HHsearch alignment of GI: 254780531 and MMDB domain: 1ucu_A_41-169_400-454
>1ucu_A (A:41-169,A:400-454) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}
Probab=100.00 E-value=5.2e-35 Score=231.28 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=149.6
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHH
Q ss_conf 13899999999999999999999998999999999999999999999999999875303776---303567889999999
Q gi|254780531|r 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQS 117 (452)
Q Consensus 41 sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~ 117 (452)
||||++++++++|++++.+++||.+|++++.+||+++|++|.+++++|+|||||+||++|++ .||.+++.|+++|++
T Consensus 1 SDDpa~~a~s~~l~s~i~~l~q~~~N~~~a~s~lqtae~aL~~i~~iLqrirelavqaangt~s~~dR~ai~~Ei~~L~~ 80 (184)
T 1ucu_A 1 KDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 80 (184)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10699999999999999999999999999999999999999999999999999999761688765668888877555555
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998630012110013566654322334332221112333332222222221354333332211111111122333223
Q gi|254780531|r 118 QLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIK 197 (452)
Q Consensus 118 ~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
+|.+|+++++|||+|||+|+.....++..........
T Consensus 81 ei~~ian~T~fnG~~Lf~Gs~~~t~~~~~~~~~~~~~------------------------------------------- 117 (184)
T 1ucu_A 81 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDI------------------------------------------- 117 (184)
T ss_dssp HHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEE-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEE-------------------------------------------
T ss_conf 5555542456655432144554315521444411231-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 45443322211112222112222222221111111111110100112221012333344332222233222221000001
Q gi|254780531|r 198 VEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASA 277 (452)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (452)
..
T Consensus 118 --------------------~~---------------------------------------------------------- 119 (184)
T 1ucu_A 118 --------------------DL---------------------------------------------------------- 119 (184)
T ss_dssp --------------------EE----------------------------------------------------------
T ss_pred --------------------CC----------------------------------------------------------
T ss_conf --------------------03----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22344443211001233211100000000111111112234444332232223332222210000012233444321000
Q gi|254780531|r 278 TYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNE 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (452)
..........+
T Consensus 120 ---------------------------------------------------------------------~~~~~~~~~~~ 130 (184)
T 1ucu_A 120 ---------------------------------------------------------------------KQINSQTLGLA 130 (184)
T ss_dssp ---------------------------------------------------------------------CCCSTTTTTCC
T ss_pred ---------------------------------------------------------------------CCCCCCCCCCH
T ss_conf ---------------------------------------------------------------------33332223324
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 000578999999999999999999878999999999999999999997306222
Q gi|254780531|r 358 KLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLV 411 (452)
Q Consensus 358 ~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~ 411 (452)
...+..+|..||.|+..|...|+++||.|||||+.++++....+|+++++||||
T Consensus 131 ~~~a~~~~~~~d~ai~~~~~~r~~lga~qnrl~~~~~nl~~~~~n~~~a~s~i~ 184 (184)
T 1ucu_A 131 ATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIE 184 (184)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788999999999999999999999879999999999999999999999854687