HHsearch alignment for GI: 254780531 and conserved domain: PRK06008
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=8.5e-34 Score=224.24 Aligned_cols=343 Identities=14% Similarity=0.149 Sum_probs=225.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
T Consensus 4 ~~Ist~~~~~~lr~~~~~~q~~l~~~~~E~sTG~~ad~~~~lg~~~~~~~~l~~~~~~~~~~~~~~~~~~~rl~~~q~aL 83 (348)
T PRK06008 4 SFISTYALQNALRLTIAKLQAELVKAQTEATTGRYADVGLSLGSKTGRSVSLRREYDRLASLTDSNSLVTQRLTATQTAL 83 (348)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00128999999999999999999999998713710565431126689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999987530377630356788999999999998630012110013566654322334332221112333332
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKV 161 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (452)
T Consensus 84 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~lv~~lN-t~~~G~yLFaG~~tdt~P~~d~~~~~s~~~~~---~ 159 (348)
T PRK06008 84 GQLIDAAQSFLNDLLAANASAETGSVVAQSARSALSSLTSTLN-TSVNGEYLFAGINTDVKPLTDYTAPGSAAKTA---V 159 (348)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHH---H
T ss_conf 9999999999999982468886088999999999999999872-65388522268678988753345676520244---7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222222135433333221111111112233322345443322211112222112222222221111111111110100
Q gi|254780531|r 162 QITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQ 241 (452)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (452)
T Consensus 160 ----------------d~~~--~~~~~~~~~~--~~~a~it~~~~~~-~------~~~--------------~~~~~f~~ 198 (348)
T PRK06008 160 ----------------DTAF--QTFFGFAQDD--PAVSNITAAQMQT-F------LDG--------------TFAPLFND 198 (348)
T ss_pred ----------------HHHH--HHHHCCCCCC--CCHHHCCHHHHHH-H------CCC--------------CCCCCCCC
T ss_conf ----------------7777--6540367776--2043200566643-3------046--------------42113467
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222101233334433222223322222100000122344443211001233211100000000111111112234444
Q gi|254780531|r 242 AKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTE 321 (452)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (452)
T Consensus 199 ~---~~~~~~s~as~~~-------------------~~~~I~~~~~-------------------v~~----------s~ 227 (348)
T PRK06008 199 A---NWSANWSSASDTN-------------------ITSRISPTET-------------------AET----------ST 227 (348)
T ss_pred C---CCCCCCCCCCCCC-------------------CCEECCCCCE-------------------EEC----------CC
T ss_conf 6---3011435577765-------------------2101378863-------------------303----------66
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33223222333222221000001223344432100000057899999999999999999987899999999999999999
Q gi|254780531|r 322 STTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRD 401 (452)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~ 401 (452)
T Consensus 228 ~An~~~~r------~~~~~~~~~a~~~~~~l~~~a~~~~~~~a~~~l~~a~~~l~~~ra~lG~~q~rie~a~~r~~~~~~ 301 (348)
T PRK06008 228 SANAEGFR------KLAMAYVMVSELGDIGLSSEAQQTVTDKAITLTGQAITGLTTQQATLGLAQSRVKKANTRLDAQIK 301 (348)
T ss_pred CCCCHHHH------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78868899------999999998502578898678999999999999999999999999865999999999998999999
Q ss_pred HHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99973062220258999999999999999999999999720688987525
Q gi|254780531|r 402 AVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 402 ~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 302 ~l~~~~s~le~vD~~Ea~t~l~~~q~qLeasy~~tarl~~-----LSL~n 346 (348)
T PRK06008 302 LLKGQILDLEGVDPYEASTRVNALQTQIETSYSLTSQLQQ-----LSLVN 346 (348)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHH
T ss_conf 9999987421768999999999999999999999999851-----32974