Query gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 325
No_of_seqs 217 out of 1862
Neff 8.0
Searched_HMMs 13730
Date Wed Jun 1 09:37:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780532.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bz6a1 a.4.5.75 (A:13-96) Hyp 51.5 2.6 0.00019 19.2 1.3 28 183-210 5-32 (84)
2 d1e0ga_ d.7.1.1 (A:) Membrane- 51.3 6.6 0.00048 16.6 4.3 42 35-84 2-43 (48)
3 d1ztwa1 e.8.1.2 (A:24-278) MML 47.7 7.5 0.00055 16.3 3.7 66 255-322 155-226 (255)
4 d1l0wa2 d.74.4.1 (A:295-414) P 44.9 8.3 0.0006 16.0 3.6 30 267-296 66-98 (120)
5 d1gjja2 a.140.1.1 (A:111-153) 36.9 8.2 0.0006 16.0 2.0 20 260-279 14-33 (43)
6 d2fug13 d.15.13.1 (1:250-333) 36.2 8.5 0.00062 15.9 2.0 38 78-115 10-47 (84)
7 d1uw4a_ d.58.7.4 (A:) RNA proc 32.0 8.7 0.00064 15.9 1.5 20 275-294 15-35 (91)
8 d1auka_ c.76.1.2 (A:) Arylsulf 24.1 7.3 0.00053 16.3 -0.1 10 51-60 32-41 (485)
9 d1hara_ e.8.1.2 (A:) HIV-1 rev 22.7 19 0.0014 13.7 4.9 68 255-323 139-212 (216)
10 d1vk3a2 d.79.4.1 (A:346-507) P 21.7 5.4 0.00039 17.2 -1.2 18 255-272 135-152 (162)
11 d1p49a_ c.76.1.2 (A:) Steryl-s 20.4 16 0.0011 14.3 1.0 33 288-320 478-512 (553)
No 1
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=51.52 E-value=2.6 Score=19.20 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 6765999999887777652672578899
Q gi|254780532|r 183 PIKSKEDLVILASIVEKETSRADERAHV 210 (325)
Q Consensus 183 ~~~s~~evlilASIVEkEa~~~~e~~~I 210 (325)
-..|+.|+=+|+.+||||...||-+|+-
T Consensus 5 ~~Ls~~E~RVlG~LiEK~~TTPd~YPLs 32 (84)
T d3bz6a1 5 LQLNSTEVRILGCLIEKQATNPETYPLT 32 (84)
T ss_dssp CCBCHHHHHHHHHHHHHHHHCGGGCSEE
T ss_pred CCCCHHHHHHHHHHHEECCCCCCCCCCH
T ss_conf 1058889778875200023587767626
No 2
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=51.30 E-value=6.6 Score=16.64 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=28.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 78999888899999999999879806989999999953866762572044
Q gi|254780532|r 35 DTIFLVRNNMSLKEISKNLFNGGVIVNPYIFRYVTQFYFGSRGLKTGEYE 84 (325)
Q Consensus 35 ~~~i~I~~G~s~~~I~~~L~~~gvI~s~~~F~~~~~~~~~~~~ikaG~Y~ 84 (325)
.+..+|.+|+|+..|++... .+ ..-+.+.++....|++|.=.
T Consensus 2 ~v~y~V~~GDTl~~IA~~y~-----vs---~~~i~~~N~l~~~l~~Gq~L 43 (48)
T d1e0ga_ 2 SITYRVRKGDSLSSIAKRHG-----VN---IKDVMRWNSDTANLQPGDKL 43 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHT-----CC---HHHHHHHCSCGGGCCTTEEE
T ss_pred CEEEEECCCCCHHHHHHHHC-----CC---HHHHHHHCCCCCCCCCCCEE
T ss_conf 67999899999999999979-----88---99999875996668679999
No 3
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=47.66 E-value=7.5 Score=16.28 Aligned_cols=66 Identities=11% Similarity=-0.089 Sum_probs=44.9
Q ss_pred CCCHHCCCCCCCCCCCCCCCH--HHHHHHCCCCC----CCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 830110238889998664327--98999608788----987999983898766529999999999999999872
Q gi|254780532|r 255 TPYNSYLMNGLPPTAISNPGR--LSLEAVAKPLH----TEDLYFVGDGKGGHFFSTNFKDHTINVQKWRKMSLE 322 (325)
Q Consensus 255 spYNTY~~~GLPP~PI~~pg~--~ai~A~l~p~~----~dylyfv~~~~g~h~Fs~t~~eH~~nv~~y~~~~~~ 322 (325)
++.-.|....||=|-.++|.. .++..++.+-. .-... .=-|.-..+|+|.+||.++++.-.+..++
T Consensus 155 ~~~g~y~~~~lPfGl~~spa~fq~~~~~il~~~~~~~~~~~~~--~Y~DDili~s~t~~eh~~~l~~vl~~l~~ 226 (255)
T d1ztwa1 155 GISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILL--QYVDDLLLAATSELDCQQGTRALLQTLGN 226 (255)
T ss_dssp CCSSEEEESBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEE--EETTEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEE--EEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7774038965001111331233889999998754038725888--87654310689999999999999999998
No 4
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=44.92 E-value=8.3 Score=16.01 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCCCC---CCCHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 99866---4327989996087889879999838
Q gi|254780532|r 267 PTAIS---NPGRLSLEAVAKPLHTEDLYFVGDG 296 (325)
Q Consensus 267 P~PI~---~pg~~ai~A~l~p~~~dylyfv~~~ 296 (325)
-|||+ .+-..+|...++..++|.++|+++.
T Consensus 66 ~gpi~Kfl~~~~~~l~~~~~~~~GD~i~f~ag~ 98 (120)
T d1l0wa2 66 SGGVAKFLEPVREALLQATEARPGDTLLFVAGP 98 (120)
T ss_dssp ESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 437988868999999998089999999998498
No 5
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.88 E-value=8.2 Score=16.02 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCHHHHH
Q ss_conf 02388899986643279899
Q gi|254780532|r 260 YLMNGLPPTAISNPGRLSLE 279 (325)
Q Consensus 260 Y~~~GLPP~PI~~pg~~ai~ 279 (325)
-+-.|+|||||..-.+.-.+
T Consensus 14 L~~~G~~~GPIt~sTR~vy~ 33 (43)
T d1gjja2 14 LVKYGVNPGPIVGTTRKLYE 33 (43)
T ss_dssp EEBTTCCCCCCCSSEHHHHH
T ss_pred HHHCCCCCCCCCCCHHHHHH
T ss_conf 99859999994825199999
No 6
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=36.25 E-value=8.5 Score=15.93 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 25720440678758999998610243332101111034
Q gi|254780532|r 78 LKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFT 115 (325)
Q Consensus 78 ikaG~Y~i~~~~s~~~il~~L~~G~~~~~~iTI~EG~t 115 (325)
-+||.|+++-++++.+++..+.-|.....+-.+|=|..
T Consensus 10 ~~PGvyEvp~G~tl~elI~~~~GG~~~~~kav~~GG~s 47 (84)
T d2fug13 10 KRPGVYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSS 47 (84)
T ss_dssp SSCEEEEEETTCBHHHHHTTTTCCBSSCEEEEECSCTT
T ss_pred CCCCEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 37847998189899999998601355543799968887
No 7
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.01 E-value=8.7 Score=15.86 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=8.1
Q ss_pred HHHHHHHCCCCC-CCEEEEEE
Q ss_conf 798999608788-98799998
Q gi|254780532|r 275 RLSLEAVAKPLH-TEDLYFVG 294 (325)
Q Consensus 275 ~~ai~A~l~p~~-~dylyfv~ 294 (325)
++...+.+.|.. .||+|||.
T Consensus 15 e~~F~~~l~~~~~~d~~~f~~ 35 (91)
T d1uw4a_ 15 KEQLQEHLQPMPEHDYFEFFS 35 (91)
T ss_dssp HHHHHHHHCSCCCEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEEEC
T ss_conf 999999857767458998858
No 8
>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.15 E-value=7.3 Score=16.35 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.0
Q ss_pred HHHHHCCCCC
Q ss_conf 9999879806
Q gi|254780532|r 51 KNLFNGGVIV 60 (325)
Q Consensus 51 ~~L~~~gvI~ 60 (325)
+.|.++|+..
T Consensus 32 D~LA~~G~~F 41 (485)
T d1auka_ 32 DQLAAGGLRF 41 (485)
T ss_dssp HHHHHTSEEE
T ss_pred HHHHHCCCEE
T ss_conf 9999708243
No 9
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.67 E-value=19 Score=13.66 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCCHHCCCCCCCCCCCCCCC--HHHHHHHCCCCCC---CEEEEEECCCCCEEECC-CHHHHHHHHHHHHHHHHHC
Q ss_conf 83011023888999866432--7989996087889---87999983898766529-9999999999999998728
Q gi|254780532|r 255 TPYNSYLMNGLPPTAISNPG--RLSLEAVAKPLHT---EDLYFVGDGKGGHFFST-NFKDHTINVQKWRKMSLES 323 (325)
Q Consensus 255 spYNTY~~~GLPP~PI~~pg--~~ai~A~l~p~~~---dylyfv~~~~g~h~Fs~-t~~eH~~nv~~y~~~~~~~ 323 (325)
+++-+|...-||=|-.++|. ..++..++.+-.. +..-++= -|.=..||+ |.+||.+.+++-.+..++.
T Consensus 139 t~~g~y~~~~lPfGl~naPa~fqr~m~~~l~~~~~~~~~~~v~~Y-lDDIlI~S~~~~eeH~~~l~~vl~~L~~~ 212 (216)
T d1hara_ 139 TPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQY-MDDLYVGSDLAIGAHRTKIEELRQHLLRW 212 (216)
T ss_dssp SCCEEEEESBCCTTCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEE-TTEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE-CCEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 126528999707766585799999999999987614887699997-82389846998899999999999999984
No 10
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]}
Probab=21.65 E-value=5.4 Score=17.21 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=14.9
Q ss_pred CCCHHCCCCCCCCCCCCC
Q ss_conf 830110238889998664
Q gi|254780532|r 255 TPYNSYLMNGLPPTAISN 272 (325)
Q Consensus 255 spYNTY~~~GLPP~PI~~ 272 (325)
|=||+|...-.||||+-.
T Consensus 135 SlyN~~~~~~I~PTp~i~ 152 (162)
T d1vk3a2 135 SLYNTYQGKPIPPTLVVG 152 (162)
T ss_dssp ECCCEETTEECCCEEEEE
T ss_pred EECCCCCCCCCCCCCEEE
T ss_conf 540576898689866799
No 11
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.38 E-value=16 Score=14.26 Aligned_cols=33 Identities=6% Similarity=0.012 Sum_probs=14.8
Q ss_pred CEEEEEE-CCCCCEEECC-CHHHHHHHHHHHHHHH
Q ss_conf 8799998-3898766529-9999999999999998
Q gi|254780532|r 288 EDLYFVG-DGKGGHFFST-NFKDHTINVQKWRKMS 320 (325)
Q Consensus 288 dylyfv~-~~~g~h~Fs~-t~~eH~~nv~~y~~~~ 320 (325)
..||=+. |+.-.+.-+. .-+++.+-+++.+++.
T Consensus 478 ~eLyDL~~DP~E~~NL~~~~~~~~~~l~~~l~~~l 512 (553)
T d1p49a_ 478 PLLFDISKDPRERNPLTPASEPRFYEILKVMQEAA 512 (553)
T ss_dssp CEEEETTTCTTCCSCCCSTTTTSHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 80615675831440346346889999999999999
Done!