HHsearch alignment for GI: 254780533 and conserved domain: PRK12404
>PRK12404 stage V sporulation protein AD; Provisional.
Probab=96.25 E-value=0.0022 Score=40.50 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCC
Q ss_conf 99999997632210026810026865311024455686000000123455432100121000013210102233333211
Q gi|254780533|r 81 ILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQL 160 (423)
Q Consensus 81 ~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~l 160 (423)
T Consensus 55 ~~m~~~A~~~al~Ka~l~~~d------Id~~~aG---D---------Ll-nQ------------~---i~ssf~ar~l~- 99 (334)
T PRK12404 55 KKLFEEACSRATEKAKLRKDD------IQFVLAG---D---------LI-NQ------------I---TPTSFAARTLG- 99 (334)
T ss_pred HHHHHHHHHHHHHHCCCCHHH------CEEEEEC---H---------HH-HH------------H---HHHHHHHHHCC-
T ss_conf 999999999999874999788------6489612---2---------44-32------------5---78778898649-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 00011333444432234433233133560210012101122322223433210124566666842200222034676533
Q gi|254780533|r 161 RGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVM 240 (423)
Q Consensus 161 ~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rpFd~~~dG~~~ 240 (423)
T Consensus 100 -iPf~GlyGACST~~E~L~laa~~vd~g~A~~vla~tSSH~~tA--ErQFR----~P~E-----yG~QrpptAq--WTV- 164 (334)
T PRK12404 100 -TPYLGLFGACSTSMEGLALGASIVNAKGAKYLLTGASSHNTAV--EKQFR----YPTE-----YGGQKPPTAQ--WTV- 164 (334)
T ss_pred -CCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHH--HHHCC----CCHH-----CCCCCCCCCC--EEE-
T ss_conf -9801113566778999999999984665435023204452036--65425----8221-----1677998662--788-
Q ss_pred CCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 2440454102345444-33223333211001211112210-00121100133210133323222333310210
Q gi|254780533|r 241 GEGAGALVLEDLEHAK-ARGAKIYSEIIGYGLSGDAFHIT-MPPEDGNGAYRCMSSAIARAKLLPSDIDYINA 311 (423)
Q Consensus 241 gEGa~~lvLe~~~~A~-~rg~~i~a~i~G~~~~~d~~~~~-~~~~~~~~~~~~i~~aL~~a~i~~~di~~i~~ 311 (423)
T Consensus 165 -TGaGa~il~~~~~~p~It~~T-iGkVvD~Gi~-D~~nMGaAMAP---AA~dTI~~hf~D~g~~p~dYDlI~T 231 (334)
T PRK12404 165 -TGAGAAILSKTGHGPRVTSAT-IGRVVDMGLT-DPFNMGGAMAP---AAVDTIEAHLRDRQIDASYYDLIVT 231 (334)
T ss_pred -ECEEEEEEECCCCCCEEEEEE-EEEEEECCCC-CCCCCHHHHHH---HHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf -761899994389997798987-7888765888-84302555547---8999999999970999234457996