HHsearch alignment for GI: 254780533 and conserved domain: cd00831

>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=99.14  E-value=8.4e-11  Score=87.99  Aligned_cols=258  Identities=20%  Similarity=0.224  Sum_probs=139.0

Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCC
Q ss_conf             99985289999999997632210026810026865311024455686000000123455432100121000013210102
Q gi|254780533|r   72 SDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLS  151 (423)
Q Consensus        72 ~~~~~~d~~~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  151 (423)
T Consensus        77 r~~~~~~~~~~la~~Aa~~AL~~ag~~~~d-Id----~lI~~Tst~-~---------------------~~P-----s~a  124 (361)
T cd00831          77 RNDIALEEARELAEEAARGALDEAGLRPSD-ID----HLVVNTSTG-N---------------------PTP-----SLD  124 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-CC----EEEEECCCC-C---------------------CCC-----CHH
T ss_conf             877799899999999999999981989899-99----999986599-9---------------------989-----769


Q ss_pred             CCCCCCCCCCCCC--CCCC-CCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             2333332110001--1333-444432234433233133560210012101122322223433210124566666842200
Q gi|254780533|r  152 GNISIRNQLRGPN--HAVT-TACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRAS  228 (423)
Q Consensus       152 ~~is~~~~l~Gp~--~ti~-~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~  228 (423)
T Consensus       125 ~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~~i~~g~~~~vLVV~~E~~-S~~----~~~--------~d~~~~~-  190 (361)
T cd00831         125 AMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELC-SLW----YRG--------PDHRSML-  190 (361)
T ss_pred             HHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CEE----CCC--------CCCHHHH-
T ss_conf             99999738998700355646755689999999999998299976999961211-202----068--------8757775-


Q ss_pred             HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCCCCCC-----CCCHH
Q ss_conf             2220346765332440454102345444332233332110012--------------1111221000121-----10013
Q gi|254780533|r  229 RPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGL--------------SGDAFHITMPPED-----GNGAY  289 (423)
Q Consensus       229 rpFd~~~dG~~~gEGa~~lvLe~~~~A~~rg~~i~a~i~G~~~--------------~~d~~~~~~~~~~-----~~~~~  289 (423)
T Consensus       191 ---v---~~~LFGDGA~A~vl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l-~~~v~~~~~~~~~  262 (361)
T cd00831         191 ---V---GNALFGDGAAAVLLSNDPRDRRRERPLF-ELVRAASTLLPDSEDAMGWHLGEEGLTFVL-SRDVPRLVEKNLE  262 (361)
T ss_pred             ---H---HHCCCCCCCEEEEEECCCCCCCCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCHHHHHHHHHHH
T ss_conf             ---5---4200047725899842676665666526-883777612468887666650577537850-6369999999999


Q ss_pred             HHHHCCCCCC--CCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3210133323--22233331021036765443201356776420024341113-70122122368999999999999987
Q gi|254780533|r  290 RCMSSAIARA--KLLPSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMS-STKSAMGHLLGAAGAVEAAICNLAIR  366 (423)
Q Consensus       290 ~~i~~aL~~a--~i~~~di~~i~~hgtgt~~D~~E~~al~~~f~~~~~~~~v~-s~K~~~Gh~~~asG~~~l~~~~l~l~  366 (423)
T Consensus       263 ~~~~~~l~~~~~~~~~~di~~~~~Hq~~----~~Ii~~v~~~Lgl~~~~~~~s~~~l~~~GNtsSaSip~~L---~~~~~  335 (361)
T cd00831         263 RVLRKLLARLGIGLFKLAFDHWCVHPGG----RAVLDAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVL---AYMEA  335 (361)
T ss_pred             HHHHHHHHHHCCCCCHHHCCEEEECCCC----HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH---HHHHH
T ss_conf             9999999982589996772558878786----8999999998298968832578789863853988999999---99997


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf             083277588878874488650788672478878999445677735899
Q gi|254780533|r  367 DGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSL  414 (423)
Q Consensus       367 ~~~ipp~~~~~~~~~~~~~~~v~~~~~~~~~~~al~~s~G~gG~n~~~  414 (423)
T Consensus       336 ~~~~------------------------~~Gd~vl~~afG~Glt~~~~  359 (361)
T cd00831         336 KGRV------------------------KRGDRGLLIAFGPGFTCESA  359 (361)
T ss_pred             CCCC------------------------CCCCEEEEEEECCHHEEEEE
T ss_conf             3999------------------------99998999998104055312