HHsearch alignment for GI: 254780531 and conserved domain: PRK12803

>PRK12803 flagellin; Provisional.
Probab=100.00  E-value=0  Score=465.45  Aligned_cols=331  Identities=18%  Similarity=0.187  Sum_probs=230.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
T Consensus         2 ~IntN~~a~~A~~~l~~~~~~l~~s~~rLSSG~RInsa~DDaAGlaIa~~l~sqi~~l~qa~rNa~daiS~lqtaegal~   81 (335)
T PRK12803          2 IINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLN   81 (335)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67267999999999999999999999985100664774215889999999999999899998539889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
T Consensus        82 ei~~iLqRmrELavqAaNgT~s~~dr~~i~~E~~qL~~eI~~Ia~~T~fNg~~ll~g~~~~~~~~~~~~~~~~~------  155 (335)
T PRK12803         82 EVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQP------  155 (335)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCC------
T ss_conf             99999999999999853678998999999999999999999999848368861446765332311176506542------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
T Consensus       156 -------------~~~~~~------~~~~~~~~~~t----------~~~~~----g~~~~--------------------  182 (335)
T PRK12803        156 -------------AKINTP------ASLSGSQASWT----------LRVHV----GANQD--------------------  182 (335)
T ss_pred             -------------CCCCCC------CCCCCCCCCEE----------EEEEE----CCCCC--------------------
T ss_conf             -------------235652------21135555236----------89986----37776--------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
T Consensus       183 ------~~~~~~~~~~~--~~~~~~~~g--~~~~-------~~--~~~--------~~~~-~~~~~~~------------  222 (335)
T PRK12803        183 ------EAIAVNIYAAN--VANLFSGEG--AQQA-------AP--VQE--------GAQQ-EGAQAAP------------  222 (335)
T ss_pred             ------CEEEEEEEECH--HHHHHCCCC--CHHH-------HH--HHC--------CCCC-CCCCCCC------------
T ss_conf             ------33788532003--666541455--2011-------11--100--------1100-1100012------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
T Consensus       223 --~~~~--------~~~---------~~g~~~~~~i~t~~~A~~ai~~iD~Ai~~v~~~Ra~lGA~qNRLe~~~~nl~~~  283 (335)
T PRK12803        223 --APAA--------APA---------QGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYA  283 (335)
T ss_pred             --CCCC--------CCC---------CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --2000--------001---------356545430000865999999999999999999998708999999999899999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
T Consensus       284 ~~Nl~aa~SrI~DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~LLq  335 (335)
T PRK12803        284 IENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR  335 (335)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999997531563059999999999999999999999997617689998409