BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62] (325 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 325 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MLKFLIPLITIFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIV 60 MLKFLIPLITIFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIV Sbjct: 1 MLKFLIPLITIFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIV 60 Query: 61 NPYIFRYVTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMA 120 NPYIFRYVTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMA Sbjct: 61 NPYIFRYVTQFYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMA 120 Query: 121 RRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDV 180 RRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDV Sbjct: 121 RRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDV 180 Query: 181 DHPIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYD 240 DHPIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYD Sbjct: 181 DHPIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYD 240 Query: 241 LTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGH 300 LTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGH Sbjct: 241 LTNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGH 300 Query: 301 FFSTNFKDHTINVQKWRKMSLESKP 325 FFSTNFKDHTINVQKWRKMSLESKP Sbjct: 301 FFSTNFKDHTINVQKWRKMSLESKP 325 >gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] Length = 701 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 115 TVKQMARRLKDNPLLVGELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEV 174 +V+ ++ RL NPL++ +LP+ S NF E+ +A+L + + + Sbjct: 152 SVEMISSRLGANPLVI-----QLPV-----GSESNFQGVIDLVEM--KALLWKNEDLGSS 199 Query: 175 WEIRDVDHPIKSKEDLV---ILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVI 231 W++ ++ +K + ++ SIVE + S D S +R IRL + S Sbjct: 200 WDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKF 259 Query: 232 YGILEG 237 + +L G Sbjct: 260 FPVLCG 265 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 94 IAEKIMYGKVLMHSISFPE-GFTVKQMARRLKDNPLLVGE 132 + EK+ GKV + E T++ + RR K+NPL VG+ Sbjct: 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGD 233 >gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%) Query: 258 NSYLMNGLPPTAISNPGRLSLE-----------AVAKPL---HTEDLYFVGDGKGGHFFS 303 + LM G+ AIS G L L ++ P+ + D Y G + S Sbjct: 168 DGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLS 227 Query: 304 TNFKDHTINVQKWRKMSLESKP 325 N DH RK L KP Sbjct: 228 VNGHDHHAITSTLRKAQLSDKP 249 >gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 144 CPSTY---NFPLGTHRSEILNQAMLKQKQVVDEVWEIRDVDHPIKSKEDLVILASIVEKE 200 C S + +P +++ L+ + +D V E+R D + + + +L +I ++ Sbjct: 77 CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEK 136 Query: 201 TSRADERAHVASVFINRFSKSI 222 + R+D++ V I + K+I Sbjct: 137 SVRSDDKYDVFLKRIENYRKTI 158 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust. Identities = 7/18 (38%), Positives = 15/18 (83%) Query: 115 TVKQMARRLKDNPLLVGE 132 ++ ++RR K+NP+L+G+ Sbjct: 190 AIQVLSRRTKNNPVLIGD 207 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,116 Number of Sequences: 1233 Number of extensions: 9015 Number of successful extensions: 18 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 9 length of query: 325 length of database: 328,796 effective HSP length: 74 effective length of query: 251 effective length of database: 237,554 effective search space: 59626054 effective search space used: 59626054 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)