HHsearch alignment for GI: 254780531 and conserved domain: PRK08869
>PRK08869 flagellin; Reviewed.
Probab=100.00 E-value=0 Score=479.73 Aligned_cols=373 Identities=19% Similarity=0.251 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG 80 (452)
Q Consensus 1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~ 80 (452)
T Consensus 2 ~~~IntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~a 81 (377)
T PRK08869 2 AVNVNTNVSAMTAQRNLNGATSALNQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 81 (377)
T ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85782619999999999999999999999861106647820168999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999875303776---3035678899999999999863001211001356665432233433222111233
Q gi|254780531|r 81 MSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD 157 (452)
Q Consensus 81 l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~ 157 (452)
T Consensus 82 L~~i~~iL~RmrELavqaaNgt~s~~DR~ai~~Ei~~L~~ei~~ian~t~fnG~~Ll~G~~~~~~~q~g~~~g~~~~~~~ 161 (377)
T PRK08869 82 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECCCCCCCEEEEEE
T ss_conf 99999999999999997634655555799999999999999999998655488774247776602621467884599850
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33322222222213543333322111111111223332234544332221111222211222222222111111111111
Q gi|254780531|r 158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA 237 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (452)
T Consensus 162 ~~~----------~~~~~~~g----~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~--------- 201 (377)
T PRK08869 162 SNM----------RSDAKIMG----GASYVAEEGKDKDWTVSG-----------------DNSGLTLSFTD--------- 201 (377)
T ss_pred CCC----------CHHHHCCC----CEEEECCCCCCCCCEECC-----------------CCCCEEEEEEC---------
T ss_conf 432----------01121367----514522554455420014-----------------66532687403---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01001122210123333443322222332222210000012234444321100123321110000000011111111223
Q gi|254780531|r 238 TFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYY 317 (452)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (452)
T Consensus 202 ---~~~~~~~~~i~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 255 (377)
T PRK08869 202 ---KGGEAQSININAKAGDDIEELATYINGQ------TDAVGASVTEDGKLQLFAANSSATGD----------------- 255 (377)
T ss_pred ---CCCCCEEEEEECCCCCHHHHHHHHHCCC------CCCEEEEECCCCEEEEEECCCCCCCC-----------------
T ss_conf ---6665225787325551378888875155------54313564157516886125544443-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44443322322233322222100000122334443210000005789999999999999999998789999999999999
Q gi|254780531|r 318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIK 397 (452)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~ 397 (452)
T Consensus 256 -------~~~~~~~~~~~-----~~~~~~~~~~~~~d~tt~~~a~~ai~~iD~Ai~~v~~~ra~lGA~~NrLe~~~~~l~ 323 (377)
T PRK08869 256 -------LSFSGALAAEL-----GLGNKGPVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQ 323 (377)
T ss_pred -------CCCCCHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------00031022221-----124443111221001225339999999999999999999987289999999999999
Q ss_pred HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999973062220258999999999999999999999999720688987525
Q gi|254780531|r 398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 324 ~~~~n~~aa~S~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 377 (377)
T PRK08869 324 NISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 377 (377)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 999999987423351319999999999999999999999997317679998409