HHsearch alignment for GI: 254780533 and conserved domain: TIGR02845
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=97.99 E-value=3.8e-06 Score=58.24 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=118.6
Q ss_pred CHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCC
Q ss_conf 8999-999999763221002681002686531102445568600000012345543210012100001321010223333
Q gi|254780533|r 78 DQFI-LYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISI 156 (423)
Q Consensus 78 d~~~-~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~ 156 (423)
T Consensus 47 EkAEr~lm~~Av~~aL~Ka~l~~----~PP~vD~~LAG------------DLL-N---------------Q~~~anFvAR 94 (331)
T TIGR02845 47 EKAERKLMEDAVNLALKKANLKK----DPPDVDFFLAG------------DLL-N---------------QIITANFVAR 94 (331)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC----CCCCEEEEEHH------------HHH-H---------------HHHHHHHHHH
T ss_conf 99999999999999875358712----78721112010------------366-6---------------7899989887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 32110001133344443223443323313356021001210112232222343321012456666684220022203467
Q gi|254780533|r 157 RNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRD 236 (423)
Q Consensus 157 ~~~l~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rpFd~~~d 236 (423)
T Consensus 95 ~L~i--PflGLygACsTs~E~L~~gA~lv~GGfAd~vLaAtSSH------y~taERQFRYPTEy-----G~Qkp~tAq-- 159 (331)
T TIGR02845 95 ELGI--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSH------YATAERQFRYPTEY-----GVQKPPTAQ-- 159 (331)
T ss_pred HCCC--CCEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCH------HHHHHHHCCCCCCC-----CCCCCCCCC--
T ss_conf 4588--82340213578999999999998320022111121111------35322102565125-----611599886--
Q ss_pred CCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCC
Q ss_conf 653324404541023454443-322333321100121111221-000121100133210133323222333310210367
Q gi|254780533|r 237 GFVMGEGAGALVLEDLEHAKA-RGAKIYSEIIGYGLSGDAFHI-TMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGT 314 (423)
Q Consensus 237 G~~~gEGa~~lvLe~~~~A~~-rg~~i~a~i~G~~~~~d~~~~-~~~~~~~~~~~~~i~~aL~~a~i~~~di~~i~~hgt 314 (423)
T Consensus 160 ~TVT--GAGA~~l~~~~~~~~it~aT-~GkV~D~G~~d-P~~mG~AMAP---AAaDTI~~Hf~dtg~~~~DYDLIvTGDL 232 (331)
T TIGR02845 160 WTVT--GAGAVLLASTGGGPRITSAT-IGKVVDLGLTD-PLDMGAAMAP---AAADTIEAHFKDTGRSVDDYDLIVTGDL 232 (331)
T ss_pred CCEE--HHHEEEECCCCCCCEEEEEE-EEEEEECCCCC-CCCHHHHHHH---HHHHHHHHHHHHCCCCCCEEEEEEECCH
T ss_conf 1250--34648654478943641453-01477123368-6411354126---8999999999870788040136787330
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 6544320135677642
Q gi|254780533|r 315 STIADTIELGAVERLM 330 (423)
Q Consensus 315 gt~~D~~E~~al~~~f 330 (423)
T Consensus 233 ~rvG~~I~~~LL~e~y 248 (331)
T TIGR02845 233 ARVGSEILRKLLKEEY 248 (331)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 0214899999988860