HHsearch alignment for GI: 254780531 and conserved domain: PRK12806
>PRK12806 flagellin; Provisional.
Probab=100.00 E-value=0 Score=491.50 Aligned_cols=445 Identities=19% Similarity=0.198 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
T Consensus 3 l~IntN~~Al~a~~~L~~~~~~l~~s~erLSSG~rIN~AaDDaAGlaIs~~m~aqi~gl~qa~~N~~dgiSl~qtAegAL 82 (475)
T PRK12806 3 QVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAM 82 (475)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 18966599999999999999999999997430276256530378999999999999889999998998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
T Consensus 83 ~ev~~iLqRmReLAvQAaNgTn~~~DR~aiq~Ei~qL~~eIdrIa~~T~fNg~~LLdGs~~~~~~qvG~~~~~~i~~~~- 161 (475)
T PRK12806 83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSI- 161 (475)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEEEECCCCCCCEEEECCCCCCEEEEEE-
T ss_conf 9999999999999998616888778899999999999999987865262688874136777721675378885689961-
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCC-----CCCC
Q ss_conf 332222222-2213543333322111111111223332234544332------221111222211222222-----2221
Q gi|254780531|r 159 GKVQITTID-YYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLK------DIDVSVYDASGTISTKKF-----KLAT 226 (452)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~ 226 (452)
T Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (475)
T PRK12806 162 GSIKASSIGGIATATGTEVAGAA-ATDITIAIGGGAATSINSSANFTGALNGQDATSAY-AKAAAINDAGIGGLSVTAST 239 (475)
T ss_pred CCCCCCCCCCEEEECCCEECCCC-CCEEEEEECCCCCEEECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEEEEC
T ss_conf 44311222550110231102443-20146750465311102333023102454301344-33211023454533565303
Q ss_pred CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111----111101001122210123333443322222332222210000012234444321100123321110000
Q gi|254780531|r 227 TSGAWLK----AANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPG 302 (452)
Q Consensus 227 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (452)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~i~~~~~ 317 (475)
T PRK12806 240 SGTQAVGAIGGTAGDTYNLTINGVAIYTNLNVAT--ALTNSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTES 317 (475)
T ss_pred CCCEEEEECCCCCCCCEEEEECCEEEEECCCCCC--CCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf 4421321023455652133312402441132000--23422688875212333414887136606898405641588503
Q ss_pred CCCCCCC--CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0000111--1111122344443------3223222333222221000001223344432100000057899999999999
Q gi|254780531|r 303 YTNSTVA--KVGNTHYYVDTES------TTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKC 374 (452)
Q Consensus 303 ~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~ 374 (452)
T Consensus 318 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~g~~~idv~t~~~A~~Ai~~ID~AI~~ 397 (475)
T PRK12806 318 GTGFTAGTDGLTVTGGAFDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNS 397 (475)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 54200245431320454344113301111221010154010012223344444453334454377799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r 375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 398 V~~~Ra~lGA~qNRLe~~i~nL~~~~eN~~aA~SrI~DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~LL~ 474 (475)
T PRK12806 398 VNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999987089999999999999999999997546450229999999999999999999999996507689998608