RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >gnl|CDD|105853 PRK12687, PRK12687, flagellin; Reviewed. Length = 311 Score = 127 bits (320), Expect = 5e-30 Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 8/224 (3%) Query: 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGAL 60 M+S+LTN SAM+A Q LR+++ +L Q+R+S+G RV+ A+DN+AYWSIA M+SDN AL Sbjct: 1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEAL 60 Query: 61 SAVSDAIGLGSSKVDIAKAGMSKAI----DVMSTIKNKITAGVERGTDSKSIQSEITQLQ 116 SAVSDA+GLG++ VD ++ + ++ +K K+ A E G D IQSEIT +Q Sbjct: 61 SAVSDALGLGAATVDTMYTALTSVVGDSKSGLTALKAKLVAAREPGIDRTKIQSEITAIQ 120 Query: 117 SQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVL 176 + L++ A + FNGENWL D S+ + KSV+ SF R G V I TID + + Sbjct: 121 NDLKNTAGLAVFNGENWLSVDSSPSSYNATKSVVSSFTR-VGGTVAIKTIDVNIAKLALY 179 Query: 177 LDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTK 220 T+G+ G+LD+ + + ID+ + S T TK Sbjct: 180 ---DTNGSSTTGILDKTVTVGTATASVSSIDIHLLTDSATDLTK 220 Score = 93.2 bits (231), Expect = 1e-19 Identities = 49/115 (42%), Positives = 76/115 (66%), Gaps = 2/115 (1%) Query: 337 SGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFI 396 + S+ +++I H TD+ + ++ + +D + T A+ +G+ +RI +F+ Sbjct: 199 ATASVSSIDI--HLLTDSATDLTKLDGYIGIVDQALGSVTQASADLGATKTRIDSNSNFV 256 Query: 397 KLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 K +RDA+++GVG+LVDADM +ESTRL ALQTQQQL +QALSI N + ILSLF+ Sbjct: 257 KSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311 >gnl|CDD|184167 PRK13588, PRK13588, flagellin B; Provisional. Length = 514 Score = 62.6 bits (152), Expect = 2e-10 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 11/138 (7%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63 I TN +A++A N +L +++SSGLR++ AAD+A+ +IA ++S + L Sbjct: 5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQA 64 Query: 64 ----SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDS---KSIQSEITQLQ 116 +DAIG+ V A M + I ++ TIK K + G +++QS+I +L Sbjct: 65 IRNANDAIGM----VQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLL 120 Query: 117 SQLRDIARGSSFNGENWL 134 +L +IA +SFNG+ L Sbjct: 121 EELDNIANTTSFNGQQML 138 >gnl|CDD|183609 PRK12584, PRK12584, flagellin A; Reviewed. Length = 510 Score = 61.8 bits (150), Expect = 3e-10 Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 18/176 (10%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGAL--- 60 + TN +A++A + L+ +++SSGLR++ AAD+A+ +IA ++S +L Sbjct: 5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQA 64 Query: 61 -SAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQ 116 + +D +G+ + +A M + + ++ TIK K T + G K+IQS+I +L Sbjct: 65 IANTNDGMGI----IQVADKAMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLI 120 Query: 117 SQLRDIARGSSFNGENWL-------RTDLGSSTASIAKSVIGSFIRDDNGKVQITT 165 L +I +++NG+ L +G+ + K+ IGS D G+V+I T Sbjct: 121 QGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRIAT 176 Score = 27.6 bits (61), Expect = 8.0 Identities = 14/40 (35%), Positives = 22/40 (55%) Query: 360 AMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 AM+E + +DT AT AA + SR +Q D ++L+ Sbjct: 81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLI 120 >gnl|CDD|169431 PRK08411, PRK08411, flagellin; Reviewed. Length = 572 Score = 57.7 bits (139), Expect = 6e-09 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 18/163 (11%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNG----A 59 I TN +A++A +L+ R+SSGLR++ AAD+A+ +IA ++S A Sbjct: 5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQA 64 Query: 60 LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS---IQSEITQLQ 116 +S +DA+G+ + A M + + ++ TIK K T + G K+ +Q++I +L Sbjct: 65 ISNGNDALGI----LQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLM 120 Query: 117 SQLRDIARGSSFNGENWLRTD-------LGSSTASIAKSVIGS 152 +L +IA +SFNG+ L + +G+S+ K+ IG+ Sbjct: 121 EELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKATIGA 163 Score = 28.8 bits (64), Expect = 2.9 Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 360 AMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRD 401 AM+E + +DT AT AA S+ +R LQ D +LM + Sbjct: 81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEE 122 >gnl|CDD|171737 PRK12807, PRK12807, flagellin; Provisional. Length = 287 Score = 57.5 bits (138), Expect = 7e-09 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63 I TN ++M + +R + V +R+SSG R++ AAD+AA +IA M++ L Sbjct: 3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKA 62 Query: 64 SDAIGLGSSKVDIAKAGMSKAIDV---MSTIKNKITAGVERGTDSKSIQSEITQLQSQLR 120 S G S + A++ M+ ++ M I + + G + ++Q E +LQ Q+ Sbjct: 63 SQNTQDGMSLIRTAESAMNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQID 122 Query: 121 DIARGSSFNGENWLRTDLGSSTASIAKS 148 IA+ + FN +N L + S + S Sbjct: 123 YIAKNTEFNDKNLLAGTGAVTIGSTSIS 150 >gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional. Length = 576 Score = 53.5 bits (128), Expect = 1e-07 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 18/163 (11%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63 I TN A++A + L+ R+SSGLR++ AAD+A+ +IA ++S L Sbjct: 5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQA 64 Query: 64 ----SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS---IQSEITQLQ 116 +DAIG+ + A M + + ++ TIK K T + G K+ +Q++I +L Sbjct: 65 INNGNDAIGI----LQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLM 120 Query: 117 SQLRDIARGSSFNGENWLRTD-------LGSSTASIAKSVIGS 152 +L +IA +SFNG+ L + +G+S+ K+ IG+ Sbjct: 121 EELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKATIGA 163 >gnl|CDD|181570 PRK08869, PRK08869, flagellin; Reviewed. Length = 376 Score = 52.6 bits (127), Expect = 2e-07 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 5/146 (3%) Query: 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSD-NGA 59 ++ TN SAM+A + L L +R+SSG R++ A D+AA I+ + + G Sbjct: 1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGL 60 Query: 60 LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQ 116 AV +A G S A+ M++ +++ +++ + G +D +++Q E+T L Sbjct: 61 DVAVRNA-NDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALN 119 Query: 117 SQLRDIARGSSFNGENWLRTDLGSST 142 +L IA +SF G L G+ + Sbjct: 120 DELNRIAETTSFGGTKLLNGSFGTKS 145 >gnl|CDD|183761 PRK12806, PRK12806, flagellin; Provisional. Length = 475 Score = 47.4 bits (112), Expect = 7e-06 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%) Query: 6 TNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSD 65 TN ++++A + L ++ R+SSGLR++ A D+AA +I+Q M + ++ Sbjct: 7 TNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVR 66 Query: 66 AIGLGSSKVDIAKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQSQLRDI 122 G S +A+ M + +++ ++ + +D SIQSEI+QL+S+L I Sbjct: 67 NANDGISLAQVAEGAMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERI 126 Query: 123 ARGSSFNGENWL 134 A+ + FNG+ L Sbjct: 127 AQNTEFNGQRIL 138 >gnl|CDD|171738 PRK12808, PRK12808, flagellin; Provisional. Length = 476 Score = 46.9 bits (111), Expect = 1e-05 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63 I TN ++M + +R + DR+SSG R+++A+D+AA +IA M++ L Sbjct: 3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVA 62 Query: 64 SDAIGLGSSKVDIAKAGMSKAIDV---MSTIKNKITAGVERGTDSKSIQSEITQLQSQLR 120 ++ G S + A + M+ ++ M I N+ G + ++Q E +LQ Q+ Sbjct: 63 ANNTQDGMSLIRTADSAMNSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQIT 122 Query: 121 DIARGSSFNGENWLRTD 137 IA + FN +N L ++ Sbjct: 123 YIADNTQFNDKNLLNSN 139 >gnl|CDD|162917 TIGR02550, flagell_flgL, flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. Length = 306 Score = 43.5 bits (103), Expect = 1e-04 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 9 SAMSASQKLRDINYN---LEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSD 65 + M + L I N L +Q ++SSG R++ +D+ + A + + L Sbjct: 4 TNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQK 63 Query: 66 AIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQLRDI 122 I + + + +S DV+ + G D K+I EI QL QL ++ Sbjct: 64 NIDDAKNWLSQTETALSSVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNL 123 Query: 123 ARGSSFNG 130 A NG Sbjct: 124 ANTKDGNG 131 Score = 33.5 bits (77), Expect = 0.11 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 20/188 (10%) Query: 263 SGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTES 322 SGT P + N D R S S P + + + Sbjct: 136 SGTKTDTPP-FSEDEGGEVTYNGDGGQRKVQVASNRSMPVGHPGDKVFMSIPNNDKSVFN 194 Query: 323 TTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKI 382 T + L D+ S A+ ++ +D + +A ++ Sbjct: 195 TGDNLIDALKSLEDALSSGDAQA--------------ALSASLNELDKALDNVLSARAEV 240 Query: 383 GSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNS 442 G+ +R+ E+ + + + + + L D D+A + L+ QT Q A++ + + Sbjct: 241 GARLNRLENLENRLSEQKLQLTEVLSDLEDVDLAEAISDLNMQQTALQAALKTFAKIQQ- 299 Query: 443 TARILSLF 450 LSLF Sbjct: 300 ----LSLF 303 >gnl|CDD|139237 PRK12802, PRK12802, flagellin; Provisional. Length = 282 Score = 42.6 bits (100), Expect = 2e-04 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 11/149 (7%) Query: 1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSD-NGA 59 ++ TN ++++ + L + L R+SSGL+++ A D+AA IA S G Sbjct: 2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQ 61 Query: 60 LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKS------IQSEIT 113 A+ +A G S A+ + ++ +++ ++ V+ DS + E T Sbjct: 62 TQAIKNA-NDGISIAQTAEGALQESTNILQRMR---ELAVQSRNDSNDSTDRAALNKEFT 117 Query: 114 QLQSQLRDIARGSSFNGENWLRTDLGSST 142 + ++ IA ++ NG+N L G+ T Sbjct: 118 TMLDEITRIATSTTLNGKNLLDGSAGTMT 146 Score = 28.7 bits (64), Expect = 2.8 Identities = 19/85 (22%), Positives = 40/85 (47%) Query: 365 VSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSA 424 ++ ID ++ +G+ +R+ ++ + + GR+ D D A+E+ +L+ Sbjct: 196 ITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTK 255 Query: 425 LQTQQQLAVQALSIVNNSTARILSL 449 QT QQ + L+ N + +L L Sbjct: 256 QQTLQQASTSVLAQANQLPSAVLKL 280 >gnl|CDD|183759 PRK12804, PRK12804, flagellin; Provisional. Length = 301 Score = 41.9 bits (98), Expect = 3e-04 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Query: 29 DRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVM 88 +++SSGL+++ A D+AA +I++ M+ L S G S + A+ +++ ++ Sbjct: 28 EKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTETHSIL 87 Query: 89 STIKNKI----TAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL 134 ++ + G + GTD +IQ EI L ++ I+ + FNG+ L Sbjct: 88 QRVRELVVQAGNTGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLL 137 Score = 30.7 bits (69), Expect = 0.77 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%) Query: 318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATA 377 ++ S KD + +G S+ +++T+ AN A ++ + +D IK + Sbjct: 169 IEAMSADALGVKDTDGTLVTGKSVSDIDVTKFANA-AAAADGGFDDQLKIVDGAIKQVSD 227 Query: 378 AAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALS 437 K+G++ +R+ + + + + R+ D DMA E + + Q + L+ Sbjct: 228 QRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLA 287 Query: 438 IVNNSTARILSLFR 451 N +L L R Sbjct: 288 QANQQPQNVLQLLR 301 >gnl|CDD|171664 PRK12688, PRK12688, flagellin; Reviewed. Length = 751 Score = 38.7 bits (90), Expect = 0.003 Identities = 26/73 (35%), Positives = 40/73 (54%) Query: 379 AGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSI 438 A +GS S + +++DF K + + ++ G L AD E+ AL T+Q +AV ALS+ Sbjct: 679 ASALGSNLSIVQVRQDFSKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSL 738 Query: 439 VNNSTARILSLFR 451 N S +L L R Sbjct: 739 ANQSQQSVLQLLR 751 >gnl|CDD|173171 PRK14708, PRK14708, flagellin; Provisional. Length = 888 Score = 38.0 bits (88), Expect = 0.005 Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 379 AGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSI 438 A GS S + ++DF K + + ++ G L AD E+ AL T+Q +AV ALS+ Sbjct: 816 ASAFGSNLSIVQARQDFSKSLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSL 875 Query: 439 VNNSTARILSLFR 451 N S +L L R Sbjct: 876 ANQSQQGVLQLLR 888 >gnl|CDD|183758 PRK12803, PRK12803, flagellin; Provisional. Length = 335 Score = 36.7 bits (84), Expect = 0.013 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 7 NHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDA 66 N SA++AS+ NL Q+++SSG R++ A+D+AA +A + + LS S Sbjct: 6 NTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRN 65 Query: 67 IGLGSSKVDIAKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQSQLRDIA 123 + + + +++ V+ +K + G D SIQ EI QL ++ IA Sbjct: 66 TSKAINFIQTTEGNLNEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIA 125 Query: 124 RGSSFN 129 + +N Sbjct: 126 DQAQYN 131 >gnl|CDD|183760 PRK12805, PRK12805, flagellin; Provisional. Length = 287 Score = 34.5 bits (78), Expect = 0.058 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 6 TNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSD 65 TN ++ + LR N + Q+R++SG R++ + D+AA ++ M + L A S Sbjct: 5 TNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASK 64 Query: 66 AIGLGS---SKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDI 122 +G D A + MS + M + + + G D K +E L +L + Sbjct: 65 NSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHV 124 Query: 123 ARGSSFN 129 A +++N Sbjct: 125 ADTTNYN 131 >gnl|CDD|180648 PRK06663, PRK06663, flagellar hook-associated protein FlgL; Validated. Length = 419 Score = 33.5 bits (77), Expect = 0.12 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 9/158 (5%) Query: 17 LRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDI 76 LR + +Q+++S+G R+ D+ + + KS L I G ++ Sbjct: 17 LRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRY 76 Query: 77 AKAGMSKAIDVMSTIKN---KITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENW 133 A+ + +++ + + G + D K I EI +L L DIA +G Sbjct: 77 AEGYLQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGY-- 134 Query: 134 LRTDLGSSTASIAKSVIGSFIR---DDNGKVQITTIDY 168 G+ + VI I+ D G QI ++Y Sbjct: 135 -SIFSGTKIDTEPFEVIRGNIKGLQGDAGSNQIIGVEY 171 >gnl|CDD|150873 pfam10267, Tmemb_cc2, Predicted transmembrane and coiled-coil 2 protein. This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown. Length = 387 Score = 31.7 bits (72), Expect = 0.38 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 415 MASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG 452 M S TR+S L+ QQQ VQ L + NS AR+L L + Sbjct: 300 MESCQTRISKLEQQQQQVVQ-LEGMENSNARVL-LGKF 335 >gnl|CDD|180711 PRK06819, PRK06819, flagellin; Validated. Length = 376 Score = 31.3 bits (71), Expect = 0.51 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 30 RVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMS 89 R+SSGLR++ A D+AA +IA S+ L+ + G S + +++ + + Sbjct: 31 RLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNEINNNLQ 90 Query: 90 TIKN---KITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTD 137 ++ + G +D SIQ EI+Q +++ ++ + FNG L D Sbjct: 91 RVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED 141 >gnl|CDD|181087 PRK07701, flgL, flagellar hook-associated protein FlgL; Validated. Length = 298 Score = 31.1 bits (71), Expect = 0.53 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 17/131 (12%) Query: 11 MSASQKLRDINYNLEVV---QDRVSSGLRVSDAADN--AAYWSIA--QIMKSDNGALSAV 63 M A+ LR+IN NLE + Q+++S+G +++ +D+ A S+ + Sbjct: 7 MLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNA 66 Query: 64 SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGT----DSKSIQSEITQLQSQL 119 SDA S ++ ++ + +A D++ + GT D ++I EI QL+ QL Sbjct: 67 SDAK----SWLENTESALDQATDILQRARELAVQA-ANGTNTQTDRQAIAQEIEQLKEQL 121 Query: 120 RDIARGSSFNG 130 IA + +NG Sbjct: 122 IQIA-NTQYNG 131 >gnl|CDD|178498 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase. Length = 657 Score = 30.7 bits (69), Expect = 0.86 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 200 PQVLKDID-VSVY-DASGTISTKKFKLATTSGAWL--KAANATFDQAKG 244 KDI+ V+ Y D SG I + K+ S +W+ A+ DQ KG Sbjct: 42 DPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKG 90 >gnl|CDD|168344 PRK06008, flgL, flagellar hook-associated protein FlgL; Validated. Length = 348 Score = 30.7 bits (70), Expect = 0.88 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 376 TAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLA--- 432 T ++G SR+ + + + L D STR++ALQTQ + + Sbjct: 276 TTEQSQLGLAQSRVTKANTRLDAQIKLLNGQILDLEGVDPYEASTRVNALQTQLETSYSL 335 Query: 433 ---VQALSIVN 440 +Q LS+VN Sbjct: 336 TSQLQQLSLVN 346 >gnl|CDD|178563 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds. Length = 865 Score = 30.2 bits (68), Expect = 1.2 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 9/94 (9%) Query: 67 IGLGSSKVDIAKAGM--SKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIAR 124 +G D K M KAI+ K + A TD ++I QL+ +L + Sbjct: 310 LGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAM-- 367 Query: 125 GSSFNGENWLRTDLGSSTASIAKSVIG--SFIRD 156 F+GE + S+ S S G +F RD Sbjct: 368 ---FDGEEKSVSSESESSGSCKVSGSGMKAFTRD 398 >gnl|CDD|184365 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional. Length = 472 Score = 30.1 bits (68), Expect = 1.3 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 14/119 (11%) Query: 246 ATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIW---VRATTKNSITSDPG 302 A +P+ P P AP T G+ A IRM ++ V+A T + + P Sbjct: 104 APLPIARPDNPDAPPTPPANPGNPGQVNDDEAQRIRMAKLQMFEEAVKAKTTVRVDA-PR 162 Query: 303 YTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHAN-TDAYNEKLA 360 S T L + ++ID+ R + T AY +LA Sbjct: 163 SNGSAPGGPSTYTGTPQTRDEMLARIAAVRQQIDA---------QRSNDPTAAYQARLA 212 >gnl|CDD|181571 PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed. Length = 404 Score = 29.1 bits (66), Expect = 2.4 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%) Query: 9 SAMSASQKLRDINYN---LEVVQDRVSSGLRVSDAADN---AAYWSIAQIMKSDNGALSA 62 +A Q + + L +Q ++SSG ++ +D+ AA A + + L Sbjct: 5 TAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQ---AVNLSQQSALLDQ 61 Query: 63 VSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGT----DSKSIQSEITQLQSQ 118 + I L +++ ++ + D++ + + G+ D ++I +E+ L+ Q Sbjct: 62 YTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAGN-GSLSDSDRQAIATELQGLRDQ 120 Query: 119 LRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQ 162 L ++A +G N+L S T F D +G V Sbjct: 121 LLNLANSKDGSG-NYLFAGTQSGTQ--------PFAFDASGNVV 155 >gnl|CDD|171679 PRK12717, flgL, flagellar hook-associated protein FlgL; Provisional. Length = 523 Score = 28.9 bits (65), Expect = 2.5 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 21 NY-NLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKA 79 NY NL Q++ SSG+R+ AAD+ + ++ L S I + + ++ Sbjct: 19 NYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEES 78 Query: 80 GMSKAIDVMSTIKN-KITAGVERGTDS--KSIQSEITQLQSQL 119 ++ D + + ++AG TD+ K+I SE+ Q+++QL Sbjct: 79 TLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQL 121 >gnl|CDD|184372 PRK13888, PRK13888, conjugal transfer protein TrbN; Provisional. Length = 206 Score = 28.7 bits (64), Expect = 3.1 Identities = 17/59 (28%), Positives = 22/59 (37%) Query: 223 KLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIR 281 + A+ WL+A T D K AT P A A T + +P AA A Sbjct: 129 RKASKWADWLEARFVTLDVTKAGATPSTPSQPATVAQRATPAARPAPAPKQAAPAAAAA 187 >gnl|CDD|180444 PRK06178, PRK06178, acyl-CoA synthetase; Validated. Length = 567 Score = 28.1 bits (63), Expect = 4.7 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Query: 246 ATIPVPLPA----APAAPNTTSGTSG 267 T PVPLP A AA N T GT+G Sbjct: 197 CTAPVPLPPPALDALAALNYTGGTTG 222 >gnl|CDD|184739 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional. Length = 414 Score = 28.0 bits (63), Expect = 4.9 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%) Query: 143 ASIAKSVIGSFIRDDNGKVQITTIDYYLDPE 173 IA+ VIG+F D+NGK+ ID +PE Sbjct: 2 IYIAEHVIGAFAFDENGKL----IDKIFNPE 28 >gnl|CDD|184473 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional. Length = 467 Score = 27.8 bits (62), Expect = 5.4 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 353 DAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVD 412 DA N+ + + I+ K G I S +H E +++ R+ V+ GV + Sbjct: 116 DALND---IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI 172 Query: 413 ADMA 416 DMA Sbjct: 173 KDMA 176 >gnl|CDD|152228 pfam11792, Baculo_LEF5_C, Baculoviridae late expression factor 5 C-terminal domain. This C-terminal domain is likely to be a zinc-binding domain. Length = 43 Score = 28.0 bits (63), Expect = 5.7 Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 343 TLNITRHANTDAYNEKLAMEEMVSFIDTQIKC 374 TL +H + A +E VSFI +KC Sbjct: 9 TLKQCKHEFVTVEKQLRAGDEAVSFIKYCVKC 40 >gnl|CDD|177668 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional. Length = 353 Score = 27.9 bits (62), Expect = 6.4 Identities = 10/28 (35%), Positives = 18/28 (64%) Query: 248 IPVPLPAAPAAPNTTSGTSGSKSPSVAA 275 +P+PLP ++ +++S +S S S AA Sbjct: 43 VPLPLPPPSSSSSSSSSSSASGSAPSAA 70 >gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional. Length = 499 Score = 27.4 bits (61), Expect = 7.8 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 353 DAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVD 412 DA N+ +E + + K A G I S IH E F++ + ++ G + Sbjct: 118 DALNDPRNLEHAMKAVK---KVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI 174 Query: 413 ADMAS 417 DMA+ Sbjct: 175 KDMAA 179 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.311 0.125 0.336 Gapped Lambda K H 0.267 0.0709 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,725,965 Number of extensions: 416339 Number of successful extensions: 929 Number of sequences better than 10.0: 1 Number of HSP's gapped: 907 Number of HSP's successfully gapped: 76 Length of query: 452 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 355 Effective length of database: 3,898,497 Effective search space: 1383966435 Effective search space used: 1383966435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 59 (26.5 bits)