HHsearch alignment for GI: 254780531 and conserved domain: PRK13588

>PRK13588 flagellin B; Provisional.
Probab=100.00  E-value=0  Score=506.13  Aligned_cols=449  Identities=16%  Similarity=0.164  Sum_probs=244.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
T Consensus         3 ~~IntNi~Al~a~~~L~~~~~~l~~slerLSSG~RIN~A~DDAAGlaIs~rmrsQi~gl~qA~rNa~dgiSliQTAEGAL   82 (514)
T PRK13588          3 FRINTNIAALNAHANGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQAANLGQAIRNANDAIGIVQTADKAM   82 (514)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47956899999999999999999999997521065356430377899999999999889999986888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN  158 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  158 (452)
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~t~s~~dR~alQ~Ei~qL~~EIdrIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~ti~~~~~  162 (514)
T PRK13588         83 DEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG  162 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEECCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf             99999999999999987037898889999999999999999877652623888503677777128853788854788504


Q ss_pred             CCCCCCCCCCCCCC-------CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC------CCC
Q ss_conf             33222222222135-------43333322111111--1112233322345443-32221111222211222------222
Q gi|254780531|r  159 GKVQITTIDYYLDP-------ETVLLDSSTDGTER--YGLLDRNHKIKVEPQV-LKDIDVSVYDASGTIST------KKF  222 (452)
Q Consensus       159 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~  222 (452)
T Consensus       163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  242 (514)
T PRK13588        163 ATSSDKIGHVRFETSSFSGEGMLASAAAQNLTEVGLKFKQVDGVNDYKIETVRISTSAGTGIGALAEIINKFSDTLGVRA  242 (514)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf             54355434302320243333320000034555410244202454431023457630146406778765304455443047


Q ss_pred             CCCCCCCCCCCCCCC----------CCC--------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             222111111111111----------010--------01122210123-33344332222233222221000001223444
Q gi|254780531|r  223 KLATTSGAWLKAANA----------TFD--------QAKGIATIPVP-LPAAPAAPNTTSGTSGSKSPSVAASATYIRMG  283 (452)
Q Consensus       223 ~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (452)
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~-~~~g~~~~~~~~g~~i~~~~  321 (514)
T PRK13588        243 SYNVMATGGTPIQSGTVRELTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEASL-DIQGRINLTSRDGRAISVHG  321 (514)
T ss_pred             EEEEEECCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCHHHHHHHCCCCCCCEEEEE-ECCCCEEEEECCCCEEEEEC
T ss_conf             89986314532234430135541401022101002465402555430323444426896-04660788723772389840


Q ss_pred             CC---------CCCCCCCCCCCCCCCCCCCCCCC-----CCCC-CCCCCCCCCCCC-C---------CCCCCCCCCCCCC
Q ss_conf             43---------21100123321110000000011-----1111-112234444332-2---------3222333222221
Q gi|254780531|r  284 NS---------DIWVRATTKNSITSDPGYTNSTV-----AKVG-NTHYYVDTESTT-L---------DSRKDLPKEIDSG  338 (452)
Q Consensus       284 ~~---------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~-~---------~~~~~~~~~~~~~  338 (452)
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  401 (514)
T PRK13588        322 ASASGQVFGGGNFAGISGTQHAFVGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIIDANVASAAGAN  401 (514)
T ss_pred             CCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCC
T ss_conf             45555000344101024553200021135520442035412333333310134553002320122441024200013420


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHH
Q ss_conf             00000122334443210000005789999999999999999998789999999999999999999973062220258999
Q gi|254780531|r  339 YSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASE  418 (452)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e  418 (452)
T Consensus       402 ~~~~~~~~~~~~~~~~v~t~~~A~~ai~~iD~Ai~~Vs~~Ra~LGA~QNRLe~ti~nL~~~~eNl~aA~SrI~DaDmA~E  481 (514)
T PRK13588        402 ANGAQAETNSQGIGAGVTSLKGAMIVMDMAESARKQLDKIRSDLGSVQNQLVSTINNISVTQVNVKAAESQIRDVDFAEE  481 (514)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12432212133335565327779999999999999999999877299999999999899999999999888985219999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999720688987525
Q gi|254780531|r  419 STRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       419 ~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
T Consensus       482 ma~lTk~qIL~QAg~amLAQANq~pQ~VL~LLq  514 (514)
T PRK13588        482 SANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ  514 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf             999999999999999999998256688998429