HHsearch alignment for GI: 254780531 and conserved domain: PRK08869

>PRK08869 flagellin; Reviewed.
Probab=100.00  E-value=0  Score=479.73  Aligned_cols=373  Identities=19%  Similarity=0.251  Sum_probs=240.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
T Consensus         2 ~~~IntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~a   81 (377)
T PRK08869          2 AVNVNTNVSAMTAQRNLNGATSALNQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA   81 (377)
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             85782619999999999999999999999861106647820168999999999999999999999899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999875303776---3035678899999999999863001211001356665432233433222111233
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD  157 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~  157 (452)
T Consensus        82 L~~i~~iL~RmrELavqaaNgt~s~~DR~ai~~Ei~~L~~ei~~ian~t~fnG~~Ll~G~~~~~~~q~g~~~g~~~~~~~  161 (377)
T PRK08869         82 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECCCCCCCEEEEEE
T ss_conf             99999999999999997634655555799999999999999999998655488774247776602621467884599850


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322222222213543333322111111111223332234544332221111222211222222222111111111111
Q gi|254780531|r  158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA  237 (452)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (452)
T Consensus       162 ~~~----------~~~~~~~g----~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~---------  201 (377)
T PRK08869        162 SNM----------RSDAKIMG----GASYVAEEGKDKDWTVSG-----------------DNSGLTLSFTD---------  201 (377)
T ss_pred             CCC----------CHHHHCCC----CEEEECCCCCCCCCEECC-----------------CCCCEEEEEEC---------
T ss_conf             432----------01121367----514522554455420014-----------------66532687403---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01001122210123333443322222332222210000012234444321100123321110000000011111111223
Q gi|254780531|r  238 TFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYY  317 (452)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (452)
T Consensus       202 ---~~~~~~~~~i~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  255 (377)
T PRK08869        202 ---KGGEAQSININAKAGDDIEELATYINGQ------TDAVGASVTEDGKLQLFAANSSATGD-----------------  255 (377)
T ss_pred             ---CCCCCEEEEEECCCCCHHHHHHHHHCCC------CCCEEEEECCCCEEEEEECCCCCCCC-----------------
T ss_conf             ---6665225787325551378888875155------54313564157516886125544443-----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44443322322233322222100000122334443210000005789999999999999999998789999999999999
Q gi|254780531|r  318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIK  397 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~  397 (452)
T Consensus       256 -------~~~~~~~~~~~-----~~~~~~~~~~~~~d~tt~~~a~~ai~~iD~Ai~~v~~~ra~lGA~~NrLe~~~~~l~  323 (377)
T PRK08869        256 -------LSFSGALAAEL-----GLGNKGPVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQ  323 (377)
T ss_pred             -------CCCCCHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------00031022221-----124443111221001225339999999999999999999987289999999999999


Q ss_pred             HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
T Consensus       324 ~~~~n~~aa~S~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq  377 (377)
T PRK08869        324 NISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ  377 (377)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf             999999987423351319999999999999999999999997317679998409