Query gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 325
No_of_seqs 217 out of 1862
Neff 8.0
Searched_HMMs 23785
Date Tue May 31 21:02:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780532.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r1f_A Protein YCEG, predicted 100.0 0 0 619.9 21.0 253 68-324 2-268 (270)
2 2r1f_A Protein YCEG, predicted 93.6 0.073 3.1E-06 30.7 4.4 67 34-100 38-113 (270)
3 1e0g_A Membrane-bound lytic mu 57.9 9 0.00038 17.3 4.3 42 35-84 2-43 (48)
4 1rw3_A POL polyprotein; RNA an 53.5 7.6 0.00032 17.8 2.7 15 46-60 55-69 (455)
5 3fsi_A RT, reverse transcripta 37.9 16 0.00066 15.8 2.3 66 255-322 155-226 (255)
6 1x9p_A Penton protein; jellyro 35.8 20 0.00083 15.1 3.0 18 106-123 118-136 (523)
7 3czh_A Cytochrome P450 2R1; vi 32.0 13 0.00056 16.2 1.2 13 45-57 65-77 (481)
8 2nr3_A Hypothetical protein; A 31.0 14 0.00058 16.1 1.1 27 184-210 21-47 (183)
9 2zkt_A 2,3-bisphosphoglycerate 24.7 30 0.0013 14.0 1.9 52 212-274 328-379 (412)
10 2a3m_A COG3005: nitrate/TMAO r 24.5 13 0.00054 16.3 0.0 17 1-17 1-17 (130)
11 1vk3_A Phosphoribosylformylgly 24.0 22 0.00095 14.8 1.2 62 254-322 491-553 (615)
12 1rd5_A Tryptophan synthase alp 23.9 28 0.0012 14.2 1.6 59 257-316 136-199 (262)
13 2aff_B MKI67 FHA domain intera 22.9 28 0.0012 14.2 1.5 20 266-285 7-30 (44)
14 1gjj_A LAP2; inner nuclear mem 20.6 26 0.0011 14.4 0.9 19 260-278 124-142 (168)
15 1ujp_A Tryptophan synthase alp 20.5 37 0.0016 13.4 1.8 55 261-316 141-200 (271)
16 1auk_A Arylsulfatase A; cerebr 20.3 17 0.00071 15.6 -0.1 11 50-60 31-41 (489)
No 1
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12}
Probab=100.00 E-value=0 Score=619.93 Aligned_cols=253 Identities=38% Similarity=0.587 Sum_probs=235.6
Q ss_pred HHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-------------
Q ss_conf 9995386676257204406787589999986102433321011110348999998620731113443-------------
Q gi|254780532|r 68 VTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMARRLKDNPLLVGELP------------- 134 (325)
Q Consensus 68 ~~~~~~~~~~ikaG~Y~i~~~~s~~~il~~L~~G~~~~~~iTI~EG~t~~ei~~~L~~~~~l~~~~~------------- 134 (325)
++|+.+...+||||+|.|+++||..+|+..|.+|++..++||||||+|+.||+++|++...+.....
T Consensus 2 llr~~p~~s~ikaG~Y~l~~~ms~~~i~~~L~~G~~~~~~vtI~EG~t~~~i~~~L~~~~~i~~~~~~~~~~~~~~~~~~ 81 (270)
T 2r1f_A 2 LLRIEPDLSHFKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALEL 81 (270)
T ss_dssp ---------CCCCEEEEECTTCCHHHHHHHHHHCCCCCEEEECCTTCCHHHHHHHHHSSTTCBCCCSCCCHHHHHHHHTC
T ss_pred CEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 64107682560547989799999999999986489615899977885399999999857154011222467888864276
Q ss_pred -CCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf -6688100003011210146897899999999999987556554531066765999999887777652672578899999
Q gi|254780532|r 135 -LELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDVDHPIKSKEDLVILASIVEKETSRADERAHVASV 213 (325)
Q Consensus 135 -~~~~lEG~l~PdTY~~~~~~s~~~il~~m~~~~~~~~~~~~~~~~~~~~~~s~~evlilASIVEkEa~~~~e~~~IA~V 213 (325)
...++|||||||||+|.+++++++|+++|+++|.+++++.|..+....++.|++|+||||||||+||+.++|||+||||
T Consensus 82 ~~~~~lEG~LfPdTY~~~~~~t~~~il~~m~~~~~~~~~~~~~~~~~~~~~~s~~e~ltlASIVEkEa~~~~e~~~IA~V 161 (270)
T 2r1f_A 82 ENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKETAVASERDQVASV 161 (270)
T ss_dssp SSTTSCTTCSCCSEEEECTTCBHHHHHHHHHHHHHHHHHHHHHTCCTTCCCSSHHHHHHHHHHHHHHCCSGGGHHHHHHH
T ss_pred CCCCCCCEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 88777014761866641255889999999999999998777765531035678999999999988851571668999999
Q ss_pred HHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEE
Q ss_conf 99974058702442221010155667754200000010156830110238889998664327989996087889879999
Q gi|254780532|r 214 FINRFSKSIRLQSDSTVIYGILEGDYDLTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFV 293 (325)
Q Consensus 214 ~~NRL~~~M~Lq~D~Tv~Y~l~~~~~~~~~~~~~~~dl~~~spYNTY~~~GLPP~PI~~pg~~ai~A~l~p~~~dylyfv 293 (325)
|+|||++||+||+||||+||+++. ..++++++|++++||||||+++|||||||||||.+||+||+||+++||||||
T Consensus 162 ~~NRL~~~m~Lq~D~Tv~Y~~~~~----~~~~~~~~dl~~~sPYNTY~~~GLPPgPI~~Pg~~ai~Aal~P~~~~ylyFv 237 (270)
T 2r1f_A 162 FINRLRIGMRLQTDPTVIYGMGER----YNGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFV 237 (270)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHGGG----CCSCCCHHHHHSCCTTCTTTSSSCCSSCSSCCCHHHHHHHHSCCCCCCCEEE
T ss_pred HHHHCCCCCCCCCCCHHHHHCCCC----CCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf 999634699877673445304675----4554207775268852431507999976678799999998688888849999
Q ss_pred ECCCCCEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8389876652999999999999999987288
Q gi|254780532|r 294 GDGKGGHFFSTNFKDHTINVQKWRKMSLESK 324 (325)
Q Consensus 294 ~~~~g~h~Fs~t~~eH~~nv~~y~~~~~~~k 324 (325)
+|++|+|+||+||+||++||++||+|++++.
T Consensus 238 a~~~G~~~Fs~t~~eH~~~v~~y~~~~~~~~ 268 (270)
T 2r1f_A 238 ADGKGGHTFNTNLASHNKSVQDYLKVLKEKN 268 (270)
T ss_dssp ECSSSSEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8599977807899999999999999999851
No 2
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12}
Probab=93.60 E-value=0.073 Score=30.66 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=48.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCHH---HHHHHHHHCC------CCCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 878999888899999999999879806989---9999999538------667625720440678758999998610
Q gi|254780532|r 34 NDTIFLVRNNMSLKEISKNLFNGGVIVNPY---IFRYVTQFYF------GSRGLKTGEYEIEKGSSMSQIAEKIMY 100 (325)
Q Consensus 34 ~~~~i~I~~G~s~~~I~~~L~~~gvI~s~~---~F~~~~~~~~------~~~~ikaG~Y~i~~~~s~~~il~~L~~ 100 (325)
..+.|+|++|.+..+|++.|.+.+.+.... .+.......+ ...-+-|++|.+..+.+..+|+..+..
T Consensus 38 ~~~~vtI~EG~t~~~i~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lEG~LfPdTY~~~~~~t~~~il~~m~~ 113 (270)
T 2r1f_A 38 AQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHK 113 (270)
T ss_dssp CCEEEECCTTCCHHHHHHHHHSSTTCBCCCSCCCHHHHHHHHTCSSTTSCTTCSCCSEEEECTTCBHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEECCCCCCHHHHHHHHHH
T ss_conf 1589997788539999999985715401122246788886427688777014761866641255889999999999
No 3
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=57.90 E-value=9 Score=17.31 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=29.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 78999888899999999999879806989999999953866762572044
Q gi|254780532|r 35 DTIFLVRNNMSLKEISKNLFNGGVIVNPYIFRYVTQFYFGSRGLKTGEYE 84 (325)
Q Consensus 35 ~~~i~I~~G~s~~~I~~~L~~~gvI~s~~~F~~~~~~~~~~~~ikaG~Y~ 84 (325)
.+..+|.+|+|+..|++... .+ ..-+.++++....|++|.-.
T Consensus 2 ~v~y~V~~GDTl~~IA~~y~-----vs---~~~i~~~N~l~~~i~~Gq~L 43 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKRHG-----VN---IKDVMRWNSDTANLQPGDKL 43 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHT-----CC---HHHHHHHCSCGGGCCTTEEE
T ss_pred CEEEEECCCCCHHHHHHHHC-----CC---HHHHHHHCCCCCCCCCCCEE
T ss_conf 77999899999999999989-----68---99999865994558879999
No 4
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=53.45 E-value=7.6 Score=17.78 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=11.4
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999999879806
Q gi|254780532|r 46 LKEISKNLFNGGVIV 60 (325)
Q Consensus 46 ~~~I~~~L~~~gvI~ 60 (325)
+.+..+.|.++|+|.
T Consensus 55 ~~~~i~~ll~~G~I~ 69 (455)
T 1rw3_A 55 IKPHIQRLLDQGILV 69 (455)
T ss_dssp SHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCEEE
T ss_conf 999999999799688
No 5
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=37.91 E-value=16 Score=15.76 Aligned_cols=66 Identities=11% Similarity=-0.088 Sum_probs=44.0
Q ss_pred CCCHHCCCCCCCCCCCCCCCH--HHHHHHCCCCC----CCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 830110238889998664327--98999608788----987999983898766529999999999999999872
Q gi|254780532|r 255 TPYNSYLMNGLPPTAISNPGR--LSLEAVAKPLH----TEDLYFVGDGKGGHFFSTNFKDHTINVQKWRKMSLE 322 (325)
Q Consensus 255 spYNTY~~~GLPP~PI~~pg~--~ai~A~l~p~~----~dylyfv~~~~g~h~Fs~t~~eH~~nv~~y~~~~~~ 322 (325)
.+...|.+.-||=|-.++|.. .++..++.+-. +-+..... |.-..+|+|.+||+++++.-.+..++
T Consensus 155 ~~~g~y~~~~lp~Gl~~Sp~~Fq~~~~~il~~l~~~~~~~~v~~y~--DDili~s~t~~e~~~~l~~vl~~L~~ 226 (255)
T 3fsi_A 155 GISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV--DDLLLAATSELDCQQGTRALLQTLGN 226 (255)
T ss_dssp CCSSEEEESBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEET--TEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE--EEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 6641479986232026969999999999999998647651456775--25999439999999999999999998
No 6
>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A
Probab=35.82 E-value=20 Score=15.12 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=8.4
Q ss_pred CCCCCCCCC-CHHHHHHHH
Q ss_conf 210111103-489999986
Q gi|254780532|r 106 HSISFPEGF-TVKQMARRL 123 (325)
Q Consensus 106 ~~iTI~EG~-t~~ei~~~L 123 (325)
+.+|||||- +..+++..+
T Consensus 118 ~eltiPEGNys~~~~IDLm 136 (523)
T 1x9p_A 118 VEFTLPEGNYSETMTIDLM 136 (523)
T ss_dssp EEEECCCBCCBHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHH
T ss_conf 9986668775155799988
No 7
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=32.00 E-value=13 Score=16.21 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHCC
Q ss_conf 9999999999879
Q gi|254780532|r 45 SLKEISKNLFNGG 57 (325)
Q Consensus 45 s~~~I~~~L~~~g 57 (325)
+...|-+.|.+++
T Consensus 65 dp~~ik~il~~~~ 77 (481)
T 3czh_A 65 GYDVVKECLVHQS 77 (481)
T ss_dssp SHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHCC
T ss_conf 9999999997385
No 8
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=31.04 E-value=14 Score=16.14 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 765999999887777652672578899
Q gi|254780532|r 184 IKSKEDLVILASIVEKETSRADERAHV 210 (325)
Q Consensus 184 ~~s~~evlilASIVEkEa~~~~e~~~I 210 (325)
..|+.|+=+|..+||||...||-+|+-
T Consensus 21 ~Ls~~E~RVLG~LiEKe~TTPd~YPLt 47 (183)
T 2nr3_A 21 QLNSTEVRILGCLIEKQATNPETYPLT 47 (183)
T ss_dssp CBCHHHHHHHHHHHHHHHHCGGGCSEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 679999899998531123587767630
No 9
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; phosphonopyruvate decarboxylate, isomerase, structural genomics, NPPSFA; 2.40A {Pyrococcus horikoshii}
Probab=24.73 E-value=30 Score=13.96 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=21.3
Q ss_pred HHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 999997405870244222101015566775420000001015683011023888999866432
Q gi|254780532|r 212 SVFINRFSKSIRLQSDSTVIYGILEGDYDLTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPG 274 (325)
Q Consensus 212 ~V~~NRL~~~M~Lq~D~Tv~Y~l~~~~~~~~~~~~~~~dl~~~spYNTY~~~GLPP~PI~~pg 274 (325)
|-++.-|+. |-|++.-..++..... ...|.....|+= -.-+|.+++.+..-.
T Consensus 328 G~il~~L~~------dnTiIIfTSDHG~~~~----~g~H~~~rVPli-i~~Pg~~~~~~~~~~ 379 (412)
T 2zkt_A 328 GYILDHVDL------EEVVIAITGDHSTPCE----VMNHSGDPVPLL-IAGGGVRTDDTKRFG 379 (412)
T ss_dssp HHHHTTSCT------TTEEEEEECSSBCCTT----TTSCBCCCEEEE-EESTTCCCCSCCSCS
T ss_pred HHHHHHHHH------CCCEEEEECCCCCCCC----CCCCCCCEEEEE-EEECCCCCCCCCCCC
T ss_conf 999999997------7989999637999402----555369637589-995996678755446
No 10
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=24.48 E-value=13 Score=16.31 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 95799999999999999
Q gi|254780532|r 1 MLKFLIPLITIFLLAIG 17 (325)
Q Consensus 1 m~k~li~li~i~~l~~~ 17 (325)
|+|.|+.+++++++++.
T Consensus 1 mkk~l~~~~~~~~~~~~ 17 (130)
T 2a3m_A 1 MRKSLFAVMVLALVAAF 17 (130)
T ss_dssp -----------------
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 90499999999999999
No 11
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=24.05 E-value=22 Score=14.76 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=37.6
Q ss_pred CCCCHHCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 6830110238889998664-32798999608788987999983898766529999999999999999872
Q gi|254780532|r 254 KTPYNSYLMNGLPPTAISN-PGRLSLEAVAKPLHTEDLYFVGDGKGGHFFSTNFKDHTINVQKWRKMSLE 322 (325)
Q Consensus 254 ~spYNTY~~~GLPP~PI~~-pg~~ai~A~l~p~~~dylyfv~~~~g~h~Fs~t~~eH~~nv~~y~~~~~~ 322 (325)
||=||++...-.|||||.. .|.-.....+.| +.+-+|.+...+. .++...++.+..++...+
T Consensus 491 dSl~n~~~~~~IppTlvi~avg~v~~~~~~~~-~~~~i~lvG~~~~------dl~~~k~~~~~i~~li~~ 553 (615)
T 1vk3_A 491 ASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKP-KPSKVFAVGWNDF------ELEREKELWRAIRKLSEE 553 (615)
T ss_dssp EECCCEETTEECCCEEEEEEEEEECGGGCCCC-CSEEEEEEEESSC------CHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCEEECC-CCCEEEEECCCCC------CHHHHHHHHHHHHHHHHC
T ss_conf 14547538942798738999997231004568-9998999789888------889999999999999962
No 12
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=23.95 E-value=28 Score=14.19 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=39.5
Q ss_pred CHHCCCCCCCCCCCCCC--CHHHHHHHCCCCCCCEEEEEECC--CC-CEEECCCHHHHHHHHHHH
Q ss_conf 01102388899986643--27989996087889879999838--98-766529999999999999
Q gi|254780532|r 257 YNSYLMNGLPPTAISNP--GRLSLEAVAKPLHTEDLYFVGDG--KG-GHFFSTNFKDHTINVQKW 316 (325)
Q Consensus 257 YNTY~~~GLPP~PI~~p--g~~ai~A~l~p~~~dylyfv~~~--~g-~h~Fs~t~~eH~~nv~~y 316 (325)
.+.=+..||.+=|+.+| +.+=|+++.. ..++|+|.|+.. +| ...+.....++.+.++++
T Consensus 136 ~~~~~~~~l~~I~lvaPtt~~~ri~~i~~-~a~gfIY~vs~~GvTG~~~~~~~~~~~~i~~ir~~ 199 (262)
T 1rd5_A 136 WSEAKNNNLELVLLTTPAIPEDRMKEITK-ASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKV 199 (262)
T ss_dssp HHHHHHTTCEECEEECTTSCHHHHHHHHH-HCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 88875104340010167771878887632-69862786303464221221210278899987513
No 13
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=22.90 E-value=28 Score=14.18 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=14.1
Q ss_pred CCCCCCCCC----HHHHHHHCCCC
Q ss_conf 999866432----79899960878
Q gi|254780532|r 266 PPTAISNPG----RLSLEAVAKPL 285 (325)
Q Consensus 266 PP~PI~~pg----~~ai~A~l~p~ 285 (325)
-|||+|.|. +.|-.|.++..
T Consensus 7 ~pTPVCTPt~LErRKs~~~~~~~d 30 (44)
T 2aff_B 7 GPTPVCTPTFLERRKSQVAELNDD 30 (44)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCCGG
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 997645688998888787531787
No 14
>1gjj_A LAP2; inner nuclear membrane protein, lamin-associated polypeptide, LEM domain, multidimensional dipolar couplings; NMR {Homo sapiens} SCOP: a.140.1.1 a.140.1.1 PDB: 1h9e_A 1h9f_A
Probab=20.55 E-value=26 Score=14.37 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCHHHH
Q ss_conf 0238889998664327989
Q gi|254780532|r 260 YLMNGLPPTAISNPGRLSL 278 (325)
Q Consensus 260 Y~~~GLPP~PI~~pg~~ai 278 (325)
-+..|+|||||-.-.+.-.
T Consensus 124 L~~~G~~~GPIt~sTR~vy 142 (168)
T 1gjj_A 124 LVKYGVNPGPIVGTTRKLY 142 (168)
T ss_dssp EEBTTCCCCCCCSSEHHHH
T ss_pred HHHCCCCCCCCCCCHHHHH
T ss_conf 9984999998662419999
No 15
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.47 E-value=37 Score=13.38 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCC--HHHHHHHCCCCCCCEEEEEECC--CCC-EEECCCHHHHHHHHHHH
Q ss_conf 23888999866432--7989996087889879999838--987-66529999999999999
Q gi|254780532|r 261 LMNGLPPTAISNPG--RLSLEAVAKPLHTEDLYFVGDG--KGG-HFFSTNFKDHTINVQKW 316 (325)
Q Consensus 261 ~~~GLPP~PI~~pg--~~ai~A~l~p~~~dylyfv~~~--~g~-h~Fs~t~~eH~~nv~~y 316 (325)
.-.||++=|..+|. .+-|+.... ..++|+|.|+.. +|. ..+.....++.+.++++
T Consensus 141 ~~~gl~~I~lvaPtt~~~Ri~~i~~-~s~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~ 200 (271)
T 1ujp_A 141 QEIGLETVFLLAPTSTDARIATVVR-HATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR 200 (271)
T ss_dssp HHHTCEEECEECTTCCHHHHHHHHT-TCCSCEEEECC------------CCHHHHHHHHTT
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 8569867999478885789999997-39870788403677776655523589999875105
No 16
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal enzyme, hydrolase; HET: NDG NAG; 2.10A {Homo sapiens} SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P* 1e3c_P* 1e33_P*
Probab=20.31 E-value=17 Score=15.55 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=6.7
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999879806
Q gi|254780532|r 50 SKNLFNGGVIV 60 (325)
Q Consensus 50 ~~~L~~~gvI~ 60 (325)
.+.|.++|+..
T Consensus 31 lD~La~~Gv~F 41 (489)
T 1auk_A 31 LDQLAAGGLRF 41 (489)
T ss_dssp HHHHHHTSEEE
T ss_pred HHHHHHHCEEE
T ss_conf 99999706063
Done!