HHsearch alignment for GI: 254780531 and conserved domain: PRK07192
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed.
Probab=100.00 E-value=0 Score=365.58 Aligned_cols=299 Identities=16% Similarity=0.198 Sum_probs=226.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 RIst~~~~~~~l~~l~~~~~~l~~~q~qlsSGkri~~~sDDp~~~~~~~~l~~~~~~~~q~~~N~~~a~~~l~~~d~aL~ 81 (305)
T PRK07192 2 RISTNQLYSTMLRSIQQSQAGLMKLQQQMSTGKRILTPSDDPIASVRLLELNREQANIKQYRSNIANLSNSLSAQEGHLS 81 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56569999999999999999999999998337853894238999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 ~~~~il~r~rel~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt~~~~G~ylF~G~~~~~~pf~~~~~~~~~~y~G~- 160 (305)
T PRK07192 82 GVNDQLQSVRDLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGRYLFSGTASNTQPITFDPAGGKYTYNGN- 160 (305)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCEEEEECC-
T ss_conf 9999999999999985068898267998888999989999999874142651353254356664133378870688448-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (452)
T Consensus 161 -------------------------------~~~~~~~i~~~-----------~~~~~~~~------------------- 179 (305)
T PRK07192 161 -------------------------------SDQRQVQVGEG-----------VQLPVNVT------------------- 179 (305)
T ss_pred -------------------------------CCCEEEEECCC-----------EEEEECCC-------------------
T ss_conf -------------------------------76447884167-----------04430453-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T Consensus 180 --g-~~--~-------------f~----~--------------~~~~~-f--------~~-----------l-------- 195 (305)
T PRK07192 180 --L-QS--V-------------FE----G--------------GGLDV-L--------NA-----------L-------- 195 (305)
T ss_pred --H-HH--H-------------HC----C--------------CCHHH-H--------HH-----------H--------
T ss_conf --8-88--7-------------52----5--------------73568-9--------99-----------9--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~ 399 (452)
T Consensus 196 ------------------~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~ld~a~~~v~~~~a~iGa~~nrle~~~~~~~~~ 256 (305)
T PRK07192 196 ------------------DKLIDDL-KTPTLPAGDPALTAAIDEALGAIDNALDNVLGTLTEVGSRQKELDLLQKNHEDM 256 (305)
T ss_pred ------------------HHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------9999874-166655543336999999999999999999999999859999999999889999
Q ss_pred HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999973062220258999999999999999999999999720688987525
Q gi|254780531|r 400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 257 ~~~l~~~~s~i~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~-----lSL~d 303 (305)
T PRK07192 257 KLQNAKILSDLQDLDYAEAYTDLSNQMAALEATQKTFVKVNS-----LSLFN 303 (305)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf 999999987754557999999999999999999999998816-----73873