Query gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs 143 out of 3473
Neff 12.3
Searched_HMMs 23785
Date Tue May 31 21:56:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780531.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ucu_A Phase 1 flagellin; flag 100.0 0 0 483.0 32.8 447 2-451 2-494 (494)
2 3k8w_A Flagellin homolog; flag 100.0 0 0 313.3 20.7 129 20-148 1-132 (326)
3 1io1_A Phase 1 flagellin; beta 100.0 7.1E-38 3E-42 247.9 19.9 90 53-142 1-93 (398)
4 2d4x_A Flagellar HOOK-associat 100.0 4.1E-35 1.7E-39 231.0 15.1 105 41-145 2-109 (248)
5 1ory_B Flagellin; flagellar ch 99.5 2.5E-15 1.1E-19 110.0 3.0 53 399-451 3-55 (55)
6 3k1h_A HP1076, putative unchar 99.3 5.9E-14 2.5E-18 101.6 -0.8 81 46-139 6-86 (158)
7 2d4y_A HAP1, flagellar HOOK-as 95.3 0.1 4.4E-06 26.7 18.1 53 372-424 411-463 (463)
8 3k1i_C HP1076, putative unchar 92.4 0.33 1.4E-05 23.7 6.3 97 29-139 9-106 (178)
9 3a69_A Flagellar HOOK protein 87.2 0.85 3.6E-05 21.1 4.9 37 413-449 365-401 (402)
10 2c5k_T Syntaxin TLG1, T-snare 52.1 7.9 0.00033 15.2 6.4 83 39-130 2-93 (95)
11 2xok_G ATP synthase subunit ga 34.2 15 0.00064 13.5 5.1 49 375-423 256-304 (311)
12 1vf6_A PALS-1, PALS1-associate 33.8 15 0.00065 13.5 4.3 50 83-132 4-70 (83)
13 3hfe_A Potassium voltage-gated 33.1 16 0.00066 13.4 3.0 19 381-399 7-25 (31)
14 3oee_G ATP synthase subunit ga 29.4 18 0.00077 13.0 5.1 49 375-423 223-271 (278)
15 3bj4_A Potassium voltage-gated 29.0 19 0.00078 13.0 4.1 19 381-399 14-32 (49)
16 2ck3_G ATP synthase gamma chai 23.5 23 0.00098 12.3 5.1 49 375-423 218-266 (272)
17 2qe7_G ATP synthase subunit ga 20.1 27 0.0012 11.9 3.9 48 376-423 232-279 (286)
No 1
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=100.00 E-value=0 Score=483.03 Aligned_cols=447 Identities=17% Similarity=0.149 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
++|+||+++++++++|++.+++|.++||||||||||++|+|||++++++++||+++.+++||+||+.++++||+++|++|
T Consensus 2 ~~i~tn~~~~~~~~~l~~~~~~l~~~~~~lssG~ri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~s~l~~ae~~L 81 (494)
T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGAL 81 (494)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09975199999999999999999999998601586588320589999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
+++.++|+|||||+||++|++ .||++++.|+++|++||++|+++++|||+|||+|+.....+.+.............
T Consensus 82 ~~v~~~L~r~relavqaan~~~s~~dr~ai~~ei~~l~~~i~~ia~~t~fnG~~Lf~G~~~~~~~~g~~~~~~~~~~~~~ 161 (494)
T 1ucu_A 82 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQ 161 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEECCC
T ss_conf 99999999999999976168876455777788999988777776545421413320114542278752157225640233
Q ss_pred CCCCCCC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3322222-2222135433333--221111111112233322345443------322211112222112222222221111
Q gi|254780531|r 159 GKVQITT-IDYYLDPETVLLD--SSTDGTERYGLLDRNHKIKVEPQV------LKDIDVSVYDASGTISTKKFKLATTSG 229 (452)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (452)
....... ............. ........................ .................. ... ....
T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 239 (494)
T 1ucu_A 162 INSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAK-VTV-TGGT 239 (494)
T ss_dssp CSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBCTTSTTTCGGGCSSEEEECSSEEEETTTTEEEEE-EEE-ETCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-EEE-ECCC
T ss_conf 33222465310134444555420010023310233024421111234323221013320222011100000-122-0132
Q ss_pred CCCCCCCCCCCCCCCCCCC------CCCCCCCCC-------CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111101001122210------123333443-------322222332222210000012234444321100123321
Q gi|254780531|r 230 AWLKAANATFDQAKGIATI------PVPLPAAPA-------APNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNS 296 (452)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (452)
................... ......... .................... ..................
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~ 318 (494)
T 1ucu_A 240 GKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGV-TGTASVVKMSYTDNNGKT 318 (494)
T ss_dssp SCCEEEEEEECTTTCBEEESTTCSSCCTTSSCTTCCEEESEEEEEGGGTHHHHHHHHHTTC-CSCEEEEEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCEE
T ss_conf 4332212222445553000234433333443220223334310023332223321000243-332210001320332101
Q ss_pred CCCCCCC-------C-----CCCCC--CCCCCCCCCCCCCCCC--CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1100000-------0-----00111--1111122344443322--3222333-----22222100000122334443210
Q gi|254780531|r 297 ITSDPGY-------T-----NSTVA--KVGNTHYYVDTESTTL--DSRKDLP-----KEIDSGYSMVTLNITRHANTDAY 355 (452)
Q Consensus 297 ~~~~~~~-------~-----~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 355 (452)
....... . ..... ................ ....... .......................
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (494)
T 1ucu_A 319 IDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAE 398 (494)
T ss_dssp EEEEEEEEETTEEEEEEECTTSCEEECBCCEECSSSSEECCBCEEESTTSCEEEEEETTEEEEHHHHTTCBTTTSCCCCC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 01443223342100012344543123442000222034432100112234320000343111123332011221001213
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000578999999999999999999878999999999999999999997306222025899999999999999999999
Q gi|254780531|r 356 NEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQA 435 (452)
Q Consensus 356 ~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~ 435 (452)
.....+..+|..||.|+++|...|++|||++||||+.++++.+..+|+++++|+|+|+|||||+++|+|+||+||||++|
T Consensus 399 ~t~~~a~~al~~ID~Ai~~V~~~ra~lGA~~nrle~~~~nl~~~~~n~~~~~s~i~DaD~a~e~~~l~~~qi~~Qaa~~~ 478 (494)
T 1ucu_A 399 AAATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSV 478 (494)
T ss_dssp CCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43788999999999999999999999879999999999999999999999854577140999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999720688987525
Q gi|254780531|r 436 LSIVNNSTARILSLFR 451 (452)
Q Consensus 436 laqan~~~~~vL~L~~ 451 (452)
|+||||.||.||+|||
T Consensus 479 laqAn~~~q~vl~Ll~ 494 (494)
T 1ucu_A 479 LAQANQVPQNVLSLLR 494 (494)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHCCCHHHHHHHCC
T ss_conf 9997526789998409
No 2
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=100.00 E-value=0 Score=313.33 Aligned_cols=129 Identities=26% Similarity=0.375 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999851223688313899999999999999999999998999999999999999999999999999875303
Q gi|254780531|r 20 INYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGV 99 (452)
Q Consensus 20 ~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~ 99 (452)
.|++|+++|+||||||||++|+|||++++++++||.++..++||++|+..+++||+++|++|+++.++|+|||||+||++
T Consensus 1 ~q~~l~~~~~~lstGkri~~~sDdp~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~e~~l~~~~~~l~~~rel~vqa~ 80 (326)
T 3k8w_A 1 TQNSLSTSLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQAS 80 (326)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96789999998624276478100599999999999999999999998999999999999999999999999999999751
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 776---3035678899999999999863001211001356665432233433
Q gi|254780531|r 100 ERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKS 148 (452)
Q Consensus 100 n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~ 148 (452)
|++ .||++|+.|+++|++||++|+|+++|||+|||+|......++.+..
T Consensus 81 n~t~~~~dr~~i~~e~~~l~~ql~~ian~~~~nG~~lf~g~~~~~~~~~g~~ 132 (326)
T 3k8w_A 81 NGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGAN 132 (326)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHCEETTEECSSSCCCEEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
T ss_conf 3667667699899999999999999998732257222013332110013555
No 3
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=100.00 E-value=7.1e-38 Score=247.85 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998999999999999999999999999999875303776---303567889999999999986300121
Q gi|254780531|r 53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFN 129 (452)
Q Consensus 53 l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~n 129 (452)
++++|.+|+|++||++++++|||++|++|+++++||+|||||+|||+|++ .||++|+.|+++|++||.+|+++|+||
T Consensus 1 ~~~qi~gl~qa~~N~~d~~s~~qtae~al~e~~~iL~r~reLavqaan~t~t~~dr~ai~~E~~~L~~ei~~ia~~T~fn 80 (398)
T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 94056559999999999999999999999999999999999999861468999999999999999999999999738148
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 1001356665432
Q gi|254780531|r 130 GENWLRTDLGSST 142 (452)
Q Consensus 130 G~~l~~g~~~~~~ 142 (452)
|++||+|+.....
T Consensus 81 g~~Ll~Gs~~~~~ 93 (398)
T 1io1_A 81 GVKVLAQDNTLTI 93 (398)
T ss_dssp TBCTTTSCEEEEE
T ss_pred CCCCCCCCCCEEE
T ss_conf 8343256773699
No 4
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=100.00 E-value=4.1e-35 Score=230.97 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=98.6
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHH
Q ss_conf 13899999999999999999999998999999999999999999999999999875303776---303567889999999
Q gi|254780531|r 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQS 117 (452)
Q Consensus 41 sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~ 117 (452)
||||++++++++|++++..++||++|+..+.+||+++|++|.++.++|+|||||++|++|++ .||++++.|+++|++
T Consensus 2 SDDP~~~~~~~~l~~~~~~l~q~~~N~~~a~s~l~~~d~aL~~i~~il~r~relavqa~n~t~s~~dr~~~~~e~~~l~~ 81 (248)
T 2d4x_A 2 SDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRD 81 (248)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96889999999999999999999999999999999999999999999999999999851678887789888999999899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999863001211001356665432233
Q gi|254780531|r 118 QLRDIARGSSFNGENWLRTDLGSSTASI 145 (452)
Q Consensus 118 ~i~~ian~t~~nG~~l~~g~~~~~~~~~ 145 (452)
+|.+++|.++|+|+|||.|......++.
T Consensus 82 ~i~~iaN~t~~~g~~lf~G~~~~t~pf~ 109 (248)
T 2d4x_A 82 QLMNLANSTDGNGRYIFAGYKTEAAPFD 109 (248)
T ss_dssp HHHHHHTCBCTTSCBTTSTTCTTSCSBC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 9999975102377321367555666310
No 5
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus}
Probab=99.52 E-value=2.5e-15 Score=109.95 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999973062220258999999999999999999999999720688987525
Q gi|254780531|r 399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
..+|+++++|+|+|+|||+|+++|+|.||++|++++||+|||+.|+.||+|||
T Consensus 3 a~eN~~~A~SrI~DaD~A~E~~~lak~qIL~qa~~amLaQAN~~~q~vL~LLq 55 (55)
T 1ory_B 3 AKDNTDNAESIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 (55)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 58789999857541559999999999999999999999998426789997519
No 6
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=99.33 E-value=5.9e-14 Score=101.59 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999899999999999999999999999999987530377630356788999999999998630
Q gi|254780531|r 46 YWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARG 125 (452)
Q Consensus 46 ~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~ 125 (452)
.++++.||.+++.++.|.+||++++++.+|++|++|.++.++++|||||+ ..|+.+|..++.+|+++
T Consensus 6 ~m~~as~mt~qi~~~~~~irnand~is~~Qtae~al~ei~~~lqrm~El~-------------~~e~~~L~~ei~~i~~n 72 (158)
T 3k1h_A 6 HMTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKD-------------ALQASIIKQELREIVEN 72 (158)
T ss_dssp --------------CEEECCSHHHHHHHHHHHHHHHHHHHHHTTTGGGSC-------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_conf 77777899999986889988278588899999999999999999998725-------------99999999999999995
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 01211001356665
Q gi|254780531|r 126 SSFNGENWLRTDLG 139 (452)
Q Consensus 126 t~~nG~~l~~g~~~ 139 (452)
++|||++||++.+.
T Consensus 73 t~FnG~~Lfd~~~~ 86 (158)
T 3k1h_A 73 CQFLASPLFDTQLN 86 (158)
T ss_dssp CEETTEECTTCEEE
T ss_pred CCCCCEECCCCCEE
T ss_conf 78977000276103
No 7
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=95.30 E-value=0.1 Score=26.73 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHH
Q ss_conf 99999999998789999999999999999999973062220258999999999
Q gi|254780531|r 372 IKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSA 424 (452)
Q Consensus 372 ~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~ 424 (452)
.+-.....+.+|...+..+...+..+.....++..+..+.-+++-||+++|-|
T Consensus 411 ~~~y~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVslDEE~~nLik 463 (463)
T 2d4y_A 411 NDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 463 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99999999999999999999999999999999999984406169999997549
No 8
>3k1i_C HP1076, putative uncharacterized protein; CO-chaperone, chaperone, flagellar system, helicobacter PYLO flagellum; 2.70A {Helicobacter pylori}
Probab=92.43 E-value=0.33 Score=23.66 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHHHHCCCCCCHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9985122368831389999-999999999999999999899999999999999999999999999987530377630356
Q gi|254780531|r 29 DRVSSGLRVSDAADNAAYW-SIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS 107 (452)
Q Consensus 29 ~qlstGkri~~~sDdp~~~-~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a 107 (452)
.-|.+=||-+..-+ +... ....+-+.++.....-++++++-+.-||+++.+|.-+.+...++. .++
T Consensus 9 ~~L~~lqKHLg~i~-~~ef~~n~~~~s~qi~kFse~IK~ANEfIGALQvadiaLkKl~k~~~~l~------~~~------ 75 (178)
T 3k1i_C 9 DILKTLQKHLGDVE-TSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLE------DKD------ 75 (178)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG------GSC------
T ss_pred HHHHHHHHHHCCCC-HHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCC------
T ss_conf 99999999856455-53420223788899998753012088999899999999999999874104------575------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78899999999999863001211001356665
Q gi|254780531|r 108 IQSEITQLQSQLRDIARGSSFNGENWLRTDLG 139 (452)
Q Consensus 108 ~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~ 139 (452)
......+.+++.+|++++.|-|..||+-...
T Consensus 76 -~~q~~~~~~~~~~ii~N~sFmg~aLFd~~L~ 106 (178)
T 3k1i_C 76 -ALQASIIKQELREIVENCQFLASPLFDTQLN 106 (178)
T ss_dssp -HHHHHHHHHHHHHHHHHCEETTEECTTSEEE
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH
T ss_conf -0678999999999998566045666442355
No 9
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=87.17 E-value=0.85 Score=21.15 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2589999999999999999999999997206889875
Q gi|254780531|r 413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL 449 (452)
Q Consensus 413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L 449 (452)
+|+.||+++|-+.|=.+||+..|+.-+.+.-+.+|.|
T Consensus 365 V~ldeEmtnli~~Q~aY~A~akvitt~demld~linl 401 (402)
T 3a69_A 365 VDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 (402)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999752664999999999705
No 10
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=52.10 E-value=7.9 Score=15.21 Aligned_cols=83 Identities=8% Similarity=0.163 Sum_probs=50.0
Q ss_pred CHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCCCHHHHH
Q ss_conf 831389999999999999999999999-8999999999999999999999999999--------8753037763035678
Q gi|254780531|r 39 DAADNAAYWSIAQIMKSDNGALSAVSD-AIGLGSSKVDIAKAGMSKAIDVMSTIKN--------KITAGVERGTDSKSIQ 109 (452)
Q Consensus 39 ~~sDdp~~~~~~~~l~~~~~~~~q~~~-n~~~a~~~l~~ae~~l~~~~~~l~r~re--------lavqa~n~~~dr~a~~ 109 (452)
+.+|||-- -.+---+-++..+.||.. +- -...+....++.+|+..+.| +.|-.-+...+-....
T Consensus 2 ~~~~DPFe-qVv~DT~EQ~~RL~q~L~r~~------~~~~~~~~~Ev~EIv~di~ETi~DL~kSI~Vmkr~~~~~i~~Re 74 (95)
T 2c5k_T 2 NNSEDPFQ-QVVKDTKEQLNRINNYITRHN------TAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGRE 74 (95)
T ss_dssp ---CCHHH-HHHHHHHHHHHHHHHHHHHTC------CC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHH
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 97646099-999869999999999998603------57753468999999999999999999999999982363257689
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999863001211
Q gi|254780531|r 110 SEITQLQSQLRDIARGSSFNG 130 (452)
Q Consensus 110 ~e~~~l~~~i~~ian~t~~nG 130 (452)
.++.+|.+++..+- +.||.
T Consensus 75 ~~v~~Lk~~l~kLk--~~f~~ 93 (95)
T 2c5k_T 75 AQVKNIKQQLDALK--LRFDR 93 (95)
T ss_dssp HHHHHHHHHHHHHH--HHHHT
T ss_pred HHHHHHHHHHHHHH--HHCCC
T ss_conf 89999999999998--71256
No 11
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=34.15 E-value=15 Score=13.49 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf 9999999878999999999999999999997306222025899999999
Q gi|254780531|r 375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS 423 (452)
Q Consensus 375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~ 423 (452)
+....++.+|||..++...++..++...++-...+.+=+-+.+|+++.-
T Consensus 256 les~aSE~aaRm~AM~~At~Na~eli~~L~l~yNk~RQa~IT~El~EIV 304 (311)
T 2xok_G 256 AQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDII 304 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999959999999999999999998899999999
No 12
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1 PDB: 1y76_A
Probab=33.78 E-value=15 Score=13.45 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999875303776303-----------------567889999999999986300121100
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERGTDS-----------------KSIQSEITQLQSQLRDIARGSSFNGEN 132 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~~dr-----------------~a~~~e~~~l~~~i~~ian~t~~nG~~ 132 (452)
.+..+|.|++......++-+.+. -.++.-+++|+++++.|..+...-|.-
T Consensus 4 rvlqiLERLQ~KL~~rGd~s~eekLs~~ks~LqSPLF~QILtlQ~SiqQLK~Qvn~~~es~~~~~~a 70 (83)
T 1vf6_A 4 QVLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILESGKETAAA 70 (83)
T ss_dssp -CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999875685616589999999858689999999999999999998888701277662
No 13
>3hfe_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, trimer, alternative splicing, atrial fibrillation, cell membrane; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=33.11 E-value=16 Score=13.39 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9878999999999999999
Q gi|254780531|r 381 KIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 381 ~iGa~~nrle~~~~~~~~~ 399 (452)
.||+|.||+|.-...+...
T Consensus 7 tigarlnrvedkvtqmd~k 25 (31)
T 3hfe_A 7 TIGARLNRVEDKVTQLDQR 25 (31)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 0888888898999999988
No 14
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3oe7_G*
Probab=29.38 E-value=18 Score=13.00 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf 9999999878999999999999999999997306222025899999999
Q gi|254780531|r 375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS 423 (452)
Q Consensus 375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~ 423 (452)
+....++.+|||..++...++..++...|+....+.+=+-+.+|+++.-
T Consensus 223 ~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~El~EIv 271 (278)
T 3oee_G 223 AQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDII 271 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999959999999999999999998899999999
No 15
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=29.00 E-value=19 Score=12.96 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9878999999999999999
Q gi|254780531|r 381 KIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 381 ~iGa~~nrle~~~~~~~~~ 399 (452)
.||||.||+|.-...+...
T Consensus 14 tigarlnrvedk~t~mDq~ 32 (49)
T 3bj4_A 14 TIGARLNRVEDKVTQLDQR 32 (49)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 2989998899999999999
No 16
>2ck3_G ATP synthase gamma chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Probab=23.52 E-value=23 Score=12.34 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf 9999999878999999999999999999997306222025899999999
Q gi|254780531|r 375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS 423 (452)
Q Consensus 375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~ 423 (452)
+....++-+|||..++...++.+++...++...-+.+=+-+.+|+.+.-
T Consensus 218 ~es~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~El~EIv 266 (272)
T 2ck3_G 218 KESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEII 266 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9989999999999999999859999999999999999999999999999
No 17
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=20.12 E-value=27 Score=11.92 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf 999999878999999999999999999997306222025899999999
Q gi|254780531|r 376 TAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS 423 (452)
Q Consensus 376 ~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~ 423 (452)
....++..|||..++...++.+++...++....+.+=+-+.+|..+.-
T Consensus 232 es~asE~~aR~~AM~~At~Na~~~i~~L~~~~Nr~RQ~~IT~El~EIv 279 (286)
T 2qe7_G 232 DAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIV 279 (286)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999989999999999999999999999999999
Done!