HHsearch alignment for GI: 254780533 and conserved domain: PRK08963
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed.
Probab=99.58 E-value=2.5e-15 Score=116.96 Aligned_cols=272 Identities=24% Similarity=0.337 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCC--C
Q ss_conf 99999997632210026810026865311024455686000000123455432100121000013210102233333--2
Q gi|254780533|r 81 ILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIR--N 158 (423)
Q Consensus 81 ~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~--~ 158 (423)
T Consensus 38 ~~L~a~~ik~~l~r~~i~p~~-Id----~Vi~G~v~~~~~g----~----------------------n~AR~aaL~aGl 86 (436)
T PRK08963 38 VDLGKMVVGELLARSEIDPKL-IE----QLVFGQVVQMPEA----P----------------------NIAREIVLGTGM 86 (436)
T ss_pred HHHHHHHHHHHHHHCCCCHHH-CC----EEEEEECCCCCCC----C----------------------HHHHHHHHHCCC
T ss_conf 999999999999982989899-99----8999836756767----7----------------------299999997599
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHH-HHHHH---------------------HHH-----
Q ss_conf 110001133344443223443323313356021001210112232-22234---------------------332-----
Q gi|254780533|r 159 QLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPIC-RLGVA---------------------SFA----- 211 (423)
Q Consensus 159 ~l~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~-~~~~~---------------------~f~----- 211 (423)
T Consensus 87 p~~vp~~TVnr~C~SGl~Ai~~Aa~~I~~G~~dvvlaGGvEsMS~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (436)
T PRK08963 87 NVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRLR 166 (436)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCC
T ss_conf 98886267763223568999999999974999789994512246686555631123310023244400110011345533
Q ss_pred ----------------HCC---------------------------------------------------CCCCCC----
Q ss_conf ----------------101---------------------------------------------------245666----
Q gi|254780533|r 212 ----------------ACR---------------------------------------------------ALSTRF---- 220 (423)
Q Consensus 212 ----------------~~~---------------------------------------------------~ls~~~---- 220 (423)
T Consensus 167 d~~~~~~~~~d~~~~~~MG~tAE~~A~~~gIsReeqD~~A~~Sh~rA~~A~~~G~f~~EIvpv~v~~~~~~~~~De~iR~ 246 (436)
T PRK08963 167 DLLPVPPAVAEYSTGLRMGDTAEQMAKTYGISREQQDALAHRSHQLAAQAWAEGKLADEVMTAFVPPYKQPLAEDNNIRG 246 (436)
T ss_pred CCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 35667700025545786899999999995999999999999999999998865975104642253688876651576488
Q ss_pred CCCHHH--HHHH-HHCCCCCCC-------CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHH
Q ss_conf 668422--0022-203467653-------3244045410234544433223333211001211-1122100012110013
Q gi|254780533|r 221 NDDPTR--ASRP-FDQDRDGFV-------MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSG-DAFHITMPPEDGNGAY 289 (423)
Q Consensus 221 ~~~p~~--~~rp-Fd~~~dG~~-------~gEGa~~lvLe~~~~A~~rg~~i~a~i~G~~~~~-d~~~~~~~~~~~~~~~ 289 (423)
T Consensus 247 ~tt~E~La~LkP~F~~~-~GtvTAgNss~~~DGAaavll~s~~~a~~~gl~pla~i~~~a~~gvdP~~-----~m~~gPv 320 (436)
T PRK08963 247 DSTLEDYAKLRPAFDRK-HGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLRSYAFTAIDVWQ-----DMLMGPA 320 (436)
T ss_pred CCCHHHHHCCCCEEECC-CCCEECCCCCCCCCCHHHHHHCCHHHHHHCCCCCEEEEEEEEEEEECCCH-----HCCCCHH
T ss_conf 87633440468612168-88777664685565358776426989986799826999998998428332-----0265779
Q ss_pred HHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHH------HHHHHCCC--CCCC---C----CCCHHHHHHHHHHHH
Q ss_conf 3210133323222333310210367654432013567------76420024--3411---1----370122122368999
Q gi|254780533|r 290 RCMSSAIARAKLLPSDIDYINAHGTSTIADTIELGAV------ERLMGDSC--YHVS---M----SSTKSAMGHLLGAAG 354 (423)
Q Consensus 290 ~~i~~aL~~a~i~~~di~~i~~hgtgt~~D~~E~~al------~~~f~~~~--~~~~---v----~s~K~~~Gh~~~asG 354 (423)
T Consensus 321 ~Ai~k~L~ragl~~~Did~~EinEAFAaq~la~~~~l~~~~f~~~~lg~~~~~g~id~~kvN~~GGaI--AlGHP~GaTG 398 (436)
T PRK08963 321 YATPLALERAGLTLADLTLIDMHEAFAAQTLANLQMFASDRFAREKLGRSQAIGEVDMSKFNVLGGSI--AYGHPFAATG 398 (436)
T ss_pred HHHHHHHHHCCCCHHHCCEEEEHHHCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHCCCCCCHH--HHCCCCCCCH
T ss_conf 99999999849998999877751235788999999852025667751443333559787758885388--7578812258
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEE
Q ss_conf 9999999999870832775888788744886507886724788789994456777358999982
Q gi|254780533|r 355 AVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFRK 418 (423)
Q Consensus 355 ~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~~~~~~~~~~~al~~s~G~gG~n~~~il~~ 418 (423)
T Consensus 399 arl~~tl~~~L~~~---------------------------~~~~Gl~s~C~gGG~g~A~liEv 435 (436)
T PRK08963 399 ARMITQTLHELRRR---------------------------GGGLGLTTACAAGGLGAAMVLEV 435 (436)
T ss_pred HHHHHHHHHHHHHH---------------------------CCCEEEEEECCCCCEEEEEEEEE
T ss_conf 99999999999980---------------------------99989999633233138999995