RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780530|ref|YP_003064943.1| hypothetical protein
CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 86/243 (35%)

Query: 24  LSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSK------NDF---- 73
           L   +I  S    T S +     + +K + +G N  I +    W          D+    
Sbjct: 183 LVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLN--ILE----WLENPSNTPDKDYLLSI 234

Query: 74  ---------IQRSH--------DNEIADLRELFESST--SK----AIAIAVRDSFKCFSD 110
                    IQ +H             +LR   + +T  S+    A+AIA  DS++ F  
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294

Query: 111 -SLECEVIRILKSVLDIGL-SRKAA----IEFAAVVVDFLKKGDCGK----IVIHGP--K 158
              +   I +L     IG+   +A     +   +++ D L+    G     + I     +
Sbjct: 295 SVRKA--ITVL---FFIGVRCYEAYPNTSLP-PSILEDSLENN-EGVPSPMLSISNLTQE 347

Query: 159 NLHSLIEECLGEYSSAVCYENADTVEFSTKIFGSVIKTR--------------LESWLSD 204
            +   + +            N+       ++  S++                 L   L  
Sbjct: 348 QVQDYVNKT-----------NSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395

Query: 205 VKA 207
            KA
Sbjct: 396 AKA 398



 Score = 33.8 bits (77), Expect = 0.029
 Identities = 29/221 (13%), Positives = 55/221 (24%), Gaps = 88/221 (39%)

Query: 5   VLSRLEDFSRLGSLSD--KIVLSE---TIISNSTADV-----TFSSIADFQKEQDKAYQE 54
           V S +E  S++G       + L+E     +  +  D+           D    + K   +
Sbjct: 68  VSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKELIK 124

Query: 55  GYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAI-AVRDSF-------K 106
            Y  A                +  ++       LF +       + A+   F        
Sbjct: 125 NYITARI-------MAKRPFDKKSNSA------LFRAVGEGNAQLVAI---FGGQGNTDD 168

Query: 107 CFSDSLECEVIRILKSVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEE 166
            F +         L+ +            +  +V D +                     E
Sbjct: 169 YFEE---------LRDLYQT---------YHVLVGDLI-----------------KFSAE 193

Query: 167 CLGEYSSAVCYENADTVEFSTKIFGSVIKTR---LESWLSD 204
            L E             E   K+F     T+   +  WL +
Sbjct: 194 TLSELIR-----TTLDAE---KVF-----TQGLNILEWLEN 221



 Score = 33.0 bits (75), Expect = 0.055
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 19/154 (12%)

Query: 28   IISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIA-DLR 86
            I  N +A + F +I D + + +K ++E  N+  H     ++S+   +  +   + A  L 
Sbjct: 1684 IRENYSA-MIFETIVDGKLKTEKIFKE-INE--HSTSYTFRSEKGLLSATQFTQPALTLM 1739

Query: 87   E--LFESSTSKAIAIAVRDSFKCFS-------DSLECEVIRILKSVLDIGLSRKAAIEFA 137
            E   FE   SK + I    +F   S        SL  +V+ I +S++++   R   ++  
Sbjct: 1740 EKAAFEDLKSKGL-IPADATFAGHSLGEYAALASL-ADVMSI-ESLVEVVFYRGMTMQ-V 1795

Query: 138  AVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEY 171
            AV  D L + + G I I+  +   S  +E L +Y
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEAL-QY 1828


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.1 bits (69), Expect = 0.18
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 40  SIADFQKEQDKAYQEGYNKAIHDRELYW--KSKND---FIQRSHD--------NEIADLR 86
           SI  +++EQ K  QE  + A    E  W  K+K D   + QR  +        N IAD +
Sbjct: 86  SIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-K 143

Query: 87  ELFESSTSKAI 97
             ++   +  I
Sbjct: 144 AFYQQPDADII 154


>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
          thioester-forming, ligase; HET: COA PRX; 1.75A
          {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
          2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
          Length = 652

 Score = 27.7 bits (61), Expect = 2.4
 Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 24 LSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFI 74
          +S+T      A++    + + ++     Y+  Y ++I+D + +W  +   +
Sbjct: 1  MSQTHKHAIPANIADRCLINPEQ-----YETKYKQSINDPDTFWGEQGKIL 46


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 83 ADLRELFESSTSKAIAI 99
          A L+ L+   ++ A+AI
Sbjct: 27 ASLK-LYADDSAPALAI 42


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,728,220
Number of extensions: 75410
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 9
Length of query: 216
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 127
Effective length of database: 3,535,514
Effective search space: 449010278
Effective search space used: 449010278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)