HHsearch alignment for GI: 254780533 and conserved domain: COG3425
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].
Probab=98.62 E-value=1.4e-07 Score=67.37 Aligned_cols=262 Identities=19% Similarity=0.174 Sum_probs=146.6
Q ss_pred CEEEEEEEEECCCCC-CHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCHHHHHHHCHHH
Q ss_conf 389994547718898-9999999998298655307887550048666141515654553457957678989998528999
Q gi|254780533|r 3 RVVVTGLGMITPLGC-GVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDGTFNYEDWILSSDLRKIDQFI 81 (423)
Q Consensus 3 rVaItG~g~v~p~G~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~ag~i~~~~~~~~~f~~~~~i~~~~~~~~d~~~ 81 (423)
T Consensus 2 ~iGI~~~g~y~p~~~i~~~ela~~~--g----------~d~~k~~~gl~--~-----------~e~sv~~~----~ED~v 52 (377)
T COG3425 2 MIGIVGIGAYIPRYRIKLEELARAW--G----------VDPEKIKKGLG--V-----------EEKSVPPW----DEDAV 52 (377)
T ss_pred CCCCCEEEEECCCEEEEHHHHHHHC--C----------CCHHHHHHCCC--C-----------CCCCCCCC----CHHHH
T ss_conf 5551238885662386099997632--8----------88377653004--2-----------34467997----42089
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCC
Q ss_conf 999999763221002681002686531-1024455686000000123455432100121000013210102233333211
Q gi|254780533|r 82 LYGMVASDMALADSGWAPKTDKDRNST-GVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQL 160 (423)
Q Consensus 82 ~l~l~aa~~Al~dAGl~~~~~~~~~r~-gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~l 160 (423)
T Consensus 53 TmaveAA~~~l~r~~~D~~~------Ig~v~vgTES~~d~----------------~K----------~~at~v~~~lg~ 100 (377)
T COG3425 53 TMAVEAARNALKRADIDPSK------IGAVIVGSESGPDA----------------VK----------PTATIVAEALGL 100 (377)
T ss_pred HHHHHHHHHHHHCCCCCHHH------CCEEEEECCCCCCC----------------CC----------CHHHHHHHHHCC
T ss_conf 99999999987513889889------66699953777654----------------44----------058999998389
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 0001133--34444322344332331335602100121011223222234332101245666668422002220346765
Q gi|254780533|r 161 RGPNHAV--TTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGF 238 (423)
Q Consensus 161 ~Gp~~ti--~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rpFd~~~dG~ 238 (423)
T Consensus 101 ~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~-----------~~~~~--------~~--------E~ 153 (377)
T COG3425 101 NPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQ-----------YAPGD--------AL--------EY 153 (377)
T ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHC-----------CCCCC--------CC--------CC
T ss_conf 97512056787899889999999999972875541799631103-----------58886--------56--------76
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC----CCC--CC--------CHHHHHHCCCCCCCCCC
Q ss_conf 332440454102345444332233332110012-1111221000----121--10--------01332101333232223
Q gi|254780533|r 239 VMGEGAGALVLEDLEHAKARGAKIYSEIIGYGL-SGDAFHITMP----PED--GN--------GAYRCMSSAIARAKLLP 303 (423)
Q Consensus 239 ~~gEGa~~lvLe~~~~A~~rg~~i~a~i~G~~~-~~d~~~~~~~----~~~--~~--------~~~~~i~~aL~~a~i~~ 303 (423)
T Consensus 154 t~GAGavA~lIg~n~-------~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~ 226 (377)
T COG3425 154 TAGAGAVAFLIGKNP-------PIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSP 226 (377)
T ss_pred CCCCCEEEEEEECCC-------CEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 677860899980698-------7278724756774577761466898466407635589999999999999999838984
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 33310210367654432013567764200243411137012-2122368999999999999
Q gi|254780533|r 304 SDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKS-AMGHLLGAAGAVEAAICNL 363 (423)
Q Consensus 304 ~di~~i~~hgtgt~~D~~E~~al~~~f~~~~~~~~v~s~K~-~~Gh~~~asG~~~l~~~~l 363 (423)
T Consensus 227 ~dfdy~vfH~P~~---k~~~ka~k~l~~-~~e~v~~~l~~~~~vGN~YtgS~~L~Las~Ld 283 (377)
T COG3425 227 DDFDYIVFHQPNG---KFPKKAAKSLGF-KEEQVKPGLVYPQRIGNTYTGSLLLGLASLLD 283 (377)
T ss_pred HHHCEEEECCCCC---CHHHHHHHHHCC-CHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 5507598317987---248999998573-47662843011665275111069999999985