HHsearch alignment for GI: 254780531 and conserved domain: COG1256
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].
Probab=95.75 E-value=0.12 Score=27.69 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999878999999999999999999997306222025899999999999999999999999972068898752
Q gi|254780531|r 371 QIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF 450 (452)
Q Consensus 371 a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~ 450 (452)
T Consensus 472 ~~d~y~~l~~~i~~~~~~a~~~~~~~~~~l~~~~~~~~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln~~ 551 (552)
T COG1256 472 FSDYYAGLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIV 551 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999988899999888741121479999999999986013778779999999999999999999999999999998642
Q ss_pred C
Q ss_conf 5
Q gi|254780531|r 451 R 451 (452)
Q Consensus 451 ~ 451 (452)
T Consensus 552 ~ 552 (552)
T COG1256 552 G 552 (552)
T ss_pred C
T ss_conf 9