HHSEARCH alignment of GI: 254780531 and SCOP domain: d1io1a_

Alignment

Probab=100.00  E-value=6.3e-37  Score=240.60  Aligned_cols=90  Identities=19%  Similarity=0.260  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998999999999999999999999999999875303776---303567889999999999986300121100
Q gi|254780531|r   56 DNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGEN  132 (452)
Q Consensus        56 ~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~  132 (452)
                      +|++|+|++||++++++|||++|++|+++++||+|||||+||++|++   .||++|+.|+++|++||++|+++|+|||++
T Consensus         1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~   80 (395)
T d1io1a_           1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK   80 (395)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf             97138899998999999999999999999999999999999850578999999999999999999999999737028802


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             13566654322334
Q gi|254780531|r  133 WLRTDLGSSTASIA  146 (452)
Q Consensus       133 l~~g~~~~~~~~~~  146 (452)
                      ||+|+.... ++.+
T Consensus        81 Ll~Gs~~~~-~~~g   93 (395)
T d1io1a_          81 VLAQDNTLT-IQVG   93 (395)
T ss_dssp             TTTSCEEEE-EECS
T ss_pred             CCCCCCCEE-EEEC
T ss_conf             235567258-9724

SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Phase 1 flagellin
superfamily: Phase 1 flagellin
family: Phase 1 flagellin
domain: Phase 1 flagellin
species: Salmonella typhimurium [TaxId: 90371]