HHsearch alignment for GI: 254780531 and conserved domain: PRK06663
>PRK06663 flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=419.20 Aligned_cols=413 Identities=13% Similarity=0.138 Sum_probs=234.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG 80 (452)
Q Consensus 1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~ 80 (452)
T Consensus 2 ~~RIst~~~~~~~~~~l~~~~~~l~~~qeqlSSGkrI~~~SDDP~~~a~~~~l~~~~~~~~Qy~~N~~~a~s~l~~~e~~ 81 (420)
T PRK06663 2 INRISHPMQYNNLKFSLREQESKITKLLNQLQTGKRIRKLRDDPTGATHSIRLDSRLFKLNTYEKNIDTGRSRLQYAEGY 81 (420)
T ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71406399999999999999999999999874248658933599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999875303776---3035678899999999999863001211001356665432233433222111233
Q gi|254780531|r 81 MSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD 157 (452)
Q Consensus 81 l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~ 157 (452)
T Consensus 82 L~~~~~il~r~relavqaaNgt~s~~dR~aia~Ei~~l~~~l~~iaNt~~~~G~~lF~G~~~~~~pf~~~~~~~~~~~~~ 161 (420)
T PRK06663 82 LQSLGNILQRARELAVQGANGTYQGDDKKAIAKEIDELLEDLVAIANAKGADGYSLFSGTKIDREPFEPIESKIKGLQGD 161 (420)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999997426899867799999999999999999984055588464477137888764234443343332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33322222222213543333322111111111223332234544332221111222211222222222111111111111
Q gi|254780531|r 158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA 237 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (452)
T Consensus 162 ~~~~~~~~i~y~G~~~~~~~~i~~~~~~~~~~~g~~~f~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~ 230 (420)
T PRK06663 162 ELKNQIIGVEYNGNQGEQLTEIENGEYIPTNYPGNKVFWGQNQSITSSV-----D------NSGFVVKEDTKIYIDGVEI 230 (420)
T ss_pred CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEECCCCCCEECC-----C------CCCCEECCCCEEEECCEEE
T ss_conf 3355325678525543000440366156302575210222553300012-----5------6540331463366314267
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01001122210123333443322222332222210000012234444321100123321110000000011111111223
Q gi|254780531|r 238 TFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYY 317 (452)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (452)
T Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 288 (420)
T PRK06663 231 HLTAGDTADDIIAKINESSAPVKASLDPVLN-------SISISTTTPHQIWITDEEGSTVLRDLG--------------- 288 (420)
T ss_pred EECCCCCHHHHHHHHCCCCCCEEEEEECCCC-------CEEEECCCCCCEEEECCCCCCCEECCC---------------
T ss_conf 5115751888887514777522576302455-------413311565413552056641000123---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44443322322233322222100000122334443210000005789999999999999999998789999999999999
Q gi|254780531|r 318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIK 397 (452)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~ 397 (452)
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~ld~a~~~v~~~ra~iGar~nrle~~~~~~~ 368 (420)
T PRK06663 289 LLTQNTKEPPYNLSNSAEVRGRSIFDVLIQLRDALIQNDQELIGGRDLAELDEALENILRRLADLGAKENRLERSYERIS 368 (420)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22345567764434333335523888899887655324156566658999999999999999998799999999999888
Q ss_pred HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999973062220258999999999999999999999999720688987525
Q gi|254780531|r 398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 369 ~~~~~l~~~~S~i~DaD~a~~it~l~~~~~~~qAa~~~~a~i~~-----~SLfd 417 (420)
T PRK06663 369 KEIMDMTEDMSKYTDLDVTKAITNLKMLELAHQVSLGVSAKIMK-----TTLLD 417 (420)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_conf 89999999886330523999999999999999999999998706-----62887