 (204)
10 pfam08549 SWI-SNF_Ssr4 Fungal 87.7 2.3 5.9E-05 22.5 7.5 71 13-87 324-396 (669)
11 PRK13428 F0F1 ATP synthase sub 63.4 12 0.0003 17.9 14.4 93 40-142 25-123 (445)
12 TIGR01198 pgl 6-phosphoglucono 56.9 15 0.00039 17.2 5.4 43 125-167 5-50 (251)
13 TIGR01356 aroA 3-phosphoshikim 56.3 12 0.00032 17.7 3.1 50 108-157 77-143 (444)
14 PRK11582 flagella biosynthesis 47.7 8.3 0.00021 18.9 1.0 12 4-15 10-21 (179)
15 PRK01005 V-type ATP synthase s 44.3 24 0.0006 15.9 15.6 96 66-165 46-149 (208)
16 pfam07455 Psu Phage polarity s 44.3 24 0.00061 15.9 11.6 98 55-152 22-143 (188)
17 KOG0679 consensus 43.0 14 0.00036 17.3 1.6 57 148-208 341-397 (426)
18 COG2875 CobM Precorrin-4 methy 40.0 27 0.0007 15.4 2.9 71 131-201 59-143 (254)
19 pfam06635 NolV Nodulation prot 34.4 34 0.00086 14.9 12.8 90 103-199 86-181 (207)
20 COG0548 ArgB Acetylglutamate k 31.3 34 0.00088 14.8 2.1 72 131-211 18-89 (265)
21 COG4148 ModC ABC-type molybdat 30.6 31 0.00078 15.1 1.7 39 165-204 293-331 (352)
22 pfam06386 GvpL_GvpF Gas vesicl 30.4 39 0.001 14.4 9.3 64 95-158 155-236 (246)
23 PRK01558 V-type ATP synthase s 28.7 42 0.0011 14.3 16.7 134 44-182 5-156 (198)
24 KOG4329 consensus 27.2 34 0.00087 14.8 1.5 71 29-99 13-83 (445)
25 TIGR02173 cyt_kin_arch cytidyl 25.4 22 0.00055 16.1 0.2 22 182-203 65-86 (173)
26 PRK00378 nucleoid-associated p 23.9 51 0.0013 13.7 3.2 28 143-170 305-333 (334)
27 TIGR02499 HrpE_YscL_not type I 23.3 52 0.0013 13.6 12.8 95 103-199 75-178 (183)
28 pfam04229 UPF0157 Uncharacteri 22.7 24 0.00061 15.9 -0.0 32 16-47 26-57 (167)
29 pfam10266 Strumpellin Heredita 21.7 56 0.0014 13.4 3.6 67 19-89 246-317 (1080)
30 TIGR01465 cobM_cbiF precorrin- 21.7 56 0.0014 13.4 2.4 68 132-199 56-137 (252)
31 COG1102 Cmk Cytidylate kinase 21.3 37 0.00095 14.6 0.7 16 189-204 73-88 (179)
No 1
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.02 E-value=0.0017 Score=43.17 Aligned_cols=152 Identities=11% Similarity=0.132 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999899999999999877999999999
Q gi|254780530|r 56 YNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDIGLSRKAAIE 135 (216)
Q Consensus 56 ~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e~l~~qAv~~ 135 (216)
.++-..++..+.+.++.++.+.-..|.+.+|.+|.+....--..-..+......+.+.+-+.++|..+-+..+..+.++-
T Consensus 73 ~~~~l~~A~~eAe~er~~ll~~Ar~eae~~r~~~~~~l~~E~~~~~~~l~~r~~~~~~~ia~k~L~~Lad~~le~~~v~~ 152 (246)
T TIGR03321 73 REVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDV 152 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999986632479999999
Q ss_pred HHHHHHH-----------HHCCCCCCEEEEEC-------CHHHHHHHHHHCCCCCCCEEEECCC--CCEEEEEECCCHHH
Q ss_conf 9999999-----------95046876188848-------8899999998458750005640589--84289996820021
Q gi|254780530|r 136 FAAVVVD-----------FLKKGDCGKIVIHG-------PKNLHSLIEECLGEYSSAVCYENAD--TVEFSTKIFGSVIK 195 (216)
Q Consensus 136 la~~i~~-----------~~~dg~~~~I~V~G-------P~~L~e~L~~~Lg~~~~~i~~~~ad--~~Elsv~igetVie 195 (216)
|...|+. .+.++..+.++.++ ...+-+.|.+.||. ...+.|...+ .+-+...+|+..|.
T Consensus 153 f~~rL~~l~~~~~~~l~~al~~~~~~v~v~sa~~L~~~~~~~i~~~l~~~lg~-~~~l~F~~dp~Li~GieL~~gg~~i~ 231 (246)
T TIGR03321 153 FVQRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTIRETLGP-EIRLRFQTEPDLIGGIELTAGGHKLA 231 (246)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCEEEEECCEEEE
T ss_conf 99998719998999999888568997288518999999999999999997388-88614642734004748876895330
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1379999999999
Q gi|254780530|r 196 TRLESWLSDVKAK 208 (216)
Q Consensus 196 TRLaaW~~~Lkaa 208 (216)
=.+...+++|...
T Consensus 232 Ws~~~yL~~le~~ 244 (246)
T TIGR03321 232 WSVDDYLESLEED 244 (246)
T ss_pred CCHHHHHHHHHHH
T ss_conf 3499999999751
No 2
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=97.89 E-value=0.0027 Score=41.75 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35789999999999999999999999999999999999999999999999999999999999999999989999999999
Q gi|254780530|r 43 DFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKS 122 (216)
Q Consensus 43 Dveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~P 122 (216)
-+.+-|.++|++|+++|..++....++......+.-+..+..+-..+..... .+..-...++-.++|-|.|
T Consensus 31 ~~~~Ara~ay~~G~~aG~~eA~a~~e~~~A~AL~~ia~~l~~l~~~~~~~~~---------~~e~eav~lA~avaRkla~ 101 (208)
T PRK06032 31 AVAAAEAAAYARGFAAGQREAAAQSERRLALALERIAIAMAGLLARLAAVED---------EMETEAAEVALAVARKIAG 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999998889999---------9999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHHHCCCCC------CCEEEECCCC---CEEEEEECCC
Q ss_conf 987799999999999999999504-68761888488899999998458750------0056405898---4289996820
Q gi|254780530|r 123 VLDIGLSRKAAIEFAAVVVDFLKK-GDCGKIVIHGPKNLHSLIEECLGEYS------SAVCYENADT---VEFSTKIFGS 192 (216)
Q Consensus 123 vL~e~l~~qAv~~la~~i~~~~~d-g~~~~I~V~GP~~L~e~L~~~Lg~~~------~~i~~~~ad~---~Elsv~iget 192 (216)
-+-+.. .++++-..++..+.. -..|.|+|+=|+.|.+.+++++.... -.+.+...++ -|.+++-++-
T Consensus 102 ~ll~~~---p~a~v~a~v~e~l~~l~~~P~LvIrV~~~l~e~l~~~le~~a~~~Gf~Grl~i~~Dp~l~~GDcrieW~dG 178 (208)
T PRK06032 102 AALAAE---PLAEITALVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGFEGRLVVLADPDIAPGDCRIEWADG 178 (208)
T ss_pred HHHHHC---CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCC
T ss_conf 999748---65889999999999874497289997876579999999999996698823898308998988658886797
Q ss_pred HHHHHHH
Q ss_conf 0211379
Q gi|254780530|r 193 VIKTRLE 199 (216)
Q Consensus 193 VieTRLa 199 (216)
-++--..
T Consensus 179 g~~rd~~ 185 (208)
T PRK06032 179 GVVRERA 185 (208)
T ss_pred CEEECHH
T ss_conf 7343799
No 3
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=97.61 E-value=0.0074 Score=38.90 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3335789999999999999999999-9999-9999999999999999999999999--9999999999999999989999
Q gi|254780530|r 41 IADFQKEQDKAYQEGYNKAIHDREL-YWKS-KNDFIQRSHDNEIADLRELFESSTS--KAIAIAVRDSFKCFSDSLECEV 116 (216)
Q Consensus 41 ~iDveaer~eAya~G~a~a~~e~~~-~~e~-e~~~l~~~Ha~eLeelR~~~~ee~A--~~IA~~i~e~~~~le~~Is~~v 116 (216)
.-++++-|+.||++||+.|+++-.. .|++ ...-+.+-|..-+++.+.-.....+ ..|...|...+..+...|+.+.
T Consensus 60 ~~ele~ir~~A~~eG~~~G~~eG~~~G~~~G~~eG~~~G~~qG~~e~~~~~~~~~~~l~~L~~~l~~~l~~~d~~i~~~L 139 (252)
T PRK05687 60 LEELEAIRQQAEEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEAQEQAAQLAARLQQLAEQFQEPLALLDSQIEKRL 139 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHH----CCCCCCEEEEECCHHHHHHHHHHCCCCC--CCEEEECCC-----
Q ss_conf 99999998779999999----99999999995----0468761888488899999998458750--005640589-----
Q gi|254780530|r 117 IRILKSVLDIGLSRKAA----IEFAAVVVDFL----KKGDCGKIVIHGPKNLHSLIEECLGEYS--SAVCYENAD----- 181 (216)
Q Consensus 117 ArIL~PvL~e~l~~qAv----~~la~~i~~~~----~dg~~~~I~V~GP~~L~e~L~~~Lg~~~--~~i~~~~ad----- 181 (216)
..+-. -|...+.++.+ ..+...|+..+ ..... |+|+=.++=+..+++++|..- .+.+....+
T Consensus 140 v~Lal-~lArqVi~~el~~~pe~Il~~vreal~~lP~~~~~--v~l~lhPdD~~~V~~~l~~el~~~~W~l~~D~~l~~G 216 (252)
T PRK05687 140 VQLAL-ELAKQVIGQELKTDPEAILAAVREVLQALPIFAGA--PQLRVNPDDLELVEALLGAELSEHGWRLLADPSLHRG 216 (252)
T ss_pred HHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--CEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 99999-99999999886059999999999999963145678--1799888899999998767776358368637875888
Q ss_pred CCEEEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf 842899968--2002113799999999
Q gi|254780530|r 182 TVEFSTKIF--GSVIKTRLESWLSDVK 206 (216)
Q Consensus 182 ~~Elsv~ig--etVieTRLaaW~~~Lk 206 (216)
+|-|+..-+ +..++||+..-+.+|.
T Consensus 217 GC~iet~~s~vDatletR~~~v~~~l~ 243 (252)
T PRK05687 217 GCRISAAEGDVDATLETRWQEVCRSLG 243 (252)
T ss_pred CEEEEECCCEEECCHHHHHHHHHHHHC
T ss_conf 869987895364229999999999866
No 4
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.75 E-value=0.056 Score=33.15 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23335789999999999999999999999999999999999999999999999999999999999999999989999999
Q gi|254780530|r 40 SIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRI 119 (216)
Q Consensus 40 ~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArI 119 (216)
.--.++..++++|++|++.|+.+-......+.. +.+++..-+.... ..+...-+.++..|..-+..|
T Consensus 60 ~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~-~~e~~~~li~~~~------------~~~~~~~~~~e~qLv~lvl~i 126 (234)
T COG1317 60 LQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR-VLERLAKLIAEFQ------------AELEALKEVVEKQLVQLVLEI 126 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998888778-9999999999999------------999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHH-HHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCC
Q ss_conf 99998779999--99999999-999995046876188848889999999845875000
Q gi|254780530|r 120 LKSVLDIGLSR--KAAIEFAA-VVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSA 174 (216)
Q Consensus 120 L~PvL~e~l~~--qAv~~la~-~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~ 174 (216)
..=|+...+.- .++..... .|.....-...+.| +=.++=++.++++++.....
T Consensus 127 a~~Vi~~~~~~~~~~ll~~v~e~L~~~~~~~~~i~l--~VnP~d~e~i~~~~~~~~~~ 182 (234)
T COG1317 127 ARKVIGKELELDPEALLAAVREALEEVPLFAAAITL--RVNPDDLEIIRQQLDEELSL 182 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEE--EECHHHHHHHHHHHHHHHHH
T ss_conf 999985653128899999999999971166667389--98888899999998888742
No 5
>PRK06328 type III secretion system protein; Validated
Probab=96.62 E-value=0.045 Score=33.78 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHCCCCCCC------
Q ss_conf 999999998999999999998779999--999999999999950-46876188848889999999845875000------
Q gi|254780530|r 104 SFKCFSDSLECEVIRILKSVLDIGLSR--KAAIEFAAVVVDFLK-KGDCGKIVIHGPKNLHSLIEECLGEYSSA------ 174 (216)
Q Consensus 104 ~~~~le~~Is~~vArIL~PvL~e~l~~--qAv~~la~~i~~~~~-dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~------ 174 (216)
....+++.+..-+..+-.-+++.-+.. ..+.+ +++..+. -.+...|+|+=+++=++.+.++.......
T Consensus 86 ~~~~~e~~lv~lvl~aarKIIg~el~~~pe~vl~---iVr~aL~~vr~~~~V~IrV~P~d~~~V~~~~~~L~~~~~~~~~ 162 (223)
T PRK06328 86 LRIQVKEALVPLAIASVKKIIGKELELHPETIVS---IISEALKELTQNKHIIIHVNPKDLAIVEQNRPELKKIVEYADS 162 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999999988887608899999---9999999986188179998887699999989999974677776
Q ss_pred EEEECCC-----CCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf 5640589-----842899968--20021137999999999998
Q gi|254780530|r 175 VCYENAD-----TVEFSTKIF--GSVIKTRLESWLSDVKAKIV 210 (216)
Q Consensus 175 i~~~~ad-----~~Elsv~ig--etVieTRLaaW~~~Lkaav~ 210 (216)
+...+.+ +|=+..++| +.-|.|||.+.-..|...+=
T Consensus 163 L~i~~D~~l~~GgCiIETe~G~VDAsldtQL~aL~~Al~~~Lk 205 (223)
T PRK06328 163 LILSPKADVTPGGCIIETEAGIVNAQLDVQLAALEKAFSTILK 205 (223)
T ss_pred EEEEECCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf 2673089879998699558856961289999999999999997
No 6
>PRK09098 type III secretion system protein HrpB; Validated
Probab=94.84 E-value=0.36 Score=27.84 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999899999999999877
Q gi|254780530|r 47 EQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDI 126 (216)
Q Consensus 47 er~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e 126 (216)
|-..++++||++|.+....+|..+.......+.. ...++-+.|...+...|-+|+ .+
T Consensus 73 e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~-------------------~~~~m~~rLa~iV~~AVekIv----~~ 129 (229)
T PRK09098 73 EADRSARLGYAAGLRQALAEWHARGADHAFAERR-------------------AARRMRERLAEIVAAAVEQIV----HG 129 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH----HH
T ss_conf 9999999889999999999999999999999999-------------------999999999999999999999----71
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 99999999999999999504687618884888999999984587
Q gi|254780530|r 127 GLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGE 170 (216)
Q Consensus 127 ~l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~ 170 (216)
.-....+......+...+.+.....++|+ | +=++.++..++.
T Consensus 130 e~~~aL~~ra~~~l~~~v~~~~~l~VRVh-P-dD~d~ar~a~~~ 171 (229)
T PRK09098 130 EDPAALFARAAQTLEGVLDGASYLTVRVH-P-ADLDAARRAFGA 171 (229)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEC-H-HHHHHHHHHHHH
T ss_conf 39888999999999998624662899988-8-779999998999
No 7
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=94.63 E-value=0.4 Score=27.51 Aligned_cols=148 Identities=15% Similarity=0.196 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23335789999999999999999999999999999999999999999999999999999999999999999989999999
Q gi|254780530|r 40 SIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRI 119 (216)
Q Consensus 40 ~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArI 119 (216)
.---++..+.++|++||.+|+.++...|+..+..+..- ++.+ ...+.+.+...+..|..-+-.|
T Consensus 104 ~~~~le~a~~eG~eeG~e~G~~ea~~e~~~~i~~~~~i----le~~------------~~~~~~~l~~~E~elv~lal~I 167 (268)
T PRK06669 104 RKRLLEEAKAEGYEEGYEEGFEKAREEFQKLIDELKAI----LEEA------------IDEREEILESSEEEIVELALDI 167 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999----9999------------9999999999899999999999
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH-------CCCCCCCEEEECCCCCEEEEEEC
Q ss_conf 999987799--999999999999999504687618884888999999984-------58750005640589842899968
Q gi|254780530|r 120 LKSVLDIGL--SRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEEC-------LGEYSSAVCYENADTVEFSTKIF 190 (216)
Q Consensus 120 L~PvL~e~l--~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~-------Lg~~~~~i~~~~ad~~Elsv~ig 190 (216)
-.-|+.+-+ .+..+..++..+-.-+.+.....| +=.++=++.++++ |+. -..+...+.+ .+.-|
T Consensus 168 AkkVI~~~~~~~~~i~~~lvk~~l~evk~~~~I~I--~Vnp~Dye~v~e~k~el~~~l~~-~~~i~I~~D~----~l~~G 240 (268)
T PRK06669 168 AKKVIKEISENSKEVALALVKELLKEVKDATDITI--RVNPEDYEYVKEQKDELISLLDS-EAHLKIYEDE----AISKG 240 (268)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEE--EECHHHHHHHHHHHHHHHHHHCC-CCCEEEEECC----CCCCC
T ss_conf 99999999705899999999999997313781899--98888899999848999987457-7776997678----88999
Q ss_pred CCHHHH-------HHHHHHHHHHHHHH
Q ss_conf 200211-------37999999999998
Q gi|254780530|r 191 GSVIKT-------RLESWLSDVKAKIV 210 (216)
Q Consensus 191 etVieT-------RLaaW~~~Lkaav~ 210 (216)
..+|+| ++..=+..||.+++
T Consensus 241 gciIeTd~G~IDa~i~tqL~~ike~ll 267 (268)
T PRK06669 241 GCIIETDFGRIDARIDSQLKQLKEKLL 267 (268)
T ss_pred CEEEECCCCEEEHHHHHHHHHHHHHHC
T ss_conf 879966998053009999999999852
No 8
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=94.48 E-value=0.43 Score=27.29 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC---EEEEEEC----CCHHHHHHHHHHHHHHH
Q ss_conf 9999999504--6876188848889999999845875000564058984---2899968----20021137999999999
Q gi|254780530|r 137 AAVVVDFLKK--GDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTV---EFSTKIF----GSVIKTRLESWLSDVKA 207 (216)
Q Consensus 137 a~~i~~~~~d--g~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~---Elsv~ig----etVieTRLaaW~~~Lka 207 (216)
...|+..+.. .....|+|+=.++=++.++..+++...+.+.++.+.. +..|+-+ +..++||+..-++.|+.
T Consensus 148 L~~vreaL~~LP~~~~~v~i~LnP~D~~~v~~~~~e~~~~W~L~aD~~L~~GgCrv~t~~s~vDasletRl~~v~~~l~~ 227 (236)
T PRK13386 148 LALVEETLAALPDDPEQLKVHLNPAEFGRLKDLAPEKVQAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVKE 227 (236)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHH
T ss_conf 99999999847677888179989889999999744031286674479758888699858953531499999999999863
Q ss_pred HHHHHHH
Q ss_conf 9988663
Q gi|254780530|r 208 KIVSQQV 214 (216)
Q Consensus 208 av~~~~~ 214 (216)
-++.+..
T Consensus 228 ~l~~~~~ 234 (236)
T PRK13386 228 HLLTEPH 234 (236)
T ss_pred HCCCCCC
T ss_conf 1768899
No 9
>PRK06937 type III secretion system protein; Reviewed
Probab=94.28 E-value=0.48 Score=27.01 Aligned_cols=104 Identities=7% Similarity=0.077 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33578999999999999999999999999999999999999999999999999999999999999999998999999999
Q gi|254780530|r 42 ADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILK 121 (216)
Q Consensus 42 iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~ 121 (216)
-+.+.+..+++++||++|..+...+|...+... ..+. .+....+++.+..-+..+..
T Consensus 48 ~~A~~~~e~~~~~Gy~eG~~ea~~e~ae~i~~~----~~~~-------------------~~~~~~le~~l~~lv~~av~ 104 (204)
T PRK06937 48 AEAREVYEQQKQLGYEAGLDEARTEQAELILET----VLQC-------------------QEFYRGIEQQMSEVVLEAVR 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999----9999-------------------99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 9987799999999999999999504687618884888999999984587
Q gi|254780530|r 122 SVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGE 170 (216)
Q Consensus 122 PvL~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~ 170 (216)
.++++--....+..+....-..+.+.....| +=+++-.+.+.+.++.
T Consensus 105 kIlg~~d~~el~~~~v~~al~~v~~~~~v~I--~V~P~d~~~v~~~~~~ 151 (204)
T PRK06937 105 KILNDYDDVERTLQVVREALALVSNQKQVVV--RVAPDQAGAVREQIAK 151 (204)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCEEEE--EECHHHHHHHHHHHHH
T ss_conf 9865468389999999999999735973999--9994669999999999
No 10
>pfam08549 SWI-SNF_Ssr4 Fungal domain of unknown function (DUF1750). This is a fungal domain of unknown function.
Probab=87.73 E-value=2.3 Score=22.52 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=44.2
Q ss_pred CCHHCCCCCCCCHHHHHHCCCC-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2100038332342554201244-36444-233357899999999999999999999999999999999999999999
Q gi|254780530|r 13 SRLGSLSDKIVLSETIISNSTA-DVTFS-SIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRE 87 (216)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~ 87 (216)
||++||.+++.+.-.--+..-- +-+.. -+--.|.++-|-|+.-+++-.+ ...+|+++|+.+|++.|+..+.
T Consensus 324 GELesLT~G~FdAP~~~~~~~~~~~p~~~~~gklep~kAeeF~~RV~~kva----~~~aEIEkmKa~Hakrm~Kfkr 396 (669)
T pfam08549 324 GELESLTAGFFDAPVGPSTGDSDHGPEKPQATKLEPEVADEFADRVAKKVA----DMTAEIEKLKKRHARRMEKFNR 396 (669)
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 213232122213777777665556776544455687789999999999888----8899999999999999998630
No 11
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=63.40 E-value=12 Score=17.88 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 233357899999999999999999999999999999999999999999999------99999999999999999999989
Q gi|254780530|r 40 SIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFE------SSTSKAIAIAVRDSFKCFSDSLE 113 (216)
Q Consensus 40 ~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~------ee~A~~IA~~i~e~~~~le~~Is 113 (216)
++.-+=.+|+++...|.+++. +.++|.+...+.|.++|++.|.... .+.+..|...+++-...=..+|-
T Consensus 25 ~~~k~l~eR~daIeggie~Ae-----~Aqaea~~al~~y~~qLaeAr~EAa~IreeAr~~~~~I~ae~raqA~~Ea~RI~ 99 (445)
T PRK13428 25 PVRRLMAAQQDAVRQQLADSA-----TAADKLAEADQAHAKAVEDAKAEAHRVVEEARTDAERIAEQLRAQADVEAERIK 99 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999999998899999-----999999999999999999999999999999998899999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998779999999999999999
Q gi|254780530|r 114 CEVIRILKSVLDIGLSRKAAIEFAAVVVD 142 (216)
Q Consensus 114 ~~vArIL~PvL~e~l~~qAv~~la~~i~~ 142 (216)
.+-.+=+ +..+.|++.+|...+..
T Consensus 100 ~~g~~Qi-----ea~Rqq~v~~LR~e~G~ 123 (445)
T PRK13428 100 VQGARQV-----QLLRQQLIRQLRLELGH 123 (445)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_conf 9899999-----99999999999999879
No 12
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900 6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. 6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=56.92 E-value=15 Score=17.15 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf 77999999999999999995046876188848---88999999984
Q gi|254780530|r 125 DIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216)
Q Consensus 125 ~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216)
.+.+.+++++.++..+...+.+-.+..|.+|| |.-|++.|-++
T Consensus 5 ~~~~~~~l~~~~~~~~~~Al~~~~~~~~alSGGr~p~~L~~~La~~ 50 (251)
T TIGR01198 5 SAELAEALAERIATKLQKALAERGQFLLALSGGRSPIALLEALAAQ 50 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 7789999999999999999997689689982487457899997786
No 13
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate. Chorismate is last common precursor of all three aromatic amino acids. ; GO: 0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity.
Probab=56.29 E-value=12 Score=17.72 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HCCCCCCEEEEECC
Q ss_conf 999989999999999987-----------799999999999999999------50468761888488
Q gi|254780530|r 108 FSDSLECEVIRILKSVLD-----------IGLSRKAAIEFAAVVVDF------LKKGDCGKIVIHGP 157 (216)
Q Consensus 108 le~~Is~~vArIL~PvL~-----------e~l~~qAv~~la~~i~~~------~~dg~~~~I~V~GP 157 (216)
|.-.=|+.++|+|.|++. +.|.+|=...|...|+++ ...++.++|+|+||
T Consensus 77 l~~gNsGT~~R~l~g~la~~~~~~vl~Gd~SL~~RP~~~l~~aL~~lGa~i~~~~~~g~~Pl~i~G~ 143 (444)
T TIGR01356 77 LDLGNSGTTARLLTGVLALASGEVVLTGDESLRKRPMGRLVDALRQLGAEISSREGGGSLPLTISGP 143 (444)
T ss_pred EECCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEEECC
T ss_conf 6244627899999999985396189953610200887046799875695997607899545788888
No 14
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=47.71 E-value=8.3 Score=18.86 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCH
Q ss_conf 899998630210
Q gi|254780530|r 4 AVLSRLEDFSRL 15 (216)
Q Consensus 4 ~~~~~l~df~~~ 15 (216)
.++||||||---
T Consensus 10 pLsrYLkDfKhs 21 (179)
T PRK11582 10 PLSRYLKDFKHS 21 (179)
T ss_pred CHHHHHHHHHHC
T ss_conf 499999986451
No 15
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=44.29 E-value=24 Score=15.87 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999998999999999998779999-----9999999999
Q gi|254780530|r 66 YWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDIGLSR-----KAAIEFAAVV 140 (216)
Q Consensus 66 ~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e~l~~-----qAv~~la~~i 140 (216)
..+++.+.+...-..+-+.++..+....-..--+.+...-..++.+| ...++...+.+.+.+ +.+-+++...
T Consensus 46 ~Ae~eAe~il~~A~keAe~~~~~~~s~L~~A~rqav~aLk~~i~~~i---f~~~l~~~V~~~~~d~e~l~~LI~e~v~~~ 122 (208)
T PRK01005 46 EAQEEAQQIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENKI---FRESLVEWLEHVLTDPEVSAKLVQALVQAI 122 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999996799999999999999999999999---999999999998658999999999999986
Q ss_pred HHHHCCCCCCEEEE-E--CCHHHHHHHH
Q ss_conf 99950468761888-4--8889999999
Q gi|254780530|r 141 VDFLKKGDCGKIVI-H--GPKNLHSLIE 165 (216)
Q Consensus 141 ~~~~~dg~~~~I~V-~--GP~~L~e~L~ 165 (216)
..--..++ ..+.+ + .|..+.+.+.
T Consensus 123 ~~~~~~~~-~~~~i~~~~~~~~l~e~l~ 149 (208)
T PRK01005 123 EAQGISGN-LTAYIGKHVSARAVNELLG 149 (208)
T ss_pred HHCCCCCC-CCCCCCHHHCCCCHHHHHH
T ss_conf 44056667-6001455325300899999
No 16
>pfam07455 Psu Phage polarity suppression protein (Psu). This family contains a number of phage polarity suppression proteins (Psu) (approximately 190 residues long). The Psu protein of bacteriophage P4 causes suppression of transcriptional polarity in Escherichia coli by overcoming Rho termination factor activity.
Probab=44.25 E-value=24 Score=15.87 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999--------------99999999999999999999999899999999
Q gi|254780530|r 55 GYNKAIHDRELYWKSKNDFIQRSHDNEIADLREL--------------FESSTSKAIAIAVRDSFKCFSDSLECEVIRIL 120 (216)
Q Consensus 55 G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~--------------~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL 120 (216)
|+-..-+.++..|.+=+......-..+|+.+|.. |....-.++...++..++.|=|.-++..+-.|
T Consensus 22 ~~k~~la~ae~e~~~Ll~~~~~~~~~~l~~LRe~idVkkWeiNqaAgryI~SHe~vq~isir~~L~~FMQ~hG~~L~aaL 101 (188)
T pfam07455 22 GRKEELAAAEQEYRELLLAGEKSAARRLQLLREIIDVKKWEINQAAGRYIRSHEEVQHISIRDRLNDFMQQHGAELAAAL 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41889999999999998715887367899999998899999847888887889999999999999999998279999976
Q ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999877----------99999999999999999504687618
Q gi|254780530|r 121 KSVLDI----------GLSRKAAIEFAAVVVDFLKKGDCGKI 152 (216)
Q Consensus 121 ~PvL~e----------~l~~qAv~~la~~i~~~~~dg~~~~I 152 (216)
+|+|-. .-.++++.-|...|...+.-|+.+.+
T Consensus 102 APeLmg~~~q~~~~~~~aldra~~yLReAL~~~la~g~~I~Y 143 (188)
T pfam07455 102 APELMGYSEQTAAVKRCAMQRSVDYLREALSVWLAAGEKINY 143 (188)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 599708532508888767899999999999999971787661
No 17
>KOG0679 consensus
Probab=42.95 E-value=14 Score=17.33 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 8761888488899999998458750005640589842899968200211379999999999
Q gi|254780530|r 148 DCGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTVEFSTKIFGSVIKTRLESWLSDVKAK 208 (216)
Q Consensus 148 ~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~Elsv~igetVieTRLaaW~~~Lkaa 208 (216)
--..|.|+|-..|+.-+.++|-. -...++ ++--|++-.-++++++|.+.|++-.-.|
T Consensus 341 L~~nVivtGGtSliqG~s~RL~~-ELs~~~---P~srlki~as~~t~eR~~~~WlGGSILA 397 (426)
T KOG0679 341 LLGNVIVTGGTSLIQGFSERLNK-ELSKRA---PSSRLKIIASGHTVERRFQSWLGGSILA 397 (426)
T ss_pred HHCCEEEECCCCHHHHHHHHHHH-HHHHHC---CCCEEEEEECCCEEEEHHHHHHHHHHHH
T ss_conf 64558983684300557899999-998758---8641799854854210022233067875
No 18
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=40.04 E-value=27 Score=15.45 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCC-CEEEECCCC------------CEEEEE-ECCCHHHH
Q ss_conf 9999999999999504687618884888999999984587500-056405898------------428999-68200211
Q gi|254780530|r 131 KAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSS-AVCYENADT------------VEFSTK-IFGSVIKT 196 (216)
Q Consensus 131 qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~-~i~~~~ad~------------~Elsv~-igetVieT 196 (216)
..+++....+.....+|....=.-||-..+.-.+.+|.-.+.. +|.|.-.++ +|||+- +-+||+-|
T Consensus 59 ~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilT 138 (254)
T COG2875 59 LTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILT 138 (254)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEECCCCCEEEEEE
T ss_conf 88999999999999758808996269906888999999999976998599379059999999838544057741069997
Q ss_pred HHHHH
Q ss_conf 37999
Q gi|254780530|r 197 RLESW 201 (216)
Q Consensus 197 RLaaW 201 (216)
|.+.-
T Consensus 139 R~sgr 143 (254)
T COG2875 139 RPSGR 143 (254)
T ss_pred CCCCC
T ss_conf 13468
No 19
>pfam06635 NolV Nodulation protein NolV. This family consists of several nodulation protein NolV sequences from different Rhizobium species. The function of this family is unclear.
Probab=34.39 E-value=34 Score=14.87 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCHHHHHHHHHHCCCCCC-----CEE
Q ss_conf 999999999899999999999877999999999999999995-04687618884888999999984587500-----056
Q gi|254780530|r 103 DSFKCFSDSLECEVIRILKSVLDIGLSRKAAIEFAAVVVDFL-KKGDCGKIVIHGPKNLHSLIEECLGEYSS-----AVC 176 (216)
Q Consensus 103 e~~~~le~~Is~~vArIL~PvL~e~l~~qAv~~la~~i~~~~-~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~-----~i~ 176 (216)
+....+|+.+..-|-+++.-+|++-=...-+- ..+|+.+ .-.+...++++=++...+.|.+.+-+... .++
T Consensus 86 ~y~a~lE~~l~~lVle~vRkiLg~fD~~Ell~---r~vR~AL~~~~~~keV~LhV~P~~ae~la~~~ad~~~~~~~~~l~ 162 (207)
T pfam06635 86 QRKAVLEQELPQLVFEILRDLLGAFDPGELLV---MAVRHAIEQQYKGAEVCLHVSPLKADLLAREFADWDGLDGRPKLR 162 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999999999999999999986049488999---999999998733872899988888999999973310447886068
Q ss_pred EECCCCCEEEEEECCCHHHHHHH
Q ss_conf 40589842899968200211379
Q gi|254780530|r 177 YENADTVEFSTKIFGSVIKTRLE 199 (216)
Q Consensus 177 ~~~ad~~Elsv~igetVieTRLa 199 (216)
... |=..+-|+.|++|-.+
T Consensus 163 I~~----Dp~L~~~~cvLese~G 181 (207)
T pfam06635 163 IEA----DPALSADQCVLWSEFG 181 (207)
T ss_pred EEE----CCCCCCCCEEEECCCC
T ss_conf 721----8766877626643544
No 20
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=31.26 E-value=34 Score=14.80 Aligned_cols=72 Identities=17% Similarity=0.060 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999995046876188848889999999845875000564058984289996820021137999999999998
Q gi|254780530|r 131 KAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTVEFSTKIFGSVIKTRLESWLSDVKAKIV 210 (216)
Q Consensus 131 qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~Elsv~igetVieTRLaaW~~~Lkaav~ 210 (216)
.+..+|+.-|.-+-.-|..+ |.|+|--..++...+++|-.+.-+.- ++|+ ++.+++-=..+..+.+.-.++
T Consensus 18 ~l~~~~~~di~lL~~~G~~~-VvVHGggp~I~~~l~~~gie~~f~~g-------lRvT-d~~tlevv~mvl~G~vNk~iv 88 (265)
T COG0548 18 NLLEAFASDIALLKSVGIRP-VVVHGGGPQIDEMLAKLGIEPEFVKG-------LRVT-DAETLEVVEMVLGGTVNKEIV 88 (265)
T ss_pred HHHHHHHHHHHHHHHCCCCE-EEEECCCHHHHHHHHHCCCCCEEECC-------EECC-CHHHHHHHHHHHHHHHHHHHH
T ss_conf 27899999999999779947-99928956888999976999763497-------7767-989999999999888899999
Q ss_pred H
Q ss_conf 8
Q gi|254780530|r 211 S 211 (216)
Q Consensus 211 ~ 211 (216)
+
T Consensus 89 a 89 (265)
T COG0548 89 A 89 (265)
T ss_pred H
T ss_conf 9
No 21
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.61 E-value=31 Score=15.15 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 9845875000564058984289996820021137999999
Q gi|254780530|r 165 EECLGEYSSAVCYENADTVEFSTKIFGSVIKTRLESWLSD 204 (216)
Q Consensus 165 ~~~Lg~~~~~i~~~~ad~~Elsv~igetVieTRLaaW~~~ 204 (216)
.-.|+..-.+|... .+.+||.+.+|+-.|--|+..|+..
T Consensus 293 rNiLp~~v~~i~~~-~~~V~v~ld~~g~~l~Arit~~srd 331 (352)
T COG4148 293 RNILPGKVVGIEDD-DGQVDVQLDCGGKTLWARITPWARD 331 (352)
T ss_pred HHCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECHHHHH
T ss_conf 32154069999648-9827999963995888770575677
No 22
>pfam06386 GvpL_GvpF Gas vesicle synthesis protein GvpL/GvpF. This family consists of several bacterial and archaeal gas vesicle synthesis protein (GvpL/GvpF) sequences. The exact function of this family is unknown.
Probab=30.39 E-value=39 Score=14.45 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCC-CCCCEEEEEC
Q ss_conf 999999999999999998999999999998779999-----------------9999999999999504-6876188848
Q gi|254780530|r 95 KAIAIAVRDSFKCFSDSLECEVIRILKSVLDIGLSR-----------------KAAIEFAAVVVDFLKK-GDCGKIVIHG 156 (216)
Q Consensus 95 ~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e~l~~-----------------qAv~~la~~i~~~~~d-g~~~~I~V~G 156 (216)
..+-..+.+.+..-.+..+..+-..|.|+-.+...+ ..+++|...+..+... +++..++++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~a~~~~~~~~~~~~~vln~a~LV~~~~~~~F~~~v~~l~~~~~~~l~~~~tG 234 (246)
T pfam06386 155 IRLGQLIEEALRERRQELAEDILEALSPLAVEVRVNDPTGDRMVLNAAFLVEREREEEFDAAVEELDERYPDRLTIRYTG 234 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99889999999999999999999999999999850789998669999997201408999999999998678987999966
Q ss_pred CH
Q ss_conf 88
Q gi|254780530|r 157 PK 158 (216)
Q Consensus 157 P~ 158 (216)
|-
T Consensus 235 Pw 236 (246)
T pfam06386 235 PW 236 (246)
T ss_pred CC
T ss_conf 88
No 23
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=28.66 E-value=42 Score=14.26 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 578999999999999999999--------------999999999999999999999999999999999999999999999
Q gi|254780530|r 44 FQKEQDKAYQEGYNKAIHDRE--------------LYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFS 109 (216)
Q Consensus 44 veaer~eAya~G~a~a~~e~~--------------~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le 109 (216)
|+..=+.-|.+|+++|..++. ...+++.+.+...-..+-++++..-+.. +..+.++....+.
T Consensus 5 iq~Lidki~~eGVekg~~eA~~IIa~A~~~A~~Iv~~Ae~eAe~i~~~AekeA~~~k~~~~~a----L~~A~rd~ll~lk 80 (198)
T PRK01558 5 VKDLINKIKKDGLEEAERLANEIILNAKEEAEAIVLKAEEEAKELKAKAEKEANDYKRHSLEA----SRQAIRDLIIGFE 80 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_conf 999999999987889999999999999999999999999999999999999899999967999----9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH---HHHHHHHHCCC-CCCCEEEECCCC
Q ss_conf 99899999999999877999999999999999995046876188848889---99999984587-500056405898
Q gi|254780530|r 110 DSLECEVIRILKSVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKN---LHSLIEECLGE-YSSAVCYENADT 182 (216)
Q Consensus 110 ~~Is~~vArIL~PvL~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~---L~e~L~~~Lg~-~~~~i~~~~ad~ 182 (216)
+.|....-..+.-...+.+...-+..|--.+......++...| +-.|.+ |-..+...++. ...++.+...++
T Consensus 81 ~~i~~~~~~~v~~~v~~~~d~~~L~~lIl~v~~~w~~~e~i~i-~l~~~d~~~L~~~~~~~~k~~L~~Gv~i~~~~g 156 (198)
T PRK01558 81 KNLKSLFKAALKDEVAEVYDSNFLRELIIRVVDSWVKADKLDI-ILNESDLSNLESILRAALGNKLAAGIELKPFKG 156 (198)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEE-EECHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 9999999999999999863899999999999875264788168-847977999999999999999846955621478
No 24
>KOG4329 consensus
Probab=27.20 E-value=34 Score=14.83 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20124436444233357899999999999999999999999999999999999999999999999999999
Q gi|254780530|r 29 ISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAI 99 (216)
Q Consensus 29 ~~~~~~~~~~~~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~ 99 (216)
.+++-.|-+|++.+|.--.--+--..+-++...+...+.+.++..|+++-+--+.++...|--..+--|..
T Consensus 13 ~s~~sdDh~f~p~admlv~dfdde~tleEeel~d~e~~~e~ei~~l~re~dmp~~ella~yg~~a~~~i~~ 83 (445)
T KOG4329 13 PSSSSDDHTFEPTADMLVNDFDDEATLEEEELADMEAKAEDEIETLRRESDMPIRELLALYGYTAASPIME 83 (445)
T ss_pred CCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 55465655566108777411224300248661676402567799999852774899999855666774201
No 25
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=25.43 E-value=22 Score=16.13 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHH
Q ss_conf 8428999682002113799999
Q gi|254780530|r 182 TVEFSTKIFGSVIKTRLESWLS 203 (216)
Q Consensus 182 ~~Elsv~igetVieTRLaaW~~ 203 (216)
..|..-.-+..|||.||++|..
T Consensus 65 ~~E~A~~~~nvvlEsrlagW~~ 86 (173)
T TIGR02173 65 IREIAEKEKNVVLESRLAGWIL 86 (173)
T ss_pred HHHHHCCCCCEEEEEHHHHHHC
T ss_conf 8554304896688520543311
No 26
>PRK00378 nucleoid-associated protein NdpA; Validated
Probab=23.88 E-value=51 Score=13.69 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=16.2
Q ss_pred HHCCCCCCEEEEEC-CHHHHHHHHHHCCC
Q ss_conf 95046876188848-88999999984587
Q gi|254780530|r 143 FLKKGDCGKIVIHG-PKNLHSLIEECLGE 170 (216)
Q Consensus 143 ~~~dg~~~~I~V~G-P~~L~e~L~~~Lg~ 170 (216)
+.-|+....++|+| |++|.++|+..+..
T Consensus 305 I~yD~~~dtLtIk~~P~~LkdQL~r~~~~ 333 (334)
T PRK00378 305 IFYDPATDTLTIKGTPPNLRDQLQRRLKG 333 (334)
T ss_pred EEECCCCCEEEEECCCHHHHHHHHHHHCC
T ss_conf 78638899799808998999999997507
No 27
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family; InterPro: IPR012842 This entry is related to IPR009335 from INTERPRO, but is broader. IPR009335 from INTERPRO describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This entry also includes the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This entry excludes the related protein FliH of the bacterial flagellar apparatus (see IPR000563 from INTERPRO)..
Probab=23.32 E-value=52 Score=13.62 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEE-
Q ss_conf 9999999998999999999998779----99999999999999995046876188848889999999845875000564-
Q gi|254780530|r 103 DSFKCFSDSLECEVIRILKSVLDIG----LSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSAVCY- 177 (216)
Q Consensus 103 e~~~~le~~Is~~vArIL~PvL~e~----l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~- 177 (216)
+....+...+...|...|.-+|++- -..+-+..+.+.+-..+...+.+.++|+ |.+ ++.+++.|+.+...+..
T Consensus 75 ~~~~~~~~~~~~~v~~a~~~~l~~~~~qQ~~~~~~~~~lr~~~~~~~~~~~~~l~vh-P~~-~~~~~~~l~~~~~~~~~~ 152 (183)
T TIGR02499 75 QLEASLEERLAELVLQALEQILGETLGQQDESERLVRLLRQLLAAVANQERLTLRVH-PEQ-LDEVREALAELLALAPEF 152 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-HHH-HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999998656335899889999999999998744576346767-467-999999999888420246
Q ss_pred ECCC----CCEEEEEECCCHHHHHHH
Q ss_conf 0589----842899968200211379
Q gi|254780530|r 178 ENAD----TVEFSTKIFGSVIKTRLE 199 (216)
Q Consensus 178 ~~ad----~~Elsv~igetVieTRLa 199 (216)
.-.+ ..|=++.-|.-+++|-.+
T Consensus 153 ~~~~~~~l~~D~~l~~g~~~l~t~~G 178 (183)
T TIGR02499 153 GLVGKWELEPDASLAPGACVLETESG 178 (183)
T ss_pred CCCCHHCCCCCHHHCCCCEEEEECCC
T ss_conf 74210102760210788706750121
No 28
>pfam04229 UPF0157 Uncharacterized protein family (UPF0157). Also known as GrpB.
Probab=22.74 E-value=24 Score=15.86 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=26.6
Q ss_pred HCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 00383323425542012443644423335789
Q gi|254780530|r 16 GSLSDKIVLSETIISNSTADVTFSSIADFQKE 47 (216)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~iDveae 47 (216)
..|++.++.-+-++|-+-|.+.+-|+||+...
T Consensus 26 ~~l~~~~~~IeHIGSTsVpGl~AKpiIDI~v~ 57 (167)
T pfam04229 26 AALGDPALAIEHIGSTSVPGLAAKPIIDILVV 57 (167)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 86085233788626677898606762468987
No 29
>pfam10266 Strumpellin Hereditary spastic paraplegia protein strumpellin. This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies.
Probab=21.67 E-value=56 Score=13.41 Aligned_cols=67 Identities=7% Similarity=0.113 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8332342554201244-----3644423335789999999999999999999999999999999999999999999
Q gi|254780530|r 19 SDKIVLSETIISNSTA-----DVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELF 89 (216)
Q Consensus 19 ~~~~~~~~~~~~~~~~-----~~~~~~~iDveaer~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~ 89 (216)
...-+-|-+|-+.-|| .+-|+-++|.=-.= +.|-....+=- -.--....+.+.++|...+..+...+
T Consensus 246 ~~~~a~MREIVDk~F~DnWVi~~ymG~tvnL~~~W-~~ykAA~~Al~---nt~~~~~i~~~~~~~~~~~~~~~~~~ 317 (1080)
T pfam10266 246 NNQGAIMREIVDKHFADNWVISYYMGITVDLSVAW-EPFKAARTAIN---NTITQENVQYLCQRYRTSMAELLTSV 317 (1080)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCEEEEHHHHH-HCCHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 07860799998654678858996172787657467-42298999998---35688999999999999999999999
No 30
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=21.66 E-value=56 Score=13.41 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCC-CEEEECCCCC------------EEEE-EECCCHHHHH
Q ss_conf 999999999999504687618884888999999984587500-0564058984------------2899-9682002113
Q gi|254780530|r 132 AAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSS-AVCYENADTV------------EFST-KIFGSVIKTR 197 (216)
Q Consensus 132 Av~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~~~~-~i~~~~ad~~------------Elsv-~igetVieTR 197 (216)
.++++.+.+.+....|.-..=.=||=..+.-.+.+++-.+.. +|.|+-.+++ |||+ ++-+|||=||
T Consensus 56 ~L~ei~~~m~~a~~~GK~VvRLHsGDPsIYGA~~EQ~~~L~~~gI~~e~vPGvSsf~AAAA~l~~ELT~P~vsQtvilTR 135 (252)
T TIGR01465 56 SLEEIVDIMVDAVREGKLVVRLHSGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTR 135 (252)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 98899999999986698499985087557766999999998678977986887389899997300147884034244675
Q ss_pred HH
Q ss_conf 79
Q gi|254780530|r 198 LE 199 (216)
Q Consensus 198 La 199 (216)
++
T Consensus 136 ~e 137 (252)
T TIGR01465 136 AE 137 (252)
T ss_pred CC
T ss_conf 43
No 31
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=21.27 E-value=37 Score=14.59 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=8.8
Q ss_pred ECCCHHHHHHHHHHHH
Q ss_conf 6820021137999999
Q gi|254780530|r 189 IFGSVIKTRLESWLSD 204 (216)
Q Consensus 189 igetVieTRLaaW~~~ 204 (216)
-|..|++.||++|...
T Consensus 73 ~~nvVlegrLA~Wi~k 88 (179)
T COG1102 73 EGNVVLEGRLAGWIVR 88 (179)
T ss_pred CCCEEEHHHHHHHHHC
T ss_conf 2895870045788733
Done!