HHsearch alignment of GI: 254780531 and MMDB domain: 1ucu_A_1-40_455-494

>1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}

Probab=98.41  E-value=1.1e-06  Score=58.06  Aligned_cols=43  Identities=30%  Similarity=0.384  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHH
Q ss_conf             4045799999999999999999999999851223688313899
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAA   45 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~   45 (452)
                      +|+||+.++++.++|...+..|.++++|||||+|||+|=-|-+
T Consensus         3 ~In~Ni~alna~r~l~~~~~~l~~sm~rLSSG~RINsADaD~A   45 (80)
T 1ucu_A            3 VINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSDYA   45 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCCCSH
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHCHHH
T ss_conf             9974099999999999999999999998611486478213199