HHsearch alignment for GI: 254780531 and conserved domain: PRK07701
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=365.09 Aligned_cols=294 Identities=15% Similarity=0.146 Sum_probs=222.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 RIst~~~~~~~~~~l~~~~~~l~~~~~qlsSGkri~~~sDDp~~~~~~~~l~~~~~~~~q~~~N~~~a~s~l~~~e~~L~ 81 (301)
T PRK07701 2 RVTQGMIANNSLRNINKSLEKLDKYQEQLSTGKKITKPSDDPVVAMKSLRYRTDLAQVEQYQRNASDAKNWLENTESALN 81 (301)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71649999999999999999999999987336852780108999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 ~~~~~l~r~rel~vqa~ngt~s~~dr~~ia~E~~~l~~~l~~~aN-t~~~G~ylF~G~~~~~~pf~~~~~~~~------- 153 (301)
T PRK07701 82 EATDILQRARELAVQAANGTNTEEDRQAIAQEIEQLKDQLIQIAN-TQVNGRYIFNGTNTDTPPVTENGDGTY------- 153 (301)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCEECCCCCCE-------
T ss_conf 999999999999998605999877799999999988999999970-551781320575567764011787614-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (452)
T Consensus 154 --~~~---~~-------------------~~~~~~~~~i~~g-----------~~~~~n~-------------------- 178 (301)
T PRK07701 154 --TFE---NS-------------------TDSSDVKIEISKG-----------VKINVNV-------------------- 178 (301)
T ss_pred --EEE---EC-------------------CCCCEEEEEECCC-----------CEEEECC--------------------
T ss_conf --566---31-------------------6763068884277-----------1577315--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T Consensus 179 -~g--------------------~--------~~f~~----~~~-~~--------------------------------- 191 (301)
T PRK07701 179 -DG--------------------N--------SAFGG----DSG-GG--------------------------------- 191 (301)
T ss_pred -CH--------------------H--------HHHCC----CCC-CC---------------------------------
T ss_conf -54--------------------8--------76424----355-53---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~ 399 (452)
T Consensus 192 ---------------~~i~~~-----l~~~~~~l~~~~~~~~~~~l~~id~a~~~v~~~ra~~Ga~~nrle~~~~~~~~~ 251 (301)
T PRK07701 192 ---------------QNLFEM-----LDNLENALESGTHTGVSNALGDIDQFINNVLAERAELGARSNRLELIENRLSDQ 251 (301)
T ss_pred ---------------HHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------049998-----999998742677889999999999999999999998618999999999889999
Q ss_pred HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999973062220258999999999999999999999999720688987525
Q gi|254780531|r 400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 252 ~~~l~~~~s~i~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q-----~SL~d 298 (301)
T PRK07701 252 EINATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQ-----PSLVD 298 (301)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHH
T ss_conf 999999988775545999999999999999999999998835-----60988