HHsearch alignment for GI: 254780533 and conserved domain: pfam08392
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=92.87 E-value=0.021 Score=34.25 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=97.5
Q ss_pred CEEEEEEEEECCCCC---CHHHHHHHHHCCCCCCEECCCCCCCCCC--------CCCCCEECCCCCCCCCCCCHHHCCCH
Q ss_conf 389994547718898---9999999998298655307887550048--------66614151565455345795767898
Q gi|254780533|r 3 RVVVTGLGMITPLGC---GVDVSWSRLIAGEVGIRHLDQKFDLEGL--------SSKIAGLIPVGNGSDGTFNYEDWILS 71 (423)
Q Consensus 3 rVaItG~g~v~p~G~---~~~~~w~~L~~G~s~i~~~~~~~~~~~~--------~~~~ag~i~~~~~~~~~f~~~~~i~~ 71 (423)
T Consensus 8 ~vYLvDfaC~kp~~~~kv~~~~~~e~~~~~~--------~f~~~s~~F~~kil~rSGlG~e---Ty~P~~~~~----~p~ 72 (290)
T pfam08392 8 PVYLVDYACYKPPDDRKVSTETFMEHIRRNG--------KFDEESLDFQRKILERSGLGEE---TYVPRSVLE----IPP 72 (290)
T ss_pred CEEEEEEEEECCCCCCCCCHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHCCCCCC---CCCCHHHCC----CCC
T ss_conf 8899855320797203169999999998658--------9986899999999996489998---857825425----899
Q ss_pred --HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHH
Q ss_conf --999852899999999976322100268100268653110244556860000001234554321001210000132101
Q gi|254780533|r 72 --SDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISL 149 (423)
Q Consensus 72 --~~~~~~d~~~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (423)
T Consensus 73 ~~s~~~ar~Eae~v~f~avd~Lf~ktgv~P~d------IdiLVvNcSl-------------------f~P------tP-S 120 (290)
T pfam08392 73 NPTMAEAREEAEEVMFGAVDELFAKTGVRPRD------IGILVVNCSL-------------------FNP------TP-S 120 (290)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH------CCEEEEECCC-------------------CCC------CC-C
T ss_conf 98799999999999999999999973998768------9999996778-------------------888------85-2
Q ss_pred CCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 02233333211000--113334-444322344332331335602100121011223222234332101245666668422
Q gi|254780533|r 150 LSGNISIRNQLRGP--NHAVTT-ACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226 (423)
Q Consensus 150 ~a~~is~~~~l~Gp--~~ti~~-aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~ 226 (423)
T Consensus 121 LsamivNrykmR~di~s~nLsGMGCSAglIsIdLAk~lL~~~~ns~ALVvSTE~-it~n~Y~G~~rsmLl~N-------- 191 (290)
T pfam08392 121 LSAMIVNRYKMRGDIKSYNLSGMGCSAGLISIDLAKDLLQVHPNTYALVVSTEN-ITPNWYAGNDRSMLLPN-------- 191 (290)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEE-CCCCCCCCCCHHHHCCC--------
T ss_conf 899998860686430063366765113475799999999848996599998530-45445358736650140--------
Q ss_pred HHHHHHCCCCCCCCCCCCEEEECCCC
Q ss_conf 00222034676533244045410234
Q gi|254780533|r 227 ASRPFDQDRDGFVMGEGAGALVLEDL 252 (423)
Q Consensus 227 ~~rpFd~~~dG~~~gEGa~~lvLe~~ 252 (423)
T Consensus 192 -c----------LFR~GgAAiLLSN~ 206 (290)
T pfam08392 192 -C----------LFRMGGAAILLSNK 206 (290)
T ss_pred -C----------CCCCCCEEEEEECC
T ss_conf -1----------13577147983058