HHsearch alignment for GI: 254780531 and conserved domain: PRK12803
>PRK12803 flagellin; Provisional.
Probab=100.00 E-value=0 Score=465.45 Aligned_cols=331 Identities=18% Similarity=0.187 Sum_probs=230.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 ~IntN~~a~~A~~~l~~~~~~l~~s~~rLSSG~RInsa~DDaAGlaIa~~l~sqi~~l~qa~rNa~daiS~lqtaegal~ 81 (335)
T PRK12803 2 IINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLN 81 (335)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67267999999999999999999999985100664774215889999999999999899998539889999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 ei~~iLqRmrELavqAaNgT~s~~dr~~i~~E~~qL~~eI~~Ia~~T~fNg~~ll~g~~~~~~~~~~~~~~~~~------ 155 (335)
T PRK12803 82 EVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQP------ 155 (335)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCC------
T ss_conf 99999999999999853678998999999999999999999999848368861446765332311176506542------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (452)
T Consensus 156 -------------~~~~~~------~~~~~~~~~~t----------~~~~~----g~~~~-------------------- 182 (335)
T PRK12803 156 -------------AKINTP------ASLSGSQASWT----------LRVHV----GANQD-------------------- 182 (335)
T ss_pred -------------CCCCCC------CCCCCCCCCEE----------EEEEE----CCCCC--------------------
T ss_conf -------------235652------21135555236----------89986----37776--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T Consensus 183 ------~~~~~~~~~~~--~~~~~~~~g--~~~~-------~~--~~~--------~~~~-~~~~~~~------------ 222 (335)
T PRK12803 183 ------EAIAVNIYAAN--VANLFSGEG--AQQA-------AP--VQE--------GAQQ-EGAQAAP------------ 222 (335)
T ss_pred ------CEEEEEEEECH--HHHHHCCCC--CHHH-------HH--HHC--------CCCC-CCCCCCC------------
T ss_conf ------33788532003--666541455--2011-------11--100--------1100-1100012------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~ 399 (452)
T Consensus 223 --~~~~--------~~~---------~~g~~~~~~i~t~~~A~~ai~~iD~Ai~~v~~~Ra~lGA~qNRLe~~~~nl~~~ 283 (335)
T PRK12803 223 --APAA--------APA---------QGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYA 283 (335)
T ss_pred --CCCC--------CCC---------CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --2000--------001---------356545430000865999999999999999999998708999999999899999
Q ss_pred HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999973062220258999999999999999999999999720688987525
Q gi|254780531|r 400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 284 ~~Nl~aa~SrI~DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~LLq 335 (335)
T PRK12803 284 IENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR 335 (335)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 9999997531563059999999999999999999999997617689998409