RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:174-225,A:356-397) Length = 94 Score = 27.5 bits (61), Expect = 1.3 Identities = 5/23 (21%), Positives = 11/23 (47%) Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147 +IGL+ A++ V + + Sbjct: 27 EIGLNSPEAVQGMNEVQKWFTEA 49 >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} (A:158-205,A:334-371) Length = 86 Score = 26.9 bits (60), Expect = 2.2 Identities = 6/23 (26%), Positives = 10/23 (43%) Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147 D+G+ A +VD +K Sbjct: 23 DVGVDNAGAKAGLTFLVDLIKNK 45 >2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A* (A:155-206,A:337-382) Length = 98 Score = 26.6 bits (59), Expect = 2.9 Identities = 7/23 (30%), Positives = 14/23 (60%) Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147 DIGL+ + AI+ ++ + +G Sbjct: 27 DIGLANEGAIKGVKLLKRLVDEG 49 >1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} (A:178-228,A:356-402) Length = 98 Score = 25.8 bits (57), Expect = 4.3 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147 +IGL A++ ++ D + K Sbjct: 27 NIGLDTPGAVQAYTLMRDMVSKY 49 >1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:104-272,A:533-571) Length = 208 Score = 25.4 bits (56), Expect = 5.6 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Query: 83 ADLRELFESSTS--KAIAIAVR-DSF 105 AD LFESS K AVR D+F Sbjct: 142 ADPDRLFESSGCAGKLAVFAVRLDTF 167 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 25.6 bits (56), Expect = 6.0 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 74 IQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVL 124 I+ +NE+ L+ E S+ + + + + E L++ Sbjct: 40 IKDWVENELEALKLEAEEIPSEDQNEFLLER----TREIHNEAESQLRAAQ 86 >1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (C:1-324) Length = 324 Score = 24.8 bits (54), Expect = 9.7 Identities = 6/29 (20%), Positives = 12/29 (41%) Query: 167 CLGEYSSAVCYENADTVEFSTKIFGSVIK 195 + S + +ENA +T +I+ Sbjct: 86 KRAQVSPVLNFENARLAGEATWYAAEIIE 114 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.131 0.363 Gapped Lambda K H 0.267 0.0714 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,497,261 Number of extensions: 62526 Number of successful extensions: 176 Number of sequences better than 10.0: 1 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 10 Length of query: 216 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 131 Effective length of database: 2,082,624 Effective search space: 272823744 Effective search space used: 272823744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.2 bits)