Query         gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs    32 out of 34
Neff          4.3 
Searched_HMMs 33803
Date          Wed Jun  1 17:10:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2nrk_A Hypothetical protein G  21.2      21 0.00062   15.8  -0.2   30   16-45     28-57  (173)
  2 >2cuy_A Malonyl COA-[acyl carr  19.1      55  0.0016   13.1   2.1   31  150-180    36-66  (70)
  3 >3lma_A Stage V sporulation pr  18.8      52  0.0015   13.2   1.4   24    3-26     47-70  (183)
  4 >2qfa_B Borealin; three-helica  17.9      49  0.0014   13.4   1.1   15   70-84      6-20  (62)
  5 >3g87_A Malonyl COA-acyl carri  17.9      58  0.0017   12.9   3.2   34  148-181    35-68  (71)
  6 >1nm2_A Malonyl COA:acyl carri  17.0      61  0.0018   12.8   3.4   34  148-181    31-64  (67)
  7 >1n91_A ORF, hypothetical prot  14.8      34   0.001   14.4  -0.4   35  147-181    35-76  (108)
  8 >3itw_A Protein TIOX; bleomyci  13.8      73  0.0022   12.2   3.6   46  149-194     5-50  (61)
  9 >2c5z_A SET domain protein 2;   13.4      47  0.0014   13.5   0.0   48  101-148    10-58  (104)
 10 >3hhd_A Fatty acid synthase; t  13.1      77  0.0023   12.1   2.5   36  146-181    29-64  (78)

No 1  
>>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} (A:)
Probab=21.20  E-value=21  Score=15.79  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=16.3

Q ss_pred             HCCCCCCCCHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             003833234255420124436444233357
Q gi|254780530|r   16 GSLSDKIVLSETIISNSTADVTFSSIADFQ   45 (216)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~iDve   45 (216)
                      ..|++.++.-+-|+|-+-|.+.+.|+|||.
T Consensus        28 ~~l~~~~~~IeHIGSTsVpgl~AKpiIDI~   57 (173)
T 2nrk_A           28 QILKENCLKVEHIGSTSVPNLAAKPIIDFL   57 (173)
T ss_dssp             HHHGGGEEEEEEESGGGSTTCCBCSCEEEE
T ss_pred             HHCCCCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             853864226886335756897457625799


No 2  
>>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} (A:124-193)
Probab=19.06  E-value=55  Score=13.05  Aligned_cols=31  Identities=23%  Similarity=0.229  Sum_probs=21.3

Q ss_pred             CEEEEECCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf             6188848889999999845875000564058
Q gi|254780530|r  150 GKIVIHGPKNLHSLIEECLGEYSSAVCYENA  180 (216)
Q Consensus       150 ~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~a  180 (216)
                      ..++|+||.+=++.+.++|..+...++....
T Consensus        36 ~~~VisG~~~~i~~~~~~l~~~gi~~~~L~v   66 (70)
T 2cuy_A           36 EQTVISGRRQAVEEAAERLKERRARVVFLPV   66 (70)
T ss_dssp             TEEEEEEEHHHHHHHHHHHHHTTCEEEECSC
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCEEEECCC
T ss_conf             8768612532035777766522843553588


No 3  
>>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} (A:1-13,A:178-347)
Probab=18.81  E-value=52  Score=13.19  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHCCHHCCCCCCCCHH
Q ss_conf             689999863021000383323425
Q gi|254780530|r    3 DAVLSRLEDFSRLGSLSDKIVLSE   26 (216)
Q Consensus         3 ~~~~~~l~df~~~~~~~~~~~~~~   26 (216)
                      ++|.++++||++.++--|-|+--|
T Consensus        47 dTI~~hf~Dtg~~p~dYDlIvTGD   70 (183)
T 3lma_A           47 DTIKQHLEDLGRTPDDYDLILTGD   70 (183)
T ss_dssp             HHHHHHHHHHTCCGGGCSEEEEES
T ss_pred             HHHHHHHHHCCCCHHHEEEEECCC
T ss_conf             999999998099978957893688


No 4  
>>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} (B:)
Probab=17.91  E-value=49  Score=13.38  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780530|r   70 KNDFIQRSHDNEIAD   84 (216)
Q Consensus        70 e~~~l~~~Ha~eLee   84 (216)
                      +++.-.+.|+.|.+.
T Consensus         6 KL~~FLkDFD~eV~~   20 (62)
T 2qfa_B            6 KLASFLKDFDREVEI   20 (62)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999998899999


No 5  
>>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltransferase, transferase; 2.30A {Burkholderia pseudomallei 1710B} (A:125-195)
Probab=17.91  E-value=58  Score=12.89  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=25.8

Q ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             8761888488899999998458750005640589
Q gi|254780530|r  148 DCGKIVIHGPKNLHSLIEECLGEYSSAVCYENAD  181 (216)
Q Consensus       148 ~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad  181 (216)
                      .-..++|+||.+-++.+.+.|......++....+
T Consensus        35 sp~~~VIsG~~~ai~~~~~~l~~~gi~~~~L~v~   68 (71)
T 3g87_A           35 TPSQLVISGPAHEIARAEALFQHDRVRYLRLNTS   68 (71)
T ss_dssp             ETTEEEEEEEHHHHHHHGGGSCSSSCEEEECSCS
T ss_pred             CHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             6566322431134678887565338478751565


No 6  
>>1nm2_A Malonyl COA:acyl carrier protein malonyltransferase; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor A3} (A:135-201)
Probab=17.04  E-value=61  Score=12.75  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             8761888488899999998458750005640589
Q gi|254780530|r  148 DCGKIVIHGPKNLHSLIEECLGEYSSAVCYENAD  181 (216)
Q Consensus       148 ~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad  181 (216)
                      .-..++|+||.+-++.+.+.|-.+...++.-+.+
T Consensus        31 sp~~~visG~~~~i~~~~~~l~~~gi~~~~L~v~   64 (67)
T 1nm2_A           31 GAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVA   64 (67)
T ss_dssp             ETTEEEEEEEHHHHHHHHHSCCTTEEEEEECSCS
T ss_pred             CCCCEEECCCHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             9988892586999999987402216379983467


No 7  
>>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, protein structure initiative, NESG; NMR {Escherichia coli O157} (A:)
Probab=14.82  E-value=34  Score=14.38  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=16.4

Q ss_pred             CCCCEEEEECCH-------HHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             687618884888-------99999998458750005640589
Q gi|254780530|r  147 GDCGKIVIHGPK-------NLHSLIEECLGEYSSAVCYENAD  181 (216)
Q Consensus       147 g~~~~I~V~GP~-------~L~e~L~~~Lg~~~~~i~~~~ad  181 (216)
                      +....|+|+.|+       .|++.|.+.|+-+.+.|...-..
T Consensus        35 ~~~l~v~v~app~~GkAN~~li~~Lak~l~v~ks~I~i~~G~   76 (108)
T 1n91_A           35 GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGE   76 (108)
T ss_dssp             SSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHEEEEEECC
T ss_conf             887999996699787078999999999959970008998637


No 8  
>>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed Trp residue, thiocoraline, protein binding, peptide binding protein; 2.15A {Micromonospora SP} (A:1-61)
Probab=13.83  E-value=73  Score=12.22  Aligned_cols=46  Identities=7%  Similarity=-0.023  Sum_probs=32.8

Q ss_pred             CCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCHH
Q ss_conf             7618884888999999984587500056405898428999682002
Q gi|254780530|r  149 CGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTVEFSTKIFGSVI  194 (216)
Q Consensus       149 ~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~Elsv~igetVi  194 (216)
                      -|-|.+++++..++-+++.+|.....+--......--.+.+|+++|
T Consensus         5 ~PyL~~~~~~~Ai~fy~~afGae~~~~~~~dg~v~HAeL~ig~~~i   50 (61)
T 3itw_A            5 VVELAYTDPDRAVDWLVRVFGFRLLLRQPAIGTIRHADLDTGGGIV   50 (61)
T ss_dssp             EEEEEESCHHHHHHHHHHHHCCEEEEEESSSSSCSEEEEECSSSEE
T ss_pred             EEEEECCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCEEE
T ss_conf             9999829999999999984698898770667648999998599999


No 9  
>>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae} (A:)
Probab=13.41  E-value=47  Score=13.51  Aligned_cols=48  Identities=10%  Similarity=0.085  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999899999999999877-9999999999999999950468
Q gi|254780530|r  101 VRDSFKCFSDSLECEVIRILKSVLDI-GLSRKAAIEFAAVVVDFLKKGD  148 (216)
Q Consensus       101 i~e~~~~le~~Is~~vArIL~PvL~e-~l~~qAv~~la~~i~~~~~dg~  148 (216)
                      ...+...+...|+.-|..+|.|+=.+ .|.+.....+|..|...+...+
T Consensus        10 ~~k~~~~f~~~la~~V~~~L~~y~k~~kl~rEd~K~~aKkl~~~i~~ke   58 (104)
T 2c5z_A           10 SQRLEHNWNKFFASFVPNLIKKNPQSKQFDHENIKQCAKDIVKILTTKE   58 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             8889999999999983799987266501877899999999999998998


No 10 
>>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:617-685,A:744-752)
Probab=13.15  E-value=77  Score=12.09  Aligned_cols=36  Identities=14%  Similarity=0.039  Sum_probs=26.5

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             468761888488899999998458750005640589
Q gi|254780530|r  146 KGDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENAD  181 (216)
Q Consensus       146 dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad  181 (216)
                      .+.-..++|+||.+=++.+.+.|..+...++....+
T Consensus        29 ~Nsp~q~VisG~~~~i~~l~~~l~~~gi~~~~L~v~   64 (78)
T 3hhd_A           29 HNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTG   64 (78)
T ss_dssp             EEETTEEEEEEEHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred             ECCCCEEEEECCHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             648986999897899999998888669069989988


Done!