HHsearch results for GI: 254780531 and protein with PDBid: 1io1_A
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=100.00 E-value=7.1e-38 Score=247.85 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998999999999999999999999999999875303776---303567889999999999986300121
Q gi|254780531|r 53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFN 129 (452)
Q Consensus 53 l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~n 129 (452)
++++|.+|+|++||++++++|||++|++|+++++||+|||||+|||+|++ .||++|+.|+++|++||.+|+++|+||
T Consensus 1 ~~~qi~gl~qa~~N~~d~~s~~qtae~al~e~~~iL~r~reLavqaan~t~t~~dr~ai~~E~~~L~~ei~~ia~~T~fn 80 (398)
T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 94056559999999999999999999999999999999999999861468999999999999999999999999738148
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 1001356665432
Q gi|254780531|r 130 GENWLRTDLGSST 142 (452)
Q Consensus 130 G~~l~~g~~~~~~ 142 (452)
|++||+|+.....
T Consensus 81 g~~Ll~Gs~~~~~ 93 (398)
T 1io1_A 81 GVKVLAQDNTLTI 93 (398)
T ss_dssp TBCTTTSCEEEEE
T ss_pred CCCCCCCCCCEEE
T ss_conf 8343256773699