RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase
[Candidatus Liberibacter asiaticus str. psy62]
         (325 letters)



>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural
           genomics, unknown function, PFAM 02618, PSI-2, protein
           structure initiative; 2.21A {Escherichia coli K12}
          Length = 270

 Score =  181 bits (461), Expect = 1e-46
 Identities = 96/255 (37%), Positives = 131/255 (51%), Gaps = 18/255 (7%)

Query: 78  LKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMARRLKDNPLLVG------ 131
            K G Y      ++ ++ + +  GK     +   EG  +    ++L++ P +        
Sbjct: 12  FKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDK 71

Query: 132 --------ELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDVDHP 183
                   EL     +EG   P T+ +   T    +L +A  K  + VD  WE R    P
Sbjct: 72  YATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLP 131

Query: 184 IKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYDLTN 243
            K K  LV +ASI+EKET+ A ER  VASVFINR    +RLQ+D TVIYG+     +  N
Sbjct: 132 YKDKNQLVTMASIIEKETAVASERDQVASVFINRLRIGMRLQTDPTVIYGM----GERYN 187

Query: 244 RKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGHFFS 303
            K+SR+D    T YN+Y + GLPP AI+ PG  SL+A A P  T  LYFV DGKGGH F+
Sbjct: 188 GKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFN 247

Query: 304 TNFKDHTINVQKWRK 318
           TN   H  +VQ + K
Sbjct: 248 TNLASHNKSVQDYLK 262


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 43/246 (17%), Positives = 76/246 (30%), Gaps = 81/246 (32%)

Query: 134 PLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQK------QVVDEVWEIRDVDHPIKSK 187
           PL L   G+L    +   + T    I +Q  L+++      +  +        D    + 
Sbjct: 8   PLTLS-HGSL---EHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAA----DDEPTTP 57

Query: 188 EDLVI-----LASIVEKETSRADERAHVASVFINRFSKSIRLQSD-STVIYGILEGDYDL 241
            +LV      ++S+VE       +   V ++ +  F       +D   +    L  + D 
Sbjct: 58  AELVGKFLGYVSSLVEPSK--VGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQENDT 114

Query: 242 TNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAV----AKPL-------HTED- 289
           T  K       IK    + +M   P    SN   L   AV    A+ +       +T+D 
Sbjct: 115 TLVKTKEL---IKNYITARIMAKRPFDKKSNSA-L-FRAVGEGNAQLVAIFGGQGNTDDY 169

Query: 290 ------LY-----FVGDGKGGHFFST-------------NFKD---HTINVQKWRKMSL- 321
                 LY      VGD                      + +      +N+ +W    L 
Sbjct: 170 FEELRDLYQTYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFTQGLNILEW----LE 220

Query: 322 --ESKP 325
              + P
Sbjct: 221 NPSNTP 226


>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
           barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
           vulnificus CMCP6} PDB: 2plk_A*
          Length = 419

 Score = 27.2 bits (59), Expect = 4.5
 Identities = 6/28 (21%), Positives = 17/28 (60%)

Query: 172 DEVWEIRDVDHPIKSKEDLVILASIVEK 199
             +++I  +  P+ S E++ ++ + VE+
Sbjct: 25  QSIFDIHSLTSPVLSAEEIHLIEASVEQ 52


>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A
           {Escherichia coli} SCOP: b.122.1.10
          Length = 125

 Score = 26.7 bits (58), Expect = 7.7
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 132 ELPLELPLEGT-LCPSTYNFPL--GTHRS-EILNQAMLKQKQVVDEVWEIRDVDHPIKSK 187
           E+P+ LPL    + P     PL  G  +S   L  AM   K+++    +    D P  + 
Sbjct: 17  EIPV-LPLRDVVVYPHMV-IPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVND 74

Query: 188 EDLVILASIVEKETSRADERAHVASVFINRF 218
              V   + + +     D    V    + R 
Sbjct: 75  LFTVGTVASILQMLKLPDGTVKVLVEGLQRA 105


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,758,025
Number of extensions: 127508
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 8
Length of query: 325
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 232
Effective length of database: 3,438,538
Effective search space: 797740816
Effective search space used: 797740816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)