Query gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 452 No_of_seqs 143 out of 3473 Neff 12.3 Searched_HMMs 33803 Date Wed Jun 1 16:47:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780531.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ucu_A Phase 1 flagellin; fla 100.0 5.2E-35 1.5E-39 231.3 19.4 181 41-411 1-184 (184) 2 >2d4x_A Flagellar HOOK-associa 100.0 3.7E-34 1.1E-38 226.1 14.4 244 41-418 2-248 (248) 3 >2zbi_A Flagellin homolog; fla 100.0 4.3E-30 1.3E-34 201.2 14.6 167 55-411 2-171 (174) 4 >1io1_A Phase 1 flagellin; bet 100.0 1.4E-29 4.2E-34 198.0 15.9 91 53-143 1-94 (168) 5 >1ory_B Flagellin; flagellar c 99.6 1.5E-15 4.6E-20 112.2 3.0 54 398-451 2-55 (55) 6 >1ucu_A Phase 1 flagellin; fla 99.4 2.5E-12 7.3E-17 92.6 7.7 58 394-451 22-80 (80) 7 >1ucu_A Phase 1 flagellin; fla 98.4 1.1E-06 3.3E-11 58.1 7.7 43 3-45 3-45 (80) 8 >2d4y_A HAP1, flagellar HOOK-a 87.8 1.3 4E-05 20.8 18.5 88 38-125 58-151 (376) 9 >3bj4_A Potassium voltage-gate 36.0 20 0.0006 13.7 4.1 19 381-399 14-32 (49) 10 >3hfe_A Potassium voltage-gate 34.1 22 0.00064 13.5 3.7 19 381-399 7-25 (31) 11 >2hld_G ATP synthase gamma cha 20.3 39 0.0011 11.9 5.1 49 375-423 223-271 (278) No 1 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:41-169,A:400-454) Probab=100.00 E-value=5.2e-35 Score=231.28 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=149.6 Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHH Q ss_conf 13899999999999999999999998999999999999999999999999999875303776---303567889999999 Q gi|254780531|r 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQS 117 (452) Q Consensus 41 sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~ 117 (452) ||||++++++++|++++.+++||.+|++++.+||+++|++|.+++++|+|||||+||++|++ .||.+++.|+++|++ T Consensus 1 SDDpa~~a~s~~l~s~i~~l~q~~~N~~~a~s~lqtae~aL~~i~~iLqrirelavqaangt~s~~dR~ai~~Ei~~L~~ 80 (184) T 1ucu_A 1 KDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 80 (184) T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 10699999999999999999999999999999999999999999999999999999761688765668888877555555 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99998630012110013566654322334332221112333332222222221354333332211111111122333223 Q gi|254780531|r 118 QLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIK 197 (452) Q Consensus 118 ~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452) +|.+|+++++|||+|||+|+.....++.......... T Consensus 81 ei~~ian~T~fnG~~Lf~Gs~~~t~~~~~~~~~~~~~------------------------------------------- 117 (184) T 1ucu_A 81 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDI------------------------------------------- 117 (184) T ss_dssp HHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEE------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEE------------------------------------------- T ss_conf 5555542456655432144554315521444411231------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC Q ss_conf 45443322211112222112222222221111111111110100112221012333344332222233222221000001 Q gi|254780531|r 198 VEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASA 277 (452) Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (452) .. T Consensus 118 --------------------~~---------------------------------------------------------- 119 (184) T 1ucu_A 118 --------------------DL---------------------------------------------------------- 119 (184) T ss_dssp --------------------EE---------------------------------------------------------- T ss_pred --------------------CC---------------------------------------------------------- T ss_conf --------------------03---------------------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22344443211001233211100000000111111112234444332232223332222210000012233444321000 Q gi|254780531|r 278 TYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNE 357 (452) Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (452) ..........+ T Consensus 120 ---------------------------------------------------------------------~~~~~~~~~~~ 130 (184) T 1ucu_A 120 ---------------------------------------------------------------------KQINSQTLGLA 130 (184) T ss_dssp ---------------------------------------------------------------------CCCSTTTTTCC T ss_pred ---------------------------------------------------------------------CCCCCCCCCCH T ss_conf ---------------------------------------------------------------------33332223324 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 000578999999999999999999878999999999999999999997306222 Q gi|254780531|r 358 KLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLV 411 (452) Q Consensus 358 ~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~ 411 (452) ...+..+|..||.|+..|...|+++||.|||||+.++++....+|+++++|||| T Consensus 131 ~~~a~~~~~~~d~ai~~~~~~r~~lga~qnrl~~~~~nl~~~~~n~~~a~s~i~ 184 (184) T 1ucu_A 131 ATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIE 184 (184) T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 788999999999999999999999879999999999999999999999854687 No 2 >>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} (A:) Probab=100.00 E-value=3.7e-34 Score=226.07 Aligned_cols=244 Identities=12% Similarity=0.043 Sum_probs=163.5 Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHH Q ss_conf 13899999999999999999999998999999999999999999999999999875303776---303567889999999 Q gi|254780531|r 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQS 117 (452) Q Consensus 41 sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~ 117 (452) ||||++++++++|+.++.+++||++|+..+++||+++|++|.++.++|+|+|||+||++|++ .||.+|+.|+++|++ T Consensus 2 SDDp~~~~~a~~l~~~~~~~~q~~~Ni~~a~~~l~~ae~aL~~i~~~l~~~k~l~vqa~ngt~s~~dr~~i~~ei~~l~~ 81 (248) T 2d4x_A 2 SDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRD 81 (248) T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 96889999999999999999999999999999999999999999999999999999751477652228999889999889 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99998630012110013566654322334332221112333332222222221354333332211111111122333223 Q gi|254780531|r 118 QLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIK 197 (452) Q Consensus 118 ~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452) +|.+++|+++|+|+|||.|......++........................... ....... T Consensus 82 ~i~~~an~t~~~g~~lf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 142 (248) T 2d4x_A 82 QLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIG-------------------HTGAQIF 142 (248) T ss_dssp HHHHHHTCBCTTSCBTTSTTCTTSCSBCTTTCCBCSCSSCEEEECSSSCEEEES-------------------CCHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCHHH T ss_conf 999998621024531125755466530046754435332111123544322224-------------------3320110 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC Q ss_conf 45443322211112222112222222221111111111110100112221012333344332222233222221000001 Q gi|254780531|r 198 VEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASA 277 (452) Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (452) ........ .. . ......... . T Consensus 143 ~~~~~~~~-------------~~-----~-----------------------------------~~~~~~~~~-~----- 163 (248) T 2d4x_A 143 NSITSNAV-------------PE-----P-----------------------------------DGSDSEKNL-F----- 163 (248) T ss_dssp SCCCTTCC-------------CC-----T-----------------------------------TSCCCCCCH-H----- T ss_pred CCCCCCCC-------------CC-----C-----------------------------------CCCCCCHHH-H----- T ss_conf 13331222-------------22-----2-----------------------------------322100023-4----- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22344443211001233211100000000111111112234444332232223332222210000012233444321000 Q gi|254780531|r 278 TYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNE 357 (452) Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (452) ........................ T Consensus 164 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 187 (248) T 2d4x_A 164 --------------------------------------------------------VMLDTAIAALKTPVEGNNVEKEKA 187 (248) T ss_dssp --------------------------------------------------------HHHHHHHHHHTSCCTTCHHHHHHH T ss_pred --------------------------------------------------------HHHHCCCCCHHCCCCCCCCCCCCH T ss_conf --------------------------------------------------------442000001000000000011100 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHH Q ss_conf 0005789999999999999999998789999999999999999999973062220258999 Q gi|254780531|r 358 KLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASE 418 (452) Q Consensus 358 ~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e 418 (452) ......++..+|.+++.+...|+.+|+++||++...+++....+++++.+|+|+|+|||+. T Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~s~i~d~D~a~v 248 (248) T 2d4x_A 188 AAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLVDVDWNSV 248 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 0111223467899999999999998299999999999899999999999888763283259 No 3 >>2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A {Sphingomonas SP} (A:1-113,A:232-292) Probab=99.97 E-value=4.3e-30 Score=201.17 Aligned_cols=167 Identities=16% Similarity=0.230 Sum_probs=138.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999998999999999999999999999999999875303776---30356788999999999998630012110 Q gi|254780531|r 55 SDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGE 131 (452) Q Consensus 55 ~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~ 131 (452) +++.+++||.+|++++++||+++|++|+++.++|+|||||+||++|++ .||.+|+.|+++|+++|.+|+|+|+|||+ T Consensus 2 sqi~~l~q~~rN~~da~s~lqtAe~aL~~i~~iLqrireLavQAaNgt~s~~Dr~ai~~Ei~qL~~eI~~ian~T~fnG~ 81 (174) T 2zbi_A 2 AQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQ 81 (174) T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCEETTE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 05666999998799999999999999999999999999999987257999999999999999999999999985223276 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 01356665432233433222111233333222222222135433333221111111112233322345443322211112 Q gi|254780531|r 132 NWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVY 211 (452) Q Consensus 132 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (452) |||+|+.....|+.+.......... T Consensus 82 ~Lf~Gs~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 106 (174) T 2zbi_A 82 KLLDGSFNGVQFQIGANAGETIGVS------------------------------------------------------- 106 (174) T ss_dssp ESSBSCCCEEEEECSSSTTCEEEEE------------------------------------------------------- T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHH------------------------------------------------------- T ss_conf 6443321000111000000233221------------------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC Q ss_conf 22211222222222111111111111010011222101233334433222223322222100000122344443211001 Q gi|254780531|r 212 DASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRA 291 (452) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (452) T Consensus 107 -------------------------------------------------------------------------------- 106 (174) T 2zbi_A 107 -------------------------------------------------------------------------------- 106 (174) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 23321110000000011111111223444433223222333222221000001223344432100000057899999999 Q gi|254780531|r 292 TTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQ 371 (452) Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a 371 (452) ..........+..++..+|..||.| T Consensus 107 -------------------------------------------------------~~~~~~~~v~t~~~a~~ai~~id~a 131 (174) T 2zbi_A 107 -------------------------------------------------------KIXNAQTTVSSFTNAQQTITQIDNA 131 (174) T ss_dssp -------------------------------------------------------CCCBCSTCCSSHHHHHHHHHHHHHH T ss_pred -------------------------------------------------------HCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf -------------------------------------------------------0134222301177799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 9999999999878999999999999999999997306222 Q gi|254780531|r 372 IKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLV 411 (452) Q Consensus 372 ~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~ 411 (452) +..|...|+.|||.|||||++++++....+|+++++|... T Consensus 132 i~~v~~~r~~lGa~qnrl~~t~~nl~~~~~n~~aa~S~~~ 171 (174) T 2zbi_A 132 LKDINTARADLGAVQNRFTSTVANLQSXTENLSSALEHHH 171 (174) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999998757999999999999999999999986300 No 4 >>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} (A:1-117,A:348-398) Probab=99.97 E-value=1.4e-29 Score=198.05 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999998999999999999999999999999999875303776---303567889999999999986300121 Q gi|254780531|r 53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFN 129 (452) Q Consensus 53 l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~n 129 (452) |++++.+++||.+|+.++++||+++|++|.++.++|+|||||+||++|++ .||.+|+.|+++|++||.+|+|+++|| T Consensus 1 lrsqi~~l~q~~~N~~da~s~lqtAe~aL~~i~~iL~rirelavqaaNgt~s~~DR~ai~~Ei~qL~~eI~~ianst~fn 80 (168) T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (168) T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 94166659999998999999999999999999999999999999850578999999999999999999999999736208 Q ss_pred HHHCCCCCCCCCCC Q ss_conf 10013566654322 Q gi|254780531|r 130 GENWLRTDLGSSTA 143 (452) Q Consensus 130 G~~l~~g~~~~~~~ 143 (452) |+|||+|+.....+ T Consensus 81 G~~Lf~Gs~t~~~~ 94 (168) T 1io1_A 81 GVKVLAQDNTLTIQ 94 (168) T ss_dssp TBCTTTSCEEEEEE T ss_pred CCCCCCCCCCEEEE T ss_conf 80112567725897 No 5 >>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Probab=99.55 E-value=1.5e-15 Score=112.20 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=51.9 Q ss_pred HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999973062220258999999999999999999999999720688987525 Q gi|254780531|r 398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452) Q Consensus 398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452) +..+|+++++|+|+|+|||+|+++|+|.|||+|++++||+|||+.||.||+||| T Consensus 2 ~~~~N~~aA~SrI~DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vL~LLq 55 (55) T 1ory_B 2 VAKDNTDNAESIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 (55) T ss_dssp --------------CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC T ss_conf 268789999846540559999999999999999999999998526789997519 No 6 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=99.35 E-value=2.5e-12 Score=92.60 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=45.6 Q ss_pred HHHHHHHHHHHHHHCCEE-ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999997306222-0258999999999999999999999999720688987525 Q gi|254780531|r 394 DFIKLMRDAVEKGVGRLV-DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452) Q Consensus 394 ~~~~~~~~~~~~~~s~i~-D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452) ..+..-.+.+..++=--. |+|||+|+++|+|.|||+|++++||+|||+.||.||+||| T Consensus 22 ~~l~~sm~rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~LLq 80 (80) T 1ucu_A 22 SALGTAIERLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 80 (80) T ss_dssp HHHHHHHHHHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred HHHHHHHHHHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC T ss_conf 99999999861148647821319999999999999999999999997416789998409 No 7 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=98.41 E-value=1.1e-06 Score=58.06 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=39.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHH Q ss_conf 4045799999999999999999999999851223688313899 Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAA 45 (452) Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~ 45 (452) +|+||+.++++.++|...+..|.++++|||||+|||+|=-|-+ T Consensus 3 ~In~Ni~alna~r~l~~~~~~l~~sm~rLSSG~RINsADaD~A 45 (80) T 1ucu_A 3 VINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSDYA 45 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCCCSH T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHCHHH T ss_conf 9974099999999999999999999998611486478213199 No 8 >>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} (A:1-268,A:356-463) Probab=87.79 E-value=1.3 Score=20.85 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=63.2 Q ss_pred CCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HCCCCCCHHHHHHH Q ss_conf 883138999999999999999999999989999999999-999999999999999998753-----03776303567889 Q gi|254780531|r 38 SDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDI-AKAGMSKAIDVMSTIKNKITA-----GVERGTDSKSIQSE 111 (452) Q Consensus 38 ~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~-ae~~l~~~~~~l~r~relavq-----a~n~~~dr~a~~~e 111 (452) ..|.|.++....+.+.+.-...+.+..+.+.....-+.. .+....+|..++.++-+|=.+ +..+..+-..+.++ T Consensus 58 ~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~l~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndLlDq 137 (376) T 2d4y_A 58 SNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQ 137 (376) T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 68798899999999999999999999999999999999999999999999999999999999998614689990677899 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999998630 Q gi|254780531|r 112 ITQLQSQLRDIARG 125 (452) Q Consensus 112 ~~~l~~~i~~ian~ 125 (452) -++|.++|-.++.- T Consensus 138 RD~ll~eLS~~i~i 151 (376) T 2d4y_A 138 RDQLVSELNKIVGV 151 (376) T ss_dssp HHHHHHHHHHHSCE T ss_pred HHHHHHHHHHHCCC T ss_conf 99999998766070 No 9 >>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens} (A:) Probab=35.97 E-value=20 Score=13.67 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9878999999999999999 Q gi|254780531|r 381 KIGSISSRIHLQEDFIKLM 399 (452) Q Consensus 381 ~iGa~~nrle~~~~~~~~~ 399 (452) .||||.||+|.-+..+... T Consensus 14 tIGaRLNRvedKvtqmDq~ 32 (49) T 3bj4_A 14 TIGARLNRVEDKVTQLDQR 32 (49) T ss_dssp SHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 3988998899999999999 No 10 >>3hfe_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, trimer, alternative splicing, atrial fibrillation, cell membrane; 1.70A {Homo sapiens} PDB: 3hfc_A (A:) Probab=34.11 E-value=22 Score=13.49 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9878999999999999999 Q gi|254780531|r 381 KIGSISSRIHLQEDFIKLM 399 (452) Q Consensus 381 ~iGa~~nrle~~~~~~~~~ 399 (452) .||||.||+|.-...+... T Consensus 7 tigarlnrvedkvtq~dq~ 25 (31) T 3hfe_A 7 TIGARLNRVEDKVTQLDQR 25 (31) T ss_dssp SHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 0888887899999888776 No 11 >>2hld_G ATP synthase gamma chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_G (G:) Probab=20.32 E-value=39 Score=11.94 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=42.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH Q ss_conf 9999999878999999999999999999997306222025899999999 Q gi|254780531|r 375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS 423 (452) Q Consensus 375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~ 423 (452) +....++..|||+.++...++.+++...++-...+.+=+-+.+|+.+.- T Consensus 223 ~es~~sE~~aR~~aM~~At~Na~~~i~~L~~~yNk~RQ~~IT~El~EIv 271 (278) T 2hld_G 223 AQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDII 271 (278) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999899979999999999999999998899999999 Done!