HHsearch alignment for GI: 254780531 and conserved domain: COG1256

>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].
Probab=95.75  E-value=0.12  Score=27.69  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999878999999999999999999997306222025899999999999999999999999972068898752
Q gi|254780531|r  371 QIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       371 a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
T Consensus       472 ~~d~y~~l~~~i~~~~~~a~~~~~~~~~~l~~~~~~~~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln~~  551 (552)
T COG1256         472 FSDYYAGLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIV  551 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999988899999888741121479999999999986013778779999999999999999999999999999998642


Q ss_pred             C
Q ss_conf             5
Q gi|254780531|r  451 R  451 (452)
Q Consensus       451 ~  451 (452)
T Consensus       552 ~  552 (552)
T COG1256         552 G  552 (552)
T ss_pred             C
T ss_conf             9