HHsearch alignment for GI: 254780531 and conserved domain: PRK13588
>PRK13588 flagellin B; Provisional.
Probab=100.00 E-value=0 Score=506.13 Aligned_cols=449 Identities=16% Similarity=0.164 Sum_probs=244.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
T Consensus 3 ~~IntNi~Al~a~~~L~~~~~~l~~slerLSSG~RIN~A~DDAAGlaIs~rmrsQi~gl~qA~rNa~dgiSliQTAEGAL 82 (514)
T PRK13588 3 FRINTNIAALNAHANGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQAANLGQAIRNANDAIGIVQTADKAM 82 (514)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47956899999999999999999999997521065356430377899999999999889999986888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
T Consensus 83 ~Ev~~iLqRmRELAVQAAN~t~s~~dR~alQ~Ei~qL~~EIdrIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~ti~~~~~ 162 (514)
T PRK13588 83 DEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG 162 (514)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEECCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 99999999999999987037898889999999999999999877652623888503677777128853788854788504
Q ss_pred CCCCCCCCCCCCCC-------CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC------CCC
Q ss_conf 33222222222135-------43333322111111--1112233322345443-32221111222211222------222
Q gi|254780531|r 159 GKVQITTIDYYLDP-------ETVLLDSSTDGTER--YGLLDRNHKIKVEPQV-LKDIDVSVYDASGTIST------KKF 222 (452)
Q Consensus 159 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~ 222 (452)
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 242 (514)
T PRK13588 163 ATSSDKIGHVRFETSSFSGEGMLASAAAQNLTEVGLKFKQVDGVNDYKIETVRISTSAGTGIGALAEIINKFSDTLGVRA 242 (514)
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf 54355434302320243333320000034555410244202454431023457630146406778765304455443047
Q ss_pred CCCCCCCCCCCCCCC----------CCC--------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 222111111111111----------010--------01122210123-33344332222233222221000001223444
Q gi|254780531|r 223 KLATTSGAWLKAANA----------TFD--------QAKGIATIPVP-LPAAPAAPNTTSGTSGSKSPSVAASATYIRMG 283 (452)
Q Consensus 223 ~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (452)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~-~~~g~~~~~~~~g~~i~~~~ 321 (514)
T PRK13588 243 SYNVMATGGTPIQSGTVRELTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEASL-DIQGRINLTSRDGRAISVHG 321 (514)
T ss_pred EEEEEECCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCHHHHHHHCCCCCCCEEEEE-ECCCCEEEEECCCCEEEEEC
T ss_conf 89986314532234430135541401022101002465402555430323444426896-04660788723772389840
Q ss_pred CC---------CCCCCCCCCCCCCCCCCCCCCCC-----CCCC-CCCCCCCCCCCC-C---------CCCCCCCCCCCCC
Q ss_conf 43---------21100123321110000000011-----1111-112234444332-2---------3222333222221
Q gi|254780531|r 284 NS---------DIWVRATTKNSITSDPGYTNSTV-----AKVG-NTHYYVDTESTT-L---------DSRKDLPKEIDSG 338 (452)
Q Consensus 284 ~~---------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~-~---------~~~~~~~~~~~~~ 338 (452)
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 401 (514)
T PRK13588 322 ASASGQVFGGGNFAGISGTQHAFVGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIIDANVASAAGAN 401 (514)
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCC
T ss_conf 45555000344101024553200021135520442035412333333310134553002320122441024200013420
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHH
Q ss_conf 00000122334443210000005789999999999999999998789999999999999999999973062220258999
Q gi|254780531|r 339 YSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASE 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e 418 (452)
T Consensus 402 ~~~~~~~~~~~~~~~~v~t~~~A~~ai~~iD~Ai~~Vs~~Ra~LGA~QNRLe~ti~nL~~~~eNl~aA~SrI~DaDmA~E 481 (514)
T PRK13588 402 ANGAQAETNSQGIGAGVTSLKGAMIVMDMAESARKQLDKIRSDLGSVQNQLVSTINNISVTQVNVKAAESQIRDVDFAEE 481 (514)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12432212133335565327779999999999999999999877299999999999899999999999888985219999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999720688987525
Q gi|254780531|r 419 STRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 419 ~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 482 ma~lTk~qIL~QAg~amLAQANq~pQ~VL~LLq 514 (514)
T PRK13588 482 SANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf 999999999999999999998256688998429