RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
(452 letters)
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron
microscopy, helical reconstruction, structural protein;
4.00A {Salmonella typhimurium} (A:41-169,A:400-454)
Length = 184
Score = 62.2 bits (151), Expect = 1e-10
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 42 DNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---G 98
D+AA +IA ++ L+ S G S + +++ + + ++
Sbjct: 2 DDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS 61
Query: 99 VERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL 134
+D SIQ+EITQ +++ ++ + FNG L
Sbjct: 62 TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVL 97
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 1.90A {Salmonella typhimurium} (A:)
Length = 248
Score = 55.1 bits (131), Expect = 2e-08
Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 3/231 (1%)
Query: 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA--- 97
+D+ S A ++ S + A + KV + ++ +S+ + T + KI
Sbjct: 2 SDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGN 61
Query: 98 GVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD 157
G D S+ +++ ++ QL ++A + NG + +
Sbjct: 62 GTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKS 121
Query: 158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTI 217
+ + + + +S + + + + I G
Sbjct: 122 VTQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNN 181
Query: 218 STKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGS 268
K+ A N+ + A + L + S +
Sbjct: 182 VEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALG 232
Score = 31.6 bits (70), Expect = 0.21
Identities = 9/79 (11%), Positives = 22/79 (27%)
Query: 339 YSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL 398
N + A+++ + + ++G+ S + +
Sbjct: 169 AIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSD 228
Query: 399 MRDAVEKGVGRLVDADMAS 417
+ + LVD D S
Sbjct: 229 RALGQKLQMSNLVDVDWNS 247
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A
{Salmonella typhimurium} (A:1-117,A:348-398)
Length = 168
Score = 54.8 bits (132), Expect = 2e-08
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQ 109
++ L+ S G S + +++ + + ++ +D SIQ
Sbjct: 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQ 60
Query: 110 SEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDY 168
+EITQ +++ ++ + FNG L +T +I +D + I
Sbjct: 61 AEITQRLNEIDRVSGQTQFNGVKVLA---QDNTLTIQ------VGANDGETIDIDLKQI 110
>2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A
{Sphingomonas SP} (A:1-113,A:232-292)
Length = 174
Score = 54.1 bits (130), Expect = 4e-08
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 55 SDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSE 111
+ L+ G S A+ + + + + I+ G TD ++Q+E
Sbjct: 2 AQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAE 61
Query: 112 ITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTID 167
+TQLQS+++ +A +SFNG+ L I + G+ +
Sbjct: 62 VTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQF---------QIGANAGETIGVSKI 108
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone,
FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:)
Length = 55
Score = 34.6 bits (80), Expect = 0.025
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 408 GRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451
+ + D A E T + Q + Q V L+ N +L L R
Sbjct: 12 SIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron
microscopy, helical reconstruction, structural protein;
4.00A {Salmonella typhimurium} (A:1-40,A:455-494)
Length = 80
Score = 33.8 bits (78), Expect = 0.050
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451
D+D A+E + +S Q QQ L+ N +LSL R
Sbjct: 41 DSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 80
Score = 28.0 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDA-ADNAA 45
I TN ++ L L +R+SSGLR++ A +D A
Sbjct: 3 VINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSDYAT 46
>2pff_A Fatty acid synthase subunit alpha,
3-oxoacyl-[acyl-carrier-; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 31.4 bits (71), Expect = 0.23
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 27/85 (31%)
Query: 4 ILTN----HSAMSASQKLRDINY------------------NLEVVQDRVSSGLRVSDAA 41
ILT HS++ + ++ Y LE ++ + D
Sbjct: 6 ILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEE-IPSEDQN 64
Query: 42 DNAAYWSIAQIMKSDNGALSAVSDA 66
+ +I N A S + A
Sbjct: 65 EFLLER-TREI---HNEAESQLRAA 85
>1pov_0 Poliovirus native empty capsid (type 1); picornavirus,
icosahedral virus; HET: MYR SPH; 2.80A {Human poliovirus
1 mahoney} (0:50-340)
Length = 291
Score = 29.9 bits (67), Expect = 0.60
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 1/108 (0%)
Query: 261 TTSGTSG-SKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319
T K+ + S G SD ++ T NS + NS VA Y D
Sbjct: 4 TEPIKDVLIKTAPMLNSPNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRD 63
Query: 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSF 367
+E+ +D + Y++ T++ T+ + + A+ +M F
Sbjct: 64 SEANPVDQPTEPDVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLF 111
>3ele_A Amino transferase; RER070207001803, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MSE PLP; 2.10A
{Eubacterium rectale} (A:16-46,A:303-398)
Length = 127
Score = 28.2 bits (63), Expect = 2.3
Identities = 5/37 (13%), Positives = 8/37 (21%), Gaps = 2/37 (5%)
Query: 122 IARGSSFNGENWLRTDLGSSTASI--AKSVIGSFIRD 156
I F W+R I + +
Sbjct: 88 IVAADGFGCPGWVRISYCVDREXIKHSXPAFEKIYKK 124
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate
polymerase, translocation, single tranded RNA poly(A)
polymerase, RNA protein complex, processivity,
heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} PDB:
3er8_C* 3erc_C* 2ga9_D* 2gaf_D (B:1-120)
Length = 120
Score = 28.3 bits (63), Expect = 2.3
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 89 STIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLR----------TDL 138
+T+ N +E +E L+SQ R+I + + FN + ++ +D+
Sbjct: 8 NTLPNITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDV 67
Query: 139 GSSTASIAKSVIGSFIRDDNGKV--QITTIDYYLDPETVLLDSSTD 182
+S + I ++ F + ++ TI ++ ++VL+ + TD
Sbjct: 68 NTSASEIKDRILSYFSKQTQTYNIGKLFTI---IELQSVLVTTYTD 110
>1igw_A Isocitrate lyase; beta barrel; 2.10A {Escherichia coli} (A:)
Length = 434
Score = 27.2 bits (59), Expect = 4.4
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 1 MTSILTNHSAMSASQKLRDIN-YNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGA 59
++ A A+ D + Y V V AD ++ G
Sbjct: 90 LSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRAD---------QIQWSAGI 140
Query: 60 LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGV 99
+ V A+AG ++ +K I AG
Sbjct: 141 EPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGA 180
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG
fold, iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A* (A:)
Length = 357
Score = 27.0 bits (58), Expect = 4.9
Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 4/57 (7%)
Query: 207 DVSVYDASGT--ISTKKFKLATTSGAWLKAANATFDQAK--GIATIPVPLPAAPAAP 259
V + L + L+ T + + +P P P
Sbjct: 300 GDVVVLDGEQIVAFFRGLTLRSVPRGALRVVLQTTVKKADRQLGFKTMPSPPPPTTT 356
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} (A:1-178)
Length = 178
Score = 26.7 bits (59), Expect = 7.0
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 71 SSKVDIAKAGMSKAIDVMSTIKNKI---TAGVERGTDSKSIQSEITQLQSQLRDIARG 125
+K+D +K + +D ++ + TAG TD ++ +T + S L +++RG
Sbjct: 52 KNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRG 109
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} (A:)
Length = 174
Score = 26.3 bits (58), Expect = 7.3
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 71 SSKVDIAKAGMSKAIDVMSTIKNKI---TAGVERGTDSKSIQSEITQLQSQLRDIARG 125
+K+D +K + +D ++ + TAG TD ++ +T + S L +++RG
Sbjct: 52 KNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRG 109
>3igf_A ALL4481 protein; two-domained protein consisting of the
N-terminal alpha-beta fold and the C-terminal all beta
domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
(A:298-374)
Length = 77
Score = 26.2 bits (58), Expect = 8.9
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 191 DRNHKIKVE-PQVLK-DIDVSVYDASGTISTKKFKLATTSGAWL---KAANATFDQAKGI 245
N ++++ P K + ++ Y T+ + L A F
Sbjct: 7 THNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPALSGRPITGAKFQN--NY 64
Query: 246 ATIPVP 251
I
Sbjct: 65 LIISFL 70
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA,
2'-O-methylation, coiled-coil, RNA-binding, rRNA
processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
(A:1-103)
Length = 103
Score = 26.2 bits (58), Expect = 9.1
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 145 IAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLK 204
+ + VIG+ D+NG + +DY +P L T+ L N K ++
Sbjct: 6 LIEHVIGAVAYDENGNI----VDYITNPRD--LGKITEE------LLNNEKGIPFSATVE 53
Query: 205 DIDVSVYD 212
+
Sbjct: 54 LLKKVNPQ 61
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.311 0.125 0.336
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,958,641
Number of extensions: 124568
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 22
Length of query: 452
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 361
Effective length of database: 1,879,794
Effective search space: 678605634
Effective search space used: 678605634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.4 bits)