BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780530|ref|YP_003064943.1| hypothetical protein
CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
(216 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 216
Score = 433 bits (1114), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MSDAVLSRLEDFSRLGSLSDKIVLSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAI 60
MSDAVLSRLEDFSRLGSLSDKIVLSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAI
Sbjct: 1 MSDAVLSRLEDFSRLGSLSDKIVLSETIISNSTADVTFSSIADFQKEQDKAYQEGYNKAI 60
Query: 61 HDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRIL 120
HDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRIL
Sbjct: 61 HDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRIL 120
Query: 121 KSVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENA 180
KSVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENA
Sbjct: 121 KSVLDIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGEYSSAVCYENA 180
Query: 181 DTVEFSTKIFGSVIKTRLESWLSDVKAKIVSQQVSK 216
DTVEFSTKIFGSVIKTRLESWLSDVKAKIVSQQVSK
Sbjct: 181 DTVEFSTKIFGSVIKTRLESWLSDVKAKIVSQQVSK 216
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 23.1 bits (48), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 8 RLEDFSRLGSLSDKIVLSETIISNSTADVTFSS 40
RLE+F LG+ D+I E I+S V F+
Sbjct: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
>gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 351
Score = 21.9 bits (45), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 39/177 (22%)
Query: 63 RELYWKSKNDFIQRSHDNEIADLRELFESSTS--KAIAIAVRDSFKCFSDSLECEVIR-- 118
R Y+KS +D + N + L+ + K ++++ R SF L ++++
Sbjct: 147 RLGYYKSWSDEV-----NPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKD 201
Query: 119 ILKSVLDIGLSRKAAI-EFAAVVVDFLKKG--------------------DCGKIVIHGP 157
LK VL IG AI + + V G DCG + G
Sbjct: 202 GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGD 261
Query: 158 KNLHSLIEECLGEYSSAVCYE----NADTVEFSTKIFGSVIKTRLESWLSDVKAKIV 210
+S ++ +YS Y+ + T+ + FG + KT + W + + AK +
Sbjct: 262 ---NSYYDKS--KYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYM 313
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,142
Number of Sequences: 1233
Number of extensions: 4715
Number of successful extensions: 19
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 328,796
effective HSP length: 70
effective length of query: 146
effective length of database: 242,486
effective search space: 35402956
effective search space used: 35402956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)