Query gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs 32 out of 34
Neff 4.3
Searched_HMMs 13730
Date Wed Jun 1 09:49:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oi7a2 c.23.4.1 (A:122-288) S 23.8 7.3 0.00053 16.3 -0.2 21 149-169 147-167 (167)
2 d2nrka1 d.218.1.14 (A:4-170) H 23.1 7.4 0.00054 16.2 -0.2 28 17-44 23-50 (167)
3 d1vl1a_ c.124.1.1 (A:) 6-phosp 18.5 23 0.0017 13.0 3.6 42 125-166 8-52 (218)
4 d2nu7a2 c.23.4.1 (A:122-287) S 13.2 31 0.0023 12.1 1.7 20 149-168 147-166 (166)
5 d1xzpa3 d.250.1.2 (A:1-117) Tr 9.8 40 0.0029 11.4 1.2 22 146-168 13-34 (117)
6 d1nm2a2 d.58.23.1 (A:134-195) 9.4 41 0.003 11.3 2.8 28 143-170 26-53 (62)
7 d1euca2 c.23.4.1 (A:131-306) S 9.4 32 0.0023 12.0 0.1 21 149-169 151-171 (176)
8 d2pc6a2 d.58.18.6 (A:1-77) Ace 9.2 42 0.0031 11.2 1.9 29 149-177 45-73 (77)
9 d2py8a1 a.280.1.1 (A:2-121) Ru 9.0 43 0.0031 11.2 5.3 47 2-58 33-83 (120)
10 d1zeea1 a.266.1.2 (A:6-392) Hy 8.4 29 0.0021 12.3 -0.5 17 1-17 265-281 (387)
No 1
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.78 E-value=7.3 Score=16.25 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.8
Q ss_pred CCEEEEECCHHHHHHHHHHCC
Q ss_conf 761888488899999998458
Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLG 169 (216)
Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg 169 (216)
.+-+++.-|+.|++.|++.||
T Consensus 147 aGv~~v~~~~El~d~lk~~lg 167 (167)
T d1oi7a2 147 AGIPVADTIDEIVELVKKALG 167 (167)
T ss_dssp HTCCBCSSHHHHHHHHHHHHC
T ss_pred CCCEECCCHHHHHHHHHHHHC
T ss_conf 799783999999999999639
No 2
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=23.13 E-value=7.4 Score=16.21 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=13.2
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCH
Q ss_conf 0383323425542012443644423335
Q gi|254780530|r 17 SLSDKIVLSETIISNSTADVTFSSIADF 44 (216)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~iDv 44 (216)
.|++.++--+-|+|-+-|.+.+-|+||+
T Consensus 23 ~l~~~~~~IeHIGSTsVpGl~AKpiIDI 50 (167)
T d2nrka1 23 ILKENCLKVEHIGSTSVPNLAAKPIIDF 50 (167)
T ss_dssp HHGGGEEEEEEESGGGSTTCCBCSCEEE
T ss_pred HCCCCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf 6275211566624477898856872478
No 3
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Probab=18.52 E-value=23 Score=12.98 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHH
Q ss_conf 77999999999999999995046876188848---8899999998
Q gi|254780530|r 125 DIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEE 166 (216)
Q Consensus 125 ~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~ 166 (216)
.+.+...+++.++..++..+...+.-.|.++| |..+++.|.+
T Consensus 8 ~~~~~~~~a~~i~~~~~~~~~~~~~~~i~lsGG~tp~~~y~~L~~ 52 (218)
T d1vl1a_ 8 EDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAE 52 (218)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 789999999999999999998589989997898059999999983
No 4
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.17 E-value=31 Score=12.09 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=11.5
Q ss_pred CCEEEEECCHHHHHHHHHHC
Q ss_conf 76188848889999999845
Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECL 168 (216)
Q Consensus 149 ~~~I~V~GP~~L~e~L~~~L 168 (216)
.+-|+|+-+++|++.+++-|
T Consensus 147 aGvi~v~~~~el~~~l~~vl 166 (166)
T d2nu7a2 147 AGVKTVRSLADIGEALKTVL 166 (166)
T ss_dssp TTCEECSSGGGHHHHHHHHC
T ss_pred CCCEEECCHHHHHHHHHHHC
T ss_conf 89469199999999999869
No 5
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.82 E-value=40 Score=11.38 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=14.1
Q ss_pred CCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 46876188848889999999845
Q gi|254780530|r 146 KGDCGKIVIHGPKNLHSLIEECL 168 (216)
Q Consensus 146 dg~~~~I~V~GP~~L~e~L~~~L 168 (216)
.+.-.-||||||..+ +.+++.+
T Consensus 13 ~saIaVIRiSG~~a~-~i~~~~~ 34 (117)
T d1xzpa3 13 KGAIAILRLSGPDSW-KIVQKHL 34 (117)
T ss_dssp SCSCEEEEEESSSHH-HHHHTTE
T ss_pred CCEEEEEEEECCCHH-HHHHHHH
T ss_conf 656999999995178-9999983
No 6
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]}
Probab=9.44 E-value=41 Score=11.29 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=21.9
Q ss_pred HHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 9504687618884888999999984587
Q gi|254780530|r 143 FLKKGDCGKIVIHGPKNLHSLIEECLGE 170 (216)
Q Consensus 143 ~~~dg~~~~I~V~GP~~L~e~L~~~Lg~ 170 (216)
..-.+.-..++|+||.+=++.+.+.+..
T Consensus 26 iAn~Nsp~q~VisG~~~av~~~~~~~~~ 53 (62)
T d1nm2a2 26 PANVNGAGQIVAAGTMEQLAALNEDKPE 53 (62)
T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHSCCT
T ss_pred EEEECCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 8563799969998789999999976883
No 7
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=9.43 E-value=32 Score=12.02 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=10.2
Q ss_pred CCEEEEECCHHHHHHHHHHCC
Q ss_conf 761888488899999998458
Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLG 169 (216)
Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg 169 (216)
.+-|+|+-|.+|.+.|++.+.
T Consensus 151 aGvi~v~s~~El~~~l~~~~~ 171 (176)
T d1euca2 151 AGVVVSMSPAQLGTTIYKEFE 171 (176)
T ss_dssp TTCEECSSGGGHHHHHHHHHH
T ss_pred CCCEECCCHHHHHHHHHHHHH
T ss_conf 898692999999999999998
No 8
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=9.22 E-value=42 Score=11.24 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=21.4
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 76188848889999999845875000564
Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLGEYSSAVCY 177 (216)
Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~ 177 (216)
+..|++.|++.-++++.++|-..-.-++.
T Consensus 45 Rmtivv~~~~~~i~qi~kQL~KlvdVi~V 73 (77)
T d2pc6a2 45 RMTLVTNGPDEIVEQITKQLNKLIEVVKL 73 (77)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999977888999999998578687999
No 9
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=8.95 E-value=43 Score=11.17 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHH----HHHHHHHHHH
Q ss_conf 76899998630210003833234255420124436444233357899----9999999999
Q gi|254780530|r 2 SDAVLSRLEDFSRLGSLSDKIVLSETIISNSTADVTFSSIADFQKEQ----DKAYQEGYNK 58 (216)
Q Consensus 2 s~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDveaer----~eAya~G~a~ 58 (216)
.+....+|.||+.-..++|| |.++..-+.+- + ++ |+| |+.|++..-+
T Consensus 33 np~~~~wL~~f~~~~~~~DG----d~fl~~L~~e~---~--~l-AlRIm~vRe~lAeev~d 83 (120)
T d2py8a1 33 NPPQAIWLNQYLASHSIQNG----ETFLTELLDEN---K--EL-VLRILAVREDIAESVLD 83 (120)
T ss_dssp CHHHHHHHHHHHHHSCCSSH----HHHHHHHHTTC---H--HH-HHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHCCCCCCH----HHHHHHHHHHC---H--HH-HHHHHHHHHHHHHHHHH
T ss_conf 92889999998716999878----99999998669---9--99-99999999999999997
No 10
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=8.38 E-value=29 Score=12.30 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHCCHHC
Q ss_conf 97689999863021000
Q gi|254780530|r 1 MSDAVLSRLEDFSRLGS 17 (216)
Q Consensus 1 ms~~~~~~l~df~~~~~ 17 (216)
|-|.--.+|.||.+-+|
T Consensus 265 MPP~hra~L~d~~r~PS 281 (387)
T d1zeea1 265 MMPEDQQILRECMRRPN 281 (387)
T ss_dssp SCHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHCCCH
T ss_conf 79789999999863871
Done!