BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase
[Candidatus Liberibacter asiaticus str. psy62]
(325 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 325
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MLKFLIPLITIFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIV 60
MLKFLIPLITIFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIV
Sbjct: 1 MLKFLIPLITIFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIV 60
Query: 61 NPYIFRYVTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMA 120
NPYIFRYVTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMA
Sbjct: 61 NPYIFRYVTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMA 120
Query: 121 RRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDV 180
RRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDV
Sbjct: 121 RRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDV 180
Query: 181 DHPIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYD 240
DHPIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYD
Sbjct: 181 DHPIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYD 240
Query: 241 LTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGH 300
LTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGH
Sbjct: 241 LTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGH 300
Query: 301 FFSTNFKDHTINVQKWRKMSLESKP 325
FFSTNFKDHTINVQKWRKMSLESKP
Sbjct: 301 FFSTNFKDHTINVQKWRKMSLESKP 325
>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Length = 701
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 115 TVKQMARRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEV 174
+V+ ++ RL NPL++ +LP+ S NF E+ +A+L + + +
Sbjct: 152 SVEMISSRLGANPLVI-----QLPV-----GSESNFQGVIDLVEM--KALLWKNEDLGSS 199
Query: 175 WEIRDVDHPIKSKEDLV---ILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVI 231
W++ ++ +K + ++ SIVE + S D S +R IRL + S
Sbjct: 200 WDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKF 259
Query: 232 YGILEG 237
+ +L G
Sbjct: 260 FPVLCG 265
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 94 IAEKIMYGKVLMHSISFPE-GFTVKQMARRLKDNPLLVGE 132
+ EK+ GKV + E T++ + RR K+NPL VG+
Sbjct: 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGD 233
>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 673
Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 258 NSYLMNGLPPTAISNPGRLSLE-----------AVAKPL---HTEDLYFVGDGKGGHFFS 303
+ LM G+ AIS G L L ++ P+ + D Y G + S
Sbjct: 168 DGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLS 227
Query: 304 TNFKDHTINVQKWRKMSLESKP 325
N DH RK L KP
Sbjct: 228 VNGHDHHAITSTLRKAQLSDKP 249
>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 201
Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 144 CPSTY---NFPLGTHRSEILNQAMLKQKQVVDEVWEIRDVDHPIKSKEDLVILASIVEKE 200
C S + +P +++ L+ + +D V E+R D + + + +L +I ++
Sbjct: 77 CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEK 136
Query: 201 TSRADERAHVASVFINRFSKSI 222
+ R+D++ V I + K+I
Sbjct: 137 SVRSDDKYDVFLKRIENYRKTI 158
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 115 TVKQMARRLKDNPLLVGE 132
++ ++RR K+NP+L+G+
Sbjct: 190 AIQVLSRRTKNNPVLIGD 207
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,116
Number of Sequences: 1233
Number of extensions: 9015
Number of successful extensions: 18
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 9
length of query: 325
length of database: 328,796
effective HSP length: 74
effective length of query: 251
effective length of database: 237,554
effective search space: 59626054
effective search space used: 59626054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)