HHsearch alignment for GI: 254780531 and conserved domain: TIGR02550
>TIGR02550 flagell_flgL flagellar hook-associated protein 3; InterPro: IPR013384 FlgL (or HAP3) proteins are flagellar hook-associated proteins encoded in bacterial flagellar operons. An N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved in this family, though members show considerable length heterogeneity between these two well-conserved terminal regions - proteins in this family range from 287 to more than 500 residues in length. ; GO: 0001539 ciliary or flagellar motility, 0009424 flagellin-based flagellum hook.
Probab=100.00 E-value=2.7e-36 Score=239.55 Aligned_cols=384 Identities=14% Similarity=0.082 Sum_probs=237.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 1 r~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~~sddp~~~~~~~~~~~~~~~~~q~~~n~~~~~~~l~~~~~~l~ 80 (393)
T TIGR02550 1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96513567777777777777888877776420110244222578888887777777766666667777766665544444
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 99999999999875303776---30356788999999999998630012110013566654322334332221-112333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGS-FIRDDN 158 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~-~~~~~~ 158 (452)
T Consensus 81 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~l~~~an~~d~~g~y~f~g~~~~~~pf~~~~~~~~~~~~g~~ 160 (393)
T TIGR02550 81 SVGDLLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLLSLANTKDGNGRYIFSGTKTDTPPFSEDGGGSGVTYAGDG 160 (393)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45677888888887642255787789999999999998777641011357632204655565553214665431003653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r 159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT 238 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (452)
T Consensus 161 -~~~~~~~~~~~~~~~~~g~~~~~-~~~~-~~-~~~~~~~~~~-~-~~-~~-~-~-~~~-~~~~~~~~~~~~-------- 221 (393)
T TIGR02550 161 -QRIVQVASSRSMPIGLPGDKVFM-SIPN-DG-YVVNAAASQT-D-LL-AA-I-L-VDT-IGRYTFVDPLEA-------- 221 (393)
T ss_pred -CCCEEEECCCCCCCCCCCCHHCC-CCCC-CC-CCCCCCCCCC-C-CH-HH-H-C-CCC-CCCCCCCCCCCC--------
T ss_conf -00012302341013444200101-2443-32-2110001121-1-00-00-0-0-110-112111112222--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10011222101233334433222223322222100000122344443211001233211100000000111111112234
Q gi|254780531|r 239 FDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYV 318 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (452)
T Consensus 222 ---~-~~~~~~-~~---~~-~~-~-~-~~~~~~~~~~~~~~-~~~~~~------------~~------~-~----~~~-- 263 (393)
T TIGR02550 222 ---G-LELLGV-LA---ND-AV-S-A-TDIITESLEIGTTG-IKIKLN------------DE------L-S----SVL-- 263 (393)
T ss_pred ---C-HHHHCC-CC---CC-CC-C-C-CCCHHHHHHCCCCC-CCCCCC------------CC------C-C----CCC--
T ss_conf ---0-011000-01---01-00-0-0-00000000002121-123332------------10------0-0----100--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 444332232223332222210000012233444321---00000057899999999999999999987899999999999
Q gi|254780531|r 319 DTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDA---YNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDF 395 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~ 395 (452)
T Consensus 264 ~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 340 (393)
T TIGR02550 264 T-G-L-APPGNLEKSVFSTGDDLFAALKSLEDALSSGDQAAILAALSASLNELDKALDNVLSARAEVGARLNRLELLESR 340 (393)
T ss_pred C-C-C-CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0-1-2-21001101210025789999887654202320356677777887667767766666555543356666666654
Q ss_pred HHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999973062220258999999999999999999999999720688987525
Q gi|254780531|r 396 IKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 396 ~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 341 ~~~~~~~~~~~~s~~~d~d~~~~i~~~~~~~~~~~a~~~~~~~~~~-----~sl~~ 391 (393)
T TIGR02550 341 LSEQKLVLTEVLSDLEDVDLAEAISDLTMQQSALQAALKAFAKIQQ-----LSLFD 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_conf 3444556666655544102678888888889999999987666520-----02220