RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780530|ref|YP_003064943.1| hypothetical protein
CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>2zyo_A Solute-binding protein; open form, sugar binding protein;
           HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB:
           2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:174-225,A:356-397)
          Length = 94

 Score = 27.5 bits (61), Expect = 1.3
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147
           +IGL+   A++    V  +  + 
Sbjct: 27  EIGLNSPEAVQGMNEVQKWFTEA 49


>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP
           RACK1A, receptor for activiated protein C-kinase 1,
           beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
           coli} (A:158-205,A:334-371)
          Length = 86

 Score = 26.9 bits (60), Expect = 2.2
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147
           D+G+    A      +VD +K  
Sbjct: 23  DVGVDNAGAKAGLTFLVDLIKNK 45


>2gha_A Maltose ABC transporter, periplasmic maltose- binding
           protein; periplasmic binding protein, MBP, maltotriose,
           sugar binding protein; HET: MLR; 1.60A {Thermotoga
           maritima MSB8} PDB: 2ghb_A 2fnc_A* (A:155-206,A:337-382)
          Length = 98

 Score = 26.6 bits (59), Expect = 2.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147
           DIGL+ + AI+   ++   + +G
Sbjct: 27  DIGLANEGAIKGVKLLKRLVDEG 49


>1urs_A Maltose-binding protein; maltodextrin-binding protein,
           acidophIle, thermoacidophIle, hyperthermophIle,
           thermophIle; HET: MLR; 1.45A {Alicyclobacillus
           acidocaldarius} (A:178-228,A:356-402)
          Length = 98

 Score = 25.8 bits (57), Expect = 4.3
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 125 DIGLSRKAAIEFAAVVVDFLKKG 147
           +IGL    A++   ++ D + K 
Sbjct: 27  NIGLDTPGAVQAYTLMRDMVSKY 49


>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD;
           1.90A {Escherichia coli} (A:104-272,A:533-571)
          Length = 208

 Score = 25.4 bits (56), Expect = 5.6
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 83  ADLRELFESSTS--KAIAIAVR-DSF 105
           AD   LFESS    K    AVR D+F
Sbjct: 142 ADPDRLFESSGCAGKLAVFAVRLDTF 167


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 25.6 bits (56), Expect = 6.0
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 74  IQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVL 124
           I+   +NE+  L+   E   S+     + +     +  +  E    L++  
Sbjct: 40  IKDWVENELEALKLEAEEIPSEDQNEFLLER----TREIHNEAESQLRAAQ 86


>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron
           transfer, oxidoreductase, acetyl-COA formation,
           WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica}
           (C:1-324)
          Length = 324

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 167 CLGEYSSAVCYENADTVEFSTKIFGSVIK 195
              + S  + +ENA     +T     +I+
Sbjct: 86  KRAQVSPVLNFENARLAGEATWYAAEIIE 114


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,497,261
Number of extensions: 62526
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 10
Length of query: 216
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 131
Effective length of database: 2,082,624
Effective search space: 272823744
Effective search space used: 272823744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)