HHsearch results for GI: 254780531 and protein with PDBid: 1ucu_A
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=100.00 E-value=0 Score=483.03 Aligned_cols=447 Identities=17% Similarity=0.149 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
++|+||+++++++++|++.+++|.++||||||||||++|+|||++++++++||+++.+++||+||+.++++||+++|++|
T Consensus 2 ~~i~tn~~~~~~~~~l~~~~~~l~~~~~~lssG~ri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~s~l~~ae~~L 81 (494)
T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGAL 81 (494)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09975199999999999999999999998601586588320589999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
+++.++|+|||||+||++|++ .||++++.|+++|++||++|+++++|||+|||+|+.....+.+.............
T Consensus 82 ~~v~~~L~r~relavqaan~~~s~~dr~ai~~ei~~l~~~i~~ia~~t~fnG~~Lf~G~~~~~~~~g~~~~~~~~~~~~~ 161 (494)
T 1ucu_A 82 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQ 161 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEECCC
T ss_conf 99999999999999976168876455777788999988777776545421413320114542278752157225640233
Q ss_pred CCCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3322222-2222135433333--221111111112233322345443------322211112222112222222221111
Q gi|254780531|r 159 GKVQITT-IDYYLDPETVLLD--SSTDGTERYGLLDRNHKIKVEPQV------LKDIDVSVYDASGTISTKKFKLATTSG 229 (452)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (452)
....... ............. ........................ .................. ... ....
T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (494)
T 1ucu_A 162 INSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAK-VTV-TGGT 239 (494)
T ss_dssp CSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBCTTSTTTCGGGCSSEEEECSSEEEETTTTEEEEE-EEE-ETCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-EEE-ECCC
T ss_conf 33222465310134444555420010023310233024421111234323221013320222011100000-122-0132
Q ss_pred CCCCCCCCCCCCCCCCCCC------CCCCCCCCC-------CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111101001122210------123333443-------322222332222210000012234444321100123321
Q gi|254780531|r 230 AWLKAANATFDQAKGIATI------PVPLPAAPA-------APNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNS 296 (452)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (452)
................... ......... .................... ..................
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~ 318 (494)
T 1ucu_A 240 GKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGV-TGTASVVKMSYTDNNGKT 318 (494)
T ss_dssp SCCEEEEEEECTTTCBEEESTTCSSCCTTSSCTTCCEEESEEEEEGGGTHHHHHHHHHTTC-CSCEEEEEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCEE
T ss_conf 4332212222445553000234433333443220223334310023332223321000243-332210001320332101
Q ss_pred CCCCCCC-------C-----CCCCC--CCCCCCCCCCCCCCCC--CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1100000-------0-----00111--1111122344443322--3222333-----22222100000122334443210
Q gi|254780531|r 297 ITSDPGY-------T-----NSTVA--KVGNTHYYVDTESTTL--DSRKDLP-----KEIDSGYSMVTLNITRHANTDAY 355 (452)
Q Consensus 297 ~~~~~~~-------~-----~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 355 (452)
....... . ..... ................ ....... .......................
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (494)
T 1ucu_A 319 IDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAE 398 (494)
T ss_dssp EEEEEEEEETTEEEEEEECTTSCEEECBCCEECSSSSEECCBCEEESTTSCEEEEEETTEEEEHHHHTTCBTTTSCCCCC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 01443223342100012344543123442000222034432100112234320000343111123332011221001213
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000578999999999999999999878999999999999999999997306222025899999999999999999999
Q gi|254780531|r 356 NEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQA 435 (452)
Q Consensus 356 ~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~ 435 (452)
.....+..+|..||.|+++|...|++|||++||||+.++++.+..+|+++++|+|+|+|||||+++|+|+||+||||++|
T Consensus 399 ~t~~~a~~al~~ID~Ai~~V~~~ra~lGA~~nrle~~~~nl~~~~~n~~~~~s~i~DaD~a~e~~~l~~~qi~~Qaa~~~ 478 (494)
T 1ucu_A 399 AAATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSV 478 (494)
T ss_dssp CCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43788999999999999999999999879999999999999999999999854577140999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999720688987525
Q gi|254780531|r 436 LSIVNNSTARILSLFR 451 (452)
Q Consensus 436 laqan~~~~~vL~L~~ 451 (452)
|+||||.||.||+|||
T Consensus 479 laqAn~~~q~vl~Ll~ 494 (494)
T 1ucu_A 479 LAQANQVPQNVLSLLR 494 (494)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHCCCHHHHHHHCC
T ss_conf 9997526789998409