HHsearch alignment for GI: 254780533 and conserved domain: cd00829
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.70 E-value=2.3e-17 Score=129.93 Aligned_cols=253 Identities=28% Similarity=0.281 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCC
Q ss_conf 99999999763221002681002686531102445568600000012345543210012100001321010223333321
Q gi|254780533|r 80 FILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQ 159 (423)
Q Consensus 80 ~~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~ 159 (423)
T Consensus 16 ~~eL~~~a~~~Al~dagi~~~~-ID----~v~~g~~~~~~~--------------------------~~~~~~~~a~~~G 64 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPAD-ID----AVVVGNAAGGRF--------------------------QSFPGALIAEYLG 64 (375)
T ss_pred HHHHHHHHHHHHHHHHCCCHHH-HC----EEEEEECCCCCC--------------------------CCHHHHHHHHHCC
T ss_conf 9999999999999983919899-49----999991287553--------------------------4769999999829
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHH--------------------------HHHH-
Q ss_conf 10-0011333444432234433233133560210012101122322223--------------------------4332-
Q gi|254780533|r 160 LR-GPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGV--------------------------ASFA- 211 (423)
Q Consensus 160 l~-Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~--------------------------~~f~- 211 (423)
T Consensus 65 ~~~~~~~~v~~~c~Sg~~ai~~Aa~~I~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a 144 (375)
T cd00829 65 LLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAA 144 (375)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99986588689886999999999999977999989999875167787655544456772033320244665789999999
Q ss_pred -----HCCCCCC-----------C-CCCCHH----------HH--HHHH-H--CCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf -----1012456-----------6-666842----------20--0222-0--346765332440454102345444332
Q gi|254780533|r 212 -----ACRALST-----------R-FNDDPT----------RA--SRPF-D--QDRDGFVMGEGAGALVLEDLEHAKARG 259 (423)
Q Consensus 212 -----~~~~ls~-----------~-~~~~p~----------~~--~rpF-d--~~~dG~~~gEGa~~lvLe~~~~A~~rg 259 (423)
T Consensus 145 ~~~~~~~g-~~re~~~~~a~~~~~~A~~np~A~~~~~~t~e~~~~~~~i~~Pl~~~~~~~~~DGAaa~vl~s~~~A~~~~ 223 (375)
T cd00829 145 RRYMHRYG-TTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERARELT 223 (375)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHHHHCC
T ss_conf 99999979-79999999999999864428612025885899982347644662143157666640589996399998769
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHH-HHC----
Q ss_conf 233332110012111122100012--1100133210133323222333310210367654432013567764-200----
Q gi|254780533|r 260 AKIYSEIIGYGLSGDAFHITMPPE--DGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTIADTIELGAVERL-MGD---- 332 (423)
Q Consensus 260 ~~i~a~i~G~~~~~d~~~~~~~~~--~~~~~~~~i~~aL~~a~i~~~di~~i~~hgtgt~~D~~E~~al~~~-f~~---- 332 (423)
T Consensus 224 ~~p-~~i~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa~---~~l~~~e~lGl~~~g~~ 299 (375)
T cd00829 224 DRP-VWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTI---AELLALEDLGFCEKGEG 299 (375)
T ss_pred CCC-EEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHH---HHHHHHHHCCCCCCCCH
T ss_conf 993-79999999952654356785222325999999999981999787656420157669---99999998099977715
Q ss_pred ----------CCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ----------24341113701--2212236899999999999998708
Q gi|254780533|r 333 ----------SCYHVSMSSTK--SAMGHLLGAAGAVEAAICNLAIRDG 368 (423)
Q Consensus 333 ----------~~~~~~v~s~K--~~~Gh~~~asG~~~l~~~~l~l~~~ 368 (423)
T Consensus 300 ~~~~~~g~~~~~G~~pvN~~GG~ia~Ghp~gasG~~~~~~~~~ql~~~ 347 (375)
T cd00829 300 GKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGE 347 (375)
T ss_pred HHHHHCCCCCCCCCCEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 667753785569982170885587649841078999999999998564