HHsearch alignment for GI: 254780531 and conserved domain: PRK08913
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=303.20 Aligned_cols=298 Identities=17% Similarity=0.165 Sum_probs=223.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG 80 (452)
Q Consensus 1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~ 80 (452)
T Consensus 2 ~MRist~~~~~~~l~~i~~~q~~l~~~q~qlsTGk~~~~~sddp~~~~~~l~l~~~~~~~~qy~~n~~~a~~~l~~~~~a 81 (302)
T PRK08913 2 IMRVATFANSSQMIAGALRTQQTMASLQIQESSGLKSESFAGLGASAQQAVNLQVSVTRAQSYIDAATLAQSKVEVMYSA 81 (302)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15754599999999999999999999999971487378866478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999875303776-303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 81 MSKAIDVMSTIKNKITAGVERG-TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 81 l~~~~~~l~r~relavqa~n~~-~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 L~~~~~~~~~~~~l~v~a~~~t~~~~~a~a~e~~~~~~~lv~~~N-t~~~GrYlFsGt~t~t~P~~~~~~---------~ 151 (302)
T PRK08913 82 VSQIADLVQQLRSSLSAASTGTSTDATSAASSAQQALTQMASLLN-TQYGGQYVFAGADTTTAPVDFSSF---------A 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCEEECCC---------C
T ss_conf 999999999999999861489855799999999999999999860-744986255170289887321576---------6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (452)
T Consensus 152 ~~~~~--------------------~---------------~~~~~~--~~~~g~~------------------------ 170 (302)
T PRK08913 152 SVAGD--------------------S---------------ASSADT--SYYVGDD------------------------ 170 (302)
T ss_pred CCCCC--------------------C---------------CCCCCC--EEEECCC------------------------
T ss_conf 55677--------------------7---------------765553--2773587------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T Consensus 171 ----~~~~~~i~~~------------~~~~~~~--------~a~--~~-------------------------------- 192 (302)
T PRK08913 171 ----ELTSVRVSAT------------QSVAYGV--------TAD--NS-------------------------------- 192 (302)
T ss_pred ----CEEEEEECCC------------CEEECCC--------CCC--CH--------------------------------
T ss_conf ----2578885587------------4032377--------888--47--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~ 399 (452)
T Consensus 193 ----------------~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~~a~lG~~~~rle~~~~~~~~~ 253 (302)
T PRK08913 193 ----------------AFEDVMRALM---LVANSSSLSSSTLSSALDLASTATDDLGDVQSRLSNAASRITAASSLQTEY 253 (302)
T ss_pred ----------------HHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------8999999999---764478754799999999999999999999999809999999999878999
Q ss_pred HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999973062220258999999999999999999999999720688987525
Q gi|254780531|r 400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 254 ~~~l~~~~s~ledvD~aea~t~l~~~~~~lqAs~~~~ari~q-----lSL~d 300 (302)
T PRK08913 254 KSFAETLLGDLTDVDVAAVTAQLSTYQAQLTASYSAISKMKS-----LNLAS 300 (302)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_conf 999999988635759999999999999999999999998605-----60862