HHsearch alignment for GI: 254780531 and conserved domain: PRK12806

>PRK12806 flagellin; Provisional.
Probab=100.00  E-value=0  Score=491.50  Aligned_cols=445  Identities=19%  Similarity=0.198  Sum_probs=246.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
T Consensus         3 l~IntN~~Al~a~~~L~~~~~~l~~s~erLSSG~rIN~AaDDaAGlaIs~~m~aqi~gl~qa~~N~~dgiSl~qtAegAL   82 (475)
T PRK12806          3 QVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAM   82 (475)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             18966599999999999999999999997430276256530378999999999999889999998998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN  158 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  158 (452)
T Consensus        83 ~ev~~iLqRmReLAvQAaNgTn~~~DR~aiq~Ei~qL~~eIdrIa~~T~fNg~~LLdGs~~~~~~qvG~~~~~~i~~~~-  161 (475)
T PRK12806         83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSI-  161 (475)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEEEECCCCCCCEEEECCCCCCEEEEEE-
T ss_conf             9999999999999998616888778899999999999999987865262688874136777721675378885689961-


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCC-----CCCC
Q ss_conf             332222222-2213543333322111111111223332234544332------221111222211222222-----2221
Q gi|254780531|r  159 GKVQITTID-YYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLK------DIDVSVYDASGTISTKKF-----KLAT  226 (452)
Q Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~  226 (452)
T Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (475)
T PRK12806        162 GSIKASSIGGIATATGTEVAGAA-ATDITIAIGGGAATSINSSANFTGALNGQDATSAY-AKAAAINDAGIGGLSVTAST  239 (475)
T ss_pred             CCCCCCCCCCEEEECCCEECCCC-CCEEEEEECCCCCEEECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEEEEC
T ss_conf             44311222550110231102443-20146750465311102333023102454301344-33211023454533565303


Q ss_pred             CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1111111----111101001122210123333443322222332222210000012234444321100123321110000
Q gi|254780531|r  227 TSGAWLK----AANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPG  302 (452)
Q Consensus       227 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (452)
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~i~~~~~  317 (475)
T PRK12806        240 SGTQAVGAIGGTAGDTYNLTINGVAIYTNLNVAT--ALTNSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTES  317 (475)
T ss_pred             CCCEEEEECCCCCCCCEEEEECCEEEEECCCCCC--CCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf             4421321023455652133312402441132000--23422688875212333414887136606898405641588503


Q ss_pred             CCCCCCC--CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             0000111--1111122344443------3223222333222221000001223344432100000057899999999999
Q gi|254780531|r  303 YTNSTVA--KVGNTHYYVDTES------TTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKC  374 (452)
Q Consensus       303 ~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~  374 (452)
T Consensus       318 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~g~~~idv~t~~~A~~Ai~~ID~AI~~  397 (475)
T PRK12806        318 GTGFTAGTDGLTVTGGAFDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNS  397 (475)
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             54200245431320454344113301111221010154010012223344444453334454377799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
T Consensus       398 V~~~Ra~lGA~qNRLe~~i~nL~~~~eN~~aA~SrI~DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~LL~  474 (475)
T PRK12806        398 VNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG  474 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999987089999999999999999999997546450229999999999999999999999996507689998608