Query         gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 325
No_of_seqs    217 out of 1862
Neff          8.0 
Searched_HMMs 33803
Date          Wed Jun  1 16:34:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780532.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2r1f_A Protein YCEG, predicte 100.0 1.8E-43       0  297.5   6.7  100  183-286     1-100 (100)
  2 >2r1f_A Protein YCEG, predicte  99.7 9.9E-17 2.9E-21  126.6   6.9   79  104-182     2-94  (94)
  3 >2r1f_A Protein YCEG, predicte  99.3 1.7E-12 5.1E-17   99.5   4.0   38  287-324     1-38  (40)
  4 >2r1f_A Protein YCEG, predicte  96.3   0.012 3.6E-07   36.6   6.4   67   35-101     3-78  (94)
  5 >1e0g_A Membrane-bound lytic m  57.7     7.3 0.00022   18.9   2.4   43   35-85      2-44  (48)
  6 >1uw4_A UPF3X; nonsense mediat  47.9      11 0.00031   17.8   1.9   41  262-306     6-49  (91)
  7 >3b5q_A Putative sulfatase YID  44.0     3.2 9.5E-05   21.1  -1.2   20  155-174   159-178 (215)
  8 3bz6_A A Conserved Protein Of   41.6      11 0.00034   17.6   1.3   31  180-210    17-47  (183)
  9 >3do6_A Formate--tetrahydrofol  38.9      23 0.00067   15.7   2.5   27  207-233    15-41  (128)
 10 >1x9p_A Penton protein; jellyr  33.9      30 0.00089   14.9   3.0   15   37-51     32-47  (295)
 11 >1jei_A Emerin; membrane prote  32.7      29 0.00086   15.0   2.2   22  260-281    15-36  (53)
 12 >2v3s_A Serine/threonine-prote  26.7      40  0.0012   14.1   3.0   55   34-88     17-75  (96)
 13 >1q15_A CARA; CMPR, (2S,5S)-5-  26.2      41  0.0012   14.1   3.2   24  280-303    55-79  (111)
 14 >2gu1_A Zinc peptidase; alpha/  25.6      42  0.0012   14.0   4.6   48   33-85      5-55  (95)
 15 >2aff_B MKI67 FHA domain inter  23.4      38  0.0011   14.3   1.5   21  266-286     7-31  (44)

No 1  
>>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12} (A:131-230)
Probab=100.00  E-value=1.8e-43  Score=297.48  Aligned_cols=100  Identities=55%  Similarity=0.793  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHCCC
Q ss_conf             67659999998877776526725788999999997405870244222101015566775420000001015683011023
Q gi|254780532|r  183 PIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYDLTNRKISRSDFSIKTPYNSYLM  262 (325)
Q Consensus       183 ~~~s~~evlilASIVEkEa~~~~e~~~IA~V~~NRL~~~M~Lq~D~Tv~Y~l~~~~~~~~~~~~~~~dl~~~spYNTY~~  262 (325)
                      |..+++|+||||||||+|++.++||++|||||+|||++||+||+|+||+|++++.    ..++++.+|++++||||||++
T Consensus         1 P~~t~~e~ltlASiVe~E~~~~~d~~~IA~V~~NRL~~~m~Lq~D~Tv~Y~~g~~----~~~~~~~~~~~~~spYNTY~~   76 (100)
T 2r1f_A            1 PYKDKNQLVTXASIIEKETAVASERDQVASVFINRLRIGXRLQTDPTVIYGXGER----YNGKLSRADLETPTAYNTYTI   76 (100)
T ss_dssp             CCSSHHHHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHTCCCCCHHHHHHHHGGG----CCSCCCHHHHHSCCTTCTTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC----CCCCCCHHHHCCCCCHHHHHH
T ss_conf             6556346788999997750477899999999999986288623011577611465----555420766324320655300


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             888999866432798999608788
Q gi|254780532|r  263 NGLPPTAISNPGRLSLEAVAKPLH  286 (325)
Q Consensus       263 ~GLPP~PI~~pg~~ai~A~l~p~~  286 (325)
                      +|||||||||||.+||+|||||++
T Consensus        77 ~GLPpgPI~~Pg~~ai~AalnP~k  100 (100)
T 2r1f_A           77 TGLPPGAIATPGADSLKAAAHPAK  100 (100)
T ss_dssp             SSCCSSCSSCCCHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             015741024989999999868788


No 2  
>>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12} (A:37-130)
Probab=99.67  E-value=9.9e-17  Score=126.60  Aligned_cols=79  Identities=23%  Similarity=0.372  Sum_probs=71.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC--------------CCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             33210111103489999986207311134436--------------6881000030112101468978999999999999
Q gi|254780532|r  104 LMHSISFPEGFTVKQMARRLKDNPLLVGELPL--------------ELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQ  169 (325)
Q Consensus       104 ~~~~iTI~EG~t~~ei~~~L~~~~~l~~~~~~--------------~~~lEG~l~PdTY~~~~~~s~~~il~~m~~~~~~  169 (325)
                      .+++||||||+|+.|++++|++.+.+..+...              ..++|||||||||.|.+++++++|+++|+++|.+
T Consensus         2 ~~~~itipEG~t~~ev~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~EGyLfP~TY~~~~~~t~~~il~~m~~~~~~   81 (94)
T 2r1f_A            2 AQFPLRLVEGXRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWXYTANTTDVALLKRAHKKXVK   81 (94)
T ss_dssp             CCEEEECCTTCCHHHHHHHHHSSTTCBCCCSCCCHHHHHHHHTCSSTTSCTTCSCCSEEEECTTCBHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             25899988987299999998524011011223457889874277886672046504336632457667999999999999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             8755655453106
Q gi|254780532|r  170 VVDEVWEIRDVDH  182 (325)
Q Consensus       170 ~~~~~~~~~~~~~  182 (325)
                      .+++.|..|+.++
T Consensus        82 ~l~~~~~~ra~~L   94 (94)
T 2r1f_A           82 AVDSAWEGRADGL   94 (94)
T ss_dssp             HHHHHHHTCCTTC
T ss_pred             HHHHHHHHHHHCC
T ss_conf             8877765432105


No 3  
>>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12} (A:231-270)
Probab=99.29  E-value=1.7e-12  Score=99.52  Aligned_cols=38  Identities=50%  Similarity=0.777  Sum_probs=35.9

Q ss_pred             CCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             98799998389876652999999999999999987288
Q gi|254780532|r  287 TEDLYFVGDGKGGHFFSTNFKDHTINVQKWRKMSLESK  324 (325)
Q Consensus       287 ~dylyfv~~~~g~h~Fs~t~~eH~~nv~~y~~~~~~~k  324 (325)
                      ||||||||+++|+|.||+||+||++||++||+++++++
T Consensus         1 tdyLYFVA~~dG~H~Fs~tl~eH~~~v~~y~~~~~~~~   38 (40)
T 2r1f_A            1 TPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVLKEKN   38 (40)
T ss_dssp             CCCCEEEECSSSSEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf             88599998699977807899999999999999999852


No 4  
>>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12} (A:37-130)
Probab=96.33  E-value=0.012  Score=36.61  Aligned_cols=67  Identities=9%  Similarity=0.004  Sum_probs=50.1

Q ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCHH---HHHHHHHHCC------CCCCCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf             78999888899999999999879806989---9999999538------6676257204406787589999986102
Q gi|254780532|r   35 DTIFLVRNNMSLKEISKNLFNGGVIVNPY---IFRYVTQFYF------GSRGLKTGEYEIEKGSSMSQIAEKIMYG  101 (325)
Q Consensus        35 ~~~i~I~~G~s~~~I~~~L~~~gvI~s~~---~F~~~~~~~~------~~~~ikaG~Y~i~~~~s~~~il~~L~~G  101 (325)
                      .+.|+|++|.++.+|++.|.+.+.+....   ...-..+..+      ...-+-|++|.+.++.+..+|++.+...
T Consensus         3 ~~~itipEG~t~~ev~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~EGyLfP~TY~~~~~~t~~~il~~m~~~   78 (94)
T 2r1f_A            3 QFPLRLVEGXRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWXYTANTTDVALLKRAHKK   78 (94)
T ss_dssp             CEEEECCTTCCHHHHHHHHHSSTTCBCCCSCCCHHHHHHHHTCSSTTSCTTCSCCSEEEECTTCBHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHH
T ss_conf             5899988987299999998524011011223457889874277886672046504336632457667999999999


No 5  
>>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} (A:)
Probab=57.65  E-value=7.3  Score=18.86  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             789998888999999999998798069899999999538667625720440
Q gi|254780532|r   35 DTIFLVRNNMSLKEISKNLFNGGVIVNPYIFRYVTQFYFGSRGLKTGEYEI   85 (325)
Q Consensus        35 ~~~i~I~~G~s~~~I~~~L~~~gvI~s~~~F~~~~~~~~~~~~ikaG~Y~i   85 (325)
                      .+..+|.+|+|+..|+.+..-     +   +.-+.++++....|++|.-..
T Consensus         2 ~~~y~V~~GDTL~~IA~ky~v-----~---~~~l~~~N~~~~~i~~Gq~l~   44 (48)
T 1e0g_A            2 SITYRVRKGDSLSSIAKRHGV-----N---IKDVMRWNSDTANLQPGDKLT   44 (48)
T ss_dssp             CCEEEECTTCCHHHHHHHHTC-----C---HHHHHHHCSCGGGCCTTEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHCC-----C---HHHHHHHCCCCCCCCCCCEEE
T ss_conf             779998899899999999894-----9---999998749913386399999


No 6  
>>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, NMD, RNP domain, MIF4G domain; 1.95A {Homo sapiens} (A:)
Probab=47.86  E-value=11  Score=17.81  Aligned_cols=41  Identities=20%  Similarity=0.434  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCC-CCEEEEEEC--CCCCEEECCCH
Q ss_conf             3888999866432798999608788-987999983--89876652999
Q gi|254780532|r  262 MNGLPPTAISNPGRLSLEAVAKPLH-TEDLYFVGD--GKGGHFFSTNF  306 (325)
Q Consensus       262 ~~GLPP~PI~~pg~~ai~A~l~p~~-~dylyfv~~--~~g~h~Fs~t~  306 (325)
                      ..-|||+    =.++.....+.|.. .||.|||.-  ..+.+.+|+-|
T Consensus         6 iRrLPP~----Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAY   49 (91)
T 1uw4_A            6 IRRLPPT----LTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAY   49 (91)
T ss_dssp             EEEECTT----CCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEE
T ss_pred             EECCCCC----CCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEE
T ss_conf             9369898----9999999985776735899985898688997445799


No 7  
>>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482} (A:57-110,A:322-482)
Probab=43.98  E-value=3.2  Score=21.14  Aligned_cols=20  Identities=15%  Similarity=0.119  Sum_probs=14.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             97899999999999987556
Q gi|254780532|r  155 HRSEILNQAMLKQKQVVDEV  174 (325)
Q Consensus       155 s~~~il~~m~~~~~~~~~~~  174 (325)
                      .-.+++++|..++.+...+.
T Consensus       159 ~~~~~~~~l~~~l~~~~~~~  178 (215)
T 3b5q_A          159 KYSKILAEHRALLDDYITRS  178 (215)
T ss_dssp             GGHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             43999999999999999984


No 8  
>3bz6_A A Conserved Protein Of Unknown Function {Pseudomonas Syringae Pv. Tomato Str. Dc3000} (A:)
Probab=41.61  E-value=11  Score=17.62  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=26.0

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             1066765999999887777652672578899
Q gi|254780532|r  180 VDHPIKSKEDLVILASIVEKETSRADERAHV  210 (325)
Q Consensus       180 ~~~~~~s~~evlilASIVEkEa~~~~e~~~I  210 (325)
                      ......|+.|+=+|..+||||...||-+|+-
T Consensus        17 ~~~~~Ls~~e~RVLG~LiEK~~TTPd~YPLt   47 (183)
T 3bz6_A           17 AEALQLNSTEVRILGCLIEKQATNPETYPLT   47 (183)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHCGGGCSEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             4333458888999988764220377767501


No 9  
>>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} (A:112-239)
Probab=38.89  E-value=23  Score=15.71  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEEEEE
Q ss_conf             889999999974058702442221010
Q gi|254780532|r  207 RAHVASVFINRFSKSIRLQSDSTVIYG  233 (325)
Q Consensus       207 ~~~IA~V~~NRL~~~M~Lq~D~Tv~Y~  233 (325)
                      --++|+++-|++..|.+|++||+-+..
T Consensus        15 ~NLlaA~iDn~i~~gn~l~iDp~~I~w   41 (128)
T 3do6_A           15 HNLLAAVLDSHIKHGNELKIDITRVFW   41 (128)
T ss_dssp             HHHHHHHHHHHHHTTCTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             999999877887623756788644787


No 10 
>>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A (A:88-382)
Probab=33.89  E-value=30  Score=14.92  Aligned_cols=15  Identities=13%  Similarity=-0.028  Sum_probs=6.3

Q ss_pred             EEEECCCC-CHHHHHH
Q ss_conf             99988889-9999999
Q gi|254780532|r   37 IFLVRNNM-SLKEISK   51 (325)
Q Consensus        37 ~i~I~~G~-s~~~I~~   51 (325)
                      .++||+|- |...+..
T Consensus        32 ~~tiPEGNys~~~~ID   47 (295)
T 1x9p_A           32 EFTLPEGNYSETMTID   47 (295)
T ss_dssp             EEECCCBCCBHHHHHH
T ss_pred             EEECCCCCCCHHHHHH
T ss_conf             9866687751447999


No 11 
>>1jei_A Emerin; membrane protein; NMR {Synthetic} (A:)
Probab=32.68  E-value=29  Score=15.02  Aligned_cols=22  Identities=14%  Similarity=0.113  Sum_probs=15.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             0238889998664327989996
Q gi|254780532|r  260 YLMNGLPPTAISNPGRLSLEAV  281 (325)
Q Consensus       260 Y~~~GLPP~PI~~pg~~ai~A~  281 (325)
                      -+..|+|||||-.-.+.-.+-=
T Consensus        15 L~~~G~~~GPIt~tTR~vy~kk   36 (53)
T 1jei_A           15 LRRYNIPHGPVVGSTRRLYEKK   36 (53)
T ss_dssp             HSSSCCSCCCCCSGGGHHHHHH
T ss_pred             HHHHCCCCCCCCCCHHHHHHHH
T ss_conf             9992999888006139999999


No 12 
>>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens} (A:)
Probab=26.70  E-value=40  Score=14.14  Aligned_cols=55  Identities=13%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             CCEEEEECCC-CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC---CCCCCCCEEEECCC
Q ss_conf             8789998888-9999999999987980698999999995386---67625720440678
Q gi|254780532|r   34 NDTIFLVRNN-MSLKEISKNLFNGGVIVNPYIFRYVTQFYFG---SRGLKTGEYEIEKG   88 (325)
Q Consensus        34 ~~~~i~I~~G-~s~~~I~~~L~~~gvI~s~~~F~~~~~~~~~---~~~ikaG~Y~i~~~   88 (325)
                      ++.-|+-.+| +|...|+++|..+|++.-.......+.+.+.   ....|.=+|.+..+
T Consensus        17 nDIrFef~~g~DTaegia~ELv~AgLVDg~D~vivAanLqklv~~~~~~k~vtF~L~SG   75 (96)
T 2v3s_A           17 NDIRFEFTPGRDTAEGVSQELISAGLVDGRDLVIVAANLQKIVEEPQSNRSVTFKLASG   75 (96)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHCTTTCSEEEEECGGG
T ss_pred             HCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             14267730587641046788863567577118999988999861805464289985377


No 13 
>>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} (A:41-123,A:182-209)
Probab=26.23  E-value=41  Score=14.09  Aligned_cols=24  Identities=8%  Similarity=0.224  Sum_probs=12.3

Q ss_pred             HHCCCCCCCEEEEEECCCCC-EEEC
Q ss_conf             96087889879999838987-6652
Q gi|254780532|r  280 AVAKPLHTEDLYFVGDGKGG-HFFS  303 (325)
Q Consensus       280 A~l~p~~~dylyfv~~~~g~-h~Fs  303 (325)
                      +||.-+++||-||.-+++|+ |.++
T Consensus        55 sALsLAEGDFcFFIEdknG~L~llT   79 (111)
T 1q15_A           55 NALALAEGDFCFFIDEPNGELTVIT   79 (111)
T ss_dssp             GGGGGCCSSEEEEEECTTSCEEEEE
T ss_pred             HHHHHCCEEEEEEEECCCCEEEEEE
T ss_conf             8998708768999997899499998


No 14 
>>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:1-95)
Probab=25.58  E-value=42  Score=14.02  Aligned_cols=48  Identities=13%  Similarity=0.081  Sum_probs=28.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC---CCCCCCCCEEEE
Q ss_conf             78789998888999999999998798069899999999538---667625720440
Q gi|254780532|r   33 QNDTIFLVRNNMSLKEISKNLFNGGVIVNPYIFRYVTQFYF---GSRGLKTGEYEI   85 (325)
Q Consensus        33 ~~~~~i~I~~G~s~~~I~~~L~~~gvI~s~~~F~~~~~~~~---~~~~ikaG~Y~i   85 (325)
                      .......|.+|+|+..|+++..    +....+..+ .+..+   ....|++|.=..
T Consensus         5 ~~~~~~~V~~GDTL~~Ia~~~g----v~~~~l~~~-~~~~~~~~~~~~l~~Gq~l~   55 (95)
T 2gu1_A            5 PKRIHYMVKVGDTLSGIFAQLG----VPYSILQKI-LSVDLDHLQLDMIQPGEELE   55 (95)
T ss_dssp             --CEEEECCTTCCHHHHHHHTT----CCHHHHHHH-HHHGGGTCCGGGCCTTCEEE
T ss_pred             CCEEEEEECCCCCHHHHHHHCC----CCHHHHHHH-HHHCCCCCCHHHCCCCCEEE
T ss_conf             8436889899984999998859----899999999-97360457462179999899


No 15 
>>2aff_B MKI67 FHA domain interacting nucleolar phosphoprotein; NIFK, , cell cycle; HET: SEP TPO; NMR {Escherichia coli} (B:)
Probab=23.44  E-value=38  Score=14.28  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=14.4

Q ss_pred             CCCCCCCCC----HHHHHHHCCCCC
Q ss_conf             999866432----798999608788
Q gi|254780532|r  266 PPTAISNPG----RLSLEAVAKPLH  286 (325)
Q Consensus       266 PP~PI~~pg----~~ai~A~l~p~~  286 (325)
                      -|||+|.|.    +.|-.|.++..+
T Consensus         7 ~pTPVCTPtfLErRKsq~a~~~~dd   31 (44)
T 2aff_B            7 GPXPVCXPTFLERRKSQVAELNDDD   31 (44)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHCCGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             9976456889988787886506987


Done!