HHsearch alignment for GI: 254780531 and conserved domain: pfam00700
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=99.83 E-value=2.5e-20 Score=141.93 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999878999999999999999999997306222025899999999999999999999999972068
Q gi|254780531|r 365 VSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTA 444 (452)
Q Consensus 365 l~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~ 444 (452)
T Consensus 1 i~~id~Ai~~v~~~ra~lGa~qnRl~~~~~~l~~~~~n~~~a~s~i~D~D~Aee~t~l~~~qil~qas~a~~aqanq--- 77 (84)
T pfam00700 1 IDILDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQILLQASYALTAQANQ--- 77 (84)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 91889999999999998859999999999889999999999998866650999999999999999999999999867---
Q ss_pred HHHHHHC
Q ss_conf 8987525
Q gi|254780531|r 445 RILSLFR 451 (452)
Q Consensus 445 ~vL~L~~ 451 (452)
T Consensus 78 --lslln 82 (84)
T pfam00700 78 --LSLLN 82 (84)
T ss_pred --HHHHH
T ss_conf --88886