RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.2 bits (117), Expect = 7e-07 Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 86/243 (35%) Query: 24 LSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSK------NDF---- 73 L +I S T S + + +K + +G N I + W D+ Sbjct: 183 LVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLN--ILE----WLENPSNTPDKDYLLSI 234 Query: 74 ---------IQRSH--------DNEIADLRELFESST--SK----AIAIAVRDSFKCFSD 110 IQ +H +LR + +T S+ A+AIA DS++ F Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294 Query: 111 -SLECEVIRILKSVLDIGL-SRKAA----IEFAAVVVDFLKKGDCGK----IVIHGP--K 158 + I +L IG+ +A + +++ D L+ G + I + Sbjct: 295 SVRKA--ITVL---FFIGVRCYEAYPNTSLP-PSILEDSLENN-EGVPSPMLSISNLTQE 347 Query: 159 NLHSLIEECLGEYSSAVCYENADTVEFSTKIFGSVIKTR--------------LESWLSD 204 + + + N+ ++ S++ L L Sbjct: 348 QVQDYVNKT-----------NSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395 Query: 205 VKA 207 KA Sbjct: 396 AKA 398 Score = 33.8 bits (77), Expect = 0.029 Identities = 29/221 (13%), Positives = 55/221 (24%), Gaps = 88/221 (39%) Query: 5 VLSRLEDFSRLGSLSD--KIVLSE---TIISNSTADV-----TFSSIADFQKEQDKAYQE 54 V S +E S++G + L+E + + D+ D + K + Sbjct: 68 VSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKELIK 124 Query: 55 GYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAI-AVRDSF-------K 106 Y A + ++ LF + + A+ F Sbjct: 125 NYITARI-------MAKRPFDKKSNSA------LFRAVGEGNAQLVAI---FGGQGNTDD 168 Query: 107 CFSDSLECEVIRILKSVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEE 166 F + L+ + + +V D + E Sbjct: 169 YFEE---------LRDLYQT---------YHVLVGDLI-----------------KFSAE 193 Query: 167 CLGEYSSAVCYENADTVEFSTKIFGSVIKTR---LESWLSD 204 L E E K+F T+ + WL + Sbjct: 194 TLSELIR-----TTLDAE---KVF-----TQGLNILEWLEN 221 Score = 33.0 bits (75), Expect = 0.055 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 19/154 (12%) Query: 28 IISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIA-DLR 86 I N +A + F +I D + + +K ++E N+ H ++S+ + + + A L Sbjct: 1684 IRENYSA-MIFETIVDGKLKTEKIFKE-INE--HSTSYTFRSEKGLLSATQFTQPALTLM 1739 Query: 87 E--LFESSTSKAIAIAVRDSFKCFS-------DSLECEVIRILKSVLDIGLSRKAAIEFA 137 E FE SK + I +F S SL +V+ I +S++++ R ++ Sbjct: 1740 EKAAFEDLKSKGL-IPADATFAGHSLGEYAALASL-ADVMSI-ESLVEVVFYRGMTMQ-V 1795 Query: 138 AVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEY 171 AV D L + + G I I+ + S +E L +Y Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEAL-QY 1828 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.1 bits (69), Expect = 0.18 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%) Query: 40 SIADFQKEQDKAYQEGYNKAIHDRELYW--KSKND---FIQRSHD--------NEIADLR 86 SI +++EQ K QE + A E W K+K D + QR + N IAD + Sbjct: 86 SIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-K 143 Query: 87 ELFESSTSKAI 97 ++ + I Sbjct: 144 AFYQQPDADII 154 >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 Score = 27.7 bits (61), Expect = 2.4 Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Query: 24 LSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAIHDRELYWKSKNDFI 74 +S+T A++ + + ++ Y+ Y ++I+D + +W + + Sbjct: 1 MSQTHKHAIPANIADRCLINPEQ-----YETKYKQSINDPDTFWGEQGKIL 46 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.3 bits (59), Expect = 2.6 Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 1/17 (5%) Query: 83 ADLRELFESSTSKAIAI 99 A L+ L+ ++ A+AI Sbjct: 27 ASLK-LYADDSAPALAI 42 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.131 0.363 Gapped Lambda K H 0.267 0.0495 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,728,220 Number of extensions: 75410 Number of successful extensions: 218 Number of sequences better than 10.0: 1 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 9 Length of query: 216 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 127 Effective length of database: 3,535,514 Effective search space: 449010278 Effective search space used: 449010278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.5 bits)