Query gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 216 No_of_seqs 32 out of 34 Neff 4.3 Searched_HMMs 33803 Date Wed Jun 1 17:10:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2nrk_A Hypothetical protein G 21.2 21 0.00062 15.8 -0.2 30 16-45 28-57 (173) 2 >2cuy_A Malonyl COA-[acyl carr 19.1 55 0.0016 13.1 2.1 31 150-180 36-66 (70) 3 >3lma_A Stage V sporulation pr 18.8 52 0.0015 13.2 1.4 24 3-26 47-70 (183) 4 >2qfa_B Borealin; three-helica 17.9 49 0.0014 13.4 1.1 15 70-84 6-20 (62) 5 >3g87_A Malonyl COA-acyl carri 17.9 58 0.0017 12.9 3.2 34 148-181 35-68 (71) 6 >1nm2_A Malonyl COA:acyl carri 17.0 61 0.0018 12.8 3.4 34 148-181 31-64 (67) 7 >1n91_A ORF, hypothetical prot 14.8 34 0.001 14.4 -0.4 35 147-181 35-76 (108) 8 >3itw_A Protein TIOX; bleomyci 13.8 73 0.0022 12.2 3.6 46 149-194 5-50 (61) 9 >2c5z_A SET domain protein 2; 13.4 47 0.0014 13.5 0.0 48 101-148 10-58 (104) 10 >3hhd_A Fatty acid synthase; t 13.1 77 0.0023 12.1 2.5 36 146-181 29-64 (78) No 1 >>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} (A:) Probab=21.20 E-value=21 Score=15.79 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=16.3 Q ss_pred HCCCCCCCCHHHHHHCCCCCCCCCCCCCHH Q ss_conf 003833234255420124436444233357 Q gi|254780530|r 16 GSLSDKIVLSETIISNSTADVTFSSIADFQ 45 (216) Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~iDve 45 (216) ..|++.++.-+-|+|-+-|.+.+.|+|||. T Consensus 28 ~~l~~~~~~IeHIGSTsVpgl~AKpiIDI~ 57 (173) T 2nrk_A 28 QILKENCLKVEHIGSTSVPNLAAKPIIDFL 57 (173) T ss_dssp HHHGGGEEEEEEESGGGSTTCCBCSCEEEE T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCEEEEE T ss_conf 853864226886335756897457625799 No 2 >>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} (A:124-193) Probab=19.06 E-value=55 Score=13.05 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=21.3 Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCEEEECC Q ss_conf 6188848889999999845875000564058 Q gi|254780530|r 150 GKIVIHGPKNLHSLIEECLGEYSSAVCYENA 180 (216) Q Consensus 150 ~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~a 180 (216) ..++|+||.+=++.+.++|..+...++.... T Consensus 36 ~~~VisG~~~~i~~~~~~l~~~gi~~~~L~v 66 (70) T 2cuy_A 36 EQTVISGRRQAVEEAAERLKERRARVVFLPV 66 (70) T ss_dssp TEEEEEEEHHHHHHHHHHHHHTTCEEEECSC T ss_pred CCEEEECCCCCHHHHHHHHHHCCCEEEECCC T ss_conf 8768612532035777766522843553588 No 3 >>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} (A:1-13,A:178-347) Probab=18.81 E-value=52 Score=13.19 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=17.8 Q ss_pred HHHHHHHHHHCCHHCCCCCCCCHH Q ss_conf 689999863021000383323425 Q gi|254780530|r 3 DAVLSRLEDFSRLGSLSDKIVLSE 26 (216) Q Consensus 3 ~~~~~~l~df~~~~~~~~~~~~~~ 26 (216) ++|.++++||++.++--|-|+--| T Consensus 47 dTI~~hf~Dtg~~p~dYDlIvTGD 70 (183) T 3lma_A 47 DTIKQHLEDLGRTPDDYDLILTGD 70 (183) T ss_dssp HHHHHHHHHHTCCGGGCSEEEEES T ss_pred HHHHHHHHHCCCCHHHEEEEECCC T ss_conf 999999998099978957893688 No 4 >>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} (B:) Probab=17.91 E-value=49 Score=13.38 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=5.7 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780530|r 70 KNDFIQRSHDNEIAD 84 (216) Q Consensus 70 e~~~l~~~Ha~eLee 84 (216) +++.-.+.|+.|.+. T Consensus 6 KL~~FLkDFD~eV~~ 20 (62) T 2qfa_B 6 KLASFLKDFDREVEI 20 (62) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999998899999 No 5 >>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltransferase, transferase; 2.30A {Burkholderia pseudomallei 1710B} (A:125-195) Probab=17.91 E-value=58 Score=12.89 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=25.8 Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 8761888488899999998458750005640589 Q gi|254780530|r 148 DCGKIVIHGPKNLHSLIEECLGEYSSAVCYENAD 181 (216) Q Consensus 148 ~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad 181 (216) .-..++|+||.+-++.+.+.|......++....+ T Consensus 35 sp~~~VIsG~~~ai~~~~~~l~~~gi~~~~L~v~ 68 (71) T 3g87_A 35 TPSQLVISGPAHEIARAEALFQHDRVRYLRLNTS 68 (71) T ss_dssp ETTEEEEEEEHHHHHHHGGGSCSSSCEEEECSCS T ss_pred CHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCC T ss_conf 6566322431134678887565338478751565 No 6 >>1nm2_A Malonyl COA:acyl carrier protein malonyltransferase; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor A3} (A:135-201) Probab=17.04 E-value=61 Score=12.75 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=26.2 Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 8761888488899999998458750005640589 Q gi|254780530|r 148 DCGKIVIHGPKNLHSLIEECLGEYSSAVCYENAD 181 (216) Q Consensus 148 ~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad 181 (216) .-..++|+||.+-++.+.+.|-.+...++.-+.+ T Consensus 31 sp~~~visG~~~~i~~~~~~l~~~gi~~~~L~v~ 64 (67) T 1nm2_A 31 GAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVA 64 (67) T ss_dssp ETTEEEEEEEHHHHHHHHHSCCTTEEEEEECSCS T ss_pred CCCCEEECCCHHHHHHHHHHHHHCCEEEEECCCC T ss_conf 9988892586999999987402216379983467 No 7 >>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, protein structure initiative, NESG; NMR {Escherichia coli O157} (A:) Probab=14.82 E-value=34 Score=14.38 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=16.4 Q ss_pred CCCCEEEEECCH-------HHHHHHHHHCCCCCCCEEEECCC Q ss_conf 687618884888-------99999998458750005640589 Q gi|254780530|r 147 GDCGKIVIHGPK-------NLHSLIEECLGEYSSAVCYENAD 181 (216) Q Consensus 147 g~~~~I~V~GP~-------~L~e~L~~~Lg~~~~~i~~~~ad 181 (216) +....|+|+.|+ .|++.|.+.|+-+.+.|...-.. T Consensus 35 ~~~l~v~v~app~~GkAN~~li~~Lak~l~v~ks~I~i~~G~ 76 (108) T 1n91_A 35 GDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGE 76 (108) T ss_dssp SSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCT T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHEEEEEECC T ss_conf 887999996699787078999999999959970008998637 No 8 >>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed Trp residue, thiocoraline, protein binding, peptide binding protein; 2.15A {Micromonospora SP} (A:1-61) Probab=13.83 E-value=73 Score=12.22 Aligned_cols=46 Identities=7% Similarity=-0.023 Sum_probs=32.8 Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCHH Q ss_conf 7618884888999999984587500056405898428999682002 Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLGEYSSAVCYENADTVEFSTKIFGSVI 194 (216) Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad~~Elsv~igetVi 194 (216) -|-|.+++++..++-+++.+|.....+--......--.+.+|+++| T Consensus 5 ~PyL~~~~~~~Ai~fy~~afGae~~~~~~~dg~v~HAeL~ig~~~i 50 (61) T 3itw_A 5 VVELAYTDPDRAVDWLVRVFGFRLLLRQPAIGTIRHADLDTGGGIV 50 (61) T ss_dssp EEEEEESCHHHHHHHHHHHHCCEEEEEESSSSSCSEEEEECSSSEE T ss_pred EEEEECCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCEEE T ss_conf 9999829999999999984698898770667648999998599999 No 9 >>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae} (A:) Probab=13.41 E-value=47 Score=13.51 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=37.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999899999999999877-9999999999999999950468 Q gi|254780530|r 101 VRDSFKCFSDSLECEVIRILKSVLDI-GLSRKAAIEFAAVVVDFLKKGD 148 (216) Q Consensus 101 i~e~~~~le~~Is~~vArIL~PvL~e-~l~~qAv~~la~~i~~~~~dg~ 148 (216) ...+...+...|+.-|..+|.|+=.+ .|.+.....+|..|...+...+ T Consensus 10 ~~k~~~~f~~~la~~V~~~L~~y~k~~kl~rEd~K~~aKkl~~~i~~ke 58 (104) T 2c5z_A 10 SQRLEHNWNKFFASFVPNLIKKNPQSKQFDHENIKQCAKDIVKILTTKE 58 (104) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 8889999999999983799987266501877899999999999998998 No 10 >>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:617-685,A:744-752) Probab=13.15 E-value=77 Score=12.09 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=26.5 Q ss_pred CCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 468761888488899999998458750005640589 Q gi|254780530|r 146 KGDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENAD 181 (216) Q Consensus 146 dg~~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~~~ad 181 (216) .+.-..++|+||.+=++.+.+.|..+...++....+ T Consensus 29 ~Nsp~q~VisG~~~~i~~l~~~l~~~gi~~~~L~v~ 64 (78) T 3hhd_A 29 HNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTG 64 (78) T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHTTCCEEEECCS T ss_pred ECCCCEEEEECCHHHHHHHHHHHHHCCEEEEECCCC T ss_conf 648986999897899999998888669069989988 Done!