RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
         (452 letters)



>gnl|CDD|105853 PRK12687, PRK12687, flagellin; Reviewed.
          Length = 311

 Score =  127 bits (320), Expect = 5e-30
 Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 8/224 (3%)

Query: 1   MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGAL 60
           M+S+LTN SAM+A Q LR+++ +L   Q+R+S+G RV+ A+DN+AYWSIA  M+SDN AL
Sbjct: 1   MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEAL 60

Query: 61  SAVSDAIGLGSSKVDIAKAGMSKAI----DVMSTIKNKITAGVERGTDSKSIQSEITQLQ 116
           SAVSDA+GLG++ VD     ++  +      ++ +K K+ A  E G D   IQSEIT +Q
Sbjct: 61  SAVSDALGLGAATVDTMYTALTSVVGDSKSGLTALKAKLVAAREPGIDRTKIQSEITAIQ 120

Query: 117 SQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVL 176
           + L++ A  + FNGENWL  D   S+ +  KSV+ SF R   G V I TID  +    + 
Sbjct: 121 NDLKNTAGLAVFNGENWLSVDSSPSSYNATKSVVSSFTR-VGGTVAIKTIDVNIAKLALY 179

Query: 177 LDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTK 220
               T+G+   G+LD+   +      +  ID+ +   S T  TK
Sbjct: 180 ---DTNGSSTTGILDKTVTVGTATASVSSIDIHLLTDSATDLTK 220



 Score = 93.2 bits (231), Expect = 1e-19
 Identities = 49/115 (42%), Positives = 76/115 (66%), Gaps = 2/115 (1%)

Query: 337 SGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFI 396
           +  S+ +++I  H  TD+  +   ++  +  +D  +   T A+  +G+  +RI    +F+
Sbjct: 199 ATASVSSIDI--HLLTDSATDLTKLDGYIGIVDQALGSVTQASADLGATKTRIDSNSNFV 256

Query: 397 KLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451
           K +RDA+++GVG+LVDADM +ESTRL ALQTQQQL +QALSI N  +  ILSLF+
Sbjct: 257 KSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311


>gnl|CDD|184167 PRK13588, PRK13588, flagellin B; Provisional.
          Length = 514

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 11/138 (7%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
           I TN +A++A       N +L    +++SSGLR++ AAD+A+  +IA  ++S +  L   
Sbjct: 5   INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQA 64

Query: 64  ----SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDS---KSIQSEITQLQ 116
               +DAIG+    V  A   M + I ++ TIK K     + G      +++QS+I +L 
Sbjct: 65  IRNANDAIGM----VQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLL 120

Query: 117 SQLRDIARGSSFNGENWL 134
            +L +IA  +SFNG+  L
Sbjct: 121 EELDNIANTTSFNGQQML 138


>gnl|CDD|183609 PRK12584, PRK12584, flagellin A; Reviewed.
          Length = 510

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 18/176 (10%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGAL--- 60
           + TN +A++A  +       L+   +++SSGLR++ AAD+A+  +IA  ++S   +L   
Sbjct: 5   VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQA 64

Query: 61  -SAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQ 116
            +  +D +G+    + +A   M + + ++ TIK K T   + G      K+IQS+I +L 
Sbjct: 65  IANTNDGMGI----IQVADKAMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLI 120

Query: 117 SQLRDIARGSSFNGENWL-------RTDLGSSTASIAKSVIGSFIRDDNGKVQITT 165
             L +I   +++NG+  L          +G+ +    K+ IGS   D  G+V+I T
Sbjct: 121 QGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRIAT 176



 Score = 27.6 bits (61), Expect = 8.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 360 AMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399
           AM+E +  +DT    AT AA    +  SR  +Q D ++L+
Sbjct: 81  AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLI 120


>gnl|CDD|169431 PRK08411, PRK08411, flagellin; Reviewed.
          Length = 572

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 18/163 (11%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNG----A 59
           I TN +A++A         +L+    R+SSGLR++ AAD+A+  +IA  ++S       A
Sbjct: 5   INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQA 64

Query: 60  LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS---IQSEITQLQ 116
           +S  +DA+G+    +  A   M + + ++ TIK K T   + G   K+   +Q++I +L 
Sbjct: 65  ISNGNDALGI----LQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLM 120

Query: 117 SQLRDIARGSSFNGENWLRTD-------LGSSTASIAKSVIGS 152
            +L +IA  +SFNG+  L  +       +G+S+    K+ IG+
Sbjct: 121 EELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKATIGA 163



 Score = 28.8 bits (64), Expect = 2.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 360 AMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRD 401
           AM+E +  +DT    AT AA    S+ +R  LQ D  +LM +
Sbjct: 81  AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEE 122


>gnl|CDD|171737 PRK12807, PRK12807, flagellin; Provisional.
          Length = 287

 Score = 57.5 bits (138), Expect = 7e-09
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
           I TN ++M   + +R     + V  +R+SSG R++ AAD+AA  +IA  M++    L   
Sbjct: 3   INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKA 62

Query: 64  SDAIGLGSSKVDIAKAGMSKAIDV---MSTIKNKITAGVERGTDSKSIQSEITQLQSQLR 120
           S     G S +  A++ M+   ++   M  I  + + G     +  ++Q E  +LQ Q+ 
Sbjct: 63  SQNTQDGMSLIRTAESAMNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQID 122

Query: 121 DIARGSSFNGENWLRTDLGSSTASIAKS 148
            IA+ + FN +N L      +  S + S
Sbjct: 123 YIAKNTEFNDKNLLAGTGAVTIGSTSIS 150


>gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional.
          Length = 576

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 18/163 (11%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
           I TN  A++A       +  L+    R+SSGLR++ AAD+A+  +IA  ++S    L   
Sbjct: 5   INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQA 64

Query: 64  ----SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS---IQSEITQLQ 116
               +DAIG+    +  A   M + + ++ TIK K T   + G   K+   +Q++I +L 
Sbjct: 65  INNGNDAIGI----LQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLM 120

Query: 117 SQLRDIARGSSFNGENWLRTD-------LGSSTASIAKSVIGS 152
            +L +IA  +SFNG+  L  +       +G+S+    K+ IG+
Sbjct: 121 EELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKATIGA 163


>gnl|CDD|181570 PRK08869, PRK08869, flagellin; Reviewed.
          Length = 376

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 1   MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSD-NGA 59
             ++ TN SAM+A + L      L    +R+SSG R++ A D+AA   I+  + +   G 
Sbjct: 1   AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGL 60

Query: 60  LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQ 116
             AV +A   G S    A+  M++  +++  +++   +   G    +D +++Q E+T L 
Sbjct: 61  DVAVRNA-NDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALN 119

Query: 117 SQLRDIARGSSFNGENWLRTDLGSST 142
            +L  IA  +SF G   L    G+ +
Sbjct: 120 DELNRIAETTSFGGTKLLNGSFGTKS 145


>gnl|CDD|183761 PRK12806, PRK12806, flagellin; Provisional.
          Length = 475

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)

Query: 6   TNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSD 65
           TN ++++A + L      ++    R+SSGLR++ A D+AA  +I+Q M +    ++    
Sbjct: 7   TNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVR 66

Query: 66  AIGLGSSKVDIAKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQSQLRDI 122
               G S   +A+  M +  +++  ++    +        +D  SIQSEI+QL+S+L  I
Sbjct: 67  NANDGISLAQVAEGAMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERI 126

Query: 123 ARGSSFNGENWL 134
           A+ + FNG+  L
Sbjct: 127 AQNTEFNGQRIL 138


>gnl|CDD|171738 PRK12808, PRK12808, flagellin; Provisional.
          Length = 476

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
           I TN ++M   + +R     +    DR+SSG R+++A+D+AA  +IA  M++    L   
Sbjct: 3   INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVA 62

Query: 64  SDAIGLGSSKVDIAKAGMSKAIDV---MSTIKNKITAGVERGTDSKSIQSEITQLQSQLR 120
           ++    G S +  A + M+   ++   M  I N+   G     +  ++Q E  +LQ Q+ 
Sbjct: 63  ANNTQDGMSLIRTADSAMNSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQIT 122

Query: 121 DIARGSSFNGENWLRTD 137
            IA  + FN +N L ++
Sbjct: 123 YIADNTQFNDKNLLNSN 139


>gnl|CDD|162917 TIGR02550, flagell_flgL, flagellar hook-associated protein 3.  This
           protein family consists of flagellar hook-associated
           proteins designated FlgL (or HAP3) encoded in bacterial
           flagellar operons. A N-terminal region of about 150
           residues and a C-terminal region of about 85 residues
           are conserved. Members show considerable length
           heterogeneity between these two well-conserved terminal
           regions; members of the family vary between 287 to over
           500 residues in length. This model distinguishes FlgL
           from the flagellin gene product FliC.
          Length = 306

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 9   SAMSASQKLRDINYN---LEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSD 65
           + M  +  L  I  N   L  +Q ++SSG R++  +D+    + A  +  +   L     
Sbjct: 4   TNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQK 63

Query: 66  AIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQLRDI 122
            I    + +   +  +S   DV+   +        G     D K+I  EI QL  QL ++
Sbjct: 64  NIDDAKNWLSQTETALSSVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNL 123

Query: 123 ARGSSFNG 130
           A     NG
Sbjct: 124 ANTKDGNG 131



 Score = 33.5 bits (77), Expect = 0.11
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 20/188 (10%)

Query: 263 SGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTES 322
           SGT     P  +         N D   R     S  S P         +   +      +
Sbjct: 136 SGTKTDTPP-FSEDEGGEVTYNGDGGQRKVQVASNRSMPVGHPGDKVFMSIPNNDKSVFN 194

Query: 323 TTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKI 382
           T  +    L    D+  S                   A+   ++ +D  +    +A  ++
Sbjct: 195 TGDNLIDALKSLEDALSSGDAQA--------------ALSASLNELDKALDNVLSARAEV 240

Query: 383 GSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNS 442
           G+  +R+   E+ +   +  + + +  L D D+A   + L+  QT  Q A++  + +   
Sbjct: 241 GARLNRLENLENRLSEQKLQLTEVLSDLEDVDLAEAISDLNMQQTALQAALKTFAKIQQ- 299

Query: 443 TARILSLF 450
               LSLF
Sbjct: 300 ----LSLF 303


>gnl|CDD|139237 PRK12802, PRK12802, flagellin; Provisional.
          Length = 282

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 1   MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSD-NGA 59
             ++ TN ++++  + L   +  L     R+SSGL+++ A D+AA   IA    S   G 
Sbjct: 2   ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQ 61

Query: 60  LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS------IQSEIT 113
             A+ +A   G S    A+  + ++ +++  ++      V+   DS        +  E T
Sbjct: 62  TQAIKNA-NDGISIAQTAEGALQESTNILQRMR---ELAVQSRNDSNDSTDRAALNKEFT 117

Query: 114 QLQSQLRDIARGSSFNGENWLRTDLGSST 142
            +  ++  IA  ++ NG+N L    G+ T
Sbjct: 118 TMLDEITRIATSTTLNGKNLLDGSAGTMT 146



 Score = 28.7 bits (64), Expect = 2.8
 Identities = 19/85 (22%), Positives = 40/85 (47%)

Query: 365 VSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSA 424
           ++ ID  ++        +G+  +R+      ++ + +      GR+ D D A+E+ +L+ 
Sbjct: 196 ITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTK 255

Query: 425 LQTQQQLAVQALSIVNNSTARILSL 449
            QT QQ +   L+  N   + +L L
Sbjct: 256 QQTLQQASTSVLAQANQLPSAVLKL 280


>gnl|CDD|183759 PRK12804, PRK12804, flagellin; Provisional.
          Length = 301

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 29  DRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVM 88
           +++SSGL+++ A D+AA  +I++ M+     L   S     G S +  A+  +++   ++
Sbjct: 28  EKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTETHSIL 87

Query: 89  STIKNKI----TAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL 134
             ++  +      G + GTD  +IQ EI  L  ++  I+  + FNG+  L
Sbjct: 88  QRVRELVVQAGNTGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLL 137



 Score = 30.7 bits (69), Expect = 0.77
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATA 377
           ++  S      KD    + +G S+  +++T+ AN  A       ++ +  +D  IK  + 
Sbjct: 169 IEAMSADALGVKDTDGTLVTGKSVSDIDVTKFANA-AAAADGGFDDQLKIVDGAIKQVSD 227

Query: 378 AAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALS 437
              K+G++ +R+    + +    + +     R+ D DMA E +  +      Q +   L+
Sbjct: 228 QRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLA 287

Query: 438 IVNNSTARILSLFR 451
             N     +L L R
Sbjct: 288 QANQQPQNVLQLLR 301


>gnl|CDD|171664 PRK12688, PRK12688, flagellin; Reviewed.
          Length = 751

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 379 AGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSI 438
           A  +GS  S + +++DF K + + ++ G   L  AD   E+    AL T+Q +AV ALS+
Sbjct: 679 ASALGSNLSIVQVRQDFSKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSL 738

Query: 439 VNNSTARILSLFR 451
            N S   +L L R
Sbjct: 739 ANQSQQSVLQLLR 751


>gnl|CDD|173171 PRK14708, PRK14708, flagellin; Provisional.
          Length = 888

 Score = 38.0 bits (88), Expect = 0.005
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 379 AGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSI 438
           A   GS  S +  ++DF K + + ++ G   L  AD   E+    AL T+Q +AV ALS+
Sbjct: 816 ASAFGSNLSIVQARQDFSKSLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSL 875

Query: 439 VNNSTARILSLFR 451
            N S   +L L R
Sbjct: 876 ANQSQQGVLQLLR 888


>gnl|CDD|183758 PRK12803, PRK12803, flagellin; Provisional.
          Length = 335

 Score = 36.7 bits (84), Expect = 0.013
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 7   NHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDA 66
           N SA++AS+       NL   Q+++SSG R++ A+D+AA   +A  + +    LS  S  
Sbjct: 6   NTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRN 65

Query: 67  IGLGSSKVDIAKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQSQLRDIA 123
                + +   +  +++   V+  +K    +   G     D  SIQ EI QL  ++  IA
Sbjct: 66  TSKAINFIQTTEGNLNEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIA 125

Query: 124 RGSSFN 129
             + +N
Sbjct: 126 DQAQYN 131


>gnl|CDD|183760 PRK12805, PRK12805, flagellin; Provisional.
          Length = 287

 Score = 34.5 bits (78), Expect = 0.058
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 6   TNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSD 65
           TN  ++   + LR  N  +   Q+R++SG R++ + D+AA  ++   M   +  L A S 
Sbjct: 5   TNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASK 64

Query: 66  AIGLGS---SKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDI 122
              +G       D A + MS  +  M  +  + + G     D K   +E   L  +L  +
Sbjct: 65  NSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHV 124

Query: 123 ARGSSFN 129
           A  +++N
Sbjct: 125 ADTTNYN 131


>gnl|CDD|180648 PRK06663, PRK06663, flagellar hook-associated protein FlgL;
           Validated.
          Length = 419

 Score = 33.5 bits (77), Expect = 0.12
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 17  LRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDI 76
           LR     +  +Q+++S+G R+    D+    + +   KS    L      I  G  ++  
Sbjct: 17  LRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRY 76

Query: 77  AKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENW 133
           A+  +    +++   +    +   G  +  D K I  EI +L   L DIA     +G   
Sbjct: 77  AEGYLQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGY-- 134

Query: 134 LRTDLGSSTASIAKSVIGSFIR---DDNGKVQITTIDY 168
                G+   +    VI   I+    D G  QI  ++Y
Sbjct: 135 -SIFSGTKIDTEPFEVIRGNIKGLQGDAGSNQIIGVEY 171


>gnl|CDD|150873 pfam10267, Tmemb_cc2, Predicted transmembrane and coiled-coil 2
           protein.  This family of transmembrane coiled-coil
           containing proteins is conserved from worms to humans.
           Its function is unknown.
          Length = 387

 Score = 31.7 bits (72), Expect = 0.38
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 415 MASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG 452
           M S  TR+S L+ QQQ  VQ L  + NS AR+L L + 
Sbjct: 300 MESCQTRISKLEQQQQQVVQ-LEGMENSNARVL-LGKF 335


>gnl|CDD|180711 PRK06819, PRK06819, flagellin; Validated.
          Length = 376

 Score = 31.3 bits (71), Expect = 0.51
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 30  RVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMS 89
           R+SSGLR++ A D+AA  +IA    S+   L+  +     G S     +  +++  + + 
Sbjct: 31  RLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNEINNNLQ 90

Query: 90  TIKN---KITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTD 137
            ++    +   G    +D  SIQ EI+Q  +++  ++  + FNG   L  D
Sbjct: 91  RVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED 141


>gnl|CDD|181087 PRK07701, flgL, flagellar hook-associated protein FlgL; Validated.
          Length = 298

 Score = 31.1 bits (71), Expect = 0.53
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 11  MSASQKLRDINYNLEVV---QDRVSSGLRVSDAADN--AAYWSIA--QIMKSDNGALSAV 63
           M A+  LR+IN NLE +   Q+++S+G +++  +D+   A  S+     +          
Sbjct: 7   MLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNA 66

Query: 64  SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGT----DSKSIQSEITQLQSQL 119
           SDA     S ++  ++ + +A D++   +         GT    D ++I  EI QL+ QL
Sbjct: 67  SDAK----SWLENTESALDQATDILQRARELAVQA-ANGTNTQTDRQAIAQEIEQLKEQL 121

Query: 120 RDIARGSSFNG 130
             IA  + +NG
Sbjct: 122 IQIA-NTQYNG 131


>gnl|CDD|178498 PLN02910, PLN02910, polygalacturonate
           4-alpha-galacturonosyltransferase.
          Length = 657

 Score = 30.7 bits (69), Expect = 0.86
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 200 PQVLKDID-VSVY-DASGTISTKKFKLATTSGAWL--KAANATFDQAKG 244
               KDI+ V+ Y D SG I   + K+   S +W+    A+   DQ KG
Sbjct: 42  DPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKG 90


>gnl|CDD|168344 PRK06008, flgL, flagellar hook-associated protein FlgL; Validated.
          Length = 348

 Score = 30.7 bits (70), Expect = 0.88
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 376 TAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLA--- 432
           T    ++G   SR+      +      +   +  L   D    STR++ALQTQ + +   
Sbjct: 276 TTEQSQLGLAQSRVTKANTRLDAQIKLLNGQILDLEGVDPYEASTRVNALQTQLETSYSL 335

Query: 433 ---VQALSIVN 440
              +Q LS+VN
Sbjct: 336 TSQLQQLSLVN 346


>gnl|CDD|178563 PLN02982, PLN02982, galactinol-raffinose
           galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
           compounds.
          Length = 865

 Score = 30.2 bits (68), Expect = 1.2
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 67  IGLGSSKVDIAKAGM--SKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIAR 124
           +G      D  K  M   KAI+     K +  A     TD     ++I QL+ +L  +  
Sbjct: 310 LGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAM-- 367

Query: 125 GSSFNGENWLRTDLGSSTASIAKSVIG--SFIRD 156
              F+GE    +    S+ S   S  G  +F RD
Sbjct: 368 ---FDGEEKSVSSESESSGSCKVSGSGMKAFTRD 398


>gnl|CDD|184365 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
          Length = 472

 Score = 30.1 bits (68), Expect = 1.3
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 246 ATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIW---VRATTKNSITSDPG 302
           A +P+  P  P AP T     G+        A  IRM    ++   V+A T   + + P 
Sbjct: 104 APLPIARPDNPDAPPTPPANPGNPGQVNDDEAQRIRMAKLQMFEEAVKAKTTVRVDA-PR 162

Query: 303 YTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHAN-TDAYNEKLA 360
              S             T    L     + ++ID+          R  + T AY  +LA
Sbjct: 163 SNGSAPGGPSTYTGTPQTRDEMLARIAAVRQQIDA---------QRSNDPTAAYQARLA 212


>gnl|CDD|181571 PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed.
          Length = 404

 Score = 29.1 bits (66), Expect = 2.4
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 9   SAMSASQKLRDINYN---LEVVQDRVSSGLRVSDAADN---AAYWSIAQIMKSDNGALSA 62
           +A    Q +  +      L  +Q ++SSG ++   +D+   AA    A  +   +  L  
Sbjct: 5   TAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQ---AVNLSQQSALLDQ 61

Query: 63  VSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGT----DSKSIQSEITQLQSQ 118
            +  I L  +++   ++ +    D++   +  +      G+    D ++I +E+  L+ Q
Sbjct: 62  YTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAGN-GSLSDSDRQAIATELQGLRDQ 120

Query: 119 LRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQ 162
           L ++A     +G N+L     S T          F  D +G V 
Sbjct: 121 LLNLANSKDGSG-NYLFAGTQSGTQ--------PFAFDASGNVV 155


>gnl|CDD|171679 PRK12717, flgL, flagellar hook-associated protein FlgL;
           Provisional.
          Length = 523

 Score = 28.9 bits (65), Expect = 2.5
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 21  NY-NLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKA 79
           NY NL   Q++ SSG+R+  AAD+    +    ++     L   S  I    + +   ++
Sbjct: 19  NYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEES 78

Query: 80  GMSKAIDVMSTIKN-KITAGVERGTDS--KSIQSEITQLQSQL 119
            ++   D +   +   ++AG    TD+  K+I SE+ Q+++QL
Sbjct: 79  TLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQL 121


>gnl|CDD|184372 PRK13888, PRK13888, conjugal transfer protein TrbN; Provisional.
          Length = 206

 Score = 28.7 bits (64), Expect = 3.1
 Identities = 17/59 (28%), Positives = 22/59 (37%)

Query: 223 KLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIR 281
           + A+    WL+A   T D  K  AT   P   A  A   T     + +P  AA A    
Sbjct: 129 RKASKWADWLEARFVTLDVTKAGATPSTPSQPATVAQRATPAARPAPAPKQAAPAAAAA 187


>gnl|CDD|180444 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
          Length = 567

 Score = 28.1 bits (63), Expect = 4.7
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 246 ATIPVPLPA----APAAPNTTSGTSG 267
            T PVPLP     A AA N T GT+G
Sbjct: 197 CTAPVPLPPPALDALAALNYTGGTTG 222


>gnl|CDD|184739 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
           complex aNOP56 subunit; Provisional.
          Length = 414

 Score = 28.0 bits (63), Expect = 4.9
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 143 ASIAKSVIGSFIRDDNGKVQITTIDYYLDPE 173
             IA+ VIG+F  D+NGK+    ID   +PE
Sbjct: 2   IYIAEHVIGAFAFDENGKL----IDKIFNPE 28


>gnl|CDD|184473 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional.
          Length = 467

 Score = 27.8 bits (62), Expect = 5.4
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 353 DAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVD 412
           DA N+   +  +   I+   K      G I    S +H  E +++  R+ V+ GV  +  
Sbjct: 116 DALND---IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI 172

Query: 413 ADMA 416
            DMA
Sbjct: 173 KDMA 176


>gnl|CDD|152228 pfam11792, Baculo_LEF5_C, Baculoviridae late expression factor 5
           C-terminal domain.  This C-terminal domain is likely to
           be a zinc-binding domain.
          Length = 43

 Score = 28.0 bits (63), Expect = 5.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 343 TLNITRHANTDAYNEKLAMEEMVSFIDTQIKC 374
           TL   +H       +  A +E VSFI   +KC
Sbjct: 9   TLKQCKHEFVTVEKQLRAGDEAVSFIKYCVKC 40


>gnl|CDD|177668 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
           Provisional.
          Length = 353

 Score = 27.9 bits (62), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 248 IPVPLPAAPAAPNTTSGTSGSKSPSVAA 275
           +P+PLP   ++ +++S +S S S   AA
Sbjct: 43  VPLPLPPPSSSSSSSSSSSASGSAPSAA 70


>gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional.
          Length = 499

 Score = 27.4 bits (61), Expect = 7.8
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 353 DAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVD 412
           DA N+   +E  +  +    K    A G I    S IH  E F++  +  ++ G   +  
Sbjct: 118 DALNDPRNLEHAMKAVK---KVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI 174

Query: 413 ADMAS 417
            DMA+
Sbjct: 175 KDMAA 179


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.311    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,725,965
Number of extensions: 416339
Number of successful extensions: 929
Number of sequences better than 10.0: 1
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 76
Length of query: 452
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,898,497
Effective search space: 1383966435
Effective search space used: 1383966435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.5 bits)